Citrus Sinensis ID: 011841
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 476 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LIS3 | 460 | UDP-glucuronate 4-epimera | yes | no | 0.939 | 0.971 | 0.794 | 0.0 | |
| Q9LPC1 | 434 | UDP-glucuronate 4-epimera | no | no | 0.840 | 0.921 | 0.677 | 1e-168 | |
| O81312 | 430 | UDP-glucuronate 4-epimera | no | no | 0.844 | 0.934 | 0.670 | 1e-167 | |
| O22141 | 437 | UDP-glucuronate 4-epimera | no | no | 0.739 | 0.805 | 0.771 | 1e-166 | |
| Q9STI6 | 436 | UDP-glucuronate 4-epimera | no | no | 0.752 | 0.821 | 0.761 | 1e-158 | |
| Q9M0B6 | 429 | UDP-glucuronate 4-epimera | no | no | 0.876 | 0.972 | 0.629 | 1e-154 | |
| P39858 | 334 | Protein CapI OS=Staphyloc | yes | no | 0.684 | 0.976 | 0.470 | 6e-78 | |
| Q04871 | 334 | Uncharacterized 37.6 kDa | N/A | no | 0.691 | 0.985 | 0.457 | 8e-76 | |
| Q58455 | 326 | Uncharacterized protein M | yes | no | 0.653 | 0.953 | 0.421 | 2e-69 | |
| O54067 | 341 | UDP-glucuronate 5'-epimer | yes | no | 0.686 | 0.958 | 0.395 | 7e-65 |
| >sp|Q9LIS3|GAE6_ARATH UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/462 (79%), Positives = 411/462 (88%), Gaps = 15/462 (3%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
+++ DTSKT+KLERYNSYLR++H TK+L++SSK+ FRAT+L+ALVL+L F +N+PPLSD
Sbjct: 3 LSATADTSKTVKLERYNSYLRKIHSTKVLNASSKVLFRATLLVALVLVLIFAINYPPLSD 62
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFS---TGGAEWEKQVRHSATPRRPN 117
+ + + H+ S LS+ FSSS S GGA WEK+VR S+T +RP+
Sbjct: 63 SRAAAAHH------------LHRRSFLSTGLFSSSSSSSSIGGAAWEKRVRQSSTAKRPH 110
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
G++VLVTGAAGFVGSHCSLAL+KRGDGVLG DNFN YYDPSLKRARQ+LL+K QVFIVEG
Sbjct: 111 GLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEG 170
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
DLND PLL KLFDVVPFTH+LHLAAQAGVRYAM+NPQSY+ASNIAGFVNLLEV K+ NPQ
Sbjct: 171 DLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQ 230
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
P+IVWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRF
Sbjct: 231 PAIVWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRF 290
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357
FTVYGPWGRPDMAYFFFTKDIL GK+ID+Y+TQD++EVARDFTYIDD+VKGCVGALDTA
Sbjct: 291 FTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAE 350
Query: 358 KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTH 417
KSTGSGGKKRG AQLRVYNLGNTSPVPVGRLVSILE LL TKAKKH+I+MPRNGDVPYTH
Sbjct: 351 KSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTH 410
Query: 418 ANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKE 459
ANVSLAYKDFGYKPTTDLAAGLRKFVKWYV YYGIQPRVKKE
Sbjct: 411 ANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYYGIQPRVKKE 452
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 6 |
| >sp|Q9LPC1|GAE2_ARATH UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 590 bits (1521), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/428 (67%), Positives = 339/428 (79%), Gaps = 28/428 (6%)
Query: 23 LHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSDNTGESGDNNSNNKNNPRNLFTH 82
LH T+ S +KL F + + L+ I F+ P+S N ++ R+L T
Sbjct: 24 LHRTRWQSSVAKLAFWSLVFFGLLFIFFY---RSPIS-----------NPDSSRRSLRT- 68
Query: 83 QHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRG 142
+S GG WEK+VR SA R NG++VLVTGAAGFVG+H S ALK+RG
Sbjct: 69 -------------YSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRG 115
Query: 143 DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAA 202
DGVLGLDNFN YYD SLKR+RQ LL++ VFIVEGD+ND LL KLF+VVPFTHV+HLAA
Sbjct: 116 DGVLGLDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAA 175
Query: 203 QAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262
QAGVRYAM+NP SYV SNIAGFVNLLEVCKS NPQP+IVWASSSSVYGLNT+VPFSE R
Sbjct: 176 QAGVRYAMENPGSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDR 235
Query: 263 TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK 322
TDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFT+DIL+GK
Sbjct: 236 TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGK 295
Query: 323 TIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSP 382
I +++ + VARDFTYIDD+VKGC+GALDTA KSTGSGGKKRG AQLRV+NLGNTSP
Sbjct: 296 AISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSP 355
Query: 383 VPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKF 442
VPV LVSILE LL KAK++++++PRNGDVP+THAN+S A ++FGYKP+TDL GL+KF
Sbjct: 356 VPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKF 415
Query: 443 VKWYVSYY 450
V+WY+ YY
Sbjct: 416 VRWYLGYY 423
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|O81312|GAE3_ARATH UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 588 bits (1516), Expect = e-167, Method: Compositional matrix adjust.
Identities = 287/428 (67%), Positives = 336/428 (78%), Gaps = 26/428 (6%)
Query: 23 LHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSDNTGESGDNNSNNKNNPRNLFTH 82
H T+ S +KL F + + + L+ I F+ P+S N + + R+L T
Sbjct: 21 FHRTRWQSSVAKLAFWSLVFVGLIFIFFY---RSPVSSNPADP---------SRRSLRT- 67
Query: 83 QHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRG 142
+S GG WEK+VR SA R G +VLVTGAAGFVG+H S ALK+RG
Sbjct: 68 -------------YSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRG 114
Query: 143 DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAA 202
DGVLGLDNFN YYDPSLKRARQ LL++ VF+VEGD+NDA LL KLF+VVPFTHV+HLAA
Sbjct: 115 DGVLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAA 174
Query: 203 QAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262
QAGVRYAM+NP SYV SNIAGFVNLLEVCKS NPQP+IVWASSSSVYGLNT+VPFSE R
Sbjct: 175 QAGVRYAMENPSSYVHSNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDR 234
Query: 263 TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK 322
TDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFT+DIL+GK
Sbjct: 235 TDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGK 294
Query: 323 TIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSP 382
I +++ + VARDFTYIDD+VKGC+GALDTA KSTGSGGKKRG AQLRV+NLGNTSP
Sbjct: 295 AISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSP 354
Query: 383 VPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKF 442
VPV LV+ILE LL KAK++++++PRNGDV +THAN+S A ++ GYKPTTDL GL+KF
Sbjct: 355 VPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKF 414
Query: 443 VKWYVSYY 450
+WY+ YY
Sbjct: 415 ARWYLGYY 422
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|O22141|GAE4_ARATH UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 585 bits (1508), Expect = e-166, Method: Compositional matrix adjust.
Identities = 273/354 (77%), Positives = 312/354 (88%), Gaps = 2/354 (0%)
Query: 99 GGAEWEKQVRHSATPRRP--NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD 156
GG WEK++R SA R NG+TVLVTGAAGFVG+H S ALK+RGDGV+GLDNFN YYD
Sbjct: 75 GGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLDNFNDYYD 134
Query: 157 PSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSY 216
PSLKRAR+ LL++ +FIVEGD+ND LL KLF +V FTHV+HLAAQAGVRYAM+NP SY
Sbjct: 135 PSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSY 194
Query: 217 VASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276
V SNIAGFVNLLE+CKSVNPQP+IVWASSSSVYGLNT+VPFSE +TDQPASLYAATKKA
Sbjct: 195 VHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDKTDQPASLYAATKKA 254
Query: 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336
GEEIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFTKDIL+GK+I ++++ + VA
Sbjct: 255 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFESANHGTVA 314
Query: 337 RDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL 396
RDFTYIDD+VKGC+ ALDTA KSTGSGGKKRGPAQLRV+NLGNTSPVPV LV ILE L
Sbjct: 315 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQL 374
Query: 397 NTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
KAKK++I+MPRNGDVP+THAN+SLA ++ GYKPTTDL GL+KFV+WY+SYY
Sbjct: 375 KVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 428
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q9STI6|GAE5_ARATH UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 560 bits (1443), Expect = e-158, Method: Compositional matrix adjust.
Identities = 275/361 (76%), Positives = 311/361 (86%), Gaps = 3/361 (0%)
Query: 93 SSSFST---GGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD 149
SSS S GG+ WEKQVR SA PR G+TVLVTGA+GFVG+H S+AL++RGDGVLGLD
Sbjct: 67 SSSISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGLD 126
Query: 150 NFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYA 209
NFN YYDP LKRARQ LL++ VF+VEGD+NDA LL KLFDVV FTHV+HLAAQAGVRYA
Sbjct: 127 NFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYA 186
Query: 210 MQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASL 269
MQNP SYV SNIAGFVNLLEV KS NPQP+IVWASSSSVYGLN++VPFSE RTDQPASL
Sbjct: 187 MQNPGSYVNSNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASL 246
Query: 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKT 329
YAATKKAGE IAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFTKDIL+GKTI V+++
Sbjct: 247 YAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFES 306
Query: 330 QDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLV 389
D VARDFTYIDD+VKGC+GALDTA KSTGSGGKK+GPA R+YNLGNTSPVPV +LV
Sbjct: 307 PDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLV 366
Query: 390 SILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 449
+ILE LL KAKK ++ +PRNGDV +THAN++LA + GYKP DL GL+KFVKWY+ +
Sbjct: 367 TILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYMGF 426
Query: 450 Y 450
Y
Sbjct: 427 Y 427
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|Q9M0B6|GAE1_ARATH UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1406), Expect = e-154, Method: Compositional matrix adjust.
Identities = 285/453 (62%), Positives = 339/453 (74%), Gaps = 36/453 (7%)
Query: 5 PDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSDNTGE 64
P T K++R N R+LH + S+S +F A LIAL
Sbjct: 10 PSTPGKFKIDRSN---RQLH--RCFASTSTMFLWALFLIALTA----------------- 47
Query: 65 SGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMTVLVT 124
+ + Q + S S + ++ S GG +WEKQVR SA R G++VLVT
Sbjct: 48 -------------SYLSFQSFVDSGSRYLTA-SWGGIQWEKQVRTSAQIHRSGGISVLVT 93
Query: 125 GAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL 184
GA GFVGSH SLAL+KRGDGV+GLDNFN+YYDPSLKRAR+ LL +F+VEGDLNDA L
Sbjct: 94 GATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKL 153
Query: 185 LTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244
L KLFDVV FTHV+HLAAQAGVRYA++NPQSYV SNIAG VNLLE+CK+ NPQP+IVWAS
Sbjct: 154 LAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHSNIAGLVNLLEICKAANPQPAIVWAS 213
Query: 245 SSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPW 304
SSSVYGLN +VPFSES RTDQPASLYAATKKAGEEI HTYNHIYGLA+TGLRFFTVYGPW
Sbjct: 214 SSSVYGLNEKVPFSESDRTDQPASLYAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPW 273
Query: 305 GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGG 364
GRPDMAYF FT++ILQGK I +Y+ ++ ++ARDFTYIDD+VKGC+G+LD++GKSTGSGG
Sbjct: 274 GRPDMAYFSFTRNILQGKPITIYRGKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGG 333
Query: 365 KKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAY 424
KKRG A R++NLGNTSPV V LV ILE L KAK++ + MP NGDVP+THAN+S A
Sbjct: 334 KKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSAR 393
Query: 425 KDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVK 457
+FGYKPTTDL GL+KFV+WY+SYYG + K
Sbjct: 394 NEFGYKPTTDLETGLKKFVRWYLSYYGYNTKAK 426
|
Involved in the synthesis of the negatively charged monosaccharide that forms the backbone of pectic cell wall components. Arabidopsis thaliana (taxid: 3702) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 6 |
| >sp|P39858|CAPI_STAAU Protein CapI OS=Staphylococcus aureus GN=capI PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (746), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 159/338 (47%), Positives = 217/338 (64%), Gaps = 12/338 (3%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +L+TG AGF+GSH + L K+G V+G+D+ N YY SLK R K + K +
Sbjct: 1 MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVK 60
Query: 179 LNDAPLLTKLF-DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
L + L+K+F D P V++LAAQAGVRY+++NP++Y+ SNI GF+N+LE + N Q
Sbjct: 61 LENYDDLSKVFVDEQPEV-VVNLAAQAGVRYSIENPRTYIDSNIVGFMNILECSRHFNIQ 119
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
++++ASSSSVYG NT PFS S D P SLYAATKK+ E +AHTY+H+Y L TGLRF
Sbjct: 120 -NLIYASSSSVYGANTSKPFSTSDNIDHPLSLYAATKKSNELMAHTYSHLYNLPTTGLRF 178
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT-A 356
FTVYGPWGRPDMA F FTK I+ + IDVY + + RDFTY+DD+V+ + A
Sbjct: 179 FTVYGPWGRPDMALFKFTKAIVNDQAIDVYNHGN---MMRDFTYVDDIVEAISRLVKKPA 235
Query: 357 GKSTGSGGKKRGP----AQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGD 412
+ G P A +VYN+GN SPV + V +EN L +A+K+ + + + GD
Sbjct: 236 SPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDL-QPGD 294
Query: 413 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
VP T+ANV ++D +KP T + G+ KFV WY+ YY
Sbjct: 295 VPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY 332
|
Required for the biosynthesis of type 1 capsular polysaccharide. Staphylococcus aureus (taxid: 1280) EC: 4 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q04871|YCL2_ECO11 Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 155/339 (45%), Positives = 210/339 (61%), Gaps = 10/339 (2%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M LVTGAAGF+G H S L + G V+G+DN N YYD SLK+AR +LL + + D
Sbjct: 1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKID 60
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D +T LF F V + VRY+++NP +Y SN+ GF+N+LE C+ N
Sbjct: 61 LADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNILEGCRH-NKIQ 119
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+++ASSSSVYGLN ++PFS D P SLYAATKKA E +AHTY+H+YGL TGLRFF
Sbjct: 120 HLLYASSSSVYGLNRKMPFSTDDSVDHPVSLYAATKKANELMAHTYSHLYGLPATGLRFF 179
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358
TVYGPWGRPDMA F FTK +L+GK+IDVY ++ RDFTYIDD+ + + D
Sbjct: 180 TVYGPWGRPDMALFKFTKAMLEGKSIDVYNYG---KMKRDFTYIDDIAEAIIRLQDVIPH 236
Query: 359 -----STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV 413
+ +G A RVYN+GN+SPV + + LE+ L +AKK+++ + + GDV
Sbjct: 237 ADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPL-QPGDV 295
Query: 414 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452
T A+ Y+ G+ P T + G++ FV WY +Y +
Sbjct: 296 LETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFYKV 334
|
Escherichia coli O111:H- (taxid: 168927) |
| >sp|Q58455|Y1055_METJA Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1055 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/332 (42%), Positives = 209/332 (62%), Gaps = 21/332 (6%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVE 176
+LVTG+AGF+G H S L + V+G+DN N+YY+P LK R ++L+ ++ + ++
Sbjct: 5 NILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIK 64
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
D +D L + ++HL AQAGVRY++QNP +Y+ SN G +N+ E + +
Sbjct: 65 LDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNIFEFARRFDI 124
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ +V+ASSSSVYG N ++PFSE R D+P SLYA+TK++ E +AH Y+H+YG+ + GLR
Sbjct: 125 E-KVVYASSSSVYGGNRKIPFSEDDRVDKPISLYASTKRSNELMAHVYHHLYGIKMIGLR 183
Query: 297 FFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356
FFTVYG +GRPDMAYF F K+IL GK I+VY + + RDFTYI DVV G + A+
Sbjct: 184 FFTVYGEYGRPDMAYFKFAKNILLGKEIEVYNYGN---MERDFTYISDVVDGILRAI--- 237
Query: 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYT 416
+ ++NLGN+ PV + + ++E LN KAKK + M ++GDV T
Sbjct: 238 ----------KKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPM-QDGDVLRT 286
Query: 417 HANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 448
+A++S + K GYKP + GL++F W++
Sbjct: 287 YADLSKSEKLLGYKPKVTIEEGLKRFCNWFLE 318
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) |
| >sp|O54067|LPSL_RHIME UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti (strain 1021) GN=lspL PE=3 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (633), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 134/339 (39%), Positives = 196/339 (57%), Gaps = 12/339 (3%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEG 177
M L+TG AGF+G H + L G V+G D YYD +LK R +LQ+ F V
Sbjct: 1 MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTA 60
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
L D L + ++ ++HLAAQAGVRY+++NP++YV +N+ G N+LE+ K++ P+
Sbjct: 61 MLEDRAALDRAAELAEPEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNMLELAKAIAPK 120
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
++ AS+SS+YG N ++PF+E+ R D+P +LYAATKK+ E +AH+Y H+Y + T RF
Sbjct: 121 -HLMLASTSSIYGANEKIPFAEADRADEPMTLYAATKKSMELMAHSYAHLYKVPTTSFRF 179
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357
FTVYGPWGRPDMA F F I G+ ID+Y + ++RDFTYIDD+V+ V
Sbjct: 180 FTVYGPWGRPDMALFKFVDAIHNGRPIDIY---GEGRMSRDFTYIDDLVESIVRLSHVPP 236
Query: 358 KSTGSGGKKRGP------AQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 411
++ A RV N G PV + V +E + A +++ M + G
Sbjct: 237 SEENRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPM-QQG 295
Query: 412 DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
DVP T A+ L G+KP+ + G+ +FV+WY Y
Sbjct: 296 DVPRTFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNY 334
|
Rhizobium meliloti (strain 1021) (taxid: 266834) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 476 | ||||||
| 224055839 | 457 | predicted protein [Populus trichocarpa] | 0.960 | 1.0 | 0.817 | 0.0 | |
| 224129172 | 456 | predicted protein [Populus trichocarpa] | 0.955 | 0.997 | 0.810 | 0.0 | |
| 225433491 | 451 | PREDICTED: UDP-glucuronate 4-epimerase 6 | 0.922 | 0.973 | 0.812 | 0.0 | |
| 357462761 | 447 | UDP-D-glucuronic acid 4-epimerase [Medic | 0.924 | 0.984 | 0.810 | 0.0 | |
| 449442397 | 463 | PREDICTED: UDP-glucuronate 4-epimerase 6 | 0.966 | 0.993 | 0.789 | 0.0 | |
| 388523005 | 447 | unknown [Medicago truncatula] | 0.924 | 0.984 | 0.808 | 0.0 | |
| 147854365 | 459 | hypothetical protein VITISV_041351 [Viti | 0.915 | 0.949 | 0.809 | 0.0 | |
| 84468266 | 451 | putative NAD dependent epimerase [Trifol | 0.947 | 1.0 | 0.789 | 0.0 | |
| 283488497 | 453 | UDP-D-glucuronic acid 4-epimerase [Gossy | 0.949 | 0.997 | 0.788 | 0.0 | |
| 297831166 | 461 | hypothetical protein ARALYDRAFT_898926 [ | 0.941 | 0.971 | 0.793 | 0.0 |
| >gi|224055839|ref|XP_002298679.1| predicted protein [Populus trichocarpa] gi|118482268|gb|ABK93061.1| unknown [Populus trichocarpa] gi|222845937|gb|EEE83484.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2073), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/476 (81%), Positives = 428/476 (89%), Gaps = 19/476 (3%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKTIKLERYNSYLRRLH TK+L++SSKL FRAT+LIALVLILFFTLN+PPLSD
Sbjct: 1 MASPPDTSKTIKLERYNSYLRRLHSTKVLNASSKLLFRATLLIALVLILFFTLNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
N P + H H+ LS++FF+SS + GGA WEKQVRHS+TP+R NG++
Sbjct: 61 NI-------------PNHAHLHHHNFLSTAFFTSS-AGGGAAWEKQVRHSSTPKRRNGLS 106
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP+LKRARQKLL +H+VFIVEGDLN
Sbjct: 107 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPTLKRARQKLLLRHEVFIVEGDLN 166
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DA LL KLFDVVPFTH+LHLAAQAGVRYAMQNPQSYV+SNIAGFVNLLEV K+ NPQP+I
Sbjct: 167 DASLLRKLFDVVPFTHILHLAAQAGVRYAMQNPQSYVSSNIAGFVNLLEVAKAANPQPAI 226
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNTQVPFSE RTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 227 VWASSSSVYGLNTQVPFSELDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 286
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKST 360
YGPWGRPDMAYFFFTKDILQGK IDVY+TQDD++VARDFTYIDDVVKGC+GALDTA KST
Sbjct: 287 YGPWGRPDMAYFFFTKDILQGKPIDVYQTQDDKQVARDFTYIDDVVKGCLGALDTAEKST 346
Query: 361 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 420
GSGGKK+GPAQLRVYNLGNTSPVPV LVSILE LL+TKAKKHVI+MPRNGDVPYTHANV
Sbjct: 347 GSGGKKKGPAQLRVYNLGNTSPVPVANLVSILEGLLSTKAKKHVIKMPRNGDVPYTHANV 406
Query: 421 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTSTIQHPDESA 476
+LA+KDFGYKP+TDLA GLRKFVKWYV+YYGIQ RVKK + ++ +HP+ESA
Sbjct: 407 TLAFKDFGYKPSTDLATGLRKFVKWYVNYYGIQTRVKKGSAINS-----EHPEESA 457
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129172|ref|XP_002328908.1| predicted protein [Populus trichocarpa] gi|222839338|gb|EEE77675.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/475 (81%), Positives = 424/475 (89%), Gaps = 20/475 (4%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPP TSKT+KLERYNSYLRRLH TK+L++SSKL FR T+LIALVLILFFTLN+PPLSD
Sbjct: 1 MASPPHTSKTLKLERYNSYLRRLHSTKVLNASSKLIFRVTLLIALVLILFFTLNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
NP + H H+ LS++ F+SS GG WEKQVRHS+TP++PNG++
Sbjct: 61 K-------------NPNHAHLHHHNFLSAALFTSS--AGGDAWEKQVRHSSTPKKPNGLS 105
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCS+ALKKRGDGVLGLDNFNSYYDPSLKRARQKLL K+QVFIVEGDLN
Sbjct: 106 VLVTGAAGFVGSHCSIALKKRGDGVLGLDNFNSYYDPSLKRARQKLLLKNQVFIVEGDLN 165
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DA LLTKLFDVVPFTH+LHLAAQAGVRYAMQNPQSYV+SNIAGFVNLLEV K+ NPQP+I
Sbjct: 166 DASLLTKLFDVVPFTHILHLAAQAGVRYAMQNPQSYVSSNIAGFVNLLEVAKTANPQPAI 225
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNTQVPFSE RTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 226 VWASSSSVYGLNTQVPFSELDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 285
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKST 360
YGPWGRPDMAYFFFTKDILQGK IDVY+TQD ++VARDFTYIDDVVKGC+GALDTA KST
Sbjct: 286 YGPWGRPDMAYFFFTKDILQGKPIDVYQTQDKKQVARDFTYIDDVVKGCLGALDTAEKST 345
Query: 361 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 420
GSGGKK+GPAQLRVYNLGNTSPVPVG+LVSILE LL TKA+KHVI+MPRNGDVPYTHANV
Sbjct: 346 GSGGKKKGPAQLRVYNLGNTSPVPVGKLVSILEGLLRTKARKHVIKMPRNGDVPYTHANV 405
Query: 421 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTSTIQHPDES 475
+LAY+DFGYKPTTDLA GLRKFVKWYV YYGIQ RVKK++ ++ +HP+ES
Sbjct: 406 TLAYRDFGYKPTTDLATGLRKFVKWYVDYYGIQTRVKKDSDINS-----EHPEES 455
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225433491|ref|XP_002265088.1| PREDICTED: UDP-glucuronate 4-epimerase 6 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/459 (81%), Positives = 409/459 (89%), Gaps = 20/459 (4%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKT KLERYNSY+RR++ TK++ +SSKL FRAT+L+ALVLI FFTLN+PPLSD
Sbjct: 1 MASPPDTSKTTKLERYNSYIRRVNSTKLMAASSKLLFRATLLVALVLIFFFTLNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
N P ++ THQ+ F SS+F GA WEKQVRHS+TPRRPNG +
Sbjct: 61 N--------------PHHVLTHQN------FLSSAFYGSGASWEKQVRHSSTPRRPNGFS 100
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGA GFVG+HCSLALKKRGDGVLGLDNFN YYDPSLKRARQ +L KHQ+FIVEGDLN
Sbjct: 101 VLVTGAGGFVGTHCSLALKKRGDGVLGLDNFNDYYDPSLKRARQAMLSKHQIFIVEGDLN 160
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DAPLL+KLFD+VPFTH+LHLAAQAGVRYAMQNPQSYV SNIAGFVNLLE+ K+ +PQP+I
Sbjct: 161 DAPLLSKLFDMVPFTHILHLAAQAGVRYAMQNPQSYVRSNIAGFVNLLEIAKAADPQPAI 220
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 221 VWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 280
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKST 360
YGPWGRPDMAYFFFTKDILQGK I +Y+TQDD+EVARDFTYIDDVVKGC+GALDTA KST
Sbjct: 281 YGPWGRPDMAYFFFTKDILQGKPITIYQTQDDKEVARDFTYIDDVVKGCLGALDTAEKST 340
Query: 361 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 420
GSGGKKRGPAQLR+YNLGNTSPVPVGRLV ILE LLN KAKKHVI+MPRNGDVPYTHANV
Sbjct: 341 GSGGKKRGPAQLRIYNLGNTSPVPVGRLVGILEGLLNVKAKKHVIKMPRNGDVPYTHANV 400
Query: 421 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKE 459
SLAY+DFGYKP+TDLA GLR+FVKWYVSYYGIQ RVKKE
Sbjct: 401 SLAYRDFGYKPSTDLATGLRRFVKWYVSYYGIQTRVKKE 439
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357462761|ref|XP_003601662.1| UDP-D-glucuronic acid 4-epimerase [Medicago truncatula] gi|355490710|gb|AES71913.1| UDP-D-glucuronic acid 4-epimerase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/460 (81%), Positives = 410/460 (89%), Gaps = 20/460 (4%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKTIKLERYNSY+R+++ TK+L++SSKL FRAT+LIALVL+ FFT N+PPLSD
Sbjct: 1 MASPPDTSKTIKLERYNSYIRKVNSTKLLNASSKLLFRATLLIALVLVFFFTFNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
+T + TH H F +S+F GGA WE+ VRHSA PRRPNG T
Sbjct: 61 STNH-------------HFHTHSH------FLTSAFGGGGA-WERHVRHSAIPRRPNGFT 100
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCSLALKKRGDGV+GLDNFNSYYDPSLKRARQ LL +HQ+FIVEGDLN
Sbjct: 101 VLVTGAAGFVGSHCSLALKKRGDGVIGLDNFNSYYDPSLKRARQALLTQHQIFIVEGDLN 160
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DAPLLTKLFDVVP TH+LHLAAQAGVRYAMQNPQSY+ SNIAGFVNLLEV K+ NPQP+I
Sbjct: 161 DAPLLTKLFDVVPITHILHLAAQAGVRYAMQNPQSYIKSNIAGFVNLLEVSKAANPQPAI 220
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 221 VWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 280
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKST 360
YGPWGRPDMAYFFFTKDIL GKTIDVY+TQ+ +EVARDFTYIDD+VKGCVGALDTA KST
Sbjct: 281 YGPWGRPDMAYFFFTKDILHGKTIDVYQTQEGKEVARDFTYIDDIVKGCVGALDTAEKST 340
Query: 361 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 420
GSGGKK+GPAQLR+YNLGNTSPVPVG+LVSILENLL+TKAKKH+I+MPRNGDVPYTHANV
Sbjct: 341 GSGGKKKGPAQLRIYNLGNTSPVPVGKLVSILENLLSTKAKKHIIKMPRNGDVPYTHANV 400
Query: 421 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKEN 460
++AYKDF YKPTTDLA GLRKFVKWYV YYGIQ R+KKEN
Sbjct: 401 TMAYKDFAYKPTTDLATGLRKFVKWYVRYYGIQSRLKKEN 440
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442397|ref|XP_004138968.1| PREDICTED: UDP-glucuronate 4-epimerase 6-like [Cucumis sativus] gi|449519212|ref|XP_004166629.1| PREDICTED: UDP-glucuronate 4-epimerase 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2013), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/476 (78%), Positives = 421/476 (88%), Gaps = 16/476 (3%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKT+KLERYNSYLR+++ TK++++SSKL FRAT+L+ALVL+ FTLN+PPLS
Sbjct: 4 MASPPDTSKTLKLERYNSYLRKVNSTKLINASSKLLFRATLLVALVLVFIFTLNYPPLSS 63
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
G SG++ L TH++ LSS+F+ S GGA WEKQVRHS+TPRR NGM+
Sbjct: 64 ENGSSGNH----------LHTHRN-FLSSAFYGGS-DQGGAAWEKQVRHSSTPRRLNGMS 111
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCS+ALKKRGDGVLGLDNFN+YYDPSLKRARQ LL KHQ+FIVEGDLN
Sbjct: 112 VLVTGAAGFVGSHCSMALKKRGDGVLGLDNFNNYYDPSLKRARQSLLLKHQIFIVEGDLN 171
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DA LL+KLFDVVPFTH+LHLAAQAGVRYAMQNPQSY+ SNIAGFVNLLEV K+ +PQP+I
Sbjct: 172 DAALLSKLFDVVPFTHILHLAAQAGVRYAMQNPQSYINSNIAGFVNLLEVAKTADPQPAI 231
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 232 VWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 291
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKST 360
YGPWGRPDMAYFFFTKDILQGK ID+YKT D +EVARDFTYIDD+VKGC+GALDTA KST
Sbjct: 292 YGPWGRPDMAYFFFTKDILQGKQIDIYKTHDAKEVARDFTYIDDIVKGCLGALDTAEKST 351
Query: 361 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 420
GSGGKK+GPAQLR+YNLGNTSPVPVG+LVS+LENLLNTKAKKH+I MPRNGDVP+THANV
Sbjct: 352 GSGGKKKGPAQLRIYNLGNTSPVPVGKLVSVLENLLNTKAKKHIITMPRNGDVPFTHANV 411
Query: 421 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTSTIQHPDESA 476
SLA KDFGYKPTTDL GLRKFVKWYV YYGIQ RV+KE+ + S P+ESA
Sbjct: 412 SLALKDFGYKPTTDLPTGLRKFVKWYVGYYGIQSRVRKESEKNNNHS----PEESA 463
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388523005|gb|AFK49564.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/460 (80%), Positives = 409/460 (88%), Gaps = 20/460 (4%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKTIKLERYNSY+R+++ TK+L++SSKL FRAT+LIALVL+ FFT N+PPLSD
Sbjct: 1 MASPPDTSKTIKLERYNSYIRKVNSTKLLNASSKLLFRATLLIALVLVFFFTFNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
+T + TH H F +S+F GGA WE+ VRHSA PRRPNG T
Sbjct: 61 STNH-------------HFHTHSH------FLTSAFGGGGA-WERHVRHSAIPRRPNGFT 100
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCSLALKKRGDGV+GLDNFNSYYDPSLKRARQ LL +HQ+FIVEGDLN
Sbjct: 101 VLVTGAAGFVGSHCSLALKKRGDGVIGLDNFNSYYDPSLKRARQALLTQHQIFIVEGDLN 160
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DAPLLTKLFDVVP TH+LHLAAQAGVRYAMQNPQSY+ SNIAGFVNLLEV K+ NPQP+I
Sbjct: 161 DAPLLTKLFDVVPITHILHLAAQAGVRYAMQNPQSYIKSNIAGFVNLLEVSKAANPQPAI 220
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFT
Sbjct: 221 VWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTA 280
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKST 360
YGPWGRPDMAYFFFTKDIL GKTIDVY+TQ+ +EVARDFTYIDD+VKGCVGALDTA KST
Sbjct: 281 YGPWGRPDMAYFFFTKDILHGKTIDVYQTQEGKEVARDFTYIDDIVKGCVGALDTAEKST 340
Query: 361 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 420
GSGGKK+GPAQLR+YNLGNTSPVPVG+LVSILENLL+TKAKKH+I+MPRNGDVPYTHANV
Sbjct: 341 GSGGKKKGPAQLRIYNLGNTSPVPVGKLVSILENLLSTKAKKHIIKMPRNGDVPYTHANV 400
Query: 421 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKEN 460
++AYKDF YKPTTDLA GLRKFVKWYV YYGIQ R+KKEN
Sbjct: 401 TMAYKDFAYKPTTDLATGLRKFVKWYVRYYGIQSRLKKEN 440
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147854365|emb|CAN83418.1| hypothetical protein VITISV_041351 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/456 (80%), Positives = 406/456 (89%), Gaps = 20/456 (4%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKT KLERYNSY+RR++ TK++ +SSKL FRAT+L+ALVLI FFTLN+PPLSD
Sbjct: 1 MASPPDTSKTTKLERYNSYIRRVNSTKLMAASSKLLFRATLLVALVLIFFFTLNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
N P ++ THQ+ F SS+F GA WEKQVRHS+TPRRPNG +
Sbjct: 61 N--------------PHHVLTHQN------FLSSAFYGSGASWEKQVRHSSTPRRPNGFS 100
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGA GFVG+HCSLALKKRGDGVLGLDNFN YYDPSLKRARQ +L KHQ+FIVEGDLN
Sbjct: 101 VLVTGAGGFVGTHCSLALKKRGDGVLGLDNFNDYYDPSLKRARQAMLSKHQIFIVEGDLN 160
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
DAPLL+KLFD+VPFTH+LHLAAQAGVRYAMQNPQSYV SNIAGFVNLLE+ K+ +PQP+I
Sbjct: 161 DAPLLSKLFDMVPFTHILHLAAQAGVRYAMQNPQSYVRSNIAGFVNLLEIAKAADPQPAI 220
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 221 VWASSSSVYGLNTENPFSELHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 280
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKST 360
YGPWGRPDMAYFFFTKDILQGK I +Y+TQDD+EVARDFTYIDDVVKGC+GALDTA KST
Sbjct: 281 YGPWGRPDMAYFFFTKDILQGKPITIYQTQDDKEVARDFTYIDDVVKGCLGALDTAEKST 340
Query: 361 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 420
GSGGKKRGPAQLR+YNLGNTSPVPVGRLV ILE LLN KAKKHVI+MPRNGDVPYTHANV
Sbjct: 341 GSGGKKRGPAQLRIYNLGNTSPVPVGRLVGILEGLLNVKAKKHVIKMPRNGDVPYTHANV 400
Query: 421 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRV 456
SLAY+DFGYKP+TDLA GLR+FVKWYVSYYGIQ R+
Sbjct: 401 SLAYRDFGYKPSTDLATGLRRFVKWYVSYYGIQTRL 436
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|84468266|dbj|BAE71216.1| putative NAD dependent epimerase [Trifolium pratense] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1990), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/476 (78%), Positives = 412/476 (86%), Gaps = 25/476 (5%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
MASPPDTSKTIKLERYNSY+R+++ TK+L++SSKL FRAT+LIALVL+ FFT N+PPLSD
Sbjct: 1 MASPPDTSKTIKLERYNSYIRKVNSTKLLNASSKLLFRATLLIALVLVFFFTFNYPPLSD 60
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMT 120
T H S F +S+F GGA WE+QVRHSATPRRPNG T
Sbjct: 61 TT-------------------SHHFHTHSHFLTSAFGGGGA-WERQVRHSATPRRPNGFT 100
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCSLALKKRGDGV+GLDNFN+YYDPSLKRARQ LL +HQ+FIVEGDLN
Sbjct: 101 VLVTGAAGFVGSHCSLALKKRGDGVIGLDNFNNYYDPSLKRARQDLLSQHQIFIVEGDLN 160
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D PLL+KLFDVVP TH+LHLAAQAGVRYAMQNPQSY+ SNIAGFVNLLEV K+ NPQPSI
Sbjct: 161 DGPLLSKLFDVVPITHILHLAAQAGVRYAMQNPQSYIKSNIAGFVNLLEVSKTANPQPSI 220
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE RTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 221 VWASSSSVYGLNTENPFSELDRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 280
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKST 360
YGPWGRPDMAYFFFTKDIL GKTIDVY+TQD +EVARDFTYIDD+VKGCVGALDTA KST
Sbjct: 281 YGPWGRPDMAYFFFTKDILHGKTIDVYQTQDGKEVARDFTYIDDIVKGCVGALDTAEKST 340
Query: 361 GSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 420
GSGGKK+GPAQLR+YNLGNTSPVPVG+LV+ILENLL TKAKKHVI+MPRNGDVPYTHANV
Sbjct: 341 GSGGKKKGPAQLRIYNLGNTSPVPVGKLVTILENLLTTKAKKHVIKMPRNGDVPYTHANV 400
Query: 421 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTSTIQHPDESA 476
+LAY+DFGYKP TDL+ GLRKFVKWYV YYGIQPR+KKEN + PD SA
Sbjct: 401 TLAYRDFGYKPVTDLSTGLRKFVKWYVRYYGIQPRLKKENRIDN-----EQPDGSA 451
|
Source: Trifolium pratense Species: Trifolium pratense Genus: Trifolium Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|283488497|gb|ADB24770.1| UDP-D-glucuronic acid 4-epimerase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/473 (78%), Positives = 412/473 (87%), Gaps = 21/473 (4%)
Query: 4 PPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSDNTG 63
P DTSK +KLERYNSY+R++H TK+L++SSK FR T+LIALVLILFFT+N+PPLSDNT
Sbjct: 2 PTDTSKPMKLERYNSYIRKVHSTKLLNASSKFLFRVTLLIALVLILFFTINYPPLSDNTH 61
Query: 64 ESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNGMTVLV 123
+ ++ +HS LS+S FS S GGA WEKQVRHS+TPRR NG +VLV
Sbjct: 62 SAPHHHH------------RHSFLSTSLFSGSSLVGGAAWEKQVRHSSTPRRVNGFSVLV 109
Query: 124 TGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP 183
TGAAGF+GSHCSLALKKRGDGVLGLDNFN YYDPSLKRARQ LL KHQ+FIVEGDLND P
Sbjct: 110 TGAAGFIGSHCSLALKKRGDGVLGLDNFNDYYDPSLKRARQNLLSKHQIFIVEGDLNDGP 169
Query: 184 LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243
LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYV SNIAGFVNLLEV K+VNPQP+IVWA
Sbjct: 170 LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVKSNIAGFVNLLEVAKAVNPQPAIVWA 229
Query: 244 SSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGP 303
SSSSVYGLNT+ PFSE RTD+PASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTVYGP
Sbjct: 230 SSSSVYGLNTENPFSERDRTDRPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGP 289
Query: 304 WGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSG 363
WGRPDMAYFFFTKDILQGK ID+Y+TQD + VARDFTYIDDVVKGC+GALDTA KSTGSG
Sbjct: 290 WGRPDMAYFFFTKDILQGKPIDIYRTQDQKAVARDFTYIDDVVKGCLGALDTAEKSTGSG 349
Query: 364 GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLA 423
GKK+GPAQLRVYNLGNTSPVPVGRLVSILE LLNTKAKKHV+ +PRNGDVPYTHANV+LA
Sbjct: 350 GKKKGPAQLRVYNLGNTSPVPVGRLVSILEGLLNTKAKKHVVTLPRNGDVPYTHANVTLA 409
Query: 424 YKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTSTIQHPDESA 476
YKDFGYKPTTDL++GLRKFVKWYV+Y+GI+ + KE QH DES+
Sbjct: 410 YKDFGYKPTTDLSSGLRKFVKWYVNYFGIESKHSKET---------QHFDESS 453
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297831166|ref|XP_002883465.1| hypothetical protein ARALYDRAFT_898926 [Arabidopsis lyrata subsp. lyrata] gi|297329305|gb|EFH59724.1| hypothetical protein ARALYDRAFT_898926 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/464 (79%), Positives = 412/464 (88%), Gaps = 16/464 (3%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
+++ DTSKT+KLERYNSYLR++H TK+L++SSK+ FRAT+L+ALVL+L F +N+PPLSD
Sbjct: 3 LSATADTSKTVKLERYNSYLRKIHSTKVLNASSKVLFRATLLVALVLVLLFAINYPPLSD 62
Query: 61 NTGESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFS----TGGAEWEKQVRHSATPRRP 116
+ + + H+ S LS+ FSSS S GGA WEK+VR S+T +RP
Sbjct: 63 SRAAAAHH------------LHRRSFLSTGLFSSSSSSSSSIGGAAWEKRVRQSSTAKRP 110
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
+G++VLVTGAAGFVGSHCSLAL+KRGDGVLG DNFN YYDPSLKRARQ+LL+K QVFIVE
Sbjct: 111 HGLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVE 170
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GDLND PLL KLFDVVPFTH+LHLAAQAGVRYAM+NPQSY+ASNIAGFVNLLEV K+ NP
Sbjct: 171 GDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANP 230
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
QP+IVWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLR
Sbjct: 231 QPAIVWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLR 290
Query: 297 FFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356
FFTVYGPWGRPDMAYFFFTKDIL GK+ID+Y+TQD++EVARDFTYIDD+VKGCVGALDTA
Sbjct: 291 FFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTA 350
Query: 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYT 416
KSTGSGGKKRG AQLRVYNLGNTSPVPVGRLVSILE LL TKAKKH+I+MPRNGDVPYT
Sbjct: 351 EKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYT 410
Query: 417 HANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKEN 460
HANVSLAYKDFGYKPTTDLAAGLRKFVKWYV YYGIQPRVKKEN
Sbjct: 411 HANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYYGIQPRVKKEN 454
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 476 | ||||||
| TAIR|locus:2076066 | 460 | GAE6 "UDP-D-glucuronate 4-epim | 0.945 | 0.978 | 0.760 | 1.1e-190 | |
| TAIR|locus:2050921 | 437 | GAE4 "UDP-D-glucuronate 4-epim | 0.739 | 0.805 | 0.740 | 2.5e-147 | |
| TAIR|locus:2025472 | 434 | GAE2 "UDP-D-glucuronate 4-epim | 0.739 | 0.811 | 0.744 | 4.2e-143 | |
| TAIR|locus:2126846 | 430 | GAE3 "UDP-D-glucuronate 4-epim | 0.739 | 0.818 | 0.738 | 2.3e-142 | |
| TAIR|locus:2139134 | 436 | GAE5 "UDP-D-glucuronate 4-epim | 0.739 | 0.807 | 0.741 | 2.3e-142 | |
| TAIR|locus:2118711 | 429 | GAE1 "UDP-D-glucuronate 4-epim | 0.754 | 0.836 | 0.704 | 5.6e-139 | |
| TIGR_CMR|GSU_2241 | 336 | GSU_2241 "capsular polysacchar | 0.689 | 0.976 | 0.486 | 3.3e-79 | |
| TIGR_CMR|CBU_0844 | 339 | CBU_0844 "capsular polysacchar | 0.686 | 0.964 | 0.482 | 9e-77 | |
| UNIPROTKB|Q8E8H8 | 335 | wcvA "UDP-glucuronate 4-epimer | 0.686 | 0.976 | 0.479 | 2.2e-73 | |
| TIGR_CMR|SO_4686 | 335 | SO_4686 "NAD dependent epimera | 0.686 | 0.976 | 0.479 | 2.2e-73 |
| TAIR|locus:2076066 GAE6 "UDP-D-glucuronate 4-epimerase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1848 (655.6 bits), Expect = 1.1e-190, P = 1.1e-190
Identities = 349/459 (76%), Positives = 391/459 (85%)
Query: 1 MASPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSD 60
+++ DTSKT+KLERYNSYLR++H TK+L++SSK+ FRAT+L+ALVL+L F +N+PPLSD
Sbjct: 3 LSATADTSKTVKLERYNSYLRKIHSTKVLNASSKVLFRATLLVALVLVLIFAINYPPLSD 62
Query: 61 NTGESGDXXXXXXXXXXXLFTHQHXXXXXXXXXXXXXTGGAEWEKQVRHSATPRRPNGMT 120
+ + LF+ GGA WEK+VR S+T +RP+G++
Sbjct: 63 SRAAAAHHLHRRSFLSTGLFS---------SSSSSSSIGGAAWEKRVRQSSTAKRPHGLS 113
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGAAGFVGSHCSLAL+KRGDGVLG DNFN YYDPSLKRARQ+LL+K QVFIVEGDLN
Sbjct: 114 VLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEGDLN 173
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D PLL KLFDVVPFTH+LHLAAQAGVRYAM+NPQSY+ASNIAGFVNLLEV K+ NPQP+I
Sbjct: 174 DGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLLEVAKAANPQPAI 233
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
VWASSSSVYGLNT+ PFSE HRTDQPASLYAATKKAGEEIAHTYNHIYGL+LTGLRFFTV
Sbjct: 234 VWASSSSVYGLNTENPFSEEHRTDQPASLYAATKKAGEEIAHTYNHIYGLSLTGLRFFTV 293
Query: 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAXXXX 360
YGPWGRPDMAYFFFTKDIL GK+ID+Y+TQD++EVARDFTYIDD+VKGCVGALDTA
Sbjct: 294 YGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKST 353
Query: 361 XXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 420
AQLRVYNLGNTSPVPVGRLVSILE LL TKAKKH+I+MPRNGDVPYTHANV
Sbjct: 354 GSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANV 413
Query: 421 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKE 459
SLAYKDFGYKPTTDLAAGLRKFVKWYV YYGIQPRVKKE
Sbjct: 414 SLAYKDFGYKPTTDLAAGLRKFVKWYVGYYGIQPRVKKE 452
|
|
| TAIR|locus:2050921 GAE4 "UDP-D-glucuronate 4-epimerase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1401 (498.2 bits), Expect = 2.5e-147, Sum P(2) = 2.5e-147
Identities = 262/354 (74%), Positives = 301/354 (85%)
Query: 99 GGAEWEKQVRHSATPRRP--NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD 156
GG WEK++R SA R NG+TVLVTGAAGFVG+H S ALK+RGDGV+GLDNFN YYD
Sbjct: 75 GGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLDNFNDYYD 134
Query: 157 PSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSY 216
PSLKRAR+ LL++ +FIVEGD+ND LL KLF +V FTHV+HLAAQAGVRYAM+NP SY
Sbjct: 135 PSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSY 194
Query: 217 VASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276
V SNIAGFVNLLE+CKSVNPQP+IVWASSSSVYGLNT+VPFSE +TDQPASLYAATKKA
Sbjct: 195 VHSNIAGFVNLLEICKSVNPQPAIVWASSSSVYGLNTKVPFSEKDKTDQPASLYAATKKA 254
Query: 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336
GEEIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFTKDIL+GK+I ++++ + VA
Sbjct: 255 GEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFESANHGTVA 314
Query: 337 RDFTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLL 396
RDFTYIDD+VKGC+ ALDTA PAQLRV+NLGNTSPVPV LV ILE L
Sbjct: 315 RDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQL 374
Query: 397 NTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
KAKK++I+MPRNGDVP+THAN+SLA ++ GYKPTTDL GL+KFV+WY+SYY
Sbjct: 375 KVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 428
|
|
| TAIR|locus:2025472 GAE2 "UDP-D-glucuronate 4-epimerase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1399 (497.5 bits), Expect = 4.2e-143, P = 4.2e-143
Identities = 262/352 (74%), Positives = 300/352 (85%)
Query: 99 GGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS 158
GG WEK+VR SA R NG++VLVTGAAGFVG+H S ALK+RGDGVLGLDNFN YYD S
Sbjct: 72 GGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDTS 131
Query: 159 LKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA 218
LKR+RQ LL++ VFIVEGD+ND LL KLF+VVPFTHV+HLAAQAGVRYAM+NP SYV
Sbjct: 132 LKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVH 191
Query: 219 SNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278
SNIAGFVNLLEVCKS NPQP+IVWASSSSVYGLNT+VPFSE RTDQPASLYAATKKAGE
Sbjct: 192 SNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 251
Query: 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338
EIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFT+DIL+GK I +++ + VARD
Sbjct: 252 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGANHGTVARD 311
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
FTYIDD+VKGC+GALDTA AQLRV+NLGNTSPVPV LVSILE LL
Sbjct: 312 FTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILERLLKV 371
Query: 399 KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
KAK++++++PRNGDVP+THAN+S A ++FGYKP+TDL GL+KFV+WY+ YY
Sbjct: 372 KAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYLGYY 423
|
|
| TAIR|locus:2126846 GAE3 "UDP-D-glucuronate 4-epimerase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1392 (495.1 bits), Expect = 2.3e-142, P = 2.3e-142
Identities = 260/352 (73%), Positives = 297/352 (84%)
Query: 99 GGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS 158
GG WEK+VR SA R G +VLVTGAAGFVG+H S ALK+RGDGVLGLDNFN YYDPS
Sbjct: 71 GGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPS 130
Query: 159 LKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA 218
LKRARQ LL++ VF+VEGD+NDA LL KLF+VVPFTHV+HLAAQAGVRYAM+NP SYV
Sbjct: 131 LKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPSSYVH 190
Query: 219 SNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278
SNIAGFVNLLEVCKS NPQP+IVWASSSSVYGLNT+VPFSE RTDQPASLYAATKKAGE
Sbjct: 191 SNIAGFVNLLEVCKSANPQPAIVWASSSSVYGLNTKVPFSEKDRTDQPASLYAATKKAGE 250
Query: 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338
EIAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFT+DIL+GK I +++ + VARD
Sbjct: 251 EIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGVNHGTVARD 310
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
FTYIDD+VKGC+GALDTA AQLRV+NLGNTSPVPV LV+ILE LL
Sbjct: 311 FTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVTILERLLKV 370
Query: 399 KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
KAK++++++PRNGDV +THAN+S A ++ GYKPTTDL GL+KF +WY+ YY
Sbjct: 371 KAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGYY 422
|
|
| TAIR|locus:2139134 GAE5 "UDP-D-glucuronate 4-epimerase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1392 (495.1 bits), Expect = 2.3e-142, P = 2.3e-142
Identities = 261/352 (74%), Positives = 296/352 (84%)
Query: 99 GGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS 158
GG+ WEKQVR SA PR G+TVLVTGA+GFVG+H S+AL++RGDGVLGLDNFN YYDP
Sbjct: 76 GGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGLDNFNRYYDPK 135
Query: 159 LKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA 218
LKRARQ LL++ VF+VEGD+NDA LL KLFDVV FTHV+HLAAQAGVRYAMQNP SYV
Sbjct: 136 LKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYAMQNPGSYVN 195
Query: 219 SNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278
SNIAGFVNLLEV KS NPQP+IVWASSSSVYGLN++VPFSE RTDQPASLYAATKKAGE
Sbjct: 196 SNIAGFVNLLEVSKSANPQPAIVWASSSSVYGLNSKVPFSEKDRTDQPASLYAATKKAGE 255
Query: 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338
IAHTYNHIYGL+LTGLRFFTVYGPWGRPDMAYFFFTKDIL+GKTI V+++ D VARD
Sbjct: 256 GIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFESPDKGSVARD 315
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
FTYIDD+VKGC+GALDTA PA R+YNLGNTSPVPV +LV+ILE LL
Sbjct: 316 FTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLVTILEKLLKM 375
Query: 399 KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
KAKK ++ +PRNGDV +THAN++LA + GYKP DL GL+KFVKWY+ +Y
Sbjct: 376 KAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYMGFY 427
|
|
| TAIR|locus:2118711 GAE1 "UDP-D-glucuronate 4-epimerase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
Identities = 253/359 (70%), Positives = 295/359 (82%)
Query: 99 GGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS 158
GG +WEKQVR SA R G++VLVTGA GFVGSH SLAL+KRGDGV+GLDNFN+YYDPS
Sbjct: 68 GGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPS 127
Query: 159 LKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA 218
LKRAR+ LL +F+VEGDLNDA LL KLFDVV FTHV+HLAAQAGVRYA++NPQSYV
Sbjct: 128 LKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVH 187
Query: 219 SNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278
SNIAG VNLLE+CK+ NPQP+IVWASSSSVYGLN +VPFSES RTDQPASLYAATKKAGE
Sbjct: 188 SNIAGLVNLLEICKAANPQPAIVWASSSSVYGLNEKVPFSESDRTDQPASLYAATKKAGE 247
Query: 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338
EI HTYNHIYGLA+TGLRFFTVYGPWGRPDMAYF FT++ILQGK I +Y+ ++ ++ARD
Sbjct: 248 EITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRGKNRVDLARD 307
Query: 339 FTYIDDVVKGCVGALDTAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
FTYIDD+VKGC+G+LD++ A R++NLGNTSPV V LV ILE L
Sbjct: 308 FTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKV 367
Query: 399 KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVK 457
KAK++ + MP NGDVP+THAN+S A +FGYKPTTDL GL+KFV+WY+SYYG + K
Sbjct: 368 KAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLSYYGYNTKAK 426
|
|
| TIGR_CMR|GSU_2241 GSU_2241 "capsular polysaccharide biosynthesis protein I" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
Identities = 165/339 (48%), Positives = 218/339 (64%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEGD 178
++LVTGAAGF+G H + L RGD V+GLDN N YYD +LK R + L+ + F V
Sbjct: 3 SILVTGAAGFIGFHLTKRLLDRGDRVVGLDNLNDYYDVNLKLDRLRQLEGREGFSFVRTS 62
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D P L LF F V++LAAQAGVRY++ NP +YV SN+ GF+N+LE C+ +
Sbjct: 63 LADRPALEDLFAGQRFDVVVNLAAQAGVRYSITNPHAYVDSNLVGFINILEGCRHHGVK- 121
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+V+ASSSSVYG NT +PFS H D P SLYAATKKA E +AHTY+ +YGL TGLRFF
Sbjct: 122 HLVYASSSSVYGANTAMPFSIHHNVDHPVSLYAATKKANELMAHTYSSLYGLPTTGLRFF 181
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD-TAX 357
TVYGPWGRPDMA F FTK IL+G+ IDVY ++ RDFTY+DD+V+G +D T
Sbjct: 182 TVYGPWGRPDMALFLFTKAILEGRPIDVYNFG---KMQRDFTYVDDIVEGVTRVMDRTPE 238
Query: 358 XXXXXXXXXXXP----AQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV 413
P A R+YN+GN +PV + + +E L A+K+++ + + GDV
Sbjct: 239 PNPAWSGARPDPGTSYAPYRIYNIGNNNPVELLAFIEAIEQNLGITAQKNLLPL-QAGDV 297
Query: 414 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452
P T+A+V D G+KP T + G+ +FV+WY YYG+
Sbjct: 298 PATYADVDDLMNDVGFKPATPIGEGIERFVEWYRGYYGV 336
|
|
| TIGR_CMR|CBU_0844 CBU_0844 "capsular polysaccharide biosynthesis protein I" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
Identities = 163/338 (48%), Positives = 219/338 (64%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG- 177
M LVTG AGF+G H + L RGD +LGLDN N YYD +LK AR L++ F
Sbjct: 6 MRTLVTGCAGFIGFHLTKRLLARGDHILGLDNLNDYYDVNLKEARLAQLKEFPHFSFHKL 65
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
DL D +T LF F V+HLAAQAGVRY++ NP +YV SN+ GF ++LE C+ + +
Sbjct: 66 DLADRQGMTDLFQKHLFDTVVHLAAQAGVRYSLTNPYAYVDSNLVGFAHILEGCRHQSVK 125
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
+V+ASSSSVYG N + PFSES D P +LYAA+KKA E +AH+Y H++ L TGLRF
Sbjct: 126 -HLVFASSSSVYGANEKYPFSESDNVDHPIALYAASKKANELMAHSYAHLFQLPCTGLRF 184
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD-TA 356
FTVYGPWGRPDMA F FT+++L K IDVY + +++RDFTYIDD+V G + LD
Sbjct: 185 FTVYGPWGRPDMALFKFTRNLLADKPIDVY---NHGKMSRDFTYIDDIVDGILLTLDHPP 241
Query: 357 XXXXXXXXXXXXPAQ----LRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGD 412
PA+ R+YN+G+ +P+ + ++ILE LN KA K+ + + + GD
Sbjct: 242 EPNSAYSANQPNPAKSNAPYRIYNIGSNNPILLTNFIAILEKTLNKKAIKNFLPL-QPGD 300
Query: 413 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
VP T+A+VS KDF Y+P T L G++ FV+WY+ Y+
Sbjct: 301 VPETYADVSQLEKDFQYRPRTPLQKGVKNFVEWYLQYF 338
|
|
| UNIPROTKB|Q8E8H8 wcvA "UDP-glucuronate 4-epimerase WcvA" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 162/338 (47%), Positives = 209/338 (61%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEG 177
M LVTGAAGF+G++ S L G V+G+DN N YYD +LK AR L+ F ++
Sbjct: 1 MKYLVTGAAGFIGANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKL 60
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
DL D + KLF F V+HLAAQAGVRY++ NP +Y SN+ G + +LE C+ +
Sbjct: 61 DLADREGIAKLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIE 120
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
+V+ASSSSVYGLN ++PFS D P SLYAATKKA E ++HTY+H+Y L TGLRF
Sbjct: 121 -HLVYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRF 179
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD--- 354
FTVYGPWGRPDMA F FTK IL G+TIDVY D ++RDFTYIDD+V+G + D
Sbjct: 180 FTVYGPWGRPDMALFKFTKAILAGETIDVYNHGD---LSRDFTYIDDIVEGIIRVQDKPP 236
Query: 355 --TAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGD 412
T A RV+N+GN SPV + ++ LE L +AKK + M + GD
Sbjct: 237 SPTPDWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALERALGIEAKKQFLPM-QPGD 295
Query: 413 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
V T A+ +K GYK D+ G+ KFV WY ++Y
Sbjct: 296 VHATWADTEDLFKAVGYKSQVDIDTGVAKFVDWYRNFY 333
|
|
| TIGR_CMR|SO_4686 SO_4686 "NAD dependent epimerase/dehydratase family protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 162/338 (47%), Positives = 209/338 (61%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEG 177
M LVTGAAGF+G++ S L G V+G+DN N YYD +LK AR L+ F ++
Sbjct: 1 MKYLVTGAAGFIGANVSKRLCAMGHEVVGIDNLNDYYDVALKLARLAPLEALSNFHFIKL 60
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
DL D + KLF F V+HLAAQAGVRY++ NP +Y SN+ G + +LE C+ +
Sbjct: 61 DLADREGIAKLFAQQGFQRVIHLAAQAGVRYSLDNPLAYADSNLVGHLTILEGCRHHKIE 120
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
+V+ASSSSVYGLN ++PFS D P SLYAATKKA E ++HTY+H+Y L TGLRF
Sbjct: 121 -HLVYASSSSVYGLNQKMPFSTEDSVDHPISLYAATKKANELMSHTYSHLYQLPTTGLRF 179
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD--- 354
FTVYGPWGRPDMA F FTK IL G+TIDVY D ++RDFTYIDD+V+G + D
Sbjct: 180 FTVYGPWGRPDMALFKFTKAILAGETIDVYNHGD---LSRDFTYIDDIVEGIIRVQDKPP 236
Query: 355 --TAXXXXXXXXXXXXPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGD 412
T A RV+N+GN SPV + ++ LE L +AKK + M + GD
Sbjct: 237 SPTPDWRVETGTPANSSAPYRVFNIGNGSPVQLLDFITALERALGIEAKKQFLPM-QPGD 295
Query: 413 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
V T A+ +K GYK D+ G+ KFV WY ++Y
Sbjct: 296 VHATWADTEDLFKAVGYKSQVDIDTGVAKFVDWYRNFY 333
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LIS3 | GAE6_ARATH | 5, ., 1, ., 3, ., 6 | 0.7943 | 0.9390 | 0.9717 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 476 | |||
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 1e-169 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 2e-76 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 1e-67 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 1e-49 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 4e-47 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 1e-45 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 9e-43 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 3e-42 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 4e-37 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 2e-36 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 5e-33 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 9e-33 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 2e-29 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 4e-29 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 5e-29 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 1e-28 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 7e-28 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 1e-26 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 5e-26 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 7e-26 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 1e-25 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 3e-25 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 2e-23 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 2e-23 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 9e-23 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 2e-21 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 8e-18 | |
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 8e-18 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 1e-17 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 5e-17 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 1e-16 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 2e-16 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 4e-15 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 6e-15 | |
| cd05261 | 248 | cd05261, CAPF_like_SDR_e, capsular polysaccharide | 2e-14 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 8e-14 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 2e-13 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 9e-13 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 1e-12 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 2e-12 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 2e-12 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 3e-11 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 2e-10 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 1e-09 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 1e-09 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 1e-09 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 2e-09 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 3e-09 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 4e-09 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 2e-08 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 4e-08 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 5e-07 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 1e-06 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 2e-06 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 2e-06 | |
| COG1090 | 297 | COG1090, COG1090, Predicted nucleoside-diphosphate | 3e-06 | |
| PLN02572 | 442 | PLN02572, PLN02572, UDP-sulfoquinovose synthase | 3e-06 | |
| PLN02725 | 306 | PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5- | 4e-06 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 5e-06 | |
| PRK11908 | 347 | PRK11908, PRK11908, NAD-dependent epimerase/dehydr | 1e-05 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 2e-05 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 6e-05 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 6e-05 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 2e-04 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 3e-04 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 4e-04 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 8e-04 | |
| TIGR03589 | 324 | TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd | 0.001 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 0.001 | |
| PLN02896 | 353 | PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | 0.002 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 0.004 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 0.004 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 478 bits (1232), Expect = e-169
Identities = 183/337 (54%), Positives = 231/337 (68%), Gaps = 11/337 (3%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEG 177
M +LVTGAAGF+G H + L +RGD V+G+DN N YYD LK AR +LL K F V+G
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLERGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVKG 60
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
DL D L +LF F V+HLAAQAGVRY+++NP +YV SNI GF+NLLE+C+ +
Sbjct: 61 DLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFGVK 120
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
+V+ASSSSVYGLNT++PFSE R D P SLYAATKKA E +AHTY+H+YG+ TGLRF
Sbjct: 121 -HLVYASSSSVYGLNTKMPFSEDDRVDHPISLYAATKKANELMAHTYSHLYGIPTTGLRF 179
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357
FTVYGPWGRPDMA F FTK IL+GK IDV+ +D ++RDFTYIDD+V+G V ALDT
Sbjct: 180 FTVYGPWGRPDMALFLFTKAILEGKPIDVF---NDGNMSRDFTYIDDIVEGVVRALDTPA 236
Query: 358 KSTGSG-----GKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGD 412
K + A RVYN+GN SPV + + LE L KAKK+ + M + GD
Sbjct: 237 KPNPNWDAEAPDPSTSSAPYRVYNIGNNSPVKLMDFIEALEKALGKKAKKNYLPMQK-GD 295
Query: 413 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 449
VP T+A++S + GYKP T L G+++FV+WY
Sbjct: 296 VPETYADISKLQRLLGYKPKTSLEEGVKRFVEWYKEN 332
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 241 bits (617), Expect = 2e-76
Identities = 113/330 (34%), Positives = 163/330 (49%), Gaps = 31/330 (9%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTG AGF+GSH L +RG V+ LDN ++ +L + + +EGD+
Sbjct: 2 VLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEVKPNVK------FIEGDIR 55
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D L+ F+ V +V H AAQA V ++++P N+ G +NLLE + +
Sbjct: 56 DDELVEFAFEGV--DYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVK-RF 112
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
V+ASSSSVYG +P E H P S YA +K AGE + +YGL LR+F V
Sbjct: 113 VYASSSSVYGDPPYLPKDEDHPP-NPLSPYAVSKYAGELYCQVFARLYGLPTVSLRYFNV 171
Query: 301 YGPWGRPDMAYF----FFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356
YGP P+ Y F + L+G+ +Y D E RDFTY++DVV+ A A
Sbjct: 172 YGPRQDPNGGYAAVIPIFIERALKGEPPTIY---GDGEQTRDFTYVEDVVE----ANLLA 224
Query: 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYT 416
+ G VYN+G V L ++ +L + + V PR GDV ++
Sbjct: 225 ATAGAGGE---------VYNIGTGKRTSVNELAELIREILGKELEP-VYAPPRPGDVRHS 274
Query: 417 HANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
A++S A K G++P GLR V+W+
Sbjct: 275 LADISKAKKLLGWEPKVSFEEGLRLTVEWF 304
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 1e-67
Identities = 103/342 (30%), Positives = 155/342 (45%), Gaps = 36/342 (10%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +LVTG AGF+GSH L G V GLD DP L V D
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEF----------VVLD 50
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAM-QNPQSYVASNIAGFVNLLEVCKSVNPQ 237
L D L+ +L VP V+HLAAQ+ V + +P ++ N+ G +NLLE ++ +
Sbjct: 51 LTDRDLVDELAKGVP-DAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVK 109
Query: 238 PSIVWASSSSVYGLNTQV-PFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
V+ASS SV + P E +P + Y +K A E++ Y +YGL + LR
Sbjct: 110 R-FVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILR 168
Query: 297 FFTVYGPWGRPDMAYFF---FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353
F VYGP +PD++ F + +L+G+ I V D RDF Y+DDV + AL
Sbjct: 169 PFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIG--GDGSQTRDFVYVDDVADALLLAL 226
Query: 354 DTAGKSTGSGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNTKAKK-HVIRMPRNG 411
+ V+N+G+ T+ + V L + + +KA I + R G
Sbjct: 227 ENPD--------------GGVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRG 272
Query: 412 DV-PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452
D+ ++S A G++P L GL ++W + +
Sbjct: 273 DLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKLEL 314
|
Length = 314 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 167 bits (426), Expect = 1e-49
Identities = 77/260 (29%), Positives = 108/260 (41%), Gaps = 62/260 (23%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTG AGF+GSH L +RG V+ +D
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDRL----------------------------- 31
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
V+HLAA GV + NP +N+ G +NLLE + +
Sbjct: 32 --------------DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKR-F 76
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
V+ASS+SVYG +P E +P S Y +K A E + +Y YGL + LR V
Sbjct: 77 VYASSASVYGSPEGLPEEEETPP-RPLSPYGVSKLAAEHLLRSYGESYGLPVVILRLANV 135
Query: 301 YGPWGRP--DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358
YGP RP D F + L+GK + V+ RDF ++DDVV+ + AL+ +
Sbjct: 136 YGPGQRPRLDGVVNDFIRRALEGKPLTVF---GGGNQTRDFIHVDDVVRAILHALENPLE 192
Query: 359 STGSGGKKRGPAQLRVYNLG 378
VYN+G
Sbjct: 193 GG------------GVYNIG 200
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 162 bits (412), Expect = 4e-47
Identities = 86/261 (32%), Positives = 118/261 (45%), Gaps = 31/261 (11%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTG GF+GSH L + G V+ L +R R + L ++ EGDL
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVIVL----------GRRRRSESLNTGRIRFHEGDLT 50
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D L +L V V+HLAAQ+GV + ++P ++ +N+ G + LLE +
Sbjct: 51 DPDALERLLAEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGV-KRF 109
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
V+ASSS VYG P +E P S YAA K A E + Y YGL LR F V
Sbjct: 110 VFASSSEVYGDVADPPITEDTPLG-PLSPYAAAKLAAERLVEAYARAYGLRAVILRLFNV 168
Query: 301 YGPW---GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357
YGP + IL+GK I + D RDF Y+DDV + + AL+
Sbjct: 169 YGPGNPDPFVTHVIPALIRRILEGKPILLL---GDGTQRRDFLYVDDVARAILLALE--- 222
Query: 358 KSTGSGGKKRGPAQLRVYNLG 378
G +YN+G
Sbjct: 223 -------HPDGG---EIYNIG 233
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-45
Identities = 103/353 (29%), Positives = 151/353 (42%), Gaps = 57/353 (16%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEGD 178
VLVTG AG++GSH + L + G V+ LDN N + + +L R ++K ++ EGD
Sbjct: 1 KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGHRE-ALPR-----IEKIRIEFYEGD 54
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK--SVNP 236
+ D L K+F V+H AA V ++Q P Y +N+ G +NLLE + V
Sbjct: 55 IRDRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGVK- 113
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ V++SS++VYG VP +E P + Y TK E+I GL LR
Sbjct: 114 --NFVFSSSAAVYGEPETVPITEEAPL-NPTNPYGRTKLMVEQILRDLAKAPGLNYVILR 170
Query: 297 FFTVYG--PWGR------------PDMAYFFFTKDILQGKTI--DVYKTQDDREVARDFT 340
+F G P G P + + + I D Y T D V RD+
Sbjct: 171 YFNPAGAHPSGLIGEDPQIPNNLIPYVLQVALGR--REKLAIFGDDYPTPDGTCV-RDYI 227
Query: 341 YIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA 400
++ D+ V AL+ GS +YNLG GR S+LE ++
Sbjct: 228 HVVDLADAHVLALEKLENGGGS----------EIYNLGT------GRGYSVLE-VVEA-F 269
Query: 401 KK-------HVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
+K + I R GD A+ S A ++ G+KP DL W
Sbjct: 270 EKVSGKPIPYEIAPRRAGDPASLVADPSKAREELGWKPKRDLEDMCEDAWNWQ 322
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 153 bits (390), Expect = 9e-43
Identities = 97/353 (27%), Positives = 145/353 (41%), Gaps = 57/353 (16%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M VLVTG AG++GSH L K G V+ LDN L + L K Q EGD
Sbjct: 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDN--------LSNGHKIALLKLQFKFYEGD 52
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D LLT +F+ V+H AA V ++QNP Y +N+ G +NL+E +
Sbjct: 53 LLDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK- 111
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+++S+++VYG T P SE+ P + Y +K EEI + LR+F
Sbjct: 112 KFIFSSTAAVYGEPTTSPISETSPLA-PINPYGRSKLMSEEILRDAAKANPFKVVILRYF 170
Query: 299 TVYGPWGRPDMAYFF--FTKD-------ILQ---GKT--IDV----YKTQDDREVARDFT 340
V G + GK + + Y T+D + RD+
Sbjct: 171 NVAG----ACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCI-RDYI 225
Query: 341 YIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT-- 398
++DD+ V AL + ++NLG+ G S+LE ++
Sbjct: 226 HVDDLADAHVLALK----------YLKEGGSNNIFNLGS------GNGFSVLE-VIEAAK 268
Query: 399 KAKKH----VIRMPRNGDVPYTHANVSLAYKDFGYKPT-TDLAAGLRKFVKWY 446
K I R GD A+ S A + G++PT DL ++ W+
Sbjct: 269 KVTGRDIPVEIAPRRAGDPAILVADSSKARQILGWQPTYDDLEDIIKDAWDWH 321
|
Length = 329 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-42
Identities = 96/330 (29%), Positives = 145/330 (43%), Gaps = 37/330 (11%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VL+ G GF+GSH AL + G V D Y+ L V ++GD
Sbjct: 2 VLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYELPLGG----------VDYIKGDYE 51
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
+ L +V V+HLA+ + +NP + +N+A V LLE C + I
Sbjct: 52 NRADLESA--LVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKII 109
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300
+S +VYG+ Q+P SES T P S Y +K A E+ Y ++YGL T LR
Sbjct: 110 FASSGGTVYGVPEQLPISESDPTL-PISSYGISKLAIEKYLRLYQYLYGLDYTVLRISNP 168
Query: 301 YGPWGRPD-----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355
YGP RPD + IL+G+ I+++ D E RD+ YIDD+V+ + L +
Sbjct: 169 YGPGQRPDGKQGVIPIALNK--ILRGEPIEIW---GDGESIRDYIYIDDLVEALMALLRS 223
Query: 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPY 415
G V+N+G+ + L++ +E + + R DVP
Sbjct: 224 KGLE-------------EVFNIGSGIGYSLAELIAEIEKVTGRSVQVIY-TPARTTDVPK 269
Query: 416 THANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
++S A + G+ P L GL K +W
Sbjct: 270 IVLDISRARAELGWSPKISLEDGLEKTWQW 299
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 4e-37
Identities = 86/360 (23%), Positives = 137/360 (38%), Gaps = 55/360 (15%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEG 177
M VL+TG AGF+GS+ + K+G V+G DN A K ++ V G
Sbjct: 1 MRVLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGS-FGNLAWLKANREDGGVRFVHG 59
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L LF ++H AAQ V + +P+ +N G +N+LE + P
Sbjct: 60 DIRNRNDLEDLF--EDIDLIIHTAAQPSVTTSASSPRLDFETNALGTLNVLEAARQHAPN 117
Query: 238 PSIVWASSSSVYG--------------------LNTQVPFSESHRTDQPASLYAATKKAG 277
++ S++ VYG + SES D SLY A+K A
Sbjct: 118 APFIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESFPLDFSHSLYGASKGAA 177
Query: 278 EEIAHTYNHIYGLALTGLRFFTVYGPW--GRPDMAYF-FFTKDILQGKTIDVY---KTQD 331
++ Y I+GL R + GP G D + +F K + GK + ++ Q
Sbjct: 178 DQYVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQGWVAYFLKCAVTGKPLTIFGYGGKQ- 236
Query: 332 DREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSI 391
RD + D+V + + G V+N+G VS+
Sbjct: 237 ----VRDVLHSADLVNLYLRQFQNPDRRKG-----------EVFNIGGG----RENSVSL 277
Query: 392 LE--NLLNTKAKKHVIRMP---RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
LE L + + R GD + +++ + G+KP D L + W
Sbjct: 278 LELIALCEEITGRKMESYKDENRPGDQIWYISDIRKIKEKPGWKPERDPREILAEIYAWI 337
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 2e-36
Identities = 96/343 (27%), Positives = 148/343 (43%), Gaps = 46/343 (13%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH---QVFIVE 176
VLVTGA GF+GSH + L + G V LD +NS LL + +
Sbjct: 1 NVLVTGADGFIGSHLTERLLREGHEVRALDIYNS-------FNSWGLLDNAVHDRFHFIS 53
Query: 177 GDLNDAPL---LTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS 233
GD+ DA L K DV V HLAA + Y+ P SYV +N+ G +N+LE
Sbjct: 54 GDVRDASEVEYLVKKCDV-----VFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACV 108
Query: 234 VNPQPSIVWASSSSVYGLNTQVPFSESH---RTDQPASLYAATKKAGEEIAHTYNHIYGL 290
+ + +V S+S VYG VP E H ++P S Y+A+K+ + +A++Y +GL
Sbjct: 109 LYRKR-VVHTSTSEVYGTAQDVPIDEDHPLLYINKPRSPYSASKQGADRLAYSYGRSFGL 167
Query: 291 ALTGLRFFTVYGPWGRPDMAYFFFT--KDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348
+T +R F YGP R T G+ + D RDF ++ D +G
Sbjct: 168 PVTIIRPFNTYGP--RQSARAVIPTIISQRAIGQRLINL---GDGSPTRDFNFVKDTARG 222
Query: 349 CVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGR-----LVSILENLLNTKAKKH 403
+ LD A + N G+ + +G +V L ++ H
Sbjct: 223 FIDILDA------------IEAVGEIINNGSGEEISIGNPAVELIVEELGEMVLIVYDDH 270
Query: 404 VIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
P +V ++ A + G++P L GLR+ ++W+
Sbjct: 271 REYRPGYSEVERRIPDIRKAKRLLGWEPKYSLRDGLRETIEWF 313
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 5e-33
Identities = 89/336 (26%), Positives = 148/336 (44%), Gaps = 40/336 (11%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+TG AGF+GSH L + G V+ +DNF + KR + L+ + D
Sbjct: 1 KRILITGGAGFLGSHLCDRLLEDGHEVICVDNFFT----GRKRNIEHLIGHPNFEFIRHD 56
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ + PL + D + HLA A + NP + +N+ G +N+L + K V +
Sbjct: 57 VTE-PLYLE-VDQ-----IYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGAR- 108
Query: 239 SIVWASSSSVYGLNTQVPFSESHR----TDQPASLYAATKKAGEEIAHTYNHIYGLALTG 294
++ AS+S VYG P ES+ P S Y K+ E + Y+ +G+ +
Sbjct: 109 -VLLASTSEVYGDPEVHPQPESYWGNVNPIGPRSCYDEGKRVAETLCMAYHRQHGVDVRI 167
Query: 295 LRFFTVYGPWGRPDMAYFF--FTKDILQGKTIDVYK--TQDDREVARDFTYIDDVVKGCV 350
R F YGP P+ F L+G+ I VY TQ R F Y+ D+V+G +
Sbjct: 168 ARIFNTYGPRMHPNDGRVVSNFIVQALRGEPITVYGDGTQ-----TRSFQYVSDLVEGLI 222
Query: 351 GALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN 410
+++ GP NLGN + L +++ L +K++ V
Sbjct: 223 RLMNSDYFG--------GP-----VNLGNPEEFTILELAELVKKLTGSKSEI-VFLPLPE 268
Query: 411 GDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
D ++S A + G++P L GLR+ ++++
Sbjct: 269 DDPKRRRPDISKAKELLGWEPKVPLEEGLRRTIEYF 304
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 9e-33
Identities = 100/340 (29%), Positives = 146/340 (42%), Gaps = 50/340 (14%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTG AG++GSH L + G V+ LDN ++ +L R + V VEGDL
Sbjct: 2 ILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPR----GERITPVTFVEGDLR 57
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D LL +LF+ V+H A V ++Q P Y +N+ G +NLLE + +
Sbjct: 58 DRELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKK-F 116
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI-YGLALTGLRFFT 299
+++SS++VYG + +P SE P + Y +K E+I + LR+F
Sbjct: 117 IFSSSAAVYGEPSSIPISEDSPL-GPINPYGRSKLMSEQILRDLQKADPDWSYVILRYFN 175
Query: 300 VYG--PWGRPDMAYFFFT---KDILQ---GK----TI--DVYKTQDDREVARDFTYIDDV 345
V G P G T Q GK TI Y T D V RD+ ++ D+
Sbjct: 176 VAGAHPSGDIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCV-RDYIHVMDL 234
Query: 346 VKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI 405
+ AL+ GS VYNLG G+ S+LE + +A K V
Sbjct: 235 ADAHLAALEYLLNGGGS----------HVYNLGY------GQGFSVLEVI---EAFKKVS 275
Query: 406 RMP--------RNGDVPYTHANVSLAYKDFGYKPT-TDLA 436
R GD A+ S ++ G++P TDL
Sbjct: 276 GKDFPVELAPRRPGDPASLVADASKIRRELGWQPKYTDLE 315
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 2e-29
Identities = 83/329 (25%), Positives = 126/329 (38%), Gaps = 39/329 (11%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
L+TG G GS+ + L ++G V G+ +S + R + K ++ + GDL
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS--SFNTDRIDHLYINKDRITLHYGDL 58
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D+ L + + V + HLAAQ+ V+ + +P+ N G +NLLE + +
Sbjct: 59 TDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLDAR 118
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGL-ALTGLRFF 298
ASSS YG ++P SE+ +P S YA +K + I Y YGL A+ G R F
Sbjct: 119 FYQASSSEEYGKVQELPQSETT-PFRPRSPYAVSKLYADWITRNYREAYGLFAVNG-RLF 176
Query: 299 TVYGPWGRPDMAYFFFTKD-------ILQGKTIDVYKTQ--DDREVARDFTYIDDVVKGC 349
GP R + F T+ I G V K D + RD+ D V+
Sbjct: 177 NHEGP-RRGET---FVTRKITRQVARIKAGL-QPVLKLGNLDAK---RDWGDARDYVEAY 228
Query: 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP- 408
L G Y + V V + V P
Sbjct: 229 WLLL-----QQGEPD---------DYVIATGETHSVREFVELAFEESGLTGDIEVEIDPR 274
Query: 409 --RNGDVPYTHANVSLAYKDFGYKPTTDL 435
R +V + S A ++ G+KP
Sbjct: 275 YFRPTEVDLLLGDPSKAREELGWKPEVSF 303
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 4e-29
Identities = 92/335 (27%), Positives = 155/335 (46%), Gaps = 28/335 (8%)
Query: 119 MTVLVTGAAGFVGSH--CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
M +LVTG AGF+GS+ L K ++ LD Y +L+ + + V+
Sbjct: 1 MKILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLT--YAGNLENLE-DVSSSPRYRFVK 57
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ DA L+ +LF+ V+H AA++ V ++ +P+ ++ +N+ G LLE +
Sbjct: 58 GDICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRTNVLGTYTLLEAAR-KYG 116
Query: 237 QPSIVWASSSSVYG-LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
V S+ VYG L F+E+ P S Y+A+K A + + Y+ YGL +
Sbjct: 117 VKRFVHISTDEVYGDLLDDGEFTETSPLA-PTSPYSASKAAADLLVRAYHRTYGLPVVIT 175
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355
R YGP+ P+ F + L GK + +Y D V RD+ Y++D + A++
Sbjct: 176 RCSNNYGPYQFPEKLIPLFILNALDGKPLPIYG--DGLNV-RDWLYVEDHAR----AIEL 228
Query: 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK--KHVIRMPRNGDV 413
++G +YN+G + + LV ++ LL +V P + D
Sbjct: 229 V--------LEKGRV-GEIYNIGGGNELTNLELVKLILELLGKDESLITYVKDRPGH-DR 278
Query: 414 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 448
Y + S ++ G++P GLRK V+WY+
Sbjct: 279 RYA-IDSSKIRRELGWRPKVSFEEGLRKTVRWYLE 312
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 5e-29
Identities = 93/334 (27%), Positives = 158/334 (47%), Gaps = 22/334 (6%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH--QVFIVEGDL 179
L+TG AGF+GS L V+GLDNF++ Y +L R + ++ + ++GD+
Sbjct: 19 LITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDI 78
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
K V + VLH AA V ++++P + ++NI GF+N+L + + S
Sbjct: 79 RKFTDCQKACKNVDY--VLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-S 135
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
+A+SSS YG + +P E R +P S YA TK E A + Y GLR+F
Sbjct: 136 FTYAASSSTYGDHPDLPKIE-ERIGRPLSPYAVTKYVNELYADVFARSYEFNAIGLRYFN 194
Query: 300 VYGPWGRPDMAY-FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358
V+G P+ AY + IL + D +RDF YI++V++ + + T
Sbjct: 195 VFGRRQNPNGAYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATTNDL 254
Query: 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP-----RNGDV 413
++ + +VYN+ + L ++ + LN + P R+GDV
Sbjct: 255 ASKN----------KVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDV 304
Query: 414 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYV 447
++ A+++ Y+P D+ GL++ +KWY+
Sbjct: 305 KHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYI 338
|
Length = 348 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-28
Identities = 91/343 (26%), Positives = 145/343 (42%), Gaps = 38/343 (11%)
Query: 119 MTVLVTGAAGFVGSH-CSLALKKRGD-GVLGLD--NFNSYYDPSLKRARQKLLQKHQVFI 174
M +LVTG AGF+GS+ L K D V+ LD + + +L + +
Sbjct: 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLE-NLA----DVEDSPRYRF 55
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
V+GD+ D L+ +LF V+H AA++ V ++ P ++ +N+ G LLE +
Sbjct: 56 VQGDICDRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKY 115
Query: 235 NPQPSIVWASSSSVYG--LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
+ S+ VYG F+E+ + P+S Y+A+K A + + Y YGL
Sbjct: 116 WGKFRFHHISTDEVYGDLGLDDDAFTETTPYN-PSSPYSASKAASDLLVRAYVRTYGLPA 174
Query: 293 TGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352
T R YGP+ P+ + L GK + VY D ++ RD+ Y++D + A
Sbjct: 175 TITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYG--DGLQI-RDWLYVEDHCR----A 227
Query: 353 LDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK------KHVIR 406
+D G YN+G + +V + LL V
Sbjct: 228 IDLVLTKGKIG---------ETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFV-- 276
Query: 407 MPRNG-DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 448
R G D Y + S ++ G++P GLRK V WY+
Sbjct: 277 EDRPGHDRRYA-IDASKIKRELGWRPQETFETGLRKTVDWYLD 318
|
Length = 340 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 7e-28
Identities = 88/326 (26%), Positives = 145/326 (44%), Gaps = 41/326 (12%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS-----YYDPSLKRARQKLLQKHQVFIV 175
VLVTGA GF+GSH AL ++G V +NS + D S + K + +V
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEVKDK------IEVV 54
Query: 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
GD+ D + K V HLAA + Y+ P SYV +N+ G +N+L+ + +
Sbjct: 55 TGDIRDPDSVRKAMKGC--DVVFHLAALIAIPYSYIAPDSYVDTNVTGTLNVLQAARDLG 112
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
+ +V S+S VYG VP E H Q S Y+A+K +++A ++ + +T +
Sbjct: 113 VE-KVVHTSTSEVYGTAQYVPIDEKHPL-QGQSPYSASKIGADQLALSFYRSFNTPVTII 170
Query: 296 RFFTVYGPWGRPDMAYFFFT--KDILQGK-TIDVYKTQDDREVARDFTYIDDVVKGCVGA 352
R F YGP R T I GK I + RDF Y+ D V+G + A
Sbjct: 171 RPFNTYGP--RQSARAVIPTIITQIASGKRRIKLGSLSP----TRDFNYVTDTVRGFI-A 223
Query: 353 LDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK----KHVIRMP 408
+ + K+ G V N+G+ + +G V ++ ++ ++ + + +R P
Sbjct: 224 IAESDKTVG-----------EVINIGSNFEISIGDTVKLIAEIMGSEVEIETDEERLR-P 271
Query: 409 RNGDVPYTHANVSLAYKDFGYKPTTD 434
+V + S + G++P
Sbjct: 272 EKSEVERLWCDNSKIKELTGWQPKYS 297
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 1e-26
Identities = 92/327 (28%), Positives = 142/327 (43%), Gaps = 29/327 (8%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTG AGF+GSH L + G+ V+ +DN +S + + K F+ L+
Sbjct: 2 ILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSS---GRRENIEPEFENKAFRFVKRDLLD 58
Query: 181 DAPLLTKL-FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
A + K D V HLAA VR +P + N+ N+LE ++ +
Sbjct: 59 TADKVAKKDGDT-----VFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVK-R 112
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
IV+ASSS+VYG +P E P S+Y A+K A E + Y H++G RF
Sbjct: 113 IVFASSSTVYGEAKVIPTPE-DYPPLPISVYGASKLAAEALISAYAHLFGFQAWIFRFAN 171
Query: 300 VYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKS 359
+ GP + Y F K ++V D + + Y+ D CV A+ A +
Sbjct: 172 IVGPRSTHGVIYDFINKLKRNPNELEVL---GDGRQRKSYLYVSD----CVDAMLLAWEK 224
Query: 360 TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN--GDVPYTH 417
+ G + ++NLGN + V + I+ L K + R GDVPY
Sbjct: 225 STEG--------VNIFNLGNDDTISVNEIAEIVIEELGLKPRFKYSGGDRGWKGDVPYMR 276
Query: 418 ANVSLAYKDFGYKPTTDLAAGLRKFVK 444
++ K G+KP + +RK V+
Sbjct: 277 LDIEKL-KALGWKPRYNSEEAVRKTVR 302
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 5e-26
Identities = 83/349 (23%), Positives = 139/349 (39%), Gaps = 56/349 (16%)
Query: 121 VLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
++VTG AGF+GS+ AL +RG +L +DN + L + +
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRD-------GHKFLNLADLV---IADYI 50
Query: 180 NDAPLLTKL--FDVVPFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK 232
+ L +L + H A + Y M+N N LL+ C
Sbjct: 51 DKEDFLDRLEKGAFGKIEAIFHQGACSDTTETDGEYMMEN-------NYQYSKRLLDWC- 102
Query: 233 SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA- 291
++ASS++ YG + + F E ++P ++Y +K ++ L+
Sbjct: 103 -AEKGIPFIYASSAATYG-DGEAGFREGRELERPLNVYGYSKFLFDQYVRRRVLPEALSA 160
Query: 292 -LTGLRFFTVYGPW----GR-PDMAYFFFTKDILQGKTIDVYKTQD---DREVARDFTYI 342
+ GLR+F VYGP G+ +A+ F + I G + ++K+ + D E RDF Y+
Sbjct: 161 QVVGLRYFNVYGPREYHKGKMASVAFHLFNQ-IKAGGNVKLFKSSEGFKDGEQLRDFVYV 219
Query: 343 DDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK 402
DVV + L+ SG ++NLG L + L K
Sbjct: 220 KDVVDVNLWLLENG----VSG----------IFNLGTGRARSFNDLADAVFKALGKDEKI 265
Query: 403 HVIRMPRNGDVPY---THANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 448
I MP Y T A+++ Y P T L G++ +V+W ++
Sbjct: 266 EYIPMPEALRGRYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLLA 314
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 91/345 (26%), Positives = 127/345 (36%), Gaps = 52/345 (15%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
LVTGA GF+GSH + LK G V G D + + + DL
Sbjct: 2 RALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDE---------FHLVDL 52
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQ-AGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ K + V HV HLAA G+ Y N + +N N+LE + +N
Sbjct: 53 REMENCLKATEGV--DHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAAR-INGVE 109
Query: 239 SIVWASSSSVYGLNTQ-----VPFSESHRT-DQPASLYAATKKAGEEIAHTYNHIYGLAL 292
++ASS+ VY Q V E +P Y K A E + YN YG+
Sbjct: 110 RFLFASSACVYPEFKQLETTVVRLREEDAWPAEPQDAYGWEKLATERLCQHYNEDYGIET 169
Query: 293 TGLRFFTVYGPW-----GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347
+RF +YGP GR K K D ++ D R FTYIDD
Sbjct: 170 RIVRFHNIYGPRGTWDGGREKAPAAMCRKVAT-AKDGDRFEIWGDGLQTRSFTYIDD--- 225
Query: 348 GCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM 407
CV L +S P NLG+ +VS+ E L +
Sbjct: 226 -CVEGLRRLMES-----DFGEPV-----NLGS------DEMVSMNE-LAEMVLSFSGKPL 267
Query: 408 PRNGDVP------YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
P +++ +L ++ G++P T L GLR W
Sbjct: 268 EIIHHTPGPQGVRGRNSDNTLLKEELGWEPNTPLEEGLRITYFWI 312
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 106 bits (265), Expect = 1e-25
Identities = 89/337 (26%), Positives = 142/337 (42%), Gaps = 45/337 (13%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ-VFIVEG 177
M VL+TG AG +GSH L +RG V+ +DNF + R++ L H + +VEG
Sbjct: 1 MKVLITGGAGQIGSHLIEHLLERGHQVVVIDNFAT--------GRREHLPDHPNLTVVEG 52
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYV---ASNIAGFVNLLEVCKSV 234
+ D L+ KLF V+H AA A ++P + +N+ G N+++ K
Sbjct: 53 SIADKALVDKLFGDFKPDAVVHTAA------AYKDPDDWYEDTLTNVVGGANVVQAAKKA 106
Query: 235 NPQPSIVWASSSSVYGLN-TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALT 293
+ +++ ++ YGL Q P H P S YA +K AGE Y + G+
Sbjct: 107 GVK-RLIYFQTALCYGLKPMQQPIRLDHPRAPPGSSYAISKTAGEY----YLELSGVDFV 161
Query: 294 GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353
R V GP F+ + + GK V T+ RDF ++ D+ + AL
Sbjct: 162 TFRLANVTGPRNVIGPLPTFY-QRLKAGKKCFVTDTR------RDFVFVKDLARVVDKAL 214
Query: 354 DTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSI-LENLLNTKAKKHVIRMPRNGD 412
D G + G Y+ + V + L +E L + + D
Sbjct: 215 D--------GIRGHG-----AYHFSSGEDVSIKELFDAVVEALDLPLRPEVEVVELGPDD 261
Query: 413 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 449
VP + S ++DFG+K T L+ + + WY +
Sbjct: 262 VPSILLDPSRTFQDFGWKEFTPLSETVSAALAWYDKH 298
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 103/362 (28%), Positives = 154/362 (42%), Gaps = 67/362 (18%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ---VFIVE 176
T+LVTG AG++GSH L L G V+ +DN ++ + +L+R + +L VF +
Sbjct: 7 TILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVK-ELAGDLGDNLVFH-K 64
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV-----C 231
DL D L K+F F V+H A V ++ P Y +N+ G +NLLEV C
Sbjct: 65 VDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGC 124
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---Y 288
K +V++SS++VYG +VP +E + Y TK EEI + +
Sbjct: 125 K------KLVFSSSATVYGQPEEVPCTEEFPL-SATNPYGRTKLFIEEICRDIHASDPEW 177
Query: 289 GLALTGLRFFTVYG----------PWGRPD--MAYFFFTKDILQ---GK----TI--DVY 327
+ L LR+F G P G P+ M Y + Q G+ T+ + Y
Sbjct: 178 KIIL--LRYFNPVGAHPSGRIGEDPKGIPNNLMPY------VQQVAVGRRPELTVFGNDY 229
Query: 328 KTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGR 387
T+D V RD+ ++ D+ G + AL G YNLG V
Sbjct: 230 PTKDGTGV-RDYIHVMDLADGHIAALRKLFTDPDIG--------CEAYNLGTGKGTSVLE 280
Query: 388 LVSILENLLNTKA--KK--HVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFV 443
+V+ E KA KK + R GD +A+ A K+ G+K + R
Sbjct: 281 MVAAFE-----KASGKKIPLKLAPRRPGDAEEVYASTEKAEKELGWKAKYGIDEMCRDQW 335
Query: 444 KW 445
W
Sbjct: 336 NW 337
|
Length = 352 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 95/345 (27%), Positives = 152/345 (44%), Gaps = 55/345 (15%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS S+ ++L KH F VEG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNS--KRSVLPVIERLGGKHPTF-VEG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + LLT++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTG 294
+++++SS++VYG ++P+ ES T P S Y +K E+I + +AL
Sbjct: 118 -NLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIAL-- 174
Query: 295 LRFFTVYG----------PWGRPD--MAYF------------FFTKDILQGKTIDVYKTQ 330
LR+F G P G P+ M Y F D Y T+
Sbjct: 175 LRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGND---------YPTE 225
Query: 331 DDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVS 390
D V RD+ ++ D+ G V A++ + +YNLG V +V+
Sbjct: 226 DGTGV-RDYIHVMDLADGHVAAMEK----------LANKPGVHIYNLGAGVGSSVLDVVN 274
Query: 391 ILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDL 435
K + R GD+P A+ S A ++ ++ T L
Sbjct: 275 AFSKACG-KPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTL 318
|
Length = 338 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 99.8 bits (249), Expect = 2e-23
Identities = 90/332 (27%), Positives = 145/332 (43%), Gaps = 27/332 (8%)
Query: 120 TVLVTGAAGFVGSH-CSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
+LVTG AGF+GS+ L + D V+ LD +Y L + V+G
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKL-TY--AGNLENLADLEDNPRYRFVKG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D L+++LF V+H AA++ V ++ P +++ +N+ G LLE + +
Sbjct: 58 DIGDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHE 117
Query: 238 PSIVWASSSSVYG-LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
S+ VYG L F+E+ P+S Y+A+K A + + Y+ YGL R
Sbjct: 118 FRFHHISTDEVYGDLEKGDAFTETTPL-APSSPYSASKAASDHLVRAYHRTYGLPALITR 176
Query: 297 FFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356
YGP+ P+ + L GK + VY D ++V RD+ Y++D + L+
Sbjct: 177 CSNNYGPYQFPEKLIPLMITNALAGKPLPVYG--DGQQV-RDWLYVEDHCRAIYLVLEKG 233
Query: 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK--KHVIRMPRNGDVP 414
+ G YN+G + +V + LL HV P + D
Sbjct: 234 ---------RVG----ETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGH-DRR 279
Query: 415 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
Y + S ++ G+ P GLRK V+WY
Sbjct: 280 YA-IDASKIKRELGWAPKYTFEEGLRKTVQWY 310
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 9e-23
Identities = 90/351 (25%), Positives = 144/351 (41%), Gaps = 60/351 (17%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKL---LQKHQVF-- 173
++VTG AGF+GS+ AL +RG +L +DN ++ + K+ + K
Sbjct: 1 MIIVTGGAGFIGSNLVKALNERGITDILVVDNLSN-GEKFKNLVGLKIADYIDKDDFKDW 59
Query: 174 IVEGDLNDAPLLTKLFDVVPFTHVLHLAA-----QAGVRYAMQNPQSYVASNIAGFVNLL 228
+ +GD N + + H A + +Y M N N LL
Sbjct: 60 VRKGDENF------KIEA-----IFHQGACSDTTETDGKYMMDN-------NYQYTKELL 101
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ--PASLYAATKKAGEEIAHTYNH 286
C + ++ASS++VYG N + F+E T P ++Y +K ++ A +
Sbjct: 102 HYCLEKKIR--FIYASSAAVYG-NGSLGFAEDIETPNLRPLNVYGYSKLLFDQWARRHGK 158
Query: 287 IYGLALTGLRFFTVYGP--WGRPDMA--YFFFTKDILQGKTIDVYKTQD---DREVARDF 339
+ GLR+F VYGP + + MA F I G+ + ++K+ D D E RDF
Sbjct: 159 EVLSQVVGLRYFNVYGPREYHKGRMASVVFHLFNQIKAGEKVKLFKSSDGYADGEQLRDF 218
Query: 340 TYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTK 399
Y+ DVVK + L+ G ++N+G L S L +
Sbjct: 219 VYVKDVVKVNLFFLEN--------PSVSG-----IFNVGTGRARSFNDLASATFKALGKE 265
Query: 400 AKKHVIRMP---RNGDVPYTHANVSLAYKDFGY-KPTTDLAAGLRKFVKWY 446
K I P R +T A++S + GY K L G++ +VK Y
Sbjct: 266 VKIEYIDFPEDLRGKYQSFTEADIS-KLRAAGYTKEFHSLEEGVKDYVKNY 315
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 2e-21
Identities = 79/358 (22%), Positives = 126/358 (35%), Gaps = 52/358 (14%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLG--LDNFNSYYDPSLKRARQKLLQKHQVFI 174
G VLVTG GF GS SL L++ G V+G LD + P+L L
Sbjct: 3 QGKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTN---PNLFEL--ANLDNKISST 57
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
GD+ D L + V HLAAQ VR + ++P +N+ G VNLLE +
Sbjct: 58 R-GDIRDLNALREAIREYEPEIVFHLAAQPLVRLSYKDPVETFETNVMGTVNLLEAIRET 116
Query: 235 NPQPSIVWASSSSVYGLNTQV-PFSESHRTDQPASLYAATKKAGEEIAHTYNHIY----- 288
++V +S Y + E+ Y+++K E I +Y + +
Sbjct: 117 GSVKAVVNVTSDKCYENKEWGWGYREND-PLGGHDPYSSSKGCAELIISSYRNSFFNPEN 175
Query: 289 ----GLALTGLRFFTVYG----PWGR--PDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338
G+A+ R V G R PD + G+ + + R
Sbjct: 176 YGKHGIAIASARAGNVIGGGDWAEDRIVPDC-----IRAFEAGERVIIRNPN----AIRP 226
Query: 339 FTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSP--VPVGRLVSILENLL 396
+ ++ + + + G++ A +N G V V LV +
Sbjct: 227 WQHVLE----PLSGYLLLAEKLYERGEEYAEA----WNFGPDDEDAVTVLELVEAMARYW 278
Query: 397 NTKAKKHVIRMPRNGDVPY--THANV--SLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
A+ P+ + S A G++P +L L V WY +
Sbjct: 279 GEDARWD----LDGNSHPHEANLLKLDCSKAKTMLGWRPRWNLEETLEFTVAWYKEWL 332
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 8e-18
Identities = 60/238 (25%), Positives = 102/238 (42%), Gaps = 16/238 (6%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH-QVFIVEGD 178
L+TG G GS+ + L ++G V G+ +S ++ + ++ + GD
Sbjct: 4 VALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGD 63
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D+ L ++ + V + +LAAQ+ V + + P+ + G + LLE + + +
Sbjct: 64 LTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKK 123
Query: 239 S-IVWASSSSVYGLNTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYNHIYGL-ALTGL 295
+ AS+S +YGL ++P E+ T P S YA K I Y YGL A G
Sbjct: 124 TRFYQASTSELYGLVQEIPQKET--TPFYPRSPYAVAKLYAYWITVNYRESYGLFACNG- 180
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD-----DREVARDFTYIDDVVKG 348
F P R + F T+ I + QD + + RD+ + D V+
Sbjct: 181 ILFNHESP-LRGET---FVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEA 234
|
Length = 345 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 85.1 bits (210), Expect = 8e-18
Identities = 110/453 (24%), Positives = 184/453 (40%), Gaps = 67/453 (14%)
Query: 3 SPPDTSKTIKLERYNSYLRRLHVTKMLHSSSKLFFRATILIALVLILFFTLNHPPLSDNT 62
S P + KT+K R S R ++ L +L F IL+ +++ F + P LS
Sbjct: 23 SSPYSPKTLKHPR--SLPRSIN---YLFKEQRLLF---ILVGILIGSTFFILQPSLS--- 71
Query: 63 GESGDNNSNNKNNPRNLFTHQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPNG---- 118
+ P + S S + + + T R P G
Sbjct: 72 ----------RLGPAE--STSLITRSVSIAVTDSPPSSSTFNSSGGGGRTGRVPVGIGRK 119
Query: 119 -MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
+ ++VTG AGFVGSH L RGD V+ +DNF + K L + ++
Sbjct: 120 RLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFT----GRKENLVHLFGNPRFELIRH 175
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + P+L ++ + HLA A + NP + +N+ G +N+L + K V +
Sbjct: 176 DVVE-PILLEV------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAR 228
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTD-QPA---SLYAATKKAGEEIAHTYNHIYGLALT 293
+ S+S VYG + P E++ + P S Y K+ E +A Y+ G+ +
Sbjct: 229 --FLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAETLAMDYHRGAGVEVR 286
Query: 294 GLRFFTVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351
R F YGP D F ++ + + VY D + R F Y+ D+V G V
Sbjct: 287 IARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVY---GDGKQTRSFQYVSDLVDGLVA 343
Query: 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 411
++ G+ GP +NLGN + L +++ +++ A + P
Sbjct: 344 LME---------GEHVGP-----FNLGNPGEFTMLELAEVVKETIDSSAT--IEFKPNTA 387
Query: 412 DVPYTHA-NVSLAYKDFGYKPTTDLAAGLRKFV 443
D P+ ++S A + ++P L GL V
Sbjct: 388 DDPHKRKPDISKAKELLNWEPKISLREGLPLMV 420
|
Length = 436 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 84.6 bits (209), Expect = 1e-17
Identities = 95/370 (25%), Positives = 160/370 (43%), Gaps = 66/370 (17%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF---------NSYYDPSLKRARQKLLQ 168
G+ V+VTG AGFVGSH L RGD V+ +DNF + + +P+ + R +++
Sbjct: 119 GLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVE 178
Query: 169 KHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLL 228
P+L ++ + HLA A + NP + +N+ G +N+L
Sbjct: 179 --------------PILLEV------DQIYHLACPASPVHYKFNPVKTIKTNVVGTLNML 218
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD-QPA---SLYAATKKAGEEIAHTY 284
+ K V + + S+S VYG Q P E++ + P S Y K+ E + Y
Sbjct: 219 GLAKRVGAR--FLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAETLTMDY 276
Query: 285 NHIYGLALTGLRFFTVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYI 342
+ + + R F YGP D F L+ + + VY D + R F ++
Sbjct: 277 HRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY---GDGKQTRSFQFV 333
Query: 343 DDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK 402
D+V+G + ++ G+ GP +NLGN + L +++ ++ AK
Sbjct: 334 SDLVEGLMRLME---------GEHVGP-----FNLGNPGEFTMLELAKVVQETIDPNAK- 378
Query: 403 HVIRMPRNGDVPYTHA-NVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRV---KK 458
+ P D P+ +++ A + G++P L GL VK + + RV +K
Sbjct: 379 -IEFRPNTEDDPHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDF------RQRVFGDQK 431
Query: 459 ENGFSTTTST 468
E +T TST
Sbjct: 432 EGSSTTATST 441
|
Length = 442 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 5e-17
Identities = 95/343 (27%), Positives = 139/343 (40%), Gaps = 45/343 (13%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+TGAAGF+ SH + L + ++ LD + Y +LK + F V+GD
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLD--YCSNLKNLNPSKSSPNFKF-VKGD 65
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ A L+ L ++H AAQ V + N + +NI G LLE CK
Sbjct: 66 IASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIR 125
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQ--PASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ S+ VYG + +H Q P + Y+ATK E + Y YGL + R
Sbjct: 126 RFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTR 185
Query: 297 FFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV--------KG 348
VYGP P+ F +QGK + ++ D R + Y +DV KG
Sbjct: 186 GNNVYGPNQFPEKLIPKFILLAMQGKPLPIH---GDGSNVRSYLYCEDVAEAFEVVLHKG 242
Query: 349 CVGALDTAGKSTGSGGKKRGPAQLRVYNLGNT---SPVPVGRLVSILENLLNTKAKKHVI 405
VG VYN+G + V + + L L K+ K V
Sbjct: 243 EVG---------------------HVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVE 281
Query: 406 RMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 448
P N D Y + L K G++ T GL+K ++WY S
Sbjct: 282 NRPFN-DQRYFLDDQKL--KKLGWQERTSWEEGLKKTMEWYTS 321
|
Length = 668 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 81/356 (22%), Positives = 124/356 (34%), Gaps = 86/356 (24%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+LVTG G VGS L +RG + + R ++L DL
Sbjct: 1 KILVTGHRGLVGSAIVRVLARRGYENV------------VFRTSKEL-----------DL 37
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYA-MQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
D + F+ +V+HLAA+ G A M P ++ N+ N++ +
Sbjct: 38 TDQEAVRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVK- 96
Query: 239 SIVWASSSSVYGLNTQVPFSES-------HRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
+V+ SS +Y P ES T++ YA K+AG ++ Y YG
Sbjct: 97 KLVFLGSSCIYPDLAPQPIDESDLLTGPPEPTNEG---YAIAKRAGLKLCEAYRKQYGCD 153
Query: 292 LTGLRFFTVYGPWGR---------PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342
+ +YGP P + F + GK + V+ R+F Y
Sbjct: 154 YISVMPTNLYGPHDNFDPENSHVIPALIRKFHEAKLRGGKEVTVW---GSGTPRREFLYS 210
Query: 343 DDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK- 401
DD+ + V L Y+ V G +SI E L A+
Sbjct: 211 DDLARAIVFL-------------------LENYDEPIIVNVGSGVEISIRE-LAEAIAEV 250
Query: 402 ---KHVIR--------MPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
K I PR +VS + G+ P T L G+R+ +WY
Sbjct: 251 VGFKGEIVFDTSKPDGQPRKL------LDVSKL-RALGWFPFTPLEQGIRETYEWY 299
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 80.6 bits (199), Expect = 2e-16
Identities = 90/355 (25%), Positives = 145/355 (40%), Gaps = 50/355 (14%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
+ + +TGA GF+ SH + LK G ++ D K+ +F E
Sbjct: 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD---------WKKNEH---MSEDMFCHE 67
Query: 177 GDLNDAPLLTKLFDVVP-FTHVLHLAAQAGVRYAMQNPQSYVA-SNIAGFVNLLEVCKSV 234
L D ++ V HV +LAA G +Q+ S + +N N+LE + +
Sbjct: 68 FHLVDLRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAAR-I 126
Query: 235 NPQPSIVWASSSSVYG----LNTQVPFSESHR-TDQPASLYAATKKAGEEIAHTYNHIYG 289
N +ASS+ +Y L T V ES +P Y K A EE+ Y +G
Sbjct: 127 NGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFG 186
Query: 290 LALTGLRFFTVYGP---W--GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344
+ RF +YGP W GR F K + +++ D + R FT+ID+
Sbjct: 187 IECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMW---GDGKQTRSFTFIDE 243
Query: 345 VVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV 404
V+G + + T S R P N+G+ V + + I + N K
Sbjct: 244 CVEGVL-------RLTKS--DFREPV-----NIGSDEMVSMNEMAEIALSFENKKLPIKH 289
Query: 405 IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKE 459
I P V +++ +L + G+ PT L GLR ++Y+ I+ +++KE
Sbjct: 290 IPGPEG--VRGRNSDNTLIKEKLGWAPTMRLKDGLR------ITYFWIKEQIEKE 336
|
Length = 370 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 4e-15
Identities = 61/204 (29%), Positives = 82/204 (40%), Gaps = 17/204 (8%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
M VL+TGA+GFVG + L + ++ +D + R Q +
Sbjct: 1 MKVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPSGAPRVTQ----------IA 50
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GDL L+ L + P V HLAA A + N+ G NLLE + P
Sbjct: 51 GDLAVPALIEALANGRPDV-VFHLAAIVS-GGAEADFDLGYRVNVDGTRNLLEALRKNGP 108
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE-IAHTYNHIYGLALTGL 295
+P V+ SS +VYGL P H PAS Y A K E + + T L
Sbjct: 109 KPRFVFTSSLAVYGLPLPNP-VTDHTALDPASSYGAQKAMCELLLNDYSRRGFVDGRT-L 166
Query: 296 RFFTVYGPWGRPDMAYFFFTKDIL 319
R TV GRP+ A F I+
Sbjct: 167 RLPTVCVRPGRPNKAASAFASTII 190
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 6e-15
Identities = 74/361 (20%), Positives = 119/361 (32%), Gaps = 64/361 (17%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---YDPSLKRARQKLLQKHQVFIVE 176
+VLVTG +GF G L L+ +Y +D + Q + ++
Sbjct: 1 SVLVTGGSGFFGERLVKQL---------LERGGTYVRSFDIAPPGEALSAWQHPNIEFLK 51
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ D + + V H AA Y N+ G N+L+ C+
Sbjct: 52 GDITDRNDVEQALSGA--DCVFHTAAIVP---LAGPRDLYWEVNVGGTQNVLDACQRCGV 106
Query: 237 QPSIVWASSSSVYGLNTQVPFSESH---RTDQPASLYAATKKAGEEIAHTYNHIYGLALT 293
Q V+ SSSSV Q + + +YA TK E I N L
Sbjct: 107 Q-KFVYTSSSSVIF-GGQNIHNGDETLPYPPLDSDMYAETKAIAEIIVLEANGRDDLLTC 164
Query: 294 GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353
LR ++GP G + F + +G V+ DFTY+ ++ +
Sbjct: 165 ALRPAGIFGP-GDQGLVPILF-EWAEKGLVKFVF---GRGNNLVDFTYVHNLAHAHI--- 216
Query: 354 DTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR---- 409
A + G G Y + + P + L+ + L ++ IR+
Sbjct: 217 -LAAAALVKGKTISGQT----YFITDAEPHNMFELLRPVWKALGFGSR-PKIRLSGPLAY 270
Query: 410 ----------------NGDVPYTHA--------NVSLAYKDFGYKPTTDLAAGLRKFVKW 445
P+ +++ A KD GY P GL + + W
Sbjct: 271 CAALLSELVSFMLGPYFVFSPFYVRALVTPMYFSIAKAQKDLGYAPRYSNEEGLIETLNW 330
Query: 446 Y 446
Y
Sbjct: 331 Y 331
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 64/278 (23%), Positives = 99/278 (35%), Gaps = 68/278 (24%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +L+TGA GF+G + LK++ D +F + +
Sbjct: 1 MKILITGAKGFIGKNLIARLKEQKD--------------------------DDIFFYDRE 34
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVN-LLEVCKSVNPQ 237
+D L F + HLA GV ++ + + N+ G LL+ +
Sbjct: 35 -SDESELDDFLQGADF--IFHLA---GVNRP-KDEAEFESGNV-GLTERLLDALTRNGKK 86
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
P I+ +SS Q D P Y +K A EE+ Y G + R
Sbjct: 87 PPILLSSS-------IQAAL------DNP---YGKSKLAAEELLQEYARETGAPVYIYRL 130
Query: 298 FTVYGPWGRPDM--AYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355
V+G W RP+ A F +I + I + +D YIDDVV + L+
Sbjct: 131 PNVFGKWCRPNYNSAVATFCYNIARDLPIQI----NDPAAELTLVYIDDVVDELIQLLEG 186
Query: 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILE 393
A +G G + P V VG + +L
Sbjct: 187 APTYSG-GFDQVLP----------VYKVTVGEIAELLY 213
|
This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 8e-14
Identities = 58/241 (24%), Positives = 85/241 (35%), Gaps = 33/241 (13%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQK--LLQKHQVFIVEGD 178
+LVTGA GF+GS+ AL +G V L R+ LL V +VEGD
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRA-----------LVRSGSDAVLLDGLPVEVVEGD 49
Query: 179 LNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
L DA L D V HLAA ++ + +N+ G N+L+
Sbjct: 50 LTDAASLAAAMKGCDR-----VFHLAAF--TSLWAKDRKELYRTNVEGTRNVLDAALEAG 102
Query: 236 PQPSIVWASSSSVYGLNTQVPFSE--SHRTDQPASLYAATKKAGEEIAHTYNHIYGLALT 293
+ +V SS + G E + Y +K E GL +
Sbjct: 103 VR-RVVHTSSIAALGGPPDGRIDETTPWNERPFPNDYYRSKLLAELEVLEAAA-EGLDVV 160
Query: 294 GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353
+ V+GP + D L GK F + DV +G + A+
Sbjct: 161 IVNPSAVFGPGDEGPTSTGLDVLDYLNGKLPAYPPG------GTSFVDVRDVAEGHIAAM 214
Query: 354 D 354
+
Sbjct: 215 E 215
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 2e-13
Identities = 84/350 (24%), Positives = 151/350 (43%), Gaps = 40/350 (11%)
Query: 120 TVLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG- 177
+L+TG AGF+GS + + D V+ +D +Y + A + + + F E
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKL-TYAGNLMSLAP---VAQSERFAFEKV 58
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D L ++F V+HLAA++ V ++ P +++ +NI G LLE ++
Sbjct: 59 DICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNA 118
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQ---------PASLYAATKKAGEEIAHTYNHIY 288
+ S+ + ++T + + H TD P+S Y+A+K + + + + Y
Sbjct: 119 LTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY 178
Query: 289 GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348
GL YGP+ P+ + L GK + VY + + RD+ Y++D +
Sbjct: 179 GLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVY---GNGQQIRDWLYVEDHARA 235
Query: 349 --CVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK----- 401
CV G++ GG L V V + +LE L K +
Sbjct: 236 LYCVATTGKVGETYNIGGHNE-RKNLDV----------VETICELLEELAPNKPQGVAHY 284
Query: 402 KHVIRM--PRNG-DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 448
+ +I R G D+ Y + S ++ G+ P +G+RK V+WY++
Sbjct: 285 RDLITFVADRPGHDLRYA-IDASKIARELGWLPQETFESGMRKTVQWYLA 333
|
Length = 355 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 9e-13
Identities = 53/199 (26%), Positives = 79/199 (39%), Gaps = 23/199 (11%)
Query: 121 VLVTGAAGFVGSHCSLALKK--RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+LVTGAAG +G + L R GV GLD R+ +V V D
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPRVIGVDGLD------------RRRPPGSPPKVEYVRLD 48
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ D P +F V+HLA + ++ N+ G N+L+ C + P
Sbjct: 49 IRD-PAAADVFREREADAVVHLAF---ILDPPRDGAERHRINVDGTQNVLDACAAA-GVP 103
Query: 239 SIVWASSSSVYG--LNTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYNHIY-GLALTG 294
+V SS +VYG + P +E P Y+ K E++ + + L +T
Sbjct: 104 RVVVTSSVAVYGAHPDNPAPLTEDAPLRGSPEFAYSRDKAEVEQLLAEFRRRHPELNVTV 163
Query: 295 LRFFTVYGPWGRPDMAYFF 313
LR T+ GP R F
Sbjct: 164 LRPATILGPGTRNTTRDFL 182
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 75/369 (20%), Positives = 123/369 (33%), Gaps = 76/369 (20%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN-SYYDPSLKRARQKLLQKH--QVFIVE 176
+ LV G +GF+G H L L N +D R +L +V
Sbjct: 1 SCLVVGGSGFLGRHLVEQL-------LRRGNPTVHVFD---IRPTFELDPSSSGRVQFHT 50
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GDL D L K F+ V H A+ N Y N+ G N++E C+
Sbjct: 51 GDLTDPQDLEKAFNEKGPNVVFHTASPD----HGSNDDLYYKVNVQGTRNVIEACRKCGV 106
Query: 237 QPSIVWASSSSVYGLNTQVPFSES-HRTDQPASLYAATKKAGEE-IAHTYNHIYGLALTG 294
+ + +S+S V+ + ES D+ Y TK E+ + + GL
Sbjct: 107 KKLVYTSSASVVFNGQDIINGDESLPYPDKHQDAYNETKALAEKLVLKANDPESGLLTCA 166
Query: 295 LRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD------DREVARDFTYIDDVVKG 348
LR ++GP G + + K D DFTY+++V
Sbjct: 167 LRPAGIFGP-GDRQLVPGL----------LKAAKNGKTKFQIGDGNNLFDFTYVENVAHA 215
Query: 349 CVGA---LDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI 405
+ A L ++ + G+ + + N P+ + L + I
Sbjct: 216 HILAADALLSSSHAETVAGE--------AFFITNDEPIYFWDFARAIWEGLGYER-PPSI 266
Query: 406 RMPR--------------------NGDVPYTHA--------NVSLAYKDFGYKPTTDLAA 437
++PR P+ A N+ A K GY P L
Sbjct: 267 KLPRPVALYLASLLEWTCKVLGKEPTFTPFRVALLCSTRYFNIEKAKKRLGYTPVVTLEE 326
Query: 438 GLRKFVKWY 446
G+ + ++W+
Sbjct: 327 GIERTLQWF 335
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 55/184 (29%), Positives = 92/184 (50%), Gaps = 11/184 (5%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGL----DNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
L+TG G GS+ + L ++G V GL +FN+ + + K ++ + G
Sbjct: 4 LITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNV-NKARMKLHYG 62
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIA-GFVNLLEVCKSVNP 236
DL D+ L ++ D + T + +LAAQ+ V+ + + P+ Y A G + LLE +++
Sbjct: 63 DLTDSSNLRRIIDEIKPTEIYNLAAQSHVKVSFEIPE-YTADVDGIGTLRLLEAVRTLGL 121
Query: 237 QPSIVW--ASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGL-ALT 293
S+ + AS+S +YG ++P +E+ P S YAA K I Y YGL A+
Sbjct: 122 IKSVKFYQASTSELYGKVQEIPQNET-TPFYPRSPYAAAKLYAHWITVNYREAYGLFAVN 180
Query: 294 GLRF 297
G+ F
Sbjct: 181 GILF 184
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-12
Identities = 50/213 (23%), Positives = 73/213 (34%), Gaps = 29/213 (13%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--------------DPSLKRARQ 164
M VL+ G G+ G +L L KRG V +DN +
Sbjct: 1 MKVLILGGDGYCGWPTALHLSKRGHEVCIVDNLVRRRIDVELGLESLTPIASIHERLRAW 60
Query: 165 KLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVAS---NI 221
K L + GD D L +L V+H A Q Y+M + + + N+
Sbjct: 61 KELTGKTIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMIDREHANYTQHNNV 120
Query: 222 AGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT----QVPFSESH--RTD------QPASL 269
G +NLL K +P +V + YG + + H R D Q S
Sbjct: 121 IGTLNLLFAIKEFDPDCHLVKLGTMGEYGTPNIDIPEGYITIEHNGRRDTLPYPKQAGSW 180
Query: 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYG 302
Y +K +G+ +T L VYG
Sbjct: 181 YHLSKVHDSHNIMFACKAWGIRITDLNQGVVYG 213
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 65/195 (33%), Positives = 87/195 (44%), Gaps = 33/195 (16%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGL----DNFNS------YYDPSLKRARQKLLQKHQ 171
L+TG G GS+ + L +G V G+ NFN+ Y DP +AR KL H
Sbjct: 10 LITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKL---HY 66
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIA-GFVNLLEV 230
GDL+DA L + D + V +LAAQ+ V + + P Y A +A G + LLE
Sbjct: 67 -----GDLSDASSLRRWLDDIKPDEVYNLAAQSHVAVSFEMPD-YTADVVATGALRLLEA 120
Query: 231 CKSVNPQPSIV----WASSSSVYGLNTQVPFSES---HRTDQPASLYAATKKAGEEIAHT 283
+ + A SS +YG +T P SE+ H P S YA K A
Sbjct: 121 VRLHGQETGRQIKYYQAGSSEMYG-STPPPQSETTPFH----PRSPYAVAKVAAHWYTVN 175
Query: 284 YNHIYGL-ALTGLRF 297
Y YGL A G+ F
Sbjct: 176 YREAYGLFACNGILF 190
|
Length = 340 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-10
Identities = 45/134 (33%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI-V 175
G VLVTG GF GS SL L + G V G DP +LL +
Sbjct: 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS-----LDPPTSPNLFELLNLAKKIEDH 57
Query: 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
GD+ DA L K V HLAAQ VR + +P +N+ G VNLLE +++
Sbjct: 58 FGDIRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIG 117
Query: 236 PQPSIVWASSSSVY 249
++V +S Y
Sbjct: 118 SVKAVVNVTSDKCY 131
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-09
Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 24/165 (14%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+ GA GF+G + L ++G V L N+ + V +VEGDL
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLVR-NTKRLSKEDQE--------PVAVVEGDLR 51
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D L+ V V+HLA A ++ + + ++ G N+LE K
Sbjct: 52 DLDSLSDAVQGV--DVVIHLAG------APRDTRDFCEVDVEGTRNVLEAAK-EAGVKHF 102
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYN 285
++ SS YG + S P+S Y A K E + +
Sbjct: 103 IFISSLGAYG-DLHEETEPS-----PSSPYLAVKAKTEAVLREAS 141
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND 181
LVTG GF+G H L +R + + + + + P L +K K V +EGD+ D
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTDIEGDIKD 62
Query: 182 APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIV 241
L + V V+H AA V N + N+ G +LE C N +V
Sbjct: 63 LSFLFRACQGVSV--VIHTAAIVDVFG-PPNYEELEEVNVNGTQAVLEACVQNN-VKRLV 118
Query: 242 WASSSSVYGLNTQVPFSESHRTDQP-----ASLYAATKKAGEEI 280
+ SS V G N + + D P YA++K E I
Sbjct: 119 YTSSIEVAGPNFKGRPIFNGVEDTPYEDTSTPPYASSKLLAENI 162
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 87/371 (23%), Positives = 152/371 (40%), Gaps = 76/371 (20%)
Query: 119 MTVLVTGAAGFVGS----HCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
M +LVTG AGF+GS H + D V+ +D Y +L+ + + ++
Sbjct: 1 MKILVTGGAGFIGSAVVRHI---INNTQDSVVNVDKLT--YAGNLESL--ADVSDSERYV 53
Query: 175 VEG-DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS 233
E D+ D L ++F V+HLAA++ V ++ P +++ +NI G LLE ++
Sbjct: 54 FEHADICDRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARN 113
Query: 234 VNPQPSIVWA---------------SSSSVYG---------LNTQVPFSESHRTDQPASL 269
W+ S+ VYG + ++P P+S
Sbjct: 114 -------YWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTAYAPSSP 166
Query: 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKT 329
Y+A+K + + + + YGL YGP+ P+ + L+GK + +Y
Sbjct: 167 YSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGK 226
Query: 330 QDDREVARDFTYIDD--------VVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS 381
D RD+ Y++D V +G G G G KK L V
Sbjct: 227 GDQ---IRDWLYVEDHARALYKVVTEGKAGETYNIG---GHNEKK----NLDV------- 269
Query: 382 PVPVGRLVSILENLL--NTKAKKHVIRMP-RNG-DVPYTHANVSLAYKDFGYKPTTDLAA 437
V + +L+ ++ T ++ + + R G D Y + S ++ G+KP +
Sbjct: 270 ---VLTICDLLDEIVPKATSYREQITYVADRPGHDRRYA-IDASKISRELGWKPQETFES 325
Query: 438 GLRKFVKWYVS 448
G+RK V+WY++
Sbjct: 326 GIRKTVEWYLA 336
|
Length = 352 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 51/227 (22%), Positives = 80/227 (35%), Gaps = 50/227 (22%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDG---VLGLDNFNSYYDPSLKR--ARQKLLQKHQV 172
G T+LVTG AG +GS + K G V D + L R + K +
Sbjct: 2 GKTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLH---ELVRELRSRFPHDKLRF 58
Query: 173 FIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK 232
I GD+ D L + F V H AA V NP+ + +N+ G N+++
Sbjct: 59 II--GDVRDKERLRRAFKERGPDIVFHAAALKHVPSMEDNPEEAIKTNVLGTKNVIDAAI 116
Query: 233 SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI---AHTYNHIYG 289
+ + ++ +V P ++ ATK+ E++ + Y+
Sbjct: 117 ENGVEKFVCISTDKAVN----------------PVNVMGATKRVAEKLLLAKNEYSS--S 158
Query: 290 LALTGLRFFTVYGPWGR-------------------PDMAYFFFTKD 317
+ +RF V G G PDM FF T
Sbjct: 159 TKFSTVRFGNVLGSRGSVLPLFKKQIKKGGPLTVTDPDMTRFFMTIP 205
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 29/211 (13%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+TGA G +G LK+RG V+G RA L DL
Sbjct: 2 ILITGATGMLGRALVRLLKERGYEVIGTGR---------SRASLFKL----------DLT 42
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D + + +++ AA V +P+ N+ NL K V + +
Sbjct: 43 DPDAVEEAIRDYKPDVIINCAAYTRVDKCESDPELAYRVNVLAPENLARAAKEVGAR--L 100
Query: 241 VWASSSSVY-GLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
+ S+ V+ G + P+ E + P ++Y +K GE N Y L LR
Sbjct: 101 IHISTDYVFDG--KKGPYKEEDAPN-PLNVYGKSKLLGEVAVLNANPRY---LI-LRTSW 153
Query: 300 VYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330
+YG + + + + K ++V Q
Sbjct: 154 LYGELKNGENFVEWMLRLAAERKEVNVVHDQ 184
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 64/294 (21%), Positives = 98/294 (33%), Gaps = 64/294 (21%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +L+ G F+G L G V FN R R K V + GD
Sbjct: 1 MKILIIGGTRFIGKALVEELLAAGHDV---TVFN--------RGRTKPDLPEGVEHIVGD 49
Query: 179 LNDAPLLTKL-----FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS 233
ND L +L FDVV + +Y + L+ K
Sbjct: 50 RNDRDALEELLGGEDFDVV-----------------VDT-IAYTPRQVE---RALDAFKG 88
Query: 234 VNPQPSIVWASSSSVYGLNTQV-----PFSE-SHRTDQPASLYAATKKAGEEIAHTYNHI 287
Q ++ SS+SVY +V P E Y K+A E++
Sbjct: 89 RVKQ--YIFISSASVYLKPGRVITESTPLREPDAVGLSDPWDYGRGKRAAEDVLIEA--- 143
Query: 288 YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347
T +R +YGP +FF + + +G+ I V D F ++ D+ +
Sbjct: 144 AAFPYTIVRPPYIYGPGDYTGRLAYFFDR-LARGRPILV---PGDGHSLVQFIHVKDLAR 199
Query: 348 GCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK 401
+GA AG GG ++N+ V L+ L +A+
Sbjct: 200 ALLGA---AGNPKAIGG---------IFNITGDEAVTWDELLEACAKALGKEAE 241
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 61/278 (21%), Positives = 94/278 (33%), Gaps = 40/278 (14%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVF----IV 175
LVTG GF+G H L + G+ V D R +LL+ +
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFD----------LRFSPELLEDFSKLQVITYI 50
Query: 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
EGD+ D L + V+H AA V + + N+ G N+L+ C
Sbjct: 51 EGDVTDKQDLRRALQGSDV--VIHTAAIIDVF-GKAYRDTIMKVNVKGTQNVLDACVKAG 107
Query: 236 PQPSIVWASSSSVYGLNTQ-VPFSESH----RTDQPASLYAATKKAGEEIAHTYNHIY-- 288
+V+ SS V G N+ P Y +K E++ N
Sbjct: 108 -VRVLVYTSSMEVVGPNSYGQPIVNGDETTPYESTHQDPYPESKALAEKLVLKANGSTLK 166
Query: 289 --GLALT-GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345
G T LR ++G G P F F + K D+ V D Y+ +V
Sbjct: 167 NGGRLYTCALRPAGIFGE-GDP----FLFPFLVRLLKNGLAKFRTGDKNVLSDRVYVGNV 221
Query: 346 VKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPV 383
+ A ++ KK + Y + + +P
Sbjct: 222 AWAHI----LAARALQD-PKKASSIAGQFYFISDDTPH 254
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 26/184 (14%)
Query: 121 VLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+TG G +GS + L+KR D V+ D K +L ++ D
Sbjct: 2 ILITGGLGQIGSELAKLLRKRYGKDNVIASD--------IRKPPAHVVLSGPFEYLDVLD 53
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ + T ++HLAA +NP N+ G N+LE+ + N
Sbjct: 54 FKSLEEIVVNHKI---TWIIHLAALLSAV-GEKNPPLAWDVNMNGLHNVLELAREHNL-- 107
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQ-----PASLYAATKKAGEEIAHTYNHIYGLALT 293
I S+ +G P + + T P ++Y +K A E + Y+H +G+
Sbjct: 108 RIFVPSTIGAFG-----PTTPRNNTPDDTIQRPRTIYGVSKVAAELLGEYYHHKFGVDFR 162
Query: 294 GLRF 297
LR+
Sbjct: 163 SLRY 166
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 39/111 (35%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M VLVTGA GFVGS L ++G+ V L + ++ L+ V IVEGD
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVL---------VRPTSDRRNLEGLDVEIVEGD 51
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
L D L K V + H+AA R +P+ A+N+ G NLL
Sbjct: 52 LRDPASLRK--AVAGCRALFHVAAD--YRLWAPDPEEMYAANVEGTRNLLR 98
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 55/243 (22%), Positives = 89/243 (36%), Gaps = 44/243 (18%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDG---VLGLDNFNSYYDPSLKRARQKLLQKHQ-- 171
G TVLVTG G +GS + K + D + Y +L +K
Sbjct: 249 TGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLY------LIDMELREKFPEL 302
Query: 172 --VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
F + GD+ D + + + V H AA V NP+ + +N+ G N+ E
Sbjct: 303 KLRFYI-GDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAE 361
Query: 230 VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYG 289
+ ++ ++ +V P ++ ATK+ E++ N
Sbjct: 362 AAIKNGVKKFVLISTDKAVN----------------PTNVMGATKRLAEKLFQAANRNVS 405
Query: 290 LALT---GLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344
T +RF V G G P F K I +G + V T D ++ R F I +
Sbjct: 406 GTGTRFCVVRFGNVLGSRGSVIP-----LFKKQIAEGGPLTV--T--DPDMTRFFMTIPE 456
Query: 345 VVK 347
V+
Sbjct: 457 AVQ 459
|
Length = 588 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 54/216 (25%), Positives = 82/216 (37%), Gaps = 42/216 (19%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +L+TGA G +G+ AL + V+ D RA E D
Sbjct: 1 MKILITGANGQLGTELRRALPGEFE-VIATD-----------RA-------------ELD 35
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ D + ++ V++ AA V A P+ A N G NL V +
Sbjct: 36 ITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGAR- 94
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE--IAHTYNHIYGLALTGLR 296
+V S+ V+ P+ E+ + P ++Y +K AGEE A H+ LR
Sbjct: 95 -LVHISTDYVFDGEKGGPYKETDTPN-PLNVYGRSKLAGEEAVRAAGPRHLI------LR 146
Query: 297 FFTVYGPWGRPDMAYFFFT--KDILQGKTIDVYKTQ 330
VYG +G F T + +GK + V Q
Sbjct: 147 TSWVYGEYGNN----FVKTMLRLAKEGKELKVVDDQ 178
|
Length = 281 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-06
Identities = 45/194 (23%), Positives = 68/194 (35%), Gaps = 44/194 (22%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGA+GFV SH L +RG V DPS K + DL+
Sbjct: 1 VLVTGASGFVASHVVEQLLERGYKVRAT-----VRDPS----------KVKKVNHLLDLD 45
Query: 181 DAPLLTKLFDVVPF------------THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLL 228
P +L V H+A V ++ ++P + I G +N L
Sbjct: 46 AKPGRLELAVADLTDEQSFDEVIKGCAGVFHVATP--VSFSSKDPNEVIKPAIGGTLNAL 103
Query: 229 EVCKSVNPQPSIVWASSSSVYGLN----TQVPFSESHRTD--------QPASLYAATKKA 276
+ + V SS+ + + E + A +YAA+K
Sbjct: 104 KAAAAAKSVKRFVLTSSAGSVLIPKPNVEGIVLDEKSWNLEEFDSDPKKSAWVYAASKTL 163
Query: 277 GEEIAHTY---NHI 287
E+ A + N+I
Sbjct: 164 AEKAAWKFADENNI 177
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|224015 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 42/167 (25%), Positives = 65/167 (38%), Gaps = 26/167 (15%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+TG G +G + L+K G V L +A Q L V + EG
Sbjct: 1 ILITGGTGLIGRALTARLRKGGHQVTILTR-------RPPKASQNLHP--NVTLWEG--- 48
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQ--AGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
A LT D V++LA + A R+ + + S I L+E+ + +P
Sbjct: 49 LADALTLGIDA-----VINLAGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKP 103
Query: 239 SIVWASSSSV--YGLNTQVPFSESHRTDQPASLYAA-TKKAGEEIAH 282
V S+S+V YG + +E P + A + EE A
Sbjct: 104 K-VLISASAVGYYGHSGDRVVTE---ESPPGDDFLAQLCQDWEEEAL 146
|
Length = 297 |
| >gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 63/256 (24%), Positives = 94/256 (36%), Gaps = 35/256 (13%)
Query: 82 HQHSLLSSSFFSSSFSTGGAEWEKQVRHSATPRRPN------GMTVLVTGAAGFVGSHCS 135
H S +SS +S S A+ V ATP P V+V G G+ G +
Sbjct: 5 HLLSTSTSSKAFTSASPASAQSTPAVTELATPSAPGSSSSSKKKKVMVIGGDGYCGWATA 64
Query: 136 LALKKRG--------------DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND 181
L L KRG D LGLD+ + R K + ++ + GD+ D
Sbjct: 65 LHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDICD 124
Query: 182 APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYV---ASNIAGFVNLLEVCKSVNPQP 238
L++ F V+H Q Y+M + V +N+ G +N+L K P
Sbjct: 125 FEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDC 184
Query: 239 SIVWASSSSVYGL-NTQVP-----FSESHRTD------QPASLYAATKKAGEEIAHTYNH 286
+V + YG N + + + RTD Q +S Y +K
Sbjct: 185 HLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCK 244
Query: 287 IYGLALTGLRFFTVYG 302
+G+ T L VYG
Sbjct: 245 AWGIRATDLNQGVVYG 260
|
Length = 442 |
| >gnl|CDD|178326 PLN02725, PLN02725, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 4e-06
Identities = 43/187 (22%), Positives = 70/187 (37%), Gaps = 29/187 (15%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND 181
V G G VGS A+ ++ + LG N +L+ H+ E DL
Sbjct: 1 FVAGHRGLVGS----AIVRKLEA-LGFTNL--------------VLRTHK----ELDLTR 37
Query: 182 APLLTKLFDVVPFTHVLHLAAQAGVRYA-MQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
+ F T+V+ AA+ G +A M P ++ N+ N+++ + +
Sbjct: 38 QADVEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KL 96
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASL----YAATKKAGEEIAHTYNHIYGLALTGLR 296
++ SS +Y P E+ P YA K AG ++ Y YG
Sbjct: 97 LFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGM 156
Query: 297 FFTVYGP 303
+YGP
Sbjct: 157 PTNLYGP 163
|
Length = 306 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 52/188 (27%), Positives = 73/188 (38%), Gaps = 35/188 (18%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+LVTGA G +G + L +RG V+ LD R +L DL
Sbjct: 1 ILVTGANGQLGRELTRLLAERGVEVVALD-------------RPEL-----------DLT 36
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
D + L V++ AA V A P+ A N G NL E C + +
Sbjct: 37 DPEAVAALVREARPDVVVNAAAYTAVDKAESEPELAYAVNALGPGNLAEACAARG--APL 94
Query: 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYN--HIYGLALTGLRFF 298
+ S+ V+ P+ E T P ++Y TK AGE+ N H+ LR
Sbjct: 95 IHISTDYVFDGAKGGPYREDDPTG-PLNVYGRTKLAGEQAVLAANPRHLI------LRTA 147
Query: 299 TVYGPWGR 306
VYG +G
Sbjct: 148 WVYGEYGN 155
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 85/369 (23%), Positives = 129/369 (34%), Gaps = 76/369 (20%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
VL+ G GF+G H S + + D V G+D + R EG
Sbjct: 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHF--------FEG 53
Query: 178 DLNDA----PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGF-----VNLL 228
D+ K DV +L L A A P +YV + F NL
Sbjct: 54 DITINKEWIEYHVKKCDV-----ILPLVAIA-------TPATYVKQPLRVFELDFEANLP 101
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPASLYAATKKAGEEIAH 282
V +V +V+ S+S VYG+ F ++P +YA +K+ + +
Sbjct: 102 IVRSAVKYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLMDRVIW 161
Query: 283 TYNHIYGLALTGLRFFTVYGPWGRPDMAYFF----------FTKDILQGKTIDVYKTQDD 332
Y GL T R F GP D Y F I++G+ I D
Sbjct: 162 AYGMEEGLNFTLFRPFNWIGP--GLDSIYTPKEGSSRVVTQFLGHIVRGEPI---SLVDG 216
Query: 333 REVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGN-TSPVPVGRLVSI 391
R FT IDD + + ++ K G A ++YN+GN + V L +
Sbjct: 217 GSQKRAFTDIDDGIDALMKIIEN----------KDGVASGKIYNIGNPKNNHSVRELANK 266
Query: 392 LENLLNT------KAKKHVIRMPRNG--------DVPYTHANVSLAYKDFGYKPTTDLAA 437
+ L AKK + +G DV + ++ G+ P T +
Sbjct: 267 MLELAAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRVPKIDNTMQELGWAPKTTMDD 326
Query: 438 GLRKFVKWY 446
LR+ + Y
Sbjct: 327 ALRRIFEAY 335
|
Length = 347 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 42/178 (23%), Positives = 66/178 (37%), Gaps = 25/178 (14%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLG----LDNFNSYYDPSLKRARQKLLQKHQVFIV 175
VLVTGA GF+ SH L K G V G L LK + ++ V
Sbjct: 1 LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSK-----SAKLKALLKAAGYNDRLEFV 55
Query: 176 EGDLNDAPLLTKLFDVVP-FTHVLHLAAQAGVRYAMQNPQ-SYVASNIAGFVNLLEVCKS 233
D AP + + +V+H+A+ + + + + + G +N+LE K+
Sbjct: 56 IVDDLTAP--NAWDEALKGVDYVIHVASP--FPFTGPDAEDDVIDPAVEGTLNVLEAAKA 111
Query: 234 VNPQPSIVWASS-SSVYGLN---TQVPFSESHRTD------QPASLYAATKKAGEEIA 281
+V SS ++V F+E D Y A+K E+ A
Sbjct: 112 AGSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLTISKSNGLDAYIASKTLAEKAA 169
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 6e-05
Identities = 52/196 (26%), Positives = 67/196 (34%), Gaps = 26/196 (13%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
VLVTGA GF+G L RG R + + + D+
Sbjct: 1 KVLVTGANGFIGRALVDKLLSRG-----------EEVRIAVRNAENAEPSVVLAEL-PDI 48
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGV-RYAMQNPQS-YVASNIAGFVNLLEVCKSVNPQ 237
+ L D V+HLAA+ V +P S Y N L +
Sbjct: 49 DSFTDLFLGVDA-----VVHLAARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQGVK 103
Query: 238 PSIVWASSSSVYGLNTQ-VPFSESHRTDQPA--SLYAATKKAGEEIAHTYNHIYGLALTG 294
V+ SS V G T PF E TD PA Y +K E G+ +
Sbjct: 104 -RFVFLSSVKVNGEGTVGAPFDE---TDPPAPQDAYGRSKLEAERALLELGASDGMEVVI 159
Query: 295 LRFFTVYGPWGRPDMA 310
LR VYGP R + A
Sbjct: 160 LRPPMVYGPGVRGNFA 175
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 59/243 (24%), Positives = 95/243 (39%), Gaps = 41/243 (16%)
Query: 121 VLVTGAAGFVGSHCSLALKKRG-DGVLGLDN------FNSYYDPSLKRARQKLLQKHQVF 173
++VTG AGF+GS+ AL +G +L +DN F + D + K +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLDIADYMDK--EDFLAQ 59
Query: 174 IVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLL 228
I+ GD D + H A + +Y M N Y LL
Sbjct: 60 IMAGD-----------DFGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSK-------ELL 101
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY 288
C + + ++ASS++ YG T F E ++P ++Y +K +E
Sbjct: 102 HYC--LEREIPFLYASSAATYGGRTDD-FIEEREYEKPLNVYGYSKFLFDEYVRQILPEA 158
Query: 289 GLALTGLRFFTVYGP--WGRPDMAY--FFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344
+ G R+F VYGP + MA F + G+ +++ + RDF Y+ D
Sbjct: 159 NSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFEGSE--NFKRDFVYVGD 216
Query: 345 VVK 347
V
Sbjct: 217 VAA 219
|
Length = 308 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 44/190 (23%), Positives = 70/190 (36%), Gaps = 25/190 (13%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+++TG GF+G + L G V+ L R K +V +G
Sbjct: 1 KIVITGGTGFIGRALTRRLTAAGHEVV-----------VLSRRPGKAEGLAEVITWDGLS 49
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQ--AGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
L V++LA + A R+ N + ++S I L+E +
Sbjct: 50 LGPWEL------PGADAVINLAGEPIACRRWTEANKKEILSSRIESTRVLVEAIANAPAP 103
Query: 238 PSIVWASSSSV--YGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
P V S+S+V YG + +E+ + + A KA E+ A G + L
Sbjct: 104 PK-VLISASAVGYYGHSGDEVLTENSPSGKDFL--AEVCKAWEKAAQPA-SELGTRVVIL 159
Query: 296 RFFTVYGPWG 305
R V GP G
Sbjct: 160 RTGVVLGPDG 169
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 45/190 (23%), Positives = 68/190 (35%), Gaps = 26/190 (13%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+TG GF+G + L KRG V L R + EG
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTIL-------------TRSPPPGANT--KWEGYKP 45
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQ--AGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
A + V++LA + A R+ + Q S I L+E + Q
Sbjct: 46 WAGEDADSLE--GADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRLLVEAIAA-AEQK 102
Query: 239 SIVWASSSSV--YGLNTQVPFSESHRTDQPASLYAA-TKKAGEEIAHTYNHIYGLALTGL 295
V+ S+S+V YG + ++E + A + EE A + G + L
Sbjct: 103 PKVFISASAVGYYGPSEDREYTEEDSP--AGDDFLAELCRDWEEAAQAAEDL-GTRVVLL 159
Query: 296 RFFTVYGPWG 305
R V GP G
Sbjct: 160 RTGIVLGPKG 169
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 49/206 (23%), Positives = 76/206 (36%), Gaps = 36/206 (17%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF----IVE 176
V VTG GF+G H L + G VL L SL A +++ + ++E
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVR-----SESLGEAHERIEEAGLEADRVRVLE 55
Query: 177 GDLN------DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLE 229
GDL A +L V HV+H AA Y Q P + +NI G ++LE
Sbjct: 56 GDLTQPNLGLSAAASRELAGKV--DHVIHCAAS----YDFQAPNEDAWRTNIDGTEHVLE 109
Query: 230 VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAATKKAGEEIAHTY---- 284
+ ++ Q S++ V G Q + Y +K E++
Sbjct: 110 LAARLDIQRFHY-VSTAYVAGNREGNIRETELNPGQNFKNPYEQSKAEAEQLVRAAATQI 168
Query: 285 -------NHIYGLALTGLRFFTVYGP 303
+ + G + TG R + G
Sbjct: 169 PLTVYRPSIVVGDSKTG-RIEKIDGL 193
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 10/103 (9%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
VLVTGA G+VG L + G V L P +V +V GDL
Sbjct: 1 VLVTGATGYVGGRLVPRLLQEGHQVRALVR-----SP---EKLADRPWSERVTVVRGDLE 52
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAG 223
D L + + + L + +G + + + A N A
Sbjct: 53 DPESLRAALEGIDTAYYLVHSMGSGGDFEEADRR--AARNFAR 93
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 53/202 (26%), Positives = 77/202 (38%), Gaps = 54/202 (26%)
Query: 117 NGMTVLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKRA----RQKLLQ--- 168
N ++L+TG G G S L+ Y+P K+ R +L Q
Sbjct: 3 NNKSILITGGTGSFGKAFISRLLEN--------------YNP--KKIIIYSRDELKQWEM 46
Query: 169 -------KHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNI 221
+ FI GD+ D LT+ V + V+H AA V A NP + +NI
Sbjct: 47 QQKFPAPCLRFFI--GDVRDKERLTRALRGVDY--VVHAAALKQVPAAEYNPFECIRTNI 102
Query: 222 AGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIA 281
G N+++ V L+T + P +LY ATK A +++
Sbjct: 103 NGAQNVIDAAIDNG---------VKRVVALSTD-------KAANPINLYGATKLASDKLF 146
Query: 282 HTYNHIYGLALTGLRFFTV-YG 302
N+I G G RF V YG
Sbjct: 147 VAANNISG--SKGTRFSVVRYG 166
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 0.001
Identities = 55/238 (23%), Positives = 88/238 (36%), Gaps = 42/238 (17%)
Query: 121 VLVTGAAGFVGSH-CS--LALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
VLVTG G +GS C L + + D F Y +++ ++ ++ G
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLY---EIRQELRQEYNDPKLRFFIG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D L + + V H AA V NP + +N+ G N+ E
Sbjct: 58 DVRDRERLERAMEQHGVDTVFHAAALKHVPLVEYNPMEAIKTNVLGTENVAEAAIE---- 113
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQ---PASLYAATKKAGEEI---AHTYNHIYGLA 291
G+ V S TD+ P ++ ATK+ E++ A+ +
Sbjct: 114 -----------NGVEKFVLIS----TDKAVNPTNVMGATKRLAEKLFQAANRESGSGKTR 158
Query: 292 LTGLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347
+ +RF V G G P F K I G + V T ++ R F I + V+
Sbjct: 159 FSVVRFGNVLGSRGSVIP-----LFKKQIANGGPVTV--T--HPDMTRFFMTIPEAVQ 207
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|178484 PLN02896, PLN02896, cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 54/214 (25%), Positives = 78/214 (36%), Gaps = 32/214 (14%)
Query: 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS-LKRARQKLLQKHQV 172
R T VTGA G++GS L +RG V + DP+ K + ++
Sbjct: 6 RESATGTYCVTGATGYIGSWLVKLLLQRGYTVHA-----TLRDPAKSLHLLSKWKEGDRL 60
Query: 173 FIVEGDLNDAPLLTKLFD--VVPFTHVLHLAA--QAGVRYAMQNPQSYVASNI-----AG 223
+ DL + FD V V H+AA + V N + YV S + G
Sbjct: 61 RLFRADLQE----EGSFDEAVKGCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKG 116
Query: 224 FVNLLEVCKSVNPQPSIVWASSSS-------------VYGLNTQVPFSESHRTDQPASLY 270
+N+L+ C +V+ SS S V Q P T +Y
Sbjct: 117 TLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVWNTKASGWVY 176
Query: 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPW 304
+K EE A Y G+ L + TV GP+
Sbjct: 177 VLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF 210
|
Length = 353 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 39/159 (24%), Positives = 59/159 (37%), Gaps = 27/159 (16%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+L+TGA G +G L G V+ L R +L DL
Sbjct: 1 RILITGANGQLGRELVQQLSPEGRVVVALT-------------RSQL-----------DL 36
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D L +L + V++ AA V A +P+ A N NL
Sbjct: 37 TDPEALERLLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHG--AR 94
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278
+V S+ V+ + P+ E T+ P ++Y +K AGE
Sbjct: 95 LVHISTDYVFDGEGKRPYREDDATN-PLNVYGQSKLAGE 132
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.004
Identities = 53/239 (22%), Positives = 97/239 (40%), Gaps = 30/239 (12%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL----QKHQVF 173
G V VTGA+G++ S L RG V + D + ++ + LL K ++
Sbjct: 5 GKLVCVTGASGYIASWIVKLLLLRGYTVKA-----TVRDLTDRKKTEHLLALDGAKERLK 59
Query: 174 IVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQS-YVASNIAGFVNLLEVCK 232
+ + DL + + + V H A+ V + +++PQ+ + + G +N+L CK
Sbjct: 60 LFKADLLEESSFEQAIEGC--DAVFHTASP--VFFTVKDPQTELIDPALKGTINVLNTCK 115
Query: 233 SVNPQPSIVWASSSSVYGLNTQVP-----------FSESHRTDQPASLYAATKKAGEEIA 281
++ SS++ L Q P FS+ + + Y +K E A
Sbjct: 116 ETPSVKRVILTSSTAAV-LFRQPPIEANDVVDETFFSDPSLCRETKNWYPLSKILAENAA 174
Query: 282 HTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF-FTKDILQGKTI---DVYKTQDDREVA 336
+ G+ + L + GP +P + + D + GK + Y+ D R+VA
Sbjct: 175 WEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNLFNNRFYRFVDVRDVA 233
|
Length = 322 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 476 | |||
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.98 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.98 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.97 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.97 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.96 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.96 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.96 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.96 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.94 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.93 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.93 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.92 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.92 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.92 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.91 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.91 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.91 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.9 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.9 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.9 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.9 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.89 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.89 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.89 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.89 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.89 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.89 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.89 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.89 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.89 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.88 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.88 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.88 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.87 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.87 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.86 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.86 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.86 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.86 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.85 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.85 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.85 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.85 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.85 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.85 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.85 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.84 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.84 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.84 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.84 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.84 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.84 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.83 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.83 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.83 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.83 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.83 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.82 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.82 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.82 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.82 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.82 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.82 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.82 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.82 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.82 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.82 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.81 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.81 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.81 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.81 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.81 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.81 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.81 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.81 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.81 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.81 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.81 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.81 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.8 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.8 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.8 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.79 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.79 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.79 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.79 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.79 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.79 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.78 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.78 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.78 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.78 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.78 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.78 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.78 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.77 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.77 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.77 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.77 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.77 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.77 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.77 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.76 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.76 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.76 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.76 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.76 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.75 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.75 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.75 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.75 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.74 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.74 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.74 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.74 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.74 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.74 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.74 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.73 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.73 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.72 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.72 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.71 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.7 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.69 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.69 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.69 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.68 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.66 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.66 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.64 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.64 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.63 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.63 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.62 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.61 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.6 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.56 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.55 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.55 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.54 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.54 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.53 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.53 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.52 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.51 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.48 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.45 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.4 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.38 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.29 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.27 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.21 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.12 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.09 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.99 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 98.99 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.94 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.92 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.9 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.84 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.74 | |
| PLN00106 | 323 | malate dehydrogenase | 98.71 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.58 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.55 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.54 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.48 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.36 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.32 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.22 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.12 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.1 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.09 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.99 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 97.95 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.91 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.89 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.86 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.64 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.63 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.62 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.59 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.58 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.53 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.52 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 97.48 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.46 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.43 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.39 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.35 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.28 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.23 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.17 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.16 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.15 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.1 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.07 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.06 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.06 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.04 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 96.99 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.99 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.98 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.97 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.97 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.95 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 96.94 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.93 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.92 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.92 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.92 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.9 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.89 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.89 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.88 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.88 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.85 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.83 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.81 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.78 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.74 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.71 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.71 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.69 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.68 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.68 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.67 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.65 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.64 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.6 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.58 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.58 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.56 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.55 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.47 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.46 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.46 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.37 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.34 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.32 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.3 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.27 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.27 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 96.25 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 96.22 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.19 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.16 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.14 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.12 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.06 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.06 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.06 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.04 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.03 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.01 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.99 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 95.99 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.96 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 95.95 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 95.94 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.94 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 95.93 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.92 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 95.87 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 95.85 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 95.83 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 95.82 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 95.78 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 95.77 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.72 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.7 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 95.69 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 95.67 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 95.65 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 95.64 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.62 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.58 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 95.58 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 95.56 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.55 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 95.5 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.48 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 95.47 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.46 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.41 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 95.38 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.35 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 95.31 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.31 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.28 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.19 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 95.15 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.13 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.09 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 95.08 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 95.07 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 95.06 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 95.02 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.0 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 94.97 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.97 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.87 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 94.87 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.84 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 94.84 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.84 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 94.81 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 94.78 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 94.75 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 94.73 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 94.7 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 94.69 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.67 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 94.63 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 94.62 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 94.6 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 94.57 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 94.55 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.51 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.51 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.5 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 94.5 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.47 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 94.46 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 94.45 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 94.44 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.43 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 94.42 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.35 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.35 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 94.31 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 94.29 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.27 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 94.26 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 94.25 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 94.23 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.22 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 94.22 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 94.22 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.21 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 94.17 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 94.14 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.12 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 94.08 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 94.07 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 94.06 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 94.04 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 93.83 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 93.83 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 93.79 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 93.79 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 93.76 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 93.75 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 93.74 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 93.71 | |
| COG2099 | 257 | CobK Precorrin-6x reductase [Coenzyme metabolism] | 93.71 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 93.63 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.6 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 93.6 | |
| KOG1196 | 343 | consensus Predicted NAD-dependent oxidoreductase [ | 93.56 |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=367.75 Aligned_cols=309 Identities=29% Similarity=0.430 Sum_probs=271.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||.||||+|.+.+|++.|++|+++|+-.....+..... .++++++|+.|.+.++++|+..++|.||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~--------~~~f~~gDi~D~~~L~~vf~~~~idaVi 72 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL--------QFKFYEGDLLDRALLTAVFEENKIDAVV 72 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc--------cCceEEeccccHHHHHHHHHhcCCCEEE
Confidence 68999999999999999999999999999998665443332211 1789999999999999999999999999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+||...+..+.++|-.+++.|+.||.+|+++|++.+++ +|||.||++|||.....|++|+.+. .|.++||.||++.|
T Consensus 73 HFAa~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~-~~vFSStAavYG~p~~~PI~E~~~~-~p~NPYG~sKlm~E 150 (329)
T COG1087 73 HFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVK-KFIFSSTAAVYGEPTTSPISETSPL-APINPYGRSKLMSE 150 (329)
T ss_pred ECccccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCC-EEEEecchhhcCCCCCcccCCCCCC-CCCCcchhHHHHHH
Confidence 999999999999999999999999999999999999997 9999999999999999999999998 69999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCC------C---CCCcHHHHHHHHHcCCc-eEEEee---CCCCceeEeceeHHHH
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWG------R---PDMAYFFFTKDILQGKT-IDVYKT---QDDREVARDFTYIDDV 345 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~------~---~~~~~~~~~~~~~~g~~-~~~~~~---~~~~~~~~~~v~v~Dv 345 (476)
++++.+.+.+++++++||.+++.|... . .+.+++..++.++..++ +.+++. --||.-.||||||.|+
T Consensus 151 ~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~iGe~~~~~thLip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DL 230 (329)
T COG1087 151 EILRDAAKANPFKVVILRYFNVAGACPDGTLGQRYPGATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDL 230 (329)
T ss_pred HHHHHHHHhCCCcEEEEEecccccCCCCCccCCCCCCcchHHHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHH
Confidence 999999999999999999999999521 1 12355666666665444 667641 1246789999999999
Q ss_pred HHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHH
Q 011841 346 VKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYK 425 (476)
Q Consensus 346 a~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~ 425 (476)
|++.+.+++.-.. +|.. .+||++++..+|+.|+++.++++.|++.+.+..+ .+.+|+...++|.+||++
T Consensus 231 A~aH~~Al~~L~~-~g~~---------~~~NLG~G~G~SV~evi~a~~~vtg~~ip~~~~~-RR~GDpa~l~Ad~~kA~~ 299 (329)
T COG1087 231 ADAHVLALKYLKE-GGSN---------NIFNLGSGNGFSVLEVIEAAKKVTGRDIPVEIAP-RRAGDPAILVADSSKARQ 299 (329)
T ss_pred HHHHHHHHHHHHh-CCce---------eEEEccCCCceeHHHHHHHHHHHhCCcCceeeCC-CCCCCCceeEeCHHHHHH
Confidence 9999999988766 3221 6999999999999999999999999988777666 678999999999999999
Q ss_pred hcCCCccc-CHHHHHHHHHHHHHH
Q 011841 426 DFGYKPTT-DLAAGLRKFVKWYVS 448 (476)
Q Consensus 426 ~LG~~p~~-~l~e~l~~~v~~~~~ 448 (476)
+|||+|++ +|++.++..+.|...
T Consensus 300 ~Lgw~p~~~~L~~ii~~aw~W~~~ 323 (329)
T COG1087 300 ILGWQPTYDDLEDIIKDAWDWHQQ 323 (329)
T ss_pred HhCCCcccCCHHHHHHHHHHHhhh
Confidence 99999999 899999999999984
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=364.25 Aligned_cols=320 Identities=27% Similarity=0.416 Sum_probs=281.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|++|||||.||||+.+++.++++.. +|+.++.-. +..+.. -.......++..++++|++|.+.+.++|+..++|+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLT--YAgn~~-~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~ 77 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLT--YAGNLE-NLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDA 77 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEeccc--ccCCHH-HHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCe
Confidence 6899999999999999999999854 467766422 111112 12334456799999999999999999999888899
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCC--CCCCCCCCCCCCChHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQV--PFSESHRTDQPASLYAATK 274 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~--~~~E~~~~~~p~~~Y~~sK 274 (476)
|+|+|+-.+++.+-.+|..++++|+.||.+||+++++...+-||+++|+..|||.-... .++|+++. +|.++|++||
T Consensus 78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~-~PsSPYSASK 156 (340)
T COG1088 78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPY-NPSSPYSASK 156 (340)
T ss_pred EEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCC-CCCCCcchhh
Confidence 99999999999999999999999999999999999998865589999999999976543 68999987 8999999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHh
Q 011841 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354 (476)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~ 354 (476)
++++.+++.|.+.||++++|.|+.+-|||...+..+++.++-+++.|++++++ |+|.+.|||+||+|=++++..++.
T Consensus 157 AasD~lVray~~TYglp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvY---GdG~~iRDWl~VeDh~~ai~~Vl~ 233 (340)
T COG1088 157 AASDLLVRAYVRTYGLPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVY---GDGLQIRDWLYVEDHCRAIDLVLT 233 (340)
T ss_pred hhHHHHHHHHHHHcCCceEEecCCCCcCCCcCchhhhHHHHHHHHcCCCCcee---cCCcceeeeEEeHhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999 899999999999999999999998
Q ss_pred hcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccc----eeecCCCCCCCCcccccHHHHHHhcCCC
Q 011841 355 TAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK----HVIRMPRNGDVPYTHANVSLAYKDFGYK 430 (476)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~----~~~~~~~~~~~~~~~~d~~ka~~~LG~~ 430 (476)
.... + ++|||+++...+--|+++.|.+.+|+.... ...-..+++-...+..|.+|++++|||+
T Consensus 234 kg~~-G------------E~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~ 300 (340)
T COG1088 234 KGKI-G------------ETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWR 300 (340)
T ss_pred cCcC-C------------ceEEeCCCccchHHHHHHHHHHHhCccccchhhheEeccCCCCCccceeechHHHhhhcCCC
Confidence 8655 2 999999999999999999999999987762 3333456777788889999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHcCCCCcccc
Q 011841 431 PTTDLAAGLRKFVKWYVSYYGIQPRVKK 458 (476)
Q Consensus 431 p~~~l~e~l~~~v~~~~~~~~~~~~~~~ 458 (476)
|.+++++||+++++||+++..=|+.+++
T Consensus 301 P~~~fe~GlrkTv~WY~~N~~Ww~~l~~ 328 (340)
T COG1088 301 PQETFETGLRKTVDWYLDNEWWWEPLKD 328 (340)
T ss_pred cCCCHHHHHHHHHHHHHhchHHHhhhhc
Confidence 9999999999999999998766655443
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=389.72 Aligned_cols=306 Identities=25% Similarity=0.360 Sum_probs=252.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
...|+||||||+||||++|+++|+++|++|++++|........ ........+++++.+|+.+.. +.+ +|
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~----~~~~~~~~~~~~~~~Di~~~~-----~~~--~D 186 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKEN----LVHLFGNPRFELIRHDVVEPI-----LLE--VD 186 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhH----hhhhccCCceEEEECcccccc-----ccC--CC
Confidence 4568999999999999999999999999999999854321111 111222347888999987642 334 59
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCC----CCCCCChHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR----TDQPASLYA 271 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~----~~~p~~~Y~ 271 (476)
+|||+|+.........++..+++.|+.|+.+|+++|++.+. +||++||.+|||.....+.+|+.. +..|.+.|+
T Consensus 187 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg 264 (436)
T PLN02166 187 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYD 264 (436)
T ss_pred EEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchH
Confidence 99999998665445567889999999999999999999884 899999999999766667777641 235678899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC--CCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
.+|.++|.+++.+.+.++++++++||++||||+... ...+..++..+.+++++.++ +++++.++|+|++|+++++
T Consensus 265 ~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~~~~i~~~i~~~l~~~~i~v~---g~g~~~rdfi~V~Dva~ai 341 (436)
T PLN02166 265 EGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDDGRVVSNFVAQTIRKQPMTVY---GDGKQTRSFQYVSDLVDGL 341 (436)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCccchHHHHHHHHhcCCCcEEe---CCCCeEEeeEEHHHHHHHH
Confidence 999999999999998889999999999999997542 34567888999999999888 7788999999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCC
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGY 429 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~ 429 (476)
+.+++... . ++||+++++.+|+.|+++.+.+.+|.+..+...+. ...+.....+|++|++++|||
T Consensus 342 ~~~~~~~~--~------------giyNIgs~~~~Si~ela~~I~~~~g~~~~i~~~p~-~~~~~~~~~~d~~Ka~~~LGw 406 (436)
T PLN02166 342 VALMEGEH--V------------GPFNLGNPGEFTMLELAEVVKETIDSSATIEFKPN-TADDPHKRKPDISKAKELLNW 406 (436)
T ss_pred HHHHhcCC--C------------ceEEeCCCCcEeHHHHHHHHHHHhCCCCCeeeCCC-CCCCccccccCHHHHHHHcCC
Confidence 99987532 2 79999999999999999999999998776655543 345566778999999999999
Q ss_pred CcccCHHHHHHHHHHHHHHHcCC
Q 011841 430 KPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 430 ~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
+|+++++++|+++++||+++...
T Consensus 407 ~P~~sl~egl~~~i~~~~~~~~~ 429 (436)
T PLN02166 407 EPKISLREGLPLMVSDFRNRILN 429 (436)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999887654
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=381.73 Aligned_cols=317 Identities=29% Similarity=0.457 Sum_probs=260.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
..+|+||||||+||||++|+++|+++|++|++++|................ ....++.++.+|+.|.+.+.+++++.
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~- 91 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV- 91 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC-
Confidence 456899999999999999999999999999999986543322222111110 11136889999999999999999865
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
|+|||+|+.........++..++++|+.|+.+|+++|++.+++ +|||+||+++||...+.+..|+++. .|.++|+.+
T Consensus 92 -d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~e~~~~-~p~~~Y~~s 168 (348)
T PRK15181 92 -DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLPKIEERIG-RPLSPYAVT 168 (348)
T ss_pred -CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCCCCCCCCCC-CCCChhhHH
Confidence 9999999987666667788889999999999999999999986 9999999999997666677787765 788899999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
|.++|.+++.+.+.++++++++||++||||+..++ .+++.++.+++.++++.++ +++.+.++|+|++|+|+++
T Consensus 169 K~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~~~i~~~---g~g~~~rd~i~v~D~a~a~ 245 (348)
T PRK15181 169 KYVNELYADVFARSYEFNAIGLRYFNVFGRRQNPNGAYSAVIPRWILSLLKDEPIYIN---GDGSTSRDFCYIENVIQAN 245 (348)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCCCCccccCHHHHHHHHHcCCCcEEe---CCCCceEeeEEHHHHHHHH
Confidence 99999999999888899999999999999976543 4678888888999998888 7789999999999999999
Q ss_pred HHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcc----ce-eecCCCCCCCCcccccHHHH
Q 011841 350 VGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK----KH-VIRMPRNGDVPYTHANVSLA 423 (476)
Q Consensus 350 ~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~----~~-~~~~~~~~~~~~~~~d~~ka 423 (476)
+.++..... ..+ ++|||++++++|+.|+++.+.+.++.... .. ........+.....+|++|+
T Consensus 246 ~~~~~~~~~~~~~-----------~~yni~~g~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 314 (348)
T PRK15181 246 LLSATTNDLASKN-----------KVYNVAVGDRTSLNELYYLIRDGLNLWRNEQSRAEPIYKDFRDGDVKHSQADITKI 314 (348)
T ss_pred HHHHhcccccCCC-----------CEEEecCCCcEeHHHHHHHHHHHhCcccccccCCCcccCCCCCCcccccccCHHHH
Confidence 988765321 111 89999999999999999999999974321 11 11112344555678999999
Q ss_pred HHhcCCCcccCHHHHHHHHHHHHHHHc
Q 011841 424 YKDFGYKPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 424 ~~~LG~~p~~~l~e~l~~~v~~~~~~~ 450 (476)
+++|||+|+++++|+|+++++||+.+.
T Consensus 315 ~~~lGw~P~~sl~egl~~~~~w~~~~~ 341 (348)
T PRK15181 315 KTFLSYEPEFDIKEGLKQTLKWYIDKH 341 (348)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998763
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-48 Score=368.23 Aligned_cols=319 Identities=46% Similarity=0.663 Sum_probs=287.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
.++||||||.||||+|.+.+|+++|+.|+++|+..+++.++.++..+...+..++.++++|++|.+.++++|+..+||.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 47899999999999999999999999999999999999999999998888888999999999999999999999999999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
||+|+..++++++++|-.+++.|+.|+.+|++.|++.+. +.+||.||+.|||.....|++|+++...|.++|+.+|++.
T Consensus 82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~-~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~i 160 (343)
T KOG1371|consen 82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNV-KALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAI 160 (343)
T ss_pred EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCC-ceEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHHH
Confidence 999999999999999999999999999999999999995 5999999999999999999999999977999999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeeCcccC--CCCCCCCcHHHHHHHHH----------------cCCceEEEeeCCCCceeEec
Q 011841 278 EEIAHTYNHIYGLALTGLRFFTVYG--PWGRPDMAYFFFTKDIL----------------QGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G--~~~~~~~~~~~~~~~~~----------------~g~~~~~~~~~~~~~~~~~~ 339 (476)
|++++.+++.++..+++||.++++| |+++..+....+...++ -|.+.... +|+..+++
T Consensus 161 E~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p~v~~vaigr~~~l~v~g~d~~t~----dgt~vrdy 236 (343)
T KOG1371|consen 161 EEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLPYVFQVAIGRRPNLQVVGRDYTTI----DGTIVRDY 236 (343)
T ss_pred HHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccccccchhhcccccceeecCccccc----CCCeeecc
Confidence 9999999999999999999999999 76654332221111111 13333333 45899999
Q ss_pred eeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCccccc
Q 011841 340 TYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHAN 419 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d 419 (476)
+|+-|+|+..+.+++..... ++.++||++.+...++.+|+.++++++|.+.++..++. +++|..+++++
T Consensus 237 i~v~Dla~~h~~al~k~~~~----------~~~~i~Nlgtg~g~~V~~lv~a~~k~~g~~~k~~~v~~-R~gdv~~~ya~ 305 (343)
T KOG1371|consen 237 IHVLDLADGHVAALGKLRGA----------AEFGVYNLGTGKGSSVLELVTAFEKALGVKIKKKVVPR-RNGDVAFVYAN 305 (343)
T ss_pred eeeEehHHHHHHHhhccccc----------hheeeEeecCCCCccHHHHHHHHHHHhcCCCCccccCC-CCCCceeeeeC
Confidence 99999999999999886543 33489999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 420 VSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 420 ~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
+++++++|||+|+++++|+++++++|+.+++..
T Consensus 306 ~~~a~~elgwk~~~~iee~c~dlw~W~~~np~g 338 (343)
T KOG1371|consen 306 PSKAQRELGWKAKYGLQEMLKDLWRWQKQNPSG 338 (343)
T ss_pred hHHHHHHhCCccccCHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999999999888653
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=382.30 Aligned_cols=304 Identities=26% Similarity=0.377 Sum_probs=250.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++|+||||||+||||++|+++|+++|++|++++|..... ...........+++++.+|+.+.. +.+ +|
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~----~~~~~~~~~~~~~~~i~~D~~~~~-----l~~--~D 185 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGR----KENVMHHFSNPNFELIRHDVVEPI-----LLE--VD 185 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccc----hhhhhhhccCCceEEEECCccChh-----hcC--CC
Confidence 3668999999999999999999999999999998753321 111112233457889999987753 334 49
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCC----CCCCCChHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR----TDQPASLYA 271 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~----~~~p~~~Y~ 271 (476)
+|||+|+.........++...+++|+.++.+|+++|++.+. +||++||..+||.....+.+|+.. +..+.+.|+
T Consensus 186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~ 263 (442)
T PLN02206 186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYD 263 (442)
T ss_pred EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECChHHhCCCCCCCCCccccccCCCCCccchHH
Confidence 99999998665545567889999999999999999999884 899999999999776667777642 224568899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC--CCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
.+|.++|.+++.+.+.++++++++||++||||+.. ....+..++..++.++++.++ +++++.++|+|++|+|+++
T Consensus 264 ~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~~~~v~~~i~~~l~~~~i~i~---g~G~~~rdfi~V~Dva~ai 340 (442)
T PLN02206 264 EGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVY---GDGKQTRSFQFVSDLVEGL 340 (442)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccccchHHHHHHHHHcCCCcEEe---CCCCEEEeEEeHHHHHHHH
Confidence 99999999999998888999999999999999743 234567788888999999888 7789999999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCC
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGY 429 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~ 429 (476)
+.++++.. . ++|||++++.+|+.|+++.+.+.+|.+..+...+. ...+.....+|++|++++|||
T Consensus 341 ~~a~e~~~--~------------g~yNIgs~~~~sl~Elae~i~~~~g~~~~i~~~p~-~~~~~~~~~~d~sKa~~~LGw 405 (442)
T PLN02206 341 MRLMEGEH--V------------GPFNLGNPGEFTMLELAKVVQETIDPNAKIEFRPN-TEDDPHKRKPDITKAKELLGW 405 (442)
T ss_pred HHHHhcCC--C------------ceEEEcCCCceeHHHHHHHHHHHhCCCCceeeCCC-CCCCccccccCHHHHHHHcCC
Confidence 99987532 2 78999999999999999999999997766555443 234556677999999999999
Q ss_pred CcccCHHHHHHHHHHHHHHHc
Q 011841 430 KPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 430 ~p~~~l~e~l~~~v~~~~~~~ 450 (476)
+|+++++|+|+++++||++..
T Consensus 406 ~P~~~l~egl~~~~~~~~~~~ 426 (442)
T PLN02206 406 EPKVSLRQGLPLMVKDFRQRV 426 (442)
T ss_pred CCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998764
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=358.06 Aligned_cols=312 Identities=21% Similarity=0.254 Sum_probs=251.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCC-chHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD-PSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~-~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+||||||+||||++|+++|+++|++|++++|..+... .......... ....+++++.+|++|.+.+.+++++.++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999999754221 1111111000 01246899999999999999999988889
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
+|||+|+.........++...+++|+.|+.+|+++|++.+++ .+|||+||.++||.....+.+|+.+. .|.++|+.+
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 159 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPF-YPRSPYAAA 159 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCC-CCCChhHHH
Confidence 999999986655555667788899999999999999998764 38999999999997666678888766 788999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC---CcHHHHHHHHHcCCce-EEEeeCCCCceeEeceeHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD---MAYFFFTKDILQGKTI-DVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
|.++|.+++.+++++|+++++.|+.++|||+...+ ..+..++..+..+++. .++ +++++.++|+||+|+|+++
T Consensus 160 K~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~rd~i~V~D~a~a~ 236 (343)
T TIGR01472 160 KLYAHWITVNYREAYGLFAVNGILFNHESPRRGENFVTRKITRAAAKIKLGLQEKLYL---GNLDAKRDWGHAKDYVEAM 236 (343)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeecccCCCCCCccccchHHHHHHHHHHcCCCCceee---CCCccccCceeHHHHHHHH
Confidence 99999999999998999999999999999974332 2234455666677643 344 6788999999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccce-------------------eecC-CC
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH-------------------VIRM-PR 409 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~-------------------~~~~-~~ 409 (476)
+.+++++. . ++|||++++++|+.|+++.+.+.+|++..+. ..+. ..
T Consensus 237 ~~~~~~~~--~------------~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (343)
T TIGR01472 237 WLMLQQDK--P------------DDYVIATGETHSVREFVEVSFEYIGKTLNWKDKGINEVGRCKETGKVHVEIDPRYFR 302 (343)
T ss_pred HHHHhcCC--C------------ccEEecCCCceeHHHHHHHHHHHcCCCcccccccccccccccccCceeEEeCccccC
Confidence 99997642 1 6899999999999999999999999754311 1111 13
Q ss_pred CCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHH
Q 011841 410 NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 448 (476)
Q Consensus 410 ~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~ 448 (476)
.++......|++|++++|||+|+++++|+|+++++||++
T Consensus 303 ~~~~~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~~ 341 (343)
T TIGR01472 303 PTEVDLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDLE 341 (343)
T ss_pred CCccchhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHHh
Confidence 456667788999999999999999999999999999974
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=366.95 Aligned_cols=320 Identities=23% Similarity=0.309 Sum_probs=250.4
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc------h-------HHHHHH-hhhcCCceEEEEeecC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP------S-------LKRARQ-KLLQKHQVFIVEGDLN 180 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~------~-------~~~~~~-~~~~~~~v~~~~~Dl~ 180 (476)
..++|+||||||+||||++|+++|+++|++|++++|....... . ...... ......+++++.+|+.
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~ 123 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDIC 123 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCC
Confidence 3577899999999999999999999999999999864321100 0 000000 0011236899999999
Q ss_pred CHHHHHHhhccCCccEEEEccccCChhhhhcCh---HHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCC
Q 011841 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP---QSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 181 d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~---~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
|.+.+.+++++.++|+|||+|+.........++ +..+++|+.|+.+++++|++.+++.+||++||.++||... .+.
T Consensus 124 d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~~~ 202 (442)
T PLN02572 124 DFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-IDI 202 (442)
T ss_pred CHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-CCC
Confidence 999999999987789999999875554444443 4567899999999999999998755899999999998642 122
Q ss_pred CC-----------CC--CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC----------------
Q 011841 258 SE-----------SH--RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD---------------- 308 (476)
Q Consensus 258 ~E-----------~~--~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~---------------- 308 (476)
+| ++ .+..|.++|+.+|.++|.+++.+++.+|++++++||++||||+....
T Consensus 203 ~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~ 282 (442)
T PLN02572 203 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVF 282 (442)
T ss_pred cccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccch
Confidence 22 22 13367789999999999999999999999999999999999985431
Q ss_pred -CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHH
Q 011841 309 -MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGR 387 (476)
Q Consensus 309 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~e 387 (476)
..+..++..+.+|+++.++ +++++.++|+||+|+|++++.++++....+ .+.+||+++ ..+++.|
T Consensus 283 ~~~i~~~~~~~~~g~~i~v~---g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g----------~~~i~Nigs-~~~si~e 348 (442)
T PLN02572 283 GTALNRFCVQAAVGHPLTVY---GKGGQTRGFLDIRDTVRCIEIAIANPAKPG----------EFRVFNQFT-EQFSVNE 348 (442)
T ss_pred hhHHHHHHHHHhcCCCceec---CCCCEEECeEEHHHHHHHHHHHHhChhhcC----------ceeEEEeCC-CceeHHH
Confidence 3456677888889988888 778999999999999999999998643221 016899987 6799999
Q ss_pred HHHHHHHH---hCCCccceeecCCC-CCCCCcccccHHHHHHhcCCCccc---CHHHHHHHHHHHHHHHc
Q 011841 388 LVSILENL---LNTKAKKHVIRMPR-NGDVPYTHANVSLAYKDFGYKPTT---DLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 388 l~~~l~~~---~g~~~~~~~~~~~~-~~~~~~~~~d~~ka~~~LG~~p~~---~l~e~l~~~v~~~~~~~ 450 (476)
+++++.+. +|.+..+...+.+. ..+......|.+|+++ |||+|++ +++++|.+++.||+++-
T Consensus 349 l~~~i~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~-LGw~p~~~~~~l~~~l~~~~~~~~~~~ 417 (442)
T PLN02572 349 LAKLVTKAGEKLGLDVEVISVPNPRVEAEEHYYNAKHTKLCE-LGLEPHLLSDSLLDSLLNFAVKYKDRV 417 (442)
T ss_pred HHHHHHHHHHhhCCCCCeeeCCCCcccccccccCccHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHhhc
Confidence 99999999 88776665555442 2344566789999975 9999999 89999999999998654
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=358.57 Aligned_cols=313 Identities=24% Similarity=0.377 Sum_probs=252.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|||||||||||++++++|+++|++|+++.+....... ..... ......+++++.+|++|.+.+.+++++.++|+||
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGN-LMSLA-PVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccc-hhhhh-hcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 689999999999999999999999886554432221111 11111 1112236888999999999999999976789999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCccccCCCC--CCCCCCCCCCCCCC
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV---------NPQPSIVWASSSSVYGLNT--QVPFSESHRTDQPA 267 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~---------~~~~~~V~~SS~~vyg~~~--~~~~~E~~~~~~p~ 267 (476)
|+||........+++..++++|+.|+.+++++|++. +++ +||++||.++||... ..+++|+++. .|.
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~~~E~~~~-~p~ 157 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAF-RFHHISTDEVYGDLHSTDDFFTETTPY-APS 157 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCce-EEEEecchhhcCCCCCCCCCcCCCCCC-CCC
Confidence 999986655555678899999999999999999863 343 899999999998542 3367787765 688
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHH
Q 011841 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (476)
+.|+.+|.++|.+++.++++++++++++||++||||+..+..++..++..+..++++.++ +++++.++|+|++|+|+
T Consensus 158 s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~D~a~ 234 (355)
T PRK10217 158 SPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVY---GNGQQIRDWLYVEDHAR 234 (355)
T ss_pred ChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCcccHHHHHHHHHhcCCCceEe---CCCCeeeCcCcHHHHHH
Confidence 999999999999999999889999999999999999876666777788888888888888 77899999999999999
Q ss_pred HHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcccee-----------ecCCCCCCCCcc
Q 011841 348 GCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV-----------IRMPRNGDVPYT 416 (476)
Q Consensus 348 a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~-----------~~~~~~~~~~~~ 416 (476)
+++.+++... .+ ++|||++++++++.|+++.+.+.+|....... .......+...+
T Consensus 235 a~~~~~~~~~-~~------------~~yni~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
T PRK10217 235 ALYCVATTGK-VG------------ETYNIGGHNERKNLDVVETICELLEELAPNKPQGVAHYRDLITFVADRPGHDLRY 301 (355)
T ss_pred HHHHHHhcCC-CC------------CeEEeCCCCcccHHHHHHHHHHHhcccccccccccccccccceecCCCCCCCccc
Confidence 9999997633 22 89999999999999999999999985321110 011123345567
Q ss_pred cccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 417 HANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 417 ~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
.+|++|++++|||+|+++++|+|+++++||+.+.+
T Consensus 302 ~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 302 AIDASKIARELGWLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred ccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHhCHH
Confidence 89999999999999999999999999999998755
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=361.53 Aligned_cols=315 Identities=20% Similarity=0.320 Sum_probs=245.4
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhcc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
+.+.|+|||||||||||++|+++|+++ |++|++++|..... ....... ....+++++.+|+.|.+.+.+++++
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~----~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 86 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKI----KHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKM 86 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhh----hhhhccccccCCCCeEEEEcCCCChHHHHHHhhc
Confidence 356689999999999999999999998 59999999854311 1110000 0123799999999999999999987
Q ss_pred CCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCC--------
Q 011841 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT-------- 263 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~-------- 263 (476)
+ |+|||+|+.........++...+..|+.++.+|+++|++.+ + +|||+||.++||.....+..|+.+.
T Consensus 87 ~--d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~-r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~ 162 (386)
T PLN02427 87 A--DLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-K-RLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYV 162 (386)
T ss_pred C--CEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-C-EEEEEeeeeeeCCCcCCCCCccccccccccccc
Confidence 6 99999999765433345666777899999999999999887 4 9999999999996533333332211
Q ss_pred -------------CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC-----------CCcHHHHHHHHH
Q 011841 264 -------------DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP-----------DMAYFFFTKDIL 319 (476)
Q Consensus 264 -------------~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~-----------~~~~~~~~~~~~ 319 (476)
..+.+.|+.+|.++|.+++.+.+.+|++++++||++||||+... ..++..+...+.
T Consensus 163 ~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~i~~~~~~~~ 242 (386)
T PLN02427 163 LKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIPGIDGPSEGVPRVLACFSNNLL 242 (386)
T ss_pred ccccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccccccccccccchHHHHHHHHHh
Confidence 12446899999999999999988889999999999999997431 123455667788
Q ss_pred cCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCC-CcccHHHHHHHHHHHhCC
Q 011841 320 QGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNT-SPVPVGRLVSILENLLNT 398 (476)
Q Consensus 320 ~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~-~~vt~~el~~~l~~~~g~ 398 (476)
+++++.++ +++++.++|+||+|+|++++.+++++....| ++||++++ +.+++.|+++.+.+.+|.
T Consensus 243 ~~~~~~~~---g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g-----------~~yni~~~~~~~s~~el~~~i~~~~g~ 308 (386)
T PLN02427 243 RREPLKLV---DGGQSQRTFVYIKDAIEAVLLMIENPARANG-----------HIFNVGNPNNEVTVRQLAEMMTEVYAK 308 (386)
T ss_pred cCCCeEEE---CCCCceECcEeHHHHHHHHHHHHhCcccccC-----------ceEEeCCCCCCccHHHHHHHHHHHhcc
Confidence 89998888 6788899999999999999999987642222 79999997 599999999999999985
Q ss_pred Ccc-----ceeecCC-------CCCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 399 KAK-----KHVIRMP-------RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 399 ~~~-----~~~~~~~-------~~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
... ......+ ...+......|.+|++++|||+|+++++++|+++++||++.|-
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~~ 373 (386)
T PLN02427 309 VSGEPALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTYA 373 (386)
T ss_pred ccccccccccccccCcccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHHH
Confidence 211 1111111 1134556678999999999999999999999999999999874
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=351.75 Aligned_cols=307 Identities=22% Similarity=0.359 Sum_probs=248.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC-CHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN-DAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~l~~~~~~~~~d~ 196 (476)
|+||||||+||||++|+++|+++ |++|++++|... . ........+++++.+|+. |.+.+.++++++ |+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~-------~-~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~--d~ 71 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD-------R-LGDLVNHPRMHFFEGDITINKEWIEYHVKKC--DV 71 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH-------H-HHHhccCCCeEEEeCCCCCCHHHHHHHHcCC--CE
Confidence 68999999999999999999987 799999998321 1 112223357999999998 778888888865 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCC------CCCCChH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPASLY 270 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~------~~p~~~Y 270 (476)
|||+|+.........++...+++|+.++.+|+++|++.+ + +|||+||..+||.....+++|++++ ..|.+.|
T Consensus 72 ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~-~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y 149 (347)
T PRK11908 72 ILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIY 149 (347)
T ss_pred EEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-C-eEEEEecceeeccCCCcCcCccccccccCcCCCccchH
Confidence 999999866555567888999999999999999999887 4 9999999999997655567777542 2466789
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC--------CCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
+.+|.++|++++.+...++++++++||+.+|||+..+ ..++..++..+..++++.+. +++++.++|+|+
T Consensus 150 ~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~~g~~~r~~i~v 226 (347)
T PRK11908 150 ACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGEPISLV---DGGSQKRAFTDI 226 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCCccccCCcchHHHHHHHHhCCCceEEe---cCCceeeccccH
Confidence 9999999999999998889999999999999997432 23567888889999998877 668899999999
Q ss_pred HHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC-CcccHHHHHHHHHHHhCCCccce-------eecCC-----
Q 011841 343 DDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT-SPVPVGRLVSILENLLNTKAKKH-------VIRMP----- 408 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~-~~vt~~el~~~l~~~~g~~~~~~-------~~~~~----- 408 (476)
+|++++++.+++++.. ..| ++|||+++ ..+|+.|+++.+.+.+|..+... ....+
T Consensus 227 ~D~a~a~~~~~~~~~~~~~g-----------~~yni~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (347)
T PRK11908 227 DDGIDALMKIIENKDGVASG-----------KIYNIGNPKNNHSVRELANKMLELAAEYPEYAESAKKVKLVETTSGAYY 295 (347)
T ss_pred HHHHHHHHHHHhCccccCCC-----------CeEEeCCCCCCcCHHHHHHHHHHHhcCcccccccccccccccCCchhcc
Confidence 9999999999987542 222 89999997 58999999999999999644321 11111
Q ss_pred --CCCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 409 --RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 409 --~~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
...+......|++|++++|||+|+++++++|+++++|++++..
T Consensus 296 ~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~~ 340 (347)
T PRK11908 296 GKGYQDVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHVA 340 (347)
T ss_pred CcCcchhccccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1123345567899999999999999999999999999987653
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=349.51 Aligned_cols=318 Identities=22% Similarity=0.239 Sum_probs=256.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCC-chHHHHHH-hhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD-PSLKRARQ-KLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~-~~~~~~~~-~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.++|+||||||+||||++|+++|+++|++|++++|...... ........ ......++.++.+|++|.+++.++++..+
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 83 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK 83 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence 35689999999999999999999999999999998654321 11111111 01112368899999999999999999878
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC----CeEEEecCccccCCCCCCCCCCCCCCCCCCCh
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ----PSIVWASSSSVYGLNTQVPFSESHRTDQPASL 269 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~----~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~ 269 (476)
+|+|||+|+.........++...+++|+.|+.+|+++|++.+.+ .+||++||.++||.... +++|+++. .|.+.
T Consensus 84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~~~~-~p~~~ 161 (340)
T PLN02653 84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSETTPF-HPRSP 161 (340)
T ss_pred CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCCCCC-CCCCh
Confidence 89999999986655556677888899999999999999988864 28999999999997665 78888766 78899
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCc---HHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHH
Q 011841 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346 (476)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (476)
|+.+|.++|.+++.+++++++.++..|+.++|||+...+.. +..++..+..++++.++. +++++.++|+|++|+|
T Consensus 162 Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~g~~~rd~i~v~D~a 239 (340)
T PLN02653 162 YAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRAVGRIKVGLQKKLFL--GNLDASRDWGFAGDYV 239 (340)
T ss_pred hHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcccchhHHHHHHHHHHcCCCCceEe--CCCcceecceeHHHHH
Confidence 99999999999999999999999999999999997544322 334455666777665432 6788999999999999
Q ss_pred HHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCc--cceeecC-CCCCCCCcccccHHHH
Q 011841 347 KGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA--KKHVIRM-PRNGDVPYTHANVSLA 423 (476)
Q Consensus 347 ~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~--~~~~~~~-~~~~~~~~~~~d~~ka 423 (476)
++++.++++.. . ++||+++++++++.|+++.+.+.+|.+. .....+. ....+......|++|+
T Consensus 240 ~a~~~~~~~~~--~------------~~yni~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 305 (340)
T PLN02653 240 EAMWLMLQQEK--P------------DDYVVATEESHTVEEFLEEAFGYVGLNWKDHVEIDPRYFRPAEVDNLKGDASKA 305 (340)
T ss_pred HHHHHHHhcCC--C------------CcEEecCCCceeHHHHHHHHHHHcCCCCCcceeeCcccCCccccccccCCHHHH
Confidence 99999998642 2 7899999999999999999999999642 2222221 1345666778899999
Q ss_pred HHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 424 YKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 424 ~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
+++|||+|+++++|+|+++++||++.-.
T Consensus 306 ~~~lgw~p~~~l~~gi~~~~~~~~~~~~ 333 (340)
T PLN02653 306 REVLGWKPKVGFEQLVKMMVDEDLELAK 333 (340)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999986654
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=348.41 Aligned_cols=321 Identities=21% Similarity=0.236 Sum_probs=255.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++|+||||||+||||+++++.|+++|++|++++|........... ......+.++.+|++|.+.+.++++..++|+
T Consensus 3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~ 78 (349)
T TIGR02622 3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFEL----LNLAKKIEDHFGDIRDAAKLRKAIAEFKPEI 78 (349)
T ss_pred CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHH----HhhcCCceEEEccCCCHHHHHHHHhhcCCCE
Confidence 468999999999999999999999999999999876532211111 1112367789999999999999999888999
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCC-CCCCCCCCCCCCCChHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ-VPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~-~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
|||+||.........++...+++|+.++.+++++|++.+..++||++||..+||.... .+++|+++. .|.++|+.+|.
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~-~p~~~Y~~sK~ 157 (349)
T TIGR02622 79 VFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPL-GGHDPYSSSKA 157 (349)
T ss_pred EEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCC-CCCCcchhHHH
Confidence 9999997655556678889999999999999999988762249999999999986532 356777665 68899999999
Q ss_pred HHHHHHHHHHHHh-------CCcEEEEeeCcccCCCCC-CCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHH
Q 011841 276 AGEEIAHTYNHIY-------GLALTGLRFFTVYGPWGR-PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (476)
Q Consensus 276 ~~E~~~~~~~~~~-------gi~~~ilRp~~v~G~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (476)
++|.+++.+++++ +++++++||++||||+.. ...+++.+++.+..|+++.+. ++++.++|+|++|+|+
T Consensus 158 ~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~~~~~~~~~~g~~~~~~----~g~~~rd~i~v~D~a~ 233 (349)
T TIGR02622 158 CAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLIPDVIRAFSSNKIVIIR----NPDATRPWQHVLEPLS 233 (349)
T ss_pred HHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhhHHHHHHHhcCCCeEEC----CCCcccceeeHHHHHH
Confidence 9999999988765 899999999999999753 345678888989999887654 5789999999999999
Q ss_pred HHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCC--CcccHHHHHHHHHHHhCC-CccceeecC-CCCCCCCcccccHHHH
Q 011841 348 GCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNT--SPVPVGRLVSILENLLNT-KAKKHVIRM-PRNGDVPYTHANVSLA 423 (476)
Q Consensus 348 a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~--~~vt~~el~~~l~~~~g~-~~~~~~~~~-~~~~~~~~~~~d~~ka 423 (476)
+++.+++....... ...++|||+++ ++++..++++.+.+.++. +..+...+. ....+.....+|++|+
T Consensus 234 a~~~~~~~~~~~~~--------~~~~~yni~s~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~ 305 (349)
T TIGR02622 234 GYLLLAEKLFTGQA--------EFAGAWNFGPRASDNARVVELVVDALEFWWGDDAEWEDDSDLNHPHEARLLKLDSSKA 305 (349)
T ss_pred HHHHHHHHHhhcCc--------cccceeeeCCCcccCcCHHHHHHHHHHHhcCCCCceeeccCCCCCcccceeecCHHHH
Confidence 99998875321100 00179999974 799999999999987763 222222111 1234455677899999
Q ss_pred HHhcCCCcccCHHHHHHHHHHHHHHHcCCCC
Q 011841 424 YKDFGYKPTTDLAAGLRKFVKWYVSYYGIQP 454 (476)
Q Consensus 424 ~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~~ 454 (476)
+++|||+|+++++++|+++++|++++.+...
T Consensus 306 ~~~lgw~p~~~l~~gi~~~i~w~~~~~~~~~ 336 (349)
T TIGR02622 306 RTLLGWHPRWGLEEAVSRTVDWYKAWLRGED 336 (349)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999876543
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=339.69 Aligned_cols=313 Identities=26% Similarity=0.413 Sum_probs=255.7
Q ss_pred EEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+||||||||+||++++++|+++| ++|++++|....... . .........+++++.+|+.|++++.+++++.++|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNL--E-NLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhh--h-hhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 58999999999999999999987 789998874321111 1 111112234788999999999999999998677999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCC-CCCCCCCCCCCCChHHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQV-PFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~-~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
||+|+....+...++++.++++|+.++.+++++|++.+.+.++|++||.++||..... +++|+++. .|.+.|+.+|..
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~-~~~~~Y~~sK~~ 156 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPL-APSSPYSASKAA 156 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCC-CCCCchHHHHHH
Confidence 9999986655566778889999999999999999987654589999999999975443 57777765 678899999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
+|.+++.+..+.+++++++||+.+|||+..+..++..++..+..++++.++ +++++.++|+|++|+|+++..++++.
T Consensus 157 ~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~D~a~~~~~~~~~~ 233 (317)
T TIGR01181 157 SDHLVRAYHRTYGLPALITRCSNNYGPYQFPEKLIPLMITNALAGKPLPVY---GDGQQVRDWLYVEDHCRAIYLVLEKG 233 (317)
T ss_pred HHHHHHHHHHHhCCCeEEEEeccccCCCCCcccHHHHHHHHHhcCCCceEe---CCCceEEeeEEHHHHHHHHHHHHcCC
Confidence 999999998888999999999999999876666778888889999888887 67888999999999999999999764
Q ss_pred CcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCcccCHH
Q 011841 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLA 436 (476)
Q Consensus 357 ~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~ 436 (476)
.. + ++||+++++++++.|+++.+.+.+|.+............+......|++|++++|||+|+++++
T Consensus 234 ~~-~------------~~~~~~~~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~lG~~p~~~~~ 300 (317)
T TIGR01181 234 RV-G------------ETYNIGGGNERTNLEVVETILELLGKDEDLITHVEDRPGHDRRYAIDASKIKRELGWAPKYTFE 300 (317)
T ss_pred CC-C------------ceEEeCCCCceeHHHHHHHHHHHhCCCcccccccCCCccchhhhcCCHHHHHHHhCCCCCCcHH
Confidence 32 1 7999999999999999999999999754332221112233334468999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 011841 437 AGLRKFVKWYVSYYGI 452 (476)
Q Consensus 437 e~l~~~v~~~~~~~~~ 452 (476)
++|+++++||+++...
T Consensus 301 ~~i~~~~~~~~~~~~~ 316 (317)
T TIGR01181 301 EGLRKTVQWYLDNEWW 316 (317)
T ss_pred HHHHHHHHHHHhccCC
Confidence 9999999999877653
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-42 Score=372.79 Aligned_cols=312 Identities=21% Similarity=0.328 Sum_probs=254.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH-HHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL-LTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-l~~~~~~~~ 193 (476)
..+|+||||||+||||++|+++|+++ ||+|++++|..... .......+++++.+|++|.+. +.++++++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~--------~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~- 383 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAI--------SRFLGHPRFHFVEGDISIHSEWIEYHIKKC- 383 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhh--------hhhcCCCceEEEeccccCcHHHHHHHhcCC-
Confidence 35789999999999999999999986 79999999854311 112223478999999998654 67778765
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCC------CCCC
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPA 267 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~------~~p~ 267 (476)
|+|||+||...+.....++...+++|+.++.+++++|++.+ + +|||+||.++||.....+++|+++. ..|.
T Consensus 384 -D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~ 460 (660)
T PRK08125 384 -DVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQR 460 (660)
T ss_pred -CEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchhhcCCCCCCCcCccccccccCCCCCCc
Confidence 99999999876655566788899999999999999999987 4 9999999999997655678887642 1355
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC--------CCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
+.|+.+|.++|.+++.+.+.+|++++++||++||||+... ...+..++..+..++++.++ +++++.++|
T Consensus 461 s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~i~~~i~~~~~~~~i~~~---g~g~~~rd~ 537 (660)
T PRK08125 461 WIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLV---DGGKQKRCF 537 (660)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccccccccccchHHHHHHHhcCCCCeEEe---CCCceeece
Confidence 7899999999999999998889999999999999997532 34577888888889998888 678999999
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC-cccHHHHHHHHHHHhCCCccceeecCC---------
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS-PVPVGRLVSILENLLNTKAKKHVIRMP--------- 408 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~-~vt~~el~~~l~~~~g~~~~~~~~~~~--------- 408 (476)
+|++|+|++++.+++++.. ..| ++||+++++ .+++.|+++.+.+.+|.+......+..
T Consensus 538 i~v~Dva~a~~~~l~~~~~~~~g-----------~iyni~~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 606 (660)
T PRK08125 538 TDIRDGIEALFRIIENKDNRCDG-----------QIINIGNPDNEASIRELAEMLLASFEKHPLRDHFPPFAGFRVVESS 606 (660)
T ss_pred eeHHHHHHHHHHHHhccccccCC-----------eEEEcCCCCCceeHHHHHHHHHHHhccCcccccCCccccccccccc
Confidence 9999999999999987532 112 899999985 799999999999999964322112111
Q ss_pred -----CCCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCCC
Q 011841 409 -----RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 409 -----~~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 453 (476)
...+.....+|++|++++|||+|+++++|+|+++++||+++++..
T Consensus 607 ~~~~~~~~~~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~~~ 656 (660)
T PRK08125 607 SYYGKGYQDVEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVDLT 656 (660)
T ss_pred cccccccccccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhccccc
Confidence 012445567899999999999999999999999999999888754
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=342.30 Aligned_cols=312 Identities=24% Similarity=0.420 Sum_probs=247.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
|+||||||+||||++|+++|+++|++ |+++++...... ..... ......+++++.+|++|.+++.++++..++|+|
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGN--LESLA-DVSDSERYVFEHADICDRAELDRIFAQHQPDAV 77 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccch--HHHHH-hcccCCceEEEEecCCCHHHHHHHHHhcCCCEE
Confidence 58999999999999999999999976 555554321111 11111 111134678899999999999999987678999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCccccCCCC---------C-CCCC
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV---------NPQPSIVWASSSSVYGLNT---------Q-VPFS 258 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~---------~~~~~~V~~SS~~vyg~~~---------~-~~~~ 258 (476)
||+||.........+++.++++|+.|+.+++++|++. +.. +||++||.++||... . .+++
T Consensus 78 ih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~ 156 (352)
T PRK10084 78 MHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAF-RFHHISTDEVYGDLPHPDEVENSEELPLFT 156 (352)
T ss_pred EECCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccce-eEEEecchhhcCCCCccccccccccCCCcc
Confidence 9999986544444667889999999999999999874 333 899999999998631 1 2356
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
|+++. .|.+.|+.+|.++|.+++.+++++|++++++|++.||||+.....++..++..+..++++.++ +++++.++
T Consensus 157 E~~~~-~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~ 232 (352)
T PRK10084 157 ETTAY-APSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRD 232 (352)
T ss_pred ccCCC-CCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCccchHHHHHHHHhcCCCeEEe---CCCCeEEe
Confidence 77665 788999999999999999999889999999999999999865555677777888888888887 67889999
Q ss_pred ceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcccee-------ecCCCCC
Q 011841 339 FTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV-------IRMPRNG 411 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~-------~~~~~~~ 411 (476)
|+|++|+|++++.++++.. .+ ++||+++++++++.++++.+.+.+|...+... .......
T Consensus 233 ~v~v~D~a~a~~~~l~~~~-~~------------~~yni~~~~~~s~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~ 299 (352)
T PRK10084 233 WLYVEDHARALYKVVTEGK-AG------------ETYNIGGHNEKKNLDVVLTICDLLDEIVPKATSYREQITYVADRPG 299 (352)
T ss_pred eEEHHHHHHHHHHHHhcCC-CC------------ceEEeCCCCcCcHHHHHHHHHHHhccccccccchhhhccccccCCC
Confidence 9999999999999987532 22 89999999999999999999999986322110 0011123
Q ss_pred CCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 412 DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 412 ~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
+...+.+|++|++++|||+|+++++++|+++++||+++..
T Consensus 300 ~~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 339 (352)
T PRK10084 300 HDRRYAIDASKISRELGWKPQETFESGIRKTVEWYLANTE 339 (352)
T ss_pred CCceeeeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhCHH
Confidence 3445678999999999999999999999999999988643
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-41 Score=339.89 Aligned_cols=325 Identities=27% Similarity=0.387 Sum_probs=252.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..+|+||||||+||||++|++.|+++|++|++++|..........+..... ....++.++.+|++|++.+.++++..++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 456899999999999999999999999999999875432221111111111 1124688999999999999999987778
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (476)
|+|||+|+.........++...++.|+.++.+++++|++.+++ +||++||+++||.....+++|+++. .|.+.|+.+|
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~vyg~~~~~~~~E~~~~-~~~~~Y~~sK 160 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSSSATVYGQPEEVPCTEEFPL-SATNPYGRTK 160 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCCCCCCCCCCCC-CCCCHHHHHH
Confidence 9999999975444445677889999999999999999998876 9999999999987666688888776 7789999999
Q ss_pred HHHHHHHHHHHHH-hCCcEEEEeeCcccCCCCC------CC---CcHHHHHHHHHcCC--ceEEEee---CCCCceeEec
Q 011841 275 KAGEEIAHTYNHI-YGLALTGLRFFTVYGPWGR------PD---MAYFFFTKDILQGK--TIDVYKT---QDDREVARDF 339 (476)
Q Consensus 275 ~~~E~~~~~~~~~-~gi~~~ilRp~~v~G~~~~------~~---~~~~~~~~~~~~g~--~~~~~~~---~~~~~~~~~~ 339 (476)
.++|.+++.+.+. .+++++++|++++||++.. +. ..+..++..+..++ .+.+++. .+++.+.++|
T Consensus 161 ~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 240 (352)
T PLN02240 161 LFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGRIGEDPKGIPNNLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDY 240 (352)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeecCcCCCCccccccCCCCCCcchHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEee
Confidence 9999999998754 5799999999999997421 11 11223455555554 3445420 1257899999
Q ss_pred eeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCccccc
Q 011841 340 TYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHAN 419 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d 419 (476)
+|++|+|++++.++++.......++ ++||+++++++|+.|+++.+.+.+|.+..+...+ +...+......|
T Consensus 241 i~v~D~a~a~~~a~~~~~~~~~~~~--------~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~d 311 (352)
T PLN02240 241 IHVMDLADGHIAALRKLFTDPDIGC--------EAYNLGTGKGTSVLEMVAAFEKASGKKIPLKLAP-RRPGDAEEVYAS 311 (352)
T ss_pred EEHHHHHHHHHHHHhhhhhccCCCC--------ceEEccCCCcEeHHHHHHHHHHHhCCCCCceeCC-CCCCChhhhhcC
Confidence 9999999999998875411110111 8999999999999999999999999876655444 233444556689
Q ss_pred HHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 420 VSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 420 ~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
++|++++|||+|+++++|+|+++++|++++..
T Consensus 312 ~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~ 343 (352)
T PLN02240 312 TEKAEKELGWKAKYGIDEMCRDQWNWASKNPY 343 (352)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999988753
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=319.67 Aligned_cols=307 Identities=25% Similarity=0.422 Sum_probs=266.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+++|+||||.||||+||++.|..+||+|+++|...... +.........+.++++.-|+..+ ++.++ |
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~----k~n~~~~~~~~~fel~~hdv~~p-----l~~ev--D 93 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGR----KENLEHWIGHPNFELIRHDVVEP-----LLKEV--D 93 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccc----hhhcchhccCcceeEEEeechhH-----HHHHh--h
Confidence 4568999999999999999999999999999999865432 22222334456888888888664 77777 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCC----CCCCCChHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR----TDQPASLYA 271 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~----~~~p~~~Y~ 271 (476)
.|+|+|+.+++..-..+|-.++..|+.++.+++-.|++.+. ||+++||+.|||.....|..|+.+ +..|.+.|.
T Consensus 94 ~IyhLAapasp~~y~~npvktIktN~igtln~lglakrv~a--R~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cyd 171 (350)
T KOG1429|consen 94 QIYHLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYD 171 (350)
T ss_pred hhhhhccCCCCcccccCccceeeecchhhHHHHHHHHHhCc--eEEEeecccccCCcccCCCccccccccCcCCchhhhh
Confidence 99999999887666778888999999999999999999983 999999999999987777777653 347889999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC--CCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
..|..+|.++..|.++.|+.+.|.|+++.|||... +...+..|..+.+++.++.++ |+|.|.++|.||+|+++++
T Consensus 172 egKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~dgrvvsnf~~q~lr~epltv~---g~G~qtRSF~yvsD~Vegl 248 (350)
T KOG1429|consen 172 EGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMDDGRVVSNFIAQALRGEPLTVY---GDGKQTRSFQYVSDLVEGL 248 (350)
T ss_pred HHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccCCChhhHHHHHHHhcCCCeEEE---cCCcceEEEEeHHHHHHHH
Confidence 99999999999999999999999999999999753 345778899999999999999 8999999999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCC
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGY 429 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~ 429 (476)
+++++++.. +-+||+++..+|+.||++++.++.+-...+.... +..+|+.....|+++|+++|||
T Consensus 249 l~Lm~s~~~--------------~pvNiGnp~e~Tm~elAemv~~~~~~~s~i~~~~-~~~Ddp~kR~pDit~ake~LgW 313 (350)
T KOG1429|consen 249 LRLMESDYR--------------GPVNIGNPGEFTMLELAEMVKELIGPVSEIEFVE-NGPDDPRKRKPDITKAKEQLGW 313 (350)
T ss_pred HHHhcCCCc--------------CCcccCCccceeHHHHHHHHHHHcCCCcceeecC-CCCCCccccCccHHHHHHHhCC
Confidence 999999876 4599999999999999999999997666665554 4457777888999999999999
Q ss_pred CcccCHHHHHHHHHHHHHHHcCCC
Q 011841 430 KPTTDLAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 430 ~p~~~l~e~l~~~v~~~~~~~~~~ 453 (476)
.|+++|+|+|..++.|+++.+...
T Consensus 314 ~Pkv~L~egL~~t~~~fr~~i~~~ 337 (350)
T KOG1429|consen 314 EPKVSLREGLPLTVTYFRERIARE 337 (350)
T ss_pred CCCCcHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999987654
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=344.11 Aligned_cols=306 Identities=25% Similarity=0.344 Sum_probs=247.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+|+|||||||||||++|++.|+++||+|++++|....... . ....++++.+|++|.+.+.++++++ |
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~-------~--~~~~~~~~~~Dl~d~~~~~~~~~~~--D 87 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMS-------E--DMFCHEFHLVDLRVMENCLKVTKGV--D 87 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccc-------c--ccccceEEECCCCCHHHHHHHHhCC--C
Confidence 367899999999999999999999999999999985321100 0 0113678899999999988888765 9
Q ss_pred EEEEccccCCh-hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCC----CCCCCCCC-CCCCCCh
Q 011841 196 HVLHLAAQAGV-RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ----VPFSESHR-TDQPASL 269 (476)
Q Consensus 196 ~Vi~~Ag~~~~-~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~----~~~~E~~~-~~~p~~~ 269 (476)
+|||+|+.... .....++...+..|+.++.+|+++|++.+++ +|||+||.++||.... .++.|++. +..|.+.
T Consensus 88 ~Vih~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk-~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~ 166 (370)
T PLN02695 88 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVK-RFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDA 166 (370)
T ss_pred EEEEcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCC-EEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCH
Confidence 99999987532 2223455667788999999999999999986 9999999999986532 24666652 3478899
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC----CCcHHHHHHHHHc-CCceEEEeeCCCCceeEeceeHHH
Q 011841 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQ-GKTIDVYKTQDDREVARDFTYIDD 344 (476)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~v~v~D 344 (476)
|+.+|.++|.+++.+.+.+|++++++||++||||+... ......|+..+.. +.++.++ +++++.++|+|++|
T Consensus 167 Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---g~g~~~r~~i~v~D 243 (370)
T PLN02695 167 YGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDEFEMW---GDGKQTRSFTFIDE 243 (370)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCccccccccHHHHHHHHHcCCCCeEEe---CCCCeEEeEEeHHH
Confidence 99999999999999998889999999999999997532 2345567766665 4777787 77899999999999
Q ss_pred HHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHH
Q 011841 345 VVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAY 424 (476)
Q Consensus 345 va~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~ 424 (476)
++++++.++++.. . ++||+++++.+++.|+++.+.+.+|.+.++...+.+. .......|++|++
T Consensus 244 ~a~ai~~~~~~~~--~------------~~~nv~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~--~~~~~~~d~sk~~ 307 (370)
T PLN02695 244 CVEGVLRLTKSDF--R------------EPVNIGSDEMVSMNEMAEIALSFENKKLPIKHIPGPE--GVRGRNSDNTLIK 307 (370)
T ss_pred HHHHHHHHHhccC--C------------CceEecCCCceeHHHHHHHHHHHhCCCCCceecCCCC--CccccccCHHHHH
Confidence 9999999877532 2 7899999999999999999999999876655544332 2234468999999
Q ss_pred HhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 425 KDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 425 ~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
++|||+|+++++++|+++++||++....
T Consensus 308 ~~lgw~p~~~l~e~i~~~~~~~~~~~~~ 335 (370)
T PLN02695 308 EKLGWAPTMRLKDGLRITYFWIKEQIEK 335 (370)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999987653
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=365.02 Aligned_cols=315 Identities=26% Similarity=0.357 Sum_probs=254.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.+.|+||||||+||||++|+++|+++ |++|++++|... ........ ......+++++.+|++|.+.+.+++...+
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~--~~~~~~l~-~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~ 80 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDY--CSNLKNLN-PSKSSPNFKFVKGDIASADLVNYLLITEG 80 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCc--cchhhhhh-hcccCCCeEEEECCCCChHHHHHHHhhcC
Confidence 35689999999999999999999998 689999987421 01111111 11123579999999999999888876557
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCC---CCCCCCCCCCCChH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVP---FSESHRTDQPASLY 270 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~---~~E~~~~~~p~~~Y 270 (476)
+|+|||+|+....+....++..++++|+.++.+|+++|++.+..++|||+||..+||.....+ ..|+++. .|.+.|
T Consensus 81 ~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~-~p~~~Y 159 (668)
T PLN02260 81 IDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQL-LPTNPY 159 (668)
T ss_pred CCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCC-CCCCCc
Confidence 799999999876655556778889999999999999999987324999999999999765432 2455554 678899
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHH
Q 011841 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350 (476)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~ 350 (476)
+.+|.++|.+++.+.++++++++++||++||||+.....++..++..+..++++.++ +++++.++|+|++|+|++++
T Consensus 160 ~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~~~~i~~~~~~a~~g~~i~i~---g~g~~~r~~ihV~Dva~a~~ 236 (668)
T PLN02260 160 SATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKPLPIH---GDGSNVRSYLYCEDVAEAFE 236 (668)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCcccHHHHHHHHHhCCCCeEEe---cCCCceEeeEEHHHHHHHHH
Confidence 999999999999999888999999999999999876666777888888899999888 77889999999999999999
Q ss_pred HHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeec-CCCCCCCCcccccHHHHHHhcCC
Q 011841 351 GALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR-MPRNGDVPYTHANVSLAYKDFGY 429 (476)
Q Consensus 351 ~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~-~~~~~~~~~~~~d~~ka~~~LG~ 429 (476)
.++++... + ++||+++++.+++.|+++.+.+.+|.+....... ..+..+.....+|++|++ +|||
T Consensus 237 ~~l~~~~~-~------------~vyni~~~~~~s~~el~~~i~~~~g~~~~~~i~~~~~~p~~~~~~~~d~~k~~-~lGw 302 (668)
T PLN02260 237 VVLHKGEV-G------------HVYNIGTKKERRVIDVAKDICKLFGLDPEKSIKFVENRPFNDQRYFLDDQKLK-KLGW 302 (668)
T ss_pred HHHhcCCC-C------------CEEEECCCCeeEHHHHHHHHHHHhCCCCcceeeecCCCCCCcceeecCHHHHH-HcCC
Confidence 99875432 1 8999999999999999999999999765432211 112233345568999997 6999
Q ss_pred CcccCHHHHHHHHHHHHHHHcC
Q 011841 430 KPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 430 ~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
+|+++++|+|+++++||+++..
T Consensus 303 ~p~~~~~egl~~~i~w~~~~~~ 324 (668)
T PLN02260 303 QERTSWEEGLKKTMEWYTSNPD 324 (668)
T ss_pred CCCCCHHHHHHHHHHHHHhChh
Confidence 9999999999999999998754
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=315.56 Aligned_cols=311 Identities=26% Similarity=0.404 Sum_probs=263.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++|+||||.||||++.+..+... .+..+.++.-.=- .. ..........++..++++|+.|...+..+|...++|.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~--s~-~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~ 83 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYC--SN-LKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDT 83 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccc--cc-cchhhhhccCCCceEeeccccchHHHHhhhccCchhh
Confidence 89999999999999999999987 4555555531110 01 1122233346789999999999999999999989999
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCC-CCCCCCCCCChHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFS-ESHRTDQPASLYAATKK 275 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~-E~~~~~~p~~~Y~~sK~ 275 (476)
|||.|+...++.+..++-+....|+.++..|+++++..|..++|||+||..|||.+.+.... |.+.+ +|.++|+++|+
T Consensus 84 vihfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~-nPtnpyAasKa 162 (331)
T KOG0747|consen 84 VIHFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLL-NPTNPYAASKA 162 (331)
T ss_pred hhhhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccC-CCCCchHHHHH
Confidence 99999999998888899999999999999999999998655699999999999999887776 66655 99999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
++|..+++|.+++|++++++|.++||||++.+...++.|+.....+++.++. |+|.+.++|+|++|+++++..+++.
T Consensus 163 AaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~klipkFi~l~~~~~~~~i~---g~g~~~rs~l~veD~~ea~~~v~~K 239 (331)
T KOG0747|consen 163 AAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPEKLIPKFIKLAMRGKEYPIH---GDGLQTRSYLYVEDVSEAFKAVLEK 239 (331)
T ss_pred HHHHHHHHHhhccCCcEEEEeccCccCCCcChHHHhHHHHHHHHhCCCccee---cCcccceeeEeHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999888999999989999999999 8899999999999999999999988
Q ss_pred cCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcc-ceeec-----CCCCCCCCcccccHHHHHHhcCC
Q 011841 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK-KHVIR-----MPRNGDVPYTHANVSLAYKDFGY 429 (476)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~-~~~~~-----~~~~~~~~~~~~d~~ka~~~LG~ 429 (476)
. ..+ ++|||+.+.+.+..|+++.+.+.++.... ....| ..++-....+.++.+|++ .|||
T Consensus 240 g-~~g------------eIYNIgtd~e~~~~~l~k~i~eli~~~~~~~~~~p~~~~v~dRp~nd~Ry~~~~eKik-~LGw 305 (331)
T KOG0747|consen 240 G-ELG------------EIYNIGTDDEMRVIDLAKDICELFEKRLPNIDTEPFIFFVEDRPYNDLRYFLDDEKIK-KLGW 305 (331)
T ss_pred C-Ccc------------ceeeccCcchhhHHHHHHHHHHHHHHhccCCCCCCcceecCCCCcccccccccHHHHH-hcCC
Confidence 3 322 99999999999999999999998876322 11111 112223345779999999 7999
Q ss_pred CcccCHHHHHHHHHHHHHHHc
Q 011841 430 KPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 430 ~p~~~l~e~l~~~v~~~~~~~ 450 (476)
+|++++++||+++++||.++.
T Consensus 306 ~~~~p~~eGLrktie~y~~~~ 326 (331)
T KOG0747|consen 306 RPTTPWEEGLRKTIEWYTKNF 326 (331)
T ss_pred cccCcHHHHHHHHHHHHHhhh
Confidence 999999999999999999887
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=333.41 Aligned_cols=318 Identities=26% Similarity=0.438 Sum_probs=248.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||++|++.|+++|++|++++|..+......... ......++.++.+|++|.+.+.++++..++|+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv 78 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVI--ERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI 78 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHH--HHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence 68999999999999999999999999999987543222111111 1112335788999999999999999876789999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+|+..........+...+++|+.++.+|+++|++.+++ +||++||.++||.....+++|+++...|.+.|+.+|.++|
T Consensus 79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 157 (338)
T PRK10675 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_pred ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHH
Confidence 999975543344566788999999999999999999886 9999999999997766788888876567899999999999
Q ss_pred HHHHHHHHHh-CCcEEEEeeCcccCCCCC------C----CCcHHHHHHHHHcCC--ceEEEe---eCCCCceeEeceeH
Q 011841 279 EIAHTYNHIY-GLALTGLRFFTVYGPWGR------P----DMAYFFFTKDILQGK--TIDVYK---TQDDREVARDFTYI 342 (476)
Q Consensus 279 ~~~~~~~~~~-gi~~~ilRp~~v~G~~~~------~----~~~~~~~~~~~~~g~--~~~~~~---~~~~~~~~~~~v~v 342 (476)
.+++++++.. +++++++|++.+||+... . ..+. .++..+..++ .+.++. ...++.+.++|+|+
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v 236 (338)
T PRK10675 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLM-PYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHV 236 (338)
T ss_pred HHHHHHHHhcCCCcEEEEEeeeecCCCcccccccCCCCChhHHH-HHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEH
Confidence 9999998764 799999999999997411 1 1122 3344455443 344542 00246789999999
Q ss_pred HHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHH
Q 011841 343 DDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSL 422 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 422 (476)
+|+|++++.+++...... ++ ++||+++++++|+.|+++.+.+.+|++......+ ....+......|++|
T Consensus 237 ~D~a~~~~~~~~~~~~~~--~~--------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~~~~~~~~~~~~~~k 305 (338)
T PRK10675 237 MDLADGHVAAMEKLANKP--GV--------HIYNLGAGVGSSVLDVVNAFSKACGKPVNYHFAP-RREGDLPAYWADASK 305 (338)
T ss_pred HHHHHHHHHHHHhhhccC--CC--------ceEEecCCCceeHHHHHHHHHHHhCCCCCeeeCC-CCCCchhhhhcCHHH
Confidence 999999999997632111 11 7999999999999999999999999876554433 233445667789999
Q ss_pred HHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 423 AYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 423 a~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
++++|||+|+++++++|+++++|+++++.
T Consensus 306 ~~~~lg~~p~~~~~~~~~~~~~~~~~~~~ 334 (338)
T PRK10675 306 ADRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_pred HHHHhCCCCcCcHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999988643
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=331.13 Aligned_cols=281 Identities=17% Similarity=0.174 Sum_probs=232.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||++|+++|+++| +|++++|.. ..+.+|++|.+.+.+++++.++|+||
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~--------------------~~~~~Dl~d~~~~~~~~~~~~~D~Vi 59 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHS--------------------TDYCGDFSNPEGVAETVRKIRPDVIV 59 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEecccc--------------------ccccCCCCCHHHHHHHHHhcCCCEEE
Confidence 689999999999999999999999 799998732 13468999999999999987889999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+|+...++.+..+++..+.+|+.++.+|+++|++.+. +|||+||..|||.....|++|+++. .|.+.|+.+|+++|
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~Ss~~Vy~~~~~~p~~E~~~~-~P~~~Yg~sK~~~E 136 (299)
T PRK09987 60 NAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYSTDYVFPGTGDIPWQETDAT-APLNVYGETKLAGE 136 (299)
T ss_pred ECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEccceEECCCCCCCcCCCCCC-CCCCHHHHHHHHHH
Confidence 99999887777788888999999999999999999985 7999999999998777789999876 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCC--CceeEeceeHHHHHHHHHHHHhhc
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDD--REVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
++++.+. .+.+++|+++||||+.. .++..+++.+.+++++.++ ++ +.+.+++.+++|+++++..+++.+
T Consensus 137 ~~~~~~~----~~~~ilR~~~vyGp~~~--~~~~~~~~~~~~~~~~~v~---~d~~g~~~~~~~~~d~~~~~~~~~~~~~ 207 (299)
T PRK09987 137 KALQEHC----AKHLIFRTSWVYAGKGN--NFAKTMLRLAKEREELSVI---NDQFGAPTGAELLADCTAHAIRVALNKP 207 (299)
T ss_pred HHHHHhC----CCEEEEecceecCCCCC--CHHHHHHHHHhcCCCeEEe---CCCcCCCCCHHHHHHHHHHHHHHhhccC
Confidence 9998754 45799999999999653 4567788888889899888 44 455556667788888888777543
Q ss_pred CcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhC---CCcc---ceeecC----CCCCCCCcccccHHHHHHh
Q 011841 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN---TKAK---KHVIRM----PRNGDVPYTHANVSLAYKD 426 (476)
Q Consensus 357 ~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g---~~~~---~~~~~~----~~~~~~~~~~~d~~ka~~~ 426 (476)
.. . ++||+++++.+|+.|+++.+.+.++ .+.. +...+. ....++.+..+|++|+++.
T Consensus 208 ~~-~------------giyni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~ 274 (299)
T PRK09987 208 EV-A------------GLYHLVASGTTTWHDYAALVFEEARKAGITLALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQN 274 (299)
T ss_pred CC-C------------CeEEeeCCCCccHHHHHHHHHHHHHhcCCCcCcCeeeecchhhcCCCCCCCCcccCCHHHHHHH
Confidence 22 1 7999999999999999999988644 3321 222221 1234677889999999999
Q ss_pred cCCCcccCHHHHHHHHHHHH
Q 011841 427 FGYKPTTDLAAGLRKFVKWY 446 (476)
Q Consensus 427 LG~~p~~~l~e~l~~~v~~~ 446 (476)
|||+|. +|+|+|+++++.+
T Consensus 275 lg~~~~-~~~~~l~~~~~~~ 293 (299)
T PRK09987 275 FALVLP-DWQVGVKRMLTEL 293 (299)
T ss_pred hCCCCc-cHHHHHHHHHHHH
Confidence 999986 9999999999865
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=328.94 Aligned_cols=307 Identities=18% Similarity=0.177 Sum_probs=233.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+|+||||||+||||++++++|+++|++|++++|+....... ...........+++++.+|++|.+.+.++++++ |+
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~--d~ 80 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKT-DHLLALDGAKERLKLFKADLLDEGSFELAIDGC--ET 80 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhH-HHHHhccCCCCceEEEeCCCCCchHHHHHHcCC--CE
Confidence 468999999999999999999999999999998865432211 111100011246889999999999999999865 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCCCC-----CCCCCCCCCCCC-----
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNT-----QVPFSESHRTDQ----- 265 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~~~-----~~~~~E~~~~~~----- 265 (476)
|||+||........+++...+++|+.++.+++++|.+. +.+ +||++||.++|+... ..+++|+++..+
T Consensus 81 vih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~-~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~ 159 (325)
T PLN02989 81 VFHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVK-RVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEE 159 (325)
T ss_pred EEEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCce-EEEEecchhheecCCccCCCCCccCcCCCCchhHhcc
Confidence 99999975443344556788999999999999999875 444 999999998775432 235677766521
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC-CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHH
Q 011841 266 PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (476)
+.+.|+.+|.++|.+++.+.+++|++++++||++||||+..+. .+...++..+..++.. . +.+.++|+|++|
T Consensus 160 ~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~i~~~~~~~~~--~-----~~~~r~~i~v~D 232 (325)
T PLN02989 160 RKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPTLNFSVAVIVELMKGKNP--F-----NTTHHRFVDVRD 232 (325)
T ss_pred cccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCCCCchHHHHHHHHcCCCC--C-----CCcCcCeeEHHH
Confidence 2468999999999999999988899999999999999986543 2444556666666643 2 134578999999
Q ss_pred HHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCC-CCCCCCcccccHHHH
Q 011841 345 VVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP-RNGDVPYTHANVSLA 423 (476)
Q Consensus 345 va~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~-~~~~~~~~~~d~~ka 423 (476)
+|++++.+++++.. . ++||++ +..+++.|+++++.+.++... +...+.. ...+...+..|++|+
T Consensus 233 va~a~~~~l~~~~~-~------------~~~ni~-~~~~s~~ei~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~ 297 (325)
T PLN02989 233 VALAHVKALETPSA-N------------GRYIID-GPVVTIKDIENVLREFFPDLC-IADRNEDITELNSVTFNVCLDKV 297 (325)
T ss_pred HHHHHHHHhcCccc-C------------ceEEEe-cCCCCHHHHHHHHHHHCCCCC-CCCCCCCcccccccCcCCCHHHH
Confidence 99999999987653 2 789995 458999999999999997421 1110000 011223567899998
Q ss_pred HHhcCCCcccCHHHHHHHHHHHHHHHc
Q 011841 424 YKDFGYKPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 424 ~~~LG~~p~~~l~e~l~~~v~~~~~~~ 450 (476)
++ |||+|.++++|+|+++++||++..
T Consensus 298 ~~-lg~~p~~~l~~gi~~~~~~~~~~~ 323 (325)
T PLN02989 298 KS-LGIIEFTPTETSLRDTVLSLKEKC 323 (325)
T ss_pred HH-cCCCCCCCHHHHHHHHHHHHHHhC
Confidence 86 999999999999999999997643
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=326.46 Aligned_cols=290 Identities=21% Similarity=0.306 Sum_probs=236.5
Q ss_pred EEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEEEcc
Q 011841 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLA 201 (476)
Q Consensus 122 LVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~A 201 (476)
|||||+||||++|++.|+++|++|+++.+. ..+|+.|.+.+.++++..++|+|||+|
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~-----------------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A 57 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH-----------------------KELDLTRQADVEAFFAKEKPTYVILAA 57 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc-----------------------ccCCCCCHHHHHHHHhccCCCEEEEee
Confidence 699999999999999999999998876531 248999999999999988889999999
Q ss_pred ccCCh-hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCC---CCCCC-hHHHHHHH
Q 011841 202 AQAGV-RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT---DQPAS-LYAATKKA 276 (476)
Q Consensus 202 g~~~~-~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~---~~p~~-~Y~~sK~~ 276 (476)
+.... .....++..+++.|+.++.+|+++|++.+++ +||++||..|||.....+++|+++. ..|.+ .|+.+|.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~ 136 (306)
T PLN02725 58 AKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIA 136 (306)
T ss_pred eeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHH
Confidence 98543 2344567788999999999999999999986 9999999999998767788888632 23433 59999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCC----CCcHHHHH----HHHHcCCceEE-EeeCCCCceeEeceeHHHHHH
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRP----DMAYFFFT----KDILQGKTIDV-YKTQDDREVARDFTYIDDVVK 347 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~----~~~~~~~~----~~~~~g~~~~~-~~~~~~~~~~~~~v~v~Dva~ 347 (476)
+|++++.+.+.++++++++||+.||||+... ...+..++ .....+.++.+ + +++.+.++|+|++|+++
T Consensus 137 ~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dv~~ 213 (306)
T PLN02725 137 GIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHPENSHVIPALIRRFHEAKANGAPEVVVW---GSGSPLREFLHVDDLAD 213 (306)
T ss_pred HHHHHHHHHHHhCCCEEEEEecceeCCCCCCCCCCCcccHHHHHHHHHHhhcCCCeEEEc---CCCCeeeccccHHHHHH
Confidence 9999999998889999999999999997531 12233333 33456766665 4 66888999999999999
Q ss_pred HHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhc
Q 011841 348 GCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDF 427 (476)
Q Consensus 348 a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~L 427 (476)
+++.++++.... +.||++++..+++.|+++.+.+.++.+..+...+ +...+.....+|++|++ +|
T Consensus 214 ~~~~~~~~~~~~-------------~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k~~-~l 278 (306)
T PLN02725 214 AVVFLMRRYSGA-------------EHVNVGSGDEVTIKELAELVKEVVGFEGELVWDT-SKPDGTPRKLMDSSKLR-SL 278 (306)
T ss_pred HHHHHHhccccC-------------cceEeCCCCcccHHHHHHHHHHHhCCCCceeecC-CCCCcccccccCHHHHH-Hh
Confidence 999999874322 6789999999999999999999999776554433 22333455678999996 59
Q ss_pred CCCcccCHHHHHHHHHHHHHHHcCCC
Q 011841 428 GYKPTTDLAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 428 G~~p~~~l~e~l~~~v~~~~~~~~~~ 453 (476)
||+|+++++|+|+++++|++++.+..
T Consensus 279 g~~p~~~~~~~l~~~~~~~~~~~~~~ 304 (306)
T PLN02725 279 GWDPKFSLKDGLQETYKWYLENYETG 304 (306)
T ss_pred CCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999987653
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=326.83 Aligned_cols=300 Identities=23% Similarity=0.250 Sum_probs=230.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
.++|+||||||+||||++++++|+++|++|++++|..+.... ........ ..+++++.+|++|.+.+.++++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 82 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKN---THLRELEGGKERLILCKADLQDYEALKAAIDGC-- 82 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhH---HHHHHhhCCCCcEEEEecCcCChHHHHHHHhcC--
Confidence 356899999999999999999999999999999996432111 01111111 236889999999999999999976
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCc-cccCCCCC---CCCCCCCC-----CCC
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS-SVYGLNTQ---VPFSESHR-----TDQ 265 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~-~vyg~~~~---~~~~E~~~-----~~~ 265 (476)
|+|||+|+.. ..++...+++|+.++.+++++|++.+++ +||++||. ++||.... .+++|+++ +..
T Consensus 83 d~Vih~A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~ 156 (342)
T PLN02214 83 DGVFHTASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKN 156 (342)
T ss_pred CEEEEecCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeccceeeeccCCCCCCcccCcccCCChhhccc
Confidence 9999999974 2467888999999999999999999886 99999996 68975332 24677752 224
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC--CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 266 PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
|.+.|+.+|.++|.+++.+.+++|++++++||++||||+..+. .....++ .++.++... + +++.++|+|++
T Consensus 157 p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~~~~~~~~~-~~~~g~~~~-~-----~~~~~~~i~V~ 229 (342)
T PLN02214 157 TKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTINASLYHVL-KYLTGSAKT-Y-----ANLTQAYVDVR 229 (342)
T ss_pred cccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHH-HHHcCCccc-C-----CCCCcCeeEHH
Confidence 6789999999999999999988899999999999999976532 1222333 345555432 2 34578999999
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCC-CccceeecCCCCCCCCcccccHHH
Q 011841 344 DVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT-KAKKHVIRMPRNGDVPYTHANVSL 422 (476)
Q Consensus 344 Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~d~~k 422 (476)
|+|++++.+++++... +.||+++ ..+++.|+++.+.+.++. +.+.... .....+.....+|++|
T Consensus 230 Dva~a~~~al~~~~~~-------------g~yn~~~-~~~~~~el~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~k 294 (342)
T PLN02214 230 DVALAHVLVYEAPSAS-------------GRYLLAE-SARHRGEVVEILAKLFPEYPLPTKCK-DEKNPRAKPYKFTNQK 294 (342)
T ss_pred HHHHHHHHHHhCcccC-------------CcEEEec-CCCCHHHHHHHHHHHCCCCCCCCCCc-cccCCCCCccccCcHH
Confidence 9999999999875432 6799987 578999999999999963 2111111 1122344455689999
Q ss_pred HHHhcCCCcccCHHHHHHHHHHHHHHHc
Q 011841 423 AYKDFGYKPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 423 a~~~LG~~p~~~l~e~l~~~v~~~~~~~ 450 (476)
++ +|||+|. +++|+|+++++||++..
T Consensus 295 ~~-~LG~~p~-~lee~i~~~~~~~~~~~ 320 (342)
T PLN02214 295 IK-DLGLEFT-STKQSLYDTVKSLQEKG 320 (342)
T ss_pred HH-HcCCccc-CHHHHHHHHHHHHHHcC
Confidence 97 5999995 99999999999998754
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=332.95 Aligned_cols=302 Identities=17% Similarity=0.188 Sum_probs=237.4
Q ss_pred CCCCEEEEE----CCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHH--HHhhhcCCceEEEEeecCCHHHHHHhh
Q 011841 116 PNGMTVLVT----GAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRA--RQKLLQKHQVFIVEGDLNDAPLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVt----GatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~--~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 189 (476)
.+.|+|||| |||||||++|+++|+++||+|++++|............ ....+...+++++.+|+.| +.+++
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~~~~~ 126 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPAD---VKSKV 126 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHH---HHhhh
Confidence 345789999 99999999999999999999999999765321110000 0011223469999999877 55566
Q ss_pred ccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCCh
Q 011841 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASL 269 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~ 269 (476)
...++|+|||+++. ++.++.+|+++|++.|++ +|||+||.++|+.....++.|+++. .|..
T Consensus 127 ~~~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvk-r~V~~SS~~vyg~~~~~p~~E~~~~-~p~~- 187 (378)
T PLN00016 127 AGAGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLK-QFLFCSSAGVYKKSDEPPHVEGDAV-KPKA- 187 (378)
T ss_pred ccCCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCC-EEEEEccHhhcCCCCCCCCCCCCcC-CCcc-
Confidence 55567999999864 245688999999999987 9999999999998766678887765 3433
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
+|..+|.++++ .+++++++||+++|||+... ....+++..+..++++.++ +++.+.++|+|++|+|+++
T Consensus 188 ---sK~~~E~~l~~----~~l~~~ilRp~~vyG~~~~~-~~~~~~~~~~~~~~~i~~~---g~g~~~~~~i~v~Dva~ai 256 (378)
T PLN00016 188 ---GHLEVEAYLQK----LGVNWTSFRPQYIYGPGNNK-DCEEWFFDRLVRGRPVPIP---GSGIQLTQLGHVKDLASMF 256 (378)
T ss_pred ---hHHHHHHHHHH----cCCCeEEEeceeEECCCCCC-chHHHHHHHHHcCCceeec---CCCCeeeceecHHHHHHHH
Confidence 79999988764 58999999999999997543 3455677888899888777 6788999999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCC---------CCCCcccccH
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN---------GDVPYTHANV 420 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~---------~~~~~~~~d~ 420 (476)
+.+++++...+ ++||+++++.+|+.|+++.+.+.+|.+..+...+.... ........|+
T Consensus 257 ~~~l~~~~~~~------------~~yni~~~~~~s~~el~~~i~~~~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~ 324 (378)
T PLN00016 257 ALVVGNPKAAG------------QIFNIVSDRAVTFDGMAKACAKAAGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASP 324 (378)
T ss_pred HHHhcCccccC------------CEEEecCCCccCHHHHHHHHHHHhCCCCceeecCccccCccccccccccccccccCH
Confidence 99998865433 89999999999999999999999998775543332211 1233455799
Q ss_pred HHHHHhcCCCcccCHHHHHHHHHHHHHHHcCCCCccccCCCcccce
Q 011841 421 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTT 466 (476)
Q Consensus 421 ~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~~~~~~~~~~~~~~ 466 (476)
+|++++|||+|+++++|+|+++++||++....+ |+.+|+..+
T Consensus 325 ~ka~~~LGw~p~~~l~egl~~~~~~~~~~~~~~----~~~~~~~~~ 366 (378)
T PLN00016 325 RKAKEELGWTPKFDLVEDLKDRYELYFGRGRDR----KEADFETDD 366 (378)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHhcCCCc----cccCccccH
Confidence 999999999999999999999999999888764 556666554
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=314.98 Aligned_cols=303 Identities=33% Similarity=0.518 Sum_probs=251.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||++|+++|+++|++|++++|......... .++.++.+|+.|.+.+.++++.++ |+||
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~-d~vi 69 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL----------SGVEFVVLDLTDRDLVDELAKGVP-DAVI 69 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc----------cccceeeecccchHHHHHHHhcCC-CEEE
Confidence 45999999999999999999999999999999655332211 478899999999988888888766 9999
Q ss_pred EccccCChhhhhc-ChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCC-CCCCCCCC-CCCCCCCChHHHHHH
Q 011841 199 HLAAQAGVRYAMQ-NPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN-TQVPFSES-HRTDQPASLYAATKK 275 (476)
Q Consensus 199 ~~Ag~~~~~~~~~-~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~-~~~~~~E~-~~~~~p~~~Y~~sK~ 275 (476)
|+|+......... ++..++..|+.++.+++++|++.+++ +|||.||.++|+.. ...+++|+ .+. .|.++|+.+|.
T Consensus 70 h~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~-~~v~~ss~~~~~~~~~~~~~~E~~~~~-~p~~~Yg~sK~ 147 (314)
T COG0451 70 HLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVK-RFVFASSVSVVYGDPPPLPIDEDLGPP-RPLNPYGVSKL 147 (314)
T ss_pred EccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCCCceECCCCCCCCcccccCCC-CCCCHHHHHHH
Confidence 9999976544433 46779999999999999999998886 99998888877765 23367777 444 66679999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC---CcHHHHHHHHHcCCc-eEEEeeCCCCceeEeceeHHHHHHHHHH
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD---MAYFFFTKDILQGKT-IDVYKTQDDREVARDFTYIDDVVKGCVG 351 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~v~Dva~a~~~ 351 (476)
++|..++.+...+|++++++||++||||+.... .+...++..+.++.+ +.+. +++...++++|++|++++++.
T Consensus 148 ~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~D~a~~~~~ 224 (314)
T COG0451 148 AAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDLSSGVVSAFIRQLLKGEPIIVIG---GDGSQTRDFVYVDDVADALLL 224 (314)
T ss_pred HHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCCCcCcHHHHHHHHHhCCCcceEe---CCCceeEeeEeHHHHHHHHHH
Confidence 999999999988899999999999999987765 456666667788887 4444 567888999999999999999
Q ss_pred HHhhcCcCCCCCCCCCCCCCceEEEEcCCC-cccHHHHHHHHHHHhCCCcc-ceeecC-CCCCCCCcccccHHHHHHhcC
Q 011841 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTS-PVPVGRLVSILENLLNTKAK-KHVIRM-PRNGDVPYTHANVSLAYKDFG 428 (476)
Q Consensus 352 ~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~-~vt~~el~~~l~~~~g~~~~-~~~~~~-~~~~~~~~~~~d~~ka~~~LG 428 (476)
+++++.. .+||++++. ++++.|+++.+.+.+|.+.. ....+. ...........|.+|++++||
T Consensus 225 ~~~~~~~--------------~~~ni~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 290 (314)
T COG0451 225 ALENPDG--------------GVFNIGSGTAEITVRELAEAVAEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALG 290 (314)
T ss_pred HHhCCCC--------------cEEEeCCCCCcEEHHHHHHHHHHHhCCCCcceeecCCCCCCcccccccCCHHHHHHHhC
Confidence 9998654 379999997 99999999999999998866 333332 233445567799999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHHcC
Q 011841 429 YKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 429 ~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
|+|++++++++.+++.|+.....
T Consensus 291 ~~p~~~~~~~i~~~~~~~~~~~~ 313 (314)
T COG0451 291 WEPKVSLEEGLADTLEWLLKKLE 313 (314)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999987653
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=321.16 Aligned_cols=291 Identities=21% Similarity=0.307 Sum_probs=221.9
Q ss_pred EEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH----HHHhhcc---CC
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL----LTKLFDV---VP 193 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~----l~~~~~~---~~ 193 (476)
||||||+||||++|+++|+++|++|+++.|...... . . ..+..+|+.|... +++++++ .+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~---~--~--------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 68 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT---K--F--------VNLVDLDIADYMDKEDFLAQIMAGDDFGD 68 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcch---H--H--------HhhhhhhhhhhhhHHHHHHHHhcccccCC
Confidence 899999999999999999999998777766433210 0 0 0112345555433 3344432 25
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
+|+|||+||..... ..+++..++.|+.++.+|+++|++.+. +|||+||.++||.....+..|+++. .|.+.|+.+
T Consensus 69 ~d~Vih~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 143 (308)
T PRK11150 69 IEAIFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTDDFIEEREYE-KPLNVYGYS 143 (308)
T ss_pred ccEEEECceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEcchHHhCcCCCCCCccCCCC-CCCCHHHHH
Confidence 79999999864432 234566899999999999999999885 6999999999997655456666554 788999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCC----cHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM----AYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
|.++|++++.+...++++++++||++||||+..+.. ....+.+.+.+++...++. ++++..++|+|++|+|+++
T Consensus 144 K~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--g~~~~~r~~i~v~D~a~a~ 221 (308)
T PRK11150 144 KFLFDEYVRQILPEANSQICGFRYFNVYGPREGHKGSMASVAFHLNNQLNNGENPKLFE--GSENFKRDFVYVGDVAAVN 221 (308)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCCCccchhHHHHHHHHhcCCCCEEec--CCCceeeeeeeHHHHHHHH
Confidence 999999999998888999999999999999864432 2345557788887665552 4567889999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCC---CCCcccccHHHHHHh
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG---DVPYTHANVSLAYKD 426 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~---~~~~~~~d~~ka~~~ 426 (476)
+.+++... + ++||+++++.+++.|+++.+.+.+|.. .+...+.+... .......|++|+++
T Consensus 222 ~~~~~~~~--~------------~~yni~~~~~~s~~el~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~- 285 (308)
T PRK11150 222 LWFWENGV--S------------GIFNCGTGRAESFQAVADAVLAYHKKG-EIEYIPFPDKLKGRYQAFTQADLTKLRA- 285 (308)
T ss_pred HHHHhcCC--C------------CeEEcCCCCceeHHHHHHHHHHHhCCC-cceeccCccccccccceecccCHHHHHh-
Confidence 99987532 2 799999999999999999999999853 23333333321 12345689999985
Q ss_pred cCCCcc-cCHHHHHHHHHHHHH
Q 011841 427 FGYKPT-TDLAAGLRKFVKWYV 447 (476)
Q Consensus 427 LG~~p~-~~l~e~l~~~v~~~~ 447 (476)
+||+|+ ++++|+|+++++|+.
T Consensus 286 ~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 286 AGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred cCCCCCCCCHHHHHHHHHHHhh
Confidence 799997 499999999999975
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=320.64 Aligned_cols=303 Identities=20% Similarity=0.238 Sum_probs=229.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++|+||||||+||||++|+++|+++|++|++++|+....... ...........+++++.+|+.|++.+.++++++ |+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d~ 79 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKT-EHLLALDGAKERLHLFKANLLEEGSFDSVVDGC--EG 79 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhH-HHHHhccCCCCceEEEeccccCcchHHHHHcCC--CE
Confidence 458999999999999999999999999999999865422111 111000011247899999999999999999976 99
Q ss_pred EEEccccCChhhhhcChH-HHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCcc--ccCCC---CCCCCCCCCCCCCC---
Q 011841 197 VLHLAAQAGVRYAMQNPQ-SYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSS--VYGLN---TQVPFSESHRTDQP--- 266 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~-~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~--vyg~~---~~~~~~E~~~~~~p--- 266 (476)
|||+|+.... ...++. .++++|+.++.+++++|.+. +++ +||++||.+ +|+.. ...+++|+.+. .|
T Consensus 80 Vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~-~p~~~ 155 (322)
T PLN02662 80 VFHTASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTSSMAAVAYNGKPLTPDVVVDETWFS-DPAFC 155 (322)
T ss_pred EEEeCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEccCHHHhcCCCcCCCCCCcCCcccCC-ChhHh
Confidence 9999997432 233443 78899999999999999887 765 999999976 46542 22356776543 23
Q ss_pred ---CChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC-CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 267 ---ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 267 ---~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
.+.|+.+|..+|.+++.+.++++++++++||+++|||+..+. .....++..++.+++. + +++.++|+|+
T Consensus 156 ~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~i~v 228 (322)
T PLN02662 156 EESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPTLNTSAEAILNLINGAQT--F-----PNASYRWVDV 228 (322)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCCCCchHHHHHHHhcCCcc--C-----CCCCcCeEEH
Confidence 368999999999999999988899999999999999976543 2334455566666542 2 3467899999
Q ss_pred HHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHH
Q 011841 343 DDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSL 422 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 422 (476)
+|+|++++.+++++... +.||+++ ..+++.|+++++.+.++... ......+...+.....+|++|
T Consensus 229 ~Dva~a~~~~~~~~~~~-------------~~~~~~g-~~~s~~e~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~d~~k 293 (322)
T PLN02662 229 RDVANAHIQAFEIPSAS-------------GRYCLVE-RVVHYSEVVKILHELYPTLQ-LPEKCADDKPYVPTYQVSKEK 293 (322)
T ss_pred HHHHHHHHHHhcCcCcC-------------CcEEEeC-CCCCHHHHHHHHHHHCCCCC-CCCCCCCccccccccccChHH
Confidence 99999999999876432 6688874 78999999999999987421 111111112344567799999
Q ss_pred HHHhcCCCcccCHHHHHHHHHHHHHHHc
Q 011841 423 AYKDFGYKPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 423 a~~~LG~~p~~~l~e~l~~~v~~~~~~~ 450 (476)
+++ |||++ ++++++|+++++||++..
T Consensus 294 ~~~-lg~~~-~~~~~~l~~~~~~~~~~~ 319 (322)
T PLN02662 294 AKS-LGIEF-IPLEVSLKDTVESLKEKG 319 (322)
T ss_pred HHH-hCCcc-ccHHHHHHHHHHHHHHcC
Confidence 985 99997 599999999999997653
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=315.52 Aligned_cols=298 Identities=25% Similarity=0.407 Sum_probs=237.8
Q ss_pred EEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc--CCccEE
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV--VPFTHV 197 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--~~~d~V 197 (476)
||||||+||||+++++.|+++|+ +|++++|..... .. .. .....+..|+.+.+.++.+.+. .++|+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-----~~-~~----~~~~~~~~d~~~~~~~~~~~~~~~~~~D~v 70 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-----KF-LN----LADLVIADYIDKEDFLDRLEKGAFGKIEAI 70 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-----hh-hh----hhheeeeccCcchhHHHHHHhhccCCCCEE
Confidence 69999999999999999999998 788887754311 00 00 0123566788888888777652 357999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
||+|+.... ...++...+++|+.++.+|+++|++.+. +||++||.++|+... .+++|++++..|.+.|+.+|..+
T Consensus 71 vh~A~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~SS~~vy~~~~-~~~~e~~~~~~p~~~Y~~sK~~~ 145 (314)
T TIGR02197 71 FHQGACSDT--TETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYASSAATYGDGE-AGFREGRELERPLNVYGYSKFLF 145 (314)
T ss_pred EECccccCc--cccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEccHHhcCCCC-CCcccccCcCCCCCHHHHHHHHH
Confidence 999997442 3457788899999999999999999875 799999999998764 36777776556889999999999
Q ss_pred HHHHHHHHH--HhCCcEEEEeeCcccCCCCCC----CCcHHHHHHHHHcCCceEEEee---CCCCceeEeceeHHHHHHH
Q 011841 278 EEIAHTYNH--IYGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKT---QDDREVARDFTYIDDVVKG 348 (476)
Q Consensus 278 E~~~~~~~~--~~gi~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~v~v~Dva~a 348 (476)
|.+++++.. ..+++++++||+.||||+... ...+..++..+..++++.++.. .+++++.++|+|++|++++
T Consensus 146 e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~ 225 (314)
T TIGR02197 146 DQYVRRRVLPEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDV 225 (314)
T ss_pred HHHHHHHhHhhccCCceEEEEEeeccCCCCCCCCCcccHHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHH
Confidence 999998643 236899999999999997542 2345667888888888877631 1457788999999999999
Q ss_pred HHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCC---CCCcccccHHHHHH
Q 011841 349 CVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG---DVPYTHANVSLAYK 425 (476)
Q Consensus 349 ~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~---~~~~~~~d~~ka~~ 425 (476)
++.++.. . .. ++||+++++++|+.|+++.+.+.+|.+..+...+.|... ......+|++|+++
T Consensus 226 i~~~~~~-~-~~------------~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 291 (314)
T TIGR02197 226 NLWLLEN-G-VS------------GIFNLGTGRARSFNDLADAVFKALGKDEKIEYIPMPEALRGKYQYFTQADITKLRA 291 (314)
T ss_pred HHHHHhc-c-cC------------ceEEcCCCCCccHHHHHHHHHHHhCCCCcceeccCccccccccccccccchHHHHH
Confidence 9999987 2 22 899999999999999999999999987655555555431 23456789999999
Q ss_pred hcCCCcccCHHHHHHHHHHHHH
Q 011841 426 DFGYKPTTDLAAGLRKFVKWYV 447 (476)
Q Consensus 426 ~LG~~p~~~l~e~l~~~v~~~~ 447 (476)
+|||+|+++++|+|+++++|++
T Consensus 292 ~l~~~p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 292 AGYYGPFTTLEEGVKDYVQWLL 313 (314)
T ss_pred hcCCCCcccHHHHHHHHHHHHh
Confidence 9999999999999999999985
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=320.29 Aligned_cols=307 Identities=16% Similarity=0.189 Sum_probs=227.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+|+||||||+||||++|+++|+++|++|++++|........ . ........++++++.+|++|.+++.++++++ |
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~-~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 82 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKI-A-HLRALQELGDLKIFGADLTDEESFEAPIAGC--D 82 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHH-H-HHHhcCCCCceEEEEcCCCChHHHHHHHhcC--C
Confidence 4578999999999999999999999999999999865321110 0 0011111236889999999999999999876 9
Q ss_pred EEEEccccCChhhhhcChH-HHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCCCC----CCCCCCCCC-------
Q 011841 196 HVLHLAAQAGVRYAMQNPQ-SYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNT----QVPFSESHR------- 262 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~-~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~~~----~~~~~E~~~------- 262 (476)
+|||+|+... ....++. .++++|+.++.+|+++|.+. +++ +||++||.++||... ..+.+|+..
T Consensus 83 ~vih~A~~~~--~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~-~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~ 159 (338)
T PLN00198 83 LVFHVATPVN--FASEDPENDMIKPAIQGVHNVLKACAKAKSVK-RVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLT 159 (338)
T ss_pred EEEEeCCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEeecceeeeccCCCCCCceeccccCCchhhhh
Confidence 9999999632 2223443 56799999999999999886 454 999999999998542 234555421
Q ss_pred -CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC--CcHHHHHHHHHcCCceEEEeeCCCCc----e
Q 011841 263 -TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDRE----V 335 (476)
Q Consensus 263 -~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~----~ 335 (476)
..+|.++|+.+|.++|.+++.+.+++|++++++||++||||+.... ..+ .++..+..++++.+.+. ++. .
T Consensus 160 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~~~~~-~~~~~~~~~~~~~~~g~--~~~~~~~~ 236 (338)
T PLN00198 160 SEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDIPSSL-SLAMSLITGNEFLINGL--KGMQMLSG 236 (338)
T ss_pred hcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCCCCcH-HHHHHHHcCCccccccc--cccccccC
Confidence 2256788999999999999999998999999999999999975432 122 23345667776655521 122 2
Q ss_pred eEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCC-CccceeecCCCCCCCC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT-KAKKHVIRMPRNGDVP 414 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~ 414 (476)
.++|+||+|+|++++.+++.+... +.|+ +++..+++.|+++.+.+.++. +.+....+.+ ...
T Consensus 237 ~~~~i~V~D~a~a~~~~~~~~~~~-------------~~~~-~~~~~~s~~el~~~i~~~~~~~~~~~~~~~~~---~~~ 299 (338)
T PLN00198 237 SISITHVEDVCRAHIFLAEKESAS-------------GRYI-CCAANTSVPELAKFLIKRYPQYQVPTDFGDFP---SKA 299 (338)
T ss_pred CcceeEHHHHHHHHHHHhhCcCcC-------------CcEE-EecCCCCHHHHHHHHHHHCCCCCCCccccccC---CCC
Confidence 479999999999999999875432 5675 455679999999999998863 2222211111 233
Q ss_pred cccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHc
Q 011841 415 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 415 ~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~ 450 (476)
...+|++|+++ +||+|+++++|+|+++++||+++.
T Consensus 300 ~~~~~~~k~~~-~G~~p~~~l~~gi~~~~~~~~~~~ 334 (338)
T PLN00198 300 KLIISSEKLIS-EGFSFEYGIEEIYDQTVEYFKAKG 334 (338)
T ss_pred ccccChHHHHh-CCceecCcHHHHHHHHHHHHHHcC
Confidence 45689999987 699999999999999999998653
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=321.35 Aligned_cols=314 Identities=18% Similarity=0.231 Sum_probs=226.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++|+||||||+||||++++++|+++|++|++++|..... ...........+++++.+|++|.+.+.++++++ |
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d 81 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKS----LHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGC--D 81 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHH----HHHHHhhccCCeEEEEECCCCCHHHHHHHHcCC--C
Confidence 5778999999999999999999999999999999854211 111111112346889999999999999999865 9
Q ss_pred EEEEccccCChhh--hhcChHHH-----HHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCC-----CCCCCCCC
Q 011841 196 HVLHLAAQAGVRY--AMQNPQSY-----VASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQ-----VPFSESHR 262 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~--~~~~~~~~-----~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~-----~~~~E~~~ 262 (476)
+|||+|+...... ...+++.. ++.|+.++.+|+++|++.+ ++ +||++||.++||.... .+++|+.+
T Consensus 82 ~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~E~~~ 160 (353)
T PLN02896 82 GVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVK-RVVFTSSISTLTAKDSNGRWRAVVDETCQ 160 (353)
T ss_pred EEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCcc-EEEEEechhhccccccCCCCCCccCcccC
Confidence 9999999855432 22344444 4455799999999998875 54 9999999999985321 34566522
Q ss_pred C--------CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC--CcHHHHHHHHHcCCceE--EEeeC
Q 011841 263 T--------DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTID--VYKTQ 330 (476)
Q Consensus 263 ~--------~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~g~~~~--~~~~~ 330 (476)
. ..+.++|+.+|.++|.+++.+.+.++++++++||++||||+.... ..+..+.. ...|.... .....
T Consensus 161 ~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~ 239 (353)
T PLN02896 161 TPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPSVPSSIQVLLS-PITGDSKLFSILSAV 239 (353)
T ss_pred CcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCCCCchHHHHHH-HhcCCcccccccccc
Confidence 1 124468999999999999999998999999999999999976532 11222222 22343221 11000
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCC-ccceeecCCC
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTK-AKKHVIRMPR 409 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~-~~~~~~~~~~ 409 (476)
+.....++|+|++|+|++++.+++.+... ++|++ ++.++++.|+++.+.+.++.. ......+ +.
T Consensus 240 ~~~~~~~dfi~v~Dva~a~~~~l~~~~~~-------------~~~~~-~~~~~s~~el~~~i~~~~~~~~~~~~~~~-~~ 304 (353)
T PLN02896 240 NSRMGSIALVHIEDICDAHIFLMEQTKAE-------------GRYIC-CVDSYDMSELINHLSKEYPCSNIQVRLDE-EK 304 (353)
T ss_pred ccccCceeEEeHHHHHHHHHHHHhCCCcC-------------ccEEe-cCCCCCHHHHHHHHHHhCCCCCccccccc-cc
Confidence 11122469999999999999999864322 56865 567899999999999999743 2222112 22
Q ss_pred CCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCCCC
Q 011841 410 NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQP 454 (476)
Q Consensus 410 ~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~~ 454 (476)
..+.. ...|.++++ +|||+|+++++++|+++++||+++...++
T Consensus 305 ~~~~~-~~~~~~~~~-~lGw~p~~~l~~~i~~~~~~~~~~~~~~~ 347 (353)
T PLN02896 305 RGSIP-SEISSKKLR-DLGFEYKYGIEEIIDQTIDCCVDHGFLPQ 347 (353)
T ss_pred cCccc-cccCHHHHH-HcCCCccCCHHHHHHHHHHHHHHCCCCCc
Confidence 23333 356888886 59999999999999999999999877543
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=320.82 Aligned_cols=310 Identities=18% Similarity=0.235 Sum_probs=225.4
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
+.|+||||||+||||++++++|+++|++|++++|......... .. .... ...+++++.+|+.|.+.+.++++++ |
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~-~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~--d 79 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVK-HL-LDLPGATTRLTLWKADLAVEGSFDDAIRGC--T 79 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHH-HH-HhccCCCCceEEEEecCCChhhHHHHHhCC--C
Confidence 5579999999999999999999999999999998654322111 10 0111 1135889999999999999999876 9
Q ss_pred EEEEccccCChhhhhcCh-HHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCC-CCC-CCCCCC--------CC
Q 011841 196 HVLHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVP-FSESHR--------TD 264 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~-~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~-~~~-~~E~~~--------~~ 264 (476)
+|||+|+.... ...++ ...+++|+.++.+|+++|++.+..++|||+||.++|+... ..+ ++|++. ..
T Consensus 80 ~ViH~A~~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 157 (351)
T PLN02650 80 GVFHVATPMDF--ESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKK 157 (351)
T ss_pred EEEEeCCCCCC--CCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccc
Confidence 99999987432 22233 4788999999999999999877324999999998776532 223 455532 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHH--HHcCCceEEEeeCCCCceeEeceeH
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKD--ILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
.+.++|+.+|.++|.+++.+.+++|++++++||++||||+...... ..++.. ...++... + + ....++|+|+
T Consensus 158 ~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~~-~~~~~~~~~~~~~~~~-~---~-~~~~r~~v~V 231 (351)
T PLN02650 158 MTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSMP-PSLITALSLITGNEAH-Y---S-IIKQGQFVHL 231 (351)
T ss_pred cccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCCC-ccHHHHHHHhcCCccc-c---C-cCCCcceeeH
Confidence 3456899999999999999999999999999999999997643211 122222 23333221 2 1 1234799999
Q ss_pred HHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHH
Q 011841 343 DDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSL 422 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 422 (476)
+|+|++++.+++++... ++| ++++..+++.|+++.+.+.++........+ ....+......|++|
T Consensus 232 ~Dva~a~~~~l~~~~~~-------------~~~-i~~~~~~s~~el~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k 296 (351)
T PLN02650 232 DDLCNAHIFLFEHPAAE-------------GRY-ICSSHDATIHDLAKMLREKYPEYNIPARFP-GIDEDLKSVEFSSKK 296 (351)
T ss_pred HHHHHHHHHHhcCcCcC-------------ceE-EecCCCcCHHHHHHHHHHhCcccCCCCCCC-CcCcccccccCChHH
Confidence 99999999999875432 568 456678999999999999887321111111 112344555678888
Q ss_pred HHHhcCCCcccCHHHHHHHHHHHHHHHcCCCC
Q 011841 423 AYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQP 454 (476)
Q Consensus 423 a~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~~ 454 (476)
++ +|||+|+++|+|+|+++++||++....++
T Consensus 297 ~~-~lG~~p~~~l~egl~~~i~~~~~~~~~~~ 327 (351)
T PLN02650 297 LT-DLGFTFKYSLEDMFDGAIETCREKGLIPL 327 (351)
T ss_pred HH-HhCCCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence 75 79999999999999999999998765543
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=313.04 Aligned_cols=312 Identities=26% Similarity=0.410 Sum_probs=245.0
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLH 199 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 199 (476)
+||||||+|+||+++++.|+++|++|++++|.......... ......+++++.+|+.|.+.+.++++..++|+|||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~ 76 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALK----RGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIH 76 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhh----hhccccceEEEECCCCCHHHHHHHHHhCCCcEEEE
Confidence 58999999999999999999999999998764332111111 11111268889999999999999998767899999
Q ss_pred ccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 011841 200 LAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE 279 (476)
Q Consensus 200 ~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~ 279 (476)
+||.........++...++.|+.++.+++++|.+.+++ +||++||.++|+.....+++|+++. .|.+.|+.+|.++|.
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~ss~~~~g~~~~~~~~e~~~~-~~~~~y~~sK~~~e~ 154 (328)
T TIGR01179 77 FAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSSSAAVYGEPSSIPISEDSPL-GPINPYGRSKLMSER 154 (328)
T ss_pred CccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC-EEEEecchhhcCCCCCCCccccCCC-CCCCchHHHHHHHHH
Confidence 99986544455667788999999999999999998875 9999999999987766678888876 688899999999999
Q ss_pred HHHHHHHH-hCCcEEEEeeCcccCCCCCC---------CCcHHHHHHHHH-cCCceEEEee---CCCCceeEeceeHHHH
Q 011841 280 IAHTYNHI-YGLALTGLRFFTVYGPWGRP---------DMAYFFFTKDIL-QGKTIDVYKT---QDDREVARDFTYIDDV 345 (476)
Q Consensus 280 ~~~~~~~~-~gi~~~ilRp~~v~G~~~~~---------~~~~~~~~~~~~-~g~~~~~~~~---~~~~~~~~~~v~v~Dv 345 (476)
+++.++++ .+++++++||+.+|||.... ..++..+..... ...++.+++. .+++++.++|+|++|+
T Consensus 155 ~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~ 234 (328)
T TIGR01179 155 ILRDLSKADPGLSYVILRYFNVAGADPEGTIGEDPPGITHLIPYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDL 234 (328)
T ss_pred HHHHHHHhccCCCEEEEecCcccCCCCCCccccCCcccchHHHHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHH
Confidence 99999877 79999999999999985321 123344444443 3344544320 1246788999999999
Q ss_pred HHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHH
Q 011841 346 VKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAY 424 (476)
Q Consensus 346 a~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~ 424 (476)
+++++.++..... ..+ ++||+++++++|+.|+++.+.+.+|.+..+...+. ...+......+++|++
T Consensus 235 a~~~~~~~~~~~~~~~~-----------~~~n~~~~~~~s~~ei~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 302 (328)
T TIGR01179 235 ADAHLAALEYLLNGGES-----------HVYNLGYGQGFSVLEVIEAFKKVSGVDFPVELAPR-RPGDPASLVADASKIR 302 (328)
T ss_pred HHHHHHHHhhhhcCCCc-----------ceEEcCCCCcccHHHHHHHHHHHhCCCcceEeCCC-CCccccchhcchHHHH
Confidence 9999999986432 111 89999999999999999999999998776554332 2233445567999999
Q ss_pred HhcCCCcccC-HHHHHHHHHHHHHHH
Q 011841 425 KDFGYKPTTD-LAAGLRKFVKWYVSY 449 (476)
Q Consensus 425 ~~LG~~p~~~-l~e~l~~~v~~~~~~ 449 (476)
++|||+|+++ ++++|+++++|+.++
T Consensus 303 ~~lg~~p~~~~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 303 RELGWQPKYTDLEIIIKTAWRWESRN 328 (328)
T ss_pred HHhCCCCCcchHHHHHHHHHHHHhcC
Confidence 9999999998 999999999999764
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=315.39 Aligned_cols=301 Identities=19% Similarity=0.240 Sum_probs=227.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+++||||||+||||++++++|+++|++|++++|+....+.. ...........+++++.+|++|.+.+.++++++ |+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--d~ 80 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKT-EHLLALDGAKERLKLFKADLLEESSFEQAIEGC--DA 80 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHH-HHHHhccCCCCceEEEecCCCCcchHHHHHhCC--CE
Confidence 468999999999999999999999999999999865432211 111110011247899999999999999999976 99
Q ss_pred EEEccccCChhhhhcCh-HHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCcccc--CCC---CCCCCCCCCCCC-----
Q 011841 197 VLHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVY--GLN---TQVPFSESHRTD----- 264 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~-~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vy--g~~---~~~~~~E~~~~~----- 264 (476)
|||+|+.... ...++ ...+++|+.|+.+++++|++. +++ +||++||.++| +.. .+.+++|+++..
T Consensus 81 vih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~-rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~ 157 (322)
T PLN02986 81 VFHTASPVFF--TVKDPQTELIDPALKGTINVLNTCKETPSVK-RVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCR 157 (322)
T ss_pred EEEeCCCcCC--CCCCchhhhhHHHHHHHHHHHHHHHhcCCcc-EEEEecchhheecCCccCCCCCCcCcccCCChHHhh
Confidence 9999997432 22333 357899999999999999985 565 99999998764 332 223467766532
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC-CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
.+.+.|+.+|..+|.+++++.+++|++++++||+.||||+..+. .....++..+..++++ + +.+.++|+|++
T Consensus 158 ~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~--~-----~~~~~~~v~v~ 230 (322)
T PLN02986 158 ETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTLNFSVELIVDFINGKNL--F-----NNRFYRFVDVR 230 (322)
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCCCccHHHHHHHHcCCCC--C-----CCcCcceeEHH
Confidence 24578999999999999999998999999999999999976543 2233456666677653 3 34568999999
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcc--cccHH
Q 011841 344 DVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYT--HANVS 421 (476)
Q Consensus 344 Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~--~~d~~ 421 (476)
|+|++++.+++++... ++||++ +..+++.|+++++.+.++. ..+.. . ...++.... .+|.+
T Consensus 231 Dva~a~~~al~~~~~~-------------~~yni~-~~~~s~~e~~~~i~~~~~~-~~~~~-~-~~~~~~~~~~~~~d~~ 293 (322)
T PLN02986 231 DVALAHIKALETPSAN-------------GRYIID-GPIMSVNDIIDILRELFPD-LCIAD-T-NEESEMNEMICKVCVE 293 (322)
T ss_pred HHHHHHHHHhcCcccC-------------CcEEEe-cCCCCHHHHHHHHHHHCCC-CCCCC-C-CccccccccCCccCHH
Confidence 9999999999886442 679995 4689999999999999873 21111 1 112222222 48999
Q ss_pred HHHHhcCCCcccCHHHHHHHHHHHHHHH
Q 011841 422 LAYKDFGYKPTTDLAAGLRKFVKWYVSY 449 (476)
Q Consensus 422 ka~~~LG~~p~~~l~e~l~~~v~~~~~~ 449 (476)
|+++ |||+|+ +++|+|+++++||++.
T Consensus 294 ~~~~-lg~~~~-~l~e~~~~~~~~~~~~ 319 (322)
T PLN02986 294 KVKN-LGVEFT-PMKSSLRDTILSLKEK 319 (322)
T ss_pred HHHH-cCCccc-CHHHHHHHHHHHHHHc
Confidence 9865 999997 8999999999999764
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=311.64 Aligned_cols=280 Identities=25% Similarity=0.367 Sum_probs=220.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+|+||++|++.|.++|++|+++.|. ..|+.|.+.+.++++..+||+||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~------------------------~~dl~d~~~~~~~~~~~~pd~Vi 56 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS------------------------DLDLTDPEAVAKLLEAFKPDVVI 56 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT------------------------CS-TTSHHHHHHHHHHH--SEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch------------------------hcCCCCHHHHHHHHHHhCCCeEe
Confidence 799999999999999999999999999999872 68999999999999998999999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+||...++.++.+++..+.+|+.++.+|+++|.+.+. ++||+||..||++....|++|++++ +|.+.||++|+++|
T Consensus 57 n~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~--~li~~STd~VFdG~~~~~y~E~d~~-~P~~~YG~~K~~~E 133 (286)
T PF04321_consen 57 NCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGA--RLIHISTDYVFDGDKGGPYTEDDPP-NPLNVYGRSKLEGE 133 (286)
T ss_dssp E------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS-SSTSSSB-TTS-----SSHHHHHHHHHH
T ss_pred ccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCC--cEEEeeccEEEcCCcccccccCCCC-CCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999997 7999999999999888899999998 89999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
+.+++... +.+|+|++++||+ ....++.++++.+.+++.+.++ .++.++++|++|+|++++.++++...
T Consensus 134 ~~v~~~~~----~~~IlR~~~~~g~--~~~~~~~~~~~~~~~~~~i~~~-----~d~~~~p~~~~dlA~~i~~l~~~~~~ 202 (286)
T PF04321_consen 134 QAVRAACP----NALILRTSWVYGP--SGRNFLRWLLRRLRQGEPIKLF-----DDQYRSPTYVDDLARVILELIEKNLS 202 (286)
T ss_dssp HHHHHH-S----SEEEEEE-SEESS--SSSSHHHHHHHHHHCTSEEEEE-----SSCEE--EEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcC----CEEEEecceeccc--CCCchhhhHHHHHhcCCeeEee-----CCceeCCEEHHHHHHHHHHHHHhccc
Confidence 99998433 7899999999999 3345788899999999999998 68899999999999999999998765
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCc-cceeecCCC----CCCCCcccccHHHHHHhcCCCccc
Q 011841 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA-KKHVIRMPR----NGDVPYTHANVSLAYKDFGYKPTT 433 (476)
Q Consensus 359 ~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~-~~~~~~~~~----~~~~~~~~~d~~ka~~~LG~~p~~ 433 (476)
.. ..+++||+++++.+++.|+++.+.+.+|.+. .+...+... ...+.+..+|++|+++.||+++.
T Consensus 203 ~~---------~~~Giyh~~~~~~~S~~e~~~~i~~~~~~~~~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~- 272 (286)
T PF04321_consen 203 GA---------SPWGIYHLSGPERVSRYEFAEAIAKILGLDPELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPP- 272 (286)
T ss_dssp -G---------GG-EEEE---BS-EEHHHHHHHHHHHHTHCTTEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS----
T ss_pred cc---------ccceeEEEecCcccCHHHHHHHHHHHhCCCCceEEecccccCCCCCCCCCcccccHHHHHHccCCCCc-
Confidence 11 1129999999999999999999999999887 334433222 23566788999999999999998
Q ss_pred CHHHHHHHHHHHH
Q 011841 434 DLAAGLRKFVKWY 446 (476)
Q Consensus 434 ~l~e~l~~~v~~~ 446 (476)
+|+++|+++++.|
T Consensus 273 ~~~~~l~~~~~~~ 285 (286)
T PF04321_consen 273 PWREGLEELVKQY 285 (286)
T ss_dssp BHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8999999999876
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=305.82 Aligned_cols=276 Identities=21% Similarity=0.254 Sum_probs=229.9
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLH 199 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 199 (476)
+||||||+||||++++++|+++|++|++++|. .+|+.|.+.+.+++++.++|+|||
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~------------------------~~d~~~~~~~~~~~~~~~~d~vi~ 56 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS------------------------QLDLTDPEALERLLRAIRPDAVVN 56 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc------------------------ccCCCCHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999999999999882 479999999999999988999999
Q ss_pred ccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 011841 200 LAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE 279 (476)
Q Consensus 200 ~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~ 279 (476)
+|+..........+...+++|+.++.+++++|++.+. +||++||.++|+.....+++|+++. .|.+.|+.+|.++|.
T Consensus 57 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~Ss~~vy~~~~~~~~~E~~~~-~~~~~Y~~~K~~~E~ 133 (287)
T TIGR01214 57 TAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHISTDYVFDGEGKRPYREDDAT-NPLNVYGQSKLAGEQ 133 (287)
T ss_pred CCccccccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeeeeecCCCCCCCCCCCCC-CCcchhhHHHHHHHH
Confidence 9998655444456778899999999999999998874 8999999999988777789998876 778899999999999
Q ss_pred HHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCcC
Q 011841 280 IAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKS 359 (476)
Q Consensus 280 ~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~ 359 (476)
+++.+ +++++++||+.||||+.. ..++..++..+..++++.+. +++.++++|++|+|++++.+++.+...
T Consensus 134 ~~~~~----~~~~~ilR~~~v~G~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~v~Dva~a~~~~~~~~~~~ 203 (287)
T TIGR01214 134 AIRAA----GPNALIVRTSWLYGGGGG-RNFVRTMLRLAGRGEELRVV-----DDQIGSPTYAKDLARVIAALLQRLARA 203 (287)
T ss_pred HHHHh----CCCeEEEEeeecccCCCC-CCHHHHHHHHhhcCCCceEe-----cCCCcCCcCHHHHHHHHHHHHhhccCC
Confidence 99874 789999999999999743 23455677777888887776 346789999999999999999876433
Q ss_pred CCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcccee------ec---CC-CCCCCCcccccHHHHHHhcCC
Q 011841 360 TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV------IR---MP-RNGDVPYTHANVSLAYKDFGY 429 (476)
Q Consensus 360 ~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~------~~---~~-~~~~~~~~~~d~~ka~~~LG~ 429 (476)
+ ++||+++++.+++.|+++.+.+.+|.+..... .. .+ ......+..+|++|++++|||
T Consensus 204 ~------------~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~ 271 (287)
T TIGR01214 204 R------------GVYHLANSGQCSWYEFAQAIFEEAGADGLLLHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGT 271 (287)
T ss_pred C------------CeEEEECCCCcCHHHHHHHHHHHhCcccccccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCC
Confidence 3 89999999999999999999999997653111 11 01 122335567999999999999
Q ss_pred CcccCHHHHHHHHHHH
Q 011841 430 KPTTDLAAGLRKFVKW 445 (476)
Q Consensus 430 ~p~~~l~e~l~~~v~~ 445 (476)
++ ++++++|.++++.
T Consensus 272 ~~-~~~~~~l~~~~~~ 286 (287)
T TIGR01214 272 PL-PHWREALRAYLQE 286 (287)
T ss_pred CC-ccHHHHHHHHHhh
Confidence 54 5999999988763
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=304.12 Aligned_cols=296 Identities=26% Similarity=0.327 Sum_probs=232.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||+++++.|+++|++|++++|...... .....+++++.+|+.|.+++.++++++ |+||
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------~~~~~~~~~~~~D~~~~~~l~~~~~~~--d~vi 69 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRR---------NLEGLDVEIVEGDLRDPASLRKAVAGC--RALF 69 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccc---------ccccCCceEEEeeCCCHHHHHHHHhCC--CEEE
Confidence 57999999999999999999999999999999654211 112337889999999999999999876 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC-CCCCCCCCCCCCCC--CCChHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL-NTQVPFSESHRTDQ--PASLYAATKK 275 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~-~~~~~~~E~~~~~~--p~~~Y~~sK~ 275 (476)
|+|+... ....+++..+++|+.++.+++++|++.+++ +||++||.++|+. ....+++|+.+... ..+.|+.+|.
T Consensus 70 ~~a~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~ 146 (328)
T TIGR03466 70 HVAADYR--LWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKF 146 (328)
T ss_pred Eeceecc--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHH
Confidence 9998632 234567889999999999999999998876 9999999999985 34457788766522 2468999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
++|.+++++..+++++++++||+.+||++.........++.....++.. .. .+...+|+|++|+|++++.++++
T Consensus 147 ~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~i~v~D~a~a~~~~~~~ 220 (328)
T TIGR03466 147 LAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLNGKMP-AY-----VDTGLNLVHVDDVAEGHLLALER 220 (328)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCCCcHHHHHHHHHcCCCc-ee-----eCCCcceEEHHHHHHHHHHHHhC
Confidence 9999999999888999999999999999765333333344444444422 22 12236899999999999999987
Q ss_pred cCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCC---------------CCCC-------
Q 011841 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR---------------NGDV------- 413 (476)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~---------------~~~~------- 413 (476)
+. . | +.||++ ++++++.|+++.+.+.+|.+......|... ....
T Consensus 221 ~~-~-~-----------~~~~~~-~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (328)
T TIGR03466 221 GR-I-G-----------ERYILG-GENLTLKQILDKLAEITGRPAPRVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGV 286 (328)
T ss_pred CC-C-C-----------ceEEec-CCCcCHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHH
Confidence 43 2 2 788885 588999999999999999865444333110 0111
Q ss_pred ----CcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHH
Q 011841 414 ----PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 449 (476)
Q Consensus 414 ----~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~ 449 (476)
....+|++|++++|||+|+ +++++|+++++||+++
T Consensus 287 ~~~~~~~~~d~~k~~~~lg~~p~-~~~~~i~~~~~~~~~~ 325 (328)
T TIGR03466 287 RMAKKKMFFSSAKAVRELGYRQR-PAREALRDAVEWFRAN 325 (328)
T ss_pred HHHhccCCCChHHHHHHcCCCCc-CHHHHHHHHHHHHHHh
Confidence 2456899999999999996 9999999999999875
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=291.02 Aligned_cols=275 Identities=23% Similarity=0.274 Sum_probs=245.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|||||++|++|.+|++.|. .+++|+.++|. .+|++|++.+.+++...+||+||
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~------------------------~~Ditd~~~v~~~i~~~~PDvVI 55 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRA------------------------ELDITDPDAVLEVIRETRPDVVI 55 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCc------------------------cccccChHHHHHHHHhhCCCEEE
Confidence 569999999999999999999 77999999872 18999999999999999999999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+|+...++.++.+++..+.+|..|+.+++++|++.|. ++||+||.+||.+....|+.|+|++ .|.+.||+||+++|
T Consensus 56 n~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga--~lVhiSTDyVFDG~~~~~Y~E~D~~-~P~nvYG~sKl~GE 132 (281)
T COG1091 56 NAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA--RLVHISTDYVFDGEKGGPYKETDTP-NPLNVYGRSKLAGE 132 (281)
T ss_pred ECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC--eEEEeecceEecCCCCCCCCCCCCC-CChhhhhHHHHHHH
Confidence 99999999999999999999999999999999999998 6999999999999988899999998 89999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
..++++ +-+.+|||.++|||..+ ..+...|++...+|+++.+. .++..+.+++.|+|+++..+++....
T Consensus 133 ~~v~~~----~~~~~I~Rtswv~g~~g--~nFv~tml~la~~~~~l~vv-----~Dq~gsPt~~~dlA~~i~~ll~~~~~ 201 (281)
T COG1091 133 EAVRAA----GPRHLILRTSWVYGEYG--NNFVKTMLRLAKEGKELKVV-----DDQYGSPTYTEDLADAILELLEKEKE 201 (281)
T ss_pred HHHHHh----CCCEEEEEeeeeecCCC--CCHHHHHHHHhhcCCceEEE-----CCeeeCCccHHHHHHHHHHHHhcccc
Confidence 999985 45689999999999865 45888899999999999999 79999999999999999999988765
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccce-eecC---CC-CCCCCcccccHHHHHHhcCCCccc
Q 011841 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH-VIRM---PR-NGDVPYTHANVSLAYKDFGYKPTT 433 (476)
Q Consensus 359 ~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~-~~~~---~~-~~~~~~~~~d~~ka~~~LG~~p~~ 433 (476)
. ++||+++...+||.|+++.+.+.++.+.... .... |. ..++.+..+++.|+.+.+|+.|.
T Consensus 202 ~-------------~~yH~~~~g~~Swydfa~~I~~~~~~~~~v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~- 267 (281)
T COG1091 202 G-------------GVYHLVNSGECSWYEFAKAIFEEAGVDGEVIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLP- 267 (281)
T ss_pred C-------------cEEEEeCCCcccHHHHHHHHHHHhCCCccccccccccccCccCCCCcccccchHHHHHHhCCCCc-
Confidence 4 6999999998999999999999998665322 2221 11 24566788999999999999988
Q ss_pred CHHHHHHHHHHHH
Q 011841 434 DLAAGLRKFVKWY 446 (476)
Q Consensus 434 ~l~e~l~~~v~~~ 446 (476)
.|+++++++++.+
T Consensus 268 ~w~~~l~~~~~~~ 280 (281)
T COG1091 268 EWREALKALLDEL 280 (281)
T ss_pred cHHHHHHHHHhhc
Confidence 8999999988753
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=289.09 Aligned_cols=304 Identities=23% Similarity=0.240 Sum_probs=232.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
++|+|+||||+||||+||++.|+++||.|++++|+.+.... .....++ ....+++++.+||.|++++.++++++ |
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~--~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc--d 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKK--TEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC--D 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhh--HHHHHhcccCcccceEEeccccccchHHHHHhCC--C
Confidence 67899999999999999999999999999999998764211 1111121 12335999999999999999999998 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCC-----CCCCCCCCCCCC-----C
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN-----TQVPFSESHRTD-----Q 265 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~-----~~~~~~E~~~~~-----~ 265 (476)
+|+|.|......... ...+.++.++.||.|++++|++...-+|||++||.++-..+ +...++|+.+.+ .
T Consensus 81 gVfH~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~ 159 (327)
T KOG1502|consen 81 GVFHTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRC 159 (327)
T ss_pred EEEEeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHh
Confidence 999999986654322 34479999999999999999998833499999997754322 334677776532 1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCC-cHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHH
Q 011841 266 PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (476)
....|..+|..+|+.+++++++.|++.+.+.|+.|+||...+.. .-..++..+++|..-.. .+....|+||+|
T Consensus 160 ~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~~~l~~i~G~~~~~------~n~~~~~VdVrD 233 (327)
T KOG1502|consen 160 KKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLNALLKLIKGLAETY------PNFWLAFVDVRD 233 (327)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCcccccchhHHHHHHHHhcccccC------CCCceeeEeHHH
Confidence 22579999999999999999999999999999999999876532 22345556677753322 233455999999
Q ss_pred HHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCC----CCCCcccccH
Q 011841 345 VVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN----GDVPYTHANV 420 (476)
Q Consensus 345 va~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~----~~~~~~~~d~ 420 (476)
||.+++.+++++... +.|.+.+.. +++.|+++++.+.+..-. +|.... .......++.
T Consensus 234 VA~AHv~a~E~~~a~-------------GRyic~~~~-~~~~ei~~~l~~~~P~~~----ip~~~~~~~~~~~~~~~~~~ 295 (327)
T KOG1502|consen 234 VALAHVLALEKPSAK-------------GRYICVGEV-VSIKEIADILRELFPDYP----IPKKNAEEHEGFLTSFKVSS 295 (327)
T ss_pred HHHHHHHHHcCcccC-------------ceEEEecCc-ccHHHHHHHHHHhCCCCC----CCCCCCcccccccccccccc
Confidence 999999999999887 677776644 669999999999998654 221111 1112235789
Q ss_pred HHHHHhcCCCcccCHHHHHHHHHHHHHHHc
Q 011841 421 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 421 ~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~ 450 (476)
+|+++..||+.. +++|.+.++++++++..
T Consensus 296 ~k~k~lg~~~~~-~l~e~~~dt~~sl~~~~ 324 (327)
T KOG1502|consen 296 EKLKSLGGFKFR-PLEETLSDTVESLREKG 324 (327)
T ss_pred HHHHhcccceec-ChHHHHHHHHHHHHHhc
Confidence 999875557776 99999999999998754
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=277.44 Aligned_cols=317 Identities=22% Similarity=0.293 Sum_probs=268.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHH-HHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRA-RQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~-~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
+|+.||||-||+-|.+|++.|+++||+|+++.|..+......-.. ........+++++.+||+|...+.++++.++||-
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~PdE 81 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDE 81 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCchh
Confidence 578999999999999999999999999999999876554432111 2223345569999999999999999999999999
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
|+|+|++..+..+.+.|..+.+++..|+.+|+++.+-.+. +.+|...||+..||...+.|.+|..|. .|.++|+++|+
T Consensus 82 IYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPF-yPrSPYAvAKl 160 (345)
T COG1089 82 IYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAKL 160 (345)
T ss_pred heeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCC-CCCCHHHHHHH
Confidence 9999999999999999999999999999999999998775 459999999999999999999999998 89999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHH---HHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHH
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFF---TKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~ 352 (476)
.+..+..+|++.||+-.+.=..++--+|..........+ ..+|..|..-.++- |+-+..+||-|+.|.+++++.+
T Consensus 161 Ya~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~l--GNldAkRDWG~A~DYVe~mwlm 238 (345)
T COG1089 161 YAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYL--GNLDAKRDWGHAKDYVEAMWLM 238 (345)
T ss_pred HHHheeeehHhhcCceeecceeecCCCCCCccceehHHHHHHHHHHHccccceEEe--ccccccccccchHHHHHHHHHH
Confidence 999999999999999888888888888865544443333 34455677666664 7889999999999999999999
Q ss_pred HhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccce----------------eec-CC---CCCC
Q 011841 353 LDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH----------------VIR-MP---RNGD 412 (476)
Q Consensus 353 l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~----------------~~~-~~---~~~~ 412 (476)
|+++.. ..|.|+.++..|++|++++..+.+|.+..+. .+. .| ++.+
T Consensus 239 LQq~~P--------------ddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaE 304 (345)
T COG1089 239 LQQEEP--------------DDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAE 304 (345)
T ss_pred HccCCC--------------CceEEecCceeeHHHHHHHHHHHcCceEEEeeccccccccccccCceeEEECccccCchh
Confidence 999874 7799999999999999999999999765432 111 11 2345
Q ss_pred CCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 413 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 413 ~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
......|.+||+++|||+|+++++|.+++|+++.++..+
T Consensus 305 V~~Llgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~~~ 343 (345)
T COG1089 305 VDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLEAAR 343 (345)
T ss_pred hhhhcCCHHHHHHHcCCccccCHHHHHHHHHHHHHHHhh
Confidence 666679999999999999999999999999999887644
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=291.75 Aligned_cols=277 Identities=19% Similarity=0.214 Sum_probs=219.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.++|+||||||+||||++++++|+++| ++|++++|..... ... .......++.++.+|+.|.+.+.++++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~----~~~-~~~~~~~~~~~v~~Dl~d~~~l~~~~~~i- 75 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQ----WEM-QQKFPAPCLRFFIGDVRDKERLTRALRGV- 75 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHH----HHH-HHHhCCCcEEEEEccCCCHHHHHHHHhcC-
Confidence 357899999999999999999999986 7899998854311 111 11122347899999999999999999875
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
|+|||+||.........++...+++|+.|+.+++++|++.+++ +||++||...+ .|.++|+.+
T Consensus 76 -D~Vih~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~SS~~~~---------------~p~~~Y~~s 138 (324)
T TIGR03589 76 -DYVVHAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALSTDKAA---------------NPINLYGAT 138 (324)
T ss_pred -CEEEECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeCCCCC---------------CCCCHHHHH
Confidence 9999999986555556677889999999999999999998876 99999996421 456789999
Q ss_pred HHHHHHHHHHHH---HHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCC-ceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 274 KKAGEEIAHTYN---HIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK-TIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 274 K~~~E~~~~~~~---~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
|.++|.+++.++ ..+|++++++|||+||||+. .+++.+...+..++ ++++. ++.+.++|+|++|+|+++
T Consensus 139 K~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~---~~i~~~~~~~~~~~~~~~i~----~~~~~r~~i~v~D~a~a~ 211 (324)
T TIGR03589 139 KLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG---SVVPFFKSLKEEGVTELPIT----DPRMTRFWITLEQGVNFV 211 (324)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEEeecceeCCCC---CcHHHHHHHHHhCCCCeeeC----CCCceEeeEEHHHHHHHH
Confidence 999999998754 34689999999999999964 35667777777776 56664 467889999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCC-CcccccHHHHHHhcC
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV-PYTHANVSLAYKDFG 428 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~-~~~~~d~~ka~~~LG 428 (476)
+.++++.. . + ++|+ +.+..+++.|+++.+.+..+ +...+ .+.++. ....+|.+|++++||
T Consensus 212 ~~al~~~~-~-~-----------~~~~-~~~~~~sv~el~~~i~~~~~----~~~~~-~~~g~~~~~~~~~~~~~~~~lg 272 (324)
T TIGR03589 212 LKSLERML-G-G-----------EIFV-PKIPSMKITDLAEAMAPECP----HKIVG-IRPGEKLHEVMITEDDARHTYE 272 (324)
T ss_pred HHHHhhCC-C-C-----------CEEc-cCCCcEEHHHHHHHHHhhCC----eeEeC-CCCCchhHhhhcChhhhhhhcC
Confidence 99998642 1 1 7784 66677999999999998653 22222 234443 336689999999999
Q ss_pred CCcccCHHHHHHH
Q 011841 429 YKPTTDLAAGLRK 441 (476)
Q Consensus 429 ~~p~~~l~e~l~~ 441 (476)
|+|+++++++++.
T Consensus 273 ~~~~~~l~~~~~~ 285 (324)
T TIGR03589 273 LGDYYAILPSISF 285 (324)
T ss_pred CCCeEEEcccccc
Confidence 9999999999963
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=278.28 Aligned_cols=233 Identities=33% Similarity=0.507 Sum_probs=207.6
Q ss_pred EEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEEEc
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHL 200 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~ 200 (476)
||||||+||||++++++|+++|+.|+.+.|....... ... ..+++++.+|+.|.+.+.++++...+|+|||+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~----~~~----~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~ 72 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESF----EEK----KLNVEFVIGDLTDKEQLEKLLEKANIDVVIHL 72 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHH----HHH----HTTEEEEESETTSHHHHHHHHHHHTESEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccc----ccc----cceEEEEEeeccccccccccccccCceEEEEe
Confidence 7999999999999999999999999999986542111 010 11899999999999999999999899999999
Q ss_pred cccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 011841 201 AAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI 280 (476)
Q Consensus 201 Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~ 280 (476)
|+.........++...++.|+.++.+++++|++.+++ +||++||..+|+.....+++|+++. .|.++|+.+|...|++
T Consensus 73 a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~sS~~~y~~~~~~~~~e~~~~-~~~~~Y~~~K~~~e~~ 150 (236)
T PF01370_consen 73 AAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVK-RFIFLSSASVYGDPDGEPIDEDSPI-NPLSPYGASKRAAEEL 150 (236)
T ss_dssp BSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTS-EEEEEEEGGGGTSSSSSSBETTSGC-CHSSHHHHHHHHHHHH
T ss_pred ecccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 9986544455788899999999999999999999985 9999999999999977789999988 8999999999999999
Q ss_pred HHHHHHHhCCcEEEEeeCcccCCC---CCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 281 AHTYNHIYGLALTGLRFFTVYGPW---GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 281 ~~~~~~~~gi~~~ilRp~~v~G~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
++.+.+.++++++++||+.||||+ .....++..++..+.+++++.++ +++++.++|+|++|+|++++.+++++.
T Consensus 151 ~~~~~~~~~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~D~a~~~~~~~~~~~ 227 (236)
T PF01370_consen 151 LRDYAKKYGLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQALKGKPIKIP---GDGSQVRDFIHVDDLAEAIVAALENPK 227 (236)
T ss_dssp HHHHHHHHTSEEEEEEESEEESTTSSSSSTSSHHHHHHHHHHTTSSEEEE---STSSCEEEEEEHHHHHHHHHHHHHHSC
T ss_pred ccccccccccccccccccccccccccccccccccchhhHHhhcCCccccc---CCCCCccceEEHHHHHHHHHHHHhCCC
Confidence 999999999999999999999998 55667888999999999999988 788999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCceEEEEc
Q 011841 358 KSTGSGGKKRGPAQLRVYNLG 378 (476)
Q Consensus 358 ~~~g~~~~~~~~~~~~i~ni~ 378 (476)
..+ ++|||+
T Consensus 228 ~~~------------~~yNig 236 (236)
T PF01370_consen 228 AAG------------GIYNIG 236 (236)
T ss_dssp TTT------------EEEEES
T ss_pred CCC------------CEEEeC
Confidence 333 999986
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=297.32 Aligned_cols=292 Identities=17% Similarity=0.118 Sum_probs=218.5
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-------CCceEEEEeecCCHHHHH
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-------KHQVFIVEGDLNDAPLLT 186 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-------~~~v~~~~~Dl~d~~~l~ 186 (476)
...++|+||||||+||||++++++|+++|++|++++|+.+. .... ..... ..+++++.+|++|.+++.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~----~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~ 123 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQED----KEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLH 123 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHH-HHHhhhccccccCCceEEEEcCCCCHHHHH
Confidence 34678899999999999999999999999999998885321 1111 11100 125889999999999999
Q ss_pred HhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCc--cccCCC--CC--CCCCC
Q 011841 187 KLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSS--SVYGLN--TQ--VPFSE 259 (476)
Q Consensus 187 ~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~--~vyg~~--~~--~~~~E 259 (476)
++++++ |+|||+|+...............++|+.++.+++++|++. +++ +||++||. .+||.. .. ..++|
T Consensus 124 ~~i~~~--d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E 200 (367)
T PLN02686 124 EAFDGC--AGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDE 200 (367)
T ss_pred HHHHhc--cEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCC
Confidence 999976 9999999975432211122456788999999999999986 676 99999996 478642 11 23555
Q ss_pred CCC-----CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 260 SHR-----TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 260 ~~~-----~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
+++ +..|.+.|+.+|.++|.+++.+.+.+|+++++|||++||||+....... ....++.+. +.++ +++
T Consensus 201 ~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~~~--~~~~~~~g~-~~~~---g~g- 273 (367)
T PLN02686 201 ESWSDESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRNST--ATIAYLKGA-QEML---ADG- 273 (367)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCCCh--hHHHHhcCC-CccC---CCC-
Confidence 432 2246678999999999999999888899999999999999975432211 122345554 4455 333
Q ss_pred eeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV 413 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~ 413 (476)
.++|+||+|+|++++.+++.+. ...+ ++| +++++.+++.|+++.+.+.+|.+......+....++.
T Consensus 274 -~~~~v~V~Dva~A~~~al~~~~~~~~~-----------~~y-i~~g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~d~ 340 (367)
T PLN02686 274 -LLATADVERLAEAHVCVYEAMGNKTAF-----------GRY-ICFDHVVSREDEAEELARQIGLPINKIAGNSSSDDTP 340 (367)
T ss_pred -CcCeEEHHHHHHHHHHHHhccCCCCCC-----------CcE-EEeCCCccHHHHHHHHHHHcCCCCCcCCCchhhcCCc
Confidence 3579999999999999998641 1111 678 7888999999999999999998765544332225788
Q ss_pred CcccccHHHHHHhcCCCccc
Q 011841 414 PYTHANVSLAYKDFGYKPTT 433 (476)
Q Consensus 414 ~~~~~d~~ka~~~LG~~p~~ 433 (476)
..+.+|++|++++|||+|+-
T Consensus 341 ~~~~~d~~kl~~~l~~~~~~ 360 (367)
T PLN02686 341 ARFELSNKKLSRLMSRTRRC 360 (367)
T ss_pred ccccccHHHHHHHHHHhhhc
Confidence 88999999999999999863
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=284.81 Aligned_cols=258 Identities=27% Similarity=0.295 Sum_probs=203.0
Q ss_pred EEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEEE
Q 011841 122 LVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLH 199 (476)
Q Consensus 122 LVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 199 (476)
|||||+||||++|+++|+++| ++|+++++...... ...........++++|++|.+++.++++++ |+|||
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~------~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~--d~V~H 72 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKF------LKDLQKSGVKEYIQGDITDPESLEEALEGV--DVVFH 72 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEccccccccc------chhhhcccceeEEEeccccHHHHHHHhcCC--ceEEE
Confidence 699999999999999999999 79999997543211 111122223449999999999999999998 99999
Q ss_pred ccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCC-CCCC---CCCCCCC-CCCChHHHHH
Q 011841 200 LAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVPF---SESHRTD-QPASLYAATK 274 (476)
Q Consensus 200 ~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~-~~~~---~E~~~~~-~p~~~Y~~sK 274 (476)
+|+..... .....+.++++|+.||++|+++|++.+++ +|||+||.++++.+. ..++ +|+.+.. .+.+.|+.||
T Consensus 73 ~Aa~~~~~-~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk-rlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK 150 (280)
T PF01073_consen 73 TAAPVPPW-GDYPPEEYYKVNVDGTRNVLEAARKAGVK-RLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESK 150 (280)
T ss_pred eCcccccc-CcccHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHH
Confidence 99985442 23567789999999999999999999997 999999999988622 2232 4444322 3677999999
Q ss_pred HHHHHHHHHHHH---Hh--CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 275 KAGEEIAHTYNH---IY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 275 ~~~E~~~~~~~~---~~--gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
..+|+++.+... +. .+..++|||..||||++.. ....+...+..|...... +++....+++||+|+|.++
T Consensus 151 ~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~--~~~~~~~~~~~g~~~~~~---g~~~~~~~~vyV~NvA~ah 225 (280)
T PF01073_consen 151 ALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQR--LVPRLVKMVRSGLFLFQI---GDGNNLFDFVYVENVAHAH 225 (280)
T ss_pred HHHHHHHHhhcccccccccceeEEEEeccEEeCccccc--ccchhhHHHHhcccceee---cCCCceECcEeHHHHHHHH
Confidence 999999999876 22 4999999999999997653 344556666667566555 6678889999999999999
Q ss_pred HHHHhhcCcC---CCCCCCCCCCCCceEEEEcCCCccc-HHHHHHHHHHHhCCCccc
Q 011841 350 VGALDTAGKS---TGSGGKKRGPAQLRVYNLGNTSPVP-VGRLVSILENLLNTKAKK 402 (476)
Q Consensus 350 ~~~l~~~~~~---~g~~~~~~~~~~~~i~ni~~~~~vt-~~el~~~l~~~~g~~~~~ 402 (476)
+.+++.-... ...+| +.|+|+++++++ +.|++..+.+.+|.+.+.
T Consensus 226 vlA~~~L~~~~~~~~~~G--------~~y~itd~~p~~~~~~f~~~~~~~~G~~~~~ 274 (280)
T PF01073_consen 226 VLAAQALLEPGKPERVAG--------QAYFITDGEPVPSFWDFMRPLWEALGYPPPK 274 (280)
T ss_pred HHHHHHhccccccccCCC--------cEEEEECCCccCcHHHHHHHHHHHCCCCCCc
Confidence 9887653322 11122 999999999999 999999999999988765
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=277.47 Aligned_cols=276 Identities=18% Similarity=0.193 Sum_probs=213.4
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|+|||||||||++++++|+++||+|++++|+.+. .......+++++.+|+.|++++.++++++ |+||
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~---------~~~l~~~~v~~v~~Dl~d~~~l~~al~g~--d~Vi 69 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRK---------ASFLKEWGAELVYGDLSLPETLPPSFKGV--TAII 69 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHH---------hhhHhhcCCEEEECCCCCHHHHHHHHCCC--CEEE
Confidence 689999999999999999999999999999995321 11122347999999999999999999987 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+++.. ..++..+.++|+.++.+++++|++++++ |||++||..++. .+..+|..+|.++|
T Consensus 70 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~Ss~~~~~--------------~~~~~~~~~K~~~e 129 (317)
T CHL00194 70 DASTSR-----PSDLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFSILNAEQ--------------YPYIPLMKLKSDIE 129 (317)
T ss_pred ECCCCC-----CCCccchhhhhHHHHHHHHHHHHHcCCC-EEEEeccccccc--------------cCCChHHHHHHHHH
Confidence 998642 2345567889999999999999999997 999999864321 12356889999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
.++++ ++++++++||+.+|+.. +..+...++.++++.+. ++.+.++|+|++|+|++++.+++++..
T Consensus 130 ~~l~~----~~l~~tilRp~~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~~~~~~l~~~~~ 195 (317)
T CHL00194 130 QKLKK----SGIPYTIFRLAGFFQGL------ISQYAIPILEKQPIWIT----NESTPISYIDTQDAAKFCLKSLSLPET 195 (317)
T ss_pred HHHHH----cCCCeEEEeecHHhhhh------hhhhhhhhccCCceEec----CCCCccCccCHHHHHHHHHHHhcCccc
Confidence 88765 69999999999988641 11222233445555443 356678999999999999999987654
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCC--------------------------CC
Q 011841 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN--------------------------GD 412 (476)
Q Consensus 359 ~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~--------------------------~~ 412 (476)
.+ ++||+++++.+|+.|+++.+.+.+|++..+...|.... ..
T Consensus 196 ~~------------~~~ni~g~~~~s~~el~~~~~~~~g~~~~~~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 263 (317)
T CHL00194 196 KN------------KTFPLVGPKSWNSSEIISLCEQLSGQKAKISRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNT 263 (317)
T ss_pred cC------------cEEEecCCCccCHHHHHHHHHHHhCCCCeEEeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhc
Confidence 43 89999999999999999999999999876665552210 01
Q ss_pred CCcccccHHHHHHhcCCCcc--cCHHHHHHHHHHHHHHHcC
Q 011841 413 VPYTHANVSLAYKDFGYKPT--TDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 413 ~~~~~~d~~ka~~~LG~~p~--~~l~e~l~~~v~~~~~~~~ 451 (476)
......+.+++++.||+.|. .++++.|++.++..++..+
T Consensus 264 ~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~ 304 (317)
T CHL00194 264 SNNFSSSMAELYKIFKIDPNELISLEDYFQEYFERILKRLK 304 (317)
T ss_pred CCCcCCCHHHHHHHhCCChhhhhhHHHHHHHHHHHHHHHHH
Confidence 11233567788999999983 5799999998887777544
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=272.91 Aligned_cols=317 Identities=22% Similarity=0.261 Sum_probs=249.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
..+.+|+||||+||+|++|+++|++++ .+|+++|.......- ....... ....+.++.+|+.|.-++.++++++
T Consensus 2 ~~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~--~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~- 77 (361)
T KOG1430|consen 2 EKKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNL--PAELTGF-RSGRVTVILGDLLDANSISNAFQGA- 77 (361)
T ss_pred CcCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCcccccc--chhhhcc-cCCceeEEecchhhhhhhhhhccCc-
Confidence 356799999999999999999999998 799999975531111 1111111 3568999999999999999999875
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCC-CCCCCC-CCCCChHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPF-SESHRT-DQPASLYA 271 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~-~E~~~~-~~p~~~Y~ 271 (476)
.|+|+|+....+....+++.++++|+.||.+++++|++.+++ ++||+||.+|+........ +|+.+. ....++|+
T Consensus 78 --~Vvh~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~-~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~Y~ 154 (361)
T KOG1430|consen 78 --VVVHCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK-RLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPYG 154 (361)
T ss_pred --eEEEeccccCccccccchhhheeecchhHHHHHHHHHHhCCC-EEEEecCceEEeCCeecccCCCCCCCccccccccc
Confidence 777777776666667789999999999999999999999997 9999999998876655333 333332 23346999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHH
Q 011841 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~ 351 (476)
.+|+.+|+++.+.+...++..++|||..||||++.. ..+.+...+..|+.+... +++....+|++++.|+.+.+.
T Consensus 155 ~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~~--~~~~i~~~~~~g~~~f~~---g~~~~~~~~~~~~Nva~ahil 229 (361)
T KOG1430|consen 155 ESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDKR--LLPKIVEALKNGGFLFKI---GDGENLNDFTYGENVAWAHIL 229 (361)
T ss_pred hHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCcc--ccHHHHHHHHccCceEEe---eccccccceEEechhHHHHHH
Confidence 999999999999987668999999999999998764 556788888889988887 567888999999999999887
Q ss_pred HHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccc-eeecCC-------------------CC
Q 011841 352 ALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK-HVIRMP-------------------RN 410 (476)
Q Consensus 352 ~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~-~~~~~~-------------------~~ 410 (476)
+...-. .....+| ++|+|+++.++..-++...+.+.+|...+. ...|.. .+
T Consensus 230 A~~aL~~~~~~~~G--------q~yfI~d~~p~~~~~~~~~l~~~lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p 301 (361)
T KOG1430|consen 230 AARALLDKSPSVNG--------QFYFITDDTPVRFFDFLSPLVKALGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQP 301 (361)
T ss_pred HHHHHHhcCCccCc--------eEEEEeCCCcchhhHHHHHHHHhcCCCCCceeecchHHHHHHHHHHHHHHHhccCCCC
Confidence 765543 2222233 999999999999999999999999988763 222211 00
Q ss_pred C--------CCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 411 G--------DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 411 ~--------~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
. -.....++++||+++|||+|.++++|++.+++.|+......
T Consensus 302 ~lt~~~v~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~~~~~~~~ 351 (361)
T KOG1430|consen 302 ILTRFRVALLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHWVASESDS 351 (361)
T ss_pred CcChhheeeeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHHHhhhhhc
Confidence 0 01234689999999999999999999999999998776654
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-32 Score=244.26 Aligned_cols=293 Identities=19% Similarity=0.197 Sum_probs=243.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|+|||||++|-+|++|.+.+.++|. +=.++.- .-.+||++.++.+++|+..+|.+
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~-----------------------skd~DLt~~a~t~~lF~~ekPth 58 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIG-----------------------SKDADLTNLADTRALFESEKPTH 58 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEec-----------------------cccccccchHHHHHHHhccCCce
Confidence 7899999999999999999999975 2111111 12489999999999999999999
Q ss_pred EEEccccCCh-hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCC----CCCCCCChHH
Q 011841 197 VLHLAAQAGV-RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESH----RTDQPASLYA 271 (476)
Q Consensus 197 Vi~~Ag~~~~-~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~----~~~~p~~~Y~ 271 (476)
|||+|+..+. -.....+.+++..|++-..|++..|-+.|++ ++|++-|.++|......|++|.. |+.+..-.|+
T Consensus 59 VIhlAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~-K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYs 137 (315)
T KOG1431|consen 59 VIHLAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVK-KVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYS 137 (315)
T ss_pred eeehHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchh-hhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHH
Confidence 9999998654 3344566789999999999999999999997 99999999999988888998874 4445566899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCC----cHHHHHHH----HHcCC-ceEEEeeCCCCceeEeceeH
Q 011841 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM----AYFFFTKD----ILQGK-TIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~----~~~~~~~~----~~~g~-~~~~~~~~~~~~~~~~~v~v 342 (476)
.+|+.+.-..+.|..++|-.++.+-|.+||||.++.+. .++.++++ -..|. ++.++ |+|...|.|+|.
T Consensus 138 yAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnpe~sHVlPali~r~h~ak~~gtd~~~Vw---GsG~PlRqFiys 214 (315)
T KOG1431|consen 138 YAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNPENSHVLPALIHRFHEAKRNGTDELTVW---GSGSPLRQFIYS 214 (315)
T ss_pred HHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCcccccchHHHHHHHHHHHhcCCceEEEe---cCCChHHHHhhH
Confidence 99999888889999999999999999999999875432 23444433 34455 77888 889999999999
Q ss_pred HHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC--cccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccH
Q 011841 343 DDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS--PVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANV 420 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~--~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~ 420 (476)
+|+|++++.+|.+-+.- +-++++.++ .||++|+++.+.++++.+.+..+... ..+......+++
T Consensus 215 ~DLA~l~i~vlr~Y~~v-------------Epiils~ge~~EVtI~e~aeaV~ea~~F~G~l~~Dtt-K~DGq~kKtasn 280 (315)
T KOG1431|consen 215 DDLADLFIWVLREYEGV-------------EPIILSVGESDEVTIREAAEAVVEAVDFTGKLVWDTT-KSDGQFKKTASN 280 (315)
T ss_pred hHHHHHHHHHHHhhcCc-------------cceEeccCccceeEHHHHHHHHHHHhCCCceEEeecc-CCCCCcccccch
Confidence 99999999999987765 567888877 89999999999999999887776553 344555677999
Q ss_pred HHHHHhcCCCcccC-HHHHHHHHHHHHHHHcCCC
Q 011841 421 SLAYKDFGYKPTTD-LAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 421 ~ka~~~LG~~p~~~-l~e~l~~~v~~~~~~~~~~ 453 (476)
+|++. |+|.|+++ |+++|.+.++||.++++..
T Consensus 281 sKL~s-l~pd~~ft~l~~ai~~t~~Wy~~Ny~qa 313 (315)
T KOG1431|consen 281 SKLRS-LLPDFKFTPLEQAISETVQWYLDNYEQA 313 (315)
T ss_pred HHHHH-hCCCcccChHHHHHHHHHHHHHHhHHhh
Confidence 99976 99999987 9999999999999999754
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=292.65 Aligned_cols=260 Identities=19% Similarity=0.226 Sum_probs=200.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|+||||+||||++++++|+++|++|++++|.... .. ..++.++.+|+.|.+.+.++++++ |+||
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~-----------~~-~~~v~~v~gDL~D~~~l~~al~~v--D~VV 66 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPD-----------SW-PSSADFIAADIRDATAVESAMTGA--DVVA 66 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchh-----------hc-ccCceEEEeeCCCHHHHHHHHhCC--CEEE
Confidence 689999999999999999999999999999985321 01 126889999999999999999876 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+|+.... .+++|+.++.+++++|++.+++ +||++||.. |.++|
T Consensus 67 HlAa~~~~---------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~--------------------------K~aaE 110 (854)
T PRK05865 67 HCAWVRGR---------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH--------------------------QPRVE 110 (854)
T ss_pred ECCCcccc---------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH--------------------------HHHHH
Confidence 99986321 4678999999999999999986 999999843 78888
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
+++.+ ++++++++||++||||+. ..++..+.. ..++. .+++...++|+|++|+|++++.+++++..
T Consensus 111 ~ll~~----~gl~~vILRp~~VYGP~~------~~~i~~ll~---~~v~~-~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~ 176 (854)
T PRK05865 111 QMLAD----CGLEWVAVRCALIFGRNV------DNWVQRLFA---LPVLP-AGYADRVVQVVHSDDAQRLLVRALLDTVI 176 (854)
T ss_pred HHHHH----cCCCEEEEEeceEeCCCh------HHHHHHHhc---Cceec-cCCCCceEeeeeHHHHHHHHHHHHhCCCc
Confidence 87754 699999999999999962 223333332 22221 14456678999999999999999976543
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhC---CCccceeecCCC-CCCCCcccccHHHHHHhcCCCcccC
Q 011841 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN---TKAKKHVIRMPR-NGDVPYTHANVSLAYKDFGYKPTTD 434 (476)
Q Consensus 359 ~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g---~~~~~~~~~~~~-~~~~~~~~~d~~ka~~~LG~~p~~~ 434 (476)
.+ ++|||++++.+|+.|+++.+.+... .+......+... ........+|++|++++|||+|+++
T Consensus 177 ~g------------gvyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~s 244 (854)
T PRK05865 177 DS------------GPVNLAAPGELTFRRIAAALGRPMVPIGSPVLRRVTSFAELELLHSAPLMDVTLLRDRWGFQPAWN 244 (854)
T ss_pred CC------------CeEEEECCCcccHHHHHHHHhhhhccCCchhhhhccchhhhhcccCCccCCHHHHHHHhCCCCCCC
Confidence 32 7999999999999999999987542 111111100000 0111234689999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCC
Q 011841 435 LAAGLRKFVKWYVSYYGIQP 454 (476)
Q Consensus 435 l~e~l~~~v~~~~~~~~~~~ 454 (476)
++++|+++++||+.....+.
T Consensus 245 LeeGL~dti~~~r~ri~~~~ 264 (854)
T PRK05865 245 AEECLEDFTLAVRGRIGLGK 264 (854)
T ss_pred HHHHHHHHHHHHHhhccccc
Confidence 99999999999998776653
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=260.56 Aligned_cols=274 Identities=15% Similarity=0.197 Sum_probs=207.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
..|+||||||+||||++|+++|+++|++|+... .|+.|.+.+...++..++|+
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~---------------------------~~~~~~~~v~~~l~~~~~D~ 60 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS---------------------------GRLENRASLEADIDAVKPTH 60 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEec---------------------------CccCCHHHHHHHHHhcCCCE
Confidence 458999999999999999999999999987532 34566677777777778899
Q ss_pred EEEccccCCh---hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCC------CCCCCCCCCCCCCC
Q 011841 197 VLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT------QVPFSESHRTDQPA 267 (476)
Q Consensus 197 Vi~~Ag~~~~---~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~------~~~~~E~~~~~~p~ 267 (476)
|||+||.... ++...++..++++|+.++.+|+++|++.+++ ++++||.++|+... ..+++|++++..+.
T Consensus 61 ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~--~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~ 138 (298)
T PLN02778 61 VFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV--LTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTG 138 (298)
T ss_pred EEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEecceEeCCCCCCCcccCCCCCcCCCCCCCC
Confidence 9999998642 3456788999999999999999999999874 67778888886432 22578888775666
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHH
Q 011841 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (476)
+.|+.+|+++|.+++.+.+ ..++|+..++|++.. ....|+..++.++++... + .+|+|++|+++
T Consensus 139 s~Yg~sK~~~E~~~~~y~~-----~~~lr~~~~~~~~~~---~~~~fi~~~~~~~~~~~~-----~---~s~~yv~D~v~ 202 (298)
T PLN02778 139 SFYSKTKAMVEELLKNYEN-----VCTLRVRMPISSDLS---NPRNFITKITRYEKVVNI-----P---NSMTILDELLP 202 (298)
T ss_pred CchHHHHHHHHHHHHHhhc-----cEEeeecccCCcccc---cHHHHHHHHHcCCCeeEc-----C---CCCEEHHHHHH
Confidence 8999999999999998753 568898888886422 223467888888776554 1 26999999999
Q ss_pred HHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcc---ceeecCCCC--CCCCcccccHHH
Q 011841 348 GCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK---KHVIRMPRN--GDVPYTHANVSL 422 (476)
Q Consensus 348 a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~---~~~~~~~~~--~~~~~~~~d~~k 422 (476)
+++.+++... . ++||++++..+++.|+++++.+++|.+.. +...+.... .+.....+|++|
T Consensus 203 al~~~l~~~~--~------------g~yNigs~~~iS~~el~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k 268 (298)
T PLN02778 203 ISIEMAKRNL--T------------GIYNFTNPGVVSHNEILEMYRDYIDPSFTWKNFTLEEQAKVIVAPRSNNELDTTK 268 (298)
T ss_pred HHHHHHhCCC--C------------CeEEeCCCCcccHHHHHHHHHHHhCCCceeccccHHHHHHHHhCCCccccccHHH
Confidence 9999986532 2 79999999999999999999999996522 111111100 011122699999
Q ss_pred HHHhcCCCcccCHHHHHHHHHHHHHHHc
Q 011841 423 AYKDFGYKPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 423 a~~~LG~~p~~~l~e~l~~~v~~~~~~~ 450 (476)
+++.++=.+. ..+++++..++..+...
T Consensus 269 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 295 (298)
T PLN02778 269 LKREFPELLP-IKESLIKYVFEPNKKTK 295 (298)
T ss_pred HHHhcccccc-hHHHHHHHHHHHHHhhh
Confidence 9998886555 57788888777775443
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-31 Score=261.32 Aligned_cols=277 Identities=21% Similarity=0.165 Sum_probs=200.7
Q ss_pred EEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEEEc
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHL 200 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~ 200 (476)
||||||+||||+++++.|+++|++|++++|+........ ... ..|+.+ +.+.+.+.++ |+|||+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---------~~~----~~~~~~-~~~~~~~~~~--D~Vvh~ 64 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK---------WEG----YKPWAP-LAESEALEGA--DAVINL 64 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc---------cee----eecccc-cchhhhcCCC--CEEEEC
Confidence 699999999999999999999999999999765332110 001 112222 3344556655 999999
Q ss_pred cccCCh--hhhhcChHHHHHHHHHHHHHHHHHHHhcCCC-CeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011841 201 AAQAGV--RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ-PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 201 Ag~~~~--~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
||.... ++....+..+++.|+.++.+|+++|++.+++ .+||+.|+.++||.....+++|+++. .+.+.|+..+...
T Consensus 65 a~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~-~~~~~~~~~~~~~ 143 (292)
T TIGR01777 65 AGEPIADKRWTEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSP-AGDDFLAELCRDW 143 (292)
T ss_pred CCCCcccccCCHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCC-CCCChHHHHHHHH
Confidence 997432 2233455678899999999999999999874 36777788889997766688888754 5566778788788
Q ss_pred HHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
|..+..+. +.+++++++||+.||||... ....+...+...... .+ +++++.++|+|++|+|+++..+++++.
T Consensus 144 e~~~~~~~-~~~~~~~ilR~~~v~G~~~~---~~~~~~~~~~~~~~~-~~---g~~~~~~~~i~v~Dva~~i~~~l~~~~ 215 (292)
T TIGR01777 144 EEAAQAAE-DLGTRVVLLRTGIVLGPKGG---ALAKMLPPFRLGLGG-PL---GSGRQWFSWIHIEDLVQLILFALENAS 215 (292)
T ss_pred HHHhhhch-hcCCceEEEeeeeEECCCcc---hhHHHHHHHhcCccc-cc---CCCCcccccEeHHHHHHHHHHHhcCcc
Confidence 87766543 45899999999999999642 233333222222111 12 567899999999999999999998754
Q ss_pred cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCC-----------CCCcccccHHHHHHh
Q 011841 358 KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG-----------DVPYTHANVSLAYKD 426 (476)
Q Consensus 358 ~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~-----------~~~~~~~d~~ka~~~ 426 (476)
.. ++||+++++++|+.|+++.+.+.+|.+... +.|... -......+++|+++
T Consensus 216 ~~-------------g~~~~~~~~~~s~~di~~~i~~~~g~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 278 (292)
T TIGR01777 216 IS-------------GPVNATAPEPVRNKEFAKALARALHRPAFF---PVPAFVLRALLGEMADLLLKGQRVLPEKLLE- 278 (292)
T ss_pred cC-------------CceEecCCCccCHHHHHHHHHHHhCCCCcC---cCCHHHHHHHhchhhHHHhCCcccccHHHHh-
Confidence 32 789999999999999999999999976422 233211 01234567888875
Q ss_pred cCCCccc-CHHHHH
Q 011841 427 FGYKPTT-DLAAGL 439 (476)
Q Consensus 427 LG~~p~~-~l~e~l 439 (476)
+||+|.+ +++|+|
T Consensus 279 ~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 279 AGFQFQYPDLDEAL 292 (292)
T ss_pred cCCeeeCcChhhcC
Confidence 9999999 588864
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=257.69 Aligned_cols=281 Identities=16% Similarity=0.104 Sum_probs=200.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..+++||||||+||||++++++|+++||+|++++|+.+... ......... ...+++++.+|++|.+.+.+++.++
T Consensus 4 ~~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~--~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~-- 79 (297)
T PLN02583 4 ESSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETE--IEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGC-- 79 (297)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhh--HHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCC--
Confidence 34679999999999999999999999999999998532111 111111111 1246889999999999999999887
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCCC-----CCCCCCCCCCCC----
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLN-----TQVPFSESHRTD---- 264 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~~-----~~~~~~E~~~~~---- 264 (476)
|.|+|.++..... ..+.+.++++|+.|+.+++++|.+. +++ +||++||.++++.. ...+++|+++..
T Consensus 80 d~v~~~~~~~~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~~v~-riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~ 156 (297)
T PLN02583 80 SGLFCCFDPPSDY--PSYDEKMVDVEVRAAHNVLEACAQTDTIE-KVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFC 156 (297)
T ss_pred CEEEEeCccCCcc--cccHHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEecchHheecccccCCCCCCCCcccCCCHHHH
Confidence 9999987653211 1245788999999999999999886 454 99999998764311 123567765431
Q ss_pred -CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 265 -QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 265 -~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
.+...|+.+|..+|++++++.++.|+++++|||++||||+..... ..+.+.. ..+ +...++|+||+
T Consensus 157 ~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~~-------~~~~~~~-~~~-----~~~~~~~v~V~ 223 (297)
T PLN02583 157 RKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQHN-------PYLKGAA-QMY-----ENGVLVTVDVN 223 (297)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCch-------hhhcCCc-ccC-----cccCcceEEHH
Confidence 112379999999999999998888999999999999999764321 1223322 222 22346799999
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHH
Q 011841 344 DVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLA 423 (476)
Q Consensus 344 Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka 423 (476)
|+|++++.+++.+... +.|+++++....+.++++++.+.++.-....... ....+.....++++|+
T Consensus 224 Dva~a~~~al~~~~~~-------------~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~k~ 289 (297)
T PLN02583 224 FLVDAHIRAFEDVSSY-------------GRYLCFNHIVNTEEDAVKLAQMLSPLIPSPPPYE-MQGSEVYQQRIRNKKL 289 (297)
T ss_pred HHHHHHHHHhcCcccC-------------CcEEEecCCCccHHHHHHHHHHhCCCCCCCCccc-ccCCCccccccChHHH
Confidence 9999999999866443 6698988776667899999999987431111001 0012223456888888
Q ss_pred HHhcCCCc
Q 011841 424 YKDFGYKP 431 (476)
Q Consensus 424 ~~~LG~~p 431 (476)
++ |||+.
T Consensus 290 ~~-l~~~~ 296 (297)
T PLN02583 290 NK-LMEDF 296 (297)
T ss_pred HH-hCccc
Confidence 65 99874
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-30 Score=268.00 Aligned_cols=266 Identities=21% Similarity=0.258 Sum_probs=199.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC---CeEEEEeCCCCCCCchHH---HHHHh-h--------------hcCCceEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG---DGVLGLDNFNSYYDPSLK---RARQK-L--------------LQKHQVFI 174 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G---~~V~~~~R~~~~~~~~~~---~~~~~-~--------------~~~~~v~~ 174 (476)
.++|+|||||||||||++|++.|++.+ .+|+++.|.......... ..... . ....++++
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~ 88 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP 88 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence 467899999999999999999999865 368999997764332211 11000 0 01258999
Q ss_pred EEeecC-------CHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCc
Q 011841 175 VEGDLN-------DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSS 246 (476)
Q Consensus 175 ~~~Dl~-------d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~ 246 (476)
+.+|++ |.+.++++++++ |+|||+|+..... .+++...++|+.|+.+|+++|++. +++ +||++||+
T Consensus 89 i~GDl~~~~LGLs~~~~~~~l~~~v--D~ViH~AA~v~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~~k-~~V~vST~ 162 (491)
T PLN02996 89 VPGDISYDDLGVKDSNLREEMWKEI--DIVVNLAATTNFD---ERYDVALGINTLGALNVLNFAKKCVKVK-MLLHVSTA 162 (491)
T ss_pred EecccCCcCCCCChHHHHHHHHhCC--CEEEECccccCCc---CCHHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEEeee
Confidence 999998 445577788765 9999999986542 567889999999999999999986 554 99999999
Q ss_pred cccCCCCC----CCCCCCC--------------------------------------------C--CCCCCChHHHHHHH
Q 011841 247 SVYGLNTQ----VPFSESH--------------------------------------------R--TDQPASLYAATKKA 276 (476)
Q Consensus 247 ~vyg~~~~----~~~~E~~--------------------------------------------~--~~~p~~~Y~~sK~~ 276 (476)
+|||...+ .++.+.+ + ...+.+.|+.+|..
T Consensus 163 ~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y~~TK~~ 242 (491)
T PLN02996 163 YVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTYVFTKAM 242 (491)
T ss_pred EEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCchHhhHHH
Confidence 99986431 2222110 0 01234679999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCC-------cHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM-------AYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
+|.+++++.. +++++++||++||||+..+.. ....++..+..|....++ +++++.+|++||+|+|+++
T Consensus 243 aE~lv~~~~~--~lpv~i~RP~~V~G~~~~p~~gwi~~~~~~~~i~~~~~~g~~~~~~---gdg~~~~D~v~Vddvv~a~ 317 (491)
T PLN02996 243 GEMLLGNFKE--NLPLVIIRPTMITSTYKEPFPGWIEGLRTIDSVIVGYGKGKLTCFL---ADPNSVLDVIPADMVVNAM 317 (491)
T ss_pred HHHHHHHhcC--CCCEEEECCCEeccCCcCCCCCcccchhhHHHHHHHhccceEeEEe---cCCCeecceecccHHHHHH
Confidence 9999998754 899999999999999765421 123344555667766677 7899999999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCC--CcccHHHHHHHHHHHhCCCcc
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNT--SPVPVGRLVSILENLLNTKAK 401 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~--~~vt~~el~~~l~~~~g~~~~ 401 (476)
+.++........ . .++||++++ .++|+.++++.+.+.++..+.
T Consensus 318 l~a~~~~~~~~~-~--------~~vYNi~s~~~~~~s~~ei~~~~~~~~~~~p~ 362 (491)
T PLN02996 318 IVAMAAHAGGQG-S--------EIIYHVGSSLKNPVKFSNLHDFAYRYFSKNPW 362 (491)
T ss_pred HHHHHHhhccCC-C--------CcEEEecCCCCCcccHHHHHHHHHHHhhhCCC
Confidence 999886321100 0 189999998 899999999999999886553
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=279.43 Aligned_cols=304 Identities=19% Similarity=0.209 Sum_probs=219.9
Q ss_pred CEEEEECCCChhhHHHHHHHH--HCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH------HHHHHhhc
Q 011841 119 MTVLVTGAAGFVGSHCSLALK--KRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA------PLLTKLFD 190 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~--~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~------~~l~~~~~ 190 (476)
|+|||||||||||++|+++|+ ++|++|++++|.... ......... ....+++++.+|++|+ +.++++ +
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~--~~~~~~~~~-~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~ 76 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL--SRLEALAAY-WGADRVVPLVGDLTEPGLGLSEADIAEL-G 76 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH--HHHHHHHHh-cCCCcEEEEecccCCccCCcCHHHHHHh-c
Confidence 689999999999999999999 579999999994321 111111111 1225799999999984 455555 5
Q ss_pred cCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCC--CCCCC
Q 011841 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT--DQPAS 268 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~--~~p~~ 268 (476)
+ +|+|||+||..... .......++|+.++.+++++|++.+++ +|||+||.++||.... +++|++.. ..+.+
T Consensus 77 ~--~D~Vih~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~~SS~~v~g~~~~-~~~e~~~~~~~~~~~ 149 (657)
T PRK07201 77 D--IDHVVHLAAIYDLT---ADEEAQRAANVDGTRNVVELAERLQAA-TFHHVSSIAVAGDYEG-VFREDDFDEGQGLPT 149 (657)
T ss_pred C--CCEEEECceeecCC---CCHHHHHHHHhHHHHHHHHHHHhcCCC-eEEEEeccccccCccC-ccccccchhhcCCCC
Confidence 4 49999999975432 345678899999999999999999886 9999999999986543 45555422 23457
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCC-------cHHHHHHHHHcC-CceEEEeeCCCCceeEece
Q 011841 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM-------AYFFFTKDILQG-KTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~-------~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v 340 (476)
.|+.+|.++|.++++ ..|++++++||+.||||...... .+..++..+... ..+.+. +.+....+++
T Consensus 150 ~Y~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v 223 (657)
T PRK07201 150 PYHRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMDKIDGPYYFFKVLAKLAKLPSWLPMV---GPDGGRTNIV 223 (657)
T ss_pred chHHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccccCCcHHHHHHHHHHhccCCcccccc---cCCCCeeeee
Confidence 899999999999875 24899999999999998643211 111223332111 112232 3456678999
Q ss_pred eHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCc---cceeecCCC-----C--
Q 011841 341 YIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA---KKHVIRMPR-----N-- 410 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~---~~~~~~~~~-----~-- 410 (476)
|++|++++++.+++.+...+ ++||+++++++++.|+++.+.+.+|.+. .....|... .
T Consensus 224 ~vddva~ai~~~~~~~~~~g------------~~~ni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~~p~~~~~~~~~~~ 291 (657)
T PRK07201 224 PVDYVADALDHLMHKDGRDG------------QTFHLTDPKPQRVGDIYNAFARAAGAPPDARLFGFLPGFVAAPLLAAL 291 (657)
T ss_pred eHHHHHHHHHHHhcCcCCCC------------CEEEeCCCCCCcHHHHHHHHHHHhCCCccccccccCChHHHHHHhhhc
Confidence 99999999999987644432 8999999999999999999999999876 333222110 0
Q ss_pred --------------C--------CCCcccccHHHHHHhc---CCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 411 --------------G--------DVPYTHANVSLAYKDF---GYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 411 --------------~--------~~~~~~~d~~ka~~~L---G~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
+ -.....+|++++++.| |+... .+++.+.++++||.++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~~~~~~~~~~~~~~~ 357 (657)
T PRK07201 292 GPVRRLRNAVATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASYAPRLWDYWERHLDP 357 (657)
T ss_pred chhhHHHHHHHHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHHHHHHHHHHHhcCCh
Confidence 0 0122468889999888 66655 6899999999999888654
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=259.49 Aligned_cols=248 Identities=17% Similarity=0.156 Sum_probs=195.3
Q ss_pred CCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
..+..+|+||||||||+||++++++|+++|++|++++|............ ......++++++.+|++|++.+.+++++.
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~-~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~ 133 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKE-DTKKELPGAEVVFGDVTDADSLRKVLFSE 133 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhh-HHhhhcCCceEEEeeCCCHHHHHHHHHHh
Confidence 34567889999999999999999999999999999999664322110000 00112347999999999999999999864
Q ss_pred --CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChH
Q 011841 193 --PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLY 270 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y 270 (476)
++|+||||++... ......+++|+.++.+++++|++.+++ +||++||.++|+ |...|
T Consensus 134 ~~~~D~Vi~~aa~~~-----~~~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iSS~~v~~---------------p~~~~ 192 (390)
T PLN02657 134 GDPVDVVVSCLASRT-----GGVKDSWKIDYQATKNSLDAGREVGAK-HFVLLSAICVQK---------------PLLEF 192 (390)
T ss_pred CCCCcEEEECCccCC-----CCCccchhhHHHHHHHHHHHHHHcCCC-EEEEEeeccccC---------------cchHH
Confidence 5799999988522 112345778999999999999999986 999999998762 34568
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE-eceeHHHHHHHH
Q 011841 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR-DFTYIDDVVKGC 349 (476)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~v~v~Dva~a~ 349 (476)
..+|...|..+++ ...++++++|||+.+||+. ..++..+..|+++.++ ++++..+ ++||++|+|+++
T Consensus 193 ~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~-------~~~~~~~~~g~~~~~~---GdG~~~~~~~I~v~DlA~~i 260 (390)
T PLN02657 193 QRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL-------GGQVEIVKDGGPYVMF---GDGKLCACKPISEADLASFI 260 (390)
T ss_pred HHHHHHHHHHHHh--ccCCCCEEEEccHHHhccc-------HHHHHhhccCCceEEe---cCCcccccCceeHHHHHHHH
Confidence 8999999998876 3469999999999999752 2345667788888877 5666544 689999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCC-CcccHHHHHHHHHHHhCCCccceeec
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNT-SPVPVGRLVSILENLLNTKAKKHVIR 406 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~-~~vt~~el~~~l~~~~g~~~~~~~~~ 406 (476)
+.++.++...+ ++||++++ +.+|+.|+++++.+.+|++.++...|
T Consensus 261 ~~~~~~~~~~~------------~~~~Iggp~~~~S~~Eia~~l~~~lG~~~~~~~vp 306 (390)
T PLN02657 261 ADCVLDESKIN------------KVLPIGGPGKALTPLEQGEMLFRILGKEPKFFKVP 306 (390)
T ss_pred HHHHhCccccC------------CEEEcCCCCcccCHHHHHHHHHHHhCCCCceEEcC
Confidence 99998765443 89999986 68999999999999999887666554
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=237.21 Aligned_cols=279 Identities=20% Similarity=0.221 Sum_probs=212.7
Q ss_pred EEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEEEc
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHL 200 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~ 200 (476)
|+||||||+||++|+.+|.+.||+|++++|+....+.. ....+. ..+.+++.... .+|+|||+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~---------~~~~v~-------~~~~~~~~~~~-~~DavINL 63 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQN---------LHPNVT-------LWEGLADALTL-GIDAVINL 63 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhh---------cCcccc-------ccchhhhcccC-CCCEEEEC
Confidence 68999999999999999999999999999965422111 111121 12233344432 45999999
Q ss_pred cccC--ChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011841 201 AAQA--GVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP-SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 201 Ag~~--~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
||.. .-+|+.+..+.+.++.+..|..|+++..+...+| .+|..|.++.||...+..++|++++ +.+.-++...++
T Consensus 64 AG~~I~~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~--g~~Fla~lc~~W 141 (297)
T COG1090 64 AGEPIAERRWTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPP--GDDFLAQLCQDW 141 (297)
T ss_pred CCCccccccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCC--CCChHHHHHHHH
Confidence 9973 2357888889999999999999999988655444 6888888999999999999999654 667789999999
Q ss_pred HHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHH--HHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTK--DILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
|..+..... .|.+++++|.|.|.++.+.. ...|.. ...-|.++ |+|.|+++|||++|+++++..++++
T Consensus 142 E~~a~~a~~-~gtRvvllRtGvVLs~~GGa---L~~m~~~fk~glGG~~------GsGrQ~~SWIhieD~v~~I~fll~~ 211 (297)
T COG1090 142 EEEALQAQQ-LGTRVVLLRTGVVLSPDGGA---LGKMLPLFKLGLGGKL------GSGRQWFSWIHIEDLVNAILFLLEN 211 (297)
T ss_pred HHHHhhhhh-cCceEEEEEEEEEecCCCcc---hhhhcchhhhccCCcc------CCCCceeeeeeHHHHHHHHHHHHhC
Confidence 998888654 49999999999999986542 222221 22234444 8999999999999999999999999
Q ss_pred cCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCC------CCCCCcccccHHHH----HH
Q 011841 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR------NGDVPYTHANVSLA----YK 425 (476)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~------~~~~~~~~~d~~ka----~~ 425 (476)
+..+ +.||++.+.||+..++...+.++++++.. .+.|. -++.....++..++ ..
T Consensus 212 ~~ls-------------Gp~N~taP~PV~~~~F~~al~r~l~RP~~---~~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~ 275 (297)
T COG1090 212 EQLS-------------GPFNLTAPNPVRNKEFAHALGRALHRPAI---LPVPSFALRLLLGEMADLLLGGQRVLPKKLE 275 (297)
T ss_pred cCCC-------------CcccccCCCcCcHHHHHHHHHHHhCCCcc---ccCcHHHHHHHhhhhHHHHhccchhhHHHHH
Confidence 8887 78999999999999999999999998763 33332 13444444444333 14
Q ss_pred hcCCCccc-CHHHHHHHHHH
Q 011841 426 DFGYKPTT-DLAAGLRKFVK 444 (476)
Q Consensus 426 ~LG~~p~~-~l~e~l~~~v~ 444 (476)
..||+.+| +++++|.+.+.
T Consensus 276 ~aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 276 AAGFQFQYPDLEEALADILK 295 (297)
T ss_pred HCCCeeecCCHHHHHHHHHh
Confidence 58999887 69999988764
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=243.18 Aligned_cols=239 Identities=26% Similarity=0.349 Sum_probs=186.3
Q ss_pred EEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhh---hcCCceE----EEEeecCCHHHHHHhhccC
Q 011841 121 VLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKL---LQKHQVF----IVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~---~~~~~v~----~~~~Dl~d~~~l~~~~~~~ 192 (476)
||||||+|.||+.|+++|++.+ .++++++|++... -....+. ....++. .+.+|+.|.+.+..+|+..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l----~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~ 76 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKL----YELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY 76 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHH----HHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHH----HHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc
Confidence 7999999999999999999997 5899999955422 2222222 1223443 4588999999999999988
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHH
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (476)
+||+|+|.|+.-+++..+.+|.+.+++|+.||.|++++|.+.+++ +||++||.-+. +|.+.||+
T Consensus 77 ~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~-~~v~ISTDKAv---------------~PtnvmGa 140 (293)
T PF02719_consen 77 KPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVE-RFVFISTDKAV---------------NPTNVMGA 140 (293)
T ss_dssp T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-S-EEEEEEECGCS---------------S--SHHHH
T ss_pred CCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEccccccC---------------CCCcHHHH
Confidence 999999999999999999999999999999999999999999997 99999997653 78899999
Q ss_pred HHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 273 TKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 273 sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
||+.+|.++..++... +.+++++|+|+|+|..+. .++.|.+++.+|+|+++. +.+..|-|+.++|.++.+
T Consensus 141 tKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~GS---Vip~F~~Qi~~g~PlTvT----~p~mtRffmti~EAv~Lv 213 (293)
T PF02719_consen 141 TKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSRGS---VIPLFKKQIKNGGPLTVT----DPDMTRFFMTIEEAVQLV 213 (293)
T ss_dssp HHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGTTS---CHHHHHHHHHTTSSEEEC----ETT-EEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCCCc---HHHHHHHHHHcCCcceeC----CCCcEEEEecHHHHHHHH
Confidence 9999999999998765 689999999999998554 789999999999999997 478899999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCC
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTK 399 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~ 399 (476)
+.+....... ++|.+--++++.+.|+++.+.+..|.+
T Consensus 214 l~a~~~~~~g-------------eifvl~mg~~v~I~dlA~~~i~~~g~~ 250 (293)
T PF02719_consen 214 LQAAALAKGG-------------EIFVLDMGEPVKILDLAEAMIELSGLE 250 (293)
T ss_dssp HHHHHH--TT-------------EEEEE---TCEECCCHHHHHHHHTT-E
T ss_pred HHHHhhCCCC-------------cEEEecCCCCcCHHHHHHHHHhhcccc
Confidence 9999875432 899998889999999999999999854
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-28 Score=245.32 Aligned_cols=245 Identities=24% Similarity=0.296 Sum_probs=214.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..+|+||||||+|.||+.+++++++.+ .++++++|++........+..... ...++.++-||+.|.+.+.+++++.++
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~-~~~~~~~~igdVrD~~~~~~~~~~~kv 326 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKF-PELKLRFYIGDVRDRDRVERAMEGHKV 326 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhC-CCcceEEEecccccHHHHHHHHhcCCC
Confidence 478999999999999999999999987 478888886654433333333222 246889999999999999999999899
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (476)
|+|+|+|+.-+++..+.+|.+.++.|+.||.|++++|.+++++ +||.+||.-+- +|.+.||++|
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~-~~V~iSTDKAV---------------~PtNvmGaTK 390 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVK-KFVLISTDKAV---------------NPTNVMGATK 390 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCC-EEEEEecCccc---------------CCchHhhHHH
Confidence 9999999999999999999999999999999999999999997 99999996542 7889999999
Q ss_pred HHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHH
Q 011841 275 KAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (476)
Q Consensus 275 ~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~ 351 (476)
+.+|.++..++... +.+++++|+|+|.|..+. .++.|.+++.+|+|+++. +.+..|-|+.+.|.++.++.
T Consensus 391 r~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSrGS---ViPlFk~QI~~GgplTvT----dp~mtRyfMTI~EAv~LVlq 463 (588)
T COG1086 391 RLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSRGS---VIPLFKKQIAEGGPLTVT----DPDMTRFFMTIPEAVQLVLQ 463 (588)
T ss_pred HHHHHHHHHHhhccCCCCcEEEEEEecceecCCCC---CHHHHHHHHHcCCCcccc----CCCceeEEEEHHHHHHHHHH
Confidence 99999999998743 389999999999998655 789999999999999998 57889999999999999999
Q ss_pred HHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhC
Q 011841 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN 397 (476)
Q Consensus 352 ~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g 397 (476)
+...... | ++|-+--|+++++.|+++.+-+..|
T Consensus 464 A~a~~~g-----G--------eifvldMGepvkI~dLAk~mi~l~g 496 (588)
T COG1086 464 AGAIAKG-----G--------EIFVLDMGEPVKIIDLAKAMIELAG 496 (588)
T ss_pred HHhhcCC-----C--------cEEEEcCCCCeEHHHHHHHHHHHhC
Confidence 8877332 2 9999998999999999999999998
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=221.20 Aligned_cols=319 Identities=20% Similarity=0.228 Sum_probs=252.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHh---hhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQK---LLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~---~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
..|..||||-||.=|++|++.|+.+||+|+++.|.++......-+..-. ...........+|++|...+.+++..++
T Consensus 27 ~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik 106 (376)
T KOG1372|consen 27 PRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK 106 (376)
T ss_pred cceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence 4568899999999999999999999999999999887665433222111 1123468899999999999999999999
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCccccCCCCCCCCCCCCCCCCCCChHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYA 271 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (476)
|+-|+|+|++.++..+-+-++..-+++..|+..|+++.+.++.. -+|...|++..||...+.|.+|..|. .|.++|+
T Consensus 107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPF-yPRSPYa 185 (376)
T KOG1372|consen 107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPF-YPRSPYA 185 (376)
T ss_pred chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCC-CCCChhH
Confidence 99999999999988888889999999999999999998877653 28999999999999999999999988 8999999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHc---CCceEEEeeCCCCceeEeceeHHHHHHH
Q 011841 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ---GKTIDVYKTQDDREVARDFTYIDDVVKG 348 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~v~v~Dva~a 348 (476)
++|..+-.++-+|++.|++-.+-=-+++--.|....+.....+.+.+.+ |+.-.+.. |+-+..+||-|+.|-+++
T Consensus 186 ~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFVTRKItRsvakI~~gqqe~~~L--GNL~a~RDWGhA~dYVEA 263 (376)
T KOG1372|consen 186 AAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFVTRKITRSVAKISLGQQEKIEL--GNLSALRDWGHAGDYVEA 263 (376)
T ss_pred HhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchhhHHHHHHHHHhhhcceeeEEe--cchhhhcccchhHHHHHH
Confidence 9999999998898888876444333344445654444444444443332 33333332 677889999999999999
Q ss_pred HHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecC-------------------CC
Q 011841 349 CVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM-------------------PR 409 (476)
Q Consensus 349 ~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~-------------------~~ 409 (476)
++.+|+++.. ..|-|+.++..+++|+++.-...+|....+.-... -+
T Consensus 264 MW~mLQ~d~P--------------dDfViATge~hsVrEF~~~aF~~ig~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyR 329 (376)
T KOG1372|consen 264 MWLMLQQDSP--------------DDFVIATGEQHSVREFCNLAFAEIGEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYR 329 (376)
T ss_pred HHHHHhcCCC--------------CceEEecCCcccHHHHHHHHHHhhCcEEeecccccccccccCCceEEEEecccccC
Confidence 9999999876 55899999999999999999998885433321111 12
Q ss_pred CCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 410 NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 410 ~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
+.+.....-|.+|+++.|||+|+.++++.+++|+..-.+..+.
T Consensus 330 PtEVd~LqGdasKAk~~LgW~pkv~f~eLVkeMv~~DieLm~~ 372 (376)
T KOG1372|consen 330 PTEVDTLQGDASKAKKTLGWKPKVTFPELVKEMVASDIELMKR 372 (376)
T ss_pred cchhhhhcCChHHHHHhhCCCCccCHHHHHHHHHHhHHHHHhh
Confidence 3445556689999999999999999999999999876665543
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.6e-27 Score=240.32 Aligned_cols=257 Identities=24% Similarity=0.286 Sum_probs=187.3
Q ss_pred EEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHh---h-h-----cCCceEEEEeecCCH------
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQK---L-L-----QKHQVFIVEGDLNDA------ 182 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~---~-~-----~~~~v~~~~~Dl~d~------ 182 (476)
+|||||||||||++|+++|+++| ++|++++|..+... ...+.... . + ...+++++.+|++++
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~ 79 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEH-AMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD 79 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHH-HHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence 58999999999999999999999 67999999654211 11111111 0 0 014799999999754
Q ss_pred HHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 183 PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 183 ~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
+.+..+.+++ |+|||+|+.... ........+.|+.++.+++++|.+.+.+ +||++||.++|+.....+..|+++
T Consensus 80 ~~~~~~~~~~--d~vih~a~~~~~---~~~~~~~~~~nv~g~~~ll~~a~~~~~~-~~v~iSS~~v~~~~~~~~~~~~~~ 153 (367)
T TIGR01746 80 AEWERLAENV--DTIVHNGALVNW---VYPYSELRAANVLGTREVLRLAASGRAK-PLHYVSTISVLAAIDLSTVTEDDA 153 (367)
T ss_pred HHHHHHHhhC--CEEEeCCcEecc---CCcHHHHhhhhhHHHHHHHHHHhhCCCc-eEEEEccccccCCcCCCCcccccc
Confidence 4566666655 999999997542 2345667889999999999999998876 799999999998654333344433
Q ss_pred C----CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC----CCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 263 T----DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 263 ~----~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
. ..+.+.|+.+|+++|.+++++.+. |++++++|||.|||+.... ...+..++......+..+ ....
T Consensus 154 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p-----~~~~ 227 (367)
T TIGR01746 154 IVTPPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAINSSDILWRMVKGCLALGAYP-----DSPE 227 (367)
T ss_pred ccccccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCCchhHHHHHHHHHHHhCCCC-----CCCc
Confidence 2 123468999999999999987765 9999999999999973321 122333444433333221 2222
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcc
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK 401 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~ 401 (476)
...+|+|++|++++++.++..+... .+ ++||+++++++++.|+++.+.+ +|.+..
T Consensus 228 ~~~~~~~vddva~ai~~~~~~~~~~~~~-----------~~~~v~~~~~~s~~e~~~~i~~-~g~~~~ 283 (367)
T TIGR01746 228 LTEDLTPVDYVARAIVALSSQPAASAGG-----------PVFHVVNPEPVSLDEFLEWLER-AGYNLK 283 (367)
T ss_pred cccCcccHHHHHHHHHHHHhCCCcccCC-----------ceEEecCCCCCCHHHHHHHHHH-cCCCCC
Confidence 4678999999999999998776532 12 8999999999999999999999 887654
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=257.31 Aligned_cols=266 Identities=18% Similarity=0.245 Sum_probs=201.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
...|+||||||+||||++|++.|.++|++|... .+|++|.+.+.++++..++|
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~---------------------------~~~l~d~~~v~~~i~~~~pd 430 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG---------------------------KGRLEDRSSLLADIRNVKPT 430 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCCeEEee---------------------------ccccccHHHHHHHHHhhCCC
Confidence 345799999999999999999999999987421 24688889999999888899
Q ss_pred EEEEccccCC---hhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCC------CCCCCCCCCCCCCC
Q 011841 196 HVLHLAAQAG---VRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN------TQVPFSESHRTDQP 266 (476)
Q Consensus 196 ~Vi~~Ag~~~---~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~------~~~~~~E~~~~~~p 266 (476)
+|||+|+... .++++.++...+++|+.++.+|+++|++.++ ++|++||.+||+.. ...|++|++++.++
T Consensus 431 ~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~--~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~ 508 (668)
T PLN02260 431 HVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL--LMMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFT 508 (668)
T ss_pred EEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC--eEEEEcccceecCCcccccccCCCCCcCCCCCCC
Confidence 9999999863 4566788999999999999999999999987 57888898998742 13478888877555
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCc-eEEEeeCCCCceeEeceeHHHH
Q 011841 267 ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKT-IDVYKTQDDREVARDFTYIDDV 345 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~v~Dv 345 (476)
.+.|+.+|+++|.+++.+. ++.++|+.++||.+... ...|+..+++... +.+. .+..+++|+
T Consensus 509 ~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~---~~nfv~~~~~~~~~~~vp---------~~~~~~~~~ 571 (668)
T PLN02260 509 GSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN---PRNFITKISRYNKVVNIP---------NSMTVLDEL 571 (668)
T ss_pred CChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC---ccHHHHHHhccceeeccC---------CCceehhhH
Confidence 6899999999999998864 35788888888643211 1245555555443 2221 246778999
Q ss_pred HHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceee---cCC--C-CCCCCccccc
Q 011841 346 VKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI---RMP--R-NGDVPYTHAN 419 (476)
Q Consensus 346 a~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~---~~~--~-~~~~~~~~~d 419 (476)
+.+++.+++... + ++||++++..+|+.|+++.+.+.++....+..+ ..+ . ..++.+ .+|
T Consensus 572 ~~~~~~l~~~~~--~------------giyni~~~~~~s~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~a~rp~~-~l~ 636 (668)
T PLN02260 572 LPISIEMAKRNL--R------------GIWNFTNPGVVSHNEILEMYKDYIDPGFKWSNFTLEEQAKVIVAPRSNN-EMD 636 (668)
T ss_pred HHHHHHHHHhCC--C------------ceEEecCCCcCcHHHHHHHHHHhcCCcccccccCHHHhhhHhhCCCccc-ccc
Confidence 999888886422 2 899999999999999999999988522111111 111 1 123444 799
Q ss_pred HHHHHHhcCCCcccCHHHHHHHHHH
Q 011841 420 VSLAYKDFGYKPTTDLAAGLRKFVK 444 (476)
Q Consensus 420 ~~ka~~~LG~~p~~~l~e~l~~~v~ 444 (476)
++|+++.+|. +. +|+|+|.+++.
T Consensus 637 ~~k~~~~~~~-~~-~~~~~l~~~~~ 659 (668)
T PLN02260 637 ASKLKKEFPE-LL-SIKESLIKYVF 659 (668)
T ss_pred HHHHHHhCcc-cc-chHHHHHHHHh
Confidence 9999999999 65 89999998764
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=231.51 Aligned_cols=263 Identities=17% Similarity=0.207 Sum_probs=187.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC---eEEEEeCCCCCCCchHHHHHHhh-------------h------cCCceE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD---GVLGLDNFNSYYDPSLKRARQKL-------------L------QKHQVF 173 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~---~V~~~~R~~~~~~~~~~~~~~~~-------------~------~~~~v~ 173 (476)
.++|+|||||||||||.+|+++|++.+. +|+++.|....... .++..... . ...+++
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a-~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~ 195 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAA-IERLKNEVIDAELFKCLQETHGKSYQSFMLSKLV 195 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhH-HHHHHHHHhhhhhHHHHHHhcCccccccccccEE
Confidence 4679999999999999999999998764 68999997653322 11111110 0 134799
Q ss_pred EEEeecCCH------HHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 174 IVEGDLNDA------PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 174 ~~~~Dl~d~------~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
++.+|++++ +..+.+.+++ |+|||+|+....+ .+++..+++|+.|+.+|+++|++.+..++|||+||++
T Consensus 196 ~v~GDl~d~~LGLs~~~~~~L~~~v--DiVIH~AA~v~f~---~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTay 270 (605)
T PLN02503 196 PVVGNVCESNLGLEPDLADEIAKEV--DVIINSAANTTFD---ERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAY 270 (605)
T ss_pred EEEeeCCCcccCCCHHHHHHHHhcC--CEEEECccccccc---cCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCce
Confidence 999999986 4556666654 9999999986543 5678899999999999999999875444899999999
Q ss_pred ccCCCCC----CCCCCCC--------------------------------C---------------------CCCCCChH
Q 011841 248 VYGLNTQ----VPFSESH--------------------------------R---------------------TDQPASLY 270 (476)
Q Consensus 248 vyg~~~~----~~~~E~~--------------------------------~---------------------~~~p~~~Y 270 (476)
|||...+ .++...+ . ...-.+.|
T Consensus 271 VyG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~~pNtY 350 (605)
T PLN02503 271 VNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYGWQDTY 350 (605)
T ss_pred eecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCCCCChH
Confidence 9987531 1221000 0 01113679
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeeCcccC----------CCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYG----------PWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
..+|..+|.++++... +++++|+||+.|.+ ++... ..+.+ -.+.+|..-.++ ++++...|+|
T Consensus 351 t~TK~lAE~lV~~~~~--~LPv~IvRPsiV~st~~eP~pGw~d~~~~--~~p~~-~~~g~G~lr~~~---~~~~~~~DiV 422 (605)
T PLN02503 351 VFTKAMGEMVINSMRG--DIPVVIIRPSVIESTWKDPFPGWMEGNRM--MDPIV-LYYGKGQLTGFL---ADPNGVLDVV 422 (605)
T ss_pred HHHHHHHHHHHHHhcC--CCCEEEEcCCEecccccCCccccccCccc--cchhh-hheeccceeEEE---eCCCeeEeEE
Confidence 9999999999997653 89999999999944 32211 11112 112244333344 7789999999
Q ss_pred eHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCC--CcccHHHHHHHHHHHhCCCc
Q 011841 341 YIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNT--SPVPVGRLVSILENLLNTKA 400 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~--~~vt~~el~~~l~~~~g~~~ 400 (476)
+||.|+.+++.++........ ....+||++++ .++++.++++.+.+.+...+
T Consensus 423 PVD~vvna~i~a~a~~~~~~~--------~~~~vYn~ts~~~nP~t~~~~~~~~~~~~~~~P 476 (605)
T PLN02503 423 PADMVVNATLAAMAKHGGAAK--------PEINVYQIASSVVNPLVFQDLARLLYEHYKSSP 476 (605)
T ss_pred eecHHHHHHHHHHHhhhcccC--------CCCCEEEeCCCCCCCeEHHHHHHHHHHHHhhCC
Confidence 999999999998543211110 01289999988 89999999999998876543
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=232.98 Aligned_cols=236 Identities=20% Similarity=0.176 Sum_probs=173.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||++|+++|+++|++|++++|.... ....+++++.+|+.|.. +.+++.++ |+||
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~------------~~~~~ve~v~~Dl~d~~-l~~al~~~--D~VI 65 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHD------------ALDPRVDYVCASLRNPV-LQELAGEA--DAVI 65 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhh------------cccCCceEEEccCCCHH-HHHHhcCC--CEEE
Confidence 589999999999999999999999999999984321 11247889999999985 77777765 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+|+.... . ...+|+.|+.+++++|++.++ ++||+||. ||.. ..|. .+|
T Consensus 66 HLAa~~~~-----~---~~~vNv~Gt~nLleAA~~~Gv--RiV~~SS~--~G~~---------------~~~~----~aE 114 (699)
T PRK12320 66 HLAPVDTS-----A---PGGVGITGLAHVANAAARAGA--RLLFVSQA--AGRP---------------ELYR----QAE 114 (699)
T ss_pred EcCccCcc-----c---hhhHHHHHHHHHHHHHHHcCC--eEEEEECC--CCCC---------------cccc----HHH
Confidence 99986321 1 125799999999999999986 79999986 3321 0121 356
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCC--CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
.++.. ++++++++|++++|||+.... .++..++....+++++ .++|++|++++++.+++.+
T Consensus 115 ~ll~~----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~~~~~~pI-------------~vIyVdDvv~alv~al~~~ 177 (699)
T PRK12320 115 TLVST----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRSKVSARPI-------------RVLHLDDLVRFLVLALNTD 177 (699)
T ss_pred HHHHh----cCCCEEEEeCceecCCCCcccHhHHHHHHHHHHHcCCce-------------EEEEHHHHHHHHHHHHhCC
Confidence 65544 579999999999999965432 2344455444444433 3589999999999999753
Q ss_pred CcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCcccCHH
Q 011841 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLA 436 (476)
Q Consensus 357 ~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~ 436 (476)
. . ++|||++++.+|+.|+++++...... .... ...+.....-|+..++..++|+|+++|+
T Consensus 178 ~--~------------GiyNIG~~~~~Si~el~~~i~~~~p~-~~~~-----~~~~~~~~~pdi~~a~~~~~w~~~~~~~ 237 (699)
T PRK12320 178 R--N------------GVVDLATPDTTNVVTAWRLLRSVDPH-LRTR-----RVRSWEQLIPEVDIAAVQEDWNFEFGWQ 237 (699)
T ss_pred C--C------------CEEEEeCCCeeEHHHHHHHHHHhCCC-cccc-----ccccHHHhCCCCchhhhhcCCCCcchHH
Confidence 2 2 79999999999999999998776211 1111 1233334567777888889999998775
Q ss_pred H
Q 011841 437 A 437 (476)
Q Consensus 437 e 437 (476)
.
T Consensus 238 ~ 238 (699)
T PRK12320 238 A 238 (699)
T ss_pred H
Confidence 3
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-25 Score=213.23 Aligned_cols=217 Identities=22% Similarity=0.248 Sum_probs=132.5
Q ss_pred EECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHh--------h---hcCCceEEEEeecCCH------H
Q 011841 123 VTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQK--------L---LQKHQVFIVEGDLNDA------P 183 (476)
Q Consensus 123 VtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~--------~---~~~~~v~~~~~Dl~d~------~ 183 (476)
|||||||||.+|+++|++++. +|++++|..+..+ ..++.... . ....+++++.||++++ +
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~-~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~ 79 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQS-ALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDE 79 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHH-HHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCccccc-chhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChH
Confidence 799999999999999999987 9999999664211 11122111 0 1256999999999875 4
Q ss_pred HHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCC------C
Q 011841 184 LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVP------F 257 (476)
Q Consensus 184 ~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~------~ 257 (476)
.+..+.+.+ |+|||+||..+.. .+..+..+.|+.||.+|+++|.+...+ +|+|+||+.+.+...... .
T Consensus 80 ~~~~L~~~v--~~IiH~Aa~v~~~---~~~~~~~~~NV~gt~~ll~la~~~~~~-~~~~iSTa~v~~~~~~~~~~~~~~~ 153 (249)
T PF07993_consen 80 DYQELAEEV--DVIIHCAASVNFN---APYSELRAVNVDGTRNLLRLAAQGKRK-RFHYISTAYVAGSRPGTIEEKVYPE 153 (249)
T ss_dssp HHHHHHHH----EEEE--SS-SBS----S--EEHHHHHHHHHHHHHHHTSSS----EEEEEEGGGTTS-TTT--SSS-HH
T ss_pred Hhhcccccc--ceeeecchhhhhc---ccchhhhhhHHHHHHHHHHHHHhccCc-ceEEeccccccCCCCCccccccccc
Confidence 577777777 9999999986653 345557889999999999999987766 999999966655443211 1
Q ss_pred CCC--CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCC----CCCCcHHHHHHHHHc-CCceEEEeeC
Q 011841 258 SES--HRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG----RPDMAYFFFTKDILQ-GKTIDVYKTQ 330 (476)
Q Consensus 258 ~E~--~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~----~~~~~~~~~~~~~~~-g~~~~~~~~~ 330 (476)
.+. +......+.|.+||+.+|.+++++.++.|++++|+|||.|+|... +.......++..... |......
T Consensus 154 ~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~--- 230 (249)
T PF07993_consen 154 EEDDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWNSDDFFPYLLRSCIALGAFPDLP--- 230 (249)
T ss_dssp H--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS---TTBHHHHHHHHHHHH-EEES-S---
T ss_pred ccccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceeeccchHHHHHHHHHHcCCccccc---
Confidence 111 122245568999999999999999998899999999999999422 122323344444443 4323233
Q ss_pred CCCceeEeceeHHHHHHHH
Q 011841 331 DDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~ 349 (476)
++.+...++++||.+|++|
T Consensus 231 ~~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 231 GDPDARLDLVPVDYVARAI 249 (249)
T ss_dssp B---TT--EEEHHHHHHHH
T ss_pred CCCCceEeEECHHHHHhhC
Confidence 3445569999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=211.78 Aligned_cols=218 Identities=17% Similarity=0.136 Sum_probs=161.1
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc----CC-c
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV----VP-F 194 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~----~~-~ 194 (476)
+||||||||+||++++++|+++|++|++++|+.+.. ...+++.+.+|+.|++++.++++. .. +
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~------------~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~ 68 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS------------AGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc------------cCCCCccccccCCCHHHHHHHHhcccCcCCce
Confidence 489999999999999999999999999999965422 123677889999999999999832 12 4
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (476)
|.|+|+++.... ....+.+++++|+++|++ |||++||..++... + .+
T Consensus 69 d~v~~~~~~~~~-------------~~~~~~~~i~aa~~~gv~-~~V~~Ss~~~~~~~-------------~------~~ 115 (285)
T TIGR03649 69 SAVYLVAPPIPD-------------LAPPMIKFIDFARSKGVR-RFVLLSASIIEKGG-------------P------AM 115 (285)
T ss_pred eEEEEeCCCCCC-------------hhHHHHHHHHHHHHcCCC-EEEEeeccccCCCC-------------c------hH
Confidence 999999874210 123456899999999997 99999987653110 0 12
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHh
Q 011841 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354 (476)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~ 354 (476)
...|+++++. .|+++++|||+++|+..... .+...+..+..+. . +.++..++|++++|+|++++.++.
T Consensus 116 ~~~~~~l~~~---~gi~~tilRp~~f~~~~~~~-----~~~~~~~~~~~~~-~---~~g~~~~~~v~~~Dva~~~~~~l~ 183 (285)
T TIGR03649 116 GQVHAHLDSL---GGVEYTVLRPTWFMENFSEE-----FHVEAIRKENKIY-S---ATGDGKIPFVSADDIARVAYRALT 183 (285)
T ss_pred HHHHHHHHhc---cCCCEEEEeccHHhhhhccc-----ccccccccCCeEE-e---cCCCCccCcccHHHHHHHHHHHhc
Confidence 2344444331 49999999999998653111 1122233333332 2 346778999999999999999998
Q ss_pred hcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeec
Q 011841 355 TAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 406 (476)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~ 406 (476)
++...+ ++|++++++.+|+.|+++++.+.+|++......+
T Consensus 184 ~~~~~~------------~~~~l~g~~~~s~~eia~~l~~~~g~~v~~~~~~ 223 (285)
T TIGR03649 184 DKVAPN------------TDYVVLGPELLTYDDVAEILSRVLGRKITHVKLT 223 (285)
T ss_pred CCCcCC------------CeEEeeCCccCCHHHHHHHHHHHhCCceEEEeCC
Confidence 865443 7899999999999999999999999987665544
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=200.24 Aligned_cols=292 Identities=19% Similarity=0.196 Sum_probs=223.3
Q ss_pred CCCCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc
Q 011841 111 ATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 111 ~~~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
....+.++..+-|.|||||+|++++..|.+.|-+|++-.|..++.-..++ -.-+-.+|.+...|+.|+++++++++
T Consensus 54 GGRsS~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lk----vmGdLGQvl~~~fd~~DedSIr~vvk 129 (391)
T KOG2865|consen 54 GGRSSVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLK----VMGDLGQVLFMKFDLRDEDSIRAVVK 129 (391)
T ss_pred CCcccccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhhee----ecccccceeeeccCCCCHHHHHHHHH
Confidence 34455788888999999999999999999999999999998775433222 22234589999999999999999999
Q ss_pred cCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChH
Q 011841 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLY 270 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y 270 (476)
-. .+|||+.|... +...-.+.++|+.+.+.|.+.|+++|+. +||++|+...- . ...+-|
T Consensus 130 ~s--NVVINLIGrd~----eTknf~f~Dvn~~~aerlAricke~GVe-rfIhvS~Lgan-------------v-~s~Sr~ 188 (391)
T KOG2865|consen 130 HS--NVVINLIGRDY----ETKNFSFEDVNVHIAERLARICKEAGVE-RFIHVSCLGAN-------------V-KSPSRM 188 (391)
T ss_pred hC--cEEEEeecccc----ccCCcccccccchHHHHHHHHHHhhChh-heeehhhcccc-------------c-cChHHH
Confidence 88 99999998622 1223357789999999999999999998 99999987631 1 345679
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHH
Q 011841 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350 (476)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~ 350 (476)
-.+|.++|..+++... ..||+||..|||..++ ++..+.....+-+.++++. .+....-..+||-|||.+|+
T Consensus 189 LrsK~~gE~aVrdafP----eAtIirPa~iyG~eDr---fln~ya~~~rk~~~~pL~~--~GekT~K~PVyV~DVaa~Iv 259 (391)
T KOG2865|consen 189 LRSKAAGEEAVRDAFP----EATIIRPADIYGTEDR---FLNYYASFWRKFGFLPLIG--KGEKTVKQPVYVVDVAAAIV 259 (391)
T ss_pred HHhhhhhHHHHHhhCC----cceeechhhhcccchh---HHHHHHHHHHhcCceeeec--CCcceeeccEEEehHHHHHH
Confidence 9999999999998543 5899999999998654 5554544445567788774 34456778999999999999
Q ss_pred HHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCC-------------C------
Q 011841 351 GALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN-------------G------ 411 (476)
Q Consensus 351 ~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~-------------~------ 411 (476)
.++..|...+ .+|..++++.++..||++.+-+....-..+...++|-. .
T Consensus 260 nAvkDp~s~G------------ktye~vGP~~yql~eLvd~my~~~~~~~ry~r~~mP~f~a~a~~~~f~~~pf~~~~pl 327 (391)
T KOG2865|consen 260 NAVKDPDSMG------------KTYEFVGPDRYQLSELVDIMYDMAREWPRYVRLPMPIFKAMAAARDFMIVPFPPPSPL 327 (391)
T ss_pred HhccCccccC------------ceeeecCCchhhHHHHHHHHHHHHhhccccccCCcHHHHHHHhhhheeecCCCCCCCC
Confidence 9999997664 99999999999999999999998877555555555421 0
Q ss_pred --------CCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHH
Q 011841 412 --------DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 449 (476)
Q Consensus 412 --------~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~ 449 (476)
......++...-.++||.+++ .++..--+.+..|++.
T Consensus 328 n~d~ie~~~v~~~vlt~~~tleDLgv~~t-~le~~~~e~l~~yR~~ 372 (391)
T KOG2865|consen 328 NRDQIERLTVTDLVLTGAPTLEDLGVVLT-KLELYPVEFLRQYRKG 372 (391)
T ss_pred CHHHhhheeehhhhcCCCCcHhhcCceee-ecccccHHHHHHHhhc
Confidence 001112223333478999866 7776666666666665
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=202.76 Aligned_cols=236 Identities=17% Similarity=0.153 Sum_probs=172.9
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc-----C
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV-----V 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-----~ 192 (476)
.|+||||||+|+||++++++|+++|++|++++|..+ ........ ...++.++.+|++|.+++.++++. .
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~----~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 75 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPD----ALDDLKAR--YGDRLWVLQLDVTDSAAVRAVVDRAFAALG 75 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHh--ccCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 368999999999999999999999999999998532 11111111 123788999999999998887764 2
Q ss_pred CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||..... .+.++.+..+++|+.++.++++++ ++.+.. +||++||...... .
T Consensus 76 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~------------~ 142 (276)
T PRK06482 76 RIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGG-RIVQVSSEGGQIA------------Y 142 (276)
T ss_pred CCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcCcccccC------------C
Confidence 579999999975432 223445678899999999999997 445554 9999999764321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcc---cCCCCCCC--------CcHHHHHHHHHcCCceEEEeeC
Q 011841 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTV---YGPWGRPD--------MAYFFFTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v---~G~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~ 330 (476)
++.+.|+.+|.+.|.+++.++++ +|++++++|||.+ ||++.... .....+.+.+ ..+.+.+
T Consensus 143 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---- 217 (276)
T PRK06482 143 PGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGAPLDAYDDTPVGDLRRAL-ADGSFAI---- 217 (276)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccCCCccccchhhHHHHHHH-hhccCCC----
Confidence 35678999999999999998876 5899999999998 65532211 1112233322 2222211
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCC
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~ 398 (476)
+.+++|++++++.++..+... ..||+++++..+..++++.+.+.++.
T Consensus 218 --------~~d~~~~~~a~~~~~~~~~~~-------------~~~~~g~~~~~~~~~~~~~~~~~~~~ 264 (276)
T PRK06482 218 --------PGDPQKMVQAMIASADQTPAP-------------RRLTLGSDAYASIRAALSERLAALEA 264 (276)
T ss_pred --------CCCHHHHHHHHHHHHcCCCCC-------------eEEecChHHHHHHHHHHHHHHHHHHH
Confidence 356899999999998765432 67999999989998888888777753
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-23 Score=197.85 Aligned_cols=231 Identities=20% Similarity=0.135 Sum_probs=161.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-HHHHHHhh-ccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLF-DVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~-~~~~ 193 (476)
..+|+||||||+|+||+.++++|+++|++|+++.|..+. .........+++++.+|++| .+.+.+.+ .+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~-------~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~-- 85 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDK-------AKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD-- 85 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHH-------HHHhcccCCceEEEEeeCCCCHHHHHHHhhcC--
Confidence 456899999999999999999999999999999985431 11111123479999999998 46676666 44
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
+|+|||++|.... .++...+++|..++.++++++++.+.+ +||++||.++||...+.+..+......+...|...
T Consensus 86 ~d~vi~~~g~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~~~-~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~ 160 (251)
T PLN00141 86 SDAVICATGFRRS----FDPFAPWKVDNFGTVNLVEACRKAGVT-RFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVA 160 (251)
T ss_pred CCEEEECCCCCcC----CCCCCceeeehHHHHHHHHHHHHcCCC-EEEEEccccccCCCcccccCcchhHHHHHHHHHHH
Confidence 4999999886321 122234567899999999999998886 99999999999854332222211111222334566
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l 353 (476)
|..+|+++++ .|+++++|||++++++... +. +.+. .+......+++.+|+|++++.++
T Consensus 161 k~~~e~~l~~----~gi~~~iirpg~~~~~~~~--------------~~-~~~~---~~~~~~~~~i~~~dvA~~~~~~~ 218 (251)
T PLN00141 161 KLQAEKYIRK----SGINYTIVRPGGLTNDPPT--------------GN-IVME---PEDTLYEGSISRDQVAEVAVEAL 218 (251)
T ss_pred HHHHHHHHHh----cCCcEEEEECCCccCCCCC--------------ce-EEEC---CCCccccCcccHHHHHHHHHHHh
Confidence 8888876654 5899999999999986321 11 1111 11112235799999999999999
Q ss_pred hhcCcCCCCCCCCCCCCCceEEEEcCC---CcccHHHHHHHHHH
Q 011841 354 DTAGKSTGSGGKKRGPAQLRVYNLGNT---SPVPVGRLVSILEN 394 (476)
Q Consensus 354 ~~~~~~~g~~~~~~~~~~~~i~ni~~~---~~vt~~el~~~l~~ 394 (476)
..+.... .++.+.+. ...++++++..+.+
T Consensus 219 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 219 LCPESSY------------KVVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred cChhhcC------------cEEEEecCCCCCchhHHHHHHHhhc
Confidence 8877544 77777762 24788888877653
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=195.35 Aligned_cols=230 Identities=15% Similarity=0.078 Sum_probs=162.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..+++||||||+|+||++++++|+++|++|++++|..... ......... ....+.++.+|++|.+++.++++..
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 80 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAE---ADALAAELNALRPGSAAALQADLLDPDALPELVAACV 80 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 4558999999999999999999999999999999854311 111111111 1236889999999999999888753
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+|||+||.... ....++++..+++|+.++.++++++...- ....++++++.... .
T Consensus 81 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~- 148 (249)
T PRK09135 81 AAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAE-----------R- 148 (249)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhc-----------C-
Confidence 57999999997432 12234567899999999999999986421 11257776653321 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
+.++...|+.+|.++|.+++.+++++ +++++++|||.++||..... +...+......+.++.. +.
T Consensus 149 ~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------~~ 215 (249)
T PRK09135 149 PLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNS-FDEEARQAILARTPLKR------------IG 215 (249)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCcccccc-CCHHHHHHHHhcCCcCC------------Cc
Confidence 22577899999999999999998876 59999999999999975432 22223333333332211 23
Q ss_pred eHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 341 YIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
+++|+|++++.++.......| ++||++++..++
T Consensus 216 ~~~d~a~~~~~~~~~~~~~~g-----------~~~~i~~g~~~~ 248 (249)
T PRK09135 216 TPEDIAEAVRFLLADASFITG-----------QILAVDGGRSLT 248 (249)
T ss_pred CHHHHHHHHHHHcCccccccC-----------cEEEECCCeecc
Confidence 489999999766654332232 899999988654
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-23 Score=198.63 Aligned_cols=228 Identities=18% Similarity=0.132 Sum_probs=163.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++||||||+|+||.++++.|+++|++|++++|+.+..++..+.... ....+.++++|++|.+.+.++++..
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK---AGGKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh---cCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999965433222222211 1235788999999999998887753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHH----HHHHHHHH-HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAG----FVNLLEVC-KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~g----t~~ll~~a-~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ....+..+..+++|+.+ +..+++.+ ++.+.+ +||++||...+...
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~-~iv~~ss~~~~~~~--------- 151 (262)
T PRK13394 82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGG-VVIYMGSVHSHEAS--------- 151 (262)
T ss_pred cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCc-EEEEEcchhhcCCC---------
Confidence 47999999997533 22334456788899999 66666666 555554 99999997544211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC---------cHHHHHHHHHcCCceEEEee
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM---------AYFFFTKDILQGKTIDVYKT 329 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~---------~~~~~~~~~~~g~~~~~~~~ 329 (476)
.+...|+.+|.+.+.+++.++++ .+++++++|||.+++|...... ....+...++
T Consensus 152 ---~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 218 (262)
T PRK13394 152 ---PLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQIPEQAKELGISEEEVVKKVM---------- 218 (262)
T ss_pred ---CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhhHhhhhccCCChHHHHHHHH----------
Confidence 34578999999999999988766 4899999999999998532110 0001111111
Q ss_pred CCCCceeEeceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCC
Q 011841 330 QDDREVARDFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+++...++|++++|++++++.++...... .| ++|++.++.
T Consensus 219 -~~~~~~~~~~~~~dva~a~~~l~~~~~~~~~g-----------~~~~~~~g~ 259 (262)
T PRK13394 219 -LGKTVDGVFTTVEDVAQTVLFLSSFPSAALTG-----------QSFVVSHGW 259 (262)
T ss_pred -hcCCCCCCCCCHHHHHHHHHHHcCccccCCcC-----------CEEeeCCce
Confidence 12344568999999999999999765432 22 889998764
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=238.25 Aligned_cols=261 Identities=21% Similarity=0.197 Sum_probs=184.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCC----CeEEEEeCCCCCCCchHHHHHHhhh--------cCCceEEEEeecCC---
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRG----DGVLGLDNFNSYYDPSLKRARQKLL--------QKHQVFIVEGDLND--- 181 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G----~~V~~~~R~~~~~~~~~~~~~~~~~--------~~~~v~~~~~Dl~d--- 181 (476)
..++|||||||||||.++++.|+++| ++|+++.|.....+. ..+...... ...+++++.+|+++
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~l 1048 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAG-LERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKF 1048 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHH-HHHHHHHHHHhCCCchhhhcceEEEeccCCCccC
Confidence 45899999999999999999999987 899999996543221 111111100 01379999999974
Q ss_pred ---HHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCC-----
Q 011841 182 ---APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT----- 253 (476)
Q Consensus 182 ---~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~----- 253 (476)
.+.+.++..++ |+|||+|+..... .........|+.|+.+++++|++.+.+ +|+|+||.++|+...
T Consensus 1049 gl~~~~~~~l~~~~--d~iiH~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~vSS~~v~~~~~~~~~~ 1122 (1389)
T TIGR03443 1049 GLSDEKWSDLTNEV--DVIIHNGALVHWV---YPYSKLRDANVIGTINVLNLCAEGKAK-QFSFVSSTSALDTEYYVNLS 1122 (1389)
T ss_pred CcCHHHHHHHHhcC--CEEEECCcEecCc---cCHHHHHHhHHHHHHHHHHHHHhCCCc-eEEEEeCeeecCcccccchh
Confidence 45566776665 9999999986532 233445568999999999999988876 999999999997421
Q ss_pred -------CCCCCCCCCC----CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCC
Q 011841 254 -------QVPFSESHRT----DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK 322 (476)
Q Consensus 254 -------~~~~~E~~~~----~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~ 322 (476)
...+.|+++. ..+.+.|+.+|+.+|.+++.+.+. |++++++|||.|||++.........++..++++.
T Consensus 1123 ~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~~~~~~~~~~~~~ 1201 (1389)
T TIGR03443 1123 DELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGKR-GLRGCIVRPGYVTGDSKTGATNTDDFLLRMLKGC 1201 (1389)
T ss_pred hhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHhC-CCCEEEECCCccccCCCcCCCCchhHHHHHHHHH
Confidence 1123343321 124467999999999999998764 9999999999999986543222222222232221
Q ss_pred -ceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCC
Q 011841 323 -TIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTK 399 (476)
Q Consensus 323 -~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~ 399 (476)
.+..+ .+....++|++|+|++++++.++.++....+ ..+||++++..+++.++++.+.+. |.+
T Consensus 1202 ~~~~~~---p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~l~~~-g~~ 1265 (1389)
T TIGR03443 1202 IQLGLI---PNINNTVNMVPVDHVARVVVAAALNPPKESE----------LAVAHVTGHPRIRFNDFLGTLKTY-GYD 1265 (1389)
T ss_pred HHhCCc---CCCCCccccccHHHHHHHHHHHHhCCcccCC----------CCEEEeCCCCCCcHHHHHHHHHHh-CCC
Confidence 11222 2245568999999999999999876532111 168999999999999999999764 544
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.6e-22 Score=191.49 Aligned_cols=227 Identities=17% Similarity=0.107 Sum_probs=164.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++|++.|+++|++|+++.|...... ....... ....++.++.+|+.|.+++.+++++.
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAA---EELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVE 80 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHH---HHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHH
Confidence 34579999999999999999999999999988777543211 1111111 12346889999999999999888653
Q ss_pred ---CccEEEEccccCChhh----hhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+|||+||...... ..+..+..++.|+.++.++++.+ ++.+.+ +||++||...+.+.
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~i~~SS~~~~~~~--------- 150 (249)
T PRK12825 81 RFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGG-RIVNISSVAGLPGW--------- 150 (249)
T ss_pred HcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEECccccCCCC---------
Confidence 6799999999754322 34455678999999999999887 455654 99999998876332
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+++.++++ .+++++++|||.++|+....... ..+... .... ....
T Consensus 151 ---~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~-~~~~~~---~~~~----------~~~~ 213 (249)
T PRK12825 151 ---PGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEATIE-EAREAK---DAET----------PLGR 213 (249)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccccc-hhHHhh---hccC----------CCCC
Confidence 34578999999999999888765 58999999999999986543211 111111 0001 1123
Q ss_pred ceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCcc
Q 011841 339 FTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
+++++|+++++..++.+.... .| ++|+++++..+
T Consensus 214 ~~~~~dva~~~~~~~~~~~~~~~g-----------~~~~i~~g~~~ 248 (249)
T PRK12825 214 SGTPEDIARAVAFLCSDASDYITG-----------QVIEVTGGVDV 248 (249)
T ss_pred CcCHHHHHHHHHHHhCccccCcCC-----------CEEEeCCCEee
Confidence 899999999999999765322 22 99999987643
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-23 Score=202.50 Aligned_cols=251 Identities=14% Similarity=0.086 Sum_probs=174.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++++||||||+|+||++++++|+++|++|++++|..+..++ ....... ..++.++.+|++|.++++++++..
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~ 79 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDR----AVAELRAQGAEVLGVRTDVSDAAQVEALADAALE 79 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHH----HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999985432222 1111111 336888999999999999888753
Q ss_pred ---CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHH----HHhcCCC-----CeEEEecCccccCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEV----CKSVNPQ-----PSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~-----~~~V~~SS~~vyg~~~~~~ 256 (476)
++|+||||||..... ...++++..+++|+.++.+++++ +.+.+.+ .+||++||.+.+...
T Consensus 80 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---- 155 (287)
T PRK06194 80 RFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP---- 155 (287)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC----
Confidence 579999999985432 23345567799999999997776 3444431 489999998776432
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhC-----CcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCC
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIYG-----LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g-----i~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (476)
.+...|+.+|.+.|.+++.+..+++ ++++.+.||.|..+.. ....+++..++ +
T Consensus 156 --------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~-----------~~~~~~~~~~~---~ 213 (287)
T PRK06194 156 --------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIW-----------QSERNRPADLA---N 213 (287)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccc-----------cccccCchhcc---c
Confidence 3456799999999999999887653 6777888877755421 22234555555 5
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCC
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 411 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~ 411 (476)
++.+.++|++++|.+..+... . . ++..|+++.+.+.+.........+....+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~-------~------------~---------~s~~dva~~i~~~~~~~~~~~~~~~~~~~ 265 (287)
T PRK06194 214 TAPPTRSQLIAQAMSQKAVGS-------G------------K---------VTAEEVAQLVFDAIRAGRFYIYSHPQALA 265 (287)
T ss_pred CccccchhhHHHHHHHhhhhc-------c------------C---------CCHHHHHHHHHHHHHcCCeEEEcCHHHHH
Confidence 567888899999887764211 0 1 68889999988877544333333222233
Q ss_pred CCCcccccHHHHH
Q 011841 412 DVPYTHANVSLAY 424 (476)
Q Consensus 412 ~~~~~~~d~~ka~ 424 (476)
+......|+++++
T Consensus 266 ~~~~~~~~~~~~~ 278 (287)
T PRK06194 266 SVRTRMEDIVQQR 278 (287)
T ss_pred HHHHHHHHHHHhc
Confidence 3344445555553
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=196.91 Aligned_cols=245 Identities=16% Similarity=0.103 Sum_probs=172.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||+++++.|+++|++|++++|..+.......... ......++.++.+|++|++++.++++..
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIE-ALKGAGAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH-hccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999985432211111111 0001246888999999999988888753
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ....++....+++|+.++..+++++.+. +. ++||++||...+...
T Consensus 84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~~sS~~~~~~~--------- 153 (276)
T PRK05875 84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGG-GSFVGISSIAASNTH--------- 153 (276)
T ss_pred cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEechhhcCCC---------
Confidence 67999999986421 1233445678899999999999876543 32 389999998875322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+.+.|+.+|.+.|.+++.+..++ ++++++||||.+.++..............+....+ ...
T Consensus 154 ---~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 218 (276)
T PRK05875 154 ---RWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPITESPELSADYRACTP------------LPR 218 (276)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccccCHHHHHHHHcCCC------------CCC
Confidence 346789999999999999988775 69999999999987743221111111122222211 223
Q ss_pred ceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCcc----cHHHHHHHHHHHhC
Q 011841 339 FTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSPV----PVGRLVSILENLLN 397 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~v----t~~el~~~l~~~~g 397 (476)
+++++|+|++++.++.++... .| +++++.++..+ +..|+++.+.+..|
T Consensus 219 ~~~~~dva~~~~~l~~~~~~~~~g-----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 271 (276)
T PRK05875 219 VGEVEDVANLAMFLLSDAASWITG-----------QVINVDGGHMLRRGPDFSSMLEPVFGADG 271 (276)
T ss_pred CcCHHHHHHHHHHHcCchhcCcCC-----------CEEEECCCeeccCCccHHHHHHHHhhHHH
Confidence 677999999999999876432 22 89999998776 66666666665544
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=196.07 Aligned_cols=239 Identities=14% Similarity=0.128 Sum_probs=174.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
++++||||||+|+||++++++|+++|++|++++|+.+. ....... ....+.++.+|++|.+++.++++.+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~----~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTAT----LADLAEK--YGDRLLPLALDVTDRAAVFAAVETAVEHF 75 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHh--ccCCeeEEEccCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999999999999985431 1111111 1336888999999999988877653
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... +.+.++.+..+++|+.++..+++.+ ++.+.+ +||++||.+.+.+.
T Consensus 76 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vsS~~~~~~~----------- 143 (275)
T PRK08263 76 GRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQISSIGGISAF----------- 143 (275)
T ss_pred CCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEcChhhcCCC-----------
Confidence 67999999998543 2344567788999999998888875 455554 99999998776432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC-------cHHHHHHHHHcCCceEEEeeCCCC
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM-------AYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.....|+.+|.+.+.+++.++.+ +|++++++|||.+.++...... ....+...+...
T Consensus 144 -~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 210 (275)
T PRK08263 144 -PMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAKRATPLDAYDTLREELAEQ------------ 210 (275)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccccCCCchhhhhHHHHHHHH------------
Confidence 34567999999999999888765 6899999999999876432110 111111111111
Q ss_pred ceeEec-eeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCC
Q 011841 334 EVARDF-TYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398 (476)
Q Consensus 334 ~~~~~~-v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~ 398 (476)
.....+ +.++|++++++.+++.+.... +.++..++..+++.++.+.+.+..+.
T Consensus 211 ~~~~~~~~~p~dva~~~~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (275)
T PRK08263 211 WSERSVDGDPEAAAEALLKLVDAENPPL------------RLFLGSGVLDLAKADYERRLATWEEW 264 (275)
T ss_pred HHhccCCCCHHHHHHHHHHHHcCCCCCe------------EEEeCchHHHHHHHHHHHHHHHHHHH
Confidence 112235 889999999999999876543 55655566789999999999886443
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-22 Score=207.57 Aligned_cols=243 Identities=15% Similarity=0.074 Sum_probs=169.5
Q ss_pred CCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh------cCCceEEEEeecCCHHHHH
Q 011841 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL------QKHQVFIVEGDLNDAPLLT 186 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~------~~~~v~~~~~Dl~d~~~l~ 186 (476)
..+.++++||||||+|+||++++++|+++|++|++++|+.+.............+ ...+++++.+|+.|.+++.
T Consensus 75 ~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~ 154 (576)
T PLN03209 75 LDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG 154 (576)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence 3445788999999999999999999999999999999965432211111111000 1135889999999999999
Q ss_pred HhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 187 KLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 187 ~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
+++.++ |+|||++|.... ...+....+++|+.|+.+|+++|++.+++ |||++||.+++... ..+. ....
T Consensus 155 ~aLggi--DiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VSSiga~~~g----~p~~--~~~s 223 (576)
T PLN03209 155 PALGNA--SVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVTSLGTNKVG----FPAA--ILNL 223 (576)
T ss_pred HHhcCC--CEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEccchhcccC----cccc--chhh
Confidence 999877 999999987432 11245567889999999999999999886 99999998763111 1011 1134
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHH
Q 011841 267 ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (476)
...|...|..+|..+.+ +|+++++||||+++++.+... ..+. +... .++......+..+|||
T Consensus 224 k~~~~~~KraaE~~L~~----sGIrvTIVRPG~L~tp~d~~~----------~t~~-v~~~---~~d~~~gr~isreDVA 285 (576)
T PLN03209 224 FWGVLCWKRKAEEALIA----SGLPYTIVRPGGMERPTDAYK----------ETHN-LTLS---EEDTLFGGQVSNLQVA 285 (576)
T ss_pred HHHHHHHHHHHHHHHHH----cCCCEEEEECCeecCCccccc----------cccc-eeec---cccccCCCccCHHHHH
Confidence 45677888888887764 699999999999998743311 0011 1111 0111122358899999
Q ss_pred HHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHH
Q 011841 347 KGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENL 395 (476)
Q Consensus 347 ~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~ 395 (476)
++++.++.++....+ ++|.+.++...+...+.+++..+
T Consensus 286 ~vVvfLasd~~as~~-----------kvvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 286 ELMACMAKNRRLSYC-----------KVVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred HHHHHHHcCchhccc-----------eEEEEEeCCCCCCCCHHHHHHhc
Confidence 999999987764433 89999997655555555555543
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-22 Score=190.28 Aligned_cols=227 Identities=15% Similarity=0.088 Sum_probs=165.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||.++++.|+++|++|++++|+.+.. ........ ....+.++.+|+.|.+++.++++++
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDA----AATAELVEAAGGKARARQVDVRDRAALKAAVAAGVE 79 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999964321 11111111 1235889999999999999988754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+|||++|.... ....+++...++.|+.++.++++.+. +.+. ++||++||...++..
T Consensus 80 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~ss~~~~~~~--------- 149 (251)
T PRK12826 80 DFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGG-GRIVLTSSVAGPRVG--------- 149 (251)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEEechHhhccC---------
Confidence 57999999988554 33445667789999999999998874 4454 489999998765111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
..+...|+.+|.+.+.+++.+..+ .|++++++|||.++||....... ..+...+....++ ..
T Consensus 150 --~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~~-~~~~~~~~~~~~~------------~~ 214 (251)
T PRK12826 150 --YPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLGD-AQWAEAIAAAIPL------------GR 214 (251)
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcCc-hHHHHHHHhcCCC------------CC
Confidence 134568999999999999988765 38999999999999986432211 1112222222221 14
Q ss_pred ceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCc
Q 011841 339 FTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
+++++|+|++++.++..+... .| ++|++.++.-
T Consensus 215 ~~~~~dva~~~~~l~~~~~~~~~g-----------~~~~~~~g~~ 248 (251)
T PRK12826 215 LGEPEDIAAAVLFLASDEARYITG-----------QTLPVDGGAT 248 (251)
T ss_pred CcCHHHHHHHHHHHhCccccCcCC-----------cEEEECCCcc
Confidence 789999999999988665432 22 8999987653
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=188.67 Aligned_cols=225 Identities=17% Similarity=0.206 Sum_probs=165.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+|+||||+|+||.++++.|+++|++|++++|..+.. ........ ...++.++.+|++|.++++++++..
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGA----ERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVS 79 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999954321 11111111 1236778999999999988877643
Q ss_pred ---CccEEEEccccCCh-------hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-------RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-------~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|+||||||.... +...+..+..+++|+.++.++++++... +. ++||++||.+.|.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~-------- 150 (250)
T PRK07774 80 AFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGG-GAIVNQSSTAAWL-------- 150 (250)
T ss_pred HhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC-cEEEEEecccccC--------
Confidence 57999999997431 2233455678899999999999987643 33 3899999988763
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
+.+.|+.+|.+.|.+++.+++++ |+++++++||.+..+....... ..+.+.+.++.+..
T Consensus 151 -------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~-~~~~~~~~~~~~~~---------- 212 (250)
T PRK07774 151 -------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTVTP-KEFVADMVKGIPLS---------- 212 (250)
T ss_pred -------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCccccccCC-HHHHHHHHhcCCCC----------
Confidence 34679999999999999998775 7999999999998876442211 23444444444332
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
.+..++|+|++++.++..... ..| ++||+.++..++
T Consensus 213 --~~~~~~d~a~~~~~~~~~~~~~~~g-----------~~~~v~~g~~~~ 249 (250)
T PRK07774 213 --RMGTPEDLVGMCLFLLSDEASWITG-----------QIFNVDGGQIIR 249 (250)
T ss_pred --CCcCHHHHHHHHHHHhChhhhCcCC-----------CEEEECCCeecc
Confidence 145689999999999876532 222 899999886543
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-22 Score=191.29 Aligned_cols=231 Identities=17% Similarity=0.121 Sum_probs=161.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
+++||||||+|+||+++++.|+++|++|++++|+.+.. +...... ....++.++.+|+.|.+++.++++..
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGA----EAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEF 76 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999954321 1111111 11246889999999999887766543
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+|||+||.... +...++.+..++.|+.++..+++.+ ++.+.+ +||++||...+...
T Consensus 77 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~~v~~ss~~~~~~~----------- 144 (255)
T TIGR01963 77 GGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWG-RIINIASAHGLVAS----------- 144 (255)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCe-EEEEEcchhhcCCC-----------
Confidence 47999999997543 2233445677889999988888876 455654 99999997655432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEe----eCCCCcee
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYK----TQDDREVA 336 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~~ 336 (476)
.....|+.+|.+.|.+++.++.+ .+++++++||+.++++... ..+........+.... ....+...
T Consensus 145 -~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (255)
T TIGR01963 145 -PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVE------KQIADQAKTRGIPEEQVIREVMLPGQPT 217 (255)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHH------HHHHhhhcccCCCchHHHHHHHHccCcc
Confidence 23467999999999999887765 3899999999999998421 1111111111110000 00113445
Q ss_pred EeceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCc
Q 011841 337 RDFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
+++++++|+|++++.++.++... .| ++|++.++..
T Consensus 218 ~~~~~~~d~a~~~~~~~~~~~~~~~g-----------~~~~~~~g~~ 253 (255)
T TIGR01963 218 KRFVTVDEVAETALFLASDAAAGITG-----------QAIVLDGGWT 253 (255)
T ss_pred ccCcCHHHHHHHHHHHcCccccCccc-----------eEEEEcCccc
Confidence 67999999999999999875332 22 8999987653
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-22 Score=191.51 Aligned_cols=229 Identities=18% Similarity=0.135 Sum_probs=160.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++||||||+|+||.+++++|+++|++|++++|+.+..+........ ...+++++.+|++|++++.++++..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 78 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK---AGGKAIGVAMDVTDEEAINAGIDYAVET 78 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh---cCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999965432221111111 2346889999999999998888753
Q ss_pred --CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+|||+||..... ...++.+..+++|+.++..+++. +++.+.+ +||++||...+.+.
T Consensus 79 ~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~iss~~~~~~~---------- 147 (258)
T PRK12429 79 FGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGG-RIINMASVHGLVGS---------- 147 (258)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCe-EEEEEcchhhccCC----------
Confidence 579999999974432 22334556788999995555554 4555654 99999998655322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcC--Cce-----EEEeeCCC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQG--KTI-----DVYKTQDD 332 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g--~~~-----~~~~~~~~ 332 (476)
.+.+.|+.+|.+.+.+++.+..+. +++++++|||.+++|.... .+...... .+. ..+ +.
T Consensus 148 --~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~ 216 (258)
T PRK12429 148 --AGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRK------QIPDLAKERGISEEEVLEDVL---LP 216 (258)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhh------hhhhhccccCCChHHHHHHHH---hc
Confidence 456789999999999998887654 7999999999999985321 01111100 000 000 11
Q ss_pred CceeEeceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCC
Q 011841 333 REVARDFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 333 ~~~~~~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~ 380 (476)
....+.+++++|+|++++.++...... .| +.|++.++
T Consensus 217 ~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g-----------~~~~~~~g 254 (258)
T PRK12429 217 LVPQKRFTTVEEIADYALFLASFAAKGVTG-----------QAWVVDGG 254 (258)
T ss_pred cCCccccCCHHHHHHHHHHHcCccccCccC-----------CeEEeCCC
Confidence 223457999999999999998764332 22 88999876
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-22 Score=192.89 Aligned_cols=266 Identities=22% Similarity=0.236 Sum_probs=177.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhh--------hcCCceEEEEeecC------CHH
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKL--------LQKHQVFIVEGDLN------DAP 183 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~--------~~~~~v~~~~~Dl~------d~~ 183 (476)
++||+||||||+|.+++++|+.+- .+|+|++|.++.... ..+..+.. .-..+|+++.+|+. +..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a-~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~ 79 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAA-LARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSER 79 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHH-HHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHH
Confidence 479999999999999999999985 499999997653211 22222211 22458999999997 445
Q ss_pred HHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCC----CCCC
Q 011841 184 LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQV----PFSE 259 (476)
Q Consensus 184 ~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~----~~~E 259 (476)
.+.++.+.+ |.|||||+..+. ...+.+....|+.||..+++.|.....+ .|.|+||++|+...... .++|
T Consensus 80 ~~~~La~~v--D~I~H~gA~Vn~---v~pYs~L~~~NVlGT~evlrLa~~gk~K-p~~yVSsisv~~~~~~~~~~~~~~~ 153 (382)
T COG3320 80 TWQELAENV--DLIIHNAALVNH---VFPYSELRGANVLGTAEVLRLAATGKPK-PLHYVSSISVGETEYYSNFTVDFDE 153 (382)
T ss_pred HHHHHhhhc--ceEEecchhhcc---cCcHHHhcCcchHhHHHHHHHHhcCCCc-eeEEEeeeeeccccccCCCcccccc
Confidence 688888888 999999998553 2455677889999999999999987765 79999999997654322 2332
Q ss_pred CCCC----CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC----CCcHHHHHHHHHcCCceEEEeeCC
Q 011841 260 SHRT----DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 260 ~~~~----~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~ 331 (476)
.++. ....++|++||+++|.++++.... |++++|+|||.|.|+.... ..++..|+..+++-+.++
T Consensus 154 ~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D~~~Rlv~~~~~lg~~P------ 226 (382)
T COG3320 154 ISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRDFLTRLVLGLLQLGIAP------ 226 (382)
T ss_pred ccccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccchHHHHHHHHHHHhCCCC------
Confidence 2221 245688999999999999999887 9999999999999986522 123335555555543332
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcCcCCC-CCCCCCCCCCceEEE-EcCCCcccHHHHHHHHHH--HhCCCc
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAGKSTG-SGGKKRGPAQLRVYN-LGNTSPVPVGRLVSILEN--LLNTKA 400 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g-~~~~~~~~~~~~i~n-i~~~~~vt~~el~~~l~~--~~g~~~ 400 (476)
+.....+.+.++++++++......+..... .+ ...+..+..|+ ..-|..+...++.+.+.+ ..+.+.
T Consensus 227 ~~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~--~~~~~~f~~~~~~~~~~~i~l~~~~~w~~~~~~a~~~~ 297 (382)
T COG3320 227 DSEYSLDMLPVDHVARAVVAPSVQVAEAIAALG--AHSDIRFNQLHMLTHPDEIGLDEYVDWLISLDIAGYPE 297 (382)
T ss_pred CcccchhhCccceeeEEeehhhhhHHHHHHHhc--cCccchhhheecccCCCccchhHHHHhHhhhhccCCch
Confidence 123334455555555444433333210000 00 00011113343 334788999999999888 444443
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-21 Score=186.19 Aligned_cols=223 Identities=17% Similarity=0.167 Sum_probs=159.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+|++|||||+|+||++++++|+++|++|++++|+.. ......... ....+.++.+|++|.+++.++++..
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-----VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVE 80 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-----HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998531 111111111 1336788999999999888777643
Q ss_pred ---CccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||... .....++.+..+++|+.++..+++.+ ++.+.. +||++||...++.
T Consensus 81 ~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~~sS~~~~~~--------- 150 (260)
T PRK12823 81 AFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGG-AIVNVSSIATRGI--------- 150 (260)
T ss_pred HcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-eEEEEcCccccCC---------
Confidence 6799999998531 12334456677899999887665544 445544 8999999887631
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC-----------CCCcHHHHHHHHHcCCceEE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR-----------PDMAYFFFTKDILQGKTIDV 326 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~-----------~~~~~~~~~~~~~~g~~~~~ 326 (476)
+...|+.+|.+.+.+++.++.++ |+++++|+||+|++|... ....+..+...+..+.++..
T Consensus 151 -----~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (260)
T PRK12823 151 -----NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVPRNAAPQSEQEKAWYQQIVDQTLDSSLMKR 225 (260)
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhHHhhccccccccccHHHHHHHHhccCCccc
Confidence 23469999999999999998776 899999999999997311 01123334444444444322
Q ss_pred EeeCCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 327 YKTQDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 327 ~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+.+++|+|++++.++..... .+| +++++.+++
T Consensus 226 ------------~~~~~dva~~~~~l~s~~~~~~~g-----------~~~~v~gg~ 258 (260)
T PRK12823 226 ------------YGTIDEQVAAILFLASDEASYITG-----------TVLPVGGGD 258 (260)
T ss_pred ------------CCCHHHHHHHHHHHcCcccccccC-----------cEEeecCCC
Confidence 44689999999998865432 222 889997764
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=191.38 Aligned_cols=243 Identities=17% Similarity=0.096 Sum_probs=166.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|++|||||+|+||+++++.|+++|++|++++|+.+..++ ...... ....+.++.+|++|.+++.++++.+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~----~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 79 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQ----AVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFR 79 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999986532222 111111 1235788999999999999888754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+..++||++||...+.+.
T Consensus 80 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~--------- 150 (275)
T PRK05876 80 LLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPN--------- 150 (275)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCC---------
Confidence 57999999997432 22344556788999999999998864 34433589999998766432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+.+.++.++ |+++++|+||.+.++........ .............. +.....++
T Consensus 151 ---~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~ 222 (275)
T PRK05876 151 ---AGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANSERI--RGAACAQSSTTGSP---GPLPLQDD 222 (275)
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccchhhh--cCcccccccccccc---cccccccc
Confidence 456789999999777777666543 89999999999988743211000 00000001111111 22334567
Q ss_pred ceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhC
Q 011841 339 FTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN 397 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g 397 (476)
+++++|+|++++.++.+. +.+.+.+ +.....+.+...+...
T Consensus 223 ~~~~~dva~~~~~ai~~~----------------~~~~~~~--~~~~~~~~~~~~~~~~ 263 (275)
T PRK05876 223 NLGVDDIAQLTADAILAN----------------RLYVLPH--AASRASIRRRFERIDR 263 (275)
T ss_pred CCCHHHHHHHHHHHHHcC----------------CeEEecC--hhhHHHHHHHHHHHHH
Confidence 899999999999999763 3344443 3455666666655544
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=182.73 Aligned_cols=308 Identities=18% Similarity=0.216 Sum_probs=238.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC-CCe-EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~-G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
....+|||||+-|.+|..++..|..+ |.+ |++.+..+ ..+...+ .--++..|+.|...+++++-+.+
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~K---------Pp~~V~~--~GPyIy~DILD~K~L~eIVVn~R 110 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVK---------PPANVTD--VGPYIYLDILDQKSLEEIVVNKR 110 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccC---------Cchhhcc--cCCchhhhhhccccHHHhhcccc
Confidence 44569999999999999999999877 654 55554321 1111111 33467789999999999998889
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
+|-+||..+..+. ..+.+.....++|+.|..|+++.|+++.. ++..-|+++.||+....--+.+-....|...||.+
T Consensus 111 IdWL~HfSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL--~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVS 187 (366)
T KOG2774|consen 111 IDWLVHFSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKL--KVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVS 187 (366)
T ss_pred cceeeeHHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCe--eEeecccccccCCCCCCCCCCCeeeecCceeechh
Confidence 9999999876332 23455556788999999999999999987 68889999999987655444444445889999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCC---C-CCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGP---W-GRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~---~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
|..+|.+-+.+.+++|+.+.++|.+.++.. + +..+.....|..+..+|+. .++ -..+.+...+|.+|+-+++
T Consensus 188 KVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pgggttdya~A~f~~Al~~gk~-tCy---lrpdtrlpmmy~~dc~~~~ 263 (366)
T KOG2774|consen 188 KVHAELLGEYFNHRFGVDFRSMRFPGIISATKPGGGTTDYAIAIFYDALQKGKH-TCY---LRPDTRLPMMYDTDCMASV 263 (366)
T ss_pred HHHHHHHHHHHHhhcCccceecccCcccccCCCCCCcchhHHHHHHHHHHcCCc-ccc---cCCCccCceeehHHHHHHH
Confidence 999999999999999999999998888763 3 3445566666666666664 444 3467889999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhC-CCccceeecCCCCCCCCcccccHHHHHHhcC
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN-TKAKKHVIRMPRNGDVPYTHANVSLAYKDFG 428 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG 428 (476)
+.++..+...-. .++||+++ -.+|.+|+++.+.+.+. .+..+.........|.+...+|.+.+++++-
T Consensus 264 ~~~~~a~~~~lk----------rr~ynvt~-~sftpee~~~~~~~~~p~~~i~y~~~srq~iad~wp~~~dds~ar~~wh 332 (366)
T KOG2774|consen 264 IQLLAADSQSLK----------RRTYNVTG-FSFTPEEIADAIRRVMPGFEIDYDICTRQSIADSWPMSLDDSEARTEWH 332 (366)
T ss_pred HHHHhCCHHHhh----------hheeeece-eccCHHHHHHHHHhhCCCceeecccchhhhhhhhcccccCchhHhhHHH
Confidence 999988766532 28999988 45999999999999874 3444443333445677778899999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHHcCC
Q 011841 429 YKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 429 ~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
|+-+++|...+.-+++..++++..
T Consensus 333 ~~h~~~l~~~i~~~i~~~~~n~~~ 356 (366)
T KOG2774|consen 333 EKHSLHLLSIISTVVAVHKSNLKL 356 (366)
T ss_pred HhhhhhHHHHHHHHHHHHHhhhhh
Confidence 999999999999999998888764
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=184.64 Aligned_cols=183 Identities=29% Similarity=0.345 Sum_probs=143.1
Q ss_pred EEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEEEc
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHL 200 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~ 200 (476)
|+|+||||++|++++++|+++|++|++++|+.+. ... ..+++++.+|+.|++.+.++++++ |+||++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~-------~~~----~~~~~~~~~d~~d~~~~~~al~~~--d~vi~~ 67 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSK-------AED----SPGVEIIQGDLFDPDSVKAALKGA--DAVIHA 67 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGG-------HHH----CTTEEEEESCTTCHHHHHHHHTTS--SEEEEC
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchh-------ccc----ccccccceeeehhhhhhhhhhhhc--chhhhh
Confidence 7999999999999999999999999999995431 111 569999999999999999999987 999999
Q ss_pred cccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 011841 201 AAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI 280 (476)
Q Consensus 201 Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~ 280 (476)
++.... +...+.+++++|++++++ +||++|+.++|+........+.. .....|...|..+|+.
T Consensus 68 ~~~~~~-------------~~~~~~~~~~a~~~~~~~-~~v~~s~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~e~~ 130 (183)
T PF13460_consen 68 AGPPPK-------------DVDAAKNIIEAAKKAGVK-RVVYLSSAGVYRDPPGLFSDEDK---PIFPEYARDKREAEEA 130 (183)
T ss_dssp CHSTTT-------------HHHHHHHHHHHHHHTTSS-EEEEEEETTGTTTCTSEEEGGTC---GGGHHHHHHHHHHHHH
T ss_pred hhhhcc-------------cccccccccccccccccc-cceeeeccccCCCCCcccccccc---cchhhhHHHHHHHHHH
Confidence 976322 277789999999999986 99999999999854332111111 1125688899888887
Q ss_pred HHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 281 AHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 281 ~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
+++ .++++++|||+.+||+.... ..+.. .++....++|+++|+|++++.++++
T Consensus 131 ~~~----~~~~~~ivrp~~~~~~~~~~----------------~~~~~--~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 131 LRE----SGLNWTIVRPGWIYGNPSRS----------------YRLIK--EGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp HHH----STSEEEEEEESEEEBTTSSS----------------EEEES--STSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred HHh----cCCCEEEEECcEeEeCCCcc----------------eeEEe--ccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 754 59999999999999985331 11111 1244556999999999999999875
|
... |
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=195.44 Aligned_cols=233 Identities=15% Similarity=0.096 Sum_probs=164.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++||||||+|+||.++++.|+++|++|++++|+.+.. ....... ...+.++.+|++|.+++.++++..
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~----~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARA----RLAALEI--GPAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHH----HHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999854321 1111111 236888999999999998888753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++.++++++... +...+||++||.....+
T Consensus 78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 146 (257)
T PRK07067 78 FGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRG----------- 146 (257)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCC-----------
Confidence 67999999997432 2234566778999999999999988543 22248999999653211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHc---CCceEEEeeCCCCcee
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ---GKTIDVYKTQDDREVA 336 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~ 336 (476)
..+...|+.+|.+.+.+++.++.+ +|+++++|+||.++++...... ........ +...... ++....
T Consensus 147 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~ 219 (257)
T PRK07067 147 -EALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQVD---ALFARYENRPPGEKKRLV---GEAVPL 219 (257)
T ss_pred -CCCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhhh---hhhhhccCCCHHHHHHHH---hhcCCC
Confidence 135678999999999999988775 5899999999999998432110 00000000 0000011 123345
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..+++++|+|++++.++..... ..| ++|++.++..+
T Consensus 220 ~~~~~~~dva~~~~~l~s~~~~~~~g-----------~~~~v~gg~~~ 256 (257)
T PRK07067 220 GRMGVPDDLTGMALFLASADADYIVA-----------QTYNVDGGNWM 256 (257)
T ss_pred CCccCHHHHHHHHHHHhCcccccccC-----------cEEeecCCEeC
Confidence 6789999999999999976433 223 89999887654
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-21 Score=190.10 Aligned_cols=231 Identities=16% Similarity=0.131 Sum_probs=166.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+|+||||||+|+||+++++.|+++|++|++..+..+... ........ ....++.++.+|++|.++++++++..
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQD--AAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHH--HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999998876443111 11111111 11346788999999999988887653
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++...- ...+||++||...|...
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~----------- 199 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQPS----------- 199 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccCCC-----------
Confidence 68999999996421 23456678899999999999999987532 12489999999887533
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.....|+.+|.+.+.+++.++.+ .|+++++|+||.|.++..............+....+ ...+.
T Consensus 200 -~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~p------------~~r~~ 266 (300)
T PRK06128 200 -PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSETP------------MKRPG 266 (300)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCCC------------CCCCc
Confidence 33467999999999999998876 489999999999999854321111222222222222 12367
Q ss_pred eHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 341 YIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
.++|+|.+++.++..... .+| ++|++.++..+
T Consensus 267 ~p~dva~~~~~l~s~~~~~~~G-----------~~~~v~gg~~~ 299 (300)
T PRK06128 267 QPVEMAPLYVLLASQESSYVTG-----------EVFGVTGGLLL 299 (300)
T ss_pred CHHHHHHHHHHHhCccccCccC-----------cEEeeCCCEeC
Confidence 889999999988865432 223 89999887654
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=191.66 Aligned_cols=232 Identities=18% Similarity=0.141 Sum_probs=161.0
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
++++||||||+|+||+++++.|+++|++|++++|..+.......... ......+++++.+|++|++++.+ ++..
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~ 79 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQAT-QLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEI 79 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH-hcCCCCceeEEecCCCCHHHHHH-HHHHHHhc
Confidence 45789999999999999999999999999999986432222111111 11112478999999999998876 5432
Q ss_pred -CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||..... ...++.+..+++|+.++.++++.+ ++.+.. +||++||...+.+.
T Consensus 80 ~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vsS~~~~~~~----------- 147 (280)
T PRK06914 80 GRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSG-KIINISSISGRVGF----------- 147 (280)
T ss_pred CCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEECcccccCCC-----------
Confidence 579999999975432 233455678889999998888875 555554 89999996543211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHH---HhCCcEEEEeeCcccCCCCCCC-----------CcHHHHHHHHHcCCceEEEee
Q 011841 264 DQPASLYAATKKAGEEIAHTYNH---IYGLALTGLRFFTVYGPWGRPD-----------MAYFFFTKDILQGKTIDVYKT 329 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~v~G~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~ 329 (476)
.+...|+.+|.+.+.+++.++. .+|++++++|||.++++..... ..+..++..+....
T Consensus 148 -~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 219 (280)
T PRK06914 148 -PGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLAENQSETTSPYKEYMKKIQKHI------- 219 (280)
T ss_pred -CCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhccccccccccccccchHHHHHHHHHHH-------
Confidence 3567899999999999998873 4589999999999998732211 01111111111100
Q ss_pred CCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHH
Q 011841 330 QDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVG 386 (476)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~ 386 (476)
......+++++|+|++++.+++++... ..|+++++..+++.
T Consensus 220 ---~~~~~~~~~~~dva~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~ 260 (280)
T PRK06914 220 ---NSGSDTFGNPIDVANLIVEIAESKRPK-------------LRYPIGKGVKLMIL 260 (280)
T ss_pred ---hhhhhccCCHHHHHHHHHHHHcCCCCC-------------cccccCCchHHHHH
Confidence 011235788999999999999886543 56888876655444
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=187.58 Aligned_cols=229 Identities=16% Similarity=0.116 Sum_probs=164.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||.+++++|+++|++|++++|+.+.... ....... ..++.++.+|++|.++++++++.+
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~----~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAA----AAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEA 83 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999986432211 1111111 235888999999999999988754
Q ss_pred ---CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+|||+||..... ...+..+..+++|+.++.++++++.+. +. ++||++||...+..
T Consensus 84 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~iss~~~~~~---------- 152 (255)
T PRK07523 84 EIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGA-GKIINIASVQSALA---------- 152 (255)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-eEEEEEccchhccC----------
Confidence 579999999975432 223445678889999999999987643 44 38999999764321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
..+...|+.+|.+.|.+++.++.+ +|+++++||||.+.++..........+...+.+..++ ..
T Consensus 153 --~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~------------~~ 218 (255)
T PRK07523 153 --RPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTPA------------GR 218 (255)
T ss_pred --CCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcCCC------------CC
Confidence 135678999999999999988764 5899999999999998532111111222222222221 23
Q ss_pred ceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 339 FTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
+..++|+|++++.++..... -+| +++++.++..++
T Consensus 219 ~~~~~dva~~~~~l~~~~~~~~~G-----------~~i~~~gg~~~~ 254 (255)
T PRK07523 219 WGKVEELVGACVFLASDASSFVNG-----------HVLYVDGGITAS 254 (255)
T ss_pred CcCHHHHHHHHHHHcCchhcCccC-----------cEEEECCCeecc
Confidence 67899999999999875432 222 889998876543
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-22 Score=189.39 Aligned_cols=231 Identities=16% Similarity=0.127 Sum_probs=158.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.+++++|||||+|+||.+++++|+++|++|++++|+.+.. ......... ...++.++.+|++|++++.++++..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~---~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPR---ANKVVAEIEAAGGRASAVGADLTDEESVAALMDTARE 80 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHh---HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999864321 111111111 1336788999999999998887642
Q ss_pred ---CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (476)
++|+||||||.... ...++...+++|+.++.++++++.+... ..+||++||....... ..+ ......
T Consensus 81 ~~~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~----~~~---~~~~~~ 151 (248)
T PRK07806 81 EFGGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIP----TVK---TMPEYE 151 (248)
T ss_pred hCCCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCc----ccc---CCcccc
Confidence 57999999986321 2234567788999999999999986422 2489999996432111 001 112356
Q ss_pred hHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHH
Q 011841 269 LYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (476)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (476)
.|+.+|.++|.+++.++.+ .|+++++++|+.+-++... .+... ..+-.+. ........+++++|+
T Consensus 152 ~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~------~~~~~---~~~~~~~---~~~~~~~~~~~~~dv 219 (248)
T PRK07806 152 PVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA------TLLNR---LNPGAIE---ARREAAGKLYTVSEF 219 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh------hhhcc---CCHHHHH---HHHhhhcccCCHHHH
Confidence 8999999999999998765 4799999999887765211 11110 0000000 000112468999999
Q ss_pred HHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 346 VKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 346 a~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
|++++.+++..... | ++|++++++.
T Consensus 220 a~~~~~l~~~~~~~-g-----------~~~~i~~~~~ 244 (248)
T PRK07806 220 AAEVARAVTAPVPS-G-----------HIEYVGGADY 244 (248)
T ss_pred HHHHHHHhhccccC-c-----------cEEEecCccc
Confidence 99999999865433 2 8999999764
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-21 Score=188.70 Aligned_cols=214 Identities=13% Similarity=0.076 Sum_probs=153.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+++|+||||+|+||++++++|+++|++|++++|+.+. ......... ....+.++.+|++|.+++.++++.+
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEK----CEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEE 83 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 455799999999999999999999999999999985432 111111111 1236888999999999999888743
Q ss_pred ---CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||..... ...++.+..+++|+.++.++++.+. +.+. .+||++||...|...
T Consensus 84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~-g~iv~isS~~~~~~~--------- 153 (274)
T PRK07775 84 ALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRR-GDLIFVGSDVALRQR--------- 153 (274)
T ss_pred hcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-ceEEEECChHhcCCC---------
Confidence 579999999975431 1234455678999999999988864 2333 389999998776432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC--CCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP--DMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.|.+++.+++++ |++++++|||.+.++.... ......+........ ....
T Consensus 154 ---~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~~~----------~~~~ 220 (274)
T PRK07775 154 ---PHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLPAEVIGPMLEDWAKWG----------QARH 220 (274)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCChhhhhHHHHHHHHhc----------cccc
Confidence 345679999999999999998765 8999999999986653211 111112222111110 1223
Q ss_pred EeceeHHHHHHHHHHHHhhc
Q 011841 337 RDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~ 356 (476)
..+++++|+|++++.+++++
T Consensus 221 ~~~~~~~dva~a~~~~~~~~ 240 (274)
T PRK07775 221 DYFLRASDLARAITFVAETP 240 (274)
T ss_pred ccccCHHHHHHHHHHHhcCC
Confidence 56899999999999999875
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=189.13 Aligned_cols=214 Identities=15% Similarity=0.124 Sum_probs=151.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
.+++||||||+|+||++++++|+++|++|++++|+.+. ...... ....++..+.+|++|.+++.++++.+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~----~~~l~~--~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 76 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAA----RADFEA--LHPDRALARLLDVTDFDAIDAVVADAEATF 76 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHH----HHHHHh--hcCCCeeEEEccCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999995421 111111 11236888999999999998888753
Q ss_pred -CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||..... ...++.+..+++|+.++.++++++. +.+.. +||++||.+.+...
T Consensus 77 ~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~iSS~~~~~~~----------- 144 (277)
T PRK06180 77 GPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRG-HIVNITSMGGLITM----------- 144 (277)
T ss_pred CCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCC-EEEEEecccccCCC-----------
Confidence 579999999984432 1223445679999999999999853 34443 89999997765322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC-----cHHHH---HHHHHcCCceEEEeeCCC
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM-----AYFFF---TKDILQGKTIDVYKTQDD 332 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~-----~~~~~---~~~~~~g~~~~~~~~~~~ 332 (476)
++...|+.+|.+.|.+++.++.+ +|++++++|||.+.++...... ....+ +.........
T Consensus 145 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 215 (277)
T PRK06180 145 -PGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMVRTPRSIADYDALFGPIRQAREA-------- 215 (277)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccccCCCCcHhHHHHHHHHHHHHHh--------
Confidence 35678999999999999988765 4899999999999887432110 11111 1111100000
Q ss_pred CceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 333 REVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 333 ~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
.....+..++|+|++++.+++++..
T Consensus 216 -~~~~~~~~~~dva~~~~~~l~~~~~ 240 (277)
T PRK06180 216 -KSGKQPGDPAKAAQAILAAVESDEP 240 (277)
T ss_pred -hccCCCCCHHHHHHHHHHHHcCCCC
Confidence 0112356799999999999987654
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-20 Score=179.93 Aligned_cols=226 Identities=16% Similarity=0.152 Sum_probs=162.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhcc---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDV--- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~--- 191 (476)
.++|+|+||||+|+||++++++|+++|++|++++|......+........... ...+.++.+|++|.+++.++++.
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999887544333322222222211 34688999999999998888763
Q ss_pred --CCccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH-----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 192 --VPFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK-----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 192 --~~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~-----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
.++|+|||+||.... ....++....+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 84 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~-------- 154 (249)
T PRK12827 84 EFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGG-RIVNIASVAGVRGN-------- 154 (249)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCe-EEEEECCchhcCCC--------
Confidence 257999999997542 22344566789999999999999987 34443 89999997765432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.+.+++.++.+. +++++++|||.++++........ ..+.+..+. .
T Consensus 155 ----~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~~~~----~~~~~~~~~------------~ 214 (249)
T PRK12827 155 ----RGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNAAPT----EHLLNPVPV------------Q 214 (249)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCcccccchH----HHHHhhCCC------------c
Confidence 345679999999999998887663 89999999999999864432211 122222211 1
Q ss_pred eceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
.+.+++|++++++.++....... .| +++++.++
T Consensus 215 ~~~~~~~va~~~~~l~~~~~~~~--~g--------~~~~~~~g 247 (249)
T PRK12827 215 RLGEPDEVAALVAFLVSDAASYV--TG--------QVIPVDGG 247 (249)
T ss_pred CCcCHHHHHHHHHHHcCcccCCc--cC--------cEEEeCCC
Confidence 24578999999999886543221 11 78888765
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=180.54 Aligned_cols=235 Identities=20% Similarity=0.115 Sum_probs=169.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~----- 192 (476)
++++|||||+|+||.++++.|+++|++|++++|+.... .... ......+++++.+|+.|.+++.++++.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~----~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAAL----AAFA-DALGDARFVPVACDLTDAASLAAALANAAAERG 76 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHH-HHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999854321 1111 1112346889999999999998888753
Q ss_pred CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+|||++|..... ...+.....+++|+.++.++++++. +.+. ++||++||...+..
T Consensus 77 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~sS~~~~~~------------- 142 (257)
T PRK07074 77 PVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSR-GAVVNIGSVNGMAA------------- 142 (257)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-eEEEEEcchhhcCC-------------
Confidence 579999999974321 1122334567899999999888773 3444 38999999654321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC-CcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.....|+.+|.+.+.+++.+++++ |++++++|||.++++..... .....+....... ....+|+
T Consensus 143 ~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 210 (257)
T PRK07074 143 LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARVAANPQVFEELKKW------------YPLQDFA 210 (257)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhcccccChHHHHHHHhc------------CCCCCCC
Confidence 112369999999999999988765 69999999999998843211 0112222222211 1235789
Q ss_pred eHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHH
Q 011841 341 YIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILEN 394 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~ 394 (476)
+++|++++++.++...... .| +++++.++..+...||.+.+.+
T Consensus 211 ~~~d~a~~~~~l~~~~~~~~~g-----------~~~~~~~g~~~~~~~~~~~~~~ 254 (257)
T PRK07074 211 TPDDVANAVLFLASPAARAITG-----------VCLPVDGGLTAGNREMARTLTL 254 (257)
T ss_pred CHHHHHHHHHHHcCchhcCcCC-----------cEEEeCCCcCcCChhhhhhhcc
Confidence 9999999999999653322 22 8899999999999999988764
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-21 Score=182.95 Aligned_cols=227 Identities=14% Similarity=0.088 Sum_probs=158.4
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEE-eCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~-~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.+++|+||||+|+||+++++.|+++|++|+++ +|+.+..+ ...... ....++.++.+|++|++++.++++.+
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAE----ETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDE 78 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHH----HHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999999998874 55432111 111111 11346889999999999999888764
Q ss_pred ---CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||..... ...+.....+++|+.++.++++++.. .+. ++||++||...+...
T Consensus 79 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~~sS~~~~~~~--------- 148 (250)
T PRK08063 79 EFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGG-GKIISLSSLGSIRYL--------- 148 (250)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-eEEEEEcchhhccCC---------
Confidence 589999999874321 12233445788999999999988764 333 399999997654221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.|.+++.+..+ .|+++++|+||.+..+..........+........+ ...
T Consensus 149 ---~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 213 (250)
T PRK08063 149 ---ENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHFPNREELLEDARAKTP------------AGR 213 (250)
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhccCchHHHHHHhcCCC------------CCC
Confidence 34568999999999999988765 489999999999987643211111112222211111 123
Q ss_pred ceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCcc
Q 011841 339 FTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
+++++|+|++++.++..+... .| +++++.++..+
T Consensus 214 ~~~~~dva~~~~~~~~~~~~~~~g-----------~~~~~~gg~~~ 248 (250)
T PRK08063 214 MVEPEDVANAVLFLCSPEADMIRG-----------QTIIVDGGRSL 248 (250)
T ss_pred CcCHHHHHHHHHHHcCchhcCccC-----------CEEEECCCeee
Confidence 688999999999999775432 22 88888887643
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=181.79 Aligned_cols=235 Identities=19% Similarity=0.151 Sum_probs=159.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++||||||+|+||+++++.|+++|++|++++|+.+. ........ ...++.++.+|++|++++.++++.+
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~----~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAA----LAATAARL-PGAKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHH-hcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 466899999999999999999999999999999995431 11111111 1226789999999999988887643
Q ss_pred --CccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+|||+||... .....++....++.|+.++.++++++. ..+.+++||++||.+...+.
T Consensus 84 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~--------- 154 (264)
T PRK12829 84 FGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGY--------- 154 (264)
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCC---------
Confidence 6799999999752 123345567889999999999988763 33432478888876532111
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEE-eeCCCCceeE
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVY-KTQDDREVAR 337 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~ 337 (476)
.+...|+.+|.+.|.+++.++.+. ++++++||||+++|+..... ....... .+...... ..........
T Consensus 155 ---~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~ 227 (264)
T PRK12829 155 ---PGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRV--IEARAQQ--LGIGLDEMEQEYLEKISLG 227 (264)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHH--hhhhhhc--cCCChhHHHHHHHhcCCCC
Confidence 344579999999999999987654 89999999999999853210 0000000 00000000 0000001123
Q ss_pred eceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 338 DFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.+++++|+++++..++.... ...| +.|+++++..
T Consensus 228 ~~~~~~d~a~~~~~l~~~~~~~~~g-----------~~~~i~~g~~ 262 (264)
T PRK12829 228 RMVEPEDIAATALFLASPAARYITG-----------QAISVDGNVE 262 (264)
T ss_pred CCCCHHHHHHHHHHHcCccccCccC-----------cEEEeCCCcc
Confidence 48999999999988886432 1122 8899998764
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-21 Score=187.30 Aligned_cols=236 Identities=15% Similarity=0.094 Sum_probs=160.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~----- 192 (476)
+++||||||+|+||.++++.|+++|++|++++|+............. ......+.++.+|++|.+++.++++..
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINA-EYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-hcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999999999999865322221111111 111236899999999999988877653
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCcc-ccCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSS-VYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~-vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... +...++.+..+++|+.++..+++++.+ .+..++||++||.. .++.
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~------------ 148 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS------------ 148 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC------------
Confidence 67999999987442 223345567889999998888877643 34334899999865 3321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHH--cCCceEEEeeCCCCceeEe
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDIL--QGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~ 338 (476)
.....|+.+|.+.+.+++.++.+ +|++++++|||.++++..... .++.+..... .+.....+ .++.....
T Consensus 149 -~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 223 (259)
T PRK12384 149 -KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQS-LLPQYAKKLGIKPDEVEQYY---IDKVPLKR 223 (259)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhhh-hhHHHHHhcCCChHHHHHHH---HHhCcccC
Confidence 23467999999999998888754 589999999999987643221 1121111100 00000001 11233456
Q ss_pred ceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 339 FTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
+++++|++++++.++.+... ..| ++|++.+++.
T Consensus 224 ~~~~~dv~~~~~~l~~~~~~~~~G-----------~~~~v~~g~~ 257 (259)
T PRK12384 224 GCDYQDVLNMLLFYASPKASYCTG-----------QSINVTGGQV 257 (259)
T ss_pred CCCHHHHHHHHHHHcCcccccccC-----------ceEEEcCCEE
Confidence 89999999999988765432 222 8899988763
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=178.36 Aligned_cols=216 Identities=16% Similarity=0.111 Sum_probs=159.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++||||||+|+||+++++.|+++|++|++++|+.....+.. . .....+++++.+|+.|.+++.++++..
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~----~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTL----P-GVPADALRIGGIDLVDPQAARRAVDEVNRQ 79 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHH----H-HHhhcCceEEEeecCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999653221111 1 122336788899999999998888753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+|||++|.... ....++....++.|+.++.++++++. +.+.+ +||++||...++..
T Consensus 80 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~---------- 148 (239)
T PRK12828 80 FGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGG-RIVNIGAGAALKAG---------- 148 (239)
T ss_pred hCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCC-EEEEECchHhccCC----------
Confidence 57999999986432 22334455678899999999988874 34544 99999999877532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.+.++ .+++++++|||.++++...... . ......|
T Consensus 149 --~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~~-----------------~-----~~~~~~~ 204 (239)
T PRK12828 149 --PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRADM-----------------P-----DADFSRW 204 (239)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhcC-----------------C-----chhhhcC
Confidence 34567999999999998887654 4899999999999987322100 0 0111237
Q ss_pred eeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 TYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
++++|+|++++.++.+.... .| +.+++.++..
T Consensus 205 ~~~~dva~~~~~~l~~~~~~~~g-----------~~~~~~g~~~ 237 (239)
T PRK12828 205 VTPEQIAAVIAFLLSDEAQAITG-----------ASIPVDGGVA 237 (239)
T ss_pred CCHHHHHHHHHHHhCcccccccc-----------eEEEecCCEe
Confidence 99999999999999765322 22 8888888754
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-20 Score=181.79 Aligned_cols=229 Identities=12% Similarity=0.033 Sum_probs=160.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+++||||||+|+||++++++|+++|++|++..|.... .......... ....+.++.+|++|++++.++++..
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAE---EMNETLKMVKENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChH---HHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 346899999999999999999999999999887764321 1111111111 1235778899999999888877643
Q ss_pred ---CccEEEEccccCChhh----hhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+|||+||...... ..+..+..+++|+.++..+++++.+.- ...+||++||...|.+.
T Consensus 81 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------ 148 (252)
T PRK06077 81 RYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPA------------ 148 (252)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCC------------
Confidence 6799999999743211 122235678999999999999876431 12489999998876432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCCC-cHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.+...|+.+|.+.|.+++.+++++ ++.+++++||.+.++...... ............ ......+++
T Consensus 149 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 217 (252)
T PRK06077 149 YGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESLFKVLGMSEKEFAEK-----------FTLMGKILD 217 (252)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhhhhcccccHHHHHHh-----------cCcCCCCCC
Confidence 567889999999999999998876 689999999999887421100 000000011100 111236899
Q ss_pred HHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 342 IDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
++|+|++++.++..+...+ ++|++.++..
T Consensus 218 ~~dva~~~~~~~~~~~~~g------------~~~~i~~g~~ 246 (252)
T PRK06077 218 PEEVAEFVAAILKIESITG------------QVFVLDSGES 246 (252)
T ss_pred HHHHHHHHHHHhCccccCC------------CeEEecCCee
Confidence 9999999999997654332 8999998753
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=181.34 Aligned_cols=229 Identities=15% Similarity=0.094 Sum_probs=162.0
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
+..+|++|||||+|+||+++++.|+++|++|+++++.... ......... .....+.++.+|++|.+++.++++.+
T Consensus 6 ~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 82 (258)
T PRK09134 6 MAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRD---EAEALAAEIRALGRRAVALQADLADEAEVRALVARAS 82 (258)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999999998774321 111111111 12346889999999999998888653
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN---PQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~---~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ....+..+..+++|+.++..+++++.... ..+++|+++|...+...
T Consensus 83 ~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~--------- 153 (258)
T PRK09134 83 AALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLN--------- 153 (258)
T ss_pred HHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCC---------
Confidence 57999999997432 22344567889999999999999876532 22489999886554321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
+....|+.+|.+.|.+++.+++++ ++++++++||.++.+... ....+ .......+. + ..
T Consensus 154 ---p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~---~~~~~-~~~~~~~~~--------~----~~ 214 (258)
T PRK09134 154 ---PDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQ---SPEDF-ARQHAATPL--------G----RG 214 (258)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCccc---ChHHH-HHHHhcCCC--------C----CC
Confidence 233579999999999999998765 489999999998765321 11222 222222211 1 24
Q ss_pred eeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHH
Q 011841 340 TYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVG 386 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~ 386 (476)
.+++|+|++++.+++.+... | +.|++.++..++|.
T Consensus 215 ~~~~d~a~~~~~~~~~~~~~-g-----------~~~~i~gg~~~~~~ 249 (258)
T PRK09134 215 STPEEIAAAVRYLLDAPSVT-G-----------QMIAVDGGQHLAWL 249 (258)
T ss_pred cCHHHHHHHHHHHhcCCCcC-C-----------CEEEECCCeecccc
Confidence 67999999999999865433 2 88999887765554
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=179.59 Aligned_cols=227 Identities=13% Similarity=0.050 Sum_probs=162.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++||||||+|+||.++++.|+++|++|++++|+.+..... ........++.++.+|+.|++++.++++.+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERV----AAEILAGGRAIAVAADVSDEADVEAAVAAALER 78 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH----HHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999965322211 111111346889999999999999888754
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+|||+||.... ....++.+..+++|+.++..+++.+.. .+. ++||++||...+.+.
T Consensus 79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~--------- 148 (251)
T PRK07231 79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGG-GAIVNVASTAGLRPR--------- 148 (251)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEEcChhhcCCC---------
Confidence 68999999997432 223455677899999998888776653 444 489999998876532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc--HHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA--YFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.+.+++.++.++ ++++++++||.+.++....... ...+...+.... ..
T Consensus 149 ---~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~------------~~ 213 (251)
T PRK07231 149 ---PGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAFMGEPTPENRAKFLATI------------PL 213 (251)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhhhcccChHHHHHHhcCC------------CC
Confidence 456789999999999999887664 8999999999997764221000 011111222211 12
Q ss_pred EeceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCc
Q 011841 337 RDFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+++++|+|++++.++...... .| +.+.+.++..
T Consensus 214 ~~~~~~~dva~~~~~l~~~~~~~~~g-----------~~~~~~gg~~ 249 (251)
T PRK07231 214 GRLGTPEDIANAALFLASDEASWITG-----------VTLVVDGGRC 249 (251)
T ss_pred CCCcCHHHHHHHHHHHhCccccCCCC-----------CeEEECCCcc
Confidence 34789999999999999665422 22 7778876643
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=180.40 Aligned_cols=225 Identities=16% Similarity=0.126 Sum_probs=160.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++++++||||+|+||.+++++|+++|++|+++.+... ............ ..++.++.+|++|++++.++++.+
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSK---EAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVN 80 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcH---HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999988765332 111111111111 236889999999999999888763
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ....+..+..+++|+.++..+++++.. .+. .+||++||...+.+.
T Consensus 81 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~--------- 150 (247)
T PRK12935 81 HFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEE-GRIISISSIIGQAGG--------- 150 (247)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEcchhhcCCC---------
Confidence 57999999998543 223356678899999999999998864 333 389999997543221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+++.+..++ ++++++++||.|.++.... ...........+ ...+.
T Consensus 151 ---~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~--~~~~~~~~~~~~------------~~~~~ 213 (247)
T PRK12935 151 ---FGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAE--VPEEVRQKIVAK------------IPKKR 213 (247)
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhh--ccHHHHHHHHHh------------CCCCC
Confidence 345789999999999998887765 8999999999998763221 101111122211 12345
Q ss_pred ceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 339 FTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+.+++|++++++.++.......| ++||+.++.
T Consensus 214 ~~~~edva~~~~~~~~~~~~~~g-----------~~~~i~~g~ 245 (247)
T PRK12935 214 FGQADEIAKGVVYLCRDGAYITG-----------QQLNINGGL 245 (247)
T ss_pred CcCHHHHHHHHHHHcCcccCccC-----------CEEEeCCCc
Confidence 89999999999998865332222 899998864
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-20 Score=180.41 Aligned_cols=227 Identities=17% Similarity=0.133 Sum_probs=160.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
.|+|+||||+|+||+++++.|+++|++|++++|..... ......... ...++.++.+|++|++++.++++.+
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEE---LAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAW 78 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhH---HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhc
Confidence 36899999999999999999999999999999864321 111111111 1236899999999999988887754
Q ss_pred -CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHHhc----C--C---CCeEEEecCccccCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKSV----N--P---QPSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~--~---~~~~V~~SS~~vyg~~~~~~ 256 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++... . . ..+||++||...+.+.
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---- 154 (256)
T PRK12745 79 GRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS---- 154 (256)
T ss_pred CCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCC----
Confidence 68999999997432 2234556778999999999998887432 1 1 2379999997764322
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.+.+.|+.+|.+.|.+++.++.+ +|++++++|||.++++..... ...+......+ ..
T Consensus 155 --------~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~--~~~~~~~~~~~-~~--------- 214 (256)
T PRK12745 155 --------PNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAPV--TAKYDALIAKG-LV--------- 214 (256)
T ss_pred --------CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCcccccc--chhHHhhhhhc-CC---------
Confidence 34568999999999999998865 589999999999998754321 11222211111 11
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
....+.+++|+++++..++..... ..| ++|++.++..+
T Consensus 215 -~~~~~~~~~d~a~~i~~l~~~~~~~~~G-----------~~~~i~gg~~~ 253 (256)
T PRK12745 215 -PMPRWGEPEDVARAVAALASGDLPYSTG-----------QAIHVDGGLSI 253 (256)
T ss_pred -CcCCCcCHHHHHHHHHHHhCCcccccCC-----------CEEEECCCeec
Confidence 123477999999999988765322 122 89999887543
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=182.42 Aligned_cols=213 Identities=12% Similarity=0.090 Sum_probs=154.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+|+|+||||+|+||+++++.|+++|++|++++|+.... +....... ...++..+.+|++|.+++.++++.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERL----DEVAAEIDDLGRRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999855321 11211111 1346889999999999998887653
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+|||+||.... ....++.+..+++|+.++..+++++.... ...+||++||...+.+.
T Consensus 79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~---------- 148 (258)
T PRK07890 79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQ---------- 148 (258)
T ss_pred HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCC----------
Confidence 68999999987432 23345667889999999999999986421 11389999998754321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC---------CcHHHHHHHHHcCCceEEEeeC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD---------MAYFFFTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~ 330 (476)
.+...|+.+|.+.+.+++.++.++ +++++++|||.+++|..... .....+...+.+.
T Consensus 149 --~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 217 (258)
T PRK07890 149 --PKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYFRHQAGKYGVTVEQIYAETAAN--------- 217 (258)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHhhhcccccCCCHHHHHHHHhhc---------
Confidence 345689999999999999988664 89999999999999843210 0001111111111
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
.....+.+++|++++++.++...
T Consensus 218 ---~~~~~~~~~~dva~a~~~l~~~~ 240 (258)
T PRK07890 218 ---SDLKRLPTDDEVASAVLFLASDL 240 (258)
T ss_pred ---CCccccCCHHHHHHHHHHHcCHh
Confidence 11224788999999999988753
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=178.68 Aligned_cols=226 Identities=15% Similarity=0.118 Sum_probs=157.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEE-eCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~-~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++++|+||||+|+||.++++.|+++|++|+++ .|..+ ........... ...++++.+|++|.+++.++++..
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~----~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~ 79 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQ----AADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLK 79 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH----HHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHH
Confidence 456899999999999999999999999999886 45322 11111111111 246889999999999988887742
Q ss_pred ----------CccEEEEccccCChhh----hhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCC
Q 011841 193 ----------PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 193 ----------~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
++|+|||+||...... ..+..+..+++|+.++.++++++.+.- ...+||++||..++.+.
T Consensus 80 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~----- 154 (254)
T PRK12746 80 NELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGF----- 154 (254)
T ss_pred HHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCC-----
Confidence 5799999999754321 223345678899999999999887531 11389999998876432
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
.+...|+.+|.+.|.+++.+..+ .++++++++||.++++..........+. ...... .
T Consensus 155 -------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~-~~~~~~-----------~ 215 (254)
T PRK12746 155 -------TGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKLLDDPEIR-NFATNS-----------S 215 (254)
T ss_pred -------CCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhhccChhHH-HHHHhc-----------C
Confidence 45567999999999998888765 4799999999999987432100001111 111111 1
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
....+++++|+|+++..++.++.. ..| ++|++.++
T Consensus 216 ~~~~~~~~~dva~~~~~l~~~~~~~~~g-----------~~~~i~~~ 251 (254)
T PRK12746 216 VFGRIGQVEDIADAVAFLASSDSRWVTG-----------QIIDVSGG 251 (254)
T ss_pred CcCCCCCHHHHHHHHHHHcCcccCCcCC-----------CEEEeCCC
Confidence 123567899999999888876432 122 88999875
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.6e-21 Score=183.70 Aligned_cols=226 Identities=16% Similarity=0.151 Sum_probs=159.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++++||||+|+||++++++|+++|++|++++|+.+.... ..........+.++.+|++|++++.++++..
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~----~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAER----VAAAIAAGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHH----HHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999986432211 1111112346889999999999999888753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+|||++|.... ....++.+..+++|+.++.++.+.+ ++.+.+ +||++||...+.+.
T Consensus 79 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~ii~~sS~~~~~~~---------- 147 (252)
T PRK06138 79 WGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGG-SIVNTASQLALAGG---------- 147 (252)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCe-EEEEECChhhccCC----------
Confidence 67999999997542 2233455677999999987777664 445554 89999997643221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCC---cHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM---AYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.+.+++.++.++ |++++++|||.++++...... ..+........+. ...
T Consensus 148 --~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 214 (252)
T PRK06138 148 --RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIFARHADPEALREALRAR-----------HPM 214 (252)
T ss_pred --CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhhccccChHHHHHHHHhc-----------CCC
Confidence 345779999999999999998765 899999999999988432100 0001111111110 111
Q ss_pred EeceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~ 380 (476)
..+++++|++++++.++.++... .| ..+.+.++
T Consensus 215 ~~~~~~~d~a~~~~~l~~~~~~~~~g-----------~~~~~~~g 248 (252)
T PRK06138 215 NRFGTAEEVAQAALFLASDESSFATG-----------TTLVVDGG 248 (252)
T ss_pred CCCcCHHHHHHHHHHHcCchhcCccC-----------CEEEECCC
Confidence 23788999999999999886532 22 67777655
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-20 Score=176.78 Aligned_cols=225 Identities=16% Similarity=0.107 Sum_probs=161.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC---
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
++|+||||||+|+||.++++.|+++|++|++++|+...... ...... ...++.++.+|+.|++++.+++++.
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEA----LAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEA 79 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHH----HHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999996532211 111111 2346889999999999988887753
Q ss_pred --CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+|||++|..... ...+.....++.|+.++.++++.+. +.+.+ +||++||.....+
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~-~ii~~ss~~~~~~----------- 147 (246)
T PRK05653 80 FGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYG-RIVNISSVSGVTG----------- 147 (246)
T ss_pred hCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEECcHHhccC-----------
Confidence 579999999875431 2233456778999999999998874 45554 9999999754321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
..+...|+.+|.+.|.+++.+.++ .+++++++|||.++++.... ....+....... .....+
T Consensus 148 -~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~--~~~~~~~~~~~~------------~~~~~~ 212 (246)
T PRK05653 148 -NPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG--LPEEVKAEILKE------------IPLGRL 212 (246)
T ss_pred -CCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh--hhHHHHHHHHhc------------CCCCCC
Confidence 145577999999999999888765 38999999999999985432 111111111111 112457
Q ss_pred eeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 TYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
++++|++++++.++....... .| ++|+++++..
T Consensus 213 ~~~~dva~~~~~~~~~~~~~~--~g--------~~~~~~gg~~ 245 (246)
T PRK05653 213 GQPEEVANAVAFLASDAASYI--TG--------QVIPVNGGMY 245 (246)
T ss_pred cCHHHHHHHHHHHcCchhcCc--cC--------CEEEeCCCee
Confidence 899999999999986543321 11 8999988753
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=180.73 Aligned_cols=226 Identities=23% Similarity=0.204 Sum_probs=163.5
Q ss_pred EEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEEEc
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHL 200 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~ 200 (476)
|+|+||||.+|+.+++.|++.|++|++++|+. .......+...+++++.+|+.|.+++.++|+++ |+||.+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-------~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~--d~v~~~ 71 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDP-------SSDRAQQLQALGAEVVEADYDDPESLVAALKGV--DAVFSV 71 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSS-------HHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTC--SEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEecc-------chhhhhhhhcccceEeecccCCHHHHHHHHcCC--ceEEee
Confidence 79999999999999999999999999999955 222333344458999999999999999999998 999998
Q ss_pred cccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 011841 201 AAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI 280 (476)
Q Consensus 201 Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~ 280 (476)
.+.... ..+....+++++|+++|++ +||+.|-...+... ... .|....-..|...|++
T Consensus 72 ~~~~~~------------~~~~~~~~li~Aa~~agVk-~~v~ss~~~~~~~~--------~~~-~p~~~~~~~k~~ie~~ 129 (233)
T PF05368_consen 72 TPPSHP------------SELEQQKNLIDAAKAAGVK-HFVPSSFGADYDES--------SGS-EPEIPHFDQKAEIEEY 129 (233)
T ss_dssp SSCSCC------------CHHHHHHHHHHHHHHHT-S-EEEESEESSGTTTT--------TTS-TTHHHHHHHHHHHHHH
T ss_pred cCcchh------------hhhhhhhhHHHhhhccccc-eEEEEEeccccccc--------ccc-cccchhhhhhhhhhhh
Confidence 876321 1455678999999999986 99865544443111 011 2334455678888887
Q ss_pred HHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHH--HHHcCC-ceEEEeeCCCCceeEece-eHHHHHHHHHHHHhhc
Q 011841 281 AHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTK--DILQGK-TIDVYKTQDDREVARDFT-YIDDVVKGCVGALDTA 356 (476)
Q Consensus 281 ~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~--~~~~g~-~~~~~~~~~~~~~~~~~v-~v~Dva~a~~~~l~~~ 356 (476)
+++ .++++++||+|..+..... .+.. .+...+ .+.++ ++++....++ ..+|+++++..++.++
T Consensus 130 l~~----~~i~~t~i~~g~f~e~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~Dvg~~va~il~~p 196 (233)
T PF05368_consen 130 LRE----SGIPYTIIRPGFFMENLLP------PFAPVVDIKKSKDVVTLP---GPGNQKAVPVTDTRDVGRAVAAILLDP 196 (233)
T ss_dssp HHH----CTSEBEEEEE-EEHHHHHT------TTHHTTCSCCTSSEEEEE---TTSTSEEEEEEHHHHHHHHHHHHHHSG
T ss_pred hhh----ccccceeccccchhhhhhh------hhcccccccccceEEEEc---cCCCccccccccHHHHHHHHHHHHcCh
Confidence 776 4999999999987754211 0111 111122 34555 5566666665 9999999999999998
Q ss_pred CcC-CCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccc
Q 011841 357 GKS-TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK 402 (476)
Q Consensus 357 ~~~-~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~ 402 (476)
... .+ +.+.+++ +.+|++|+++++++.+|++.++
T Consensus 197 ~~~~~~-----------~~~~~~~-~~~t~~eia~~~s~~~G~~v~y 231 (233)
T PF05368_consen 197 EKHNNG-----------KTIFLAG-ETLTYNEIAAILSKVLGKKVKY 231 (233)
T ss_dssp GGTTEE-----------EEEEEGG-GEEEHHHHHHHHHHHHTSEEEE
T ss_pred HHhcCC-----------EEEEeCC-CCCCHHHHHHHHHHHHCCccEE
Confidence 765 32 7888866 7899999999999999998654
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-20 Score=181.53 Aligned_cols=231 Identities=14% Similarity=0.091 Sum_probs=160.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||+|+||++++++|+++|++|++++|..+. ............++.++.+|++|.+++.++++.+
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDL----GQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999985321 1111222222346899999999999998888743
Q ss_pred --CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHHhcC---CCCeEEEecCccc-cCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKSVN---PQPSIVWASSSSV-YGLNTQVPFSES 260 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~---~~~~~V~~SS~~v-yg~~~~~~~~E~ 260 (476)
++|+||||||.... +...++.+..+++|+.++.++++++.... ...++|++||... ++.
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------- 162 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG--------- 162 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC---------
Confidence 67999999997432 22345667899999999999998775321 1238999988653 321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC---CC-cHHHHHHH----HHcCCceEEEee
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP---DM-AYFFFTKD----ILQGKTIDVYKT 329 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~---~~-~~~~~~~~----~~~g~~~~~~~~ 329 (476)
.....|+.+|.+.|.+++.++.++ |+++++++||.+.++.... +. .....+.. ...+.++
T Consensus 163 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----- 233 (280)
T PLN02253 163 ----LGPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHLPEDERTEDALAGFRAFAGKNANL----- 233 (280)
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccccccccccccchhhhhhhhHHHhhcCCCC-----
Confidence 223579999999999999988775 7999999999998763211 10 00111111 1111111
Q ss_pred CCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccH
Q 011841 330 QDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPV 385 (476)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~ 385 (476)
....++++|+|++++.++..... ..| +++++.++...+.
T Consensus 234 ------~~~~~~~~dva~~~~~l~s~~~~~i~G-----------~~i~vdgG~~~~~ 273 (280)
T PLN02253 234 ------KGVELTVDDVANAVLFLASDEARYISG-----------LNLMIDGGFTCTN 273 (280)
T ss_pred ------cCCCCCHHHHHHHHHhhcCcccccccC-----------cEEEECCchhhcc
Confidence 12247899999999998865332 222 7888887754443
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-19 Score=174.67 Aligned_cols=223 Identities=20% Similarity=0.187 Sum_probs=160.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
.++++++||||+|+||.++++.|+++|++|++++|+.+. .. ......++.++.+|++|.+++.++++.. ++
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~----~~----~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAA----LD----RLAGETGCEPLRLDVGDDAAIRAALAAAGAF 78 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHH----HH----HHHHHhCCeEEEecCCCHHHHHHHHHHhCCC
Confidence 456899999999999999999999999999999985321 11 1111224678899999999999888753 57
Q ss_pred cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 195 d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
|+|||+||.... +...++.+..+.+|+.++.++++++.+. +..++||++||...+.+. .+
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~ 146 (245)
T PRK07060 79 DGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL------------PD 146 (245)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC------------CC
Confidence 999999997432 2233456677889999999999987642 222489999998765432 34
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
...|+.+|.+.|.+++.++.++ +++++.+|||.++++..............+... .....+++++
T Consensus 147 ~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 214 (245)
T PRK07060 147 HLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAA------------IPLGRFAEVD 214 (245)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhc------------CCCCCCCCHH
Confidence 5679999999999999988654 799999999999998532110001111112211 1123489999
Q ss_pred HHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCC
Q 011841 344 DVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 344 Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
|++++++.++..+... +| +++++.++.
T Consensus 215 d~a~~~~~l~~~~~~~~~G-----------~~~~~~~g~ 242 (245)
T PRK07060 215 DVAAPILFLLSDAASMVSG-----------VSLPVDGGY 242 (245)
T ss_pred HHHHHHHHHcCcccCCccC-----------cEEeECCCc
Confidence 9999999999765432 22 888887764
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-20 Score=179.90 Aligned_cols=207 Identities=16% Similarity=0.146 Sum_probs=147.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
++++|+||||+|+||++++++|+++|++|++++|+.+. .+. ....+++++.+|++|.++++++++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~----l~~-----~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 72 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDK----MED-----LASLGVHPLSLDVTDEASIKAAVDTIIAEE 72 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHH-----HHhCCCeEEEeeCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999999999999999985421 111 11236889999999999998888743
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHH----HHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLL----EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll----~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... +.+.++.+..+++|+.++..++ +.+++.+.. +||++||.+.+...
T Consensus 73 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g-~iv~isS~~~~~~~----------- 140 (273)
T PRK06182 73 GRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSG-RIINISSMGGKIYT----------- 140 (273)
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcchhhcCCC-----------
Confidence 67999999997432 2234566788999999855544 455666654 99999997643211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCC----------CcHHH----HHHHHHcCCceEE
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD----------MAYFF----FTKDILQGKTIDV 326 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~----------~~~~~----~~~~~~~g~~~~~ 326 (476)
+....|+.+|.+.+.+++.++.+ +|++++++|||.+.++..... ..+.. +...+..
T Consensus 141 -~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 213 (273)
T PRK06182 141 -PLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAADHLLKTSGNGAYAEQAQAVAASMRS------ 213 (273)
T ss_pred -CCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhhhhhcccccccchHHHHHHHHHHHHH------
Confidence 23457999999999998877644 589999999999998753210 00000 0011110
Q ss_pred EeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 327 YKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 327 ~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
......+..++|+|++++.++....
T Consensus 214 ------~~~~~~~~~~~~vA~~i~~~~~~~~ 238 (273)
T PRK06182 214 ------TYGSGRLSDPSVIADAISKAVTARR 238 (273)
T ss_pred ------hhccccCCCHHHHHHHHHHHHhCCC
Confidence 1112346799999999999998643
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=179.93 Aligned_cols=229 Identities=15% Similarity=0.062 Sum_probs=161.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.+++++|||||+|+||.+++++|+++|++|++++|..+.. ......... ....++.++.+|++|.+++.++++.+
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEE--DAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchh--hHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999987643211 111111111 11336788999999999988877643
Q ss_pred ---CccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|++|||||... ...+.++.+..+++|+.++..+++++...- ...+||++||...+...
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~~~----------- 193 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQPS----------- 193 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhccCC-----------
Confidence 5799999998632 133456677899999999999999886431 12489999998876432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.....|+.+|.+.+.+++.++.+ +|+++++|+||+|+++..............+....+. ..+.
T Consensus 194 -~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~------------~r~~ 260 (294)
T PRK07985 194 -PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPM------------KRAG 260 (294)
T ss_pred -CCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccCCCHHHHHHHhccCCC------------CCCC
Confidence 23467999999999999998876 4899999999999998532111111122222221111 2356
Q ss_pred eHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 341 YIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.++|+|++++.++..... .+| +++.+.++.
T Consensus 261 ~pedva~~~~fL~s~~~~~itG-----------~~i~vdgG~ 291 (294)
T PRK07985 261 QPAELAPVYVYLASQESSYVTA-----------EVHGVCGGE 291 (294)
T ss_pred CHHHHHHHHHhhhChhcCCccc-----------cEEeeCCCe
Confidence 789999999999876432 233 778777764
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-20 Score=175.85 Aligned_cols=224 Identities=13% Similarity=0.076 Sum_probs=159.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC---
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
+++++|||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|+.|.++++++++..
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 77 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAA----EKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQA 77 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHH----HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999854321 11111111 1346899999999999998887643
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+|||+||.... ....+..+..+++|+.++.++++++. +.+. ++||++||...+...
T Consensus 78 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~iss~~~~~~~---------- 146 (250)
T TIGR03206 78 LGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGA-GRIVNIASDAARVGS---------- 146 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-eEEEEECchhhccCC----------
Confidence 57999999986432 12233445679999999999888764 4444 389999998877543
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.....|+.+|.+.+.+++.++++. +++++++|||.++++..... .....+...+....+.
T Consensus 147 --~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 213 (250)
T TIGR03206 147 --SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPL----------- 213 (250)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCc-----------
Confidence 234679999999999999888764 89999999999998842110 0001122222222211
Q ss_pred eEeceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~ 380 (476)
..+..++|+|+++..++..+... .| +++++.++
T Consensus 214 -~~~~~~~dva~~~~~l~~~~~~~~~g-----------~~~~~~~g 247 (250)
T TIGR03206 214 -GRLGQPDDLPGAILFFSSDDASFITG-----------QVLSVSGG 247 (250)
T ss_pred -cCCcCHHHHHHHHHHHcCcccCCCcC-----------cEEEeCCC
Confidence 12456799999999988764322 22 88998775
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-20 Score=177.95 Aligned_cols=232 Identities=16% Similarity=0.118 Sum_probs=157.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+|+||||||+|+||+++++.|+++|++|++++|..+..+........ ......+.++.+|++|++++.++++..
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGK-EFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHh-hcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999865432221111111 112235677899999999999888753
Q ss_pred --CccEEEEccccCCh-------hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-------RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-------~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+|||||+.... ....+..+..+++|+.++..+++++ ++.+.. +||++||.+.+..... ...+
T Consensus 81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~~~-~~~~ 158 (256)
T PRK09186 81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGG-NLVNISSIYGVVAPKF-EIYE 158 (256)
T ss_pred cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc-eEEEEechhhhccccc-hhcc
Confidence 37999999975321 2223445677888998877666654 445554 9999999765432211 2223
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
+.+. .....|+.+|.+.+.+++.++.+ .++++++++||.++++.. ..+........+ .
T Consensus 159 ~~~~-~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~------~~~~~~~~~~~~------------~ 219 (256)
T PRK09186 159 GTSM-TSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQP------EAFLNAYKKCCN------------G 219 (256)
T ss_pred cccc-CCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCC------HHHHHHHHhcCC------------c
Confidence 3332 23347999999999999888776 479999999999886531 112222221110 1
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
..+++++|+|++++.++..... .+| +++.+.++
T Consensus 220 ~~~~~~~dva~~~~~l~~~~~~~~~g-----------~~~~~~~g 253 (256)
T PRK09186 220 KGMLDPDDICGTLVFLLSDQSKYITG-----------QNIIVDDG 253 (256)
T ss_pred cCCCCHHHhhhhHhheeccccccccC-----------ceEEecCC
Confidence 2378999999999999976533 222 77777665
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=174.07 Aligned_cols=212 Identities=14% Similarity=0.069 Sum_probs=155.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc----
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV---- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---- 191 (476)
.++|.|+||||+++||.+++++|.++|++|++..|+.+.+++ ...+..+ ..+..+..|++|.++++++++.
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~----la~~~~~-~~~~~~~~DVtD~~~~~~~i~~~~~~ 78 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEA----LADEIGA-GAALALALDVTDRAAVEAAIEALPEE 78 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHH----HHHhhcc-CceEEEeeccCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999996653332 2222222 4689999999999987766653
Q ss_pred C-CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 192 V-PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 192 ~-~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
. ++|++|||||.+-. ....++++.++++|+.|+.++.++. .+.+.. +||++||++-. .
T Consensus 79 ~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G-~IiN~~SiAG~--~---------- 145 (246)
T COG4221 79 FGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSG-HIINLGSIAGR--Y---------- 145 (246)
T ss_pred hCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCc-eEEEecccccc--c----------
Confidence 2 58999999998543 2345667789999999988888774 455554 99999998731 1
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc--HHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA--YFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
+.+..+.|+.+|++...+.+.++.+. +++++.|.||.|-......-.+ -..-.+... ...
T Consensus 146 ~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v~~~g~~~~~~~~y---------------~~~ 210 (246)
T COG4221 146 PYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTVRFEGDDERADKVY---------------KGG 210 (246)
T ss_pred cCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccccCCchhhhHHHHh---------------ccC
Confidence 22556789999999999999888775 7999999999995542110000 001111111 123
Q ss_pred eceeHHHHHHHHHHHHhhcCcCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGKST 360 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~~~ 360 (476)
..+..+|+|++++.++..|..-.
T Consensus 211 ~~l~p~dIA~~V~~~~~~P~~vn 233 (246)
T COG4221 211 TALTPEDIAEAVLFAATQPQHVN 233 (246)
T ss_pred CCCCHHHHHHHHHHHHhCCCccc
Confidence 46888999999999999987653
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=178.15 Aligned_cols=228 Identities=13% Similarity=0.131 Sum_probs=164.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||.+++++|+++|++|++++|......+....... ....++.++.+|++|.+.+.++++..
T Consensus 44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVE--KEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHH--hcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999865321111111111 11236888999999999998888653
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... +.+.++....+++|+.++.++++++... ....+||++||...|...
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~~------------ 189 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEGN------------ 189 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCCC------------
Confidence 67999999997432 2233455678999999999999998653 112489999998877543
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.....|+.+|.+.+.+++.++.++ |++++.|+||.++++....... ......+.. ......+.+
T Consensus 190 ~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~~~-~~~~~~~~~------------~~~~~~~~~ 256 (290)
T PRK06701 190 ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSDFD-EEKVSQFGS------------NTPMQRPGQ 256 (290)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccccC-HHHHHHHHh------------cCCcCCCcC
Confidence 233579999999999999998875 8999999999999874332111 111222211 112245789
Q ss_pred HHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 342 IDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
++|+|++++.++..... .+| .++++.++.
T Consensus 257 ~~dva~~~~~ll~~~~~~~~G-----------~~i~idgg~ 286 (290)
T PRK06701 257 PEELAPAYVFLASPDSSYITG-----------QMLHVNGGV 286 (290)
T ss_pred HHHHHHHHHHHcCcccCCccC-----------cEEEeCCCc
Confidence 99999999999887532 222 788887753
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=175.73 Aligned_cols=213 Identities=18% Similarity=0.098 Sum_probs=151.2
Q ss_pred CCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
..+.++|+|+||||+|+||++++++|+++|++|++++|..... ..... .. ...+.++.+|++|.+++.++++..
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~----~~~~~-~~-~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERG----SKVAK-AL-GENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHH----HHHHH-Hc-CCceEEEEccCCCHHHHHHHHHHH
Confidence 3446789999999999999999999999999999998743211 11111 11 236889999999999887766543
Q ss_pred -----CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCccccCCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~~~--~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||.... ....++++..+++|+.++.++++++... ....+||++||...+...
T Consensus 79 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~------- 151 (255)
T PRK05717 79 LGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSE------- 151 (255)
T ss_pred HHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCC-------
Confidence 57999999997532 1234456789999999999999998631 112389999997754322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.....|+.+|.+.+.+++.++.++ ++++++|+||.+.++....... ..+.. ..... .. ..
T Consensus 152 -----~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~~~-~~~~~-~~~~~---~~--------~~ 213 (255)
T PRK05717 152 -----PDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQRRA-EPLSE-ADHAQ---HP--------AG 213 (255)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccccc-hHHHH-HHhhc---CC--------CC
Confidence 234679999999999999998886 4899999999999874321111 11111 11110 00 12
Q ss_pred eceeHHHHHHHHHHHHhhc
Q 011841 338 DFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~ 356 (476)
.+.+++|++.+++.++...
T Consensus 214 ~~~~~~~va~~~~~l~~~~ 232 (255)
T PRK05717 214 RVGTVEDVAAMVAWLLSRQ 232 (255)
T ss_pred CCcCHHHHHHHHHHHcCch
Confidence 3678999999998888653
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=172.56 Aligned_cols=213 Identities=15% Similarity=0.128 Sum_probs=153.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||.+++++|+++|++|++++|... +. ....... ....+.++.+|++|.+++.++++..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~-~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SE-TQQQVEA--LGRRFLSLTADLSDIEAIKALVDSAVEE 77 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HH-HHHHHHh--cCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998431 11 1111111 1236889999999999998877642
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.++.+++|+.++..+++++.. .+...++|++||...|.+.
T Consensus 78 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~---------- 147 (248)
T TIGR01832 78 FGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG---------- 147 (248)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC----------
Confidence 58999999997532 223345667899999999999988753 3323489999998877533
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.....|+.+|.+.+.+++.+++++ |+++++|+||.|..+..............+.+. .....+
T Consensus 148 --~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~------------~~~~~~ 213 (248)
T TIGR01832 148 --IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALRADEDRNAAILER------------IPAGRW 213 (248)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccccChHHHHHHHhc------------CCCCCC
Confidence 234579999999999999998875 899999999999887432110000111111111 112357
Q ss_pred eeHHHHHHHHHHHHhhcC
Q 011841 340 TYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~ 357 (476)
+.++|+|++++.++....
T Consensus 214 ~~~~dva~~~~~l~s~~~ 231 (248)
T TIGR01832 214 GTPDDIGGPAVFLASSAS 231 (248)
T ss_pred cCHHHHHHHHHHHcCccc
Confidence 899999999999986543
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=174.38 Aligned_cols=211 Identities=20% Similarity=0.206 Sum_probs=151.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++|+||||+|+||++++++|+++|++|++++|+.+ ......... ...+.++.+|++|.+++.++++.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~----~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPA----SLEAARAEL--GESALVIRADAGDVAAQKALAQALAEA 77 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHH----HHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999998532 111111111 236788999999998887766532
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCcc-ccCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSS-VYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~-vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... ....++++..+++|+.++.++++++... ....++|++||.. .|+.
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~------------- 144 (249)
T PRK06500 78 FGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGM------------- 144 (249)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCC-------------
Confidence 57999999997432 2344566789999999999999998742 1123777777744 4432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC----CCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR----PDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.....|+.+|.+.|.+++.++.++ |++++++|||.+++|... .......+.+.+..+.++.
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 212 (249)
T PRK06500 145 PNSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKLGLPEATLDAVAAQIQALVPLG------------ 212 (249)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhhccCccchHHHHHHHHhcCCCC------------
Confidence 345789999999999998887664 899999999999998421 1122233444444433321
Q ss_pred eceeHHHHHHHHHHHHhhcC
Q 011841 338 DFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~ 357 (476)
-+..++|+|++++.++....
T Consensus 213 ~~~~~~~va~~~~~l~~~~~ 232 (249)
T PRK06500 213 RFGTPEEIAKAVLYLASDES 232 (249)
T ss_pred CCcCHHHHHHHHHHHcCccc
Confidence 14578999999999886543
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=174.22 Aligned_cols=224 Identities=17% Similarity=0.142 Sum_probs=155.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
++++|||||+|+||.+++++|+++|+.|++..+.... .......... ....+.++.+|++|.+++.++++..
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRD---AAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDREL 78 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHH---HHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999887754321 1111111111 1235788999999999999888743
Q ss_pred -CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCccc-cCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV------NPQPSIVWASSSSV-YGLNTQVPFSE 259 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~------~~~~~~V~~SS~~v-yg~~~~~~~~E 259 (476)
++|+||||||.... +...++.+..+++|+.++.++++++.+. +..++||++||.+. ++..
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~------- 151 (248)
T PRK06123 79 GRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSP------- 151 (248)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCCC-------
Confidence 57999999997532 1233455678999999999998887542 11237999999764 3321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.....|+.+|.+.|.+++.++.++ |+++++||||.|+||...... .+.+...+....++.
T Consensus 152 -----~~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~~-~~~~~~~~~~~~p~~----------- 214 (248)
T PRK06123 152 -----GEYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASGG-EPGRVDRVKAGIPMG----------- 214 (248)
T ss_pred -----CCccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhccC-CHHHHHHHHhcCCCC-----------
Confidence 112459999999999999988765 899999999999998532211 122233333222221
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
-+.+++|++++++.++..... ..| ++|++.++
T Consensus 215 -~~~~~~d~a~~~~~l~~~~~~~~~g-----------~~~~~~gg 247 (248)
T PRK06123 215 -RGGTAEEVARAILWLLSDEASYTTG-----------TFIDVSGG 247 (248)
T ss_pred -CCcCHHHHHHHHHHHhCccccCccC-----------CEEeecCC
Confidence 124689999999998875432 222 88998765
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-20 Score=176.72 Aligned_cols=224 Identities=15% Similarity=0.119 Sum_probs=161.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++||||||+|+||.++++.|+++|++|++++|+.. ....... .....+..+.+|++|++++.++++..
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~-----~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 86 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED-----VAEVAAQ-LLGGNAKGLVCDVSDSQSVEAAVAAVISA 86 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHH-hhCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998542 1111111 22346778999999999998888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++.++++++.. .+. ++||++||.....+.
T Consensus 87 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~---------- 155 (255)
T PRK06841 87 FGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGG-GKIVNLASQAGVVAL---------- 155 (255)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCC-ceEEEEcchhhccCC----------
Confidence 67999999997432 123345567899999999999998754 343 489999997643211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.....|+.+|.+.+.+++.++.++ |++++.|+||.|..+....... ........+..+ ...+
T Consensus 156 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~~~------------~~~~ 220 (255)
T PRK06841 156 --ERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAWA-GEKGERAKKLIP------------AGRF 220 (255)
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCcccccccc-hhHHHHHHhcCC------------CCCC
Confidence 234679999999999999988764 8999999999998874331110 111111222211 2347
Q ss_pred eeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 TYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.+++|+|++++.++..+... +| +++.+.++..
T Consensus 221 ~~~~~va~~~~~l~~~~~~~~~G-----------~~i~~dgg~~ 253 (255)
T PRK06841 221 AYPEEIAAAALFLASDAAAMITG-----------ENLVIDGGYT 253 (255)
T ss_pred cCHHHHHHHHHHHcCccccCccC-----------CEEEECCCcc
Confidence 89999999999999765432 33 7888877653
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=177.19 Aligned_cols=166 Identities=17% Similarity=0.133 Sum_probs=128.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
.+++|+||||+|+||.+++++|+++|++|++++|+.+.. . .+...+++++.+|++|.++++++++.+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~----~-----~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 73 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDV----A-----ALEAEGLEAFQLDYAEPESIAALVAQVLELS 73 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----H-----HHHHCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 457999999999999999999999999999999954311 1 112236889999999999988877643
Q ss_pred --CccEEEEccccCChh----hhhcChHHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAG----FVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~g----t~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||..... .+.++.+..+++|+.| +..+++.+++.+.. +||++||...+..
T Consensus 74 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g-~iv~isS~~~~~~----------- 141 (277)
T PRK05993 74 GGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQG-RIVQCSSILGLVP----------- 141 (277)
T ss_pred CCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCC-EEEEECChhhcCC-----------
Confidence 579999999874332 2234456789999999 55666667777765 9999999765422
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPW 304 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~ 304 (476)
..+...|+.+|.+.|.+++.++.+ +|+++++|+||.|-.+.
T Consensus 142 -~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~ 185 (277)
T PRK05993 142 -MKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRF 185 (277)
T ss_pred -CCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCch
Confidence 145678999999999999887644 58999999999998763
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=173.69 Aligned_cols=210 Identities=18% Similarity=0.196 Sum_probs=156.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc----
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV---- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---- 191 (476)
..+++++|||||++||..+++.|+++|++|+++.|+.+.+.+..++..... .-.++++.+||+|++++.++++.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~--~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT--GVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh--CceEEEEECcCCChhHHHHHHHHHHhc
Confidence 567899999999999999999999999999999997765544433333322 33688999999999998887753
Q ss_pred -CCccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 192 -VPFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 192 -~~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
.++|++|||||.... +.+++..++++++|+.++..|..+ +.+.+.. +||+++|.+.|-+.
T Consensus 82 ~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G-~IiNI~S~ag~~p~---------- 150 (265)
T COG0300 82 GGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAG-HIINIGSAAGLIPT---------- 150 (265)
T ss_pred CCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEechhhcCCC----------
Confidence 368999999998543 334455567999999997766655 4455554 99999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
+-.+.|++||...-.+.+.+..+ +|+.++.|+||.+..+.... ++..... .....-+
T Consensus 151 --p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~~~------------~~~~~~~------~~~~~~~ 210 (265)
T COG0300 151 --PYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFFDA------------KGSDVYL------LSPGELV 210 (265)
T ss_pred --cchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccccc------------ccccccc------ccchhhc
Confidence 44678999999988777776655 48999999999998773221 1111111 1123457
Q ss_pred eeHHHHHHHHHHHHhhcCc
Q 011841 340 TYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~ 358 (476)
+..+|+|+..+..+++.+.
T Consensus 211 ~~~~~va~~~~~~l~~~k~ 229 (265)
T COG0300 211 LSPEDVAEAALKALEKGKR 229 (265)
T ss_pred cCHHHHHHHHHHHHhcCCc
Confidence 8899999999999988653
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=174.87 Aligned_cols=235 Identities=15% Similarity=0.103 Sum_probs=158.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+|+||||+|+||.++++.|+++|++|+++++......+..+....... ....++++.+|++|.+++.++++.+
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999988887654433332222222221 1236888999999999999888753
Q ss_pred ---CccEEEEccccCC----hhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAG----VRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~----~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||... ...+.++.+..+++|+.++..+++++...- ..+++++++|+.+....
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~------------ 153 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFT------------ 153 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccC------------
Confidence 6899999999743 233445677889999999999999876432 12367766433222111
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
+....|+.+|.+.|.+++.+++++ |+++++++||.+.++...+..... ... ...... . ........+.+
T Consensus 154 ~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~-~~~--~~~~~~--~---~~~~~~~~~~~ 225 (257)
T PRK12744 154 PFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQEGAE-AVA--YHKTAA--A---LSPFSKTGLTD 225 (257)
T ss_pred CCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhccccccc-hhh--cccccc--c---ccccccCCCCC
Confidence 234679999999999999998875 699999999999877432111100 000 000000 0 00111225789
Q ss_pred HHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 342 IDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
++|+|+++..++.......| +++++.++.
T Consensus 226 ~~dva~~~~~l~~~~~~~~g-----------~~~~~~gg~ 254 (257)
T PRK12744 226 IEDIVPFIRFLVTDGWWITG-----------QTILINGGY 254 (257)
T ss_pred HHHHHHHHHHhhcccceeec-----------ceEeecCCc
Confidence 99999999999985322223 888888764
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-20 Score=178.71 Aligned_cols=211 Identities=17% Similarity=0.145 Sum_probs=151.0
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
++++|+||||+|+||++++++|+++|++|++++|+..... ...+++++++|++|+++++++++.+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-----------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 71 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAA-----------PIPGVELLELDVTDDASVQAAVDEVIARA 71 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-----------ccCCCeeEEeecCCHHHHHHHHHHHHHhC
Confidence 5678999999999999999999999999999999543211 1247889999999999999988764
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ....++.+..+++|+.++.++++++ ++.+.+ +||++||...+...
T Consensus 72 g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~~----------- 139 (270)
T PRK06179 72 GRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSG-RIINISSVLGFLPA----------- 139 (270)
T ss_pred CCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEECCccccCCC-----------
Confidence 57999999997433 2233456788999999999888874 556654 99999997755321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC----cHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM----AYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.....|+.+|.+.|.+++.++.+ +|+++++++||.+.++...... ....+ .... ....... ....
T Consensus 140 -~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~~-~~~~-~~~~~~~-----~~~~ 211 (270)
T PRK06179 140 -PYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFDANAPEPDSPLAEY-DRER-AVVSKAV-----AKAV 211 (270)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccccccCCCCCcchhh-HHHH-HHHHHHH-----Hhcc
Confidence 34568999999999998888755 5899999999999887432110 00000 0000 0000000 0011
Q ss_pred EeceeHHHHHHHHHHHHhhcCc
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
.....++|+|+.++.++..+..
T Consensus 212 ~~~~~~~~va~~~~~~~~~~~~ 233 (270)
T PRK06179 212 KKADAPEVVADTVVKAALGPWP 233 (270)
T ss_pred ccCCCHHHHHHHHHHHHcCCCC
Confidence 1246679999999999987653
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=174.36 Aligned_cols=227 Identities=16% Similarity=0.126 Sum_probs=161.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+++||||||+|+||.++++.|+++|++|++++|+.+..+ ....... ....+.++.+|++|++++.++++..
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~----~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~ 85 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELE----EAAAHLEALGIDALWIAADVADEADIERLAEETLE 85 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH----HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998543211 1111111 1236788999999999997777642
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc-----CCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV-----NPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~-----~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... +...+..+..++.|+.++.++++++... +. ++||++||...+.....
T Consensus 86 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~-~~~v~~sS~~~~~~~~~------ 158 (259)
T PRK08213 86 RFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGY-GRIINVASVAGLGGNPP------ 158 (259)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCC-eEEEEECChhhccCCCc------
Confidence 67999999997432 2233455678899999999999987654 43 38999999765543211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
...+...|+.+|++.|.+++.+++++ |+++++++||.+-++.... .+..+.+.+..+.++..
T Consensus 159 --~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~~--~~~~~~~~~~~~~~~~~----------- 223 (259)
T PRK08213 159 --EVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTRG--TLERLGEDLLAHTPLGR----------- 223 (259)
T ss_pred --cccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchhh--hhHHHHHHHHhcCCCCC-----------
Confidence 01345789999999999999988764 7999999999987764321 23344444444443322
Q ss_pred eceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~ 380 (476)
+...+|+++++..++...... .| .++++.++
T Consensus 224 -~~~~~~va~~~~~l~~~~~~~~~G-----------~~~~~~~~ 255 (259)
T PRK08213 224 -LGDDEDLKGAALLLASDASKHITG-----------QILAVDGG 255 (259)
T ss_pred -CcCHHHHHHHHHHHhCccccCccC-----------CEEEECCC
Confidence 345799999988888654322 22 77877765
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=175.45 Aligned_cols=208 Identities=17% Similarity=0.118 Sum_probs=150.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
+++||||||+|+||.++++.|+++|++|++++|+....+ ....... ...++.++.+|+.|.+++.++++.+
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~----~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 76 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLA----SLAQELADHGGEALVVPTDVSDAEACERLIEAAVARF 76 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 368999999999999999999999999999998543221 1111111 1346889999999999998888754
Q ss_pred -CccEEEEccccCChhh-----hhcChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGVRY-----AMQNPQSYVASNIAGFVNLLEVCKS---VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a~~---~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||...... ..+.....+++|+.++.++++.+.. .+. .++|++||...+.+.
T Consensus 77 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~iv~~sS~~~~~~~----------- 144 (263)
T PRK06181 77 GGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASR-GQIVVVSSLAGLTGV----------- 144 (263)
T ss_pred CCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CEEEEEecccccCCC-----------
Confidence 6799999998744321 2233556799999999999998753 222 489999998776432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.+...|+.+|.+.|.+++.+..+ .++++++++||.+..+.... ... ..+.+.... +....+++
T Consensus 145 -~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~------~~~--~~~~~~~~~-----~~~~~~~~ 210 (263)
T PRK06181 145 -PTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKR------ALD--GDGKPLGKS-----PMQESKIM 210 (263)
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchh------hcc--ccccccccc-----cccccCCC
Confidence 34578999999999998887654 48999999999998763221 000 012211111 22234789
Q ss_pred eHHHHHHHHHHHHhh
Q 011841 341 YIDDVVKGCVGALDT 355 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~ 355 (476)
+++|+|++++.+++.
T Consensus 211 ~~~dva~~i~~~~~~ 225 (263)
T PRK06181 211 SAEECAEAILPAIAR 225 (263)
T ss_pred CHHHHHHHHHHHhhC
Confidence 999999999999975
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-19 Score=170.58 Aligned_cols=226 Identities=18% Similarity=0.131 Sum_probs=161.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+|+|+||||+|+||.++++.|+++|++|++++|..+......+... ....++.++.+|++|.+++.++++.+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALE---AAGGRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999885432222111111 11246899999999999999888652
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+|||++|.... ....+..+..++.|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 150 (250)
T PRK12939 82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGR-GRIVNLASDTALWGA---------- 150 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-eEEEEECchhhccCC----------
Confidence 67999999997442 223344566788999999999988753 223 389999997754322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.....|+.+|.+.|.+++.++.+ .++++++|+||.+.++....-.. ..+....... .....+
T Consensus 151 --~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~~~-~~~~~~~~~~------------~~~~~~ 215 (250)
T PRK12939 151 --PKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYVPA-DERHAYYLKG------------RALERL 215 (250)
T ss_pred --CCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCccccccCC-hHHHHHHHhc------------CCCCCC
Confidence 33467999999999999988765 47999999999998875322111 1222222222 122347
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
++++|+|++++.++..... ..| +++++.++.
T Consensus 216 ~~~~dva~~~~~l~~~~~~~~~G-----------~~i~~~gg~ 247 (250)
T PRK12939 216 QVPDDVAGAVLFLLSDAARFVTG-----------QLLPVNGGF 247 (250)
T ss_pred CCHHHHHHHHHHHhCccccCccC-----------cEEEECCCc
Confidence 8999999999999976532 222 888888764
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-19 Score=172.75 Aligned_cols=223 Identities=13% Similarity=0.081 Sum_probs=160.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+|+++||||+|+||++++++|+++|++|++++|+.+. .....+++++.+|+.|.+++.++++.+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-----------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 72 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-----------TVDGRPAEFHAADVRDPDQVAALVDAIVER 72 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-----------hhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999985431 112347889999999999998888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +...++.+..+++|+.++..+++++.. .+...+||++||...+.+.
T Consensus 73 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~---------- 142 (252)
T PRK07856 73 HGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPS---------- 142 (252)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCC----------
Confidence 68999999996432 223345567899999999999998754 2222489999998754322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.....|+.+|.+.|.+++.++.+++ +++++++||.|.++.......-......+....+. ..+.
T Consensus 143 --~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 208 (252)
T PRK07856 143 --PGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVPL------------GRLA 208 (252)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhccCHHHHHHHhhcCCC------------CCCc
Confidence 3457899999999999999988753 89999999999877422110001111122222111 2356
Q ss_pred eHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 341 YIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
.++|+|++++.++.... ..+| .++.+.++...+
T Consensus 209 ~p~~va~~~~~L~~~~~~~i~G-----------~~i~vdgg~~~~ 242 (252)
T PRK07856 209 TPADIAWACLFLASDLASYVSG-----------ANLEVHGGGERP 242 (252)
T ss_pred CHHHHHHHHHHHcCcccCCccC-----------CEEEECCCcchH
Confidence 78999999999886543 2333 788888775433
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-19 Score=172.72 Aligned_cols=228 Identities=14% Similarity=0.139 Sum_probs=162.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+|++|||||+|+||.++++.|+++|++|++++|+.+.......+... .....++.++.+|++|.+++.++++.+
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAE-EFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-hCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999964322111111111 112347889999999999988877643
Q ss_pred --CccEEEEccccCC----hhhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAG----VRYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~----~~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+|||+||... .....++.+..+++|+.++..+++++. +.+. ++||++||...+.+.
T Consensus 86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~sS~~~~~~~---------- 154 (257)
T PRK09242 86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHAS-SAIVNIGSVSGLTHV---------- 154 (257)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-ceEEEECccccCCCC----------
Confidence 5799999999732 133456677889999999999988874 3343 489999998765432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.++ |++++.++||.+.++..........+...+....++. -+
T Consensus 155 --~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~------------~~ 220 (257)
T PRK09242 155 --RSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPMR------------RV 220 (257)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCCC------------CC
Confidence 345679999999999999887654 8999999999999885432211123333333332221 13
Q ss_pred eeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCC
Q 011841 340 TYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~ 380 (476)
...+|++.++..++...... .| +++.+.++
T Consensus 221 ~~~~~va~~~~~l~~~~~~~~~g-----------~~i~~~gg 251 (257)
T PRK09242 221 GEPEEVAAAVAFLCMPAASYITG-----------QCIAVDGG 251 (257)
T ss_pred cCHHHHHHHHHHHhCcccccccC-----------CEEEECCC
Confidence 45799999999988654321 22 77777654
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-19 Score=170.36 Aligned_cols=224 Identities=16% Similarity=0.133 Sum_probs=157.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++++||||||+|+||.++++.|+++|++|+++.|+..... ....... .....+.++.+|++|.+++.++++..
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGA---EALVAEIGALGGKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHH---HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999988888543211 1111111 12347888999999999988887743
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCcc-ccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSS-VYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~-vyg~~~~~~~~E~ 260 (476)
++|+|||+||.... ....+.++..+..|+.++.++++++... +. ++||++||.. +++.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~iss~~~~~~~--------- 149 (248)
T PRK05557 80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRS-GRIINISSVVGLMGN--------- 149 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-eEEEEEcccccCcCC---------
Confidence 57999999997443 2233455677889999999999887643 33 3899999964 3332
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.....|+.+|.+.+.+++.++++ .++++++++||.+.++.... ....+........+. .
T Consensus 150 ----~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~--~~~~~~~~~~~~~~~------------~ 211 (248)
T PRK05557 150 ----PGQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDA--LPEDVKEAILAQIPL------------G 211 (248)
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccc--cChHHHHHHHhcCCC------------C
Confidence 23567999999999888887654 37999999999987653221 112233333322211 2
Q ss_pred eceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+.+++|+++++..++..... ..| ++|++.++.
T Consensus 212 ~~~~~~~va~~~~~l~~~~~~~~~g-----------~~~~i~~~~ 245 (248)
T PRK05557 212 RLGQPEEIASAVAFLASDEAAYITG-----------QTLHVNGGM 245 (248)
T ss_pred CCcCHHHHHHHHHHHcCcccCCccc-----------cEEEecCCc
Confidence 367899999999888765222 122 899998763
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=172.69 Aligned_cols=218 Identities=18% Similarity=0.122 Sum_probs=158.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+|++|||||+|+||+.++++|+++|++|++++|+. . ......+.++++|++|.+++.++++..
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------L---TQEDYPFATFVLDVSDAAAVAQVCQRLLAE 73 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------h---hhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999843 0 111346889999999999999888753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.+++...+++|+.++..+++++.. .+. ++||++||.....+.
T Consensus 74 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~~ss~~~~~~~---------- 142 (252)
T PRK08220 74 TGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRS-GAIVTVGSNAAHVPR---------- 142 (252)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CEEEEECCchhccCC----------
Confidence 57999999997543 223456678899999999999988743 333 389999997653211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcH--------HHHHHHHHcCCceEEEeeCC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAY--------FFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~--------~~~~~~~~~g~~~~~~~~~~ 331 (476)
.+...|+.+|.+.+.+++.+..+ +|+++++++||.++++........ .........
T Consensus 143 --~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 209 (252)
T PRK08220 143 --IGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLWVDEDGEQQVIAGFPEQFKL----------- 209 (252)
T ss_pred --CCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhccchhhhhhhhhhHHHHHhh-----------
Confidence 35578999999999999988876 689999999999999843210000 000011111
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
......+++++|+|++++.++.... ...| +++.+.++.
T Consensus 210 -~~~~~~~~~~~dva~~~~~l~~~~~~~~~g-----------~~i~~~gg~ 248 (252)
T PRK08220 210 -GIPLGKIARPQEIANAVLFLASDLASHITL-----------QDIVVDGGA 248 (252)
T ss_pred -cCCCcccCCHHHHHHHHHHHhcchhcCccC-----------cEEEECCCe
Confidence 1122357999999999999886542 2222 677676653
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=174.34 Aligned_cols=224 Identities=16% Similarity=0.068 Sum_probs=149.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc----
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV---- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---- 191 (476)
..+++|+||||+|+||.+++++|+++|++|++++|+.+.. ...... -.++.++.+|++|.++++++++.
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~----~~~~~~---l~~v~~~~~Dl~d~~~v~~~~~~~~~~ 96 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVA----REALAG---IDGVEVVMLDLADLESVRAFAERFLDS 96 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHH---hhhCeEEEccCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999999954311 111111 12488999999999999888764
Q ss_pred -CCccEEEEccccCCh--hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCC--CC
Q 011841 192 -VPFTHVLHLAAQAGV--RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSES--HR 262 (476)
Q Consensus 192 -~~~d~Vi~~Ag~~~~--~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~--~~ 262 (476)
.++|+||||||.... ....++.+..+++|+.++..+++. +++.+. .+||++||.+..... ..+.+. ..
T Consensus 97 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~-~~iV~vSS~~~~~~~--~~~~~~~~~~ 173 (315)
T PRK06196 97 GRRIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAG-ARVVALSSAGHRRSP--IRWDDPHFTR 173 (315)
T ss_pred CCCCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEECCHHhccCC--CCccccCccC
Confidence 257999999997533 223345678899999997666664 444544 399999997643211 011111 11
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
...+...|+.+|.+.+.+++.+.++ .|+++++|+||.|.++......................+. ..+
T Consensus 174 ~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 244 (315)
T PRK06196 174 GYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQRHLPREEQVALGWVDEHGNPID---------PGF 244 (315)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCccccCChhhhhhhhhhhhhhhhhh---------hhc
Confidence 2245578999999999999888765 4799999999999998543211100000000000000000 024
Q ss_pred eeHHHHHHHHHHHHhhcCc
Q 011841 340 TYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~ 358 (476)
..++|+|..++.++..+..
T Consensus 245 ~~~~~~a~~~~~l~~~~~~ 263 (315)
T PRK06196 245 KTPAQGAATQVWAATSPQL 263 (315)
T ss_pred CCHhHHHHHHHHHhcCCcc
Confidence 5689999999999876543
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=171.71 Aligned_cols=228 Identities=14% Similarity=0.122 Sum_probs=157.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++++||||+|+||.++++.|+++|++|++++|..+..+....+.. ....++.++.+|++|+++++++++.+
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIR---AEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999999999999996542222111111 11236888999999999988888743
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ....++.+..+++|+.++..+++++ ++.+.. +||++||...+...
T Consensus 81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~-~iv~~sS~~~~~~~--------- 150 (254)
T PRK07478 81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGG-SLIFTSTFVGHTAG--------- 150 (254)
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEEechHhhccC---------
Confidence 68999999997431 2234556788999999887776654 444443 89999997755311
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|-.+..............+....+ ...
T Consensus 151 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 216 (254)
T PRK07478 151 --FPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLHA------------LKR 216 (254)
T ss_pred --CCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcCC------------CCC
Confidence 1345789999999999999988775 69999999999987732211001111111111111 123
Q ss_pred ceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 339 FTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+..++|+|++++.++..+.. .+| +++.+.++.
T Consensus 217 ~~~~~~va~~~~~l~s~~~~~~~G-----------~~~~~dgg~ 249 (254)
T PRK07478 217 MAQPEEIAQAALFLASDAASFVTG-----------TALLVDGGV 249 (254)
T ss_pred CcCHHHHHHHHHHHcCchhcCCCC-----------CeEEeCCch
Confidence 56789999999998865432 232 777776653
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.6e-19 Score=172.12 Aligned_cols=212 Identities=14% Similarity=0.069 Sum_probs=151.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..++++|||||+|+||.+++++|+++|++|++++|+.+.... ...... ...++..+.+|++|.+++.++++..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~----~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAEL----AVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEK 82 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHH----HHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999986432211 111111 1236788899999999998887653
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... +...++.+..+++|+.++..+++++.. .+. .+||++||.....+
T Consensus 83 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~---------- 151 (254)
T PRK08085 83 DIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQA-GKIINICSMQSELG---------- 151 (254)
T ss_pred hcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEccchhccC----------
Confidence 57999999997432 233455667899999999988887654 333 48999999754211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
..+...|+.+|.+.+.+++.++.++ |+++++|+||++.++..........+...+....++ ..
T Consensus 152 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~p~------------~~ 217 (254)
T PRK08085 152 --RDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPA------------AR 217 (254)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcCCC------------CC
Confidence 1345689999999999999988764 899999999999988433211111122222222221 23
Q ss_pred ceeHHHHHHHHHHHHhhc
Q 011841 339 FTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~ 356 (476)
+...+|++.+++.++...
T Consensus 218 ~~~~~~va~~~~~l~~~~ 235 (254)
T PRK08085 218 WGDPQELIGAAVFLSSKA 235 (254)
T ss_pred CcCHHHHHHHHHHHhCcc
Confidence 677899999998888753
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-19 Score=171.42 Aligned_cols=227 Identities=15% Similarity=0.172 Sum_probs=161.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+++||||||+|+||.+++++|+++|++|++++|..+..+. ...... ...++.++.+|++|.+++.++++..
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~----~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 84 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANH----VVDEIQQLGGQAFACRCDITSEQELSALADFALS 84 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH----HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999985432211 111111 1236888999999999988877643
Q ss_pred ---CccEEEEccccCCh---hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~---~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +...++.+..+++|+.++.++++++. +.+. .+||++||.+...+.
T Consensus 85 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~---------- 153 (255)
T PRK06113 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG-GVILTITSMAAENKN---------- 153 (255)
T ss_pred HcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCC-cEEEEEecccccCCC----------
Confidence 67999999997432 22335566779999999999999875 3333 389999997643211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++++||.+..+.... ...+.+.....+..+. ..+
T Consensus 154 --~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~-~~~~~~~~~~~~~~~~------------~~~ 218 (255)
T PRK06113 154 --INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS-VITPEIEQKMLQHTPI------------RRL 218 (255)
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccc-ccCHHHHHHHHhcCCC------------CCC
Confidence 34567999999999999998765 37999999999998764321 1112233333322221 225
Q ss_pred eeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCcc
Q 011841 340 TYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..++|++++++.++...... +| +++++.++...
T Consensus 219 ~~~~d~a~~~~~l~~~~~~~~~G-----------~~i~~~gg~~~ 252 (255)
T PRK06113 219 GQPQDIANAALFLCSPAASWVSG-----------QILTVSGGGVQ 252 (255)
T ss_pred cCHHHHHHHHHHHcCccccCccC-----------CEEEECCCccc
Confidence 68899999999998654321 22 88999887543
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7e-19 Score=170.61 Aligned_cols=222 Identities=16% Similarity=0.057 Sum_probs=158.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+|+||||||+|+||++++++|+++|++|++++|.... ....++.++.+|+.|.+++.++++..
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~------------~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD------------DLPEGVEFVAADLTTAEGCAAVARAVLER 74 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh------------hcCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999985421 01236889999999999888776543
Q ss_pred --CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ....++.+..+++|+.++..+++++ ++.+. .+||++||...+...
T Consensus 75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~ii~isS~~~~~~~-------- 145 (260)
T PRK06523 75 LGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGS-GVIIHVTSIQRRLPL-------- 145 (260)
T ss_pred cCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-cEEEEEecccccCCC--------
Confidence 57999999996321 1334566778999999998886654 34444 389999998765321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC---------CcHHHHHHHHH---cCCceE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD---------MAYFFFTKDIL---QGKTID 325 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~---------~~~~~~~~~~~---~g~~~~ 325 (476)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .........+. .+.+
T Consensus 146 ---~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-- 220 (260)
T PRK06523 146 ---PESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALAERLAEAAGTDYEGAKQIIMDSLGGIP-- 220 (260)
T ss_pred ---CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHHHHHHhhcCCCHHHHHHHHHHHhccCc--
Confidence 1245789999999999999988664 79999999999998743210 00011111111 1111
Q ss_pred EEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 326 VYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
...+..++|+|++++.++.... ..+| +++.+.++...|
T Consensus 221 ----------~~~~~~~~~va~~~~~l~s~~~~~~~G-----------~~~~vdgg~~~~ 259 (260)
T PRK06523 221 ----------LGRPAEPEEVAELIAFLASDRAASITG-----------TEYVIDGGTVPT 259 (260)
T ss_pred ----------cCCCCCHHHHHHHHHHHhCcccccccC-----------ceEEecCCccCC
Confidence 1235578999999999987542 2233 788888876544
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.3e-19 Score=169.75 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=159.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..++++|||||+|+||..+++.|+++|+.|++++|..+.......... .....+..+.+|++|.++++++++..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECG---ALGTEVRGYAANVTDEEDVEATFAQIAED 79 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999985432211111111 11346788999999999888777653
Q ss_pred --CccEEEEccccCCh-------------hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCC
Q 011841 193 --PFTHVLHLAAQAGV-------------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNT 253 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-------------~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~ 253 (476)
++|+||||||.... +.+.++....+++|+.++..+++.+. +......||++||...|+.
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~-- 157 (253)
T PRK08217 80 FGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN-- 157 (253)
T ss_pred cCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC--
Confidence 57999999996331 22334556688899999987776543 2222237999999877643
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeC
Q 011841 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (476)
.+...|+.+|.+.|.+++.++++ .+++++.++||.+.++.... ..+.+...+....+.
T Consensus 158 -----------~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~~~~--~~~~~~~~~~~~~~~------ 218 (253)
T PRK08217 158 -----------MGQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEMTAA--MKPEALERLEKMIPV------ 218 (253)
T ss_pred -----------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccccc--cCHHHHHHHHhcCCc------
Confidence 24577999999999999988765 48999999999999875432 113333333333222
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+.+++|+|+++..++.... ..| ++|++.++.
T Consensus 219 ------~~~~~~~~~a~~~~~l~~~~~-~~g-----------~~~~~~gg~ 251 (253)
T PRK08217 219 ------GRLGEPEEIAHTVRFIIENDY-VTG-----------RVLEIDGGL 251 (253)
T ss_pred ------CCCcCHHHHHHHHHHHHcCCC-cCC-----------cEEEeCCCc
Confidence 235688999999999986432 233 899998864
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.8e-19 Score=170.50 Aligned_cols=226 Identities=16% Similarity=0.086 Sum_probs=158.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..++++|||||+|+||+++++.|+++|++|++++|..+.. +..... .....++.++.+|++|.+++.++++..
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEEL---RALQPRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHH---HhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999865432 111111 112346889999999999998888753
Q ss_pred --CccEEEEccccCCh---hhhhcChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCKS---VNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~---~~~~~~~~~~~~~nv~gt~~ll~~a~~---~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... ....++.+..+++|+.++..+++.+.. .+. ++||++||...+.+.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~iv~~ss~~~~~~~------------ 147 (258)
T PRK08628 81 FGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASR-GAIVNISSKTALTGQ------------ 147 (258)
T ss_pred cCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccC-cEEEEECCHHhccCC------------
Confidence 67999999996322 222245667899999999999888753 222 489999997654221
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.|.+++.++.+ .+++++.|+||.|+++..... .........+.+..+. + .
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~ 216 (258)
T PRK08628 148 GGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENWIATFDDPEAKLAAITAKIPL--------G---H 216 (258)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHHhhhccCHHHHHHHHHhcCCc--------c---c
Confidence 34578999999999999998765 489999999999999842210 0000111111111110 1 1
Q ss_pred eceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~ 380 (476)
.++.++|+|++++.++...... +| +.+.+.++
T Consensus 217 ~~~~~~dva~~~~~l~~~~~~~~~g-----------~~~~~~gg 249 (258)
T PRK08628 217 RMTTAEEIADTAVFLLSERSSHTTG-----------QWLFVDGG 249 (258)
T ss_pred cCCCHHHHHHHHHHHhChhhccccC-----------ceEEecCC
Confidence 3678899999999999765322 22 67777654
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=167.35 Aligned_cols=224 Identities=16% Similarity=0.106 Sum_probs=159.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC-----
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~----- 192 (476)
++||||||+|+||+++++.|+++|++|++++|+.. +..+...... ....++.++.+|++|.+++.++++.+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 79 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGN---DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG 79 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcH---HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999998643 1111111111 12346889999999999988887653
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+|||++|.... ....++.+..++.|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 80 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~iss~~~~~~~------------ 146 (245)
T PRK12824 80 PVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYG-RIINISSVNGLKGQ------------ 146 (245)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCe-EEEEECChhhccCC------------
Confidence 57999999997432 2334566778999999988886544 555544 99999998766432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.....|+.+|.+.+.+++.++.+ .|+++++++||.+.++...... ..+...+....++ ..+..
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~--~~~~~~~~~~~~~------------~~~~~ 212 (245)
T PRK12824 147 FGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQMG--PEVLQSIVNQIPM------------KRLGT 212 (245)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhcC--HHHHHHHHhcCCC------------CCCCC
Confidence 34467999999999998888754 3899999999999987433211 1222222322222 23556
Q ss_pred HHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 342 IDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
++|+++++..++..... ..| +++++.++..+
T Consensus 213 ~~~va~~~~~l~~~~~~~~~G-----------~~~~~~~g~~~ 244 (245)
T PRK12824 213 PEEIAAAVAFLVSEAAGFITG-----------ETISINGGLYM 244 (245)
T ss_pred HHHHHHHHHHHcCccccCccC-----------cEEEECCCeec
Confidence 89999999888854322 222 89999887643
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.8e-19 Score=169.39 Aligned_cols=226 Identities=16% Similarity=0.123 Sum_probs=159.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++++|+||||+|+||+++++.|+++|++|+++.|+.... ......... ...++.++.+|++|.+++.++++.+
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAA---ADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHH---HHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4668999999999999999999999999999888754321 111111111 2346889999999999999888753
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... ....++.+..+++|+.++.++++++.+.. ..++||++||...+...
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~------------ 147 (245)
T PRK12937 80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPL------------ 147 (245)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCC------------
Confidence 67999999997432 22334566788999999999998876532 22489999987654221
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
++...|+.+|.+.+.+++.++.++ |+++++++||.+-++..... ........+.+..+.. .+.+
T Consensus 148 ~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~-~~~~~~~~~~~~~~~~------------~~~~ 214 (245)
T PRK12937 148 PGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG-KSAEQIDQLAGLAPLE------------RLGT 214 (245)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc-CCHHHHHHHHhcCCCC------------CCCC
Confidence 456789999999999999887664 79999999999887642111 1122333333332221 2457
Q ss_pred HHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCC
Q 011841 342 IDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~ 380 (476)
++|++++++.++..+... .| +++++.++
T Consensus 215 ~~d~a~~~~~l~~~~~~~~~g-----------~~~~~~~g 243 (245)
T PRK12937 215 PEEIAAAVAFLAGPDGAWVNG-----------QVLRVNGG 243 (245)
T ss_pred HHHHHHHHHHHcCccccCccc-----------cEEEeCCC
Confidence 899999999888664432 22 78888764
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=168.93 Aligned_cols=227 Identities=17% Similarity=0.139 Sum_probs=158.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..++++|||||+|+||++++++|+++|++|++++|+.+.. ......... ...++..+.+|++|++++.++++.+
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~---~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 82 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDG---LAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA 82 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchH---HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999865321 111111111 1336888999999999988887653
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... +...++.+..+++|+.++..+++++. +.+. ++||++||.+.+.....
T Consensus 83 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~~~------- 154 (254)
T PRK06114 83 ELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGG-GSIVNIASMSGIIVNRG------- 154 (254)
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-cEEEEECchhhcCCCCC-------
Confidence 57999999997432 23345667789999999988877653 3333 48999999774422211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.+.++....... ......+.+..++ ..
T Consensus 155 ---~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~~~-~~~~~~~~~~~p~------------~r 218 (254)
T PRK06114 155 ---LLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRPEM-VHQTKLFEEQTPM------------QR 218 (254)
T ss_pred ---CCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccccc-hHHHHHHHhcCCC------------CC
Confidence 124679999999999999988654 7999999999998885331111 1111222222221 12
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
+..++|++++++.++.... ..+| +++.+.++
T Consensus 219 ~~~~~dva~~~~~l~s~~~~~~tG-----------~~i~~dgg 250 (254)
T PRK06114 219 MAKVDEMVGPAVFLLSDAASFCTG-----------VDLLVDGG 250 (254)
T ss_pred CcCHHHHHHHHHHHcCccccCcCC-----------ceEEECcC
Confidence 5678999999999886532 2233 77777765
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=166.55 Aligned_cols=200 Identities=17% Similarity=0.122 Sum_probs=142.8
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-CccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~d~ 196 (476)
+|+||||||+|+||+++++.|+++ ++|++++|+... ...... ...+++++.+|+.|.+++.++++.. ++|+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~----~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~id~ 74 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAER----LDELAA---ELPGATPFPVDLTDPEAIAAAVEQLGRLDV 74 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHH----HHHHHH---HhccceEEecCCCCHHHHHHHHHhcCCCCE
Confidence 478999999999999999999999 999999995321 111111 1236889999999999999998864 5799
Q ss_pred EEEccccCChh----hhhcChHHHHHHHHHHHHHHH----HHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCC
Q 011841 197 VLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLL----EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (476)
Q Consensus 197 Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll----~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (476)
|||++|..... ...++....++.|+.+...+. +.+++.+ .++|++||...++.. .+..
T Consensus 75 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~v~~ss~~~~~~~------------~~~~ 140 (227)
T PRK08219 75 LVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH--GHVVFINSGAGLRAN------------PGWG 140 (227)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CeEEEEcchHhcCcC------------CCCc
Confidence 99999975431 122344567888888855444 4444443 389999998766432 3456
Q ss_pred hHHHHHHHHHHHHHHHHHHh-C-CcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHH
Q 011841 269 LYAATKKAGEEIAHTYNHIY-G-LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346 (476)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~-g-i~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (476)
.|+.+|.+.|.+++.++.+. + ++++.++||.+.++... .+.. ..+. ......+++++|++
T Consensus 141 ~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~------~~~~--~~~~----------~~~~~~~~~~~dva 202 (227)
T PRK08219 141 SYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQR------GLVA--QEGG----------EYDPERYLRPETVA 202 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhh------hhhh--hhcc----------ccCCCCCCCHHHHH
Confidence 89999999999988876543 4 89999999987765211 1111 0011 11124589999999
Q ss_pred HHHHHHHhhcC
Q 011841 347 KGCVGALDTAG 357 (476)
Q Consensus 347 ~a~~~~l~~~~ 357 (476)
++++.+++++.
T Consensus 203 ~~~~~~l~~~~ 213 (227)
T PRK08219 203 KAVRFAVDAPP 213 (227)
T ss_pred HHHHHHHcCCC
Confidence 99999998754
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.3e-19 Score=169.71 Aligned_cols=213 Identities=13% Similarity=0.052 Sum_probs=154.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+|+||||+|+||+++++.|+++|++|++++|+.+.. ........ ...++.++.+|++|++++.++++.+
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATL----EAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHH----HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999964322 11111111 1336889999999999988887643
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||+|.... +...++.+..+++|+.++..+++.+.+ .+. ++||++||...+.+.
T Consensus 85 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~ss~~~~~~~--------- 154 (256)
T PRK06124 85 EHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGY-GRIIAITSIAGQVAR--------- 154 (256)
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEeechhccCC---------
Confidence 57999999997432 233455667899999999999976643 444 389999997654221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.....|+.+|.+.+.+++.++.+. |+++++|+||.+.++.......-..+...+....+ ...
T Consensus 155 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 219 (256)
T PRK06124 155 ---AGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRTP------------LGR 219 (256)
T ss_pred ---CCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcCC------------CCC
Confidence 234689999999999999887664 79999999999999853211111122222222211 123
Q ss_pred ceeHHHHHHHHHHHHhhcC
Q 011841 339 FTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~ 357 (476)
+++++|++++++.++..+.
T Consensus 220 ~~~~~~~a~~~~~l~~~~~ 238 (256)
T PRK06124 220 WGRPEEIAGAAVFLASPAA 238 (256)
T ss_pred CCCHHHHHHHHHHHcCccc
Confidence 7889999999999997754
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.5e-19 Score=169.70 Aligned_cols=227 Identities=14% Similarity=0.077 Sum_probs=153.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhcc---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDV--- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~--- 191 (476)
.++|+++||||+|+||.+++++|+++|++|++..+.... ......... .....+..+.+|+.|.+++..+++.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKE---EAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDN 78 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHH---HHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999987542211 111111111 1133577889999998877665542
Q ss_pred --------CCccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCC
Q 011841 192 --------VPFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 192 --------~~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
.++|+||||||.... +...+..+..+++|+.++..+++++.... ...+||++||.+.+...
T Consensus 79 ~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------ 152 (252)
T PRK12747 79 ELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL------ 152 (252)
T ss_pred HhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCC------
Confidence 158999999997432 12233456788999999999998775432 12489999998765322
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++....... ........+. ...
T Consensus 153 ------~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~-~~~~~~~~~~-----------~~~ 214 (252)
T PRK12747 153 ------PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELLS-DPMMKQYATT-----------ISA 214 (252)
T ss_pred ------CCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhccc-CHHHHHHHHh-----------cCc
Confidence 345679999999999999988765 8999999999999874321000 0011111110 001
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
...+..++|+|++++.++..... .+| +++.+.++
T Consensus 215 ~~~~~~~~dva~~~~~l~s~~~~~~~G-----------~~i~vdgg 249 (252)
T PRK12747 215 FNRLGEVEDIADTAAFLASPDSRWVTG-----------QLIDVSGG 249 (252)
T ss_pred ccCCCCHHHHHHHHHHHcCccccCcCC-----------cEEEecCC
Confidence 23477899999999988764322 222 77777665
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=169.00 Aligned_cols=221 Identities=17% Similarity=0.101 Sum_probs=158.6
Q ss_pred EEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-CccEEEEc
Q 011841 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PFTHVLHL 200 (476)
Q Consensus 122 LVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~d~Vi~~ 200 (476)
|||||+|+||++++++|+++|++|++++|+.+.. ...........+++++.+|++|.+++.++++.. ++|++||+
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ 76 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRL----AAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT 76 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence 6999999999999999999999999999954321 111111112347889999999999999999865 47999999
Q ss_pred cccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 011841 201 AAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 201 Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
+|.... +...++.+..+++|+.++.+++++....+. .+||++||.+.+... .+...|+.+|.+
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-g~iv~~ss~~~~~~~------------~~~~~Y~~sK~a 143 (230)
T PRK07041 77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPG-GSLTFVSGFAAVRPS------------ASGVLQGAINAA 143 (230)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCC-eEEEEECchhhcCCC------------CcchHHHHHHHH
Confidence 997432 223456678899999999999996655444 499999998876432 456789999999
Q ss_pred HHHHHHHHHHHh-CCcEEEEeeCcccCCCCCC--CCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHH
Q 011841 277 GEEIAHTYNHIY-GLALTGLRFFTVYGPWGRP--DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353 (476)
Q Consensus 277 ~E~~~~~~~~~~-gi~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l 353 (476)
.+.+++.++.+. ++++++++||.+-++.... ......+........+. ..+..++|+|++++.++
T Consensus 144 ~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~dva~~~~~l~ 211 (230)
T PRK07041 144 LEALARGLALELAPVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAAERLPA------------RRVGQPEDVANAILFLA 211 (230)
T ss_pred HHHHHHHHHHHhhCceEEEEeecccccHHHHhhhccchHHHHHHHHhcCCC------------CCCcCHHHHHHHHHHHh
Confidence 999999988775 6899999999987653210 00011122222222111 12456799999999998
Q ss_pred hhcCcCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 354 DTAGKSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 354 ~~~~~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
.... ..| ++|++.++.++
T Consensus 212 ~~~~-~~G-----------~~~~v~gg~~~ 229 (230)
T PRK07041 212 ANGF-TTG-----------STVLVDGGHAI 229 (230)
T ss_pred cCCC-cCC-----------cEEEeCCCeec
Confidence 7532 222 89999887643
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=170.01 Aligned_cols=206 Identities=13% Similarity=0.064 Sum_probs=150.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+++||||+|+||.+++++|+++|++|++++|+.+... ....... ...++.++.+|++|.+++.++++.+
T Consensus 4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (241)
T PRK07454 4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALE----ALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999999543211 1111111 1247889999999999988887642
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+|||+||.... +.+.++.+..+++|+.++.++++.+ ++.+. ++||++||...+++.
T Consensus 80 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~~~--------- 149 (241)
T PRK07454 80 QFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGG-GLIINVSSIAARNAF--------- 149 (241)
T ss_pred HcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC-cEEEEEccHHhCcCC---------
Confidence 57999999997432 2233456678999999988888775 33443 489999998877532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++||||.+-.+....... .... ....
T Consensus 150 ---~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~~~-------------~~~~-------~~~~ 206 (241)
T PRK07454 150 ---PQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTETV-------------QADF-------DRSA 206 (241)
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCccccccc-------------cccc-------cccc
Confidence 34578999999999998887644 48999999999998774221100 0000 0123
Q ss_pred ceeHHHHHHHHHHHHhhcCc
Q 011841 339 FTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~ 358 (476)
++.++|+|++++.++..+..
T Consensus 207 ~~~~~~va~~~~~l~~~~~~ 226 (241)
T PRK07454 207 MLSPEQVAQTILHLAQLPPS 226 (241)
T ss_pred CCCHHHHHHHHHHHHcCCcc
Confidence 57899999999999987743
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-19 Score=168.90 Aligned_cols=225 Identities=16% Similarity=0.138 Sum_probs=157.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++++||||||+|+||.+++++|+++|++|++++|+.+.. ......... ...+.++.+|+.|.++++++++.+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGC----QAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRE 81 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999854321 122222111 235788999999999988877653
Q ss_pred ---CccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+|||+||... .+...++.+..+++|+.++..+++++ ++.+. .++|++||...+.+.
T Consensus 82 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~-------- 152 (252)
T PRK07035 82 RHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGG-GSIVNVASVNGVSPG-------- 152 (252)
T ss_pred HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-cEEEEECchhhcCCC--------
Confidence 5799999998632 12233445678999999998888776 33444 389999997543221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.+.+++.+..++ |++++.|+||.|..+..........+.....+..+. .
T Consensus 153 ----~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~------------~ 216 (252)
T PRK07035 153 ----DFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIPL------------R 216 (252)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCcccccccCCHHHHHHHHccCCC------------C
Confidence 455789999999999999988764 799999999999776422111011222223222211 2
Q ss_pred eceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~ 380 (476)
.+..++|+|++++.++.+.... .| +++++.++
T Consensus 217 ~~~~~~~va~~~~~l~~~~~~~~~g-----------~~~~~dgg 249 (252)
T PRK07035 217 RHAEPSEMAGAVLYLASDASSYTTG-----------ECLNVDGG 249 (252)
T ss_pred CcCCHHHHHHHHHHHhCccccCccC-----------CEEEeCCC
Confidence 2567899999999988765432 22 77777654
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=172.69 Aligned_cols=226 Identities=15% Similarity=0.069 Sum_probs=157.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++++||||+|+||++++++|+++|++|++++|+.+.. .+..... ..++.++.+|++|.+++.++++.+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNG----AAVAASL--GERARFIATDITDDAAIERAVATVVAR 77 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999954321 1111111 246889999999999998888754
Q ss_pred --CccEEEEccccCCh---hhhhcChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~---~~~~~~~~~~~~~nv~gt~~ll~~a~~~--~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
++|+||||||.... ....++.+..+++|+.++..+++++... ....+||++||.+.+.+. .
T Consensus 78 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------~ 145 (261)
T PRK08265 78 FGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQ------------T 145 (261)
T ss_pred hCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC------------C
Confidence 68999999996422 2234556778999999999998876532 122489999997643221 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCC-cHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
....|+.+|.+.+.+++.++.++ |+++++|+||.+..+....-. ........+... ......+..
T Consensus 146 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~-----------~~p~~r~~~ 214 (261)
T PRK08265 146 GRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAP-----------FHLLGRVGD 214 (261)
T ss_pred CCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhhcccchhHHHHhhcc-----------cCCCCCccC
Confidence 34679999999999999988764 799999999998776321000 000001111100 001123567
Q ss_pred HHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 342 IDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
++|+|++++.++..... .+| +++.+.++.
T Consensus 215 p~dva~~~~~l~s~~~~~~tG-----------~~i~vdgg~ 244 (261)
T PRK08265 215 PEEVAQVVAFLCSDAASFVTG-----------ADYAVDGGY 244 (261)
T ss_pred HHHHHHHHHHHcCccccCccC-----------cEEEECCCe
Confidence 89999999999875432 233 778787764
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=196.34 Aligned_cols=235 Identities=19% Similarity=0.153 Sum_probs=165.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++||||||+|+||.++++.|+++|++|++++|+.+.. ...........++.++.+|++|.+++.++++..
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~----~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAA----EAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHH----HHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999965321 111111111147889999999999998888643
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.+..+..+++|+.++..+++++. +.+...+||++||...+...
T Consensus 496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~---------- 565 (681)
T PRK08324 496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPG---------- 565 (681)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCC----------
Confidence 67999999997432 22345566789999999999977764 34432489999997654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCccc-CCCCCCCCcHHHHHHHHHcCCceE----EEeeCCCCc
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVY-GPWGRPDMAYFFFTKDILQGKTID----VYKTQDDRE 334 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~ 334 (476)
.+...|+.+|.+.+.+++.+..++ |+++++|+|+.|| +++....... ..+....+.... .+ ..+.
T Consensus 566 --~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~~~--~~~~~~~g~~~~~~~~~~---~~~~ 638 (681)
T PRK08324 566 --PNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGEWI--EARAAAYGLSEEELEEFY---RARN 638 (681)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccchhh--hhhhhhccCChHHHHHHH---HhcC
Confidence 345789999999999999998765 5999999999998 5532211110 001111111110 12 2345
Q ss_pred eeEeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 335 VARDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+.+++++|+|++++.++... ...+| ++|++.++..
T Consensus 639 ~l~~~v~~~DvA~a~~~l~s~~~~~~tG-----------~~i~vdgG~~ 676 (681)
T PRK08324 639 LLKREVTPEDVAEAVVFLASGLLSKTTG-----------AIITVDGGNA 676 (681)
T ss_pred CcCCccCHHHHHHHHHHHhCccccCCcC-----------CEEEECCCch
Confidence 5678999999999999988532 22222 8999988764
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.5e-19 Score=169.13 Aligned_cols=225 Identities=13% Similarity=0.116 Sum_probs=157.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+++||||+++||++++++|+++|++|++++|... +....... ....++.++.+|++|++++.++++..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~---~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA---PETQAQVE--ALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH---HHHHHHHH--HcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999987431 11111111 11346889999999999999888743
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... ....++.+..+++|+.++..+++++.. .+...+||++||...+.+.
T Consensus 81 ~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~---------- 150 (251)
T PRK12481 81 MGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGG---------- 150 (251)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCC----------
Confidence 68999999997432 223456678899999999888887643 3322489999998766432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.....|+.+|.+.+.+++.++.+ +|+++++|+||.|-.+............+.+...-|. ..+
T Consensus 151 --~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~------------~~~ 216 (251)
T PRK12481 151 --IRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAALRADTARNEAILERIPA------------SRW 216 (251)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhcccChHHHHHHHhcCCC------------CCC
Confidence 23357999999999999988875 4899999999999776322100001111222221111 135
Q ss_pred eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 340 TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
..++|+|++++.++.... .-+| +++.+.++
T Consensus 217 ~~peeva~~~~~L~s~~~~~~~G-----------~~i~vdgg 247 (251)
T PRK12481 217 GTPDDLAGPAIFLSSSASDYVTG-----------YTLAVDGG 247 (251)
T ss_pred cCHHHHHHHHHHHhCccccCcCC-----------ceEEECCC
Confidence 678999999999886533 2232 67777654
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=169.35 Aligned_cols=219 Identities=13% Similarity=0.108 Sum_probs=156.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||.++++.|+++|++|++++|.... ...+.++.+|++|+++++++++..
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~--------------~~~~~~~~~D~~~~~~i~~~~~~~~~~ 69 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS--------------YNDVDYFKVDVSNKEQVIKGIDYVISK 69 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc--------------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999985431 126889999999999988887643
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++..+++++.. .+. ++||++||...+...
T Consensus 70 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 138 (258)
T PRK06398 70 YGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDK-GVIINIASVQSFAVT---------- 138 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-eEEEEeCcchhccCC----------
Confidence 57999999997432 223344567799999999999887643 333 489999998765422
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCC------CcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPD------MAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
.+...|+.+|.+.+.+++.++.++ ++++++|+||.|-.+..... .....+.+.... + ....
T Consensus 139 --~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~ 207 (258)
T PRK06398 139 --RNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAELEVGKDPEHVERKIRE------W---GEMH 207 (258)
T ss_pred --CCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhhccccCChhhhHHHHHh------h---hhcC
Confidence 456789999999999999998875 39999999999977632110 000000000000 0 0011
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
....+..++|+|++++.++..... .+| +++.+.++.
T Consensus 208 ~~~~~~~p~eva~~~~~l~s~~~~~~~G-----------~~i~~dgg~ 244 (258)
T PRK06398 208 PMKRVGKPEEVAYVVAFLASDLASFITG-----------ECVTVDGGL 244 (258)
T ss_pred CcCCCcCHHHHHHHHHHHcCcccCCCCC-----------cEEEECCcc
Confidence 122467799999999998865432 232 777777664
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=169.65 Aligned_cols=225 Identities=17% Similarity=0.085 Sum_probs=154.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
+|+++||||+|+||.++++.|+++|++|++++|+.+...+ ...... ...++.++.+|++|++.+.++++..
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQA----AADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTF 77 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999999986532222 111111 1246888999999999988888753
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ....++.+..+++|+.++..+++.+.. .+...+||++||...+.+.
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------- 146 (256)
T PRK08643 78 GDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGN----------- 146 (256)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCC-----------
Confidence 57999999987432 122344567899999998887776643 2323489999997643221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCC---------CcHHHHHHHHHcCCceEEEeeCC
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD---------MAYFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~ 331 (476)
.....|+.+|.+.+.+++.++.+ .|+++++|+||.+.++..... ....+....+.+..
T Consensus 147 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 216 (256)
T PRK08643 147 -PELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPMMFDIAHQVGENAGKPDEWGMEQFAKDI--------- 216 (256)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChhhhHHHhhhccccCCCchHHHHHHhccC---------
Confidence 24567999999999999888865 479999999999988732100 00000011111110
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
....+..++|+|+++..++.... ..+| .++.+.++.
T Consensus 217 ---~~~~~~~~~~va~~~~~L~~~~~~~~~G-----------~~i~vdgg~ 253 (256)
T PRK08643 217 ---TLGRLSEPEDVANCVSFLAGPDSDYITG-----------QTIIVDGGM 253 (256)
T ss_pred ---CCCCCcCHHHHHHHHHHHhCccccCccC-----------cEEEeCCCe
Confidence 11235678999999988886543 2332 777776654
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=170.57 Aligned_cols=212 Identities=15% Similarity=0.072 Sum_probs=151.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++++||||||+|+||.++++.|+++|++|++++|..+... ....... ...++.++.+|++|++++.++++.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~----~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 83 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLD----EVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999643211 1111111 1346889999999999998887753
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh-----cCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS-----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~-----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+|||+||.... +...++.+..+++|+.++.++++++.. .+. .+||++||.....+
T Consensus 84 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-g~iv~~sS~~~~~~--------- 153 (263)
T PRK07814 84 AFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGG-GSVINISSTMGRLA--------- 153 (263)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCC-eEEEEEccccccCC---------
Confidence 67999999986332 233456778899999999999999864 333 48999999653221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
..+...|+.+|.+.+.+++.+..++ +++++.|+||.+..+....-..-..+...+....+. ..
T Consensus 154 ---~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~~ 218 (263)
T PRK07814 154 ---GRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVVAANDELRAPMEKATPL------------RR 218 (263)
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhccCCHHHHHHHHhcCCC------------CC
Confidence 1456789999999999999988775 589999999998765321100001122222211111 12
Q ss_pred ceeHHHHHHHHHHHHhhc
Q 011841 339 FTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~ 356 (476)
+..++|+|++++.++...
T Consensus 219 ~~~~~~va~~~~~l~~~~ 236 (263)
T PRK07814 219 LGDPEDIAAAAVYLASPA 236 (263)
T ss_pred CcCHHHHHHHHHHHcCcc
Confidence 457899999999988654
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8e-19 Score=167.64 Aligned_cols=215 Identities=15% Similarity=0.126 Sum_probs=155.9
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
.+++|+||||+|+||.+++++|+++|++|++++|+... ............+++++.+|++|.+++.++++..
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKE----LEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHH----HHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999999985432 1112222222257899999999999988888743
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+|||++|.... +...++.+..+++|+.++..+++++.+. +. ++||++||...+...
T Consensus 81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~iv~~ss~~~~~~~------------ 147 (237)
T PRK07326 81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGG-GYIINISSLAGTNFF------------ 147 (237)
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCC-eEEEEECChhhccCC------------
Confidence 67999999987543 1233445678999999999998887542 33 389999997654321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.+...|+.+|.+.+.+++.+..+ .|+++++||||.+.++....... . .. ...+.
T Consensus 148 ~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~~~~-----------~----------~~--~~~~~ 204 (237)
T PRK07326 148 AGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGHTPS-----------E----------KD--AWKIQ 204 (237)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCcccccccc-----------h----------hh--hccCC
Confidence 34567999999999988887644 48999999999998764221100 0 00 01367
Q ss_pred HHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 342 IDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
++|+++.++.++..+..... ..+.+.++++
T Consensus 205 ~~d~a~~~~~~l~~~~~~~~-----------~~~~~~~~~~ 234 (237)
T PRK07326 205 PEDIAQLVLDLLKMPPRTLP-----------SKIEVRPSRP 234 (237)
T ss_pred HHHHHHHHHHHHhCCccccc-----------cceEEecCCC
Confidence 89999999999988765433 5566665554
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=167.92 Aligned_cols=223 Identities=16% Similarity=0.121 Sum_probs=156.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+|+++||||+|+||.++++.|+++|++|+++.+.... ..... ...++.++.+|++|++++.++++..
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~---~~~~l-----~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAEN---EAKEL-----REKGVFTIKCDVGNRDQVKKSKEVVEKE 76 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHH---HHHHH-----HhCCCeEEEecCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999988764321 11111 1226889999999999999888753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++..+++. +++.+. ++||++||...++..
T Consensus 77 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS~~~~~~~---------- 145 (255)
T PRK06463 77 FGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKN-GAIVNIASNAGIGTA---------- 145 (255)
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcCHHhCCCC----------
Confidence 68999999997432 223455667899999997666554 444443 489999998776421
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCC---CCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRP---DMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
..+...|+.+|.+.+.+++.++.+ .|+++++++||.|-.+.... ......+...+....+ .
T Consensus 146 -~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------~ 212 (255)
T PRK06463 146 -AEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTV------------L 212 (255)
T ss_pred -CCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCC------------c
Confidence 134467999999999999998876 38999999999987653211 1111112222222211 1
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++..... .+| +++.+.++.
T Consensus 213 ~~~~~~~~va~~~~~l~s~~~~~~~G-----------~~~~~dgg~ 247 (255)
T PRK06463 213 KTTGKPEDIANIVLFLASDDARYITG-----------QVIVADGGR 247 (255)
T ss_pred CCCcCHHHHHHHHHHHcChhhcCCCC-----------CEEEECCCe
Confidence 2356789999999999876543 232 788887765
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=172.22 Aligned_cols=189 Identities=16% Similarity=0.036 Sum_probs=133.6
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
....+|+|+||||+|+||.+++++|+++|++|++++|+.+.......... .......+.++.+|+.|.++++++++..
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~-~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARIT-AATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-HhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 34577999999999999999999999999999999996442222111111 1111346889999999999998887643
Q ss_pred ----CccEEEEccccCChh--hhhcChHHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCccccC--CCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGVR--YAMQNPQSYVASNIAG----FVNLLEVCKSVNPQPSIVWASSSSVYG--LNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~~--~~~~~~~~~~~~nv~g----t~~ll~~a~~~~~~~~~V~~SS~~vyg--~~~~~~~~E~ 260 (476)
++|+||||||..... ...++.+..+++|+.+ +..+++.+++.+.. +||++||.+.+. ........++
T Consensus 91 ~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~-~iV~vSS~~~~~~~~~~~~~~~~~ 169 (306)
T PRK06197 91 AAYPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGS-RVVTVSSGGHRIRAAIHFDDLQWE 169 (306)
T ss_pred hhCCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCC-EEEEECCHHHhccCCCCccccCcc
Confidence 589999999975432 2345667889999999 55556666665543 999999987543 2111111111
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEE--eeCcccCCCC
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGL--RFFTVYGPWG 305 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~il--Rp~~v~G~~~ 305 (476)
.+ ..+...|+.+|++.+.+.+.+++++ |++++++ .||.|..+..
T Consensus 170 ~~-~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~~ 218 (306)
T PRK06197 170 RR-YNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTELA 218 (306)
T ss_pred cC-CCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCccc
Confidence 11 2456789999999999999988765 6666554 6999987643
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=167.71 Aligned_cols=225 Identities=16% Similarity=0.170 Sum_probs=158.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++||||||+|+||.++++.|+++|++|++++|+ +..+ ........ ...++.++.+|++|.+++.++++.+
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~-~~~~~~~~--~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 88 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWD-ETRRLIEK--EGRKVTFVQVDLTKPESAEKVVKEALEE 88 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHH-HHHHHHHh--cCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985 2111 11111111 1246889999999999998888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... ....++.+..+++|+.++..+++++. +.+. +++|++||...+.+.
T Consensus 89 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 157 (258)
T PRK06935 89 FGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGS-GKIINIASMLSFQGG---------- 157 (258)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCC-eEEEEECCHHhccCC----------
Confidence 67999999997432 22344566789999999888877654 3444 389999998866432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.....|+.+|.+.+.+++.+++++ |+++++|+||.|..+..............+....+ ...+
T Consensus 158 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~ 223 (258)
T PRK06935 158 --KFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKRIP------------AGRW 223 (258)
T ss_pred --CCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcccChHHHHHHHhcCC------------CCCC
Confidence 234579999999999999988764 79999999999988743211000111112221111 1236
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
..++|++..++.++..... .+| .++.+.++
T Consensus 224 ~~~~dva~~~~~l~s~~~~~~~G-----------~~i~~dgg 254 (258)
T PRK06935 224 GEPDDLMGAAVFLASRASDYVNG-----------HILAVDGG 254 (258)
T ss_pred CCHHHHHHHHHHHcChhhcCCCC-----------CEEEECCC
Confidence 7789999999988865432 222 77877765
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.1e-19 Score=178.95 Aligned_cols=186 Identities=19% Similarity=0.159 Sum_probs=134.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++|+||||+|+||.++++.|+++|++|++++|+.+..+....... .....+.++.+|++|.++++++++..
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELG---IPPDSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh---ccCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999985432221111110 12346889999999999998888652
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCC-CCeEEEecCccccCCCC--C--CC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNP-QPSIVWASSSSVYGLNT--Q--VP 256 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~-~~~~V~~SS~~vyg~~~--~--~~ 256 (476)
++|+||||||.... ..+.++.+..+++|+.|+.++++++.. .+. ..+||++||...+.... . .+
T Consensus 81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~ 160 (322)
T PRK07453 81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIP 160 (322)
T ss_pred CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCC
Confidence 57999999997432 234456778899999999999887653 222 13899999987643110 0 00
Q ss_pred --CCC-----------------CCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEeeCcccCCC
Q 011841 257 --FSE-----------------SHRTDQPASLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPW 304 (476)
Q Consensus 257 --~~E-----------------~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G~~ 304 (476)
.+. +.....|...|+.||++.+.+++++++++ |++++++|||.|++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~ 231 (322)
T PRK07453 161 APADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP 231 (322)
T ss_pred CccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc
Confidence 000 01123567889999999998888887765 7999999999998643
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=166.71 Aligned_cols=165 Identities=17% Similarity=0.094 Sum_probs=132.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-C
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-P 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~ 193 (476)
..+++|+||||+|+||+++++.|+++|+ +|++++|+.+...+ ...++.++.+|+.|.+++.++++.. +
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----------LGPRVVPLQLDVTDPASVAAAAEAASD 73 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----------cCCceEEEEecCCCHHHHHHHHHhcCC
Confidence 4568999999999999999999999999 99999985432111 2347899999999999999988865 4
Q ss_pred ccEEEEcccc-CCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQ-AGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 194 ~d~Vi~~Ag~-~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
+|+|||+||. ... ....++....+++|+.++.++++++. +.+. ++||++||...+.+.
T Consensus 74 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~~sS~~~~~~~------------ 140 (238)
T PRK08264 74 VTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGG-GAIVNVLSVLSWVNF------------ 140 (238)
T ss_pred CCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcChhhccCC------------
Confidence 7999999997 221 22345566789999999999998864 3444 389999998766432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCC
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGP 303 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~ 303 (476)
.+...|+.+|.+.|.+++.++.+. +++++++|||.+.++
T Consensus 141 ~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~ 182 (238)
T PRK08264 141 PNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTD 182 (238)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCccccc
Confidence 355789999999999999887664 899999999999776
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=166.69 Aligned_cols=223 Identities=14% Similarity=0.099 Sum_probs=156.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+++||||+|+||+++++.|+++|++|+++++... ......... . ..++.++.+|++|++++.++++..
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~---~~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSE---DAAEALADE-L-GDRAIALQADVTDREQVQAMFATATEH 77 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCH---HHHHHHHHH-h-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999998765332 111111111 1 247889999999999998888753
Q ss_pred ---CccEEEEccccCC----------hhhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCC
Q 011841 193 ---PFTHVLHLAAQAG----------VRYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQV 255 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~----------~~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~ 255 (476)
++|+||||||... .+.+.++....+++|+.++.++++++.. .+. .+||++||......
T Consensus 78 ~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~iss~~~~~~---- 152 (253)
T PRK08642 78 FGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGF-GRIINIGTNLFQNP---- 152 (253)
T ss_pred hCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCC-eEEEEECCccccCC----
Confidence 3799999998521 1223344567899999999999998753 333 38999998653211
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCC
Q 011841 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDD 332 (476)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (476)
..+...|+.+|.+.|.+++.+++++ |++++.|+||.+..+...... .......+.+..++
T Consensus 153 --------~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~~~~-~~~~~~~~~~~~~~-------- 215 (253)
T PRK08642 153 --------VVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDASAAT-PDEVFDLIAATTPL-------- 215 (253)
T ss_pred --------CCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhhccC-CHHHHHHHHhcCCc--------
Confidence 1455689999999999999998774 799999999999775322111 11222222222111
Q ss_pred CceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 333 REVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 333 ~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
..+.+++|++++++.++..+. ..+| +++.+.++
T Consensus 216 ----~~~~~~~~va~~~~~l~~~~~~~~~G-----------~~~~vdgg 249 (253)
T PRK08642 216 ----RKVTTPQEFADAVLFFASPWARAVTG-----------QNLVVDGG 249 (253)
T ss_pred ----CCCCCHHHHHHHHHHHcCchhcCccC-----------CEEEeCCC
Confidence 237889999999999997643 2232 77877765
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-19 Score=170.33 Aligned_cols=198 Identities=15% Similarity=0.099 Sum_probs=144.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~----- 192 (476)
+|+|+||||+|+||.++++.|+++|++|++++|+.+. ............++.++.+|++|.+++.++++..
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g 77 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDA----LQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHG 77 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4789999999999999999999999999999986432 1111111111126889999999999998877653
Q ss_pred CccEEEEccccCChh-----hhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGVR-----YAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~-----~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||..... ...++.+..+++|+.++..+++. +++.+. ++||++||...+.+.
T Consensus 78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~-~~iv~isS~~~~~~~----------- 145 (257)
T PRK07024 78 LPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARR-GTLVGIASVAGVRGL----------- 145 (257)
T ss_pred CCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCC-CEEEEEechhhcCCC-----------
Confidence 479999999974321 23345678899999999987774 445554 389999997654221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
+....|+.+|.+.+.+++.++.+ +|++++++|||.|.++..... . + .. ..++
T Consensus 146 -~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~------------~-----~-----~~--~~~~ 200 (257)
T PRK07024 146 -PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPMTAHN------------P-----Y-----PM--PFLM 200 (257)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCchhhcC------------C-----C-----CC--CCcc
Confidence 33467999999999999888644 489999999999988732110 0 0 00 0135
Q ss_pred eHHHHHHHHHHHHhhc
Q 011841 341 YIDDVVKGCVGALDTA 356 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~ 356 (476)
.++|+++.++.++...
T Consensus 201 ~~~~~a~~~~~~l~~~ 216 (257)
T PRK07024 201 DADRFAARAARAIARG 216 (257)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 7899999999999753
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=168.15 Aligned_cols=225 Identities=14% Similarity=0.072 Sum_probs=157.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
+++||||||+|+||.++++.|+++|++|+++.+.+... ......... ....+.++.+|++|.++++++++..
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEG---AKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHH---HHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999999987643311 111111111 1346889999999999988877643
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ....++.+..+++|+.++..+++++... +..++||++||..... +
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~------------~ 146 (256)
T PRK12743 79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHT------------P 146 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccC------------C
Confidence 57999999997432 2234556778999999999999887542 2224899999975321 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
..+...|+.+|.+.+.+++.++.++ |++++.|+||.++++...... .........+.++ ..+.
T Consensus 147 ~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~~--~~~~~~~~~~~~~------------~~~~ 212 (256)
T PRK12743 147 LPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMDD--SDVKPDSRPGIPL------------GRPG 212 (256)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCccccccC--hHHHHHHHhcCCC------------CCCC
Confidence 1456789999999999999888754 799999999999988533211 1111111111111 1245
Q ss_pred eHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCc
Q 011841 341 YIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
+++|++++++.++...... .| .++.+.++..
T Consensus 213 ~~~dva~~~~~l~~~~~~~~~G-----------~~~~~dgg~~ 244 (256)
T PRK12743 213 DTHEIASLVAWLCSEGASYTTG-----------QSLIVDGGFM 244 (256)
T ss_pred CHHHHHHHHHHHhCccccCcCC-----------cEEEECCCcc
Confidence 7899999999888654322 22 7788877643
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=169.50 Aligned_cols=230 Identities=14% Similarity=0.092 Sum_probs=159.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+|+||||+|+||.++++.|+++|++|++++|+.+..++........ .....+.++.+|++|++++.++++..
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARD-VAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-cCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999654322211111110 01346889999999999988888743
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.++..+++++.. .+. .+||++||...+...
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 152 (260)
T PRK07063 84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGR-GSIVNIASTHAFKII---------- 152 (260)
T ss_pred hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCC-eEEEEECChhhccCC----------
Confidence 67999999997432 223455677899999999998888642 333 389999998654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.+...|+.+|.+.+.+++.++.++ |++++.|+||.|-.+..... ..............+.
T Consensus 153 --~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 219 (260)
T PRK07063 153 --PGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQPM----------- 219 (260)
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCCC-----------
Confidence 345679999999999999988765 79999999999977632110 0000011111111111
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+..++|+|++++.++..... -+| +++.+.++..
T Consensus 220 -~r~~~~~~va~~~~fl~s~~~~~itG-----------~~i~vdgg~~ 255 (260)
T PRK07063 220 -KRIGRPEEVAMTAVFLASDEAPFINA-----------TCITIDGGRS 255 (260)
T ss_pred -CCCCCHHHHHHHHHHHcCccccccCC-----------cEEEECCCee
Confidence 1256789999999998866432 233 7777776643
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=168.15 Aligned_cols=226 Identities=15% Similarity=0.093 Sum_probs=158.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|++|||||+|+||.++++.|+++|++|++++|+.+..+ ....... ...++..+.+|++|++++.++++..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~----~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALE----KLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHH----HHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998543221 1111111 1246888999999999998887643
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ....+..+..+++|+.++..+++++.. .+...++|++||.+..-..
T Consensus 83 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~--------- 153 (253)
T PRK05867 83 ELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIIN--------- 153 (253)
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCC---------
Confidence 68999999997432 223345567889999999999888643 3322379999987532110
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.......|+.+|.+.+.+++.++.++ |+++++|+||.|-.+..... ...........+. ..
T Consensus 154 -~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~~---~~~~~~~~~~~~~------------~r 217 (253)
T PRK05867 154 -VPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEPY---TEYQPLWEPKIPL------------GR 217 (253)
T ss_pred -CCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCcccccc---hHHHHHHHhcCCC------------CC
Confidence 00123679999999999999988764 89999999999987743221 1112222222111 13
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+..++|+|++++.++.... ..+| +++.+.++.
T Consensus 218 ~~~p~~va~~~~~L~s~~~~~~tG-----------~~i~vdgG~ 250 (253)
T PRK05867 218 LGRPEELAGLYLYLASEASSYMTG-----------SDIVIDGGY 250 (253)
T ss_pred CcCHHHHHHHHHHHcCcccCCcCC-----------CeEEECCCc
Confidence 5678999999999886533 2233 778777764
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=170.54 Aligned_cols=225 Identities=16% Similarity=0.144 Sum_probs=157.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+++++||||+|+||++++++|+++|++|++++|+.+..+ ........ ..++.++.+|++|.+++.++++..
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 83 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAE----AVVAEIKAAGGEALAVKADVLDKESLEQARQQILE 83 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998543211 11111111 236888999999999988877642
Q ss_pred ---CccEEEEccccCCh-------------------hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCc
Q 011841 193 ---PFTHVLHLAAQAGV-------------------RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSS 246 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-------------------~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~ 246 (476)
++|+||||||.... +...++.+..+++|+.++..+++.+ ++.+. ++||++||.
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~ii~isS~ 162 (278)
T PRK08277 84 DFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKG-GNIINISSM 162 (278)
T ss_pred HcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEEccc
Confidence 67999999996322 1223456678999999988776654 33443 389999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC-----CCcHHHHHHHH
Q 011841 247 SVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP-----DMAYFFFTKDI 318 (476)
Q Consensus 247 ~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~-----~~~~~~~~~~~ 318 (476)
..+... .+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... +.........+
T Consensus 163 ~~~~~~------------~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~ 230 (278)
T PRK08277 163 NAFTPL------------TKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPGFFLTEQNRALLFNEDGSLTERANKI 230 (278)
T ss_pred hhcCCC------------CCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeccCcCcchhhhhccccccchhHHHHH
Confidence 876432 345679999999999999988776 7999999999999884321 00011111222
Q ss_pred HcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh-cC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 319 LQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT-AG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 319 ~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~-~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
....+ ...+..++|+|++++.++.. .. ..+| +++.+.++
T Consensus 231 ~~~~p------------~~r~~~~~dva~~~~~l~s~~~~~~~tG-----------~~i~vdgG 271 (278)
T PRK08277 231 LAHTP------------MGRFGKPEELLGTLLWLADEKASSFVTG-----------VVLPVDGG 271 (278)
T ss_pred hccCC------------ccCCCCHHHHHHHHHHHcCccccCCcCC-----------CEEEECCC
Confidence 22211 12366789999999998765 22 2233 77777665
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=168.44 Aligned_cols=231 Identities=10% Similarity=0.028 Sum_probs=159.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||+|+||.+++++|+++|++|++++|+.+..+...+.... ....++.++.+|++|+++++++++.+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKS--ESNVDVSYIVADLTKREDLERTVKELKNI 83 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--hcCCceEEEEecCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999964322211111111 11346889999999999998888743
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|++|||||.... +.+.++.+..+++|+.+...+++.+ ++.+. ++||++||.+.+.+.
T Consensus 84 g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~-g~Ii~isS~~~~~~~----------- 151 (263)
T PRK08339 84 GEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGF-GRIIYSTSVAIKEPI----------- 151 (263)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEcCccccCCC-----------
Confidence 57999999997432 2344566788999988877766654 44444 389999998754221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC---------CCcHHHHHHHHHcCCceEEEeeCC
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP---------DMAYFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~ 331 (476)
.....|+.+|.+.+.+++.++.++ |+++++|.||.|..+.... ..........+.+..+
T Consensus 152 -~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------- 222 (263)
T PRK08339 152 -PNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKPIP-------- 222 (263)
T ss_pred -CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhccCC--------
Confidence 334679999999999999988775 7999999999997762110 0000111111111111
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
...+..++|+|++++.++.... ..+| +++.+.++..++
T Consensus 223 ----~~r~~~p~dva~~v~fL~s~~~~~itG-----------~~~~vdgG~~~~ 261 (263)
T PRK08339 223 ----LGRLGEPEEIGYLVAFLASDLGSYING-----------AMIPVDGGRLNS 261 (263)
T ss_pred ----cccCcCHHHHHHHHHHHhcchhcCccC-----------ceEEECCCcccc
Confidence 1236778999999999886533 2333 778887765543
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-18 Score=167.59 Aligned_cols=227 Identities=16% Similarity=0.100 Sum_probs=160.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++++|+||||+|+||.++++.|+++|++ |++++|..+.. ........ ....+.++.+|++|++++.++++..
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKG----EAQAAELEALGAKAVFVQADLSDVEDCRRVVAAAD 79 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHH----HHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHH
Confidence 56789999999999999999999999999 99999854321 11111111 1336778999999999998888753
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+|||+||.... +...+..+..+++|+.++.++++++.+ .+..++||++||...++..
T Consensus 80 ~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-------- 151 (260)
T PRK06198 80 EAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ-------- 151 (260)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC--------
Confidence 57999999997432 223344567899999999999887743 2223489999998876533
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC--C---CcHHHHHHHHHcCCceEEEeeCCC
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP--D---MAYFFFTKDILQGKTIDVYKTQDD 332 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~--~---~~~~~~~~~~~~g~~~~~~~~~~~ 332 (476)
.....|+.+|.+.|.+++.++.++ +++++.++||+++++.... . .....+........
T Consensus 152 ----~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~---------- 217 (260)
T PRK06198 152 ----PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQREFHGAPDDWLEKAAATQ---------- 217 (260)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhhhhccCCChHHHHHHhccC----------
Confidence 335679999999999999888765 6999999999999885321 0 00111222221111
Q ss_pred CceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 333 REVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 333 ~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
....+++++|++++++.++..... ..| +++++.++.
T Consensus 218 --~~~~~~~~~~~a~~~~~l~~~~~~~~~G-----------~~~~~~~~~ 254 (260)
T PRK06198 218 --PFGRLLDPDEVARAVAFLLSDESGLMTG-----------SVIDFDQSV 254 (260)
T ss_pred --CccCCcCHHHHHHHHHHHcChhhCCccC-----------ceEeECCcc
Confidence 123467899999999998875532 122 788887754
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-19 Score=167.43 Aligned_cols=204 Identities=17% Similarity=0.136 Sum_probs=149.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++|+||||+|+||.+++++|+++|++|++++|+....+....... ....++.++.+|++|++++.++++..
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVE---AYGVKVVIATADVSDYEEVTAAIEQLKNE 81 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---HhCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999996532221111111 11346889999999999998888743
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+|||++|.... +...++.+..+++|+.++.++++++.. .+. +++|++||...+.+.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~ss~~~~~~~---------- 150 (239)
T PRK07666 82 LGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQS-GDIINISSTAGQKGA---------- 150 (239)
T ss_pred cCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-cEEEEEcchhhccCC----------
Confidence 57999999987432 123344567899999999999887753 344 389999997754332
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.+ .|++++++|||.+.++..... ....+ + ...+
T Consensus 151 --~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~~--------~~~~~----------~---~~~~ 207 (239)
T PRK07666 151 --AVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVDL--------GLTDG----------N---PDKV 207 (239)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhhc--------ccccc----------C---CCCC
Confidence 34567999999999998887754 489999999999988742210 00000 0 1235
Q ss_pred eeHHHHHHHHHHHHhhc
Q 011841 340 TYIDDVVKGCVGALDTA 356 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~ 356 (476)
+.++|+|+.++.++.+.
T Consensus 208 ~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 208 MQPEDLAEFIVAQLKLN 224 (239)
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 78899999999999875
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-18 Score=164.02 Aligned_cols=219 Identities=17% Similarity=0.152 Sum_probs=154.9
Q ss_pred EEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC-----Cc
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-----PF 194 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~-----~~ 194 (476)
|||||++|+||.++++.|+++|++|++++|.... ........... ...+.++.+|++|.+++.+++++. ++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEE---GAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPI 77 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchh---HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 5899999999999999999999999999986521 11111111111 235889999999999998888653 57
Q ss_pred cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCcc-ccCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSS-VYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 195 d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~-vyg~~~~~~~~E~~~~~~ 265 (476)
|+|||++|.... +...+.++..+++|+.++..+++.+.. .+. ++||++||.+ +||. .
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~~sS~~~~~g~-------------~ 143 (239)
T TIGR01830 78 DILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRS-GRIINISSVVGLMGN-------------A 143 (239)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-eEEEEECCccccCCC-------------C
Confidence 999999997532 233456678899999999999998865 333 4899999965 4442 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 266 PASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
+...|+.+|.+.+.+++.+.++ .|+.++++|||.+.++.... ....+...+....+. ..+.++
T Consensus 144 ~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~--~~~~~~~~~~~~~~~------------~~~~~~ 209 (239)
T TIGR01830 144 GQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDK--LSEKVKKKILSQIPL------------GRFGTP 209 (239)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhh--cChHHHHHHHhcCCc------------CCCcCH
Confidence 3567999999999998887765 48999999999987763221 112222333322221 125678
Q ss_pred HHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCC
Q 011841 343 DDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
+|++++++.++....... .| ++||+.++
T Consensus 210 ~~~a~~~~~~~~~~~~~~--~g--------~~~~~~~g 237 (239)
T TIGR01830 210 EEVANAVAFLASDEASYI--TG--------QVIHVDGG 237 (239)
T ss_pred HHHHHHHHHHhCcccCCc--CC--------CEEEeCCC
Confidence 999999998885432211 11 89999764
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=167.34 Aligned_cols=225 Identities=12% Similarity=0.113 Sum_probs=156.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
+|+++||||+|+||+++++.|+++|++|++++|+..... ....... ...++.++.+|++|++++.++++.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLE----EAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKF 76 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999999998643221 1111111 1247889999999999998887653
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.+ .+...+||++||...+...
T Consensus 77 ~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~----------- 145 (252)
T PRK07677 77 GRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAG----------- 145 (252)
T ss_pred CCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCC-----------
Confidence 67999999986322 233445677899999999999998743 2323489999987643211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEeeCcccCCCCCCCC-cHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.....|+.+|.+.+.+++.++.+ +|++++.|+||.+.++...... ....+.+.+.+..++ ..
T Consensus 146 -~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 212 (252)
T PRK07677 146 -PGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVPL------------GR 212 (252)
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCCC------------CC
Confidence 23457999999999999987766 3799999999999864321110 012233333332221 13
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+...+|+++++..++.... ..+| +++.+.++.
T Consensus 213 ~~~~~~va~~~~~l~~~~~~~~~g-----------~~~~~~gg~ 245 (252)
T PRK07677 213 LGTPEEIAGLAYFLLSDEAAYING-----------TCITMDGGQ 245 (252)
T ss_pred CCCHHHHHHHHHHHcCccccccCC-----------CEEEECCCe
Confidence 5678999999988876532 2222 677776653
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-19 Score=169.75 Aligned_cols=208 Identities=15% Similarity=0.114 Sum_probs=146.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
|+|+||||+|+||.++++.|+++|++|++++|..+. ....... . ..++.++.+|+.|.+++.++++.. +
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~-~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 74 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQER----LQELKDE-L-GDNLYIAQLDVRNRAAIEEMLASLPAEWRN 74 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHH-h-ccceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999995431 1111111 1 236889999999999988877642 5
Q ss_pred ccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 194 ~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
+|+|||+||... .+.+.++.+..+++|+.++..+++.+ ++.+.. +||++||...+.. .
T Consensus 75 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~------------~ 141 (248)
T PRK10538 75 IDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHG-HIINIGSTAGSWP------------Y 141 (248)
T ss_pred CCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEECCcccCCC------------C
Confidence 799999998632 12234556778999999977666654 445544 8999999765321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.+...|+.+|.+.+.+.+.++.+. ++++++++||.+.|+......+... .... ...+ . ...++.
T Consensus 142 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~~~~~~~~~~-~~~~-----~~~~---~----~~~~~~ 208 (248)
T PRK10538 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGD-DGKA-----EKTY---Q----NTVALT 208 (248)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccccchhhccCc-HHHH-----Hhhc---c----ccCCCC
Confidence 345689999999999999988764 7999999999998763211000000 0000 0001 0 113568
Q ss_pred HHHHHHHHHHHHhhcCc
Q 011841 342 IDDVVKGCVGALDTAGK 358 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~ 358 (476)
++|+|++++.++..+..
T Consensus 209 ~~dvA~~~~~l~~~~~~ 225 (248)
T PRK10538 209 PEDVSEAVWWVATLPAH 225 (248)
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 99999999999876543
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-18 Score=162.62 Aligned_cols=214 Identities=20% Similarity=0.171 Sum_probs=153.0
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc----C
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV----V 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~----~ 192 (476)
.+|+|+||||+|+||.++++.|+++|++|++++|..... ...+++.+|++|.+++.++++. .
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 67 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD--------------FPGELFACDLADIEQTAATLAQINEIH 67 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc--------------cCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 357899999999999999999999999999999965420 0225789999999988777763 2
Q ss_pred CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||..... ...++.+..++.|+.++.++++++ ++.+.. +||++||.++|+.
T Consensus 68 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~------------- 133 (234)
T PRK07577 68 PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQG-RIVNICSRAIFGA------------- 133 (234)
T ss_pred CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEccccccCC-------------
Confidence 579999999975432 133456678999999988877665 445554 9999999887643
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC-cHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.....|+.+|.+.|.+++.++.+ +|+++++||||.+.++...... ........+....+. ..+.
T Consensus 134 ~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 201 (234)
T PRK07577 134 LDRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTRPVGSEEEKRVLASIPM------------RRLG 201 (234)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCcccccccccchhHHHHHhhcCCC------------CCCc
Confidence 23467999999999998887755 3899999999999887432110 001111222222111 1245
Q ss_pred eHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 341 YIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.++|+|++++.++..+.. .+| +++++.++.
T Consensus 202 ~~~~~a~~~~~l~~~~~~~~~g-----------~~~~~~g~~ 232 (234)
T PRK07577 202 TPEEVAAAIAFLLSDDAGFITG-----------QVLGVDGGG 232 (234)
T ss_pred CHHHHHHHHHHHhCcccCCccc-----------eEEEecCCc
Confidence 789999999999976532 222 788887654
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=169.02 Aligned_cols=228 Identities=16% Similarity=0.113 Sum_probs=155.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|++|||||+|+||+++++.|+++|++|++++|+ +..+ ....... ...++.++.+|++|.+++.++++.+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~----~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 78 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVS----ETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKE 78 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHH----HHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999985 3221 1112211 1236889999999999988877643
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ....+..+..+++|+.++..+++++. +.+ .+||++||...+...
T Consensus 79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~-------- 148 (272)
T PRK08589 79 QFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG--GSIINTSSFSGQAAD-------- 148 (272)
T ss_pred HcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEeCchhhcCCC--------
Confidence 57999999997532 12233456788899999887777643 333 489999998765322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCC--cHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM--AYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+...... ....+........ . . ...
T Consensus 149 ----~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~-~--~-----~~~ 216 (272)
T PRK08589 149 ----LYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLTGTSEDEAGKTFRENQ-K--W-----MTP 216 (272)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhcccchhhHHHHHhhhh-h--c-----cCC
Confidence 234679999999999999988765 799999999999876322100 0000000110000 0 0 001
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
...+..++|+|++++.++..... .+| +++.+.++.
T Consensus 217 ~~~~~~~~~va~~~~~l~s~~~~~~~G-----------~~i~vdgg~ 252 (272)
T PRK08589 217 LGRLGKPEEVAKLVVFLASDDSSFITG-----------ETIRIDGGV 252 (272)
T ss_pred CCCCcCHHHHHHHHHHHcCchhcCcCC-----------CEEEECCCc
Confidence 11356789999999998865432 232 777776654
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-18 Score=167.64 Aligned_cols=209 Identities=17% Similarity=0.166 Sum_probs=145.4
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh---cCCceEEEEeecCCHHHHHHhhccC----
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
+|+||||+|+||.++++.|+++|++|++++|.... .......... ....+.++.+|++|.+++.++++.+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAA---GLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAM 77 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcch---HHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 38999999999999999999999999999986321 1111111111 1223557889999999988877643
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHH----HHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIA----GFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~----gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... +...++....+++|+. ++..+++.+++.+.+ +||++||...+...
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~ii~~ss~~~~~~~----------- 145 (251)
T PRK07069 78 GGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPA-SIVNISSVAAFKAE----------- 145 (251)
T ss_pred CCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCc-EEEEecChhhccCC-----------
Confidence 57999999997543 2223345667888988 667777777776654 99999998876533
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeeCcccCCCCCCCC---cHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDM---AYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.....|+.+|.+.+.+++.++.+. +++++.++||.+.+|...... ........+.++.+
T Consensus 146 -~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------ 212 (251)
T PRK07069 146 -PDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEEATRKLARGVP------------ 212 (251)
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchhHHHHHhccCC------------
Confidence 345679999999999999887653 488999999999988532100 00111112222211
Q ss_pred eEeceeHHHHHHHHHHHHhhc
Q 011841 336 ARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~ 356 (476)
...+.+++|++++++.++..+
T Consensus 213 ~~~~~~~~~va~~~~~l~~~~ 233 (251)
T PRK07069 213 LGRLGEPDDVAHAVLYLASDE 233 (251)
T ss_pred CCCCcCHHHHHHHHHHHcCcc
Confidence 123567899999999877654
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=165.73 Aligned_cols=210 Identities=15% Similarity=0.125 Sum_probs=144.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEe-CCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC----
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLD-NFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~-R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
++|+||||+|+||.+++++|+++|++|+++. |+.+ ...+...... ...++.++.+|++|++++.++++.+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~ 77 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLH----AAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHD 77 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChH----HHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999998754 4221 1111111111 1236888999999999999888753
Q ss_pred -CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV------NPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~------~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+|||+||.... +...++.+..+++|+.++..+++++... +...+||++||...+.+..
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~------- 150 (247)
T PRK09730 78 EPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAP------- 150 (247)
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCC-------
Confidence 57999999997422 1223345678999999998887765432 1123799999976542211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.....|+.+|...|.+++.++.++ +++++++|||.+|+|....... ..+...+....++.
T Consensus 151 ----~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~~~-~~~~~~~~~~~~~~------------ 213 (247)
T PRK09730 151 ----GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGE-PGRVDRVKSNIPMQ------------ 213 (247)
T ss_pred ----CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccCCC-HHHHHHHHhcCCCC------------
Confidence 112459999999999998877654 8999999999999985432211 22233333332221
Q ss_pred eceeHHHHHHHHHHHHhhc
Q 011841 338 DFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~ 356 (476)
...+++|+|++++.++...
T Consensus 214 ~~~~~~dva~~~~~~~~~~ 232 (247)
T PRK09730 214 RGGQPEEVAQAIVWLLSDK 232 (247)
T ss_pred CCcCHHHHHHHHHhhcChh
Confidence 1236899999999988764
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=170.62 Aligned_cols=186 Identities=13% Similarity=0.042 Sum_probs=138.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++++||||+++||.+++++|+++|++|++++|+.+..++........ .....+.++.+|++|.++++++++..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~-~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTA-VPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-CCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 56799999999999999999999999999999999655333332222211 12236889999999999999887653
Q ss_pred --CccEEEEccccCCh---hhhhcChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEecCccccCC-CCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCKS---VNPQPSIVWASSSSVYGL-NTQVPFSESHRT 263 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~---~~~~~~~~~~~~~nv~gt~~ll~~a~~---~~~~~~~V~~SS~~vyg~-~~~~~~~E~~~~ 263 (476)
++|++|||||.... ..+.++.+..+++|+.+...+++.+.. .+. .+||++||.+.+.. ....+..++..
T Consensus 91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~-~riv~vsS~~~~~~~~~~~~~~~~~~- 168 (313)
T PRK05854 91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGR-ARVTSQSSIAARRGAINWDDLNWERS- 168 (313)
T ss_pred CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCC-CCeEEEechhhcCCCcCccccccccc-
Confidence 57999999998543 234567788999999998888777642 232 48999999765432 22122233222
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeeCcccCCC
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPW 304 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~G~~ 304 (476)
..+...|+.+|++.+.++++++++ .|+.++++.||.|..+.
T Consensus 169 ~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~ 214 (313)
T PRK05854 169 YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNL 214 (313)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCc
Confidence 256678999999999999998764 37999999999997653
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-18 Score=168.13 Aligned_cols=200 Identities=18% Similarity=0.074 Sum_probs=146.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++||||||+|+||+++++.|+++|++|++++|+.+. .+..... ...+.++.+|++|++++.++++.+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~----~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEAL----AKETAAE---LGLVVGGPLDVTDPASFAAFLDAVEAD 75 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHH---hccceEEEccCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999984321 1111111 115888999999999988777643
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... ....+..+..+++|+.++..+++.+ ++.+.. +||++||.+.+...
T Consensus 76 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~---------- 144 (273)
T PRK07825 76 LGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRG-HVVNVASLAGKIPV---------- 144 (273)
T ss_pred cCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEcCccccCCC----------
Confidence 57999999997432 1223345678999999988877765 345554 89999998754322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+.+.+..+ .|+++++|+||.+.++... +.+ ......+
T Consensus 145 --~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~--------------~~~---------~~~~~~~ 199 (273)
T PRK07825 145 --PGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA--------------GTG---------GAKGFKN 199 (273)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc--------------ccc---------cccCCCC
Confidence 45678999999999887777655 4899999999998655211 100 0112246
Q ss_pred eeHHHHHHHHHHHHhhcCc
Q 011841 340 TYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~ 358 (476)
+.++|+|+.++.++.++..
T Consensus 200 ~~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 200 VEPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred CCHHHHHHHHHHHHhCCCC
Confidence 8899999999999987543
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-18 Score=169.53 Aligned_cols=208 Identities=16% Similarity=0.047 Sum_probs=147.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
|+|+||||+|+||.+++++|+++|++|++++|..+..+....... .....+.++.+|++|++++.++++.+ +
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 77 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLR---EAGGDGFYQRCDVRDYSQLTALAQACEEKWGG 77 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999985432222111111 11346888999999999988877642 5
Q ss_pred ccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
+|+||||||.... ....++.+..+++|+.++..+++. +++.+.. +||++||...+.+. .
T Consensus 78 id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~vsS~~~~~~~------------~ 144 (270)
T PRK05650 78 IDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSG-RIVNIASMAGLMQG------------P 144 (270)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC-EEEEECChhhcCCC------------C
Confidence 7999999997543 122334556788998888776665 4555554 99999998765432 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCC-cHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
....|+.+|.+.+.+.+.++.++ |+++++++||.+.++...... ........+. . .....+++
T Consensus 145 ~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~ 211 (270)
T PRK05650 145 AMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFRGPNPAMKAQVG-K------------LLEKSPIT 211 (270)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccccCchhHHHHHH-H------------HhhcCCCC
Confidence 45789999999999988888764 899999999999887432110 0011111100 0 00123578
Q ss_pred HHHHHHHHHHHHhh
Q 011841 342 IDDVVKGCVGALDT 355 (476)
Q Consensus 342 v~Dva~a~~~~l~~ 355 (476)
++|+|+.++.++++
T Consensus 212 ~~~vA~~i~~~l~~ 225 (270)
T PRK05650 212 AADIADYIYQQVAK 225 (270)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999985
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-18 Score=170.89 Aligned_cols=216 Identities=17% Similarity=0.137 Sum_probs=152.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++||||||+|+||.++++.|+++|++|++++|+.+. .............+..+.+|++|.++++++++.+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAE----LAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999985432 1222222222335667779999999988887643
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... +...++.+..+++|+.++.++++.+...- ...+||++||...+...
T Consensus 83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 150 (296)
T PRK05872 83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAA------------ 150 (296)
T ss_pred cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCC------------
Confidence 68999999997432 22334556789999999999998875321 12489999998766432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.....|+.+|.+.+.+++.+..+ .|+.+++++||.+..+..............+....+.+ ...++.
T Consensus 151 ~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~~~~~~p----------~~~~~~ 220 (296)
T PRK05872 151 PGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDADADLPAFRELRARLPWP----------LRRTTS 220 (296)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhccccchhHHHHHhhCCCc----------ccCCCC
Confidence 34568999999999999988754 48999999999998764321100001112222111111 123578
Q ss_pred HHHHHHHHHHHHhhcC
Q 011841 342 IDDVVKGCVGALDTAG 357 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~ 357 (476)
++|++++++.++....
T Consensus 221 ~~~va~~i~~~~~~~~ 236 (296)
T PRK05872 221 VEKCAAAFVDGIERRA 236 (296)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999987643
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-18 Score=166.00 Aligned_cols=225 Identities=15% Similarity=0.102 Sum_probs=159.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+++++||||+|+||.+++++|+++|++|++++|..+..++ ....... ..++.++.+|++|.++++++++..
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~----~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDK----GLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEK 83 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH----HHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999886542221 1111111 236889999999999999888752
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccc-cCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSV-YGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~v-yg~~~~~~~~E~ 260 (476)
++|+||||||.... +...++.+..+++|+.++..+++.+. +.+. .+||++||... ++.
T Consensus 84 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 153 (265)
T PRK07097 84 EVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGH-GKIINICSMMSELGR--------- 153 (265)
T ss_pred hCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-cEEEEEcCccccCCC---------
Confidence 57999999998543 23445667789999999888877754 3443 48999999643 321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc------HHHHHHHHHcCCceEEEeeCC
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA------YFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~ 331 (476)
.+...|+.+|.+.+.+++.+++++ |++++.|+||.+.++....... ...+...+....+
T Consensus 154 ----~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 221 (265)
T PRK07097 154 ----ETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRELQADGSRHPFDQFIIAKTP-------- 221 (265)
T ss_pred ----CCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhhccccccchhHHHHHHhcCC--------
Confidence 345779999999999999998875 8999999999999874321100 0011111221111
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
...+..++|+|+.++.++..... .+| +++.+.++.
T Consensus 222 ----~~~~~~~~dva~~~~~l~~~~~~~~~g-----------~~~~~~gg~ 257 (265)
T PRK07097 222 ----AARWGDPEDLAGPAVFLASDASNFVNG-----------HILYVDGGI 257 (265)
T ss_pred ----ccCCcCHHHHHHHHHHHhCcccCCCCC-----------CEEEECCCc
Confidence 12356789999999999886432 232 677777654
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=173.92 Aligned_cols=208 Identities=17% Similarity=0.112 Sum_probs=148.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++|+||||+|+||.+++++|+++|++|++++|+.+..++...... ....++.++.+|++|.++++++++.+
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~---~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR---AAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---HcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999996432222111111 11346888999999999999887643
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... +...++.+..+++|+.++..+++. +++.+. .+||++||...|...
T Consensus 83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~-g~iV~isS~~~~~~~---------- 151 (334)
T PRK07109 83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDR-GAIIQVGSALAYRSI---------- 151 (334)
T ss_pred CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEeCChhhccCC----------
Confidence 67999999997432 233455567888998887765554 444444 389999999877432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
+....|+.+|.+.+.+++.++.+. ++++++|+||.|.+|... .. ....... .....
T Consensus 152 --~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~------~~-~~~~~~~----------~~~~~ 212 (334)
T PRK07109 152 --PLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFD------WA-RSRLPVE----------PQPVP 212 (334)
T ss_pred --CcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhh------hh-hhhcccc----------ccCCC
Confidence 345789999999999988876553 699999999999876211 11 1111110 11122
Q ss_pred eceeHHHHHHHHHHHHhhc
Q 011841 338 DFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~ 356 (476)
.+..++|+|++++.++.++
T Consensus 213 ~~~~pe~vA~~i~~~~~~~ 231 (334)
T PRK07109 213 PIYQPEVVADAILYAAEHP 231 (334)
T ss_pred CCCCHHHHHHHHHHHHhCC
Confidence 4578999999999999876
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=165.73 Aligned_cols=227 Identities=15% Similarity=0.108 Sum_probs=160.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++|+||||+|+||.+++++|+++|++|++++|+.+...+...... ....++.++.+|++|.+++.++++.+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIR---EAGGEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---hcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999996542222111111 11346889999999999988887754
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... +...++++..+++|+.++..+++++ .+.+. .++|++||...+.+.
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~sS~~~~~~~--------- 151 (253)
T PRK06172 82 YGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGG-GAIVNTASVAGLGAA--------- 151 (253)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEECchhhccCC---------
Confidence 67999999997421 2244566778999999998777654 33443 389999998876532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc-HHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA-YFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.+.+++.++.++ |+++++++||.|-.+....... .......+....+ ..
T Consensus 152 ---~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~------------~~ 216 (253)
T PRK06172 152 ---PKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHP------------VG 216 (253)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccCC------------CC
Confidence 345789999999999999998775 7999999999997764221000 0111111211111 12
Q ss_pred eceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 338 DFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+..++|+++.++.++.... ..+| +++++.++.
T Consensus 217 ~~~~p~~ia~~~~~l~~~~~~~~~G-----------~~i~~dgg~ 250 (253)
T PRK06172 217 RIGKVEEVASAVLYLCSDGASFTTG-----------HALMVDGGA 250 (253)
T ss_pred CccCHHHHHHHHHHHhCccccCcCC-----------cEEEECCCc
Confidence 35678999999999887643 2233 788887764
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-18 Score=164.98 Aligned_cols=215 Identities=13% Similarity=0.082 Sum_probs=149.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++++++||||+|+||.++++.|+++|+.|+++.|.... .......... ...++.++.+|++|.+++.++++..
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~---~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEE---EANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999998885421 1111111111 1346788999999999988877643
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLE----VCKSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~----~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ....++.+..+++|+.++..+++ .+++.+...+||++||...+..
T Consensus 82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~---------- 151 (261)
T PRK08936 82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIP---------- 151 (261)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCC----------
Confidence 67999999997443 22334566789999888766554 4455554458999999654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
..+...|+.+|.+.+.+.+.++.++ |+++++|+||.|.++........+.....+....+. ..
T Consensus 152 --~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~~ 217 (261)
T PRK08936 152 --WPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKFADPKQRADVESMIPM------------GY 217 (261)
T ss_pred --CCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcCCC------------CC
Confidence 1456789999999999888887654 899999999999888533221111222222222111 23
Q ss_pred ceeHHHHHHHHHHHHhhcC
Q 011841 339 FTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~ 357 (476)
+..++|+++.++.++....
T Consensus 218 ~~~~~~va~~~~~l~s~~~ 236 (261)
T PRK08936 218 IGKPEEIAAVAAWLASSEA 236 (261)
T ss_pred CcCHHHHHHHHHHHcCccc
Confidence 6678999999999887543
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-18 Score=164.30 Aligned_cols=213 Identities=13% Similarity=0.110 Sum_probs=151.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++++||||+|+||.+++++|+++|++|+++++... ....+... . ....+..+.+|++|.+++.++++..
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~-~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVT-A--LGRRFLSLTADLRKIDGIPALLERAVAE 82 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHH-h--cCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999998876421 11111111 1 1336788999999999999888753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +...++.+..+++|+.++..+++++.. .+..+++|++||...+.+.
T Consensus 83 ~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 152 (253)
T PRK08993 83 FGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG---------- 152 (253)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC----------
Confidence 68999999997432 234456778999999999999887643 2322489999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.....|+.+|.+.+.+++.++.+ .|++++.++||.+..+....-.........+.+.-+ ...+
T Consensus 153 --~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~~p------------~~r~ 218 (253)
T PRK08993 153 --IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIP------------AGRW 218 (253)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhcCC------------CCCC
Confidence 23357999999999999988776 489999999999987632210000111112221111 1126
Q ss_pred eeHHHHHHHHHHHHhhcC
Q 011841 340 TYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~ 357 (476)
..++|+|+.++.++....
T Consensus 219 ~~p~eva~~~~~l~s~~~ 236 (253)
T PRK08993 219 GLPSDLMGPVVFLASSAS 236 (253)
T ss_pred cCHHHHHHHHHHHhCccc
Confidence 678999999999987643
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.1e-18 Score=162.71 Aligned_cols=222 Identities=15% Similarity=0.051 Sum_probs=154.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++||||||+|+||+++++.|+++|+.|++.+|..+. ........ ..++.++.+|++|.+++.++++..
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~----~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEK----LEALAAEL--GERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHH----HHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999888874321 11111111 236889999999999988877542
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++..+++++.+ .+. ++||++||...+.+.
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~---------- 146 (245)
T PRK12936 78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRY-GRIINITSVVGVTGN---------- 146 (245)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC-CEEEEECCHHhCcCC----------
Confidence 57999999997432 223455677899999999998887642 343 389999997543221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.....|+.+|.+.+.+++.++.+ .|+++++++||.+..+...... ........... ....+
T Consensus 147 --~~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~~~--~~~~~~~~~~~------------~~~~~ 210 (245)
T PRK12936 147 --PGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLN--DKQKEAIMGAI------------PMKRM 210 (245)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcccC--hHHHHHHhcCC------------CCCCC
Confidence 23456999999999888877655 3799999999998765332110 11111111111 11235
Q ss_pred eeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCC
Q 011841 340 TYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..++|++++++.++...... .| +++++.++.
T Consensus 211 ~~~~~ia~~~~~l~~~~~~~~~G-----------~~~~~~~g~ 242 (245)
T PRK12936 211 GTGAEVASAVAYLASSEAAYVTG-----------QTIHVNGGM 242 (245)
T ss_pred cCHHHHHHHHHHHcCccccCcCC-----------CEEEECCCc
Confidence 67999999999888654322 22 889988763
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-18 Score=163.92 Aligned_cols=227 Identities=17% Similarity=0.120 Sum_probs=157.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++++||||+|+||+++++.|+++|++|++++|... ..+...... ....++.++.+|++|++++.++++..
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~---~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELC---GRGHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHH---HhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998542 111111111 11346788999999999998887753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....+..+..+++|+.++..+++++.. .+. ++||++||......
T Consensus 80 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~~----------- 147 (263)
T PRK08226 80 EGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKD-GRIVMMSSVTGDMV----------- 147 (263)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEECcHHhccc-----------
Confidence 67999999997433 222344556799999999999988653 333 38999998653110
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC------CCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP------DMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.......|+.+|.+.|.+++.++.++ |++++.|+||.+.++.... ......+...+.++.++
T Consensus 148 ~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~--------- 218 (263)
T PRK08226 148 ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPL--------- 218 (263)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCCC---------
Confidence 11345679999999999999988765 7999999999998873210 00112233444433222
Q ss_pred ceeEeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 334 EVARDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++... ....| +++-+.++.
T Consensus 219 ---~~~~~~~~va~~~~~l~~~~~~~~~g-----------~~i~~dgg~ 253 (263)
T PRK08226 219 ---RRLADPLEVGELAAFLASDESSYLTG-----------TQNVIDGGS 253 (263)
T ss_pred ---CCCCCHHHHHHHHHHHcCchhcCCcC-----------ceEeECCCc
Confidence 12567899999998887543 22232 677776653
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-18 Score=162.73 Aligned_cols=223 Identities=15% Similarity=0.076 Sum_probs=153.9
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC---
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
++|+|+||||+|+||++++++|+++|++|++..+.... .......... ....+..+.+|+.|.+++.++++.+
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 78 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSP---RRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAE 78 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChH---HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999886542211 1111111111 1335778899999999988887643
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +.+.++.+..+++|+.++..+++++ ++.+.. +||++||......
T Consensus 79 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~----------- 146 (246)
T PRK12938 79 VGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWG-RIINISSVNGQKG----------- 146 (246)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe-EEEEEechhccCC-----------
Confidence 57999999997432 3344566788999999977766654 445544 8999999754211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
..+...|+.+|.+.+.+++.+.++ .|+++++|+||.+.+|.... ..+.+...+....+. ..+
T Consensus 147 -~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~--~~~~~~~~~~~~~~~------------~~~ 211 (246)
T PRK12938 147 -QFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA--IRPDVLEKIVATIPV------------RRL 211 (246)
T ss_pred -CCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhh--cChHHHHHHHhcCCc------------cCC
Confidence 134578999999999988887765 47999999999998874321 112233333322221 234
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
..++|++.+++.++..+.. ..| +++.+.++
T Consensus 212 ~~~~~v~~~~~~l~~~~~~~~~g-----------~~~~~~~g 242 (246)
T PRK12938 212 GSPDEIGSIVAWLASEESGFSTG-----------ADFSLNGG 242 (246)
T ss_pred cCHHHHHHHHHHHcCcccCCccC-----------cEEEECCc
Confidence 5689999999988865432 232 77777664
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=167.47 Aligned_cols=205 Identities=20% Similarity=0.115 Sum_probs=145.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc------C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV------V 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~------~ 192 (476)
++|+||||+|+||.++++.|+++|++|++++|+.+.. + .....+++.+.+|+.|.+++.++++. .
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~----~-----~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 73 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDV----A-----RMNSLGFTGILLDLDDPESVERAADEVIALTDN 73 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHh----H-----HHHhCCCeEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999999854321 1 11123688899999999887776653 2
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHH----HHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNL----LEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~l----l~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|.+||++|.... ....++.+..++.|+.|+.++ ++.+++.+.. ++|++||...+...
T Consensus 74 ~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~iv~~ss~~~~~~~------------ 140 (256)
T PRK08017 74 RLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEG-RIVMTSSVMGLIST------------ 140 (256)
T ss_pred CCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCC-EEEEEcCcccccCC------------
Confidence 57999999996432 123345567899999998776 5556666664 89999997543211
Q ss_pred CCCChHHHHHHHHHHHHHHHHH---HhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCC-ceEEEeeCCCCceeEece
Q 011841 265 QPASLYAATKKAGEEIAHTYNH---IYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK-TIDVYKTQDDREVARDFT 340 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~---~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v 340 (476)
.....|+.+|.+.|.+.+.+.. ..+++++++|||.+..+... .+..+. ..... ..+...+.++
T Consensus 141 ~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~----------~~~~~~~~~~~~---~~~~~~~~~~ 207 (256)
T PRK08017 141 PGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTD----------NVNQTQSDKPVE---NPGIAARFTL 207 (256)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchhh----------cccchhhccchh---hhHHHhhcCC
Confidence 3457899999999998876543 35899999999988655211 111111 11111 1123335689
Q ss_pred eHHHHHHHHHHHHhhcCc
Q 011841 341 YIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~ 358 (476)
+++|+++++..++++...
T Consensus 208 ~~~d~a~~~~~~~~~~~~ 225 (256)
T PRK08017 208 GPEAVVPKLRHALESPKP 225 (256)
T ss_pred CHHHHHHHHHHHHhCCCC
Confidence 999999999999977654
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-18 Score=162.21 Aligned_cols=209 Identities=13% Similarity=0.041 Sum_probs=147.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
.++|+||||||+|+||+++++.|+++|++|+++.|... +..+... ...++.++.+|++|.+++.++++.. ++
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~---~~~~~l~----~~~~~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSK---DAAERLA----QETGATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCH---HHHHHHH----HHhCCeEEecCCCCHHHHHHHHHHhCCC
Confidence 45789999999999999999999999999998876332 1111111 1225678899999999888887653 57
Q ss_pred cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCCCCCCCCCCCCCCCCCCCh
Q 011841 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASL 269 (476)
Q Consensus 195 d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~ 269 (476)
|+||||||.... +...++.+..+++|+.++..++..+... ....++|++||...... +..+...
T Consensus 77 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~-----------~~~~~~~ 145 (237)
T PRK12742 77 DILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRM-----------PVAGMAA 145 (237)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccC-----------CCCCCcc
Confidence 999999997432 2334566789999999999998665543 22248999999653110 1145678
Q ss_pred HHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHH
Q 011841 270 YAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346 (476)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (476)
|+.+|.+.|.+++.++.++ |+++++|+||.+..+....... +...+....+. ..+..++|++
T Consensus 146 Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~~~---~~~~~~~~~~~------------~~~~~p~~~a 210 (237)
T PRK12742 146 YAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGP---MKDMMHSFMAI------------KRHGRPEEVA 210 (237)
T ss_pred hHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccccH---HHHHHHhcCCC------------CCCCCHHHHH
Confidence 9999999999999887654 7999999999998774322111 11112111111 1256789999
Q ss_pred HHHHHHHhhcC
Q 011841 347 KGCVGALDTAG 357 (476)
Q Consensus 347 ~a~~~~l~~~~ 357 (476)
+++..++....
T Consensus 211 ~~~~~l~s~~~ 221 (237)
T PRK12742 211 GMVAWLAGPEA 221 (237)
T ss_pred HHHHHHcCccc
Confidence 99998886543
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-18 Score=161.65 Aligned_cols=215 Identities=18% Similarity=0.162 Sum_probs=154.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
.++|+++||||+|+||+++++.|+++|++|++++|..... ...++.++.+|++|+ ++++++.. ++
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~------------~~~~~~~~~~D~~~~--~~~~~~~~~~i 68 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD------------LSGNFHFLQLDLSDD--LEPLFDWVPSV 68 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc------------cCCcEEEEECChHHH--HHHHHHhhCCC
Confidence 4568999999999999999999999999999999854311 123688999999987 44444432 56
Q ss_pred cEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 195 d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
|+||||||... .+...++.+..+++|+.++.++++++.. .+. ++||++||...+... .
T Consensus 69 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~------------~ 135 (235)
T PRK06550 69 DILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKS-GIIINMCSIASFVAG------------G 135 (235)
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcChhhccCC------------C
Confidence 99999999632 1334456678899999999999988753 333 489999998754321 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
....|+.+|.+.+.+++.++.++ |+++++++||.|.++....+.....+...+.+..+ ...+...
T Consensus 136 ~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 203 (235)
T PRK06550 136 GGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARETP------------IKRWAEP 203 (235)
T ss_pred CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCcccccccCchHHHHHHhccCC------------cCCCCCH
Confidence 34679999999999999888765 89999999999988854322211122222222221 1236778
Q ss_pred HHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 343 DDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
+|+|++++.++.+.. ...| .++.+.++
T Consensus 204 ~~~a~~~~~l~s~~~~~~~g-----------~~~~~~gg 231 (235)
T PRK06550 204 EEVAELTLFLASGKADYMQG-----------TIVPIDGG 231 (235)
T ss_pred HHHHHHHHHHcChhhccCCC-----------cEEEECCc
Confidence 999999999986543 2222 67777665
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.1e-18 Score=166.74 Aligned_cols=164 Identities=17% Similarity=0.163 Sum_probs=127.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
|+||||||+|+||+++++.|+++|++|++++|+... .. .....+++++.+|++|.++++++++.+ +
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~----~~-----~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 72 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAED----VE-----ALAAAGFTAVQLDVNDGAALARLAEELEAEHGG 72 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HH-----HHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 689999999999999999999999999999985321 11 111236788999999999998887654 6
Q ss_pred ccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS---VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~---~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
+|+||||||.... +...++.+..+++|+.++.++++++.. .+. .++|++||...+... ..
T Consensus 73 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~------------~~ 139 (274)
T PRK05693 73 LDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSR-GLVVNIGSVSGVLVT------------PF 139 (274)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CEEEEECCccccCCC------------CC
Confidence 8999999997432 223455677899999999999988643 232 389999997643221 34
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCC
Q 011841 267 ASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPW 304 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~ 304 (476)
...|+.+|.+.+.+++.++.+ +|+++++++||.|.++.
T Consensus 140 ~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~ 180 (274)
T PRK05693 140 AGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF 180 (274)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence 567999999999998887765 58999999999998763
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.5e-18 Score=165.94 Aligned_cols=227 Identities=12% Similarity=0.071 Sum_probs=152.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+++||++++++|+++|++|+++.|.... .......... ....+.++.+|++|+++++++++..
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVE---EANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID 82 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999988764321 1111111111 1346889999999999998888753
Q ss_pred ----CccEEEEccccCCh----------hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQ 254 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----------~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~ 254 (476)
++|+||||||.... +...++....+++|+.+...+.+.+. +.+. ++||++||...+...
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-- 159 (260)
T PRK08416 83 EDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGG-GSIISLSSTGNLVYI-- 159 (260)
T ss_pred HhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCC-EEEEEEeccccccCC--
Confidence 57999999985321 11234455678888888777666543 3333 389999997533111
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCC
Q 011841 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (476)
+....|+.+|.+.+.+++.++.++ |+++++|+||.+-.+....-.....+...+....+.
T Consensus 160 ----------~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~------- 222 (260)
T PRK08416 160 ----------ENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELSPL------- 222 (260)
T ss_pred ----------CCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcCCC-------
Confidence 234579999999999999998875 899999999998765311100001122222222211
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++..... .+| +++.+.++.
T Consensus 223 -----~r~~~p~~va~~~~~l~~~~~~~~~G-----------~~i~vdgg~ 257 (260)
T PRK08416 223 -----NRMGQPEDLAGACLFLCSEKASWLTG-----------QTIVVDGGT 257 (260)
T ss_pred -----CCCCCHHHHHHHHHHHcChhhhcccC-----------cEEEEcCCe
Confidence 1256789999999998865432 232 777776653
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-18 Score=164.82 Aligned_cols=200 Identities=16% Similarity=0.066 Sum_probs=145.9
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--Ccc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFT 195 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--~~d 195 (476)
+|+|+||||+|+||.+++++|+++|++|++++|+.+..+...+... .....+++++++|++|+++++++++.+ ++|
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLR--ARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHH--HhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 3689999999999999999999999999999996542221111111 112347899999999999999888754 579
Q ss_pred EEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCCCCCCC
Q 011841 196 HVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (476)
Q Consensus 196 ~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (476)
+|||++|.... ....++....+++|+.++..+++++.. .+. ++||++||....... ...
T Consensus 79 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~------------~~~ 145 (243)
T PRK07102 79 IVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGS-GTIVGISSVAGDRGR------------ASN 145 (243)
T ss_pred EEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC-CEEEEEecccccCCC------------CCC
Confidence 99999987432 223344557889999999999887653 344 489999997532111 234
Q ss_pred ChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHH
Q 011841 268 SLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (476)
..|+.+|.+.+.+++.++.+ .|+++++++||.++++.... .. .. + ...+.++|
T Consensus 146 ~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~~~~~--------------~~--~~-----~---~~~~~~~~ 201 (243)
T PRK07102 146 YVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTPMTAG--------------LK--LP-----G---PLTAQPEE 201 (243)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccChhhhc--------------cC--CC-----c---cccCCHHH
Confidence 57999999999999988654 48999999999999872211 00 00 0 12467899
Q ss_pred HHHHHHHHHhhc
Q 011841 345 VVKGCVGALDTA 356 (476)
Q Consensus 345 va~a~~~~l~~~ 356 (476)
+++.++.+++..
T Consensus 202 ~a~~i~~~~~~~ 213 (243)
T PRK07102 202 VAKDIFRAIEKG 213 (243)
T ss_pred HHHHHHHHHhCC
Confidence 999999999854
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-18 Score=163.23 Aligned_cols=225 Identities=14% Similarity=0.080 Sum_probs=157.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEE-eCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~-~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..+++||||||+|+||.++++.|+++|++|+++ +|..+... ....... ...++.++.+|++|++++.++++..
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQ----ELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIV 78 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHH----HHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999999999999 87543211 1111111 1346889999999999998887643
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+|||++|.... ....++.+..+++|+.++.++++.+.. .+. ++||++||...+.+.
T Consensus 79 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~v~~sS~~~~~~~-------- 149 (247)
T PRK05565 79 EKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKS-GVIVNISSIWGLIGA-------- 149 (247)
T ss_pred HHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEECCHhhccCC--------
Confidence 57999999997532 223345667899999998888887653 333 379999997654322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.....|+.+|.+.+.+++.+..+. |++++++|||.+.++....-. ......+... . ...
T Consensus 150 ----~~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~~--~~~~~~~~~~-----~-------~~~ 211 (247)
T PRK05565 150 ----SCEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSFS--EEDKEGLAEE-----I-------PLG 211 (247)
T ss_pred ----CCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCccccccC--hHHHHHHHhc-----C-------CCC
Confidence 234579999999999888877654 899999999999776433211 1111111111 1 112
Q ss_pred eceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+..++|+++.++.++......- .| +++++.++.
T Consensus 212 ~~~~~~~va~~~~~l~~~~~~~~--~g--------~~~~~~~~~ 245 (247)
T PRK05565 212 RLGKPEEIAKVVLFLASDDASYI--TG--------QIITVDGGW 245 (247)
T ss_pred CCCCHHHHHHHHHHHcCCccCCc--cC--------cEEEecCCc
Confidence 36788999999999997754321 22 888887753
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.7e-18 Score=165.57 Aligned_cols=214 Identities=15% Similarity=0.141 Sum_probs=149.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++++||||||+|+||.+++++|+++|++|++++|+.+.. ........ ...++.++.+|++|++++.++++.+
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~ 82 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKV----DAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIAD 82 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999864321 11111111 1236788999999999998888764
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~--~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... +...++.+..+++|+.++.++++++... ....+||++||...+..
T Consensus 83 ~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~------------ 150 (264)
T PRK07576 83 EFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVP------------ 150 (264)
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccC------------
Confidence 57999999985321 2234456678899999999999887542 11248999999765421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc-HHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA-YFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
......|+.+|.+.|.+++.++.++ |+++++++||.+.+........ -..+...+... . ....+
T Consensus 151 ~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~~~~~~~~~~~~~~~--~----------~~~~~ 218 (264)
T PRK07576 151 MPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMARLAPSPELQAAVAQS--V----------PLKRN 218 (264)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhhcccCHHHHHHHHhc--C----------CCCCC
Confidence 1456789999999999999987664 7999999999987532110000 00111111111 1 11235
Q ss_pred eeHHHHHHHHHHHHhhcC
Q 011841 340 TYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~ 357 (476)
..++|+|++++.++..+.
T Consensus 219 ~~~~dva~~~~~l~~~~~ 236 (264)
T PRK07576 219 GTKQDIANAALFLASDMA 236 (264)
T ss_pred CCHHHHHHHHHHHcChhh
Confidence 678999999999997643
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-18 Score=160.29 Aligned_cols=216 Identities=13% Similarity=0.075 Sum_probs=152.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~----- 192 (476)
+|++|||||+|+||++++++|+++|++|++++|+.+.. .. .....+++++.+|++|.++++++++..
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 73 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPA---ID-----GLRQAGAQCIQADFSTNAGIMAFIDELKQHTD 73 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhH---HH-----HHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCC
Confidence 47899999999999999999999999999999865321 11 111225788999999999988887653
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCC-CCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNP-QPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|++|||||.... ....++.+..+++|+.++..+.+.+.. .+. ..++|++||.....+.
T Consensus 74 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~----------- 142 (236)
T PRK06483 74 GLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGS----------- 142 (236)
T ss_pred CccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCC-----------
Confidence 48999999997432 123455678899999998887776543 221 2389999986543111
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.....|+.+|.+.|.+++.++.++ ++++++|+||.+..+.... ...........++. .+..
T Consensus 143 -~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~ 205 (236)
T PRK06483 143 -DKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGDD----AAYRQKALAKSLLK------------IEPG 205 (236)
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCCC----HHHHHHHhccCccc------------cCCC
Confidence 345679999999999999999886 5999999999985432211 11222222222221 1345
Q ss_pred HHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 342 IDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
++|+++++..++.. ...+| +++.+.++.
T Consensus 206 ~~~va~~~~~l~~~-~~~~G-----------~~i~vdgg~ 233 (236)
T PRK06483 206 EEEIIDLVDYLLTS-CYVTG-----------RSLPVDGGR 233 (236)
T ss_pred HHHHHHHHHHHhcC-CCcCC-----------cEEEeCccc
Confidence 79999999999963 33333 778777654
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.9e-18 Score=161.51 Aligned_cols=196 Identities=18% Similarity=0.116 Sum_probs=144.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--CccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--~~d~ 196 (476)
++|+||||+|+||.+++++|+++|++|++++|+.+. .+.... ...++.++.+|++|.++++++++.. .+|.
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~----~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~ 74 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSV----LDELHT---QSANIFTLAFDVTDHPGTKAALSQLPFIPEL 74 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHH----HHHHHH---hcCCCeEEEeeCCCHHHHHHHHHhcccCCCE
Confidence 689999999999999999999999999999995321 111111 1236889999999999999998864 4799
Q ss_pred EEEccccCCh-h---hhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHH
Q 011841 197 VLHLAAQAGV-R---YAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYA 271 (476)
Q Consensus 197 Vi~~Ag~~~~-~---~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (476)
+|||||.... + ...++.+..+++|+.++.++++++...- ...++|++||....-+ ......|+
T Consensus 75 ~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~------------~~~~~~Y~ 142 (240)
T PRK06101 75 WIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELA------------LPRAEAYG 142 (240)
T ss_pred EEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccC------------CCCCchhh
Confidence 9999986321 1 1233456789999999999999887531 1237999988653211 13456799
Q ss_pred HHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHH
Q 011841 272 ATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a 348 (476)
.+|.+.+.+++.++.+ +|++++++|||.++++...... ... . ..+..+|+|+.
T Consensus 143 asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~~------------~~~--------~----~~~~~~~~a~~ 198 (240)
T PRK06101 143 ASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKNT------------FAM--------P----MIITVEQASQE 198 (240)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCCC------------CCC--------C----cccCHHHHHHH
Confidence 9999999999988744 4899999999999987433210 000 0 13678999999
Q ss_pred HHHHHhhcC
Q 011841 349 CVGALDTAG 357 (476)
Q Consensus 349 ~~~~l~~~~ 357 (476)
++..++...
T Consensus 199 i~~~i~~~~ 207 (240)
T PRK06101 199 IRAQLARGK 207 (240)
T ss_pred HHHHHhcCC
Confidence 999998743
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-18 Score=162.70 Aligned_cols=224 Identities=16% Similarity=0.101 Sum_probs=156.0
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+++||||+ +.||..++++|+++|++|++.+|+.. ......+. ....+.++.+|++|+++++++++..
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~-----~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~ 78 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDR-----MKKSLQKL-VDEEDLLVECDVASDESIERAFATIK 78 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchH-----HHHHHHhh-ccCceeEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999 79999999999999999999988521 11111111 2346889999999999988877643
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|++|||||.... +.+.++.+..+++|+.++..+++++...- ...++|++||.+.....
T Consensus 79 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~------- 151 (252)
T PRK06079 79 ERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERAI------- 151 (252)
T ss_pred HHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccccC-------
Confidence 58999999997431 22344566789999999998888765422 12489999986642111
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.....|+.+|.+.+.+++.++.++ |+++++|.||.|-.+..........+.+.+.+..+.
T Consensus 152 -----~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 214 (252)
T PRK06079 152 -----PNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTVD------------ 214 (252)
T ss_pred -----CcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCcc------------
Confidence 345679999999999999988764 899999999999876321110112223333222111
Q ss_pred EeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
..+..++|+|++++.++.... ..+| +++.+.++
T Consensus 215 ~r~~~pedva~~~~~l~s~~~~~itG-----------~~i~vdgg 248 (252)
T PRK06079 215 GVGVTIEEVGNTAAFLLSDLSTGVTG-----------DIIYVDKG 248 (252)
T ss_pred cCCCCHHHHHHHHHHHhCcccccccc-----------cEEEeCCc
Confidence 126778999999999986542 3333 67766654
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=167.21 Aligned_cols=214 Identities=16% Similarity=0.139 Sum_probs=144.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
+++||||||+|+||+++++.|+++|++|++++|+... ........ ....++.++.+|++|++++.+++++ ++|+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~id~ 76 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQ----VTALRAEAARRGLALRVEKLDLTDAIDRAQAAEW-DVDV 76 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcC-CCCE
Confidence 4689999999999999999999999999999985421 11111111 1123688999999999999988764 5699
Q ss_pred EEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCC
Q 011841 197 VLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (476)
Q Consensus 197 Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (476)
||||||.... ..+.++.+..+++|+.++..+.+. +++.+.+ +||++||...+... ....
T Consensus 77 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~SS~~~~~~~------------~~~~ 143 (257)
T PRK09291 77 LLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKG-KVVFTSSMAGLITG------------PFTG 143 (257)
T ss_pred EEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEEcChhhccCC------------CCcc
Confidence 9999997432 223344567788999987766654 4455654 99999997543211 3456
Q ss_pred hHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcC--CceEEEeeCCCCceeEeceeHH
Q 011841 269 LYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQG--KTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
.|+.+|.+.|.+++.+..+ .|+++++||||.+..+.... ....+. ..... ..+.. .+......+...+
T Consensus 144 ~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~t~~~~~--~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~ 216 (257)
T PRK09291 144 AYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYLTGFNDT--MAETPK-RWYDPARNFTDP----EDLAFPLEQFDPQ 216 (257)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccchhh--hhhhhh-hhcchhhHHHhh----hhhhccccCCCHH
Confidence 8999999999998887654 58999999999875542210 000010 00000 00110 0122234567899
Q ss_pred HHHHHHHHHHhhc
Q 011841 344 DVVKGCVGALDTA 356 (476)
Q Consensus 344 Dva~a~~~~l~~~ 356 (476)
|+++.++.++..+
T Consensus 217 ~~~~~~~~~l~~~ 229 (257)
T PRK09291 217 EMIDAMVEVIPAD 229 (257)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999988654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.5e-18 Score=167.69 Aligned_cols=202 Identities=19% Similarity=0.204 Sum_probs=146.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+++|+||||+|+||.++++.|+++|++|++++|+.+..++ ...... ....+.++.+|++|.+++.++++.+
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~----~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 113 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDA----VADRITRAGGDAMAVPCDLSDLDAVDALVADVEK 113 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH----HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 466899999999999999999999999999999996432221 111111 1235788999999999998888732
Q ss_pred ---CccEEEEccccCChhh------hhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGVRY------AMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~~~------~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||...... ..++.+..+++|+.++.++++++. +.+.. +||++||.+++...
T Consensus 114 ~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~------- 185 (293)
T PRK05866 114 RIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDG-HIINVATWGVLSEA------- 185 (293)
T ss_pred HcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-EEEEECChhhcCCC-------
Confidence 6799999999743311 123445689999999888887653 55554 99999997765321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+....|+.+|.+.+.+++.++.++ |+++++++||.|-++.... . ... .+
T Consensus 186 ----~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~~~~~-------------~---~~~----~~--- 238 (293)
T PRK05866 186 ----SPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATPMIAP-------------T---KAY----DG--- 238 (293)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCccccc-------------c---ccc----cC---
Confidence 1235689999999999998887664 8999999999887663211 0 000 01
Q ss_pred EeceeHHHHHHHHHHHHhhc
Q 011841 337 RDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~ 356 (476)
...+.++|+|+.++.+++..
T Consensus 239 ~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 239 LPALTADEAAEWMVTAARTR 258 (293)
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 12367899999999999863
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=162.98 Aligned_cols=230 Identities=13% Similarity=0.083 Sum_probs=155.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++++||||+|+||.+++++|+++|++|++++|+.+..+........ .....++.++.+|++|.+++.++++.+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLRE-KFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh-hCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999965433222222111 111236888999999999988877643
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++....+++|+.+...+++.+ ++.+. ++||++||...+.+.
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 153 (265)
T PRK07062 85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAA-ASIVCVNSLLALQPE---------- 153 (265)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCC-cEEEEeccccccCCC----------
Confidence 57999999997432 2233455677889988877776654 33443 389999998754321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC--------CCcHHHHHHHHHcCCceEEEeeCC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~ 331 (476)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+.... +..+..+...+.....+
T Consensus 154 --~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 224 (265)
T PRK07062 154 --PHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYEARADPGQSWEAWTAALARKKGI------- 224 (265)
T ss_pred --CCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHHHhhccCCChHHHHHHHhhcCCC-------
Confidence 334679999999999988877664 7999999999997763211 00111111111111111
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
....+..++|+|++++.++.... ..+| +++.+.++
T Consensus 225 ---p~~r~~~p~~va~~~~~L~s~~~~~~tG-----------~~i~vdgg 260 (265)
T PRK07062 225 ---PLGRLGRPDEAARALFFLASPLSSYTTG-----------SHIDVSGG 260 (265)
T ss_pred ---CcCCCCCHHHHHHHHHHHhCchhccccc-----------ceEEEcCc
Confidence 11236678999999999886432 2233 77877765
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-18 Score=164.43 Aligned_cols=212 Identities=12% Similarity=0.060 Sum_probs=151.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+|+|+||||+|+||+++++.|+++|++|++++|+.+.. ....... ....++.++.+|+++.+++.++++..
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~----~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERL----KELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAET 82 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999964322 1111111 11346889999999999998887753
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCC-------CCeEEEecCccccCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNP-------QPSIVWASSSSVYGLNTQ 254 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~-------~~~~V~~SS~~vyg~~~~ 254 (476)
++|+||||||.... +...++++..+++|+.++..+++++.. ... .+++|++||...+...
T Consensus 83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-- 160 (258)
T PRK06949 83 EAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVL-- 160 (258)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCC--
Confidence 57999999996432 122345677899999999999887642 211 2489999998765321
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCC
Q 011841 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++....... ......+.+--+
T Consensus 161 ----------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~~~~~~-~~~~~~~~~~~~-------- 221 (258)
T PRK06949 161 ----------PQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEINHHHWE-TEQGQKLVSMLP-------- 221 (258)
T ss_pred ----------CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcchhccC-hHHHHHHHhcCC--------
Confidence 345689999999999999887663 8999999999999985432111 111111111111
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhc
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
...+...+|++++++.++...
T Consensus 222 ----~~~~~~p~~~~~~~~~l~~~~ 242 (258)
T PRK06949 222 ----RKRVGKPEDLDGLLLLLAADE 242 (258)
T ss_pred ----CCCCcCHHHHHHHHHHHhChh
Confidence 123556799999999988754
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9e-18 Score=162.59 Aligned_cols=201 Identities=17% Similarity=0.084 Sum_probs=141.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCC-CCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc---
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSY-YDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV--- 191 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~-~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--- 191 (476)
++++||||||+|+||.+++++|+++| ++|++++|+.+. .+...++... ....+++++.+|++|.+++.++++.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~--~~~~~v~~~~~D~~~~~~~~~~~~~~~~ 84 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA--AGASSVEVIDFDALDTDSHPKVIDAAFA 84 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh--cCCCceEEEEecCCChHHHHHHHHHHHh
Confidence 56899999999999999999999995 999999997653 2222222211 1123689999999999887666553
Q ss_pred -CCccEEEEccccCChhh-hhcCh---HHHHHHHHHHHHH----HHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 192 -VPFTHVLHLAAQAGVRY-AMQNP---QSYVASNIAGFVN----LLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 192 -~~~d~Vi~~Ag~~~~~~-~~~~~---~~~~~~nv~gt~~----ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
-++|++|||+|...... ...+. .+.+++|+.++.. +++.+++.+.. +||++||...+...
T Consensus 85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~-~iv~isS~~g~~~~---------- 153 (253)
T PRK07904 85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFG-QIIAMSSVAGERVR---------- 153 (253)
T ss_pred cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCc-eEEEEechhhcCCC----------
Confidence 26899999998853311 11122 2468999998776 45566666654 99999997643211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+...+.+.+..+ +|+++++++||.+..+.... . .. . ...
T Consensus 154 --~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~~----------~-~~-----------~---~~~ 206 (253)
T PRK07904 154 --RSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSAH----------A-KE-----------A---PLT 206 (253)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhcc----------C-CC-----------C---CCC
Confidence 34457999999999887776544 58999999999998762210 0 00 0 013
Q ss_pred eeHHHHHHHHHHHHhhcC
Q 011841 340 TYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~ 357 (476)
+..+|+|+.++..+++..
T Consensus 207 ~~~~~~A~~i~~~~~~~~ 224 (253)
T PRK07904 207 VDKEDVAKLAVTAVAKGK 224 (253)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 678999999999998643
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-18 Score=163.25 Aligned_cols=201 Identities=13% Similarity=0.073 Sum_probs=145.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~----- 192 (476)
+++|+||||+|+||.+++++|+++|++|++++|+............ .......++++.+|++|.+++.++++..
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELL-ARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH-hhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999996432211111111 1112347889999999999988877643
Q ss_pred CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||..... ...+..+..+++|+.++..+++++. +.+.. +||++||...+.+. +
T Consensus 81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~----------~- 148 (248)
T PRK08251 81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSG-HLVLISSVSAVRGL----------P- 148 (248)
T ss_pred CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-eEEEEeccccccCC----------C-
Confidence 579999999974331 1233445688999999998888764 44544 89999996643221 0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.+...|+.+|.+.+.+++.+..++ ++++++++||++.++.... . +. ....+.
T Consensus 149 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~----------~--~~-------------~~~~~~ 203 (248)
T PRK08251 149 GVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK----------A--KS-------------TPFMVD 203 (248)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc----------c--cc-------------CCccCC
Confidence 235679999999999998888664 6999999999998763211 0 00 012467
Q ss_pred HHHHHHHHHHHHhhc
Q 011841 342 IDDVVKGCVGALDTA 356 (476)
Q Consensus 342 v~Dva~a~~~~l~~~ 356 (476)
.+|.|+.++.+++..
T Consensus 204 ~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 204 TETGVKALVKAIEKE 218 (248)
T ss_pred HHHHHHHHHHHHhcC
Confidence 899999999999753
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-18 Score=170.73 Aligned_cols=209 Identities=15% Similarity=0.149 Sum_probs=150.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++|+||||+|+||+++++.|+++|++|++++|+.+..++....... ....+.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~---~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA---LGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999965432221111111 1336788999999999999887642
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... +...++.+..+++|+.++.++++++ ++.+. .+||++||...+...
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~-g~iV~isS~~~~~~~---------- 150 (330)
T PRK06139 82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGH-GIFINMISLGGFAAQ---------- 150 (330)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCC-CEEEEEcChhhcCCC----------
Confidence 67999999997433 2233445678999999998887775 34443 389999998765322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
+....|+.+|.+.+.+.+.+..+ .|++++.|+||.|.+|....... . .+... .....
T Consensus 151 --p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~-------~-~~~~~---------~~~~~ 211 (330)
T PRK06139 151 --PYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGAN-------Y-TGRRL---------TPPPP 211 (330)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccccc-------c-ccccc---------cCCCC
Confidence 34568999999988888887765 27999999999999884321100 0 01100 11123
Q ss_pred ceeHHHHHHHHHHHHhhcC
Q 011841 339 FTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~ 357 (476)
+..++|+|++++.+++.+.
T Consensus 212 ~~~pe~vA~~il~~~~~~~ 230 (330)
T PRK06139 212 VYDPRRVAKAVVRLADRPR 230 (330)
T ss_pred CCCHHHHHHHHHHHHhCCC
Confidence 5789999999999998754
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.1e-18 Score=162.31 Aligned_cols=212 Identities=16% Similarity=0.106 Sum_probs=144.1
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
+|+||||||+|+||..+++.|+++|++|+++++.+.. .......... ...++.++.+|++|.+++.++++..
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAA---AAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAF 78 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999999887653321 1111111111 1236889999999999988877643
Q ss_pred -CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH-hcCC-----CCeEEEecCccc-cCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK-SVNP-----QPSIVWASSSSV-YGLNTQVPFSE 259 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~-~~~~-----~~~~V~~SS~~v-yg~~~~~~~~E 259 (476)
++|+||||||.... +...++.+..+++|+.++..+++.+. .... ..+||++||.+. ++..
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~------- 151 (248)
T PRK06947 79 GRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP------- 151 (248)
T ss_pred CCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC-------
Confidence 57999999997432 22344556789999999988876433 2211 236999999764 3311
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.....|+.+|.+.+.+++.+++++ |++++++|||.+..+....... +..........++
T Consensus 152 -----~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~~~-~~~~~~~~~~~~~------------ 213 (248)
T PRK06947 152 -----NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASGGQ-PGRAARLGAQTPL------------ 213 (248)
T ss_pred -----CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCcccccccccCC-HHHHHHHhhcCCC------------
Confidence 123469999999999999888765 7999999999999874321111 1111111111111
Q ss_pred EeceeHHHHHHHHHHHHhhcC
Q 011841 337 RDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~ 357 (476)
.....++|+++.++.++..+.
T Consensus 214 ~~~~~~e~va~~~~~l~~~~~ 234 (248)
T PRK06947 214 GRAGEADEVAETIVWLLSDAA 234 (248)
T ss_pred CCCcCHHHHHHHHHHHcCccc
Confidence 113578999999999887754
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=161.88 Aligned_cols=203 Identities=16% Similarity=0.113 Sum_probs=145.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC------
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV------ 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~------ 192 (476)
|+||||||+|+||.+++++|+++|++|++++|+.+. ...... ......++++.+|++|.+++.++++.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAG----LAALAA-ELGAGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHH----HHHHHH-HhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999985431 111111 122347899999999999988887643
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccc-cCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSV-YGLNTQVPFSESHRT 263 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~v-yg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ..+.++.+..+++|+.++..+++++.. .+. .+||++||... ++.
T Consensus 77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~------------ 143 (260)
T PRK08267 77 RLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPG-ARVINTSSASAIYGQ------------ 143 (260)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CEEEEeCchhhCcCC------------
Confidence 67999999997543 223345678899999999999888743 333 38999999754 332
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.....|+.+|.+.+.+++.++.+ .++++++|+||.+..+....... ........ .....+
T Consensus 144 -~~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~~~~~~~~--~~~~~~~~--------------~~~~~~ 206 (260)
T PRK08267 144 -PGLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTAMLDGTSN--EVDAGSTK--------------RLGVRL 206 (260)
T ss_pred -CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCcccccccc--hhhhhhHh--------------hccCCC
Confidence 23467999999999999988755 37999999999997653221000 00000000 001135
Q ss_pred eHHHHHHHHHHHHhhc
Q 011841 341 YIDDVVKGCVGALDTA 356 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~ 356 (476)
.++|+|++++.+++..
T Consensus 207 ~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 207 TPEDVAEAVWAAVQHP 222 (260)
T ss_pred CHHHHHHHHHHHHhCC
Confidence 6799999999999754
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=161.03 Aligned_cols=207 Identities=16% Similarity=0.109 Sum_probs=144.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++|+||||+|+||.+++++|+++|++|++++|+... ....... .+..++.+|++|+++++++++..
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~----~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEA----GKAAADE----VGGLFVPTDVTDEDAVNALFDTAAET 76 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHH----cCCcEEEeeCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999985321 1111111 12367899999999999888753
Q ss_pred --CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCcc-ccCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSS-VYGLNTQVPFSE 259 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~-vyg~~~~~~~~E 259 (476)
++|+|||+||.... +.+.+..+..+++|+.++..+++.+. +.+. .++|++||.. +++..
T Consensus 77 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-g~iv~~sS~~~~~g~~------- 148 (255)
T PRK06057 77 YGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGK-GSIINTASFVAVMGSA------- 148 (255)
T ss_pred cCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCC-cEEEEEcchhhccCCC-------
Confidence 67999999987432 12234466789999999888777653 3443 3899999854 55421
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc--HHHHHHHHHcCCceEEEeeCCCCc
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA--YFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
.+...|+.+|.+.+.+++.++.++ |+++++||||.+.++....... .....+.+. .+.
T Consensus 149 -----~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~-----~~~------- 211 (255)
T PRK06057 149 -----TSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKDPERAARRLV-----HVP------- 211 (255)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhhccCCHHHHHHHHh-----cCC-------
Confidence 234579999999888888765543 7999999999999875321100 011111110 011
Q ss_pred eeEeceeHHHHHHHHHHHHhhc
Q 011841 335 VARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
...+..++|+++++..++...
T Consensus 212 -~~~~~~~~~~a~~~~~l~~~~ 232 (255)
T PRK06057 212 -MGRFAEPEEIAAAVAFLASDD 232 (255)
T ss_pred -CCCCcCHHHHHHHHHHHhCcc
Confidence 124788999999988877654
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-17 Score=159.06 Aligned_cols=225 Identities=16% Similarity=0.069 Sum_probs=155.0
Q ss_pred CCCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCCCCC-------CchHHHHHHhhh-cCCceEEEEeecCCHHHH
Q 011841 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYY-------DPSLKRARQKLL-QKHQVFIVEGDLNDAPLL 185 (476)
Q Consensus 116 ~~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~~~~-------~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l 185 (476)
.++++||||||+| +||.++++.|+++|++|++++|..... ............ ....++++.+|++|.+++
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 3568999999995 799999999999999999999862211 111111111111 123689999999999998
Q ss_pred HHhhccC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCccccCCCC
Q 011841 186 TKLFDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNT 253 (476)
Q Consensus 186 ~~~~~~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~---~~~~~~V~~SS~~vyg~~~ 253 (476)
.++++.. ++|+|||+||.... ....++++..+++|+.++..+++++... ...++||++||...+++.
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~- 161 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPM- 161 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccCCC-
Confidence 8877642 58999999987432 1233456678999999999999987543 122389999998766432
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeC
Q 011841 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (476)
.+...|+.+|.+.|.+++.++.++ |++++.++||.+..+.... .+...+....+
T Consensus 162 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~-----~~~~~~~~~~~------- 218 (256)
T PRK12748 162 -----------PDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE-----ELKHHLVPKFP------- 218 (256)
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh-----hHHHhhhccCC-------
Confidence 345679999999999999887664 8999999999987764321 11111111111
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
...+..++|+++++..++..... ..| +++++.++
T Consensus 219 -----~~~~~~~~~~a~~~~~l~~~~~~~~~g-----------~~~~~d~g 253 (256)
T PRK12748 219 -----QGRVGEPVDAARLIAFLVSEEAKWITG-----------QVIHSEGG 253 (256)
T ss_pred -----CCCCcCHHHHHHHHHHHhCcccccccC-----------CEEEecCC
Confidence 01244579999998877765432 222 78888665
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-17 Score=161.52 Aligned_cols=216 Identities=15% Similarity=0.085 Sum_probs=152.1
Q ss_pred CCCCEEEEECCCC-hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAG-FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG-~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+++++||||+| .||.++++.|+++|++|++++|+.+..+......... ....++.++.+|++|+++++++++.+
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAE-LGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-cCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 4568999999997 7999999999999999999998554322211111111 11236889999999999988888643
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++....+++|+.++..+++++.. .+...+||++||...+-.
T Consensus 94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~---------- 163 (262)
T PRK07831 94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRA---------- 163 (262)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCC----------
Confidence 67999999996432 223345667889999999988887643 321248999988654311
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
..+...|+.+|.+.+.+++.++.+ +|+++++|+||.+..|...... .......+....++ ..
T Consensus 164 --~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~~-~~~~~~~~~~~~~~------------~r 228 (262)
T PRK07831 164 --QHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKVT-SAELLDELAAREAF------------GR 228 (262)
T ss_pred --CCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCccccccc-CHHHHHHHHhcCCC------------CC
Confidence 134567999999999999999876 4899999999999988533211 12233333333222 12
Q ss_pred ceeHHHHHHHHHHHHhhcC
Q 011841 339 FTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~ 357 (476)
+..++|+|++++.++....
T Consensus 229 ~~~p~~va~~~~~l~s~~~ 247 (262)
T PRK07831 229 AAEPWEVANVIAFLASDYS 247 (262)
T ss_pred CcCHHHHHHHHHHHcCchh
Confidence 5667999999999887643
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.5e-18 Score=166.87 Aligned_cols=213 Identities=20% Similarity=0.175 Sum_probs=151.6
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
...+|+|+||||+.+||.+++.+|+++|.+++.+.|..++.+...++.++..... ++.++++|++|.+++.++++..
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~-~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE-KVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC-ccEEEeCccCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999998877766555555544444 7999999999999999887432
Q ss_pred ---CccEEEEccccCChhh----hhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|++|||||..-... ..++....+++|+.|+..+.+++ ++.+ .+|||.+||++-+-..
T Consensus 88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~~--------- 157 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMPL--------- 157 (282)
T ss_pred hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccCC---------
Confidence 6799999999854321 22344568999999988877765 5555 3599999998854221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcE--E--EEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIYGLAL--T--GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~--~--ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
+....|++||.+.+.+.+.++.+..-.. + ++.||.|-...... .+ .+..- .....
T Consensus 158 ---P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V~Te~~~~---------~~-~~~~~--------~~~~~ 216 (282)
T KOG1205|consen 158 ---PFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPIETEFTGK---------EL-LGEEG--------KSQQG 216 (282)
T ss_pred ---CcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCceeecccch---------hh-ccccc--------ccccc
Confidence 3334899999999999999998873222 2 47788875542111 11 11100 02233
Q ss_pred eceeHHHHHH--HHHHHHhhcCcC
Q 011841 338 DFTYIDDVVK--GCVGALDTAGKS 359 (476)
Q Consensus 338 ~~v~v~Dva~--a~~~~l~~~~~~ 359 (476)
.....+|++. .+..++.++...
T Consensus 217 ~~~~~~~~~~~~~~~~~i~~~~~~ 240 (282)
T KOG1205|consen 217 PFLRTEDVADPEAVAYAISTPPCR 240 (282)
T ss_pred chhhhhhhhhHHHHHHHHhcCccc
Confidence 4555667754 777777776554
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-17 Score=161.19 Aligned_cols=227 Identities=13% Similarity=0.081 Sum_probs=154.2
Q ss_pred CCCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|++|||||++ .||++++++|+++|++|++.+|+... .+........ ......+.+|++|.++++++++.+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~-~~~~~~~~~~---~g~~~~~~~Dv~d~~~v~~~~~~~~ 80 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL-GKRVKPLAES---LGSDFVLPCDVEDIASVDAVFEALE 80 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH-HHHHHHHHHh---cCCceEEeCCCCCHHHHHHHHHHHH
Confidence 4678999999997 99999999999999999999885321 1111111111 122357899999999988887653
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|++|||||.... +.+.++.+..+++|+.++..+++++...- ..++||++||.+....
T Consensus 81 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~-------- 152 (271)
T PRK06505 81 KKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRV-------- 152 (271)
T ss_pred HHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCcccc--------
Confidence 68999999997421 23345667789999999999888764321 1248999999764211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+....|+.+|.+.+.+++.++.++ |++++.|.||.|-.+................+..++
T Consensus 153 ----~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p~------------ 216 (271)
T PRK06505 153 ----MPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSPL------------ 216 (271)
T ss_pred ----CCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCCc------------
Confidence 1345679999999999999988774 799999999999876422100011111111111111
Q ss_pred EeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++.... ..+| +++.+.++.
T Consensus 217 ~r~~~peeva~~~~fL~s~~~~~itG-----------~~i~vdgG~ 251 (271)
T PRK06505 217 RRTVTIDEVGGSALYLLSDLSSGVTG-----------EIHFVDSGY 251 (271)
T ss_pred cccCCHHHHHHHHHHHhCccccccCc-----------eEEeecCCc
Confidence 124568999999999886533 2233 777777654
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-18 Score=164.95 Aligned_cols=224 Identities=17% Similarity=0.114 Sum_probs=155.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++|+||||+|+||.+++++|+++|++|++++|+.+. ........ ..++.++.+|++|.+++.++++.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEK----LASLRQRF--GDHVLVVEGDVTSYADNQRAVDQTVDA 77 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999985432 11111111 236888999999999988887653
Q ss_pred --CccEEEEccccCCh-----hhhhc----ChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCccccCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQ----NPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~----~~~~~~~~nv~gt~~ll~~a~~~--~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||.... ....+ ..+..+++|+.++..+++++... ....++|++||...+...
T Consensus 78 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------- 150 (263)
T PRK06200 78 FGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPG------- 150 (263)
T ss_pred cCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCC-------
Confidence 68999999997431 11112 14567889999999988887532 112489999998765332
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCCC---------cHHHHHHHHHcCCceEEEe
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDM---------AYFFFTKDILQGKTIDVYK 328 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~~---------~~~~~~~~~~~g~~~~~~~ 328 (476)
.+...|+.+|.+.+.+++.++.++ +++++.|.||.|..+...... ........+.+..
T Consensus 151 -----~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 219 (263)
T PRK06200 151 -----GGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMIAAIT------ 219 (263)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccccCCCCcccccccchhHHhhcCC------
Confidence 334579999999999999988875 599999999999776321100 0011111111111
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhc-C-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTA-G-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~-~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
....+..++|+|++++.++... . ..+| +++.+.++
T Consensus 220 ------p~~r~~~~~eva~~~~fl~s~~~~~~itG-----------~~i~vdgG 256 (263)
T PRK06200 220 ------PLQFAPQPEDHTGPYVLLASRRNSRALTG-----------VVINADGG 256 (263)
T ss_pred ------CCCCCCCHHHHhhhhhheecccccCcccc-----------eEEEEcCc
Confidence 1124677899999999988654 2 2232 77777665
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3e-17 Score=157.08 Aligned_cols=222 Identities=14% Similarity=0.070 Sum_probs=153.4
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC-----
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~----- 192 (476)
|++|||||+|+||.++++.|+++|++|+++.|... .......... ....++.++.+|++|++++.++++..
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNE---ERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELG 77 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCH---HHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 57999999999999999999999999999988321 1111111111 12347889999999999988877643
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... ....++++..++.|+.++..+++. +++.+.. +||++||.....+.
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~iss~~~~~~~------------ 144 (242)
T TIGR01829 78 PIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWG-RIINISSVNGQKGQ------------ 144 (242)
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEcchhhcCCC------------
Confidence 57999999997432 223445667889999998776555 4455554 89999996543211
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.+...|+.+|.+.+.+++.++++ .|+++++++||.+.++.... ....+...+....+. ..+..
T Consensus 145 ~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~--~~~~~~~~~~~~~~~------------~~~~~ 210 (242)
T TIGR01829 145 FGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMA--MREDVLNSIVAQIPV------------GRLGR 210 (242)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccc--cchHHHHHHHhcCCC------------CCCcC
Confidence 34567999999999888887655 38999999999999875432 112233333333222 12456
Q ss_pred HHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 342 IDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+|+++++..++.++.. ..| +++.+.++.
T Consensus 211 ~~~~a~~~~~l~~~~~~~~~G-----------~~~~~~gg~ 240 (242)
T TIGR01829 211 PEEIAAAVAFLASEEAGYITG-----------ATLSINGGL 240 (242)
T ss_pred HHHHHHHHHHHcCchhcCccC-----------CEEEecCCc
Confidence 79999999887755432 222 888888763
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-18 Score=164.09 Aligned_cols=217 Identities=18% Similarity=0.102 Sum_probs=147.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-----
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~----- 192 (476)
++++||||+|+||.++++.|+++|++|++++|+.+.. ........ ....+.++.+|++|++++.++++..
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~ 76 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETA----KETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFG 76 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999999999999999853211 11111111 1336889999999999988877643
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... +.+.++.+..+++|+.++..+++++. +.+...+||++||.....+.
T Consensus 77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------ 144 (254)
T TIGR02415 77 GFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGN------------ 144 (254)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCC------------
Confidence 57999999997432 22345566789999999988777654 33333489999996543221
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHc--CCceEE-EeeCCCCceeEe
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ--GKTIDV-YKTQDDREVARD 338 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~--g~~~~~-~~~~~~~~~~~~ 338 (476)
.....|+.+|.+.+.+++.+..++ ++++++|+||.+.++... .+.....+ +.++.. ............
T Consensus 145 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (254)
T TIGR02415 145 PILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPMWE------EIDEETSEIAGKPIGEGFEEFSSEIALGR 218 (254)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChhhh------hhhhhhhhcccCchHHHHHHHHhhCCCCC
Confidence 345789999999999999887765 799999999998766321 11100000 000000 000000011123
Q ss_pred ceeHHHHHHHHHHHHhhcC
Q 011841 339 FTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~ 357 (476)
++.++|+++++..++....
T Consensus 219 ~~~~~~~a~~~~~l~~~~~ 237 (254)
T TIGR02415 219 PSEPEDVAGLVSFLASEDS 237 (254)
T ss_pred CCCHHHHHHHHHhhccccc
Confidence 7888999999999998764
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=182.00 Aligned_cols=238 Identities=17% Similarity=0.145 Sum_probs=158.5
Q ss_pred CCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh---cCCceEEEEeecCCHHHHHHhh
Q 011841 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL---QKHQVFIVEGDLNDAPLLTKLF 189 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~---~~~~v~~~~~Dl~d~~~l~~~~ 189 (476)
+....+|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ....+..+.+|++|.+++.+++
T Consensus 409 ~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~----~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~ 484 (676)
T TIGR02632 409 EKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAA----EAVAAEINGQFGAGRAVALKMDVTDEQAVKAAF 484 (676)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHH----HHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHH
Confidence 3445689999999999999999999999999999999854321 11111111 2235788999999999999888
Q ss_pred ccC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCC
Q 011841 190 DVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 190 ~~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~ 256 (476)
+.+ ++|+||||||.... ....++.+..+++|+.+...+++.+ ++.+...+||++||...+...
T Consensus 485 ~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~---- 560 (676)
T TIGR02632 485 ADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAG---- 560 (676)
T ss_pred HHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCC----
Confidence 754 67999999997432 1123445667889999877766443 344433489999996543211
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCccc-CCCCCCCCcHHHHHHHHHcCCc----eEEEe
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVY-GPWGRPDMAYFFFTKDILQGKT----IDVYK 328 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~g~~----~~~~~ 328 (476)
.....|+.+|.+.+.+++.++.++ |++++.|+|+.|+ |.+......... +....+.. ...+
T Consensus 561 --------~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~~~~~--~~~~~~~~~~~~~~~~- 629 (676)
T TIGR02632 561 --------KNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGEWREE--RAAAYGIPADELEEHY- 629 (676)
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCcccccccchhh--hhhcccCChHHHHHHH-
Confidence 345789999999999999988764 7999999999987 332111000000 00000000 0000
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
........+++++|+|++++.++... ...+| .++++.++..
T Consensus 630 --~~r~~l~r~v~peDVA~av~~L~s~~~~~~TG-----------~~i~vDGG~~ 671 (676)
T TIGR02632 630 --AKRTLLKRHIFPADIAEAVFFLASSKSEKTTG-----------CIITVDGGVP 671 (676)
T ss_pred --HhcCCcCCCcCHHHHHHHHHHHhCCcccCCcC-----------cEEEECCCch
Confidence 01222345789999999999988643 23333 8899988653
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=159.71 Aligned_cols=227 Identities=11% Similarity=0.068 Sum_probs=151.3
Q ss_pred CCCCEEEEECC--CChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGa--tG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.+++++||||| ++.||++++++|+++|++|++..|... ..+..++... +......+.+|++|.++++++++.+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDK-LEERVRKMAA---ELDSELVFRCDVASDDEINQVFADLG 79 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHH-HHHHHHHHHh---ccCCceEEECCCCCHHHHHHHHHHHH
Confidence 56789999997 679999999999999999999877421 1111111111 1124567899999999998887643
Q ss_pred ----CccEEEEccccCCh---------hhhhcChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCccccCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV---------RYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~---------~~~~~~~~~~~~~nv~gt~~ll~~a~~~--~~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
++|++|||||.... ....+..+..+++|+.++..+.+.+... ..+.+||++||.+.+...
T Consensus 80 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~----- 154 (261)
T PRK08690 80 KHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAI----- 154 (261)
T ss_pred HHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCC-----
Confidence 68999999997532 1122334566788999988887765321 112489999987653211
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
+....|+.+|.+.+.+++.++.+ +|++++.|.||.|-.+..............+.+..++
T Consensus 155 -------~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~---------- 217 (261)
T PRK08690 155 -------PNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPL---------- 217 (261)
T ss_pred -------CCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcCCC----------
Confidence 34567999999999998888755 4899999999999776321100011122222222111
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++..... .+| +++-+.++.
T Consensus 218 --~r~~~peevA~~v~~l~s~~~~~~tG-----------~~i~vdgG~ 252 (261)
T PRK08690 218 --RRNVTIEEVGNTAAFLLSDLSSGITG-----------EITYVDGGY 252 (261)
T ss_pred --CCCCCHHHHHHHHHHHhCcccCCcce-----------eEEEEcCCc
Confidence 2366789999999999975432 233 677676653
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-17 Score=162.67 Aligned_cols=219 Identities=16% Similarity=0.101 Sum_probs=155.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+|+||||+|+||.++++.|+++|++|++++|...... ..++.++.+|++|+++++++++..
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~------------~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ------------HENYQFVPTDVSSAEEVNHTVAEIIEK 74 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc------------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998654321 236888999999999998887753
Q ss_pred --CccEEEEccccCCh-------------hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCC
Q 011841 193 --PFTHVLHLAAQAGV-------------RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNT 253 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-------------~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~ 253 (476)
++|+||||||.... ....++.+..+++|+.++..+++++... +. .+||++||...+...
T Consensus 75 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~- 152 (266)
T PRK06171 75 FGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHD-GVIVNMSSEAGLEGS- 152 (266)
T ss_pred cCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCC-cEEEEEccccccCCC-
Confidence 67999999996422 1234456678999999999999887642 22 389999998764322
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCccc-CCCCCCCC----------cHHHHHHHHH
Q 011841 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVY-GPWGRPDM----------AYFFFTKDIL 319 (476)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~-G~~~~~~~----------~~~~~~~~~~ 319 (476)
.....|+.+|.+.+.+++.++.++ |+++++|+||.+. .+...... ....+...+.
T Consensus 153 -----------~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (266)
T PRK06171 153 -----------EGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILEATGLRTPEYEEALAYTRGITVEQLRAGYT 221 (266)
T ss_pred -----------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccccCCCcChhhhhhhccccCCCHHHHHhhhc
Confidence 345789999999999999988764 8999999999985 22211100 0011111111
Q ss_pred cCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 320 QGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 320 ~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
+...+ ....+..++|+|.++..++.... .-+| +++++.++
T Consensus 222 ~~~~~----------p~~r~~~~~eva~~~~fl~s~~~~~itG-----------~~i~vdgg 262 (266)
T PRK06171 222 KTSTI----------PLGRSGKLSEVADLVCYLLSDRASYITG-----------VTTNIAGG 262 (266)
T ss_pred ccccc----------cCCCCCCHHHhhhheeeeecccccccee-----------eEEEecCc
Confidence 10011 11235778999999999886543 2233 77777665
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=163.59 Aligned_cols=208 Identities=18% Similarity=0.111 Sum_probs=143.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++++++||||+|+||++++++|+++|++|++.++.... .......... ...++.++.+|++|.+++.++++.+
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~---~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASAL---DASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchh---HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999875321 1111111111 1346889999999999988887642
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc--------C--CCCeEEEecCccccCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV--------N--PQPSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~--------~--~~~~~V~~SS~~vyg~~~~~~ 256 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++... + ...+||++||.+.+...
T Consensus 87 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 162 (306)
T PRK07792 87 LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGP---- 162 (306)
T ss_pred hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCC----
Confidence 57999999998543 2334566778999999999999876421 1 11389999997654221
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.....|+.+|.+.+.+++.++.+ +|+++++|+|+. ..+. ...+....+. ..
T Consensus 163 --------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg~-~t~~----------~~~~~~~~~~-~~------ 216 (306)
T PRK07792 163 --------VGQANYGAAKAGITALTLSAARALGRYGVRANAICPRA-RTAM----------TADVFGDAPD-VE------ 216 (306)
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCCC-CCch----------hhhhccccch-hh------
Confidence 23457999999999999988765 589999999973 1110 0011111000 00
Q ss_pred ceeEeceeHHHHHHHHHHHHhhc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
......+.++|++.++..++...
T Consensus 217 ~~~~~~~~pe~va~~v~~L~s~~ 239 (306)
T PRK07792 217 AGGIDPLSPEHVVPLVQFLASPA 239 (306)
T ss_pred hhccCCCCHHHHHHHHHHHcCcc
Confidence 01123467999999988877553
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-17 Score=158.88 Aligned_cols=227 Identities=13% Similarity=0.091 Sum_probs=152.6
Q ss_pred CCCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+++||||++ .||+++++.|+++|++|++.+|+. ...+..+.... ..+.+..+.+|++|+++++++++.+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~ 79 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAA---QLGSDIVLPCDVAEDASIDAMFAELG 79 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHh---ccCCceEeecCCCCHHHHHHHHHHHH
Confidence 4678999999985 999999999999999999988852 11111111111 1235678899999999999888643
Q ss_pred ----CccEEEEccccCCh---------hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV---------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~---------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|++|||||.... ..+.++.+..+++|+.+...+.+++...- ...+||++||.+....
T Consensus 80 ~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~------- 152 (262)
T PRK07984 80 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERA------- 152 (262)
T ss_pred hhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCC-------
Confidence 58999999996421 12234455778999999888887764321 1248999998763211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
......|+.+|.+.+.+++.++.++ |+++++|.||.|..+..........+...+....++
T Consensus 153 -----~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----------- 216 (262)
T PRK07984 153 -----IPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPI----------- 216 (262)
T ss_pred -----CCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcCCC-----------
Confidence 1334679999999999999998764 799999999999765211000011122222211111
Q ss_pred eEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|++++++.++.... ..+| +++.+.++.
T Consensus 217 -~r~~~pedva~~~~~L~s~~~~~itG-----------~~i~vdgg~ 251 (262)
T PRK07984 217 -RRTVTIEDVGNSAAFLCSDLSAGISG-----------EVVHVDGGF 251 (262)
T ss_pred -cCCCCHHHHHHHHHHHcCcccccccC-----------cEEEECCCc
Confidence 235778999999999886543 2232 677776653
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-18 Score=170.84 Aligned_cols=266 Identities=18% Similarity=0.187 Sum_probs=186.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC---CeEEEEeCCCCCCCchHH-------HHHHhhhc-----CCceEEEEeecC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG---DGVLGLDNFNSYYDPSLK-------RARQKLLQ-----KHQVFIVEGDLN 180 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G---~~V~~~~R~~~~~~~~~~-------~~~~~~~~-----~~~v~~~~~Dl~ 180 (476)
..+|+|+|||||||+|.-+++.|+..- -+++++.|.+..-+.... +......+ ..++..+.||+.
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~ 89 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS 89 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence 467999999999999999999999863 389999998765433211 11112222 257899999997
Q ss_pred CH------HHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC---
Q 011841 181 DA------PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL--- 251 (476)
Q Consensus 181 d~------~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~--- 251 (476)
++ .++..+.+.+ |+|||.||....+ +.......+|..||.++++.|++......+|++|++++.-.
T Consensus 90 ~~~LGis~~D~~~l~~eV--~ivih~AAtvrFd---e~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~ 164 (467)
T KOG1221|consen 90 EPDLGISESDLRTLADEV--NIVIHSAATVRFD---EPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGH 164 (467)
T ss_pred CcccCCChHHHHHHHhcC--CEEEEeeeeeccc---hhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheeccccc
Confidence 65 3455566666 9999999986654 44556788999999999999999876668999999987621
Q ss_pred CCCCCCCCCC-----------------------C--CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 252 NTQVPFSESH-----------------------R--TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 252 ~~~~~~~E~~-----------------------~--~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
..+.++.+.. + .....+-|.-+|+.+|.++.++++ +++++|+||+.|...+..
T Consensus 165 i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~--~lPivIiRPsiI~st~~E 242 (467)
T KOG1221|consen 165 IEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE--NLPLVIIRPSIITSTYKE 242 (467)
T ss_pred ccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc--CCCeEEEcCCceeccccC
Confidence 1222222111 0 012245699999999999999765 899999999999987554
Q ss_pred CCCcH-------HHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcC
Q 011841 307 PDMAY-------FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGN 379 (476)
Q Consensus 307 ~~~~~-------~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~ 379 (476)
|-.-| ..++-..-+|.--.+. .+.+...|++++|.|+.+++.+.-.-..... .....+||+++
T Consensus 243 P~pGWidn~~gp~g~i~g~gkGvlr~~~---~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~-------~~~~~IY~~ts 312 (467)
T KOG1221|consen 243 PFPGWIDNLNGPDGVIIGYGKGVLRCFL---VDPKAVADIIPVDMVVNAMIASAWQHAGNSK-------EKTPPIYHLTS 312 (467)
T ss_pred CCCCccccCCCCceEEEEeccceEEEEE---EccccccceeeHHHHHHHHHHHHHHHhccCC-------CCCCcEEEecc
Confidence 32111 1122222334433444 5678889999999999999976633221110 02237999999
Q ss_pred C--CcccHHHHHHHHHHHhCC
Q 011841 380 T--SPVPVGRLVSILENLLNT 398 (476)
Q Consensus 380 ~--~~vt~~el~~~l~~~~g~ 398 (476)
. .+++|.++.+...+....
T Consensus 313 s~~Np~t~~~~~e~~~~~~~~ 333 (467)
T KOG1221|consen 313 SNDNPVTWGDFIELALRYFEK 333 (467)
T ss_pred cccCcccHHHHHHHHHHhccc
Confidence 5 489999999999998764
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.1e-17 Score=158.54 Aligned_cols=211 Identities=16% Similarity=0.163 Sum_probs=148.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCch---HHHHHHhhh-cCCceEEEEeecCCHHHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS---LKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~---~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
..+++++||||+|+||.++++.|+++|++|++++|..+..... +........ ...++.++.+|++|.+++.++++.
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 4568999999999999999999999999999999976532211 111111111 134688999999999999988875
Q ss_pred C-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCccccCCCCCCCCCC
Q 011841 192 V-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 192 ~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~---~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
. ++|+||||||.... ....++.+..+++|+.++.++++++... ....++|++||.......
T Consensus 84 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~------- 156 (273)
T PRK08278 84 AVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPK------- 156 (273)
T ss_pred HHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcccc-------
Confidence 4 68999999997432 2233455678999999999999988532 112389999985422110
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCccc-CCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVY-GPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
...+...|+.+|.+.|.+++.++.++ +++++.|+||.++ .+ +.+.+..+. ..
T Consensus 157 ---~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t~----------~~~~~~~~~-----------~~ 212 (273)
T PRK08278 157 ---WFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIATA----------AVRNLLGGD-----------EA 212 (273)
T ss_pred ---ccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCccccH----------HHHhccccc-----------cc
Confidence 01356789999999999999988775 7999999998533 32 111111111 11
Q ss_pred eEeceeHHHHHHHHHHHHhhcC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
...+..++|+|+.++.++....
T Consensus 213 ~~~~~~p~~va~~~~~l~~~~~ 234 (273)
T PRK08278 213 MRRSRTPEIMADAAYEILSRPA 234 (273)
T ss_pred ccccCCHHHHHHHHHHHhcCcc
Confidence 1235788999999999987654
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-17 Score=158.62 Aligned_cols=228 Identities=13% Similarity=0.070 Sum_probs=154.1
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..+|+++||||+ +.||.+++++|+++|++|++++|.... .+..++..... ...++.++.+|++|+++++++++..
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~-~~~~~~~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~ 82 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERL-EKEVRELADTL-EGQESLLLPCDVTSDEEITACFETIK 82 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccc-hHHHHHHHHHc-CCCceEEEecCCCCHHHHHHHHHHHH
Confidence 467899999997 899999999999999999999885321 12222222222 2346888999999999988887642
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|++|||||.... +.+.+.....+++|+.++..+++++...-. ..+||++||....-.
T Consensus 83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~-------- 154 (257)
T PRK08594 83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERV-------- 154 (257)
T ss_pred HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccC--------
Confidence 58999999986421 222334556788999998888877654221 248999999764211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+....|+.+|.+.+.+.+.++.++ |++++.|+||.|..+..............+....+ .
T Consensus 155 ----~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------~ 218 (257)
T PRK08594 155 ----VQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEERAP------------L 218 (257)
T ss_pred ----CCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhcCC------------c
Confidence 1234679999999999999888764 79999999999977632100000011111111111 1
Q ss_pred EeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
..+..++|+|++++.++.... ..+| +++.+.++
T Consensus 219 ~r~~~p~~va~~~~~l~s~~~~~~tG-----------~~~~~dgg 252 (257)
T PRK08594 219 RRTTTQEEVGDTAAFLFSDLSRGVTG-----------ENIHVDSG 252 (257)
T ss_pred cccCCHHHHHHHHHHHcCcccccccc-----------eEEEECCc
Confidence 235678999999999886543 2333 67777654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.5e-17 Score=159.78 Aligned_cols=224 Identities=17% Similarity=0.153 Sum_probs=150.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
|+||||||+|+||+.++++|+++|++|++++|+.+.. .+...+.....++.++.+|++|.++++++++.+ +
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~ 76 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENL----EKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGG 76 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999999999999864322 222222222236888999999999998888643 6
Q ss_pred ccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
+|+||||||.... +...++....+.+|+.++..+... ..+....++||++||...+...
T Consensus 77 id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~----------- 145 (259)
T PRK08340 77 IDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPM----------- 145 (259)
T ss_pred CCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCC-----------
Confidence 8999999997431 112233445567787776555443 2222223489999998764221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCC---------cHHH-HHHHHHcCCceEEEeeC
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM---------AYFF-FTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~---------~~~~-~~~~~~~g~~~~~~~~~ 330 (476)
.+...|+.+|.+.+.+++.++.++ |++++.|.||.+-.+...... .... ..+.+...-+
T Consensus 146 -~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------- 217 (259)
T PRK08340 146 -PPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTP------- 217 (259)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCC-------
Confidence 345689999999999999998875 699999999998776422100 0000 0111111111
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
...+..++|+|++++.++..+. ..+| +++.+.++.
T Consensus 218 -----~~r~~~p~dva~~~~fL~s~~~~~itG-----------~~i~vdgg~ 253 (259)
T PRK08340 218 -----LKRTGRWEELGSLIAFLLSENAEYMLG-----------STIVFDGAM 253 (259)
T ss_pred -----ccCCCCHHHHHHHHHHHcCcccccccC-----------ceEeecCCc
Confidence 1236678999999999887543 2233 677776654
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=161.56 Aligned_cols=227 Identities=12% Similarity=0.036 Sum_probs=153.0
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..+|+|+||||+ +.||+++++.|+++|++|++.+|+.. ..+......... . .. .++.+|++|.++++++++.+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~-~-~~-~~~~~Dv~d~~~v~~~~~~i~ 78 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQEL-G-SD-YVYELDVSKPEHFKSLAESLK 78 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHhc-C-Cc-eEEEecCCCHHHHHHHHHHHH
Confidence 357899999997 79999999999999999999998531 111122221211 1 12 57899999999988887643
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|++|||||.... +.+.++.+..+++|+.++..+++++...- ..++||++||.+....
T Consensus 79 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~-------- 150 (274)
T PRK08415 79 KDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKY-------- 150 (274)
T ss_pred HHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccC--------
Confidence 68999999997421 22345567789999999999888765321 1248999998653211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+....|+.+|.+.+.+.+.++.++ |++++.|.||.|..+...................| .
T Consensus 151 ----~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p------------l 214 (274)
T PRK08415 151 ----VPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEINAP------------L 214 (274)
T ss_pred ----CCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhccchhhHHhhhhhhhCc------------h
Confidence 1234679999999999999988764 79999999999977532110000000000000111 1
Q ss_pred EeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++... ...+| +++.+.++.
T Consensus 215 ~r~~~pedva~~v~fL~s~~~~~itG-----------~~i~vdGG~ 249 (274)
T PRK08415 215 KKNVSIEEVGNSGMYLLSDLSSGVTG-----------EIHYVDAGY 249 (274)
T ss_pred hccCCHHHHHHHHHHHhhhhhhcccc-----------cEEEEcCcc
Confidence 23567899999999988753 33333 777777664
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-17 Score=161.73 Aligned_cols=227 Identities=16% Similarity=0.120 Sum_probs=154.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC-----CCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS-----YYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~-----~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~ 189 (476)
.+++++|||||+++||.+++++|+++|++|++++|... .............. ....+.++.+|++|.+++.+++
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 56789999999999999999999999999999987541 01111222222221 1336788999999999988877
Q ss_pred ccC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cC-----CCCeEEEecCccccCC
Q 011841 190 DVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VN-----PQPSIVWASSSSVYGL 251 (476)
Q Consensus 190 ~~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~-----~~~~~V~~SS~~vyg~ 251 (476)
+.+ ++|++|||||.... +...++.+..+++|+.++..+++++.. .. ...+||++||.+.+.+
T Consensus 84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~ 163 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQG 163 (286)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCcC
Confidence 643 67999999997432 233456678899999999888877642 11 1148999999764322
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEe
Q 011841 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYK 328 (476)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~ 328 (476)
. .....|+.+|.+.+.+++.++.+ +|++++.|.|| +..+.. ...........+
T Consensus 164 ~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~------~~~~~~~~~~~~----- 219 (286)
T PRK07791 164 S------------VGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMT------ETVFAEMMAKPE----- 219 (286)
T ss_pred C------------CCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcc------hhhHHHHHhcCc-----
Confidence 1 34567999999999999988766 48999999998 433311 111111111111
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.....+..++|+|++++.++.... ..+| +++.+.++..
T Consensus 220 -----~~~~~~~~pedva~~~~~L~s~~~~~itG-----------~~i~vdgG~~ 258 (286)
T PRK07791 220 -----EGEFDAMAPENVSPLVVWLGSAESRDVTG-----------KVFEVEGGKI 258 (286)
T ss_pred -----ccccCCCCHHHHHHHHHHHhCchhcCCCC-----------cEEEEcCCce
Confidence 111135678999999999886533 2233 7777776653
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-17 Score=159.59 Aligned_cols=227 Identities=16% Similarity=0.107 Sum_probs=153.1
Q ss_pred CCCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+++||||++ .||.++++.|+++|++|++.+|+. ..++..+..... .....++.+|++|+++++++++..
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~---~g~~~~~~~Dv~~~~~v~~~~~~~~ 81 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEE---IGCNFVSELDVTNPKSISNLFDDIK 81 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHh---cCCceEEEccCCCHHHHHHHHHHHH
Confidence 4678999999997 899999999999999999988742 111112222111 122346789999999988888642
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|++|||||.... +.+.++.+..+++|+.+...+++.+... ...++||++||.+....
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~-------- 153 (260)
T PRK06603 82 EKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKV-------- 153 (260)
T ss_pred HHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccC--------
Confidence 58999999986421 2234556678999999999988875422 11248999999664311
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+....|+.+|.+.+.+.+.++.++ |+++++|.||.|-.+..............+....|+
T Consensus 154 ----~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 217 (260)
T PRK06603 154 ----IPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAPL------------ 217 (260)
T ss_pred ----CCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcCCc------------
Confidence 1334679999999999999888764 799999999999776321100001122222222111
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++..... .+| +++.+.++.
T Consensus 218 ~r~~~pedva~~~~~L~s~~~~~itG-----------~~i~vdgG~ 252 (260)
T PRK06603 218 KRNTTQEDVGGAAVYLFSELSKGVTG-----------EIHYVDCGY 252 (260)
T ss_pred CCCCCHHHHHHHHHHHhCcccccCcc-----------eEEEeCCcc
Confidence 1356789999999999875432 233 777776653
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-17 Score=157.76 Aligned_cols=213 Identities=15% Similarity=0.103 Sum_probs=147.8
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+++||||+ +.||.+++++|+++|++|++++|+.+. .+...+...+. ..+.++.+|++|.++++++++.+
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~-~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~ 83 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA-RPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFARIA 83 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh-HHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHHHH
Confidence 567899999998 599999999999999999999986431 11122222111 24567899999999988887643
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|++|||||.... +.+.++.+..+++|+.++..+++++...- ...++|++||......
T Consensus 84 ~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~~-------- 155 (258)
T PRK07533 84 EEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEKV-------- 155 (258)
T ss_pred HHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccccC--------
Confidence 58999999997421 22345667899999999999988764321 1248999998653211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
......|+.+|.+.+.+.+.++.++ |++++.|+||.|-.+..............+.+..++
T Consensus 156 ----~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 219 (258)
T PRK07533 156 ----VENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERAPL------------ 219 (258)
T ss_pred ----CccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcCCc------------
Confidence 1335679999999999999888764 799999999999776321100011222222222111
Q ss_pred EeceeHHHHHHHHHHHHhhc
Q 011841 337 RDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~ 356 (476)
..+..++|+|++++.++...
T Consensus 220 ~r~~~p~dva~~~~~L~s~~ 239 (258)
T PRK07533 220 RRLVDIDDVGAVAAFLASDA 239 (258)
T ss_pred CCCCCHHHHHHHHHHHhChh
Confidence 13567899999999988653
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-18 Score=156.45 Aligned_cols=279 Identities=17% Similarity=0.115 Sum_probs=199.8
Q ss_pred CCEEEEECCCChhhHHHHH-----HHHHCC----CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh
Q 011841 118 GMTVLVTGAAGFVGSHCSL-----ALKKRG----DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL 188 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~-----~L~~~G----~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 188 (476)
....++-+++|+|+..|.. .+-..+ |.|+++.|..... +..-+.++.+++-+ .+
T Consensus 12 sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~-----ritw~el~~~Gip~------------sc 74 (315)
T KOG3019|consen 12 SRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA-----RITWPELDFPGIPI------------SC 74 (315)
T ss_pred cccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc-----ccccchhcCCCCce------------eh
Confidence 3456677889999987776 232333 8999999955421 11111112222211 11
Q ss_pred hccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCccccCCCCCCCCCCCCCCCCCC
Q 011841 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP-SIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (476)
Q Consensus 189 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (476)
.+++ +.+.+|+...--+|+++--++.....+..+..|+++..++...+ .+|.+|..++|-..+...++|+++. ...
T Consensus 75 ~a~v--na~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~~~-qgf 151 (315)
T KOG3019|consen 75 VAGV--NAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKIVH-QGF 151 (315)
T ss_pred HHHH--hhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccccccccccccc-CCh
Confidence 1222 44445554433356665556677777777999999998877554 6999999999999888889999987 788
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC-CCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHH
Q 011841 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP-DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (476)
+......+++|..++...+ .++.++||.|.|.|.++.. .+++. .-++..|+|+ |+|+|.+.|||++|++
T Consensus 152 d~~srL~l~WE~aA~~~~~--~~r~~~iR~GvVlG~gGGa~~~M~l--pF~~g~GGPl------GsG~Q~fpWIHv~DL~ 221 (315)
T KOG3019|consen 152 DILSRLCLEWEGAALKANK--DVRVALIRIGVVLGKGGGALAMMIL--PFQMGAGGPL------GSGQQWFPWIHVDDLV 221 (315)
T ss_pred HHHHHHHHHHHHHhhccCc--ceeEEEEEEeEEEecCCcchhhhhh--hhhhccCCcC------CCCCeeeeeeehHHHH
Confidence 8888888999998887665 4899999999999986653 22222 2256678887 8899999999999999
Q ss_pred HHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCC------C-CCCcccc-
Q 011841 347 KGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN------G-DVPYTHA- 418 (476)
Q Consensus 347 ~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~------~-~~~~~~~- 418 (476)
..+..+|+++... +++|-+.+++++..|+++.+.++++++. +.|.|+. + +.....+
T Consensus 222 ~li~~ale~~~v~-------------GViNgvAP~~~~n~Ef~q~lg~aL~Rp~---~~pvP~fvvqA~fG~erA~~vLe 285 (315)
T KOG3019|consen 222 NLIYEALENPSVK-------------GVINGVAPNPVRNGEFCQQLGSALSRPS---WLPVPDFVVQALFGPERATVVLE 285 (315)
T ss_pred HHHHHHHhcCCCC-------------ceecccCCCccchHHHHHHHHHHhCCCc---ccCCcHHHHHHHhCccceeEEee
Confidence 9999999998876 8999999999999999999999999876 4444431 1 2222233
Q ss_pred ----cHHHHHHhcCCCcccC-HHHHHHHHH
Q 011841 419 ----NVSLAYKDFGYKPTTD-LAAGLRKFV 443 (476)
Q Consensus 419 ----d~~ka~~~LG~~p~~~-l~e~l~~~v 443 (476)
-..|+. ++||+.+|+ +.++|++++
T Consensus 286 GqKV~Pqral-~~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 286 GQKVLPQRAL-ELGFEFKYPYVKDALRAIM 314 (315)
T ss_pred CCcccchhHh-hcCceeechHHHHHHHHHh
Confidence 344554 599999986 788888764
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-17 Score=160.30 Aligned_cols=224 Identities=16% Similarity=0.112 Sum_probs=147.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCCHHHH----HHhhcc-
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLL----TKLFDV- 191 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l----~~~~~~- 191 (476)
++++||||+|+||.+++++|+++|++|++++|.... .......+.. ....+.++.+|++|.+++ +++++.
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~ 78 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAA---AASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDAC 78 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHH---HHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHH
Confidence 479999999999999999999999999998764321 1111222211 123567789999998754 333322
Q ss_pred ----CCccEEEEccccCChh----hhhc-----------ChHHHHHHHHHHHHHHHHHHHhcC---------CCCeEEEe
Q 011841 192 ----VPFTHVLHLAAQAGVR----YAMQ-----------NPQSYVASNIAGFVNLLEVCKSVN---------PQPSIVWA 243 (476)
Q Consensus 192 ----~~~d~Vi~~Ag~~~~~----~~~~-----------~~~~~~~~nv~gt~~ll~~a~~~~---------~~~~~V~~ 243 (476)
-++|+||||||..... .... +....+++|+.++..+++++.... ...++|++
T Consensus 79 ~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~ 158 (267)
T TIGR02685 79 FRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNL 158 (267)
T ss_pred HHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEe
Confidence 1579999999964321 1111 245679999999999988754321 11368888
Q ss_pred cCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHc
Q 011841 244 SSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ 320 (476)
Q Consensus 244 SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~ 320 (476)
||..... +..+...|+.+|.+.+.+++.++.+ .|+++++|+||.+..|.... ..+......
T Consensus 159 ~s~~~~~------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~~~~~~~~~----~~~~~~~~~ 222 (267)
T TIGR02685 159 CDAMTDQ------------PLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVAPGLSLLPDAMP----FEVQEDYRR 222 (267)
T ss_pred hhhhccC------------CCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCccCccccc----hhHHHHHHH
Confidence 8765421 1145678999999999999998877 58999999999997663221 112222222
Q ss_pred CCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCcc
Q 011841 321 GKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 321 g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..++ + ..+..++|++++++.++...... +| +.+.+.++...
T Consensus 223 ~~~~--------~---~~~~~~~~va~~~~~l~~~~~~~~~G-----------~~~~v~gg~~~ 264 (267)
T TIGR02685 223 KVPL--------G---QREASAEQIADVVIFLVSPKAKYITG-----------TCIKVDGGLSL 264 (267)
T ss_pred hCCC--------C---cCCCCHHHHHHHHHHHhCcccCCccc-----------ceEEECCceec
Confidence 1111 0 12457899999999988754322 22 77777766543
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=176.33 Aligned_cols=225 Identities=15% Similarity=0.104 Sum_probs=160.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+|++|||||+|+||.+++++|+++|++|++++|+.+. .+..... . ...+..+.+|++|+++++++++..
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 340 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEG----AKKLAEA-L-GDEHLSVQADITDEAAVESAFAQIQAR 340 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHH-h-CCceeEEEccCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999985432 1111111 1 235778899999999998888753
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... +.+.++.+..+++|+.++..+++++...- ...+||++||.+.+...
T Consensus 341 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 408 (520)
T PRK06484 341 WGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLAL------------ 408 (520)
T ss_pred cCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCC------------
Confidence 58999999997421 23345667889999999999999876532 12489999998765322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCC-cHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... ........+.+..+. ..+.
T Consensus 409 ~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~------------~~~~ 476 (520)
T PRK06484 409 PPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIPL------------GRLG 476 (520)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCCC------------CCCc
Confidence 355789999999999999988764 799999999999887422100 001111222222111 1256
Q ss_pred eHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 341 YIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.++|+|++++.++.... ..+| +++.+.++.
T Consensus 477 ~~~dia~~~~~l~s~~~~~~~G-----------~~i~vdgg~ 507 (520)
T PRK06484 477 DPEEVAEAIAFLASPAASYVNG-----------ATLTVDGGW 507 (520)
T ss_pred CHHHHHHHHHHHhCccccCccC-----------cEEEECCCc
Confidence 78999999999886532 2222 788887653
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-17 Score=157.74 Aligned_cols=227 Identities=12% Similarity=0.046 Sum_probs=154.1
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCC--CchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYY--DPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~--~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
..+|+++||||+ +.||.+++++|+++|++|++..|..+.. .+..++... ....+.++.+|++|+++++++++.
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~v~~~~~~ 80 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTE---PLNPSLFLPCDVQDDAQIEETFET 80 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHh---ccCcceEeecCcCCHHHHHHHHHH
Confidence 467899999986 7999999999999999999887654311 111111111 112467889999999999888865
Q ss_pred C-----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCC
Q 011841 192 V-----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 192 ~-----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
+ ++|++|||||.... ..+.++.+..+++|+.++..+++++...- ..++||++||......
T Consensus 81 ~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~------ 154 (258)
T PRK07370 81 IKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRA------ 154 (258)
T ss_pred HHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccC------
Confidence 4 68999999997421 22344567789999999999888764311 1248999999653211
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
.+....|+.+|.+.+.+++.++.++ |+++++|.||.|-.+..............+....+
T Consensus 155 ------~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p----------- 217 (258)
T PRK07370 155 ------IPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKAP----------- 217 (258)
T ss_pred ------CcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhccccchhhhhhhhhcCC-----------
Confidence 1345679999999999999998775 79999999999977632110000111111111111
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
...+...+|++.+++.++..... -+| +++.+.++
T Consensus 218 -~~r~~~~~dva~~~~fl~s~~~~~~tG-----------~~i~vdgg 252 (258)
T PRK07370 218 -LRRTVTQTEVGNTAAFLLSDLASGITG-----------QTIYVDAG 252 (258)
T ss_pred -cCcCCCHHHHHHHHHHHhChhhccccC-----------cEEEECCc
Confidence 12366789999999998865432 233 67777655
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.5e-17 Score=157.73 Aligned_cols=212 Identities=15% Similarity=0.115 Sum_probs=143.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC------
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV------ 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~------ 192 (476)
|+|+||||+|+||++++++|+++|++|++++|... +....... ....+++++.+|++|.++++++++.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~---~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTEN---KELTKLAE--QYNSNLTFHSLDLQDVHELETNFNEILSSIQE 76 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCch---HHHHHHHh--ccCCceEEEEecCCCHHHHHHHHHHHHHhcCc
Confidence 68999999999999999999999999999998542 11111111 11347889999999999998888643
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
..+++||+||.... ..+.++....+++|+.+...+++.+ ++.+..++||++||...+..
T Consensus 77 ~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~--------- 147 (251)
T PRK06924 77 DNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNP--------- 147 (251)
T ss_pred ccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCC---------
Confidence 12389999987432 2234456677888998876666554 33333348999999765422
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeeCcccCCCCCC----CCcHHHHHHHHHcCCceEEEeeCC
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~ 331 (476)
.++...|+.+|.+.+.+++.++.+ ++++++.|+||.+-.+.... ........+.+....+
T Consensus 148 ---~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-------- 216 (251)
T PRK06924 148 ---YFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITLKE-------- 216 (251)
T ss_pred ---CCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcCcccchHHHHHHHHhh--------
Confidence 145678999999999999988765 36999999999987653110 0000001111111000
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcCcC
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAGKS 359 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~~~ 359 (476)
...+..++|+|+.++.++......
T Consensus 217 ----~~~~~~~~dva~~~~~l~~~~~~~ 240 (251)
T PRK06924 217 ----EGKLLSPEYVAKALRNLLETEDFP 240 (251)
T ss_pred ----cCCcCCHHHHHHHHHHHHhcccCC
Confidence 112578899999999999874333
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-17 Score=155.29 Aligned_cols=201 Identities=15% Similarity=0.091 Sum_probs=141.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCC--HHHHHHhhc-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLND--APLLTKLFD- 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d--~~~l~~~~~- 190 (476)
..+++|+||||+|+||.++++.|+++|++|++++|+....+ ....... ....+.++.+|+.| .+++.++++
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~----~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLE----KVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAAT 79 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHH----HHHHHHHHcCCCCcceEEeeecccchHHHHHHHHH
Confidence 46689999999999999999999999999999999654221 1111111 12356788899975 345554442
Q ss_pred ---c--CCccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCC
Q 011841 191 ---V--VPFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 191 ---~--~~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~ 256 (476)
. .++|+||||||.... +...++....+++|+.++.++++++.. .+. +++|++||.....
T Consensus 80 i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~~ss~~~~~------ 152 (239)
T PRK08703 80 IAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPD-ASVIFVGESHGET------ 152 (239)
T ss_pred HHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCC-CEEEEEecccccc------
Confidence 1 257999999996421 223445567899999999988887643 333 4899999865321
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCC
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDD 332 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (476)
+......|+.+|.+.+.+++.++.++ ++++++|+||.|++|..... ..+
T Consensus 153 ------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~----------~~~----------- 205 (239)
T PRK08703 153 ------PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKS----------HPG----------- 205 (239)
T ss_pred ------CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCcccccc----------CCC-----------
Confidence 11345679999999999999988775 59999999999999842210 001
Q ss_pred CceeEeceeHHHHHHHHHHHHhh
Q 011841 333 REVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 333 ~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
.....+...+|++.+++.++..
T Consensus 206 -~~~~~~~~~~~~~~~~~~~~~~ 227 (239)
T PRK08703 206 -EAKSERKSYGDVLPAFVWWASA 227 (239)
T ss_pred -CCccccCCHHHHHHHHHHHhCc
Confidence 1111346789999999999874
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-17 Score=159.11 Aligned_cols=211 Identities=15% Similarity=0.090 Sum_probs=143.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
|+++||||+|+||.++++.|+++|++|++++|+.+..+...+... ......+.++.+|++|++++.++++.. +
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADAR--ALGGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999985432211111111 111223456789999999988777653 5
Q ss_pred ccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
+|+||||||.... +.+.++.+..+++|+.++..+++++.. .+...+||++||...+.+. .
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~------------~ 146 (272)
T PRK07832 79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVAL------------P 146 (272)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCC------------C
Confidence 7999999997432 234455677899999999999998642 2222489999997643211 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCc-----HHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 266 PASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMA-----YFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
....|+.+|.+.+.+.+.++.+ +++++++++||.+.++....... .......... ....
T Consensus 147 ~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~ 213 (272)
T PRK07832 147 WHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPLVNTVEIAGVDREDPRVQKWVD-------------RFRG 213 (272)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhcccccccCcchhhHHHHHH-------------hccc
Confidence 4567999999998888877644 48999999999999874321000 0000000000 0012
Q ss_pred eceeHHHHHHHHHHHHhhc
Q 011841 338 DFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~ 356 (476)
..+.++|+|++++.+++..
T Consensus 214 ~~~~~~~vA~~~~~~~~~~ 232 (272)
T PRK07832 214 HAVTPEKAAEKILAGVEKN 232 (272)
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 3578999999999999643
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-17 Score=156.38 Aligned_cols=227 Identities=12% Similarity=0.051 Sum_probs=152.9
Q ss_pred CCCCEEEEECC--CChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGa--tG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++++|+|||| ++.||.+++++|+++|++|++++|... ..+......... .....+.+|++|+++++++++..
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEF---GSDLVFPCDVASDEQIDALFASLG 79 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHhc---CCcceeeccCCCHHHHHHHHHHHH
Confidence 46789999996 679999999999999999999876421 111111111111 23356889999999999888643
Q ss_pred ----CccEEEEccccCCh---------hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV---------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~---------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|++|||||.... ..+.++.+..+++|+.++..+++++...- ..++||++||....-.
T Consensus 80 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~------- 152 (260)
T PRK06997 80 QHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERV------- 152 (260)
T ss_pred HHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccC-------
Confidence 68999999997432 12334566789999999998888765421 1248999998764211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
......|+.+|.+.+.+.+.++.++ |++++.|.||.|-.+..............+....++
T Consensus 153 -----~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----------- 216 (260)
T PRK06997 153 -----VPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNAPL----------- 216 (260)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhccccchhhHHHHHHhcCcc-----------
Confidence 1234579999999999999988764 799999999999765221000001111112111111
Q ss_pred eEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|++++++.++..+. ..+| +++.+.++.
T Consensus 217 -~r~~~pedva~~~~~l~s~~~~~itG-----------~~i~vdgg~ 251 (260)
T PRK06997 217 -RRNVTIEEVGNVAAFLLSDLASGVTG-----------EITHVDSGF 251 (260)
T ss_pred -cccCCHHHHHHHHHHHhCccccCcce-----------eEEEEcCCh
Confidence 125678999999999987643 3333 778776654
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.9e-17 Score=158.13 Aligned_cols=227 Identities=11% Similarity=0.043 Sum_probs=154.1
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..+|++|||||+ +.||.++++.|+++|++|+++.|... ..+........ ...+..+.+|++|+++++++++..
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~ 83 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAE---LGAFVAGHCDVTDEASIDAVFETLE 83 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHh---cCCceEEecCCCCHHHHHHHHHHHH
Confidence 456899999997 89999999999999999998887421 11112222111 123567899999999999887653
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|++|||||.... +.+.++.+..+++|+.++..+++.+...- ..+++|++||.+....
T Consensus 84 ~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~-------- 155 (272)
T PRK08159 84 KKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKV-------- 155 (272)
T ss_pred HhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccC--------
Confidence 58999999997431 22345567889999999999998875421 1248999998654211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+....|+.+|.+.+.+++.++.++ |+++++|.||.+..+........... ....+. ..+ .
T Consensus 156 ----~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~-~~~~~~-~~p----------~ 219 (272)
T PRK08159 156 ----MPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASGIGDFRYI-LKWNEY-NAP----------L 219 (272)
T ss_pred ----CCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhcCCcchHH-HHHHHh-CCc----------c
Confidence 1345679999999999999988764 79999999999976522110000001 111111 011 1
Q ss_pred EeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++.... ..+| .++.+.++.
T Consensus 220 ~r~~~peevA~~~~~L~s~~~~~itG-----------~~i~vdgG~ 254 (272)
T PRK08159 220 RRTVTIEEVGDSALYLLSDLSRGVTG-----------EVHHVDSGY 254 (272)
T ss_pred cccCCHHHHHHHHHHHhCccccCccc-----------eEEEECCCc
Confidence 125778999999999986543 2233 778887764
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-16 Score=153.26 Aligned_cols=211 Identities=15% Similarity=0.068 Sum_probs=145.5
Q ss_pred CCCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCCCCC------Cc-hHHHHHHhhh-cCCceEEEEeecCCHHHH
Q 011841 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYY------DP-SLKRARQKLL-QKHQVFIVEGDLNDAPLL 185 (476)
Q Consensus 116 ~~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~~~~------~~-~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l 185 (476)
.++++|+||||+| .||.+++++|+++|++|++++|..... +. .......... ....+.++.+|++|.+++
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i 83 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAP 83 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence 5678999999995 899999999999999999986532110 01 1111111111 123678899999999998
Q ss_pred HHhhccC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCC
Q 011841 186 TKLFDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLN 252 (476)
Q Consensus 186 ~~~~~~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~ 252 (476)
.++++.. ++|+||||||.... ..+.++.+..+++|+.+...+...+ ++.+. .+||++||...+..
T Consensus 84 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~- 161 (256)
T PRK12859 84 KELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSG-GRIINMTSGQFQGP- 161 (256)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCC-eEEEEEcccccCCC-
Confidence 8888643 47999999997432 2334456678999999988886544 33333 38999999775421
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEee
Q 011841 253 TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKT 329 (476)
Q Consensus 253 ~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~ 329 (476)
..+...|+.+|.+.+.+++.++.+ +|++++.|+||.+-.+.... .+...+....+.
T Consensus 162 -----------~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~-----~~~~~~~~~~~~----- 220 (256)
T PRK12859 162 -----------MVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE-----EIKQGLLPMFPF----- 220 (256)
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH-----HHHHHHHhcCCC-----
Confidence 145678999999999999988766 48999999999987763221 111222211111
Q ss_pred CCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 330 QDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
..+..++|+|++++.++...
T Consensus 221 -------~~~~~~~d~a~~~~~l~s~~ 240 (256)
T PRK12859 221 -------GRIGEPKDAARLIKFLASEE 240 (256)
T ss_pred -------CCCcCHHHHHHHHHHHhCcc
Confidence 12456899999999887653
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.5e-17 Score=153.57 Aligned_cols=206 Identities=14% Similarity=0.051 Sum_probs=145.7
Q ss_pred EEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-----Cc
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-----PF 194 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-----~~ 194 (476)
|+||||+|+||.++++.|+++|++|++++|..+. .......... ...++.++.+|++|.+++.++++.. ++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 77 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRS---DAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAY 77 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999999999875421 1111111111 1346899999999999988877642 57
Q ss_pred cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH-----hcCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK-----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 195 d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~-----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
|++|||+|.... ....++++..+++|+.++.++++++. +.+. ++||++||...+.+. .
T Consensus 78 ~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~iv~vsS~~~~~~~------------~ 144 (239)
T TIGR01831 78 YGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQG-GRIITLASVSGVMGN------------R 144 (239)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCC-eEEEEEcchhhccCC------------C
Confidence 999999997432 23445677899999999999988752 2333 489999996543221 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 266 PASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
+...|+.+|.+.+.+++.++.+ .|++++.++||.+.++..... ........+.-++ ..+...
T Consensus 145 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~~~~~~~~~~~~~------------~~~~~~ 209 (239)
T TIGR01831 145 GQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAEV---EHDLDEALKTVPM------------NRMGQP 209 (239)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchhh---hHHHHHHHhcCCC------------CCCCCH
Confidence 3467999999999888887765 389999999999988753321 1112222222121 124567
Q ss_pred HHHHHHHHHHHhhcC
Q 011841 343 DDVVKGCVGALDTAG 357 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~ 357 (476)
+|++++++.++..+.
T Consensus 210 ~~va~~~~~l~~~~~ 224 (239)
T TIGR01831 210 AEVASLAGFLMSDGA 224 (239)
T ss_pred HHHHHHHHHHcCchh
Confidence 999999999987653
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=178.87 Aligned_cols=175 Identities=18% Similarity=0.151 Sum_probs=134.7
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
....++++|||||+|+||++++++|+++|++|++++|+.+..++...... ....++.++.+|++|++++.++++.+
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 387 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIR---AAGAVAHAYRVDVSDADAMEAFAEWVR 387 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 33567899999999999999999999999999999995432211111111 11336889999999999998888754
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... +...++.+..+++|+.|+.++++++. +.+..++||++||.+.|...
T Consensus 388 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-------- 459 (582)
T PRK05855 388 AEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPS-------- 459 (582)
T ss_pred HhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC--------
Confidence 57999999998542 22345567789999999999888753 33433489999999887543
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCC
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGP 303 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~ 303 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|-.+
T Consensus 460 ----~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 460 ----RSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 346789999999999988887653 899999999999765
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=155.78 Aligned_cols=204 Identities=15% Similarity=0.093 Sum_probs=146.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
.+++||||||+|+||.++++.|+++|++|++++|+.+.. ...........++.++.+|++|.+++.++++..
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKL----EALAARLPYPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 567999999999999999999999999999999954322 111111112347889999999999988887643
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+|||+||.... +...++....+++|+.++.++++.+.. .+. +++|++||...+.+.
T Consensus 80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~------------ 146 (263)
T PRK09072 80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPS-AMVVNVGSTFGSIGY------------ 146 (263)
T ss_pred CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CEEEEecChhhCcCC------------
Confidence 57999999997432 223345567889999999999988753 333 379999886543221
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.....|+.+|.+.+.+++.++.++ +++++++.||.+.++.... .. . .. . .........
T Consensus 147 ~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~----------~~-~-~~--~-----~~~~~~~~~ 207 (263)
T PRK09072 147 PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSE----------AV-Q-AL--N-----RALGNAMDD 207 (263)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhh----------hc-c-cc--c-----ccccCCCCC
Confidence 234679999999999988887664 7999999999987653211 00 0 00 0 000113567
Q ss_pred HHHHHHHHHHHHhhc
Q 011841 342 IDDVVKGCVGALDTA 356 (476)
Q Consensus 342 v~Dva~a~~~~l~~~ 356 (476)
++|+|++++.++++.
T Consensus 208 ~~~va~~i~~~~~~~ 222 (263)
T PRK09072 208 PEDVAAAVLQAIEKE 222 (263)
T ss_pred HHHHHHHHHHHHhCC
Confidence 899999999999874
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.75 E-value=4e-17 Score=158.63 Aligned_cols=225 Identities=17% Similarity=0.139 Sum_probs=153.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++++++||||+|+||.+++++|+++|++|++++|..+. ....... ....+..+.+|+.|.+++.++++.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~l~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAG----LQELEAA--HGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHhh--cCCceEEEEeccCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999985431 1111111 1236888999999999888877643
Q ss_pred --CccEEEEccccCCh-----hhhh----cChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCccccCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAM----QNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~----~~~~~~~~~nv~gt~~ll~~a~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|++|||||.... .... ++.+..+++|+.++..+++++...- .+.++|++||...+...
T Consensus 77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~------- 149 (262)
T TIGR03325 77 FGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPN------- 149 (262)
T ss_pred hCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCC-------
Confidence 67999999996321 1111 2356789999999999999886421 12378888887643211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeeCcccCCCCCCCCc-H-H----HH-HHHHHcCCceEEEeeC
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPDMA-Y-F----FF-TKDILQGKTIDVYKTQ 330 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~G~~~~~~~~-~-~----~~-~~~~~~g~~~~~~~~~ 330 (476)
.....|+.+|.+.+.+++.++.+++ ++++.|+||.+..+....... . . .+ .....+.. +
T Consensus 150 -----~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------ 217 (262)
T TIGR03325 150 -----GGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLKSV-L------ 217 (262)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCCccccccccccccccccchhhhhhhc-C------
Confidence 2345799999999999999988763 899999999998764321100 0 0 00 01111110 0
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcC--cCCCCCCCCCCCCCceEEEEcCC
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAG--KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~--~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
....+..++|+|++++.++.... ..+| +++.+.++
T Consensus 218 ----p~~r~~~p~eva~~~~~l~s~~~~~~~tG-----------~~i~vdgg 254 (262)
T TIGR03325 218 ----PIGRMPDAEEYTGAYVFFATRGDTVPATG-----------AVLNYDGG 254 (262)
T ss_pred ----CCCCCCChHHhhhheeeeecCCCcccccc-----------eEEEecCC
Confidence 11236678999999988886532 2233 77777665
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.9e-17 Score=156.52 Aligned_cols=206 Identities=18% Similarity=0.151 Sum_probs=143.6
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC--CHHHHHHhhccC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN--DAPLLTKLFDVV 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d~~~l~~~~~~~ 192 (476)
..++++|+||||+|+||.++++.|+++|++|++++|+.+..+....... .....++.++.+|+. +.+++.++++.+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIE--AAGGPQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHH--hcCCCCceEEEecccCCCHHHHHHHHHHH
Confidence 3578899999999999999999999999999999996532211111111 112236778888886 566665554432
Q ss_pred -----CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|+|||+||.... ....+..+..+++|+.++.++++++. +.+.. +||++||.......
T Consensus 87 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~-~iv~~ss~~~~~~~------ 159 (247)
T PRK08945 87 EEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAA-SLVFTSSSVGRQGR------ 159 (247)
T ss_pred HHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC-EEEEEccHhhcCCC------
Confidence 57999999987432 22334567789999999888888764 44544 89999997643221
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.....|+.+|.+.|.+++.++.++ ++++++++||.+-++-... ..... .
T Consensus 160 ------~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~~~~~----------~~~~~------------~ 211 (247)
T PRK08945 160 ------ANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTAMRAS----------AFPGE------------D 211 (247)
T ss_pred ------CCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCcchhh----------hcCcc------------c
Confidence 234579999999999999887765 6899999999886652110 00000 0
Q ss_pred eEeceeHHHHHHHHHHHHhhcC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
...+...+|++++++.++....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~ 233 (247)
T PRK08945 212 PQKLKTPEDIMPLYLYLMGDDS 233 (247)
T ss_pred ccCCCCHHHHHHHHHHHhCccc
Confidence 1135778999999999875443
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-17 Score=150.55 Aligned_cols=182 Identities=19% Similarity=0.163 Sum_probs=137.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-CccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~d~V 197 (476)
|+++||||+|+||.++++.|+++ ++|++++|+.. .+.+|++|.++++++++.. ++|+|
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~id~l 59 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG--------------------DVQVDITDPASIRALFEKVGKVDAV 59 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC--------------------ceEecCCChHHHHHHHHhcCCCCEE
Confidence 58999999999999999999999 99999998421 3689999999999998865 78999
Q ss_pred EEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHH
Q 011841 198 LHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (476)
Q Consensus 198 i~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (476)
|||||.... +...++.+..+++|+.++.++++++...- ...+|+++||.....+ ......|+.
T Consensus 60 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~------------~~~~~~Y~~ 127 (199)
T PRK07578 60 VSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEP------------IPGGASAAT 127 (199)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCC------------CCCchHHHH
Confidence 999997432 22344566788999999999999875421 1237999998664311 134578999
Q ss_pred HHHHHHHHHHHHHHH--hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHH
Q 011841 273 TKKAGEEIAHTYNHI--YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350 (476)
Q Consensus 273 sK~~~E~~~~~~~~~--~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~ 350 (476)
+|.+.+.+++.++.+ .|++++.|+||.+-.+... + +..+ . + ..++.++|+|+.++
T Consensus 128 sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~~-------~------~~~~--~-----~---~~~~~~~~~a~~~~ 184 (199)
T PRK07578 128 VNGALEGFVKAAALELPRGIRINVVSPTVLTESLEK-------Y------GPFF--P-----G---FEPVPAARVALAYV 184 (199)
T ss_pred HHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchhh-------h------hhcC--C-----C---CCCCCHHHHHHHHH
Confidence 999999999988775 4899999999998544210 0 0000 0 1 13578999999999
Q ss_pred HHHhhc
Q 011841 351 GALDTA 356 (476)
Q Consensus 351 ~~l~~~ 356 (476)
.+++..
T Consensus 185 ~~~~~~ 190 (199)
T PRK07578 185 RSVEGA 190 (199)
T ss_pred HHhccc
Confidence 999753
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.9e-16 Score=155.28 Aligned_cols=232 Identities=16% Similarity=0.130 Sum_probs=151.9
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
+|+++|||| |+||+++++.|. +|++|++++|+.+.. ......... ...+.++.+|++|.+++.++++..
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~----~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENL----EAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHH----HHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 468999998 799999999996 899999999964322 111111111 236888999999999998888642
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCCCC-----CC---CCCCCC--
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNT-----QV---PFSESH-- 261 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~~~-----~~---~~~E~~-- 261 (476)
++|+||||||... ...+++.++++|+.++.++++++... ..+.++|++||.+...... .. .++.++
T Consensus 76 ~id~li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (275)
T PRK06940 76 PVTGLVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELL 152 (275)
T ss_pred CCCEEEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhcccccccccccc
Confidence 5899999999743 23567889999999999999987543 1113677788765432110 00 000000
Q ss_pred ------C--CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC--CcHHHHHHHHHcCCceEEEe
Q 011841 262 ------R--TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYK 328 (476)
Q Consensus 262 ------~--~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~ 328 (476)
+ ...+...|+.+|.+.+.+++.++.++ |++++.|+||.+..+..... .........+....++
T Consensus 153 ~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~---- 228 (275)
T PRK06940 153 SLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDELNGPRGDGYRNMFAKSPA---- 228 (275)
T ss_pred ccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhhcCCchHHHHHHhhhCCc----
Confidence 0 00235679999999999998887664 79999999999988742210 0001112222221111
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++... ...+| +++.+.++.
T Consensus 229 --------~r~~~peeia~~~~fL~s~~~~~itG-----------~~i~vdgg~ 263 (275)
T PRK06940 229 --------GRPGTPDEIAALAEFLMGPRGSFITG-----------SDFLVDGGA 263 (275)
T ss_pred --------ccCCCHHHHHHHHHHHcCcccCcccC-----------ceEEEcCCe
Confidence 23677899999999888543 22333 677776653
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-16 Score=152.90 Aligned_cols=226 Identities=15% Similarity=0.091 Sum_probs=151.4
Q ss_pred CCCCEEEEECC--CChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGa--tG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..+++++|||| ++.||.++++.|+++|++|++++|+.. .+..+...... ...+.++.+|++|+++++++++.+
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~--~~~~~~~~~~~--~~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRA--LRLTERIAKRL--PEPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccc--hhHHHHHHHhc--CCCCcEEeCCCCCHHHHHHHHHHHH
Confidence 45789999999 899999999999999999999987431 11112221111 125778999999999988887642
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|++|||||.... +...++.+..+++|+.++..+++++...- ...++|++|+....
T Consensus 81 ~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~~~---------- 150 (256)
T PRK07889 81 EHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDATV---------- 150 (256)
T ss_pred HHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecccc----------
Confidence 68999999997421 11233445679999999988888765321 12479998754321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
..+....|+.+|.+.+.+++.++.++ |++++.|.||.+..+............+.+.+..++.
T Consensus 151 ---~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~----------- 216 (256)
T PRK07889 151 ---AWPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPLG----------- 216 (256)
T ss_pred ---cCCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCccc-----------
Confidence 01234679999999999999888764 7999999999998763221000011112222211110
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
+.+..++|+|++++.++..... .+| +++.+.++
T Consensus 217 ~~~~~p~evA~~v~~l~s~~~~~~tG-----------~~i~vdgg 250 (256)
T PRK07889 217 WDVKDPTPVARAVVALLSDWFPATTG-----------EIVHVDGG 250 (256)
T ss_pred cccCCHHHHHHHHHHHhCcccccccc-----------eEEEEcCc
Confidence 1356789999999998876433 232 77777654
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-16 Score=152.45 Aligned_cols=224 Identities=25% Similarity=0.230 Sum_probs=168.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||||++|++++++|+++|++|++++|+.+. ..... .+++++.+|+.+.+.+...++++ |.++
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~---------~~~~~-~~v~~~~~d~~~~~~l~~a~~G~--~~~~ 68 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEA---------AAALA-GGVEVVLGDLRDPKSLVAGAKGV--DGVL 68 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHH---------HHhhc-CCcEEEEeccCCHhHHHHHhccc--cEEE
Confidence 579999999999999999999999999999995432 12222 69999999999999999999998 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
++.+... . . . ...........+..+.+. .+.. +++++|...... .....|..+|...|
T Consensus 69 ~i~~~~~-~---~-~-~~~~~~~~~~~~~a~~a~-~~~~-~~~~~s~~~~~~--------------~~~~~~~~~~~~~e 126 (275)
T COG0702 69 LISGLLD-G---S-D-AFRAVQVTAVVRAAEAAG-AGVK-HGVSLSVLGADA--------------ASPSALARAKAAVE 126 (275)
T ss_pred EEecccc-c---c-c-chhHHHHHHHHHHHHHhc-CCce-EEEEeccCCCCC--------------CCccHHHHHHHHHH
Confidence 9887632 1 0 1 122223333344444444 3344 888888766421 34567999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
..+.+ .|+.++++|+..+|...... ........+.+.... +....+++..+|++.++..++..+..
T Consensus 127 ~~l~~----sg~~~t~lr~~~~~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~i~~~d~a~~~~~~l~~~~~ 192 (275)
T COG0702 127 AALRS----SGIPYTTLRRAAFYLGAGAA-----FIEAAEAAGLPVIPR-----GIGRLSPIAVDDVAEALAAALDAPAT 192 (275)
T ss_pred HHHHh----cCCCeEEEecCeeeeccchh-----HHHHHHhhCCceecC-----CCCceeeeEHHHHHHHHHHHhcCCcc
Confidence 99988 69999999977777653331 122333444444433 23378999999999999999998874
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccc
Q 011841 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK 402 (476)
Q Consensus 359 ~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~ 402 (476)
.. ++|.+++++..+..++++.+.+..|++...
T Consensus 193 ~~------------~~~~l~g~~~~~~~~~~~~l~~~~gr~~~~ 224 (275)
T COG0702 193 AG------------RTYELAGPEALTLAELASGLDYTIGRPVGL 224 (275)
T ss_pred cC------------cEEEccCCceecHHHHHHHHHHHhCCccee
Confidence 43 999999999999999999999999998765
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=150.55 Aligned_cols=204 Identities=18% Similarity=0.086 Sum_probs=154.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++..||||||+++||+.++.+++++|..+++.|.+.....+..+..+.. +.++.+.+|++|.+++.++.+.+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~----g~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI----GEAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc----CceeEEEecCCCHHHHHHHHHHHHHh
Confidence 57789999999999999999999999999999999887666655555443 37999999999999988776543
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.+.. +-+++..+..+++|+.+......+ +.+.+. +++|.++|++-+-+.
T Consensus 112 ~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~-GHIV~IaS~aG~~g~---------- 180 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNN-GHIVTIASVAGLFGP---------- 180 (300)
T ss_pred cCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCC-ceEEEehhhhcccCC----------
Confidence 68999999998553 333445567899999997766554 455554 499999997743221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh------CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY------GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~------gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.....|+.||.++..+.+.+..+. |++.+.++|+.+=.. |++ + .. .....
T Consensus 181 --~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tg----------mf~----~-~~-------~~~~l 236 (300)
T KOG1201|consen 181 --AGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTG----------MFD----G-AT-------PFPTL 236 (300)
T ss_pred --ccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecccc----------ccC----C-CC-------CCccc
Confidence 456789999999988877776542 699999999887422 111 1 11 02234
Q ss_pred EeceeHHHHHHHHHHHHhhcCc
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
...+.++.||+-++.++.+...
T Consensus 237 ~P~L~p~~va~~Iv~ai~~n~~ 258 (300)
T KOG1201|consen 237 APLLEPEYVAKRIVEAILTNQA 258 (300)
T ss_pred cCCCCHHHHHHHHHHHHHcCCc
Confidence 5678899999999999988665
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=151.26 Aligned_cols=206 Identities=17% Similarity=0.149 Sum_probs=145.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
++++|+||||+|+||.++++.|+++|++|++++|..+. ............+++++.+|++|.+++.++++..
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENK----LKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999995432 1112122222336889999999999988877643
Q ss_pred -CccEEEEccccCCh--hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccc-cCCCCCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV--RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSV-YGLNTQVPFSESHRTDQPA 267 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~--~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~v-yg~~~~~~~~E~~~~~~p~ 267 (476)
++|.+||++|.... ....++.+..++.|+.+...+++.+...- ...+||++||... ++. ..+.
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~------------~~~~ 147 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKA------------SPDQ 147 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccC------------CCCc
Confidence 36999999986321 11224456678999999888888765421 1137999998654 221 1345
Q ss_pred ChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHH
Q 011841 268 SLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (476)
..|+.+|.+.+.+++.+..++ |++++++|||+|+++..... . .. . . . .....++..+|
T Consensus 148 ~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~~-~----~~----~--~--~------~~~~~~~~~~~ 208 (238)
T PRK05786 148 LSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPER-N----WK----K--L--R------KLGDDMAPPED 208 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCchh-h----hh----h--h--c------cccCCCCCHHH
Confidence 679999999999988888664 89999999999998732110 0 00 0 0 0 00112567899
Q ss_pred HHHHHHHHHhhcC
Q 011841 345 VVKGCVGALDTAG 357 (476)
Q Consensus 345 va~a~~~~l~~~~ 357 (476)
++++++.++..+.
T Consensus 209 va~~~~~~~~~~~ 221 (238)
T PRK05786 209 FAKVIIWLLTDEA 221 (238)
T ss_pred HHHHHHHHhcccc
Confidence 9999999997644
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=153.24 Aligned_cols=225 Identities=13% Similarity=0.031 Sum_probs=154.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++++|+||||+|+||.++++.|+++|++|++++|+.+... ........ ..++.++.+|++|++++.++++..
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~----~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g 80 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALE----ALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAG 80 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH----HHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhC
Confidence 35789999999999999999999999999999998643221 11111111 236889999999999999888754
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|++|||||.... ....++.+..+++|+.+...+++++. +.+. +++|++||..... +.
T Consensus 81 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~iss~~~~~------------~~ 147 (259)
T PRK06125 81 DIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGS-GVIVNVIGAAGEN------------PD 147 (259)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEecCccccC------------CC
Confidence 58999999997432 23345567789999999988888753 3333 3899999865321 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCC--------CcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD--------MAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.....|+.+|.+.+.+++.++.+ .|++++.|+||.+..+..... .......+.+...-+
T Consensus 148 ~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 217 (259)
T PRK06125 148 ADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGLP---------- 217 (259)
T ss_pred CCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccCC----------
Confidence 34567999999999999988765 489999999999987621100 000001111111111
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
...+..++|+|++++.++..... .+| .++.+.++
T Consensus 218 --~~~~~~~~~va~~~~~l~~~~~~~~~G-----------~~i~vdgg 252 (259)
T PRK06125 218 --LGRPATPEEVADLVAFLASPRSGYTSG-----------TVVTVDGG 252 (259)
T ss_pred --cCCCcCHHHHHHHHHHHcCchhccccC-----------ceEEecCC
Confidence 12367889999999988865332 222 77777665
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-16 Score=156.86 Aligned_cols=224 Identities=14% Similarity=0.077 Sum_probs=147.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
++++++||||+++||.++++.|+++| ++|++++|+.+..++ ...... ....+.++.+|++|.++++++++..
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~----~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 77 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQ----AAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRE 77 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHH----HHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999999 999999986432211 111111 1236788999999999988877642
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCC-CCeEEEecCccccCCCC----CC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNP-QPSIVWASSSSVYGLNT----QV 255 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~-~~~~V~~SS~~vyg~~~----~~ 255 (476)
++|++|||||.... ..+.++.+..+++|+.++..+++++. +.+. .++||++||...+.... ..
T Consensus 78 ~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~ 157 (314)
T TIGR01289 78 SGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPP 157 (314)
T ss_pred hCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCC
Confidence 58999999997432 22345567789999999888876643 3321 24999999987653210 00
Q ss_pred C------------------CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEeeCcccC-CCCCCCCcH-
Q 011841 256 P------------------FSESHRTDQPASLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYG-PWGRPDMAY- 311 (476)
Q Consensus 256 ~------------------~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G-~~~~~~~~~- 311 (476)
+ +.+.. ...+...|+.||++...+.+++.++. |+.++.|+||.|.. +........
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~~~~~ 236 (314)
T TIGR01289 158 KANLGDLSGLAAGFKAPIAMIDGK-EFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLF 236 (314)
T ss_pred cccccccccccccCCCcccccCCC-CcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccccHHH
Confidence 0 01111 12456789999999888888887653 79999999999963 322211111
Q ss_pred HHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 312 FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 312 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
..++..+... + . ..+..+++.|+.++.++..+..
T Consensus 237 ~~~~~~~~~~--~--~---------~~~~~~~~~a~~l~~~~~~~~~ 270 (314)
T TIGR01289 237 RTLFPPFQKY--I--T---------KGYVSEEEAGERLAQVVSDPKL 270 (314)
T ss_pred HHHHHHHHHH--H--h---------ccccchhhhhhhhHHhhcCccc
Confidence 1111111100 0 0 1146689999999988876543
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=175.69 Aligned_cols=202 Identities=19% Similarity=0.170 Sum_probs=149.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+++||||+|+||.++++.|+++|++|++++|+.+..++...... ....++.++.+|++|.+++.++++.+
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 445 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIR---AKGGTAHAYTCDLTDSAAVDHTVKDILAE 445 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999996432221111111 11346889999999999998888743
Q ss_pred --CccEEEEccccCChh---hh---hcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGVR---YA---MQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~~---~~---~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||..... .. .++.+..+++|+.++.++++++ ++.+.. +||++||.+.+...
T Consensus 446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 516 (657)
T PRK07201 446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFG-HVVNVSSIGVQTNA-------- 516 (657)
T ss_pred cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-EEEEECChhhcCCC--------
Confidence 579999999974221 11 2356778999999988887765 344543 89999999887533
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+...+.. .+ + ..
T Consensus 517 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~~~~~~----------------~~---~----~~ 569 (657)
T PRK07201 517 ----PRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPMIAPTK----------------RY---N----NV 569 (657)
T ss_pred ----CCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccccCccc----------------cc---c----CC
Confidence 345679999999999999887664 899999999999887432210 01 0 01
Q ss_pred eceeHHHHHHHHHHHHhhc
Q 011841 338 DFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~ 356 (476)
..+.++|+|+.++..+...
T Consensus 570 ~~~~~~~~a~~i~~~~~~~ 588 (657)
T PRK07201 570 PTISPEEAADMVVRAIVEK 588 (657)
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 2467899999999988753
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-16 Score=149.00 Aligned_cols=191 Identities=18% Similarity=0.095 Sum_probs=141.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc---CCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV---VPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---~~~d 195 (476)
++++||||+|+||+++++.|+++|++|++++|..+.. .. ....+++++.+|++|.+.++++++. .++|
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~----~~-----~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d 72 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAAL----AA-----LQALGAEALALDVADPASVAGLAWKLDGEALD 72 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHH----HH-----HHhccceEEEecCCCHHHHHHHHHHhcCCCCC
Confidence 5899999999999999999999999999999854311 11 1123577899999999998887543 3589
Q ss_pred EEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCcc-ccCCCCCCCCCCCCCCCCC
Q 011841 196 HVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSS-VYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 196 ~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~~~--~~~~~~V~~SS~~-vyg~~~~~~~~E~~~~~~p 266 (476)
+|||++|.... ..+.++++..+++|+.++.++++++... ....++|++||.. +++.... .+
T Consensus 73 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~----------~~ 142 (222)
T PRK06953 73 AAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATG----------TT 142 (222)
T ss_pred EEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccC----------CC
Confidence 99999997522 2244566789999999999999988642 1123799998864 4442211 22
Q ss_pred CChHHHHHHHHHHHHHHHHHHh-CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHH
Q 011841 267 ASLYAATKKAGEEIAHTYNHIY-GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (476)
...|+.+|...+.+++.++.++ +++++.++||++..+.... ...+..+|.
T Consensus 143 ~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~~-----------------------------~~~~~~~~~ 193 (222)
T PRK06953 143 GWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGGA-----------------------------QAALDPAQS 193 (222)
T ss_pred ccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCCC-----------------------------CCCCCHHHH
Confidence 2469999999999999988765 7899999999998773210 013456899
Q ss_pred HHHHHHHHhhcC
Q 011841 346 VKGCVGALDTAG 357 (476)
Q Consensus 346 a~a~~~~l~~~~ 357 (476)
+..++.++....
T Consensus 194 ~~~~~~~~~~~~ 205 (222)
T PRK06953 194 VAGMRRVIAQAT 205 (222)
T ss_pred HHHHHHHHHhcC
Confidence 999998887653
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.2e-17 Score=156.61 Aligned_cols=165 Identities=20% Similarity=0.112 Sum_probs=126.1
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc------
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV------ 191 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~------ 191 (476)
+|+||||||+|+||++++++|+++|++|++++|+... .. .. ....++.++.+|+.|.++++++++.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~------~~-~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 72 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHP------SL-AA-AAGERLAEVELDLSDAAAAAAWLAGDLLAAF 72 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcch------hh-hh-ccCCeEEEEEeccCCHHHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999986431 11 11 1133688999999999998886543
Q ss_pred ---CCccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCC
Q 011841 192 ---VPFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 192 ---~~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
.++|++|||||.... ....++.+..+++|+.++..+++.+. +.+. ++||++||...+.+.
T Consensus 73 ~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~------- 144 (243)
T PRK07023 73 VDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAE-RRILHISSGAARNAY------- 144 (243)
T ss_pred ccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCC-CEEEEEeChhhcCCC-------
Confidence 257999999997432 11234556788999999777766554 3333 489999998765322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH--hCCcEEEEeeCcccCC
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHI--YGLALTGLRFFTVYGP 303 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~gi~~~ilRp~~v~G~ 303 (476)
.+...|+.+|.+.|.+++.+..+ .++++++|+||.+-.+
T Consensus 145 -----~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 145 -----AGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred -----CCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 45678999999999999988865 4799999999998655
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-17 Score=156.23 Aligned_cols=213 Identities=15% Similarity=0.054 Sum_probs=143.6
Q ss_pred EEEEECCCChhhHHHHHHHHH----CCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 120 TVLVTGAAGFVGSHCSLALKK----RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~----~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.|+||||+++||.+++++|++ +|++|++++|+.+..+........ ......+.++.+|++|.++++++++..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~-~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGA-ERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHh-cCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 589999999999999999997 799999999965433222222111 111336889999999999988877543
Q ss_pred ------CccEEEEccccCChh---h----hhcChHHHHHHHHHHHHHHHHHHHh----c-CCCCeEEEecCccccCCCCC
Q 011841 193 ------PFTHVLHLAAQAGVR---Y----AMQNPQSYVASNIAGFVNLLEVCKS----V-NPQPSIVWASSSSVYGLNTQ 254 (476)
Q Consensus 193 ------~~d~Vi~~Ag~~~~~---~----~~~~~~~~~~~nv~gt~~ll~~a~~----~-~~~~~~V~~SS~~vyg~~~~ 254 (476)
..|+||||||..... . ..++.+..+++|+.++..+++.+.. . +...+||++||...+.+.
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~-- 158 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPF-- 158 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCC--
Confidence 136999999974321 1 1234567899999998888776543 2 222489999997654221
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC---CcHHHHHHHHHcCCceEEEe
Q 011841 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD---MAYFFFTKDILQGKTIDVYK 328 (476)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~g~~~~~~~ 328 (476)
.....|+.+|.+.+.+++.++.+. |+++++++||.|-.+..... ..-+.....+....+
T Consensus 159 ----------~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~----- 223 (256)
T TIGR01500 159 ----------KGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQELKA----- 223 (256)
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHHHh-----
Confidence 345689999999999999988764 79999999999976521100 000001111111111
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
...+..++|+|++++.+++...
T Consensus 224 -------~~~~~~p~eva~~~~~l~~~~~ 245 (256)
T TIGR01500 224 -------KGKLVDPKVSAQKLLSLLEKDK 245 (256)
T ss_pred -------cCCCCCHHHHHHHHHHHHhcCC
Confidence 1126778999999999996543
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-16 Score=149.35 Aligned_cols=203 Identities=13% Similarity=0.104 Sum_probs=145.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--CccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--~~d~ 196 (476)
|+++||||+|+||+++++.|+++|++|++++|+.+.. .... ...+++++.+|++|+++++++++.. ++|+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~----~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~ 72 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDL----EVAA----KELDVDAIVCDNTDPASLEEARGLFPHHLDT 72 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHH----HhccCcEEecCCCCHHHHHHHHHHHhhcCcE
Confidence 5799999999999999999999999999999853211 1111 1124678899999999999888753 5799
Q ss_pred EEEccccCC----h---hh--hhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 197 VLHLAAQAG----V---RY--AMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 197 Vi~~Ag~~~----~---~~--~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
+|||||... . .. ..++.+..+++|+.++..+++++...- ...+||++||... .+
T Consensus 73 lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~~----------------~~ 136 (223)
T PRK05884 73 IVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPENP----------------PA 136 (223)
T ss_pred EEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCCC----------------CC
Confidence 999998421 0 11 234567889999999999999875421 1248999998651 23
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
...|+.+|.+.+.+++.++.++ |++++.|.||.+..+. .+.. ... . ...++
T Consensus 137 ~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~~----------~~~~-~~~----------p-----~~~~~ 190 (223)
T PRK05884 137 GSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQPG----------YDGL-SRT----------P-----PPVAA 190 (223)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCchh----------hhhc-cCC----------C-----CCCHH
Confidence 4679999999999999888764 7999999999986541 1110 000 0 12679
Q ss_pred HHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 344 DVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 344 Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
|+++++..++.... ..+| +++.+.++..
T Consensus 191 ~ia~~~~~l~s~~~~~v~G-----------~~i~vdgg~~ 219 (223)
T PRK05884 191 EIARLALFLTTPAARHITG-----------QTLHVSHGAL 219 (223)
T ss_pred HHHHHHHHHcCchhhccCC-----------cEEEeCCCee
Confidence 99999999876533 2233 7777766543
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=158.98 Aligned_cols=201 Identities=13% Similarity=0.104 Sum_probs=141.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC--HHHHHH---hhcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTK---LFDV 191 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~---~~~~ 191 (476)
.+++++||||+|+||++++++|+++|++|++++|+.+..+....+... .....++..+.+|+++ .+.+++ .+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~-~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQS-KYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH-HCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 468999999999999999999999999999999966433222222111 1112367788999985 343443 3444
Q ss_pred CCccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 192 VPFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
.++|++|||||.... +.+.++.+..+++|+.++..+++++. +.+. ++||++||.+.+...
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~-g~IV~iSS~a~~~~~--------- 200 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKK-GAIINIGSGAAIVIP--------- 200 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-cEEEEEechhhccCC---------
Confidence 456799999997532 22334456789999999999888764 3443 489999998764211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
..+....|+.+|.+.+.+.+.++.++ |+++++++||.|-.+.... ... . .-
T Consensus 201 -~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~~~~~------------~~~----------~---~~ 254 (320)
T PLN02780 201 -SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASI------------RRS----------S---FL 254 (320)
T ss_pred -CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecCcccc------------cCC----------C---CC
Confidence 01235789999999999999988775 7999999999997662110 000 0 01
Q ss_pred ceeHHHHHHHHHHHHh
Q 011841 339 FTYIDDVVKGCVGALD 354 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~ 354 (476)
....+++|+.++..+.
T Consensus 255 ~~~p~~~A~~~~~~~~ 270 (320)
T PLN02780 255 VPSSDGYARAALRWVG 270 (320)
T ss_pred CCCHHHHHHHHHHHhC
Confidence 2467999999998884
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-16 Score=150.08 Aligned_cols=200 Identities=17% Similarity=0.133 Sum_probs=139.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
|+|+||||++.||..++++|+ +|++|++++|+.+..++..++... .....+.++.+|++|.++++++++.. +
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 77 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQ--RGATSVHVLSFDAQDLDTHRELVKQTQELAGE 77 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHh--ccCCceEEEEcccCCHHHHHHHHHHHHHhcCC
Confidence 689999999999999999998 599999999965433222111111 11224788999999999988877643 6
Q ss_pred ccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
+|++|||||..... ...+...+..++|+.+...++.. ..+.+..++||++||.+.+-.. .
T Consensus 78 id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~------------~ 145 (246)
T PRK05599 78 ISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRAR------------R 145 (246)
T ss_pred CCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCC------------c
Confidence 89999999975331 12222345677888887765544 3333323489999997643211 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
....|+.+|.+.+.+++.++.+. |++++.+.||.|..+.... ..+. .. ...+
T Consensus 146 ~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~~~~~-------------~~~~--------~~----~~~p 200 (246)
T PRK05599 146 ANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGSMTTG-------------MKPA--------PM----SVYP 200 (246)
T ss_pred CCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccchhhcC-------------CCCC--------CC----CCCH
Confidence 45679999999999999888764 7999999999997752110 0000 00 1467
Q ss_pred HHHHHHHHHHHhhcCc
Q 011841 343 DDVVKGCVGALDTAGK 358 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~ 358 (476)
+|+|+.++.++.....
T Consensus 201 e~~a~~~~~~~~~~~~ 216 (246)
T PRK05599 201 RDVAAAVVSAITSSKR 216 (246)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999987543
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=151.39 Aligned_cols=220 Identities=11% Similarity=0.009 Sum_probs=143.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC------CchHHHHHHhhhc-CCceEEEEeecCCHHHHHHh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY------DPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKL 188 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~------~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~ 188 (476)
..+|+++||||+++||.+++++|+++|++|++++|+.... .+........... ...+.++.+|++|+++++++
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 5678999999999999999999999999999999975321 1111111111111 23577899999999999888
Q ss_pred hccC-----CccEEEEcc-ccCC-----h---hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccc-c
Q 011841 189 FDVV-----PFTHVLHLA-AQAG-----V---RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSV-Y 249 (476)
Q Consensus 189 ~~~~-----~~d~Vi~~A-g~~~-----~---~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~v-y 249 (476)
++.+ ++|++|||| |... . +...++....+++|+.+...+++++.. .+. .+||++||... +
T Consensus 86 ~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~-g~IV~isS~~~~~ 164 (305)
T PRK08303 86 VERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPG-GLVVEITDGTAEY 164 (305)
T ss_pred HHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCC-cEEEEECCccccc
Confidence 7653 689999999 6421 1 112334556788999998888776543 222 48999998543 2
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCC-cHHHHHHHHHcCCceE
Q 011841 250 GLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTID 325 (476)
Q Consensus 250 g~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~g~~~~ 325 (476)
+.. .......|+.+|.+.+.+.+.++.++ |++++.|.||.|-.+...... ............ .+
T Consensus 165 ~~~----------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~--~p 232 (305)
T PRK08303 165 NAT----------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSEMMLDAFGVTEENWRDALAK--EP 232 (305)
T ss_pred cCc----------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccHHHHHhhccCccchhhhhcc--cc
Confidence 111 01234569999999999999888765 799999999998665210000 000000000000 00
Q ss_pred EEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 326 VYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
. ..-+..++|+|.+++.++..+.
T Consensus 233 ~---------~~~~~~peevA~~v~fL~s~~~ 255 (305)
T PRK08303 233 H---------FAISETPRYVGRAVAALAADPD 255 (305)
T ss_pred c---------cccCCCHHHHHHHHHHHHcCcc
Confidence 0 1124468999999999987653
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=147.93 Aligned_cols=221 Identities=16% Similarity=0.113 Sum_probs=156.3
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc---
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV--- 191 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--- 191 (476)
+..+|+++||||+..||++++++|++.|++|++.+|..+..+...............+..+.+|+++.++++++++.
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999977655444444333333355799999999998887766542
Q ss_pred ---CCccEEEEccccCC-----hhhhhcChHHHHHHHHHH-HHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCC
Q 011841 192 ---VPFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAG-FVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 192 ---~~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~g-t~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
-++|++|||||... .+.+++.++..+++|+.| ...+..++. +.+. ..++++||+..+.....
T Consensus 85 ~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~g-g~I~~~ss~~~~~~~~~---- 159 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKG-GSIVNISSVAGVGPGPG---- 159 (270)
T ss_pred HhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCC-ceEEEEeccccccCCCC----
Confidence 26899999999844 355667788899999995 555555553 2233 37999998875433211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC---CcHHHHHHHHHcCCceEEEeeCCC
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD---MAYFFFTKDILQGKTIDVYKTQDD 332 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~ 332 (476)
.+ ..|+.+|.+.+++.+.++.++ |+++++|.||.|..+..... .....+.+.......
T Consensus 160 ------~~-~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~--------- 223 (270)
T KOG0725|consen 160 ------SG-VAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGA--------- 223 (270)
T ss_pred ------Cc-ccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccc---------
Confidence 22 689999999999999988664 89999999999998751100 011222221101111
Q ss_pred CceeEeceeHHHHHHHHHHHHhhcC
Q 011841 333 REVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 333 ~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
.....+.-++|++..+..++....
T Consensus 224 -~p~gr~g~~~eva~~~~fla~~~a 247 (270)
T KOG0725|consen 224 -VPLGRVGTPEEVAEAAAFLASDDA 247 (270)
T ss_pred -cccCCccCHHHHHHhHHhhcCccc
Confidence 112346678999999888876643
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=163.47 Aligned_cols=211 Identities=14% Similarity=0.101 Sum_probs=148.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++++||||+++||.++++.|+++|++|++++|..+.. ....... ...+..+.+|++|++++.++++..
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERA----RERADSL--GPDHHALAMDVSDEAQIREGFEQLHRE 76 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHh--CCceeEEEeccCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999854321 1111111 236778999999999998888653
Q ss_pred --CccEEEEccccCC------hhhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAG------VRYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~------~~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||... .+.+.++.+..+++|+.++..+++++... +...+||++||.......
T Consensus 77 ~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~-------- 148 (520)
T PRK06484 77 FGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVAL-------- 148 (520)
T ss_pred hCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCC--------
Confidence 5899999998732 12344567789999999999998887543 322389999997754322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHH-HHHHHcCCceEEEeeCCCCcee
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFF-TKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.....|+.+|.+.+.+++.++.++ ++++++|+||.|..+....-.....+ ...+....+ .
T Consensus 149 ----~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~ 212 (520)
T PRK06484 149 ----PKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQMVAELERAGKLDPSAVRSRIP------------L 212 (520)
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchhhhhhcccchhhhHHHHhcCC------------C
Confidence 345679999999999999887764 79999999999877632110000000 011111100 1
Q ss_pred EeceeHHHHHHHHHHHHhhc
Q 011841 337 RDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~ 356 (476)
..+..++|++++++.++...
T Consensus 213 ~~~~~~~~va~~v~~l~~~~ 232 (520)
T PRK06484 213 GRLGRPEEIAEAVFFLASDQ 232 (520)
T ss_pred CCCcCHHHHHHHHHHHhCcc
Confidence 12567899999999887653
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-15 Score=157.13 Aligned_cols=223 Identities=19% Similarity=0.130 Sum_probs=152.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..++++|||||+|+||..+++.|+++|++|++++|... .+...... ...+..++.+|++|.++++++++..
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~--~~~l~~~~----~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 281 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAA--GEALAAVA----NRVGGTALALDITAPDAPARIAEHLAER 281 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCcc--HHHHHHHH----HHcCCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999988422 11111111 1124568899999999988887643
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC---CCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP---QPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ....+..+..+++|+.++.++++++..... ..+||++||.+.+.+.
T Consensus 282 ~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~----------- 350 (450)
T PRK08261 282 HGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGN----------- 350 (450)
T ss_pred CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC-----------
Confidence 57999999997432 223455677899999999999999865322 2389999997654222
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.....|+.+|...+.+++.+..+ .|+.+++++||.+-.+.... ++...+...+. +.. .....
T Consensus 351 -~~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t~~~~~---~~~~~~~~~~~--~~~---------l~~~~ 415 (450)
T PRK08261 351 -RGQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIETQMTAA---IPFATREAGRR--MNS---------LQQGG 415 (450)
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcchhhhc---cchhHHHHHhh--cCC---------cCCCC
Confidence 34578999999988888887654 48999999999986542211 01111111110 100 01123
Q ss_pred eHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 341 YIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
-.+|++++++.++..... .+| +++++.++.
T Consensus 416 ~p~dva~~~~~l~s~~~~~itG-----------~~i~v~g~~ 446 (450)
T PRK08261 416 LPVDVAETIAWLASPASGGVTG-----------NVVRVCGQS 446 (450)
T ss_pred CHHHHHHHHHHHhChhhcCCCC-----------CEEEECCCc
Confidence 468999999988764322 222 788887654
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=151.26 Aligned_cols=188 Identities=19% Similarity=0.149 Sum_probs=142.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++++|||||.+||.+++++|+.+|.+|++.+|+.+...+..+.... ......+.++++|++|.++++++.+..
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~-~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQK-GKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 4668999999999999999999999999999999987555544444443 233458889999999999998877643
Q ss_pred --CccEEEEccccCChhh--hhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCC--CCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGVRY--AMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGL--NTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~~~--~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~--~~~~~~~E~~~ 262 (476)
++|++|||||.+.... +.+..+..+.+|..|...|.+. ++.... .|||++||... +. ..+..-.|...
T Consensus 112 ~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~-~RIV~vsS~~~-~~~~~~~~l~~~~~~ 189 (314)
T KOG1208|consen 112 EGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP-SRIVNVSSILG-GGKIDLKDLSGEKAK 189 (314)
T ss_pred CCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC-CCEEEEcCccc-cCccchhhccchhcc
Confidence 6899999999976644 4467899999999997766655 455554 49999999775 21 11111112211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~ 306 (476)
.......|+.||.+...+..++.++. |+.++.+.||.|.++.-.
T Consensus 190 ~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~l~ 235 (314)
T KOG1208|consen 190 LYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTGLS 235 (314)
T ss_pred CccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCccccccee
Confidence 12233359999999999999988776 699999999999988443
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.5e-15 Score=147.72 Aligned_cols=216 Identities=11% Similarity=0.021 Sum_probs=143.7
Q ss_pred CCCCEEEEECC--CChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh------hcC----CceEEEEeec--CC
Q 011841 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL------LQK----HQVFIVEGDL--ND 181 (476)
Q Consensus 116 ~~~~~VLVtGa--tG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~------~~~----~~v~~~~~Dl--~d 181 (476)
.++|++||||| +.+||.++++.|+++|++|++ +|....++.......... ... .....+.+|+ .+
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 85 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFDT 85 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecCc
Confidence 67899999999 799999999999999999998 665554433322222110 011 1246788898 33
Q ss_pred HH------------------HHHHhhccC-----CccEEEEccccCC------hhhhhcChHHHHHHHHHHHHHHHHHHH
Q 011841 182 AP------------------LLTKLFDVV-----PFTHVLHLAAQAG------VRYAMQNPQSYVASNIAGFVNLLEVCK 232 (476)
Q Consensus 182 ~~------------------~l~~~~~~~-----~~d~Vi~~Ag~~~------~~~~~~~~~~~~~~nv~gt~~ll~~a~ 232 (476)
.+ +++++++.+ ++|++|||||... .+.+.++....+++|+.++..+++++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~~ 165 (303)
T PLN02730 86 PEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHFG 165 (303)
T ss_pred cccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33 666666542 5799999997421 134456777899999999999988765
Q ss_pred hcC-CCCeEEEecCccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHh----CCcEEEEeeCcccCCCCC
Q 011841 233 SVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPA-SLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 233 ~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G~~~~ 306 (476)
..- ...+||++||....... +.. ..|+.+|.+.+.+.+.++.++ |++++.|.||.|-.+...
T Consensus 166 p~m~~~G~II~isS~a~~~~~------------p~~~~~Y~asKaAl~~l~~~la~El~~~~gIrVn~V~PG~v~T~~~~ 233 (303)
T PLN02730 166 PIMNPGGASISLTYIASERII------------PGYGGGMSSAKAALESDTRVLAFEAGRKYKIRVNTISAGPLGSRAAK 233 (303)
T ss_pred HHHhcCCEEEEEechhhcCCC------------CCCchhhHHHHHHHHHHHHHHHHHhCcCCCeEEEEEeeCCccCchhh
Confidence 421 11489999997643211 222 369999999999999988763 699999999999876432
Q ss_pred CCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 307 PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
................++ ..+..++|++.+++.++...
T Consensus 234 ~~~~~~~~~~~~~~~~pl------------~r~~~peevA~~~~fLaS~~ 271 (303)
T PLN02730 234 AIGFIDDMIEYSYANAPL------------QKELTADEVGNAAAFLASPL 271 (303)
T ss_pred cccccHHHHHHHHhcCCC------------CCCcCHHHHHHHHHHHhCcc
Confidence 100011122211111111 12467899999999998653
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-16 Score=146.40 Aligned_cols=169 Identities=19% Similarity=0.098 Sum_probs=125.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---Ccc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---PFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---~~d 195 (476)
++|+||||+|+||++++++|+++|++|++++|+....+ .. ....++.++.+|++|.++++++++.. ++|
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~----~~----~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id 73 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDT----AL----QALPGVHIEKLDMNDPASLDQLLQRLQGQRFD 73 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchH----HH----HhccccceEEcCCCCHHHHHHHHHHhhcCCCC
Confidence 68999999999999999999999999999999754321 11 11236788899999999888877743 689
Q ss_pred EEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCccccCCCCCCCCCCCCCCCCCC
Q 011841 196 HVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (476)
Q Consensus 196 ~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (476)
+||||||.... ....++....+.+|+.++..+++++...- ...+++++||.. |.... ++..+.
T Consensus 74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~--g~~~~-------~~~~~~ 144 (225)
T PRK08177 74 LLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQL--GSVEL-------PDGGEM 144 (225)
T ss_pred EEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCc--ccccc-------CCCCCc
Confidence 99999987432 12234455678899999999988875421 113788888753 22111 011234
Q ss_pred ChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCC
Q 011841 268 SLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW 304 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~ 304 (476)
..|+.+|.+.+.+++.++.++ +++++.++||.+-.+.
T Consensus 145 ~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~~ 184 (225)
T PRK08177 145 PLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTDM 184 (225)
T ss_pred cchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecCC
Confidence 569999999999999988764 6999999999997763
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=3e-15 Score=142.54 Aligned_cols=170 Identities=12% Similarity=0.109 Sum_probs=124.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++++||||++.||..++++|+++|++|++++|+.+..++....... ...++..+.+|+.|+++++++++..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSA---LTDNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999965433222221111 1235778889999999988877532
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|++|||||.... +.+.++....++.|+.++..+++.+ ++.+..+.||++||...+
T Consensus 80 ~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~----------- 148 (227)
T PRK08862 80 FNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH----------- 148 (227)
T ss_pred hCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC-----------
Confidence 68999999985322 1122334456777888877766554 333323489999986432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCC
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~ 303 (476)
.+...|+.+|.+.+.+.+.++.+ +|++++.|+||.+-.+
T Consensus 149 ----~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 149 ----QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 23467999999999999988876 4799999999998776
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.8e-15 Score=139.99 Aligned_cols=196 Identities=15% Similarity=0.070 Sum_probs=137.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Ccc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~d 195 (476)
|+|+||||+|+||++++++|+++| +.|+...|..... ....++.++++|++|.++++++.+.. ++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~~~~Dls~~~~~~~~~~~~~~id 69 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-----------FQHDNVQWHALDVTDEAEIKQLSEQFTQLD 69 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-----------cccCceEEEEecCCCHHHHHHHHHhcCCCC
Confidence 689999999999999999999985 5666666633210 12347889999999999888766543 579
Q ss_pred EEEEccccCChh----------hhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 196 HVLHLAAQAGVR----------YAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 196 ~Vi~~Ag~~~~~----------~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
+||||||..... ...+.....+++|+.++..+++.+.. .+. .+++++||.. +.... .
T Consensus 70 ~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~-~~i~~iss~~--~~~~~-----~- 140 (235)
T PRK09009 70 WLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSES-AKFAVISAKV--GSISD-----N- 140 (235)
T ss_pred EEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCC-ceEEEEeecc--ccccc-----C-
Confidence 999999985321 11123446789999998888777643 233 3899998743 11100 0
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
...+...|+.+|.+.+.+++.++.+ .+++++.++||.+.++.... +.... ..
T Consensus 141 -~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~----------~~~~~------------~~ 197 (235)
T PRK09009 141 -RLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKP----------FQQNV------------PK 197 (235)
T ss_pred -CCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcc----------hhhcc------------cc
Confidence 1134568999999999999988865 37899999999998774321 00111 11
Q ss_pred EeceeHHHHHHHHHHHHhhcC
Q 011841 337 RDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~ 357 (476)
..+..++|+|++++.++....
T Consensus 198 ~~~~~~~~~a~~~~~l~~~~~ 218 (235)
T PRK09009 198 GKLFTPEYVAQCLLGIIANAT 218 (235)
T ss_pred CCCCCHHHHHHHHHHHHHcCC
Confidence 225788999999999998764
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=133.99 Aligned_cols=168 Identities=21% Similarity=0.188 Sum_probs=125.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~----- 192 (476)
++++||||+|+||.++++.|+++|+ .|+++.|..............-.....++.++.+|+++++++.++++..
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999996 6888888654332221101111112346788999999999888877643
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccc-cCCCCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSV-YGLNTQVPFSESHRTDQPA 267 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~v-yg~~~~~~~~E~~~~~~p~ 267 (476)
++|+|||+||.... ....++.+..+++|+.++.++++++++.+.. ++|++||... ++. ...
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~ii~~ss~~~~~~~-------------~~~ 146 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLD-FFVLFSSVAGVLGN-------------PGQ 146 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcc-eEEEEccHHHhcCC-------------CCc
Confidence 46999999996432 2234556778999999999999999877764 8999998654 321 345
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCccc
Q 011841 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVY 301 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~ 301 (476)
..|+.+|...+.+++.+.+ .+++++.+.||.+-
T Consensus 147 ~~y~~sk~~~~~~~~~~~~-~~~~~~~~~~g~~~ 179 (180)
T smart00822 147 ANYAAANAFLDALAAHRRA-RGLPATSINWGAWA 179 (180)
T ss_pred hhhHHHHHHHHHHHHHHHh-cCCceEEEeecccc
Confidence 6799999999999966554 59999999988764
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=148.22 Aligned_cols=191 Identities=16% Similarity=0.078 Sum_probs=131.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++|+|+||||+|+||++++++|+++|++|++++|+.+.. ..... ....++..+.+|++|++++.+.+.+. |
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l----~~~~~--~~~~~v~~v~~Dvsd~~~v~~~l~~I--D 247 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKI----TLEIN--GEDLPVKTLHWQVGQEAALAELLEKV--D 247 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHh--hcCCCeEEEEeeCCCHHHHHHHhCCC--C
Confidence 5678999999999999999999999999999999854321 11111 11235778899999999999988765 9
Q ss_pred EEEEccccCCh-hhhhcChHHHHHHHHHHHHHHHHHHHh----cCC---CCeEEEecCccccCCCCCCCCCCCCCCCCCC
Q 011841 196 HVLHLAAQAGV-RYAMQNPQSYVASNIAGFVNLLEVCKS----VNP---QPSIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (476)
Q Consensus 196 ~Vi~~Ag~~~~-~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (476)
++|||||.... +.+.++.+..+++|+.++.++++++.. .+. +..+|++|++... + ...
T Consensus 248 iLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~~-------------~-~~~ 313 (406)
T PRK07424 248 ILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEVN-------------P-AFS 313 (406)
T ss_pred EEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcccccc-------------C-CCc
Confidence 99999987432 334456678899999999999998643 221 1135666543210 1 123
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHH
Q 011841 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (476)
..|+.+|.+.+.+..-.....++.+..+.||.+-.+- + + ...+.++|+|+
T Consensus 314 ~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~gp~~t~~----------------~-~-------------~~~~spe~vA~ 363 (406)
T PRK07424 314 PLYELSKRALGDLVTLRRLDAPCVVRKLILGPFKSNL----------------N-P-------------IGVMSADWVAK 363 (406)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCceEEEEeCCCcCCC----------------C-c-------------CCCCCHHHHHH
Confidence 4699999999887643223345666666665432110 0 0 01367899999
Q ss_pred HHHHHHhhcCc
Q 011841 348 GCVGALDTAGK 358 (476)
Q Consensus 348 a~~~~l~~~~~ 358 (476)
.++.+++....
T Consensus 364 ~il~~i~~~~~ 374 (406)
T PRK07424 364 QILKLAKRDFR 374 (406)
T ss_pred HHHHHHHCCCC
Confidence 99999977543
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.8e-15 Score=130.50 Aligned_cols=223 Identities=17% Similarity=0.062 Sum_probs=158.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.+.+.++||||+..||+++++.|.+.|++|.+.+++... .+.....+. ..+...+.+|+.++++++..+++.
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~-----A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k 86 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAA-----AEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEK 86 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhh-----HHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHH
Confidence 355789999999999999999999999999999986542 222222233 356778899999999988877643
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCC-CeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQ-PSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~-~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
.|++++||||.... +...+++++.+.+|+.|+..+.+++.+. +.. ..||++||+- |....
T Consensus 87 ~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIV--GkiGN------ 158 (256)
T KOG1200|consen 87 SLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIV--GKIGN------ 158 (256)
T ss_pred hcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhh--ccccc------
Confidence 78999999998432 3455778899999999999998886543 222 2799999964 22211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
-.++-|+++|.-.-.+.+..+++ .+|+++++.||.|-.|-... .-+..++.+...-|+..+
T Consensus 159 ----~GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~~--mp~~v~~ki~~~iPmgr~---------- 222 (256)
T KOG1200|consen 159 ----FGQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTEA--MPPKVLDKILGMIPMGRL---------- 222 (256)
T ss_pred ----ccchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhhh--cCHHHHHHHHccCCcccc----------
Confidence 34566888776544333333322 28999999999998885331 235678888888777665
Q ss_pred eceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
-..+|+|..++.+...... -+| ..+.++++
T Consensus 223 --G~~EevA~~V~fLAS~~ssYiTG-----------~t~evtGG 253 (256)
T KOG1200|consen 223 --GEAEEVANLVLFLASDASSYITG-----------TTLEVTGG 253 (256)
T ss_pred --CCHHHHHHHHHHHhccccccccc-----------eeEEEecc
Confidence 2359999988877733222 122 67777765
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-14 Score=135.06 Aligned_cols=190 Identities=15% Similarity=0.088 Sum_probs=128.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++++++||||+|+||++++++|+++|++|++++|+.... .. . .... ....+.+|++|.+++.+.+.. +|
T Consensus 12 l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~---~~---~-~~~~-~~~~~~~D~~~~~~~~~~~~~--iD 81 (245)
T PRK12367 12 WQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINN---SE---S-NDES-PNEWIKWECGKEESLDKQLAS--LD 81 (245)
T ss_pred hCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhh---hh---h-hccC-CCeEEEeeCCCHHHHHHhcCC--CC
Confidence 4668999999999999999999999999999999865211 01 0 1111 236788999999999988875 59
Q ss_pred EEEEccccCCh-hhhhcChHHHHHHHHHHHHHHHHHHHhcC------CCCeEEEecCccccCCCCCCCCCCCCCCCCCCC
Q 011841 196 HVLHLAAQAGV-RYAMQNPQSYVASNIAGFVNLLEVCKSVN------PQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (476)
Q Consensus 196 ~Vi~~Ag~~~~-~~~~~~~~~~~~~nv~gt~~ll~~a~~~~------~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (476)
++|||||.... ..+.++.+..+++|+.++..+++++...- ....++..||.+... + ....
T Consensus 82 ilVnnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~------------~-~~~~ 148 (245)
T PRK12367 82 VLILNHGINPGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ------------P-ALSP 148 (245)
T ss_pred EEEECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC------------C-CCCc
Confidence 99999997432 23456678899999999999999865421 111344444443221 0 1235
Q ss_pred hHHHHHHHHHHHH---HHHHH---HhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 269 LYAATKKAGEEIA---HTYNH---IYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 269 ~Y~~sK~~~E~~~---~~~~~---~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
.|+.+|.+.+.+. +++.. ..++.++.+.||.+..+.. + . ..+.+
T Consensus 149 ~Y~aSKaal~~~~~l~~~l~~e~~~~~i~v~~~~pg~~~t~~~-----------------~---~----------~~~~~ 198 (245)
T PRK12367 149 SYEISKRLIGQLVSLKKNLLDKNERKKLIIRKLILGPFRSELN-----------------P---I----------GIMSA 198 (245)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcccccEEEEecCCCcccccC-----------------c---c----------CCCCH
Confidence 6999999976433 23322 2478888888877643310 0 0 13567
Q ss_pred HHHHHHHHHHHhhcCc
Q 011841 343 DDVVKGCVGALDTAGK 358 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~ 358 (476)
+|+|+.++.++.+...
T Consensus 199 ~~vA~~i~~~~~~~~~ 214 (245)
T PRK12367 199 DFVAKQILDQANLGLY 214 (245)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 8888888888876544
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-15 Score=145.80 Aligned_cols=220 Identities=15% Similarity=0.098 Sum_probs=140.1
Q ss_pred EEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-----Cc
Q 011841 122 LVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-----PF 194 (476)
Q Consensus 122 LVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-----~~ 194 (476)
+||||+++||.+++++|+++| ++|++.+|+.+... ....... ....+.++.+|++|.++++++++.+ ++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~----~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i 76 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAE----RAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPL 76 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHH----HHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 699999999999999999999 99999998543211 1111111 1236788999999999988877642 57
Q ss_pred cEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCC-CCeEEEecCccccCCCC-C--CC---C-
Q 011841 195 THVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNP-QPSIVWASSSSVYGLNT-Q--VP---F- 257 (476)
Q Consensus 195 d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~-~~~~V~~SS~~vyg~~~-~--~~---~- 257 (476)
|+||||||.... ..+.++.+..+++|+.|+..+++.+. +.+. .++||++||...+-... . .+ +
T Consensus 77 D~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~ 156 (308)
T PLN00015 77 DVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 156 (308)
T ss_pred CEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchh
Confidence 999999997432 22345567899999999888876643 3331 24999999976531100 0 00 0
Q ss_pred ---------CCC-------CCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEeeCcccC-CCCCCCCcHHHHHH
Q 011841 258 ---------SES-------HRTDQPASLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYG-PWGRPDMAYFFFTK 316 (476)
Q Consensus 258 ---------~E~-------~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G-~~~~~~~~~~~~~~ 316 (476)
.+. .....+...|+.||.+.+.+++.+.+++ |+.+++|+||.|.. +.............
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~~~~~~~~~ 236 (308)
T PLN00015 157 DLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLF 236 (308)
T ss_pred hhhhhhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccccHHHHHHH
Confidence 000 0112355679999999777777777653 79999999999964 32221111100000
Q ss_pred HHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 317 DILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 317 ~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
......+ ...+..+++.|+.++.++....
T Consensus 237 ~~~~~~~------------~~~~~~pe~~a~~~~~l~~~~~ 265 (308)
T PLN00015 237 PPFQKYI------------TKGYVSEEEAGKRLAQVVSDPS 265 (308)
T ss_pred HHHHHHH------------hcccccHHHhhhhhhhhccccc
Confidence 0000000 0114678999999988876644
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-14 Score=124.43 Aligned_cols=203 Identities=16% Similarity=0.108 Sum_probs=146.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|.|+||||.+|++|+++.+++||+|++++|+.+... ..+++.+++.|+.|++++.+.+.+. |+||
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~-----------~~~~~~i~q~Difd~~~~a~~l~g~--DaVI 67 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLA-----------ARQGVTILQKDIFDLTSLASDLAGH--DAVI 67 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcc-----------ccccceeecccccChhhhHhhhcCC--ceEE
Confidence 78999999999999999999999999999999654221 1258889999999999999999988 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc-ccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS-VYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~-vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
..-+.... ++... .......|++..+.+++. |++.+..++ .|-... .-..+. +.-|..+|..++..+
T Consensus 68 sA~~~~~~----~~~~~----~~k~~~~li~~l~~agv~-RllVVGGAGSL~id~g--~rLvD~-p~fP~ey~~~A~~~a 135 (211)
T COG2910 68 SAFGAGAS----DNDEL----HSKSIEALIEALKGAGVP-RLLVVGGAGSLEIDEG--TRLVDT-PDFPAEYKPEALAQA 135 (211)
T ss_pred EeccCCCC----ChhHH----HHHHHHHHHHHHhhcCCe-eEEEEcCccceEEcCC--ceeecC-CCCchhHHHHHHHHH
Confidence 98776321 11111 222366788888888886 888887654 332221 111222 225666777777777
Q ss_pred HHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
| .+..+..+..++||.|-|..++-|+.+...+ .-|+..... ...--++|...|.|-+++.-++++.
T Consensus 136 e-~L~~Lr~~~~l~WTfvSPaa~f~PGerTg~y--------rlggD~ll~-----n~~G~SrIS~aDYAiA~lDe~E~~~ 201 (211)
T COG2910 136 E-FLDSLRAEKSLDWTFVSPAAFFEPGERTGNY--------RLGGDQLLV-----NAKGESRISYADYAIAVLDELEKPQ 201 (211)
T ss_pred H-HHHHHhhccCcceEEeCcHHhcCCccccCce--------EeccceEEE-----cCCCceeeeHHHHHHHHHHHHhccc
Confidence 7 4555666667999999999999997654322 235555454 1222368999999999999999998
Q ss_pred cCC
Q 011841 358 KST 360 (476)
Q Consensus 358 ~~~ 360 (476)
...
T Consensus 202 h~r 204 (211)
T COG2910 202 HIR 204 (211)
T ss_pred ccc
Confidence 775
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-15 Score=133.18 Aligned_cols=155 Identities=22% Similarity=0.195 Sum_probs=118.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
|+|+||||++.||..+++.|+++| +.|+++.|+. ..+......... ....++.++++|++|.++++++++.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~--~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSE--DSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSC--HHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecc--ccccccccccccccccccccccccccccccccccccccccccc
Confidence 589999999999999999999995 5788888850 011112221211 12368899999999999988888654
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (476)
++|+||||||.... +...+..+..+++|+.+...+.+++...+ .++||++||....-+. ...
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~~------------~~~ 145 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQG-GGKIVNISSIAGVRGS------------PGM 145 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHT-TEEEEEEEEGGGTSSS------------TTB
T ss_pred ccccccccccccccccccccccchhhhhccccccceeeeeeehheecc-ccceEEecchhhccCC------------CCC
Confidence 68999999998553 22345566899999999999999988744 3499999998764322 455
Q ss_pred ChHHHHHHHHHHHHHHHHHHh
Q 011841 268 SLYAATKKAGEEIAHTYNHIY 288 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~ 288 (476)
..|+.+|.+.+.+++.+++++
T Consensus 146 ~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 146 SAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999998763
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.3e-15 Score=140.64 Aligned_cols=217 Identities=17% Similarity=0.141 Sum_probs=153.1
Q ss_pred CCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc------CCccE
Q 011841 125 GAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV------VPFTH 196 (476)
Q Consensus 125 Gat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~------~~~d~ 196 (476)
|++ +.||..++++|+++|++|++++|+.+..+.... +.....+..++.+|++|+++++++++. -++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~----~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALE----ELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHH----HHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHH----HHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 666 999999999999999999999996643222222 222223455799999999998888764 36899
Q ss_pred EEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCCCCCCCCCCCCCCCCCC
Q 011841 197 VLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (476)
Q Consensus 197 Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (476)
+|||++.... +.+.++....+++|+.+...+++++.+. .....+|++||....... +..
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~------------~~~ 144 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPM------------PGY 144 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBS------------TTT
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccC------------ccc
Confidence 9999987543 2234556778999999999998887431 111379999988654322 345
Q ss_pred ChHHHHHHHHHHHHHHHHHH----hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 268 SLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
..|+.+|.+.+.+++.++.+ +||++++|+||.+..+..........+...+.+..|+. .+..++
T Consensus 145 ~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl~------------r~~~~~ 212 (241)
T PF13561_consen 145 SAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPLG------------RLGTPE 212 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTTS------------SHBEHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhccccccchhhhhhhhhccC------------CCcCHH
Confidence 58999999999998887654 48999999999998763111001233444444444331 256789
Q ss_pred HHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 344 DVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 344 Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
|+|++++.++.... .-+| +++.+.+|
T Consensus 213 evA~~v~fL~s~~a~~itG-----------~~i~vDGG 239 (241)
T PF13561_consen 213 EVANAVLFLASDAASYITG-----------QVIPVDGG 239 (241)
T ss_dssp HHHHHHHHHHSGGGTTGTS-----------EEEEESTT
T ss_pred HHHHHHHHHhCccccCccC-----------CeEEECCC
Confidence 99999999987652 3343 88888765
|
... |
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-13 Score=131.05 Aligned_cols=173 Identities=20% Similarity=0.177 Sum_probs=128.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC-CchHHHHHHhhhcC-CceEEEEeecCC-HHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY-DPSLKRARQKLLQK-HQVFIVEGDLND-APLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~-~~~~~~~~~~~~~~-~~v~~~~~Dl~d-~~~l~~~~~~~ 192 (476)
..+|+||||||++.||..+++.|+++|+.|+++.|..... .+....... ... ..+.+..+|+++ .++++.+++..
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dvs~~~~~v~~~~~~~ 80 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK--EAGGGRAAAVAADVSDDEESVEALVAAA 80 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH--hcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999988866532 111111111 111 367788899998 88877776543
Q ss_pred -----CccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||... .+...+..+..+++|+.+...+.+++...-.+.+||++||.... ..
T Consensus 81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~---------- 149 (251)
T COG1028 81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GG---------- 149 (251)
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CC----------
Confidence 4799999999743 23344667789999999988888855432222289999998764 22
Q ss_pred CCCC-CChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCC
Q 011841 263 TDQP-ASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (476)
Q Consensus 263 ~~~p-~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~ 303 (476)
.+ ...|+.+|.+.+.+.+.++.+ +|++++.|.||.+-.+
T Consensus 150 --~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~t~ 192 (251)
T COG1028 150 --PPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYIDTP 192 (251)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCCCc
Confidence 22 478999999999998888855 5899999999966644
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-13 Score=136.59 Aligned_cols=220 Identities=21% Similarity=0.141 Sum_probs=137.9
Q ss_pred CCCCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH-HHHHhh
Q 011841 111 ATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP-LLTKLF 189 (476)
Q Consensus 111 ~~~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~-~l~~~~ 189 (476)
....+.+.++|+|+||||.+|+.+++.|+++|+.|++++|+......... ......+...+..|...+. .+..+.
T Consensus 72 ~~~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~----~~~~d~~~~~v~~~~~~~~d~~~~~~ 147 (411)
T KOG1203|consen 72 PNNNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG----VFFVDLGLQNVEADVVTAIDILKKLV 147 (411)
T ss_pred CCCCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc----ccccccccceeeeccccccchhhhhh
Confidence 34455677899999999999999999999999999999995543222111 1222445666666655443 344444
Q ss_pred ccCC--ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCC
Q 011841 190 DVVP--FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPA 267 (476)
Q Consensus 190 ~~~~--~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~ 267 (476)
+... ..+++-++|...... +...-..++..|+.|++++|+.+|++ |||++|++..-..+.. .+...-.
T Consensus 148 ~~~~~~~~~v~~~~ggrp~~e---d~~~p~~VD~~g~knlvdA~~~aGvk-~~vlv~si~~~~~~~~------~~~~~~~ 217 (411)
T KOG1203|consen 148 EAVPKGVVIVIKGAGGRPEEE---DIVTPEKVDYEGTKNLVDACKKAGVK-RVVLVGSIGGTKFNQP------PNILLLN 217 (411)
T ss_pred hhccccceeEEecccCCCCcc---cCCCcceecHHHHHHHHHHHHHhCCc-eEEEEEeecCcccCCC------chhhhhh
Confidence 4432 256666665432211 22334567899999999999999998 9999988775322211 0010112
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHH
Q 011841 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (476)
..+-..|+.+|.++++ .|++++|||++...-........ .....+-... ++..--.+.-.|+|+
T Consensus 218 ~~~~~~k~~~e~~~~~----Sgl~ytiIR~g~~~~~~~~~~~~-------~~~~~~~~~~-----~~~~~~~i~r~~vae 281 (411)
T KOG1203|consen 218 GLVLKAKLKAEKFLQD----SGLPYTIIRPGGLEQDTGGQREV-------VVDDEKELLT-----VDGGAYSISRLDVAE 281 (411)
T ss_pred hhhhHHHHhHHHHHHh----cCCCcEEEeccccccCCCCccee-------cccCcccccc-----ccccceeeehhhHHH
Confidence 3445777777777775 79999999999987643321100 0001111111 111113677799999
Q ss_pred HHHHHHhhcCcCC
Q 011841 348 GCVGALDTAGKST 360 (476)
Q Consensus 348 a~~~~l~~~~~~~ 360 (476)
.++.++.++....
T Consensus 282 l~~~all~~~~~~ 294 (411)
T KOG1203|consen 282 LVAKALLNEAATF 294 (411)
T ss_pred HHHHHHhhhhhcc
Confidence 9999999987764
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-14 Score=129.72 Aligned_cols=168 Identities=16% Similarity=0.106 Sum_probs=127.1
Q ss_pred CCCCEEEEECCC-ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAA-GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGat-G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.+.++|||||++ |+||.+|++++.+.|+.|+++.|.-+..+. +....++...+.|+++++++.++...+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~--------L~~~~gl~~~kLDV~~~~~V~~v~~evr~ 76 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQ--------LAIQFGLKPYKLDVSKPEEVVTVSGEVRA 76 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhh--------HHHhhCCeeEEeccCChHHHHHHHHHHhh
Confidence 456899999864 899999999999999999999995542211 111348999999999999988765433
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~--~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... +....+-+..+++|+.|..++.++.... ..++.||++.|..+|-+.
T Consensus 77 ~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpf---------- 146 (289)
T KOG1209|consen 77 NPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPF---------- 146 (289)
T ss_pred CCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEecc----------
Confidence 68999999998433 3334455678999999988888775432 122479999998877422
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~ 303 (476)
+-.+.|.++|++...+.+.++-+ +|++++.+-+|.|-..
T Consensus 147 --pf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv~T~ 188 (289)
T KOG1209|consen 147 --PFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGVATD 188 (289)
T ss_pred --chhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccceecc
Confidence 44578999999999998887644 4888888888887654
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-14 Score=127.40 Aligned_cols=212 Identities=22% Similarity=0.233 Sum_probs=155.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCc-eEEEEeecCCHHHHHHhhccC-C
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ-VFIVEGDLNDAPLLTKLFDVV-P 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~-v~~~~~Dl~d~~~l~~~~~~~-~ 193 (476)
..++.|++||+..+||+.+++.|.+.|.+|+++.|.+. ...+-..+.+. ++.+.+|+.+.+.+.+++..+ .
T Consensus 5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a-------~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~p 77 (245)
T KOG1207|consen 5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEA-------NLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFP 77 (245)
T ss_pred ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHH-------HHHHHHhhCCcceeeeEecccHHHHHHHhhcccCc
Confidence 47889999999999999999999999999999999543 22222223334 888999999988888877654 6
Q ss_pred ccEEEEccccCC----hhhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAG----VRYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 194 ~d~Vi~~Ag~~~----~~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
+|.++||||..- .....++.+..|++|+.+..++.+.. ...+++..||++||.+..- +..
T Consensus 78 idgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R------------~~~ 145 (245)
T KOG1207|consen 78 IDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR------------PLD 145 (245)
T ss_pred hhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc------------ccC
Confidence 799999999732 24456777889999999998888873 3456666899999977432 124
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhC---CcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 266 PASLYAATKKAGEEIAHTYNHIYG---LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~g---i~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
..+.|+.+|.+.+.+.+.++-+.| |+++.+.|..|+...++.+-.-+.-.+.++..-| .-.|.-+
T Consensus 146 nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnWSDP~K~k~mL~riP------------l~rFaEV 213 (245)
T KOG1207|consen 146 NHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLDRIP------------LKRFAEV 213 (245)
T ss_pred CceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEecccccccCCchhccchhhhCc------------hhhhhHH
Confidence 557899999999999998887765 8999999999987643321000111111222222 2347789
Q ss_pred HHHHHHHHHHHhhcCc
Q 011841 343 DDVVKGCVGALDTAGK 358 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~ 358 (476)
+.++.++..+|.....
T Consensus 214 ~eVVnA~lfLLSd~ss 229 (245)
T KOG1207|consen 214 DEVVNAVLFLLSDNSS 229 (245)
T ss_pred HHHHhhheeeeecCcC
Confidence 9999999988866543
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=132.38 Aligned_cols=193 Identities=15% Similarity=0.088 Sum_probs=133.3
Q ss_pred HHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--CccEEEEccccCChhhhhc
Q 011841 134 CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFTHVLHLAAQAGVRYAMQ 211 (476)
Q Consensus 134 l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--~~d~Vi~~Ag~~~~~~~~~ 211 (476)
++++|+++|++|++++|+.+.. . ..+++.+|++|.+++.++++.. ++|+||||||... ..
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~---------~-----~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~ 62 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGM---------T-----LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TA 62 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchh---------h-----hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CC
Confidence 4789999999999999965421 0 1346789999999999988764 6899999999742 24
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCCCCCCCCCCC---------------CCCCCCCChHHHHHH
Q 011841 212 NPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSES---------------HRTDQPASLYAATKK 275 (476)
Q Consensus 212 ~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~---------------~~~~~p~~~Y~~sK~ 275 (476)
+.+..+++|+.++..+++++... ...++||++||.+.|+.....+..|. ..+..+...|+.+|.
T Consensus 63 ~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~ 142 (241)
T PRK12428 63 PVELVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKE 142 (241)
T ss_pred CHHHhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHH
Confidence 67889999999999999988653 11249999999998863221111111 012245688999999
Q ss_pred HHHHHHHHHH-HH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHH
Q 011841 276 AGEEIAHTYN-HI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (476)
Q Consensus 276 ~~E~~~~~~~-~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~ 351 (476)
+.+.+.+.++ .+ +|+++++|+||.|.++..... ............. .....+..++|+|++++.
T Consensus 143 a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~----------~~~~~~~~pe~va~~~~~ 210 (241)
T PRK12428 143 ALILWTMRQAQPWFGARGIRVNCVAPGPVFTPILGDF--RSMLGQERVDSDA----------KRMGRPATADEQAAVLVF 210 (241)
T ss_pred HHHHHHHHHHHHhhhccCeEEEEeecCCccCcccccc--hhhhhhHhhhhcc----------cccCCCCCHHHHHHHHHH
Confidence 9999998887 43 489999999999998843211 0000000000000 011225678999999999
Q ss_pred HHhhc
Q 011841 352 ALDTA 356 (476)
Q Consensus 352 ~l~~~ 356 (476)
++...
T Consensus 211 l~s~~ 215 (241)
T PRK12428 211 LCSDA 215 (241)
T ss_pred HcChh
Confidence 88543
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-12 Score=127.80 Aligned_cols=230 Identities=11% Similarity=0.022 Sum_probs=139.8
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCC------CCCCch-HH--------------HHHHhhhcCCce
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFN------SYYDPS-LK--------------RARQKLLQKHQV 172 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~------~~~~~~-~~--------------~~~~~~~~~~~v 172 (476)
..+|+++||||+ ..||+++++.|+++|++|++.++.. ...+.. .. +...-...-...
T Consensus 6 ~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~ 85 (299)
T PRK06300 6 LTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDTP 85 (299)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCCC
Confidence 578999999995 8999999999999999999977531 000000 00 000000000112
Q ss_pred EEEEeecCC--------HHHHHHhhccC-----CccEEEEccccCC------hhhhhcChHHHHHHHHHHHHHHHHHHHh
Q 011841 173 FIVEGDLND--------APLLTKLFDVV-----PFTHVLHLAAQAG------VRYAMQNPQSYVASNIAGFVNLLEVCKS 233 (476)
Q Consensus 173 ~~~~~Dl~d--------~~~l~~~~~~~-----~~d~Vi~~Ag~~~------~~~~~~~~~~~~~~nv~gt~~ll~~a~~ 233 (476)
+-+..|+.+ .++++++++.+ ++|++|||||... .+.+.++.+..+++|+.+...+++++..
T Consensus 86 ~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p 165 (299)
T PRK06300 86 EDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGP 165 (299)
T ss_pred EEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 223233322 12355554432 5899999997532 1334556678899999999999988754
Q ss_pred cC-CCCeEEEecCccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHHh----CCcEEEEeeCcccCCCCCC
Q 011841 234 VN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPA-SLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPWGRP 307 (476)
Q Consensus 234 ~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G~~~~~ 307 (476)
.- .+.++|++||....-.. +.. ..|+.+|.+.+.+.+.++.++ |++++.|.||.+-.+....
T Consensus 166 ~m~~~G~ii~iss~~~~~~~------------p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn~V~PG~v~T~~~~~ 233 (299)
T PRK06300 166 IMNPGGSTISLTYLASMRAV------------PGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVNTISAGPLASRAGKA 233 (299)
T ss_pred HhhcCCeEEEEeehhhcCcC------------CCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCccChhhhc
Confidence 31 12479999886542111 122 369999999999999888653 7999999999997763211
Q ss_pred CCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 308 DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
...............++ ..+...+|++++++.++.... ..+| +++.+.++
T Consensus 234 ~~~~~~~~~~~~~~~p~------------~r~~~peevA~~v~~L~s~~~~~itG-----------~~i~vdGG 284 (299)
T PRK06300 234 IGFIERMVDYYQDWAPL------------PEPMEAEQVGAAAAFLVSPLASAITG-----------ETLYVDHG 284 (299)
T ss_pred ccccHHHHHHHHhcCCC------------CCCcCHHHHHHHHHHHhCccccCCCC-----------CEEEECCC
Confidence 00011111111111111 124578999999998876533 2333 77777665
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-13 Score=127.80 Aligned_cols=168 Identities=13% Similarity=0.100 Sum_probs=127.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc-----
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD----- 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----- 190 (476)
..+|-|||||+....|+.+++.|.++|+.|++..-.++ ..+ .......+++...+..|++++++++++.+
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~-gae----~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~ 101 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEE-GAE----SLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKH 101 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCc-hHH----HHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHh
Confidence 46688999999999999999999999999999984322 111 11111226789999999999999887764
Q ss_pred --cCCccEEEEccccCCh----h-hhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCC
Q 011841 191 --VVPFTHVLHLAAQAGV----R-YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 191 --~~~~d~Vi~~Ag~~~~----~-~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
..+.-.||||||.... + ...++.....++|+.|+..+..+. +++. +|+|++||+.- ..
T Consensus 102 l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar--GRvVnvsS~~G--R~------- 170 (322)
T KOG1610|consen 102 LGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR--GRVVNVSSVLG--RV------- 170 (322)
T ss_pred cccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc--CeEEEeccccc--Cc-------
Confidence 2357899999996332 1 234677789999999988877764 3333 49999999773 21
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCC
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~ 303 (476)
..+...+|+.||++.|.+...++++ +|+++.+|-||. +-.
T Consensus 171 ---~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG~-f~T 213 (322)
T KOG1610|consen 171 ---ALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPGF-FKT 213 (322)
T ss_pred ---cCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccCc-ccc
Confidence 1145688999999999998888766 599999999994 443
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=125.56 Aligned_cols=219 Identities=17% Similarity=0.126 Sum_probs=149.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+|++++||+.|+||..++++|+++|..+.+++-+.+.. ......+...+...+.++++|+++..+++++|+..
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~--~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~ 80 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENP--EAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILAT 80 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCH--HHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHH
Confidence 4689999999999999999999999998877776544331 11122333445668999999999999998888754
Q ss_pred --CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHH----HHHHh--cCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLL----EVCKS--VNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll----~~a~~--~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
.+|++||+||... +++.+.+..+|+.|..+-. ....+ .|...-+|++||+.-..+.
T Consensus 81 fg~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~------------ 144 (261)
T KOG4169|consen 81 FGTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPM------------ 144 (261)
T ss_pred hCceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCcc------------
Confidence 5799999999844 5788999999988865544 44432 2344579999996633211
Q ss_pred CCCChHHHHHHHHHHHHHHHH-----HHhCCcEEEEeeCcccCCCC------CCCCcH-HHHHHHHHcCCceEEEeeCCC
Q 011841 265 QPASLYAATKKAGEEIAHTYN-----HIYGLALTGLRFFTVYGPWG------RPDMAY-FFFTKDILQGKTIDVYKTQDD 332 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~-----~~~gi~~~ilRp~~v~G~~~------~~~~~~-~~~~~~~~~g~~~~~~~~~~~ 332 (476)
+-...|+++|...-.+.++++ ++.|+++..+|||.+-..-. .....+ ..+.+.+. ..
T Consensus 145 p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~~~~~~~~e~~~~~~~~l~-~~---------- 213 (261)
T KOG4169|consen 145 PVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENIDASGGYLEYSDSIKEALE-RA---------- 213 (261)
T ss_pred ccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHHHhcCCcccccHHHHHHHH-Hc----------
Confidence 334569999998877777643 44599999999998643200 000011 11222222 11
Q ss_pred CceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 333 REVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 333 ~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.--...+++..++.+++.+... .+|-+..+.
T Consensus 214 -----~~q~~~~~a~~~v~aiE~~~NG-------------aiw~v~~g~ 244 (261)
T KOG4169|consen 214 -----PKQSPACCAINIVNAIEYPKNG-------------AIWKVDSGS 244 (261)
T ss_pred -----ccCCHHHHHHHHHHHHhhccCC-------------cEEEEecCc
Confidence 1234588999999999985542 778776654
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-13 Score=119.84 Aligned_cols=169 Identities=17% Similarity=0.166 Sum_probs=126.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc----
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV---- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---- 191 (476)
..+.+||||||+.+||..++++|.+.|.+|+++.|+.+ +......+.+.+....+|+.|.++.+++++.
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~-------~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~ 75 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEE-------RLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKE 75 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHH-------HHHHHHhcCcchheeeecccchhhHHHHHHHHHhh
Confidence 35679999999999999999999999999999999543 2333333456888999999999876665543
Q ss_pred C-CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 192 V-PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 192 ~-~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
. ..+++|||||.... +-..++.+..++.|+.++..|..+...+ ..+..||.+||.-.|-+..
T Consensus 76 ~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~-------- 147 (245)
T COG3967 76 YPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMA-------- 147 (245)
T ss_pred CCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCccc--------
Confidence 2 57999999998432 2233445678899999988887765432 2234799999987663321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCC
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~ 303 (476)
..-.|+.+|++...+...++++ .++.++=+-|+.|-.+
T Consensus 148 ----~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 148 ----STPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred ----ccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 2234999999999887776655 4788888889888765
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.4e-13 Score=121.11 Aligned_cols=203 Identities=15% Similarity=0.072 Sum_probs=138.9
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+.|+||||+.+||..|+++|++. |-+|++..+.+.+.. .++.......++++++++.|+++.++++++++.+
T Consensus 2 spksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a--~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~i 79 (249)
T KOG1611|consen 2 SPKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKA--ATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKI 79 (249)
T ss_pred CCccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHh--hHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhh
Confidence 3467999999999999999999986 677777776543211 2222223334779999999999998877776543
Q ss_pred ----CccEEEEccccCChhh-----hhcChHHHHHHHHHHHHHHHHHH----HhcCC---------C-CeEEEecCcccc
Q 011841 193 ----PFTHVLHLAAQAGVRY-----AMQNPQSYVASNIAGFVNLLEVC----KSVNP---------Q-PSIVWASSSSVY 249 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~a----~~~~~---------~-~~~V~~SS~~vy 249 (476)
++|++|+|||....-. ..+...+.+++|..++..+.+++ +++.. . ..||++||.+.-
T Consensus 80 Vg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s 159 (249)
T KOG1611|consen 80 VGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGS 159 (249)
T ss_pred cccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccc
Confidence 6799999999843311 12234568999999977766653 22211 1 169999986632
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEE
Q 011841 250 GLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDV 326 (476)
Q Consensus 250 g~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~ 326 (476)
... ....+...|..||.+...+.+++.-+. ++-++.++||+|-..-+.
T Consensus 160 --~~~-------~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~TDMgg-------------------- 210 (249)
T KOG1611|consen 160 --IGG-------FRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQTDMGG-------------------- 210 (249)
T ss_pred --cCC-------CCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEEcCCCC--------------------
Confidence 111 122577899999999999999987553 688899999999765322
Q ss_pred EeeCCCCceeEeceeHHHHHHHHHHHHhhcCcC
Q 011841 327 YKTQDDREVARDFTYIDDVVKGCVGALDTAGKS 359 (476)
Q Consensus 327 ~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~ 359 (476)
.+ .-+.+++-+.-++..+.+-...
T Consensus 211 ------~~---a~ltveeSts~l~~~i~kL~~~ 234 (249)
T KOG1611|consen 211 ------KK---AALTVEESTSKLLASINKLKNE 234 (249)
T ss_pred ------CC---cccchhhhHHHHHHHHHhcCcc
Confidence 11 1355677777777777664433
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-12 Score=117.26 Aligned_cols=165 Identities=21% Similarity=0.212 Sum_probs=115.4
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
++|||||.|.||..+++.|+++|. +|+++.|......+.......-......++++.+|++|++++.++++.. +
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 689999999999999999999975 7999998732222211112111122457999999999999999998765 6
Q ss_pred ccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc-ccCCCCCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS-VYGLNTQVPFSESHRTDQPAS 268 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~-vyg~~~~~~~~E~~~~~~p~~ 268 (476)
++.|||+||.... +.+.+.....+..-+.|+.+|.++....... .||.+||++ ++|. ..+.
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~-~~i~~SSis~~~G~-------------~gq~ 147 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLD-FFILFSSISSLLGG-------------PGQS 147 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTS-EEEEEEEHHHHTT--------------TTBH
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCC-eEEEECChhHhccC-------------cchH
Confidence 7999999998543 2233445567888899999999999887775 899999976 4543 3567
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeeCc
Q 011841 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299 (476)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~ 299 (476)
.|+.+-...+.+++.... .|.+++.|..+.
T Consensus 148 ~YaaAN~~lda~a~~~~~-~g~~~~sI~wg~ 177 (181)
T PF08659_consen 148 AYAAANAFLDALARQRRS-RGLPAVSINWGA 177 (181)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTSEEEEEEE-E
T ss_pred hHHHHHHHHHHHHHHHHh-CCCCEEEEEccc
Confidence 899999999998887655 489998887654
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-12 Score=121.33 Aligned_cols=209 Identities=16% Similarity=0.096 Sum_probs=148.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
.+|+||||+..||..++.++..+|+.|+++.|......+..+..... .....|.+..+|+.|.+++..++++. .
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~-~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELL-TQVEDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhh-hccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 58999999999999999999999999999999665443332222111 11123668999999999999999876 7
Q ss_pred ccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
+|.+|||||..-. +.+.+..+...++|..|+.+++.++.. .....+|+.+||...-- ...
T Consensus 113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~------------~i~ 180 (331)
T KOG1210|consen 113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAML------------GIY 180 (331)
T ss_pred cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhc------------Ccc
Confidence 8999999998443 334455667899999999999887543 22112788888865321 125
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCC-CcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 266 PASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
+.+.|..+|.+.-.++.++.++ +|+.++..-|+.+-.|+-... ...+.. ..+.. ++ .+.+.
T Consensus 181 GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGfE~En~tkP~~---------t~ii~---g~---ss~~~ 245 (331)
T KOG1210|consen 181 GYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGFERENKTKPEE---------TKIIE---GG---SSVIK 245 (331)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCccccccccCchh---------eeeec---CC---CCCcC
Confidence 6778999999888777777665 489999999999988864321 111111 12221 11 23478
Q ss_pred HHHHHHHHHHHHhh
Q 011841 342 IDDVVKGCVGALDT 355 (476)
Q Consensus 342 v~Dva~a~~~~l~~ 355 (476)
.+|+|++++.-+..
T Consensus 246 ~e~~a~~~~~~~~r 259 (331)
T KOG1210|consen 246 CEEMAKAIVKGMKR 259 (331)
T ss_pred HHHHHHHHHhHHhh
Confidence 89999999988766
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.6e-12 Score=150.82 Aligned_cols=176 Identities=17% Similarity=0.145 Sum_probs=133.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCC---------Cc-hHH------------------------
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYY---------DP-SLK------------------------ 160 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~---------~~-~~~------------------------ 160 (476)
..+++||||||+++||..++++|+++ |++|++++|..... ++ .++
T Consensus 1995 ~~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~ 2074 (2582)
T TIGR02813 1995 NSDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVR 2074 (2582)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhccc
Confidence 35789999999999999999999998 69999999972100 00 000
Q ss_pred ------H---HHHhh-hcCCceEEEEeecCCHHHHHHhhccC----CccEEEEccccCCh----hhhhcChHHHHHHHHH
Q 011841 161 ------R---ARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIA 222 (476)
Q Consensus 161 ------~---~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~ 222 (476)
+ ..... .....+.++.+|++|.++++++++.+ ++|+||||||.... +.+.++.+..+++|+.
T Consensus 2075 ~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~ 2154 (2582)
T TIGR02813 2075 PVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVD 2154 (2582)
T ss_pred ccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHH
Confidence 0 00011 11346889999999999988887654 58999999997432 3345667789999999
Q ss_pred HHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEeeCccc
Q 011841 223 GFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLRFFTVY 301 (476)
Q Consensus 223 gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v~ 301 (476)
|+.++++++.....+ +||++||...+-+. .....|+.+|...+.+.+.+..++ +++++.|.+|.+-
T Consensus 2155 G~~~Ll~al~~~~~~-~IV~~SSvag~~G~------------~gqs~YaaAkaaL~~la~~la~~~~~irV~sI~wG~wd 2221 (2582)
T TIGR02813 2155 GLLSLLAALNAENIK-LLALFSSAAGFYGN------------TGQSDYAMSNDILNKAALQLKALNPSAKVMSFNWGPWD 2221 (2582)
T ss_pred HHHHHHHHHHHhCCC-eEEEEechhhcCCC------------CCcHHHHHHHHHHHHHHHHHHHHcCCcEEEEEECCeec
Confidence 999999998876654 89999997643222 345789999999999998888776 6899999999887
Q ss_pred CCC
Q 011841 302 GPW 304 (476)
Q Consensus 302 G~~ 304 (476)
|+.
T Consensus 2222 tgm 2224 (2582)
T TIGR02813 2222 GGM 2224 (2582)
T ss_pred CCc
Confidence 653
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=116.86 Aligned_cols=171 Identities=18% Similarity=0.131 Sum_probs=128.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH----HHHhhccCCc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL----LTKLFDVVPF 194 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~----l~~~~~~~~~ 194 (476)
.-..|||||.+||+..+++|+++|.+|+++.|..++++...++...... -.++++..|.++.+. +.+.+.+.++
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~--vev~~i~~Dft~~~~~ye~i~~~l~~~~V 127 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK--VEVRIIAIDFTKGDEVYEKLLEKLAGLDV 127 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC--cEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence 5689999999999999999999999999999988776665555544433 368889999987654 6677778889
Q ss_pred cEEEEccccCC--hhhhhc----ChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAG--VRYAMQ----NPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 195 d~Vi~~Ag~~~--~~~~~~----~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
.++|||+|... +..-.+ .......+|+.++..+.+.. .+.+. +.||++||.+--- +.
T Consensus 128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~-G~IvnigS~ag~~------------p~ 194 (312)
T KOG1014|consen 128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKK-GIIVNIGSFAGLI------------PT 194 (312)
T ss_pred EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCC-ceEEEeccccccc------------cC
Confidence 99999999855 221112 23456778888877776654 33333 3799999977321 12
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCC
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW 304 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~ 304 (476)
+-.+.|+.+|...+.+...+.+++ |+.+-.+-|..|-++.
T Consensus 195 p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm 237 (312)
T KOG1014|consen 195 PLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKM 237 (312)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccc
Confidence 456889999999888877777665 7899999999988863
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-11 Score=108.59 Aligned_cols=213 Identities=16% Similarity=0.118 Sum_probs=150.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++...|||||...+|...+++|.++|..|.+++-.++......++. ..++.+...|++.++++..++..+
T Consensus 7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel------g~~~vf~padvtsekdv~aala~ak~k 80 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL------GGKVVFTPADVTSEKDVRAALAKAKAK 80 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh------CCceEEeccccCcHHHHHHHHHHHHhh
Confidence 46778999999999999999999999999999998776554433332 347899999999999999888654
Q ss_pred --CccEEEEccccCCh----------hhhhcChHHHHHHHHHHHHHHHHHHH-h--------cCCCCeEEEecCccccCC
Q 011841 193 --PFTHVLHLAAQAGV----------RYAMQNPQSYVASNIAGFVNLLEVCK-S--------VNPQPSIVWASSSSVYGL 251 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----------~~~~~~~~~~~~~nv~gt~~ll~~a~-~--------~~~~~~~V~~SS~~vyg~ 251 (476)
+.|+.+||||.... ....++....+++|+.||.|+++.-. . .|...-+|++.|.+.|.+
T Consensus 81 fgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdg 160 (260)
T KOG1199|consen 81 FGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDG 160 (260)
T ss_pred ccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecC
Confidence 67999999997321 22345667788999999999998632 1 111124888888888866
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHH----HHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEE
Q 011841 252 NTQVPFSESHRTDQPASLYAATKKAGEEI----AHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVY 327 (476)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~----~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~ 327 (476)
. ..+..|.++|.+.-.+ .+.++.. ||+++.+.||.+-.|-.. .++.-.+.++.. .++.+
T Consensus 161 q------------~gqaaysaskgaivgmtlpiardla~~-gir~~tiapglf~tplls---slpekv~~fla~-~ipfp 223 (260)
T KOG1199|consen 161 Q------------TGQAAYSASKGAIVGMTLPIARDLAGD-GIRFNTIAPGLFDTPLLS---SLPEKVKSFLAQ-LIPFP 223 (260)
T ss_pred c------------cchhhhhcccCceEeeechhhhhcccC-ceEEEeecccccCChhhh---hhhHHHHHHHHH-hCCCc
Confidence 5 3567899999875543 4444443 899999999887665321 112222222222 12222
Q ss_pred eeCCCCceeEeceeHHHHHHHHHHHHhhcCcCC
Q 011841 328 KTQDDREVARDFTYIDDVVKGCVGALDTAGKST 360 (476)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~ 360 (476)
...-|..+.+..+-.+++++--.+
T Consensus 224 ---------srlg~p~eyahlvqaiienp~lng 247 (260)
T KOG1199|consen 224 ---------SRLGHPHEYAHLVQAIIENPYLNG 247 (260)
T ss_pred ---------hhcCChHHHHHHHHHHHhCcccCC
Confidence 124567888888889999987654
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.6e-11 Score=108.77 Aligned_cols=204 Identities=15% Similarity=0.048 Sum_probs=142.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
-.+++.|++||.|.++++.....|+.|-++.|++.. ..... . ...+..+.+|.....-+...+.+. ..++
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k------~~l~s-w-~~~vswh~gnsfssn~~k~~l~g~--t~v~ 122 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENK------QTLSS-W-PTYVSWHRGNSFSSNPNKLKLSGP--TFVY 122 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCc------chhhC-C-CcccchhhccccccCcchhhhcCC--cccH
Confidence 367899999999999999999999999999986541 11111 1 125666777765544455555554 7788
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
-+++.. .+...+..+|-....+-+.++.++|++ +|+|+|... ||.. +..+. .|-.+|+++|
T Consensus 123 e~~ggf------gn~~~m~~ing~ani~a~kaa~~~gv~-~fvyISa~d-~~~~----------~~i~r-GY~~gKR~AE 183 (283)
T KOG4288|consen 123 EMMGGF------GNIILMDRINGTANINAVKAAAKAGVP-RFVYISAHD-FGLP----------PLIPR-GYIEGKREAE 183 (283)
T ss_pred HHhcCc------cchHHHHHhccHhhHHHHHHHHHcCCc-eEEEEEhhh-cCCC----------Cccch-hhhccchHHH
Confidence 777763 344556677888888889999999996 999999643 3222 11333 6999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCC-----CcHHHHHHHHHcCCc-----eEEEeeCCCCceeEeceeHHHHHHH
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPD-----MAYFFFTKDILQGKT-----IDVYKTQDDREVARDFTYIDDVVKG 348 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~-----~~~~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~v~v~Dva~a 348 (476)
.-+.. .++.+-++||||.+||.+.-.. ..+..-+..+.++.+ +++. +......+.+++||.+
T Consensus 184 ~Ell~---~~~~rgiilRPGFiyg~R~v~g~~~pL~~vg~pl~~~~~~a~k~~~kLp~l-----g~l~~ppvnve~VA~a 255 (283)
T KOG4288|consen 184 AELLK---KFRFRGIILRPGFIYGTRNVGGIKSPLHTVGEPLEMVLKFALKPLNKLPLL-----GPLLAPPVNVESVALA 255 (283)
T ss_pred HHHHH---hcCCCceeeccceeecccccCcccccHHhhhhhHHHHHHhhhchhhcCccc-----ccccCCCcCHHHHHHH
Confidence 76554 4578899999999999743211 112223333443332 3433 6777889999999999
Q ss_pred HHHHHhhcCcC
Q 011841 349 CVGALDTAGKS 359 (476)
Q Consensus 349 ~~~~l~~~~~~ 359 (476)
.+.++++|+-.
T Consensus 256 al~ai~dp~f~ 266 (283)
T KOG4288|consen 256 ALKAIEDPDFK 266 (283)
T ss_pred HHHhccCCCcC
Confidence 99999998765
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.5e-10 Score=103.76 Aligned_cols=202 Identities=15% Similarity=0.075 Sum_probs=136.0
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEe--------ecCCHHHHHHh
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG--------DLNDAPLLTKL 188 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~--------Dl~d~~~l~~~ 188 (476)
.++.+||||++..||..++..+.+++.+.....+... ..+..++.+..+ |+++...+.++
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~------------~a~~~~L~v~~gd~~v~~~g~~~e~~~l~al 72 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARL------------LAELEGLKVAYGDDFVHVVGDITEEQLLGAL 72 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhcc------------cccccceEEEecCCcceechHHHHHHHHHHH
Confidence 4578999999999999999999998865444332111 111224444443 44444444444
Q ss_pred hcc-----CCccEEEEccccCCh-------hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCC
Q 011841 189 FDV-----VPFTHVLHLAAQAGV-------RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLN 252 (476)
Q Consensus 189 ~~~-----~~~d~Vi~~Ag~~~~-------~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~ 252 (476)
++. -+.|.||||||..++ ....+..+.+++.|+.....|...+.. ..+++-+|++||.+...
T Consensus 73 ~e~~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~-- 150 (253)
T KOG1204|consen 73 REAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR-- 150 (253)
T ss_pred HhhhhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc--
Confidence 432 267999999998543 112334568999999999998887653 32345799999977532
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-h-CCcEEEEeeCcccCCCCC-------CCCcHHHHHHHHHcCCc
Q 011841 253 TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI-Y-GLALTGLRFFTVYGPWGR-------PDMAYFFFTKDILQGKT 323 (476)
Q Consensus 253 ~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-~-gi~~~ilRp~~v~G~~~~-------~~~~~~~~~~~~~~g~~ 323 (476)
+...+..|+.+|++.+.+++.++.+ + ++.+..++||.|-.+.+. .+...-.+++...+.+
T Consensus 151 ----------p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~mq~~ir~~~~~~p~~l~~f~el~~~~- 219 (253)
T KOG1204|consen 151 ----------PFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQMQVCIRETSRMTPADLKMFKELKESG- 219 (253)
T ss_pred ----------cccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccchhHHHHhhccCCCHHHHHHHHHHHhcC-
Confidence 2367889999999999999998755 3 899999999999776321 1112233444444333
Q ss_pred eEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 324 IDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
..+...+.++.+..++++..
T Consensus 220 --------------~ll~~~~~a~~l~~L~e~~~ 239 (253)
T KOG1204|consen 220 --------------QLLDPQVTAKVLAKLLEKGD 239 (253)
T ss_pred --------------CcCChhhHHHHHHHHHHhcC
Confidence 24556889999999988853
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-10 Score=98.71 Aligned_cols=157 Identities=16% Similarity=0.091 Sum_probs=121.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
+++|.++|.||||-.|+.+++.+++++ -+|+++.|..... + .....+..+..|....+++...+++.
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d-~---------at~k~v~q~~vDf~Kl~~~a~~~qg~- 84 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPD-P---------ATDKVVAQVEVDFSKLSQLATNEQGP- 84 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCC-c---------cccceeeeEEechHHHHHHHhhhcCC-
Confidence 567899999999999999999999998 3899999854211 1 11336777888888888888888877
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
|+.+.+-|..... ...+.+++++-+-...+.++|++.|++ +|+.+||.+.- ....-.|-+.
T Consensus 85 -dV~FcaLgTTRgk---aGadgfykvDhDyvl~~A~~AKe~Gck-~fvLvSS~GAd--------------~sSrFlY~k~ 145 (238)
T KOG4039|consen 85 -DVLFCALGTTRGK---AGADGFYKVDHDYVLQLAQAAKEKGCK-TFVLVSSAGAD--------------PSSRFLYMKM 145 (238)
T ss_pred -ceEEEeecccccc---cccCceEeechHHHHHHHHHHHhCCCe-EEEEEeccCCC--------------cccceeeeec
Confidence 9999988763221 234456667777778899999999997 99999998752 1445679999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCC
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG 305 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~ 305 (476)
|-+.|.-+.++.= -+++|+|||.+.|.+.
T Consensus 146 KGEvE~~v~eL~F---~~~~i~RPG~ll~~R~ 174 (238)
T KOG4039|consen 146 KGEVERDVIELDF---KHIIILRPGPLLGERT 174 (238)
T ss_pred cchhhhhhhhccc---cEEEEecCcceecccc
Confidence 9999998888642 2689999999999753
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-09 Score=98.93 Aligned_cols=184 Identities=14% Similarity=0.081 Sum_probs=125.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-----eEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-----GVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-----~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
..|.+||||++..||-.|+.+|++..+ .+++.+|+-++.++.....+.-+.. ...++++..|+++..++.++.+
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~ 81 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK 81 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence 457899999999999999999999865 3777788666555554444443332 3478999999999988777665
Q ss_pred cC-----CccEEEEccccCCh-------------------------------hhhhcChHHHHHHHHHHHHHHHHHHH--
Q 011841 191 VV-----PFTHVLHLAAQAGV-------------------------------RYAMQNPQSYVASNIAGFVNLLEVCK-- 232 (476)
Q Consensus 191 ~~-----~~d~Vi~~Ag~~~~-------------------------------~~~~~~~~~~~~~nv~gt~~ll~~a~-- 232 (476)
+. +.|.|+-|||.+.. ..+.++..++|+.||.|..-++....
T Consensus 82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl 161 (341)
T KOG1478|consen 82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL 161 (341)
T ss_pred HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence 43 57999999997432 11234556789999999877766432
Q ss_pred -hcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCC
Q 011841 233 -SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (476)
Q Consensus 233 -~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~ 303 (476)
-++..+++||+||...-..+ --.|+-.......+|.-||+..+-+--...+. .|+...++.||.....
T Consensus 162 l~~~~~~~lvwtSS~~a~kk~---lsleD~q~~kg~~pY~sSKrl~DlLh~A~~~~~~~~g~~qyvv~pg~~tt~ 233 (341)
T KOG1478|consen 162 LCHSDNPQLVWTSSRMARKKN---LSLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTTN 233 (341)
T ss_pred hhcCCCCeEEEEeeccccccc---CCHHHHhhhcCCCCcchhHHHHHHHHHHHhccccccchhhhcccCceeecc
Confidence 22333489999997653222 11122222256678999999988664444433 2677778888876543
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.3e-09 Score=95.36 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=65.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc----
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV---- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---- 191 (476)
..+++++||||+++||..+++.|+++|++|++++|..+.......... .....+.++.+|++|.+++.++++.
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEIT---NLGGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999986432211111111 1123567889999999988887643
Q ss_pred -CCccEEEEccccCC
Q 011841 192 -VPFTHVLHLAAQAG 205 (476)
Q Consensus 192 -~~~d~Vi~~Ag~~~ 205 (476)
-++|++|||||...
T Consensus 91 ~G~iDilVnnAG~~~ 105 (169)
T PRK06720 91 FSRIDMLFQNAGLYK 105 (169)
T ss_pred cCCCCEEEECCCcCC
Confidence 26899999999744
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.9e-09 Score=102.76 Aligned_cols=177 Identities=18% Similarity=0.132 Sum_probs=123.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.++++|+|+|+.|.||+.++..|+.++ ++++++|+... .. ......+. .......+.+|+.++.+.++++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~--~g-~a~Dl~~~----~~~~~v~~~td~~~~~~~l~ga- 77 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA--PG-VAADLSHI----DTPAKVTGYADGELWEKALRGA- 77 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC--cc-cccchhhc----CcCceEEEecCCCchHHHhCCC-
Confidence 456799999999999999999998655 68999998211 11 00011111 1123345666666667788888
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCC--CCCCCCCCCCCCChHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQV--PFSESHRTDQPASLYA 271 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~--~~~E~~~~~~p~~~Y~ 271 (476)
|+||++||.... ...+..+.+..|+..+.++++.++++++. ++|+++|-.+-....-. ...+.... +|...||
T Consensus 78 -DvVVitaG~~~~--~~~tR~dll~~N~~i~~~i~~~i~~~~~~-~iviv~SNPvdv~~~~~~~~~~~~sg~-p~~~viG 152 (321)
T PTZ00325 78 -DLVLICAGVPRK--PGMTRDDLFNTNAPIVRDLVAAVASSAPK-AIVGIVSNPVNSTVPIAAETLKKAGVY-DPRKLFG 152 (321)
T ss_pred -CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecCcHHHHHHHHHhhhhhccCC-Chhheee
Confidence 999999998432 22456788999999999999999999987 99999996653322110 01122222 5666787
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
.+-+..-++-..+++..++....|+ ++|+|..++
T Consensus 153 ~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd 186 (321)
T PTZ00325 153 VTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSG 186 (321)
T ss_pred chhHHHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence 7767777777778888899988888 899998655
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.9e-09 Score=95.13 Aligned_cols=106 Identities=19% Similarity=0.236 Sum_probs=78.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
|+++||||+|++|. +++.|+++|++|++++|+.+. .............+.++.+|+.|.+++.++++++ +
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~----~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~ 75 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVK----LENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGP 75 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHH----HHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 68999999988876 999999999999999985321 1111111212347888999999999999888754 5
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC--C-eEEEecCcc
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--P-SIVWASSSS 247 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~--~-~~V~~SS~~ 247 (476)
+|++|+.+ .+.++.++..+|++.+++ + +||++=.+.
T Consensus 76 id~lv~~v------------------h~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~ 114 (177)
T PRK08309 76 FDLAVAWI------------------HSSAKDALSVVCRELDGSSETYRLFHVLGSA 114 (177)
T ss_pred CeEEEEec------------------cccchhhHHHHHHHHccCCCCceEEEEeCCc
Confidence 68888765 445678999999999963 1 677775433
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-07 Score=85.54 Aligned_cols=227 Identities=14% Similarity=0.110 Sum_probs=137.9
Q ss_pred CCCCEEEEECC--CChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcC-CceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK-HQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGa--tG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.++|++||+|- +..|+..|++.|.++|.++.....+. .+++...++.+. ..-.+++||+++.++++++|+..
T Consensus 4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-----~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i 78 (259)
T COG0623 4 LEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-----RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATI 78 (259)
T ss_pred cCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-----HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHH
Confidence 57899999984 46899999999999999998887533 223222233322 23568999999999999999865
Q ss_pred -----CccEEEEccccCChh-----h---hhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGVR-----Y---AMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~~-----~---~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|.|||+.|...-+ + +.++.....++-.-....|..+|+..- ....+|.++ |-+...
T Consensus 79 ~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLt----Ylgs~r---- 150 (259)
T COG0623 79 KKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLT----YLGSER---- 150 (259)
T ss_pred HHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE----ecccee----
Confidence 689999999985421 1 222222233333333334444444311 112456554 221111
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.-+..+..+.+|.+.|.-++-++.+. |++++.|--|.|=.--...-..+..++....+..|+
T Consensus 151 ----~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl----------- 215 (259)
T COG0623 151 ----VVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPL----------- 215 (259)
T ss_pred ----ecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCc-----------
Confidence 11455689999999999999888665 578887776555221111111123333333333333
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
+.-+.++||....+.++..-.. .+| ++.++.++-.
T Consensus 216 -~r~vt~eeVG~tA~fLlSdLssgiTG-----------ei~yVD~G~~ 251 (259)
T COG0623 216 -RRNVTIEEVGNTAAFLLSDLSSGITG-----------EIIYVDSGYH 251 (259)
T ss_pred -cCCCCHHHhhhhHHHHhcchhccccc-----------ceEEEcCCce
Confidence 3346689999987777755332 222 7887877654
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=94.76 Aligned_cols=177 Identities=15% Similarity=0.021 Sum_probs=108.9
Q ss_pred CCCCEEEEECCCChhhHH--HHHHHHHCCCeEEEEeCCCCCCCch-------HHHHHHhhhc--CCceEEEEeecCCHHH
Q 011841 116 PNGMTVLVTGAAGFVGSH--CSLALKKRGDGVLGLDNFNSYYDPS-------LKRARQKLLQ--KHQVFIVEGDLNDAPL 184 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~--l~~~L~~~G~~V~~~~R~~~~~~~~-------~~~~~~~~~~--~~~v~~~~~Dl~d~~~ 184 (476)
..+|++||||+++.||.+ +++.| ++|+.|+++++..+..... ......+... ...+..+.+|+++.++
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 567999999999999999 89999 9999999988643221110 0001111111 2246788999999999
Q ss_pred HHHhhccC-----CccEEEEccccCCh-h-----------------hh-----------------hcCh-HHHHHHHHHH
Q 011841 185 LTKLFDVV-----PFTHVLHLAAQAGV-R-----------------YA-----------------MQNP-QSYVASNIAG 223 (476)
Q Consensus 185 l~~~~~~~-----~~d~Vi~~Ag~~~~-~-----------------~~-----------------~~~~-~~~~~~nv~g 223 (476)
++++++.+ ++|+|||++|...- + .. .-.. +-...+.+.|
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv~vMg 197 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTVKVMG 197 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHHHhhc
Confidence 88887643 68999999997421 0 00 0000 1122344555
Q ss_pred HHHHHHHH---HhcCC---CCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEE
Q 011841 224 FVNLLEVC---KSVNP---QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTG 294 (476)
Q Consensus 224 t~~ll~~a---~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~i 294 (476)
.+....++ ...+. ..++|-.|..+ .. ...+....+.-|.+|.+.|..++.++.+. |+++++
T Consensus 198 gedw~~Wi~al~~a~lla~g~~~va~TY~G---~~-------~t~p~Y~~g~mG~AKa~LE~~~r~La~~L~~~giran~ 267 (398)
T PRK13656 198 GEDWELWIDALDEAGVLAEGAKTVAYSYIG---PE-------LTHPIYWDGTIGKAKKDLDRTALALNEKLAAKGGDAYV 267 (398)
T ss_pred cchHHHHHHHHHhcccccCCcEEEEEecCC---cc-------eeecccCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEE
Confidence 53333332 22221 12566666433 11 11111222467999999999999988765 688998
Q ss_pred EeeCcccCC
Q 011841 295 LRFFTVYGP 303 (476)
Q Consensus 295 lRp~~v~G~ 303 (476)
+-.+.+...
T Consensus 268 i~~g~~~T~ 276 (398)
T PRK13656 268 SVLKAVVTQ 276 (398)
T ss_pred EecCcccch
Confidence 887777654
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-08 Score=74.67 Aligned_cols=60 Identities=23% Similarity=0.318 Sum_probs=40.7
Q ss_pred HHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 391 ILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 391 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
.++++.|++.++.+.+ .+.+|.....+|++||+++|||+|+++|+++|++.++|++++..
T Consensus 1 A~e~vtG~~i~~~~~~-rR~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~ 60 (62)
T PF13950_consen 1 AFEKVTGKKIPVEYAP-RRPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNPN 60 (62)
T ss_dssp HHHHHHTS---EEEE----TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHCCCCCceECC-CCCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcC
Confidence 3688999999888776 67999999999999999999999999999999999999987754
|
... |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-08 Score=98.49 Aligned_cols=175 Identities=17% Similarity=0.100 Sum_probs=120.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+|+|||++|.||..++..|+.++ .+++++|+.... ... ....+. .......++.+.+++.+.++++ |
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~-g~a--~Dl~~~----~~~~~i~~~~~~~d~~~~l~~a--D 88 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP-GVA--ADVSHI----NTPAQVRGFLGDDQLGDALKGA--D 88 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC-eeE--chhhhC----CcCceEEEEeCCCCHHHHcCCC--C
Confidence 3599999999999999999999766 489999985511 100 011110 1122333544455577888888 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCC--CCCCCCCCCCCCCCCChHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN--TQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~--~~~~~~E~~~~~~p~~~Y~~s 273 (476)
+|||.||.... ...+..+.+..|+..+.++++.+++.+.. .+|+++|--+-+.. ......+.. ..+|...||.+
T Consensus 89 iVVitAG~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~-aivivvSNPvD~~~~i~t~~~~~~s-~~p~~~viG~~ 164 (323)
T PLN00106 89 LVIIPAGVPRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPN-ALVNIISNPVNSTVPIAAEVLKKAG-VYDPKKLFGVT 164 (323)
T ss_pred EEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHHcC-CCCcceEEEEe
Confidence 99999998432 23467789999999999999999999976 77777764331100 000011111 22567788889
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
++..+++...+++.+|++...|. +.|+|..+.
T Consensus 165 ~LDs~Rl~~~lA~~lgv~~~~V~-~~ViGeHg~ 196 (323)
T PLN00106 165 TLDVVRANTFVAEKKGLDPADVD-VPVVGGHAG 196 (323)
T ss_pred cchHHHHHHHHHHHhCCChhheE-EEEEEeCCC
Confidence 99999999999999999888884 677887533
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.3e-07 Score=91.74 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=104.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC-------CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG-------DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G-------~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
.+|+||||+|+||++++..|+..+ .+|+++++.... +. ......+.... ......|+.+..++.+.+++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~-~~g~~~Dl~d~--~~~~~~~~~~~~~~~~~l~~ 78 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KA-LEGVVMELQDC--AFPLLKSVVATTDPEEAFKD 78 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-cc-ccceeeehhhc--cccccCCceecCCHHHHhCC
Confidence 579999999999999999999854 589999985421 00 00000000000 00111233334566777888
Q ss_pred CCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCcc---ccCCCCCCCCCCCCCCCCCC
Q 011841 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS---VYGLNTQVPFSESHRTDQPA 267 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~---vyg~~~~~~~~E~~~~~~p~ 267 (476)
+ |+|||+||.... ...+..+.++.|+.-...+.+...+.. ....+|.+|.-. .|- ..+.....++.
T Consensus 79 a--DiVI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~------~~k~~~~~~~~ 148 (325)
T cd01336 79 V--DVAILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALI------LLKYAPSIPKE 148 (325)
T ss_pred C--CEEEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHH------HHHHcCCCCHH
Confidence 7 999999998432 335568899999999999998888874 343566666411 000 00110010111
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
..=..+.+..-++-..+++..+++...++-..|+|..+.
T Consensus 149 ~ig~gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~ 187 (325)
T cd01336 149 NFTALTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS 187 (325)
T ss_pred HEEeeehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC
Confidence 111223444445555566667888888877778887554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-07 Score=88.33 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=58.9
Q ss_pred CCCEEEEECCC----------------ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC
Q 011841 117 NGMTVLVTGAA----------------GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180 (476)
Q Consensus 117 ~~~~VLVtGat----------------G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~ 180 (476)
.+|+||||+|. ||+|++|+++|+++|++|+++++........ ......+..+.+|..
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~-------~~~~~~~~~V~s~~d 74 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPND-------INNQLELHPFEGIID 74 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcc-------cCCceeEEEEecHHH
Confidence 57899999775 9999999999999999999998743211110 001123445566433
Q ss_pred CHHHHHHhhccCCccEEEEccccCCh
Q 011841 181 DAPLLTKLFDVVPFTHVLHLAAQAGV 206 (476)
Q Consensus 181 d~~~l~~~~~~~~~d~Vi~~Ag~~~~ 206 (476)
..+.+.++++..++|+|||+||..+.
T Consensus 75 ~~~~l~~~~~~~~~D~VIH~AAvsD~ 100 (229)
T PRK09620 75 LQDKMKSIITHEKVDAVIMAAAGSDW 100 (229)
T ss_pred HHHHHHHHhcccCCCEEEECccccce
Confidence 34678888876678999999999554
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.1e-07 Score=91.22 Aligned_cols=98 Identities=29% Similarity=0.248 Sum_probs=77.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
+|+|||.|| |+||+.++..|+++| .+|++++|..+ +..+.......+++.++.|+.|.+.+.+++++. |+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~------~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~--d~ 71 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKE------KCARIAELIGGKVEALQVDAADVDALVALIKDF--DL 71 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHH------HHHHHHhhccccceeEEecccChHHHHHHHhcC--CE
Confidence 478999998 999999999999999 89999999543 111222222348999999999999999999988 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|||++...- ..+++++|.++|+ ++|=+|
T Consensus 72 VIn~~p~~~------------------~~~i~ka~i~~gv--~yvDts 99 (389)
T COG1748 72 VINAAPPFV------------------DLTILKACIKTGV--DYVDTS 99 (389)
T ss_pred EEEeCCchh------------------hHHHHHHHHHhCC--CEEEcc
Confidence 999997621 2378889999887 466555
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.5e-07 Score=90.58 Aligned_cols=188 Identities=14% Similarity=0.124 Sum_probs=124.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC-------eEEEEeCCCCC--CCchHHHHHHhh-hcCCceEEEEeecCCHHHHHH
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSY--YDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTK 187 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~-------~V~~~~R~~~~--~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~ 187 (476)
.++|.|+|++|.||..++..|+..|. +++++|+.... ............ ....++.+.. .| .+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~---~~----~~ 74 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITD---DP----NV 74 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEec---Cc----HH
Confidence 36899999999999999999998874 79999985432 111111111110 0011233221 12 34
Q ss_pred hhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCcc---ccCCCCCCCCCCCCCC
Q 011841 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSS---VYGLNTQVPFSESHRT 263 (476)
Q Consensus 188 ~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~---vyg~~~~~~~~E~~~~ 263 (476)
.++++ |+||..||... ....+..+.++.|+.-...+.+..++.+. ...+|.+|.-. +|- ..+....
T Consensus 75 ~~~da--DivvitaG~~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~------~~k~sg~ 144 (322)
T cd01338 75 AFKDA--DWALLVGAKPR--GPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALI------AMKNAPD 144 (322)
T ss_pred HhCCC--CEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHH------HHHHcCC
Confidence 56667 99999999732 23356678899999999999999988874 54677776411 110 0011111
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCce
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTI 324 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~ 324 (476)
.++...||.+++..+++...+++.+|++...+|..+|||+.+. ..++.|......|+++
T Consensus 145 ~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~--s~vp~~S~~~v~g~pl 203 (322)
T cd01338 145 IPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP--TQYPDFTNATIGGKPA 203 (322)
T ss_pred CChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc--cEEEehhhcEECCEeH
Confidence 2556789999999999999999999999999999999999753 3444444444555554
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=82.80 Aligned_cols=94 Identities=19% Similarity=0.146 Sum_probs=73.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|||+||||. |+.|++.|.++|++|++.++..... ......+...+..+..|.+++.+++...++|+||
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~---------~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VI 70 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGK---------HLYPIHQALTVHTGALDPQELREFLKRHSIDILV 70 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcc---------ccccccCCceEEECCCCHHHHHHHHHhcCCCEEE
Confidence 68999999999 9999999999999999999855321 1112223344556777888899999998899999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~ 237 (476)
|.+...+ ...+.++.++|++.+++
T Consensus 71 DAtHPfA---------------~~is~~a~~a~~~~~ip 94 (256)
T TIGR00715 71 DATHPFA---------------AQITTNATAVCKELGIP 94 (256)
T ss_pred EcCCHHH---------------HHHHHHHHHHHHHhCCc
Confidence 9986522 23467899999999985
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.6e-06 Score=81.04 Aligned_cols=102 Identities=14% Similarity=0.042 Sum_probs=61.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC--HHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~~~~~ 193 (476)
....|++=-.+||+||++|+++|+++|++|++++|..... .....+++++.++-.+ .+.+.+.+++.
T Consensus 14 iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~----------~~~~~~v~~i~v~s~~~m~~~l~~~~~~~- 82 (229)
T PRK06732 14 IDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVK----------PEPHPNLSIIEIENVDDLLETLEPLVKDH- 82 (229)
T ss_pred cCCceeecCccchHHHHHHHHHHHhCCCEEEEEECccccc----------CCCCCCeEEEEEecHHHHHHHHHHHhcCC-
Confidence 3444433336789999999999999999999998743210 0012366776654332 23455566655
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHh
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS 233 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~ 233 (476)
|+|||+||...... ....-..++..+.++.+.+++
T Consensus 83 -DivIh~AAvsd~~~----~~~~~~~~~~~~~~v~~~~~~ 117 (229)
T PRK06732 83 -DVLIHSMAVSDYTP----VYMTDLEEVSASDNLNEFLTK 117 (229)
T ss_pred -CEEEeCCccCCcee----hhhhhhhhhhhhhhhhhhhcc
Confidence 99999999854211 111112234445566666654
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.22 E-value=9e-06 Score=83.72 Aligned_cols=93 Identities=28% Similarity=0.243 Sum_probs=67.4
Q ss_pred EEEECCCChhhHHHHHHHHHCC-C-eEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 121 VLVTGAAGFVGSHCSLALKKRG-D-GVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G-~-~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|+|.|| |++|+.+++.|++.+ + +|++.+|+.+ +..... ....++..+..|+.|.+++.++++++ |+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~-------~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~--dv 70 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPE-------KAERLAEKLLGDRVEAVQVDVNDPESLAELLRGC--DV 70 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHH-------HHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTS--SE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHH-------HHHHHHhhccccceeEEEEecCCHHHHHHHHhcC--CE
Confidence 789999 999999999999996 4 8999999432 211111 14569999999999999999999998 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~ 243 (476)
|||+++... ...++++|.+.|+ ++|-+
T Consensus 71 Vin~~gp~~------------------~~~v~~~~i~~g~--~yvD~ 97 (386)
T PF03435_consen 71 VINCAGPFF------------------GEPVARACIEAGV--HYVDT 97 (386)
T ss_dssp EEE-SSGGG------------------HHHHHHHHHHHT---EEEES
T ss_pred EEECCccch------------------hHHHHHHHHHhCC--Ceecc
Confidence 999998731 2367788888776 56653
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.6e-05 Score=78.01 Aligned_cols=162 Identities=16% Similarity=0.131 Sum_probs=103.3
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC-------eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH----------
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---------- 182 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~-------~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---------- 182 (476)
+|+|+||+|.||+.++..|+..|. +++++++... . ...+....|+.|.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~-~--------------~~~~g~~~Dl~d~~~~~~~~~~i 66 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPA-M--------------KALEGVVMELQDCAFPLLKGVVI 66 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCc-c--------------CccceeeeehhhhcccccCCcEE
Confidence 799999999999999999998652 5999988541 0 1233344455443
Q ss_pred -HHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCcc---ccCCCCCCCC
Q 011841 183 -PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS---VYGLNTQVPF 257 (476)
Q Consensus 183 -~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~---vyg~~~~~~~ 257 (476)
....+.++++ |+|||.||... ....+..+.+..|+.-.+.+....++.. ....+|.+|--. .|-.
T Consensus 67 ~~~~~~~~~~a--DiVVitAG~~~--~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~------ 136 (323)
T cd00704 67 TTDPEEAFKDV--DVAILVGAFPR--KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA------ 136 (323)
T ss_pred ecChHHHhCCC--CEEEEeCCCCC--CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH------
Confidence 2345677777 99999999843 3345677899999999999999998884 654666665311 0100
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
.+.....++....+.+.+..-++-..+++..+++..-+.-.+|+|..+.
T Consensus 137 ~k~sg~~p~~~vig~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 185 (323)
T cd00704 137 LKNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRVSDVKNVIIWGNHSN 185 (323)
T ss_pred HHHcCCCCHHHEEEeeHHHHHHHHHHHHHHhCcCHHHceeeeEEecccC
Confidence 0000000111222335555555555666667777666655668887544
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.7e-05 Score=73.56 Aligned_cols=82 Identities=18% Similarity=0.173 Sum_probs=61.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++++++|+||+|.+|+.+++.|++.|++|++++|+.+.. ...........+..+..+|..|.+++.++++++ |
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~----~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--d 99 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERA----QKAADSLRARFGEGVGAVETSDDAARAAAIKGA--D 99 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH----HHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcC--C
Confidence 4678999999999999999999999999999999853221 111111111225567778999999998999877 9
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+||++...
T Consensus 100 iVi~at~~ 107 (194)
T cd01078 100 VVFAAGAA 107 (194)
T ss_pred EEEECCCC
Confidence 99997654
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.9e-06 Score=81.38 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=69.0
Q ss_pred CEEEEECCCChhhHHHHHHHHH----CCCeEEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhhccC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKK----RGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~----~G~~V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
-.++|.||+||-|.+++++++. .|...-+..|+...+.+.+......... ...+ ++.+|.+|++++.+..+.+
T Consensus 6 yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~n~~Sl~emak~~ 84 (423)
T KOG2733|consen 6 YDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSV-ILIADSANEASLDEMAKQA 84 (423)
T ss_pred eeEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccce-EEEecCCCHHHHHHHHhhh
Confidence 3689999999999999999999 7899999999887777666665544322 2244 8999999999999999988
Q ss_pred CccEEEEccccC
Q 011841 193 PFTHVLHLAAQA 204 (476)
Q Consensus 193 ~~d~Vi~~Ag~~ 204 (476)
.+|+||+|+.
T Consensus 85 --~vivN~vGPy 94 (423)
T KOG2733|consen 85 --RVIVNCVGPY 94 (423)
T ss_pred --EEEEeccccc
Confidence 9999999983
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.4e-05 Score=75.49 Aligned_cols=172 Identities=19% Similarity=0.105 Sum_probs=100.3
Q ss_pred CEEEEECCCChhhHHHHHHHHH---CCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKK---RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~---~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+|+|+||+|.||++++..|.. .++++++++|.... .. ...+.........+.+ .+.+++.+.++++ |
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~--~g---~alDl~~~~~~~~i~~--~~~~d~~~~l~~~--D 71 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT--PG---VAVDLSHIPTAVKIKG--FSGEDPTPALEGA--D 71 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC--cc---eehhhhcCCCCceEEE--eCCCCHHHHcCCC--C
Confidence 6899999999999999998855 25688888885321 10 0011111111122333 2233445566766 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccc----cCCCCCCCCCCCCCCCCCCChHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSV----YGLNTQVPFSESHRTDQPASLYA 271 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~v----yg~~~~~~~~E~~~~~~p~~~Y~ 271 (476)
+||.++|.... ...+..+.+..|...+.++++.+++.+.. ++|.+.|--+ |-.... -...... ++....|
T Consensus 72 iVIitaG~~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~-~ivivvsNP~D~~t~~~~~~-~~~~sg~--p~~rvig 145 (312)
T PRK05086 72 VVLISAGVARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPK-ACIGIITNPVNTTVAIAAEV-LKKAGVY--DKNKLFG 145 (312)
T ss_pred EEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccCchHHHHHHHHHH-HHHhcCC--CHHHEEe
Confidence 99999998432 22456778999999999999999999886 6666665222 100000 0000000 1111122
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
..-+..-++...+++..+++..-+. ++|+|..+.
T Consensus 146 ~~~Lds~R~~~~ia~~l~~~~~~v~-~~v~GeHg~ 179 (312)
T PRK05086 146 VTTLDVIRSETFVAELKGKQPGEVE-VPVIGGHSG 179 (312)
T ss_pred eecHHHHHHHHHHHHHhCCChhheE-EEEEEecCC
Confidence 2223334445555666788777776 788887643
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.5e-05 Score=80.15 Aligned_cols=78 Identities=19% Similarity=0.140 Sum_probs=60.0
Q ss_pred CCCCCEEEEECC----------------CChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEee
Q 011841 115 RPNGMTVLVTGA----------------AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178 (476)
Q Consensus 115 ~~~~~~VLVtGa----------------tG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~D 178 (476)
...+++|||||| +|.+|.+++++|.++|++|+++++..+. . ...+ +..+|
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~-~-----------~~~~--~~~~d 250 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNL-P-----------TPAG--VKRID 250 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccc-c-----------CCCC--cEEEc
Confidence 357899999999 8999999999999999999999875421 0 0112 34679
Q ss_pred cCCHHHHHHhhccC--CccEEEEccccCCh
Q 011841 179 LNDAPLLTKLFDVV--PFTHVLHLAAQAGV 206 (476)
Q Consensus 179 l~d~~~l~~~~~~~--~~d~Vi~~Ag~~~~ 206 (476)
+++.+++.+.++.. ++|++||+||....
T Consensus 251 v~~~~~~~~~v~~~~~~~DilI~~Aav~d~ 280 (399)
T PRK05579 251 VESAQEMLDAVLAALPQADIFIMAAAVADY 280 (399)
T ss_pred cCCHHHHHHHHHHhcCCCCEEEEccccccc
Confidence 99988877766531 47999999998543
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00014 Score=63.78 Aligned_cols=115 Identities=18% Similarity=0.165 Sum_probs=76.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcC-CceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQK-HQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+|.|+|++|.+|++++..|...+ .+++++++..............-.... ....+.. .+. +.++++ |
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~----~~~~~a--D 71 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDY----EALKDA--D 71 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSG----GGGTTE--S
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---ccc----cccccc--c
Confidence 689999999999999999999986 589999985431111111111111111 1233333 222 245556 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
+||-.||... ....+..+.++.|..-.+.+.+...+.+....|+.+|
T Consensus 72 ivvitag~~~--~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 72 IVVITAGVPR--KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp EEEETTSTSS--STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred EEEEeccccc--cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 9999999742 2335577889999999999999999888665666655
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=73.62 Aligned_cols=162 Identities=15% Similarity=0.105 Sum_probs=102.9
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC-------eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---------
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP--------- 183 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~-------~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~--------- 183 (476)
+|+|+||+|.||..++..|...|. +++++|+.... ...+.+..|+.|..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~---------------~~a~g~~~Dl~d~~~~~~~~~~~ 65 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAM---------------KVLEGVVMELMDCAFPLLDGVVP 65 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcc---------------cccceeEeehhcccchhcCceec
Confidence 589999999999999999998553 58999874331 01333455555544
Q ss_pred --HHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCcc---ccCCCCCCCC
Q 011841 184 --LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS---VYGLNTQVPF 257 (476)
Q Consensus 184 --~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~---vyg~~~~~~~ 257 (476)
...+.++++ |+||+.||.... ...+..+.+..|+.-.+.+.+...+.. ....+|.+|.-. .|-..
T Consensus 66 ~~~~~~~~~~a--DiVVitAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~~----- 136 (324)
T TIGR01758 66 THDPAVAFTDV--DVAILVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVLS----- 136 (324)
T ss_pred cCChHHHhCCC--CEEEEcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHHH-----
Confidence 334567777 999999998432 234567889999999999999998884 554667666411 11000
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
+.....++.-.=..+.+..-++-..+++..+++..-++-.+|+|..+.
T Consensus 137 -~~sg~~~~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 184 (324)
T TIGR01758 137 -NYAPSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSS 184 (324)
T ss_pred -HHcCCCCcceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCCC
Confidence 000000111111223444445555566677888888877788897554
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.9e-05 Score=74.43 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=60.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.++++|+|+|| |++|++++..|++.|++ |++++|+.+..++ .+........ ..++.+...|+.|.+++.+.++..
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~-a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~- 200 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYER-AEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASS- 200 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHH-HHHHHHHHhhcCCCceeEEechhhhhHHHhhhccC-
Confidence 46789999998 89999999999999986 9999996521111 1111111111 234566778998888888888776
Q ss_pred ccEEEEcccc
Q 011841 194 FTHVLHLAAQ 203 (476)
Q Consensus 194 ~d~Vi~~Ag~ 203 (476)
|+|||+...
T Consensus 201 -DilINaTp~ 209 (289)
T PRK12548 201 -DILVNATLV 209 (289)
T ss_pred -CEEEEeCCC
Confidence 999998754
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00072 Score=67.54 Aligned_cols=118 Identities=16% Similarity=0.102 Sum_probs=80.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
..+++|.|+|+ |.||..++-.|+..|. ++++++++.+..................+.+.. .+ ++ .++++
T Consensus 4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~---~~---~~-~~~~a- 74 (315)
T PRK00066 4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA---GD---YS-DCKDA- 74 (315)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe---CC---HH-HhCCC-
Confidence 35679999998 9999999999999986 899999865543222222111111112343432 22 22 35677
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||..||... ....+..+.+..|..-.+.+++.+++.+....++.+|-
T Consensus 75 -divIitag~~~--k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 75 -DLVVITAGAPQ--KPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred -CEEEEecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 99999999732 22345678899999999999999998887657776664
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0007 Score=64.27 Aligned_cols=75 Identities=25% Similarity=0.404 Sum_probs=59.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~V 197 (476)
|+++|.|+ |-+|+.+++.|.++||+|++++++.+ ..............+.+|-+|++.++++ ++.+ |++
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~-------~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~a--D~v 70 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEE-------RVEEFLADELDTHVVIGDATDEDVLEEAGIDDA--DAV 70 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHH-------HHHHHhhhhcceEEEEecCCCHHHHHhcCCCcC--CEE
Confidence 68899997 99999999999999999999998432 1122122235889999999999999987 6666 999
Q ss_pred EEcccc
Q 011841 198 LHLAAQ 203 (476)
Q Consensus 198 i~~Ag~ 203 (476)
|-..+.
T Consensus 71 va~t~~ 76 (225)
T COG0569 71 VAATGN 76 (225)
T ss_pred EEeeCC
Confidence 987764
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00031 Score=70.04 Aligned_cols=171 Identities=13% Similarity=0.089 Sum_probs=97.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCC--CCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFN--SYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~--~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
|+|.|+|++|.+|..++..|+..|+ +|++++|.. +................ +... ....++ +.+ .++++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~-~~~~-~i~~~~--d~~-~l~~a-- 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAA-GIDA-EIKISS--DLS-DVAGS-- 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhcc-CCCc-EEEECC--CHH-HhCCC--
Confidence 6899999999999999999999986 499999943 22211111111111111 1111 111111 123 36777
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc---ccCCCCCCCCCCCCCCCCCCChHH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS---VYGLNTQVPFSESHRTDQPASLYA 271 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~---vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (476)
|+||-++|.... ...+..+.++.|+.-...+++...+.+....||.+++-. .|-...... .++....|
T Consensus 74 DiViitag~p~~--~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~~g-------~~~~~viG 144 (309)
T cd05294 74 DIVIITAGVPRK--EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESG-------FDKNRVFG 144 (309)
T ss_pred CEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcC-------CCHHHEee
Confidence 999999997321 223446788889999999999888877665777777632 110000000 01222222
Q ss_pred H-HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 272 A-TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 272 ~-sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
. +-+...++...+++..+++..-+. +.|+|..+.
T Consensus 145 ~gt~LDs~R~~~~la~~l~v~~~~v~-~~viGeHg~ 179 (309)
T cd05294 145 LGTHLDSLRFKVAIAKHFNVHISEVH-TRIIGEHGD 179 (309)
T ss_pred ccchHHHHHHHHHHHHHHCcChHHeE-EEEEecCCC
Confidence 2 223344444455556677666665 666786543
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00071 Score=68.20 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=73.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC---------Cc-------hHH----HHHHhhhcCCceEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY---------DP-------SLK----RARQKLLQKHQVFI 174 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~---------~~-------~~~----~~~~~~~~~~~v~~ 174 (476)
.++++|+|.|+ |.+|.++++.|+..|. +++++|++.-.. .+ .+. +...+....-.++.
T Consensus 22 L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~ 100 (338)
T PRK12475 22 IREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP 100 (338)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence 46679999997 8899999999999997 788888764110 00 011 11111122335666
Q ss_pred EEeecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 175 ~~~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
+..|++ .+.++++++++ |+||.+... ...-..+-++|.+.+++ +|+.+..+.+|
T Consensus 101 ~~~~~~-~~~~~~~~~~~--DlVid~~D~-----------------~~~r~~in~~~~~~~ip--~i~~~~~g~~G 154 (338)
T PRK12475 101 VVTDVT-VEELEELVKEV--DLIIDATDN-----------------FDTRLLINDLSQKYNIP--WIYGGCVGSYG 154 (338)
T ss_pred EeccCC-HHHHHHHhcCC--CEEEEcCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEecccEE
Confidence 666775 45677888876 999998732 22223456788888875 88887766665
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00078 Score=67.92 Aligned_cols=113 Identities=19% Similarity=0.206 Sum_probs=74.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC---------Cc-------hHHHHH----HhhhcCCceEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY---------DP-------SLKRAR----QKLLQKHQVFI 174 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~---------~~-------~~~~~~----~~~~~~~~v~~ 174 (476)
....+|+|.|+ |.||.++++.|+..|. +|+++|.+.-.. .+ .+.... .+....-.++.
T Consensus 22 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 22 LREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 45678999998 9999999999999998 888888753110 00 011111 11112224566
Q ss_pred EEeecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC
Q 011841 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (476)
Q Consensus 175 ~~~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~ 251 (476)
+..+++ .+.+.++++++ |+||.+.. |...-..+.++|.+.+++ +|+.+..+.||.
T Consensus 101 ~~~~~~-~~~~~~~~~~~--DlVid~~D-----------------n~~~r~~ln~~~~~~~iP--~i~~~~~g~~G~ 155 (339)
T PRK07688 101 IVQDVT-AEELEELVTGV--DLIIDATD-----------------NFETRFIVNDAAQKYGIP--WIYGACVGSYGL 155 (339)
T ss_pred EeccCC-HHHHHHHHcCC--CEEEEcCC-----------------CHHHHHHHHHHHHHhCCC--EEEEeeeeeeeE
Confidence 666765 45677788876 99999863 222233567889988874 888887776653
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00011 Score=71.55 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=58.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
....++|-|||||.|..++++|+.+|.+-.+..|+..+. ....+. -+.++...++-+++.+++..++. ++
T Consensus 5 ~e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl----~~l~~~----LG~~~~~~p~~~p~~~~~~~~~~--~V 74 (382)
T COG3268 5 REYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKL----DALRAS----LGPEAAVFPLGVPAALEAMASRT--QV 74 (382)
T ss_pred cceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHH----HHHHHh----cCccccccCCCCHHHHHHHHhcc--eE
Confidence 345789999999999999999999999988888854322 222222 13344444555688999999988 99
Q ss_pred EEEccccC
Q 011841 197 VLHLAAQA 204 (476)
Q Consensus 197 Vi~~Ag~~ 204 (476)
|+||+|+.
T Consensus 75 VlncvGPy 82 (382)
T COG3268 75 VLNCVGPY 82 (382)
T ss_pred EEeccccc
Confidence 99999983
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=73.55 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=71.6
Q ss_pred CCCCEEEEECC----------------CChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeec
Q 011841 116 PNGMTVLVTGA----------------AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179 (476)
Q Consensus 116 ~~~~~VLVtGa----------------tG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl 179 (476)
..+++|||||| +|.+|..++++|..+|++|+++.+..... ...++ ...|+
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~------------~~~~~--~~~~v 248 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL------------TPPGV--KSIKV 248 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC------------CCCCc--EEEEe
Confidence 67899999998 36799999999999999999988644211 11122 55789
Q ss_pred CCHHHH-HHhhccC--CccEEEEccccCChhhhh---cCh---HHHHHHHHHHHHHHHHHHHhcC
Q 011841 180 NDAPLL-TKLFDVV--PFTHVLHLAAQAGVRYAM---QNP---QSYVASNIAGFVNLLEVCKSVN 235 (476)
Q Consensus 180 ~d~~~l-~~~~~~~--~~d~Vi~~Ag~~~~~~~~---~~~---~~~~~~nv~gt~~ll~~a~~~~ 235 (476)
.+.+++ +++++.. ++|++|++||........ ... ...+..|+..+..++...++..
T Consensus 249 ~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 249 STAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred ccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 888877 5555322 469999999986542211 101 1123456667778887776544
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00028 Score=67.05 Aligned_cols=75 Identities=9% Similarity=0.116 Sum_probs=51.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
...-|++=-.++|+||.+++++|+++|++|+++++... . . ... ...+|+.+.+++.++++.+
T Consensus 13 iD~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~--------l-~---~~~---~~~~Dv~d~~s~~~l~~~v~~~ 77 (227)
T TIGR02114 13 IDSVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA--------L-K---PEP---HPNLSIREIETTKDLLITLKEL 77 (227)
T ss_pred CCCceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh--------c-c---ccc---CCcceeecHHHHHHHHHHHHHH
Confidence 34444444456899999999999999999999876211 0 0 000 1347888888777665432
Q ss_pred --CccEEEEccccCC
Q 011841 193 --PFTHVLHLAAQAG 205 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~ 205 (476)
++|++|||||...
T Consensus 78 ~g~iDiLVnnAgv~d 92 (227)
T TIGR02114 78 VQEHDILIHSMAVSD 92 (227)
T ss_pred cCCCCEEEECCEecc
Confidence 5799999999744
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0023 Score=63.67 Aligned_cols=168 Identities=15% Similarity=0.117 Sum_probs=101.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
++|.|.|+ |.+|+.++..|+..| ++|++++|+.+............... ...+.+.. .+.+ .++++ |
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~----~l~~a--D 70 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYS----DCKDA--D 70 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHH----HhCCC--C
Confidence 47899996 999999999999999 68999999765433222222111111 12233332 2322 24556 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc---ccCCCCCCCCCCCCCCCCCCChHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS---VYGLNTQVPFSESHRTDQPASLYAA 272 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~---vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (476)
+||+++|... ....+..+.++.|..-.+.+.+.+++.+....++.+|.-. .|-.. .. ...++....|.
T Consensus 71 IVIitag~~~--~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~~-----~~--~g~p~~~v~g~ 141 (306)
T cd05291 71 IVVITAGAPQ--KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQ-----KL--SGLPKNRVIGT 141 (306)
T ss_pred EEEEccCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHH-----HH--hCcCHHHEeec
Confidence 9999999732 2334667889999999999999999888775677776411 00000 00 00011111222
Q ss_pred -HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 273 -TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 273 -sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
+-+..-++...+++..+++..-++- +|+|..+.
T Consensus 142 gt~LDs~R~~~~la~~l~v~~~~v~~-~V~G~Hg~ 175 (306)
T cd05291 142 GTSLDTARLRRALAEKLNVDPRSVHA-YVLGEHGD 175 (306)
T ss_pred cchHHHHHHHHHHHHHHCCCcccceE-EEEecCCC
Confidence 2233444455556667888877875 78997543
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00033 Score=70.15 Aligned_cols=72 Identities=22% Similarity=0.256 Sum_probs=50.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC-C-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR-G-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~-G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
..+++|+||||+|+||+.+++.|+++ | .+|+++.|.... ......+ +..+|+. .+.+++.++
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r----l~~La~e--------l~~~~i~---~l~~~l~~a- 216 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER----LQELQAE--------LGGGKIL---SLEEALPEA- 216 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH----HHHHHHH--------hccccHH---hHHHHHccC-
Confidence 57799999999999999999999865 5 589999884321 1111111 1123433 366777776
Q ss_pred ccEEEEccccC
Q 011841 194 FTHVLHLAAQA 204 (476)
Q Consensus 194 ~d~Vi~~Ag~~ 204 (476)
|+|||+++..
T Consensus 217 -DiVv~~ts~~ 226 (340)
T PRK14982 217 -DIVVWVASMP 226 (340)
T ss_pred -CEEEECCcCC
Confidence 9999999873
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0013 Score=65.37 Aligned_cols=167 Identities=18% Similarity=0.112 Sum_probs=104.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|+|.|+|++|.+|..++-.|+.+| .++++++++ . ... ......+.. ....+.... ..+++.+.++++ |+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~-a~g-~alDL~~~~--~~~~i~~~~--~~~~~y~~~~da--Di 71 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-N-TPG-VAADLSHIN--TPAKVTGYL--GPEELKKALKGA--DV 71 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-c-cce-eehHhHhCC--CcceEEEec--CCCchHHhcCCC--CE
Confidence 689999999999999999999888 589999985 1 111 111111111 112222110 112245667777 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc-------ccCCCCCCCCCCCCCCCCCCCh
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS-------VYGLNTQVPFSESHRTDQPASL 269 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~-------vyg~~~~~~~~E~~~~~~p~~~ 269 (476)
||-.||.. +....+..+.++.|..-...+++..++.+....+|.+|--. .|-.... . ..++...
T Consensus 72 vvitaG~~--~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~------s-~~p~~rv 142 (310)
T cd01337 72 VVIPAGVP--RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKA------G-VYDPKRL 142 (310)
T ss_pred EEEeCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHh------c-CCCHHHE
Confidence 99999973 22335677899999999999999999888776777777532 1110000 0 0011112
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCC
Q 011841 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPW 304 (476)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~ 304 (476)
.|..-+..-++...+++..|++..-++ ++|+|..
T Consensus 143 iG~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 143 FGVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred EeeechHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 222334555566666777788777777 8889976
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0022 Score=64.18 Aligned_cols=173 Identities=14% Similarity=0.080 Sum_probs=105.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-------eEEEEeCCCCC-CCchHHHHHHhhh--cCCceEEEEeecCCHHHHH
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSY-YDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLT 186 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-------~V~~~~R~~~~-~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~ 186 (476)
+..+|.|+||+|.||..++..|+..|. +++++|+.... ..........+.. ...++.+.. ...
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~-------~~~ 74 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATT-------DPE 74 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEec-------ChH
Confidence 346899999999999999999998873 79999885421 1111111111111 111222221 123
Q ss_pred HhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCcc---ccCCCCCCCCCCCCC
Q 011841 187 KLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSS---VYGLNTQVPFSESHR 262 (476)
Q Consensus 187 ~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~---vyg~~~~~~~~E~~~ 262 (476)
+.++++ |+||..||.. +....+..+.+..|..-.+.+.+.+++.+. ...++.+|--. +|-. .+..+
T Consensus 75 ~~~~da--DvVVitAG~~--~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~------~k~s~ 144 (323)
T TIGR01759 75 EAFKDV--DAALLVGAFP--RKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA------SKNAP 144 (323)
T ss_pred HHhCCC--CEEEEeCCCC--CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH------HHHcC
Confidence 456666 9999999973 223456778999999999999999998876 54666666311 1100 00000
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
..++....|.+.+..-++-..+++..+++..-++-..|+|..+.
T Consensus 145 g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 188 (323)
T TIGR01759 145 DIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN 188 (323)
T ss_pred CCCHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC
Confidence 11222223335555555556666777888888877788897554
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0066 Score=63.79 Aligned_cols=171 Identities=15% Similarity=0.150 Sum_probs=107.9
Q ss_pred CCCCEEEEECCC-ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-----CCceEEEEeecCCHHHHHHhh
Q 011841 116 PNGMTVLVTGAA-GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-----KHQVFIVEGDLNDAPLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVtGat-G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-----~~~v~~~~~Dl~d~~~l~~~~ 189 (476)
-..+.+|||||+ |.||-.+++.|++.|..|++..-+- ++......+.++. ..-+.++..++....+++.++
T Consensus 394 y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~---s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlI 470 (866)
T COG4982 394 YGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRL---SEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALI 470 (866)
T ss_pred cccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccc---cHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHH
Confidence 456799999986 8899999999999999999987422 2222332332222 235778888888777777766
Q ss_pred ccC-------------------CccEEEEccccCCh-hhhhcChHHHHH--HHHHHHHHHHHHHHhcCC----CC--eEE
Q 011841 190 DVV-------------------PFTHVLHLAAQAGV-RYAMQNPQSYVA--SNIAGFVNLLEVCKSVNP----QP--SIV 241 (476)
Q Consensus 190 ~~~-------------------~~d~Vi~~Ag~~~~-~~~~~~~~~~~~--~nv~gt~~ll~~a~~~~~----~~--~~V 241 (476)
+-+ .+|.+|-+|++.-. .....++...++ +-+.....++-..++.+. .. |+|
T Consensus 471 ewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVV 550 (866)
T COG4982 471 EWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVV 550 (866)
T ss_pred HHhccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEE
Confidence 411 47888888887321 223334444333 333334445544444332 21 466
Q ss_pred EecCcc--ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEeeCcccCCC
Q 011841 242 WASSSS--VYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPW 304 (476)
Q Consensus 242 ~~SS~~--vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G~~ 304 (476)
.-.|-. .| -....|+.+|.+.|.++..+..+. .+.++.-++|++-|.+
T Consensus 551 LPgSPNrG~F---------------GgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTG 604 (866)
T COG4982 551 LPGSPNRGMF---------------GGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTG 604 (866)
T ss_pred ecCCCCCCcc---------------CCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeecccc
Confidence 555422 22 334679999999999999887665 2566666777777664
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0034 Score=62.87 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=103.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-------eEEEEeCCCCC--CCchHHHHHHhh-hcCCceEEEEeecCCHHHH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSY--YDPSLKRARQKL-LQKHQVFIVEGDLNDAPLL 185 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-------~V~~~~R~~~~--~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l 185 (476)
.+.++|.|+|++|.+|..++-.|...|. +++++|+.... .....-...... ....++.+..+ .
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~-------~ 74 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDD-------P 74 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecC-------h
Confidence 3567999999999999999999988763 79999885431 111111111110 11113332211 2
Q ss_pred HHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCcc---ccCCCCCCCCCCCC
Q 011841 186 TKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS---VYGLNTQVPFSESH 261 (476)
Q Consensus 186 ~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~---vyg~~~~~~~~E~~ 261 (476)
.+.++++ |+||-.||... ....+..+.++.|..-.+.+.+...+.. ....+|.+|.-. .|-. .+..
T Consensus 75 y~~~~da--DiVVitaG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~------~k~s 144 (326)
T PRK05442 75 NVAFKDA--DVALLVGARPR--GPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA------MKNA 144 (326)
T ss_pred HHHhCCC--CEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH------HHHc
Confidence 3456666 99999999732 2345677889999999999999988844 444677777411 1100 0000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
+..++....|.+-+..-++-..+++..+++...++--.|+|..+.
T Consensus 145 ~g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~ 189 (326)
T PRK05442 145 PDLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA 189 (326)
T ss_pred CCCCHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC
Confidence 011122233334455555555666777888777776667887554
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0022 Score=67.46 Aligned_cols=76 Identities=26% Similarity=0.275 Sum_probs=54.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++|+|+|+|+++ +|..+++.|+++|++|++.++.... ........ +...++.++.+|..| ....+ +|
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~---~~~~~~~~-l~~~~~~~~~~~~~~-----~~~~~--~d 70 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEED---QLKEALEE-LGELGIELVLGEYPE-----EFLEG--VD 70 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchH---HHHHHHHH-HHhcCCEEEeCCcch-----hHhhc--CC
Confidence 3578999999866 9999999999999999999985421 11111112 233367888888776 22333 49
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+||+++|.
T Consensus 71 ~vv~~~g~ 78 (450)
T PRK14106 71 LVVVSPGV 78 (450)
T ss_pred EEEECCCC
Confidence 99999986
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.068 Score=47.19 Aligned_cols=191 Identities=15% Similarity=0.102 Sum_probs=108.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC--C-----HHHHHHhhcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN--D-----APLLTKLFDV 191 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d-----~~~l~~~~~~ 191 (476)
.+|+|-||-|-+|+.+++.+.+++|-|.-++..+++... --.++.+|-+ + .+++.+.+.+
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~Ad-------------~sI~V~~~~swtEQe~~v~~~vg~sL~g 70 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQAD-------------SSILVDGNKSWTEQEQSVLEQVGSSLQG 70 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccccc-------------ceEEecCCcchhHHHHHHHHHHHHhhcc
Confidence 589999999999999999999999988888764331100 1122333321 1 1235566777
Q ss_pred CCccEEEEccccCChh-h----hhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCc-cccCCCCCCCCCCCCCCCC
Q 011841 192 VPFTHVLHLAAQAGVR-Y----AMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS-SVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~-~----~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~-~vyg~~~~~~~~E~~~~~~ 265 (476)
.++|.|+..||..... . -.++.+.+++..+-...--...+-++-...-++.+..+ +..+++ +
T Consensus 71 ekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~gT------------P 138 (236)
T KOG4022|consen 71 EKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGGT------------P 138 (236)
T ss_pred cccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCCC------------C
Confidence 7899999999863221 1 11222233332222111111222222221234444432 233322 4
Q ss_pred CCChHHHHHHHHHHHHHHHHHH-hCC----cEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 266 PASLYAATKKAGEEIAHTYNHI-YGL----ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~-~gi----~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
..-.|+..|.+..++++.+..+ .|+ -...|-|-.+-.|..+..+. ..-..+|+
T Consensus 139 gMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKwMP----------------------~ADfssWT 196 (236)
T KOG4022|consen 139 GMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKWMP----------------------NADFSSWT 196 (236)
T ss_pred cccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccccccCC----------------------CCcccCcc
Confidence 5678999999999999998754 344 34445555555564443211 11124578
Q ss_pred eHHHHHHHHHHHHhhc
Q 011841 341 YIDDVVKGCVGALDTA 356 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~ 356 (476)
....+++-+++-....
T Consensus 197 PL~fi~e~flkWtt~~ 212 (236)
T KOG4022|consen 197 PLSFISEHFLKWTTET 212 (236)
T ss_pred cHHHHHHHHHHHhccC
Confidence 8888888777766443
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0048 Score=57.57 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=70.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCC--------------chHHHHHHhhhc--CC--ceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYD--------------PSLKRARQKLLQ--KH--QVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~--------------~~~~~~~~~~~~--~~--~v~~~~ 176 (476)
....+|+|.|+ |.+|.++++.|...|. +++++|.+.-... ..+.....+.+. .+ .++.+.
T Consensus 19 l~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 19 LLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred hcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 46678999995 9999999999999996 7888887631110 111111111111 22 344444
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
.++. .+.+.++++++ |+||.+... ...-..+.+.|++.+.+ +|+.+..+.+|
T Consensus 98 ~~i~-~~~~~~~~~~~--D~Vi~~~d~-----------------~~~r~~l~~~~~~~~ip--~i~~~~~g~~G 149 (202)
T TIGR02356 98 ERVT-AENLELLINNV--DLVLDCTDN-----------------FATRYLINDACVALGTP--LISAAVVGFGG 149 (202)
T ss_pred hcCC-HHHHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEeccCeE
Confidence 4443 45677788776 999998642 22233566788888864 88877655554
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.002 Score=65.96 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=63.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHH-hhccCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTK-LFDVVPF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~-~~~~~~~ 194 (476)
+.|+|.|.||||++|..|++.|+++ +++|+.+.+..+.... .. . .......+|+.+.+.++. .++++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~-i~---~-----~~~~l~~~~~~~~~~~~~~~~~~~-- 105 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQS-FG---S-----VFPHLITQDLPNLVAVKDADFSDV-- 105 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCC-ch---h-----hCccccCccccceecCCHHHhcCC--
Confidence 5579999999999999999999998 6799999874322111 00 0 011122234332222222 24555
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~ 251 (476)
|+|+-+.+. .....++..+ +.+ .++|-.|+..-+..
T Consensus 106 DvVf~Alp~------------------~~s~~i~~~~-~~g--~~VIDlSs~fRl~~ 141 (381)
T PLN02968 106 DAVFCCLPH------------------GTTQEIIKAL-PKD--LKIVDLSADFRLRD 141 (381)
T ss_pred CEEEEcCCH------------------HHHHHHHHHH-hCC--CEEEEcCchhccCC
Confidence 999997754 1344566655 345 38999999775543
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0035 Score=54.49 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=51.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
.++++|+|.|+ |..|+.++..|.+.|.+ |+++.|..+ ..+..........+.++. +. ++.+.+..+
T Consensus 10 l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~-----ra~~l~~~~~~~~~~~~~--~~---~~~~~~~~~-- 76 (135)
T PF01488_consen 10 LKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPE-----RAEALAEEFGGVNIEAIP--LE---DLEEALQEA-- 76 (135)
T ss_dssp GTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHH-----HHHHHHHHHTGCSEEEEE--GG---GHCHHHHTE--
T ss_pred cCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHH-----HHHHHHHHcCccccceee--HH---HHHHHHhhC--
Confidence 57889999997 99999999999999986 999999432 111222222222444443 33 344566655
Q ss_pred cEEEEccccC
Q 011841 195 THVLHLAAQA 204 (476)
Q Consensus 195 d~Vi~~Ag~~ 204 (476)
|+||++.+..
T Consensus 77 DivI~aT~~~ 86 (135)
T PF01488_consen 77 DIVINATPSG 86 (135)
T ss_dssp SEEEE-SSTT
T ss_pred CeEEEecCCC
Confidence 9999998763
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0014 Score=60.19 Aligned_cols=68 Identities=15% Similarity=0.165 Sum_probs=40.5
Q ss_pred CCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC--HHHHHHhhccCCccEEEEccc
Q 011841 125 GAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVVPFTHVLHLAA 202 (476)
Q Consensus 125 GatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~~~~~~d~Vi~~Ag 202 (476)
-.||-.|.+|++++..+|++|+.+...... ....++.++...-.+ .+.+.+.+... |++|++|+
T Consensus 26 ~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~------------~~p~~~~~i~v~sa~em~~~~~~~~~~~--Di~I~aAA 91 (185)
T PF04127_consen 26 RSSGKMGAALAEEAARRGAEVTLIHGPSSL------------PPPPGVKVIRVESAEEMLEAVKELLPSA--DIIIMAAA 91 (185)
T ss_dssp S--SHHHHHHHHHHHHTT-EEEEEE-TTS----------------TTEEEEE-SSHHHHHHHHHHHGGGG--SEEEE-SB
T ss_pred CCcCHHHHHHHHHHHHCCCEEEEEecCccc------------cccccceEEEecchhhhhhhhccccCcc--eeEEEecc
Confidence 356999999999999999999999874320 012367666643221 12344555556 99999999
Q ss_pred cCCh
Q 011841 203 QAGV 206 (476)
Q Consensus 203 ~~~~ 206 (476)
..+.
T Consensus 92 VsDf 95 (185)
T PF04127_consen 92 VSDF 95 (185)
T ss_dssp --SE
T ss_pred hhhe
Confidence 9664
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0044 Score=65.08 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=57.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~V 197 (476)
|+|+|+|+ |.+|+++++.|.++|++|++++++.+ . .....+..++.++.+|.++.+.+.++ ++.+ |.|
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~-------~-~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a--~~v 69 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEE-------R-LRRLQDRLDVRTVVGNGSSPDVLREAGAEDA--DLL 69 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHH-------H-HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcC--CEE
Confidence 68999997 99999999999999999999998332 1 11111224789999999999988887 6666 988
Q ss_pred EEccc
Q 011841 198 LHLAA 202 (476)
Q Consensus 198 i~~Ag 202 (476)
|-+..
T Consensus 70 i~~~~ 74 (453)
T PRK09496 70 IAVTD 74 (453)
T ss_pred EEecC
Confidence 87764
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0062 Score=63.20 Aligned_cols=172 Identities=14% Similarity=0.104 Sum_probs=106.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHC-------CC--eEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHH
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKR-------GD--GVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTK 187 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~-------G~--~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~ 187 (476)
.-+|.|+|++|.||.+++-.|+.. |. ++++++++.+......-...... .....+.+... | .+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~---~----ye 172 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGID---P----YE 172 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecC---C----HH
Confidence 459999999999999999999988 54 78888886665433222222111 11113322222 2 23
Q ss_pred hhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHh-cCCCCeEEEecCcc---ccCCCCCCCCCCCCCC
Q 011841 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS-VNPQPSIVWASSSS---VYGLNTQVPFSESHRT 263 (476)
Q Consensus 188 ~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~-~~~~~~~V~~SS~~---vyg~~~~~~~~E~~~~ 263 (476)
.++++ |+||-.||.. +....+..+.++.|+.-.+.+.....+ ++....||.+|.-. .|-. .+....
T Consensus 173 ~~kda--DiVVitAG~p--rkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~------~k~sg~ 242 (444)
T PLN00112 173 VFQDA--EWALLIGAKP--RGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC------LKNAPN 242 (444)
T ss_pred HhCcC--CEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH------HHHcCC
Confidence 46667 9999999983 223356778999999999999999988 57665677776421 0000 000000
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
.+....=..+.+..-++-..+++..+++...|.-.+|+|..+.
T Consensus 243 ~~~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd 285 (444)
T PLN00112 243 IPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST 285 (444)
T ss_pred CCcceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC
Confidence 0111111233455555556666777888888877888997554
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.01 Score=58.62 Aligned_cols=167 Identities=17% Similarity=0.132 Sum_probs=97.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
++|.|+|+ |+||+.++-.|+.++ .+++++++..+............... ...+++ .+| .| .+.+++. |
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i-~~~-~~----y~~~~~a--D 71 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKI-TGD-GD----YEDLKGA--D 71 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEE-ecC-CC----hhhhcCC--C
Confidence 58999999 999999999998875 48999998743332211111111111 112222 222 12 2346666 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCc---cccCCCCCCCCCCCCCCCCCCChHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS---SVYGLNTQVPFSESHRTDQPASLYAA 272 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~---~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (476)
+|+-.||. ++-.-....+.++.|..-...+.....+.+....|+.+|-- -+|-.....++ + ...-.-+.
T Consensus 72 iVvitAG~--prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~~k~sg~-----p-~~rvig~g 143 (313)
T COG0039 72 IVVITAGV--PRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIAMKFSGF-----P-KNRVIGSG 143 (313)
T ss_pred EEEEeCCC--CCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHHHHhcCC-----C-ccceeccc
Confidence 99999987 33333466788999999999999998888876456665541 11110000011 0 11112233
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeeCcccCC
Q 011841 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGP 303 (476)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~ 303 (476)
+.+..-++-..+++..+++..-++ ++|.|.
T Consensus 144 t~LDsaR~~~~lae~~~v~~~~V~-~~ViGe 173 (313)
T COG0039 144 TVLDSARFRTFLAEKLGVSPKDVH-AYVIGE 173 (313)
T ss_pred chHHHHHHHHHHHHHhCCChhHce-eeEecc
Confidence 455555555666666777666665 445563
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0094 Score=49.96 Aligned_cols=95 Identities=22% Similarity=0.258 Sum_probs=63.1
Q ss_pred EEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEEEc
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHL 200 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~ 200 (476)
|+|.|. |-+|..+++.|.+.+.+|++++++.+ ..+.....++.++.+|.+|++.++++--. +.+.||-+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~---------~~~~~~~~~~~~i~gd~~~~~~l~~a~i~-~a~~vv~~ 69 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPE---------RVEELREEGVEVIYGDATDPEVLERAGIE-KADAVVIL 69 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHH---------HHHHHHHTTSEEEES-TTSHHHHHHTTGG-CESEEEEE
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcH---------HHHHHHhcccccccccchhhhHHhhcCcc-ccCEEEEc
Confidence 678886 89999999999997779999998321 22222334689999999999998875322 34888876
Q ss_pred cccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 011841 201 AAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243 (476)
Q Consensus 201 Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~ 243 (476)
... -.....++..+++.+...+++..
T Consensus 70 ~~~-----------------d~~n~~~~~~~r~~~~~~~ii~~ 95 (116)
T PF02254_consen 70 TDD-----------------DEENLLIALLARELNPDIRIIAR 95 (116)
T ss_dssp SSS-----------------HHHHHHHHHHHHHHTTTSEEEEE
T ss_pred cCC-----------------HHHHHHHHHHHHHHCCCCeEEEE
Confidence 642 11223455666765544466633
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.005 Score=70.11 Aligned_cols=77 Identities=22% Similarity=0.189 Sum_probs=57.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCC-Ce-------------EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRG-DG-------------VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA 182 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G-~~-------------V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~ 182 (476)
.+++|+|.|+ |+||+.+++.|.+.+ ++ |++.++..+ ....-....+++..+..|+.|.
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~-------~a~~la~~~~~~~~v~lDv~D~ 639 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLK-------DAKETVEGIENAEAVQLDVSDS 639 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHH-------HHHHHHHhcCCCceEEeecCCH
Confidence 4679999997 999999999998763 33 777776321 1111111123678899999999
Q ss_pred HHHHHhhccCCccEEEEcccc
Q 011841 183 PLLTKLFDVVPFTHVLHLAAQ 203 (476)
Q Consensus 183 ~~l~~~~~~~~~d~Vi~~Ag~ 203 (476)
+++.++++++ |+||++...
T Consensus 640 e~L~~~v~~~--DaVIsalP~ 658 (1042)
T PLN02819 640 ESLLKYVSQV--DVVISLLPA 658 (1042)
T ss_pred HHHHHhhcCC--CEEEECCCc
Confidence 9999998876 999999864
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0075 Score=51.30 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=54.5
Q ss_pred EEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
||.|+||||++|..+++.|++.- .++..+.......................+.+. | .+.+.+ .++ |+||
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~-~~~~~~----~~~--Dvvf 71 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVE--D-ADPEEL----SDV--DVVF 71 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEE--E-TSGHHH----TTE--SEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEe--e-cchhHh----hcC--CEEE
Confidence 68999999999999999999963 455554443331112222111111111122222 2 333333 444 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
.+.+. .....+...+.+.|. ++|=.|+..
T Consensus 72 ~a~~~------------------~~~~~~~~~~~~~g~--~ViD~s~~~ 100 (121)
T PF01118_consen 72 LALPH------------------GASKELAPKLLKAGI--KVIDLSGDF 100 (121)
T ss_dssp E-SCH------------------HHHHHHHHHHHHTTS--EEEESSSTT
T ss_pred ecCch------------------hHHHHHHHHHhhCCc--EEEeCCHHH
Confidence 99753 113456666677776 566666543
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.011 Score=59.09 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=98.3
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccCCc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
.++|.|+|+ |.||..++-.|+..| .++++++++.+....... ....... .....+... .|. + .++++
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~-Dl~~~~~~~~~~~v~~~--~dy---~-~~~~a-- 72 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAM-DLQHGSAFLKNPKIEAD--KDY---S-VTANS-- 72 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHH-HHHHhhccCCCCEEEEC--CCH---H-HhCCC--
Confidence 368999997 999999999998887 479999986543222111 1111111 111222221 232 2 26667
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc---ccCCCCCCCCCCCCCCCCCCChHH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS---VYGLNTQVPFSESHRTDQPASLYA 271 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~---vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (476)
|+||-.||...- ...+..+.+..|..-.+.+.+..++.+....++.+|.-. .|-.. ... ..++....|
T Consensus 73 divvitaG~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~-----k~s--g~p~~~viG 143 (312)
T cd05293 73 KVVIVTAGARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAW-----KLS--GLPKHRVIG 143 (312)
T ss_pred CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHH-----HHh--CCCHHHEEe
Confidence 999999997432 234567789999999999999999988776777777421 01000 000 001112222
Q ss_pred H-HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCC
Q 011841 272 A-TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG 305 (476)
Q Consensus 272 ~-sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~ 305 (476)
. +-+...++-..+++..+++..-++. .|+|..+
T Consensus 144 ~gt~Ld~~R~~~~la~~l~v~~~~v~~-~v~GeHG 177 (312)
T cd05293 144 SGCNLDSARFRYLIAERLGVAPSSVHG-WIIGEHG 177 (312)
T ss_pred cCchHHHHHHHHHHHHHhCCChhhEEE-EEeecCC
Confidence 2 2233344445555666777776664 5578754
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0066 Score=60.45 Aligned_cols=115 Identities=17% Similarity=0.077 Sum_probs=77.0
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+|.|+|++|.||..++-.|+..|. +++++|+... ... .....+.. ....+.... +.+++.+.++++ |+|
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a-~g~--a~DL~~~~--~~~~i~~~~--~~~~~~~~~~da--Div 71 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGA-AGV--AADLSHIP--TAASVKGFS--GEEGLENALKGA--DVV 71 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCC-cEE--EchhhcCC--cCceEEEec--CCCchHHHcCCC--CEE
Confidence 588999999999999999998874 7999988551 111 11111111 112222101 112245677877 999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|-.||.. +....+..+.+..|..-.+.+.+...+.+....||.+|-
T Consensus 72 vitaG~~--~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 72 VIPAGVP--RKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred EEeCCCC--CCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 9999973 223456678899999999999999888877656777664
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0035 Score=69.84 Aligned_cols=170 Identities=19% Similarity=0.168 Sum_probs=111.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhcCCceE--EEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVF--IVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~--~~~~Dl~d~~~l~~~~~~~ 192 (476)
...|..+|+||-|+-|-.|+.-|..+|.+ +++..|.--+.-......+ .....+|. +-.-|++..+....+++.+
T Consensus 1766 hpeksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vr--rWr~~GVqV~vsT~nitt~~ga~~Li~~s 1843 (2376)
T KOG1202|consen 1766 HPEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVR--RWRRRGVQVQVSTSNITTAEGARGLIEES 1843 (2376)
T ss_pred CccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHH--HHHhcCeEEEEecccchhhhhHHHHHHHh
Confidence 34578999999999999999999999986 4555553322111111122 22333444 4455777666666666654
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
.+-.|+|+|+.... +.+.++.++.-+.-+.||.+|=...++.-. -..||.+||++.=-++
T Consensus 1844 ~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN----------- 1912 (2376)
T KOG1202|consen 1844 NKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGN----------- 1912 (2376)
T ss_pred hhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCC-----------
Confidence 56888999986321 334455556666667778887766665432 2379999997752222
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcc
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV 300 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v 300 (476)
.+++-||-+..++|+++++-.. .|++-+.|.-|.|
T Consensus 1913 -~GQtNYG~aNS~MERiceqRr~-~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1913 -AGQTNYGLANSAMERICEQRRH-EGFPGTAIQWGAI 1947 (2376)
T ss_pred -CcccccchhhHHHHHHHHHhhh-cCCCcceeeeecc
Confidence 4667799999999999988444 5887777766553
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.022 Score=57.60 Aligned_cols=168 Identities=12% Similarity=0.112 Sum_probs=98.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++|.|+|+ |.||..++-.|+..|. ++++++++.+..............-.....+.. + .| ++ .++++ |+
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-~-~d---y~-~~~da--Di 108 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-S-TD---YA-VTAGS--DL 108 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-C-CC---HH-HhCCC--CE
Confidence 69999996 9999999999998874 799999865433222111111111111232222 1 12 22 36667 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc---ccCCCCCCCCCCCCCCCCCCChHHH-
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS---VYGLNTQVPFSESHRTDQPASLYAA- 272 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~---vyg~~~~~~~~E~~~~~~p~~~Y~~- 272 (476)
||-.||... ....+..+.+..|+.-.+.+.+..++.+....+|.+|--. +|-......+ ++....+.
T Consensus 109 VVitAG~~~--k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~~k~sg~-------p~~rviG~g 179 (350)
T PLN02602 109 CIVTAGARQ--IPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVAWKLSGF-------PANRVIGSG 179 (350)
T ss_pred EEECCCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHhCC-------CHHHEEeec
Confidence 999999732 2234566788999999999999999888776777777411 0100000000 11111111
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCC
Q 011841 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG 305 (476)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~ 305 (476)
+-+..-++...+++..|++..-++.. |+|..+
T Consensus 180 t~LDs~R~r~~lA~~l~v~~~~V~~~-ViGeHG 211 (350)
T PLN02602 180 TNLDSSRFRFLIADHLDVNAQDVQAY-IVGEHG 211 (350)
T ss_pred chHHHHHHHHHHHHHhCCCccceeee-EEecCC
Confidence 12223344445556668887777754 778754
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.016 Score=50.78 Aligned_cols=107 Identities=21% Similarity=0.190 Sum_probs=66.3
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCC--------------CCCchHHHHHHhh----hcCCceEEEEeecC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNS--------------YYDPSLKRARQKL----LQKHQVFIVEGDLN 180 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~--------------~~~~~~~~~~~~~----~~~~~v~~~~~Dl~ 180 (476)
+|+|.|+ |.+|.++++.|...|. +++++|...- ..-..+.....+. ...-.++.+..++.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 4899997 9999999999999997 6888875521 1111111111111 11223444555554
Q ss_pred CHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcccc
Q 011841 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVY 249 (476)
Q Consensus 181 d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vy 249 (476)
+. ...+.++.. |+||.+... ......+.+.|++.+.+ +|..++...+
T Consensus 80 ~~-~~~~~~~~~--diVi~~~d~-----------------~~~~~~l~~~~~~~~i~--~i~~~~~g~~ 126 (143)
T cd01483 80 ED-NLDDFLDGV--DLVIDAIDN-----------------IAVRRALNRACKELGIP--VIDAGGLGLG 126 (143)
T ss_pred hh-hHHHHhcCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEcCCCcE
Confidence 43 235666655 999998753 23345677889998864 7777765543
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.014 Score=58.17 Aligned_cols=167 Identities=17% Similarity=0.161 Sum_probs=96.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|+|.|.|+ |.+|..++..|+.+| ++|++++++.+....................+.. .|. +.++++ |+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d~----~~l~~a--Di 70 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GDY----ADCKGA--DV 70 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CCH----HHhCCC--CE
Confidence 57999998 999999999999999 6899999865433211111111110111222222 232 236666 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc---ccCCCCCCCCCCCCCCCCCCChHHH-
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS---VYGLNTQVPFSESHRTDQPASLYAA- 272 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~---vyg~~~~~~~~E~~~~~~p~~~Y~~- 272 (476)
||.+++.... ...+..+....|+.-...+++.+++.+....++.++.-. .|-.. +.. ..++...+|.
T Consensus 71 Viita~~~~~--~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~------~~s-g~p~~~viG~g 141 (308)
T cd05292 71 VVITAGANQK--PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAY------KLS-GLPPNRVIGSG 141 (308)
T ss_pred EEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHH------HHH-CcCHHHeeccc
Confidence 9999987321 234556778889999999999888877664566554311 00000 000 0011111222
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCC
Q 011841 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG 305 (476)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~ 305 (476)
+-+..-++-..+++..+++..-++ ++|+|..+
T Consensus 142 t~LDs~R~~~~la~~~~v~~~~v~-~~viGeHg 173 (308)
T cd05292 142 TVLDTARFRYLLGEHLGVDPRSVH-AYIIGEHG 173 (308)
T ss_pred chhhHHHHHHHHHHHhCCCcccee-ceeeccCC
Confidence 122233444455566788888776 55888754
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.013 Score=55.18 Aligned_cols=113 Identities=21% Similarity=0.180 Sum_probs=70.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCC---CCCC----------chHHHHHHh----hhcCCceEEEEe
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFN---SYYD----------PSLKRARQK----LLQKHQVFIVEG 177 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~---~~~~----------~~~~~~~~~----~~~~~~v~~~~~ 177 (476)
....+|+|.|+ |.+|..+++.|...|.. ++++|.+. +... ..+...... ....-.++.+..
T Consensus 26 L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 26 LKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred HhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 45678999996 99999999999999974 88888762 1111 011111111 112234555555
Q ss_pred ecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCC
Q 011841 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGL 251 (476)
Q Consensus 178 Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~ 251 (476)
.+++ +.+.++++++ |+||.+.- |...-..+.+.|.+. +. .+|+.+...-|+.
T Consensus 105 ~i~~-~~~~~~~~~~--DvVI~a~D-----------------~~~~r~~l~~~~~~~~~~--p~I~~~~~~~~~~ 157 (212)
T PRK08644 105 KIDE-DNIEELFKDC--DIVVEAFD-----------------NAETKAMLVETVLEHPGK--KLVAASGMAGYGD 157 (212)
T ss_pred ecCH-HHHHHHHcCC--CEEEECCC-----------------CHHHHHHHHHHHHHhCCC--CEEEeehhhccCC
Confidence 5654 5567788776 99999852 222334566778877 75 4777765544443
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.023 Score=56.93 Aligned_cols=117 Identities=15% Similarity=0.141 Sum_probs=77.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCC--ceEEEEeecCCHHHHHHhhccCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKH--QVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~--~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
+.++|.|+|| |.+|+.++..|+..| .+|+++|++.+..... ........... ...+. + -.| ++ .++++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~-~lDl~~~~~~~~~~~~i~-~-~~d---~~-~l~~A- 74 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGK-ALDLKHFSTLVGSNINIL-G-TNN---YE-DIKDS- 74 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhH-HHHHhhhccccCCCeEEE-e-CCC---HH-HhCCC-
Confidence 5679999997 999999999999988 6899999876543311 11111111111 12222 1 122 44 56777
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||..+|... .......+.+..|..-...+++.+.+...+..+|++|.
T Consensus 75 -DiVVitag~~~--~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 75 -DVVVITAGVQR--KEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred -CEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999998732 22344567888899888899988888876645777765
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0052 Score=52.60 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=56.9
Q ss_pred CEEEEECCCChhhHHHHHHHHH-CCCeEEEEeCCCC-CCC-chHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNS-YYD-PSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~-~G~~V~~~~R~~~-~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+|.|.|++|-+|+.+++.+.+ .|+++.+...... ... +....... ....++.+ .++++++++.+ |
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~--~~~~~~~v-------~~~l~~~~~~~--D 69 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAG--IGPLGVPV-------TDDLEELLEEA--D 69 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCT--SST-SSBE-------BS-HHHHTTH---S
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhC--cCCccccc-------chhHHHhcccC--C
Confidence 5899999999999999999999 5788666554332 111 11110000 00111211 14577788775 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
+||++.- -..+...++.|.+++. .+|.-+|
T Consensus 70 VvIDfT~------------------p~~~~~~~~~~~~~g~--~~ViGTT 99 (124)
T PF01113_consen 70 VVIDFTN------------------PDAVYDNLEYALKHGV--PLVIGTT 99 (124)
T ss_dssp EEEEES-------------------HHHHHHHHHHHHHHT---EEEEE-S
T ss_pred EEEEcCC------------------hHHhHHHHHHHHhCCC--CEEEECC
Confidence 9999872 3445677888888886 4554443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0043 Score=62.60 Aligned_cols=94 Identities=21% Similarity=0.085 Sum_probs=59.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCe---EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDG---VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~---V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
+++|+|.||||++|.+|++.|.++||. ++.+.+..+..... ...+..+...|+.+. .++++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l---------~~~g~~i~v~d~~~~-----~~~~v-- 64 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKEL---------SFKGKELKVEDLTTF-----DFSGV-- 64 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCee---------eeCCceeEEeeCCHH-----HHcCC--
Confidence 468999999999999999999998875 47777644322211 011234455566432 23455
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
|+||-+++.. .+..++....+.|. .+|=.|+..
T Consensus 65 DvVf~A~g~g------------------~s~~~~~~~~~~G~--~VIDlS~~~ 97 (334)
T PRK14874 65 DIALFSAGGS------------------VSKKYAPKAAAAGA--VVIDNSSAF 97 (334)
T ss_pred CEEEECCChH------------------HHHHHHHHHHhCCC--EEEECCchh
Confidence 9999888651 13345555555664 566667643
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.012 Score=56.14 Aligned_cols=113 Identities=16% Similarity=0.173 Sum_probs=70.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHH-HHH----HhhhcCCceEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLK-RAR----QKLLQKHQVFIV 175 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~-~~~----~~~~~~~~v~~~ 175 (476)
..+.+|+|.|+ |.+|.++++.|+..|. +++++|.+.-.. ....+ ... ......-.++.+
T Consensus 25 L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~ 103 (231)
T PRK08328 25 LKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF 103 (231)
T ss_pred HhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 45678999997 9999999999999996 677777543111 00001 110 111122244444
Q ss_pred EeecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC
Q 011841 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (476)
Q Consensus 176 ~~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~ 251 (476)
...+ +.+.+.+++++. |+||.+... ...-..+-++|++.+++ +|+.+..+.||.
T Consensus 104 ~~~~-~~~~~~~~l~~~--D~Vid~~d~-----------------~~~r~~l~~~~~~~~ip--~i~g~~~g~~G~ 157 (231)
T PRK08328 104 VGRL-SEENIDEVLKGV--DVIVDCLDN-----------------FETRYLLDDYAHKKGIP--LVHGAVEGTYGQ 157 (231)
T ss_pred eccC-CHHHHHHHHhcC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEeeccCEEE
Confidence 5455 445677788877 999998743 11123455678888874 888887777664
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.016 Score=56.36 Aligned_cols=115 Identities=13% Similarity=0.062 Sum_probs=77.4
Q ss_pred EEEECCCChhhHHHHHHHHHCC----CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 121 VLVTGAAGFVGSHCSLALKKRG----DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G----~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|.|+||+|.+|..++..|+..| .+|++.|++.+....................+.. .+++.+.++++ |+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~-----~~d~~~~~~~a--Di 73 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI-----TDDPYEAFKDA--DV 73 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEE-----CCchHHHhCCC--CE
Confidence 5789999999999999999998 7999999877554443332221111111122221 12245567777 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
||..++.... ...+.......|+.-.+.+++..++......++..|
T Consensus 74 Vv~t~~~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 74 VIITAGVGRK--PGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred EEECCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 9999987432 223445677789999999999998887665666665
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.013 Score=53.22 Aligned_cols=108 Identities=21% Similarity=0.172 Sum_probs=66.2
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCC---CCCC----------chHHHHHHhhh----cCCceEEEEeecCC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN---SYYD----------PSLKRARQKLL----QKHQVFIVEGDLND 181 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~---~~~~----------~~~~~~~~~~~----~~~~v~~~~~Dl~d 181 (476)
+|+|.|+ |.+|.++++.|+..|. +++++|.+. +... +.+.......+ ..-+++.+...+..
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 4899996 9999999999999998 499988765 1111 11111111111 22245555555544
Q ss_pred HHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccC
Q 011841 182 APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYG 250 (476)
Q Consensus 182 ~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg 250 (476)
+.+.++++++ |+||.+... ...-..+.+.|.+. +++ +|+.+....|+
T Consensus 80 -~~~~~~l~~~--DlVi~~~d~-----------------~~~r~~i~~~~~~~~~ip--~i~~~~~~~~~ 127 (174)
T cd01487 80 -NNLEGLFGDC--DIVVEAFDN-----------------AETKAMLAESLLGNKNKP--VVCASGMAGFG 127 (174)
T ss_pred -hhHHHHhcCC--CEEEECCCC-----------------HHHHHHHHHHHHHHCCCC--EEEEehhhccC
Confidence 5677788877 999998532 22223466666665 654 77665544444
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=50.72 Aligned_cols=110 Identities=22% Similarity=0.271 Sum_probs=70.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCC--------------CCchHHHHHHhhh----cCCceEEEEee
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY--------------YDPSLKRARQKLL----QKHQVFIVEGD 178 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~--------------~~~~~~~~~~~~~----~~~~v~~~~~D 178 (476)
.++|+|.|+ |.+|.++++.|...|. +++++|...=. .-..+.....+.+ ..-.+..+..+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 468999997 9999999999999997 68887754310 0111111211211 22345555556
Q ss_pred cCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 179 l~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
+ +.+...++++++ |+||.+... ...-..+.+.|++.+. .+|+.+..+.+|
T Consensus 81 ~-~~~~~~~~~~~~--d~vi~~~d~-----------------~~~~~~l~~~~~~~~~--p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 I-DEENIEELLKDY--DIVIDCVDS-----------------LAARLLLNEICREYGI--PFIDAGVNGFYG 130 (135)
T ss_dssp C-SHHHHHHHHHTS--SEEEEESSS-----------------HHHHHHHHHHHHHTT---EEEEEEEETTEE
T ss_pred c-ccccccccccCC--CEEEEecCC-----------------HHHHHHHHHHHHHcCC--CEEEEEeecCEE
Confidence 6 556778888776 999998643 2233456778999886 588777665544
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.012 Score=58.53 Aligned_cols=116 Identities=15% Similarity=0.072 Sum_probs=73.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|+|.|+|| |.+|..++..|+..|. +|++.++..+............... .....+.. -.| ++ .++++ |+
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~d---~~-~~~~a--Di 73 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG--TND---YE-DIAGS--DV 73 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe--CCC---HH-HHCCC--CE
Confidence 78999998 9999999999999875 9999999655432211111111110 11122211 122 32 35677 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
||.+++... ....+..+.+..|+.-...+++...+......+|.+|.
T Consensus 74 Vii~~~~p~--~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 74 VVITAGVPR--KPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred EEECCCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999998632 12234456677888888888888887776545777664
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.017 Score=54.91 Aligned_cols=112 Identities=21% Similarity=0.146 Sum_probs=69.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCC--------------CCchHHHHHHhhh----cCCceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY--------------YDPSLKRARQKLL----QKHQVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~--------------~~~~~~~~~~~~~----~~~~v~~~~ 176 (476)
....+|+|.|+ |.+|.++++.|...|. +++++|.+.-. .-..+.....+.+ ..-.++.+.
T Consensus 19 L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 19 LKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred HhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 45679999996 9999999999999996 56666533210 1111111111111 122455565
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
.++ +.+.+.++++++ |+||.+... ...-..+-++|.+.+++ +|+.+..+.+|
T Consensus 98 ~~i-~~~~~~~~~~~~--DvVi~~~d~-----------------~~~r~~l~~~~~~~~ip--~i~~g~~g~~g 149 (228)
T cd00757 98 ERL-DAENAEELIAGY--DLVLDCTDN-----------------FATRYLINDACVKLGKP--LVSGAVLGFEG 149 (228)
T ss_pred cee-CHHHHHHHHhCC--CEEEEcCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEeccCEE
Confidence 555 345677788776 999998753 12223566788888864 77776655444
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.019 Score=55.04 Aligned_cols=112 Identities=18% Similarity=0.163 Sum_probs=69.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCc--------------hHHHHHHhhhc--CCc--eEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDP--------------SLKRARQKLLQ--KHQ--VFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~--------------~~~~~~~~~~~--~~~--v~~~~ 176 (476)
....+|+|.|+ |.+|..+++.|+..|. +++++|.+.-.... .+.....+.+. .+. ++.+.
T Consensus 22 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 22 LKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 45678999997 9999999999999995 67777654422110 01111111111 233 44443
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
..+ +.+.+.+++++. |+||.+... ...-..+-++|.+.+++ +|+.++...+|
T Consensus 101 ~~i-~~~~~~~~~~~~--DlVvd~~D~-----------------~~~r~~ln~~~~~~~ip--~v~~~~~g~~G 152 (240)
T TIGR02355 101 AKL-DDAELAALIAEH--DIVVDCTDN-----------------VEVRNQLNRQCFAAKVP--LVSGAAIRMEG 152 (240)
T ss_pred ccC-CHHHHHHHhhcC--CEEEEcCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEecccEe
Confidence 334 345677788877 999998742 22234566889998875 88776655544
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.046 Score=54.76 Aligned_cols=119 Identities=11% Similarity=0.031 Sum_probs=77.6
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhhcc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
+.+.++|.|+|| |.+|..++..++..|. +|++++++.+.... .......... .....+.. -.| + +.+++
T Consensus 3 ~~~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~-~~ld~~~~~~~~~~~~~I~~--~~d---~-~~l~~ 74 (321)
T PTZ00082 3 MIKRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQG-KALDISHSNVIAGSNSKVIG--TNN---Y-EDIAG 74 (321)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhH-HHHHHHhhhhccCCCeEEEE--CCC---H-HHhCC
Confidence 345579999995 9999999999999995 89999987664321 1111111111 11223332 123 2 24577
Q ss_pred CCccEEEEccccCChhhhhc-----ChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 192 VPFTHVLHLAAQAGVRYAMQ-----NPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~~-----~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
+ |+||..+|..... .. +..+.+..|+.-...+++.+.+......++.+|-
T Consensus 75 a--DiVI~tag~~~~~--~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 75 S--DVVIVTAGLTKRP--GKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred C--CEEEECCCCCCCC--CCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 7 9999999874321 12 4466778899888899988888876546777775
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.015 Score=59.22 Aligned_cols=112 Identities=17% Similarity=0.054 Sum_probs=70.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHHh----hhcCCceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQK----LLQKHQVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~~----~~~~~~v~~~~ 176 (476)
....+|+|.|+ |.+|.++++.|+..|. +++++|.+.-.. -..+.....+ ....-.++.+.
T Consensus 26 L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 26 LFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 45679999997 9999999999999996 677777654110 0011111111 11122455555
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
..++ .+...++++++ |+||.+... ...-..+-++|.+.+++ +|+.+..+.+|
T Consensus 105 ~~i~-~~~~~~~~~~~--DvVvd~~d~-----------------~~~r~~~n~~c~~~~ip--~v~~~~~g~~g 156 (355)
T PRK05597 105 RRLT-WSNALDELRDA--DVILDGSDN-----------------FDTRHLASWAAARLGIP--HVWASILGFDA 156 (355)
T ss_pred eecC-HHHHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEEecCeE
Confidence 5554 35566778776 999998742 22223456788888875 88877655544
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.041 Score=51.17 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=54.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCC---CCCCCc----------hHHHHHHhhh----cCCceEEEEe
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNF---NSYYDP----------SLKRARQKLL----QKHQVFIVEG 177 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~---~~~~~~----------~~~~~~~~~~----~~~~v~~~~~ 177 (476)
...++|+|.|+ |.+|+.++..|+..|. +|++.|.+ .+.... .+.......+ ..-.++.+..
T Consensus 19 L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~ 97 (200)
T TIGR02354 19 LEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE 97 (200)
T ss_pred HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence 45678999997 8999999999999998 69999887 222111 1111111111 1234556666
Q ss_pred ecCCHHHHHHhhccCCccEEEEcc
Q 011841 178 DLNDAPLLTKLFDVVPFTHVLHLA 201 (476)
Q Consensus 178 Dl~d~~~l~~~~~~~~~d~Vi~~A 201 (476)
+++ .+.+.++++++ |+||.+.
T Consensus 98 ~i~-~~~~~~~~~~~--DlVi~a~ 118 (200)
T TIGR02354 98 KIT-EENIDKFFKDA--DIVCEAF 118 (200)
T ss_pred eCC-HhHHHHHhcCC--CEEEECC
Confidence 665 46677888877 9999983
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0096 Score=61.84 Aligned_cols=171 Identities=13% Similarity=0.077 Sum_probs=101.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC---C-C---eEEEEeCCCCCCCchHHHHHHhhhc-----CCceEEEEeecCCHH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR---G-D---GVLGLDNFNSYYDPSLKRARQKLLQ-----KHQVFIVEGDLNDAP 183 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~---G-~---~V~~~~R~~~~~~~~~~~~~~~~~~-----~~~v~~~~~Dl~d~~ 183 (476)
....+|+||||+|.||.+|+-.++.- | . .+++++.... .+.......+... ..++.+.. | +
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~--~~~l~G~amDL~D~a~pll~~v~i~~-~--~-- 193 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPEN--LEKLKGLVMEVEDLAFPLLRGISVTT-D--L-- 193 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCc--hhhHHHHHHHHHHhHHhhcCCcEEEE-C--C--
Confidence 44579999999999999999999873 4 2 3566665211 1111111111111 12344432 2 1
Q ss_pred HHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecCccc----cCCCCCCCC
Q 011841 184 LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP--QPSIVWASSSSV----YGLNTQVPF 257 (476)
Q Consensus 184 ~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~--~~~~V~~SS~~v----yg~~~~~~~ 257 (476)
.+.|+++ |+||-.||.. +....+..+..+.|..-...+.....+... . +|+.+.|--+ |- .
T Consensus 194 --~ea~~da--DvvIitag~p--rk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~-~VlVv~tNPvD~~t~i------~ 260 (452)
T cd05295 194 --DVAFKDA--HVIVLLDDFL--IKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDV-KVIVAGRTFLNLKTSI------L 260 (452)
T ss_pred --HHHhCCC--CEEEECCCCC--CCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEeCCcHHHHHHH------H
Confidence 3567777 9999999973 223346778899999999999999888776 4 5555543110 00 0
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
.+..+..++....|.+.....++...+++..|++...|+-.+|.|..+.
T Consensus 261 ~k~apgiP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~ 309 (452)
T cd05295 261 IKYAPSIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG 309 (452)
T ss_pred HHHcCCCCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC
Confidence 0000011222333344445445555666777888888888888887544
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.014 Score=59.96 Aligned_cols=112 Identities=20% Similarity=0.158 Sum_probs=69.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCC--------------CCchHHHHHHhhh-c-CCce--EEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY--------------YDPSLKRARQKLL-Q-KHQV--FIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~--------------~~~~~~~~~~~~~-~-~~~v--~~~~ 176 (476)
....+|+|.|+ |.+|.++++.|+..|. ++++++++.-. .-..+.....+.+ + .+.+ +.+.
T Consensus 133 l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 133 LLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred HhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 45678999986 9999999999999997 68888876210 0011111111111 1 2333 3444
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
..+. .+.+.++++++ |+||++... ...-..+-++|.+.+++ +|+.+..+.+|
T Consensus 212 ~~~~-~~~~~~~~~~~--D~Vv~~~d~-----------------~~~r~~ln~~~~~~~ip--~i~~~~~g~~g 263 (376)
T PRK08762 212 ERVT-SDNVEALLQDV--DVVVDGADN-----------------FPTRYLLNDACVKLGKP--LVYGAVFRFEG 263 (376)
T ss_pred ccCC-hHHHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEeccCEE
Confidence 3443 35667778766 999998743 11123466789999874 88877655443
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.017 Score=57.40 Aligned_cols=115 Identities=17% Similarity=0.131 Sum_probs=73.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHh-hhc-CCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQK-LLQ-KHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~-~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+|.|.|+ |.+|..++..|+.+|+ +|+++++..+. .........+ ... .....+.. -.| +++ ++++ |
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l-~~g~a~d~~~~~~~~~~~~~i~~--t~d---~~~-~~~a--D 71 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGI-PQGKALDMYEASPVGGFDTKVTG--TNN---YAD-TANS--D 71 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCCh-hHHHHHhhhhhhhccCCCcEEEe--cCC---HHH-hCCC--C
Confidence 68999997 9999999999999886 89999985432 1111111111 110 00111111 022 333 4666 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
+||-++|.... ...+..+.+..|..-.+.+++...+.+....+|.+|.
T Consensus 72 iVIitag~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 72 IVVITAGLPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred EEEEcCCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999996321 2234556888899999999998888776556777764
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0095 Score=59.95 Aligned_cols=96 Identities=20% Similarity=0.140 Sum_probs=56.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeE---EEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGV---LGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V---~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
++++|.|+||||++|..+++.|.+++|.+ ..+..... ..+.. ...+ ...++.+.+.. + ++++
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~-aG~~l--------~~~~---~~l~~~~~~~~-~-~~~v- 67 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSES-AGHSV--------PFAG---KNLRVREVDSF-D-FSQV- 67 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECccc-CCCee--------ccCC---cceEEeeCChH-H-hcCC-
Confidence 34799999999999999999999887643 33432211 11110 0112 12333333222 2 4555
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccc
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSV 248 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~v 248 (476)
|+|+-+++.. ....+++.+.+.|. ++|=.|+..=
T Consensus 68 -D~vFla~p~~------------------~s~~~v~~~~~~G~--~VIDlS~~fR 101 (336)
T PRK05671 68 -QLAFFAAGAA------------------VSRSFAEKARAAGC--SVIDLSGALP 101 (336)
T ss_pred -CEEEEcCCHH------------------HHHHHHHHHHHCCC--eEEECchhhc
Confidence 9999877530 12346777777775 5777777653
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.037 Score=55.10 Aligned_cols=167 Identities=15% Similarity=0.117 Sum_probs=100.0
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhh-c-CCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLL-Q-KHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~-~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
+|.|.|+ |.||..++..|+.+|. ++++++...+.............. . ...+.+..+| . +.++++ |
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~---y----~~~~~a--D 70 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD---Y----DDCADA--D 70 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC---H----HHhCCC--C
Confidence 4789998 9999999999998874 799999855433222111111111 1 1244454333 2 346666 9
Q ss_pred EEEEccccCChhhhhcC--hHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc---ccCCCCCCCCCCCCCCCCCCChH
Q 011841 196 HVLHLAAQAGVRYAMQN--PQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS---VYGLNTQVPFSESHRTDQPASLY 270 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~--~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~---vyg~~~~~~~~E~~~~~~p~~~Y 270 (476)
+||-.||...- ...+ ..+.+..|..-.+.++..+.+.+....++.+|--. .|-.... . ..++.-..
T Consensus 71 ivvitaG~~~k--pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~------s-g~p~~rvi 141 (307)
T cd05290 71 IIVITAGPSID--PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATE------F-DYPANKVI 141 (307)
T ss_pred EEEECCCCCCC--CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHH------h-CcChhhee
Confidence 99999997321 1223 47788999999999999999988764566665421 1100000 0 00111222
Q ss_pred HH-HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 271 AA-TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 271 ~~-sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
|. +-+..-++-..+++..+++..-++-. |+|..+.
T Consensus 142 G~gt~LDs~R~~~~la~~l~v~~~~V~~~-ViGeHGd 177 (307)
T cd05290 142 GTGTMLDTARLRRIVADKYGVDPKNVTGY-VLGEHGS 177 (307)
T ss_pred cccchHHHHHHHHHHHHHhCCCcccEEEE-EEecCCC
Confidence 22 34455555556666678888877754 8887643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.034 Score=53.48 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=68.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCc--------------hHHHHHHh----hhcCCceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDP--------------SLKRARQK----LLQKHQVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~--------------~~~~~~~~----~~~~~~v~~~~ 176 (476)
.+..+|+|.|+ |.+|..+++.|+..|. +++++|.+.-..+. .+.....+ ....-.++.+.
T Consensus 30 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 30 LKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred hcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 46679999998 9999999999999996 67777654321111 01111111 11122445555
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
..++ .+.+.++++++ |+||.+... ...-..+-++|.+.+. .+|+.++...+|
T Consensus 109 ~~i~-~~~~~~~~~~~--DiVi~~~D~-----------------~~~r~~ln~~~~~~~i--p~v~~~~~g~~G 160 (245)
T PRK05690 109 ARLD-DDELAALIAGH--DLVLDCTDN-----------------VATRNQLNRACFAAKK--PLVSGAAIRMEG 160 (245)
T ss_pred ccCC-HHHHHHHHhcC--CEEEecCCC-----------------HHHHHHHHHHHHHhCC--EEEEeeeccCCc
Confidence 5554 45567778876 999998742 2222356678888886 477765544433
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0028 Score=63.13 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=31.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
|+|.|+| .|.+|..++..|+++|++|++.+|..+
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 5799999 599999999999999999999999654
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.022 Score=53.00 Aligned_cols=114 Identities=18% Similarity=0.199 Sum_probs=70.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC---------C---c----hHHHHHH----hhhcCCceEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY---------D---P----SLKRARQ----KLLQKHQVFI 174 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~---------~---~----~~~~~~~----~~~~~~~v~~ 174 (476)
.+..+|+|.|++| +|.++++.|+..|. +++++|...-.. . . .+..... +....-.++.
T Consensus 17 L~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 17 LRSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred HhhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 4557899999855 99999999999996 588887653110 0 0 0111111 1112224555
Q ss_pred EEeecCC-HHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC
Q 011841 175 VEGDLND-APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (476)
Q Consensus 175 ~~~Dl~d-~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~ 251 (476)
+..++.+ .+...++++.+ |+||.+... ......+-+.|++.+++ +|+.++.+.||.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~--dvVi~~~d~-----------------~~~~~~ln~~c~~~~ip--~i~~~~~G~~G~ 152 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQKF--TLVIATEEN-----------------YERTAKVNDVCRKHHIP--FISCATYGLIGY 152 (198)
T ss_pred EecccccchhhHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEeecCEEE
Confidence 5555542 44566677765 999977432 22234566889999875 888888777664
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.025 Score=57.84 Aligned_cols=171 Identities=16% Similarity=0.146 Sum_probs=100.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-e----EEE--E--eCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHH
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-G----VLG--L--DNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLT 186 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~----V~~--~--~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~ 186 (476)
+..+|.|+||+|.+|.+++-.|+..|. . |.+ + +++.+......-...... ....++.+... | .
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~---~----y 115 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGID---P----Y 115 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecC---C----H
Confidence 346999999999999999999998863 2 333 3 554433222111111111 01113322222 2 2
Q ss_pred HhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCcc-----ccCCCCCCCCCCC
Q 011841 187 KLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS-----VYGLNTQVPFSES 260 (476)
Q Consensus 187 ~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~-----vyg~~~~~~~~E~ 260 (476)
+.++++ |+||-.||.. +....+..+.+..|+.-.+.+.....+.. ....+|.+|.-. +.-... ++
T Consensus 116 ~~~kda--DIVVitAG~p--rkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~~k~s--g~--- 186 (387)
T TIGR01757 116 EVFEDA--DWALLIGAKP--RGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIAMKNA--PN--- 186 (387)
T ss_pred HHhCCC--CEEEECCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHHHHHc--CC---
Confidence 356666 9999999973 22345677889999999999999998844 444677766421 110000 00
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
+ +....=..+.+..-++...+++..+++..-|+-++|+|..+.
T Consensus 187 --~-~~rviG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd 229 (387)
T TIGR01757 187 --I-PRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST 229 (387)
T ss_pred --C-cccEEEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC
Confidence 0 111111334555556666667777888887777788887553
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.03 Score=55.54 Aligned_cols=114 Identities=18% Similarity=0.138 Sum_probs=75.5
Q ss_pred EEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 121 VLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|.|.|+ |.+|..++..|+..| ++++++++..+....................+... .| . +.++++ |+||
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~---~-~~l~~a--DiVI 71 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GD---Y-ADAADA--DIVV 71 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CC---H-HHhCCC--CEEE
Confidence 468897 899999999999998 68999998665332222111111111112233221 22 2 356677 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
.++|... ....+..+.+..|+.-.+.+.+.+++.+....++.+|.
T Consensus 72 itag~p~--~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 72 ITAGAPR--KPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred EcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 9999732 22345677888999999999999998887656776664
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.031 Score=58.65 Aligned_cols=77 Identities=22% Similarity=0.273 Sum_probs=56.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~ 194 (476)
...++|+|+|+ |.+|+.+++.|.+.|++|++++++.+ ..........++.++.+|.+|.+.++++ ++.+
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~-------~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a-- 298 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPE-------RAEELAEELPNTLVLHGDGTDQELLEEEGIDEA-- 298 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH-------HHHHHHHHCCCCeEEECCCCCHHHHHhcCCccC--
Confidence 45689999998 99999999999999999999987432 1111111124678999999999988654 3444
Q ss_pred cEEEEccc
Q 011841 195 THVLHLAA 202 (476)
Q Consensus 195 d~Vi~~Ag 202 (476)
|.||-+..
T Consensus 299 ~~vi~~~~ 306 (453)
T PRK09496 299 DAFIALTN 306 (453)
T ss_pred CEEEECCC
Confidence 88886543
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.03 Score=51.96 Aligned_cols=112 Identities=16% Similarity=0.215 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHH----hhhcCCceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQ----KLLQKHQVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~----~~~~~~~v~~~~ 176 (476)
....+|+|.|+ |.+|.++++.|...|. +++++|...-.. -+.+..... +....-.++...
T Consensus 19 L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 19 LRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred HHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 45678999997 5599999999999996 577777543110 000111111 111122444444
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~ 251 (476)
..+.+ ...+.++++ |+||.+... ......+-++|++.+++ +|+.++.+.||.
T Consensus 98 ~~~~~--~~~~~~~~~--dvVi~~~~~-----------------~~~~~~ln~~c~~~~ip--~i~~~~~G~~G~ 149 (197)
T cd01492 98 DDISE--KPEEFFSQF--DVVVATELS-----------------RAELVKINELCRKLGVK--FYATGVHGLFGF 149 (197)
T ss_pred cCccc--cHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEecCCEEE
Confidence 44442 244566666 999987532 22234556789999875 888887776654
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.026 Score=54.03 Aligned_cols=224 Identities=20% Similarity=0.126 Sum_probs=125.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEE---EEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVL---GLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~---~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
..+.+|.|.||.|+||+-|...|... ..|. +.|..+.. -...+. .+-+-.......+-++.++++++++
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~n-p~Vs~LaLYDi~~~~------GVaaDl-SHI~T~s~V~g~~g~~~L~~al~~a 97 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLN-PLVSELALYDIANTP------GVAADL-SHINTNSSVVGFTGADGLENALKGA 97 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcC-cccceeeeeecccCC------cccccc-cccCCCCceeccCChhHHHHHhcCC
Confidence 45568999999999999999877644 3332 22221100 000000 0000011112223456899999999
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCC----CCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPF----SESHRTDQPAS 268 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~----~E~~~~~~p~~ 268 (476)
|+||--||. ++-.--..++.|++|..-...|..++.+.-....+.++|-- | +...|+ ....-..+|..
T Consensus 98 --dvVvIPAGV--PRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNP-V---NstVPIaaevlKk~G~ydpkk 169 (345)
T KOG1494|consen 98 --DVVVIPAGV--PRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNP-V---NSTVPIAAEVLKKAGVYDPKK 169 (345)
T ss_pred --CEEEecCCC--CCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCc-c---cccchHHHHHHHHcCCCCccc
Confidence 999999997 32223345678999999999999998887766566666641 1 111111 11112346667
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcE-EEEeeCcccCC--------------CCC-CCCcHHHHHHHHHcCCceEEEeeCCC
Q 011841 269 LYAATKKAGEEIAHTYNHIYGLAL-TGLRFFTVYGP--------------WGR-PDMAYFFFTKDILQGKTIDVYKTQDD 332 (476)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~-~ilRp~~v~G~--------------~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (476)
.+|.+.+..-+.-.-+.+..+++- .-+..+.|=|. ..+ .+..+..+..++..++.-.+-...|.
T Consensus 170 lfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGa 249 (345)
T KOG1494|consen 170 LFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGA 249 (345)
T ss_pred eeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCC
Confidence 788887765554443333334432 11222222221 111 11245678888888887766666666
Q ss_pred CceeEeceeHH-HHHHHHHHHHhh
Q 011841 333 REVARDFTYID-DVVKGCVGALDT 355 (476)
Q Consensus 333 ~~~~~~~v~v~-Dva~a~~~~l~~ 355 (476)
|....+.-|.. -.|..++..+..
T Consensus 250 GSATLSMAyAga~fa~s~lrgl~G 273 (345)
T KOG1494|consen 250 GSATLSMAYAGAKFADSLLRGLNG 273 (345)
T ss_pred CchhhhHHHHHHHHHHHHHHHhCC
Confidence 76666666553 234455555544
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.039 Score=53.99 Aligned_cols=112 Identities=12% Similarity=0.017 Sum_probs=68.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHHh----hhcCCceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQK----LLQKHQVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~~----~~~~~~v~~~~ 176 (476)
....+|+|.|+ |.+|..+++.|+..|. +++++|.+.-.. -..+.....+ ....-+|+.+.
T Consensus 25 L~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~ 103 (287)
T PRK08223 25 LRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP 103 (287)
T ss_pred HhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 45678999997 9999999999999996 566666543110 0011111111 11222455555
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccc
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSV 248 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~v 248 (476)
..++ ++.+.++++++ |+||++.-.. ++..-..+-++|.+.+++ +|+.+....
T Consensus 104 ~~l~-~~n~~~ll~~~--DlVvD~~D~~---------------~~~~r~~ln~~c~~~~iP--~V~~~~~g~ 155 (287)
T PRK08223 104 EGIG-KENADAFLDGV--DVYVDGLDFF---------------EFDARRLVFAACQQRGIP--ALTAAPLGM 155 (287)
T ss_pred cccC-ccCHHHHHhCC--CEEEECCCCC---------------cHHHHHHHHHHHHHcCCC--EEEEeccCC
Confidence 5554 34577788877 9999765210 112234566789999875 888765443
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.032 Score=56.98 Aligned_cols=112 Identities=20% Similarity=0.196 Sum_probs=71.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHHhhh----cCCceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQKLL----QKHQVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~~~~----~~~~v~~~~ 176 (476)
....+|+|.|+ |.+|..+++.|+..|. +++++|.+.-.. ...+.......+ ..-.++.+.
T Consensus 39 l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 117 (370)
T PRK05600 39 LHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR 117 (370)
T ss_pred hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence 45678999997 9999999999999995 788888653110 011111111111 122455555
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
..++ .+.+.++++++ |+||.+... ...-..+-++|.+.+++ +|+.+..+.+|
T Consensus 118 ~~i~-~~~~~~~~~~~--DlVid~~Dn-----------------~~~r~~in~~~~~~~iP--~v~~~~~g~~G 169 (370)
T PRK05600 118 ERLT-AENAVELLNGV--DLVLDGSDS-----------------FATKFLVADAAEITGTP--LVWGTVLRFHG 169 (370)
T ss_pred eecC-HHHHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEEecCEE
Confidence 5564 45677788877 999998742 23333556778888874 77777655444
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.039 Score=47.63 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=62.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++++|++.|. | -|..+++.|.+.|++|+++|.+... .+.....++.++.+|+.+++. ++-+++ |.
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~a---------V~~a~~~~~~~v~dDlf~p~~--~~y~~a--~l 80 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKA---------VEKAKKLGLNAFVDDLFNPNL--EIYKNA--KL 80 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHH---------HHHHHHhCCeEEECcCCCCCH--HHHhcC--CE
Confidence 4578999996 6 8999999999999999999984431 111123378999999988652 233444 77
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~ 237 (476)
|+-+-- +. +-...+++.|++.+..
T Consensus 81 iysirp----------p~-------el~~~~~~la~~~~~~ 104 (134)
T PRK04148 81 IYSIRP----------PR-------DLQPFILELAKKINVP 104 (134)
T ss_pred EEEeCC----------CH-------HHHHHHHHHHHHcCCC
Confidence 765432 11 2235788999999986
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.083 Score=51.34 Aligned_cols=111 Identities=14% Similarity=0.185 Sum_probs=66.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCC----------c----hHHHHHHhhhc--CCceEEEEe-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYD----------P----SLKRARQKLLQ--KHQVFIVEG- 177 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~----------~----~~~~~~~~~~~--~~~v~~~~~- 177 (476)
..+.+|+|.|+ |.+|.++++.|+..| -++++++.+.-... . .+.....+.+. .+.+++...
T Consensus 28 L~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 28 FADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred hcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 56678999996 999999999999999 57888775431110 0 00111111111 233333332
Q ss_pred ecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 178 Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
+..+++.+.+++.. ++|+||.+... +..-..|.+.|++.+++ ||.+..++
T Consensus 107 ~~i~~e~~~~ll~~-~~D~VIdaiD~-----------------~~~k~~L~~~c~~~~ip--~I~~gGag 156 (268)
T PRK15116 107 DFITPDNVAEYMSA-GFSYVIDAIDS-----------------VRPKAALIAYCRRNKIP--LVTTGGAG 156 (268)
T ss_pred cccChhhHHHHhcC-CCCEEEEcCCC-----------------HHHHHHHHHHHHHcCCC--EEEECCcc
Confidence 23345666666642 45999998753 22234678889998874 66555444
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.042 Score=54.60 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=68.9
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHHhhh----cCCceEEEEeecC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQKLL----QKHQVFIVEGDLN 180 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~~~~----~~~~v~~~~~Dl~ 180 (476)
+|||.|+ |.||.++++.|+..|. +++++|.+.-.. .+.+.....+.+ ..-.++.+..++.
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 5899997 9999999999999996 577776543110 111111111111 2234666666777
Q ss_pred CHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 181 d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
+.....+++++. |+||.+.- |...-..+-+.|...++. +|...+.+.+|
T Consensus 80 ~~~~~~~f~~~~--DvVv~a~D-----------------n~~ar~~in~~c~~~~ip--~I~~gt~G~~G 128 (312)
T cd01489 80 DPDFNVEFFKQF--DLVFNALD-----------------NLAARRHVNKMCLAADVP--LIESGTTGFLG 128 (312)
T ss_pred CccchHHHHhcC--CEEEECCC-----------------CHHHHHHHHHHHHHCCCC--EEEEecCccee
Confidence 644445677766 99998763 233344566778888864 88877766655
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.037 Score=55.65 Aligned_cols=76 Identities=28% Similarity=0.239 Sum_probs=49.1
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC---HHHHHHhhccCCc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND---APLLTKLFDVVPF 194 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~l~~~~~~~~~ 194 (476)
+.+|||+||+|.+|...++.+...|+.|++++..++ +.+.....+...+ .|..+ .+.+.++..+.++
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~---------k~~~~~~lGAd~v-i~y~~~~~~~~v~~~t~g~gv 212 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSE---------KLELLKELGADHV-INYREEDFVEQVRELTGGKGV 212 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHH---------HHHHHHhcCCCEE-EcCCcccHHHHHHHHcCCCCc
Confidence 789999999999999999999999976666654221 1112222222111 12222 3345556655567
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+|++..|.
T Consensus 213 Dvv~D~vG~ 221 (326)
T COG0604 213 DVVLDTVGG 221 (326)
T ss_pred eEEEECCCH
Confidence 999999875
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.015 Score=56.40 Aligned_cols=76 Identities=14% Similarity=0.202 Sum_probs=59.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
....+|++.| +|-+|..++-++.+.|.+|+++||......-.. --.-+..|+.|.+.++.+++..+||
T Consensus 10 ~~a~kvmLLG-SGELGKEvaIe~QRLG~eViAVDrY~~APAmqV-----------Ahrs~Vi~MlD~~al~avv~rekPd 77 (394)
T COG0027 10 PQATKVMLLG-SGELGKEVAIEAQRLGVEVIAVDRYANAPAMQV-----------AHRSYVIDMLDGDALRAVVEREKPD 77 (394)
T ss_pred CCCeEEEEec-CCccchHHHHHHHhcCCEEEEecCcCCChhhhh-----------hhheeeeeccCHHHHHHHHHhhCCC
Confidence 4556899998 699999999999999999999999655321110 1123567999999999999999999
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+||--.-.
T Consensus 78 ~IVpEiEA 85 (394)
T COG0027 78 YIVPEIEA 85 (394)
T ss_pred eeeehhhh
Confidence 99865543
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.028 Score=43.85 Aligned_cols=56 Identities=27% Similarity=0.419 Sum_probs=41.4
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC---CchHHHHHHhhhcCCceEEEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVE 176 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~---~~~~~~~~~~~~~~~~v~~~~ 176 (476)
+|+|.|| |++|-.++..|.+.|.+|+++.|..... ++.......+.+...+++++.
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 5788896 9999999999999999999999987655 333333334444445666654
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.034 Score=60.71 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=67.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~ 196 (476)
..+|+|.|. |-+|+.+++.|.++|++|++++.+.+ ..+.....+..++.||.+|++.++++ ++++ |.
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~---------~v~~~~~~g~~v~~GDat~~~~L~~agi~~A--~~ 467 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDIS---------AVNLMRKYGYKVYYGDATQLELLRAAGAEKA--EA 467 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHH---------HHHHHHhCCCeEEEeeCCCHHHHHhcCCccC--CE
Confidence 467999995 99999999999999999999997432 11222234788999999999988875 4444 88
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIV 241 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V 241 (476)
||-+... -.....+++.+++.....+++
T Consensus 468 vv~~~~d-----------------~~~n~~i~~~~r~~~p~~~Ii 495 (601)
T PRK03659 468 IVITCNE-----------------PEDTMKIVELCQQHFPHLHIL 495 (601)
T ss_pred EEEEeCC-----------------HHHHHHHHHHHHHHCCCCeEE
Confidence 8866532 122335667777776554555
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.029 Score=58.91 Aligned_cols=76 Identities=22% Similarity=0.204 Sum_probs=50.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+++|+|||++| +|..+++.|+++|++|++.++......+.. ..+...++.+..++. ... ++.. .+|.
T Consensus 4 ~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~-----~~l~~~g~~~~~~~~--~~~---~~~~-~~d~ 71 (447)
T PRK02472 4 QNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEA-----QELLEEGIKVICGSH--PLE---LLDE-DFDL 71 (447)
T ss_pred CCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHH-----HHHHhcCCEEEeCCC--CHH---HhcC-cCCE
Confidence 568999999976 999999999999999999987543222111 112233566554432 111 1222 3599
Q ss_pred EEEccccC
Q 011841 197 VLHLAAQA 204 (476)
Q Consensus 197 Vi~~Ag~~ 204 (476)
||+.+|..
T Consensus 72 vV~s~gi~ 79 (447)
T PRK02472 72 MVKNPGIP 79 (447)
T ss_pred EEECCCCC
Confidence 99999873
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.035 Score=53.82 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=53.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCC-CCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFN-SYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|+|.|+|++|.+|+.+++.+.+. +.+++++.... +..... . ..++...++++++++. +|+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~---------~-------~~~i~~~~dl~~ll~~--~Dv 63 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ---------G-------ALGVAITDDLEAVLAD--ADV 63 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc---------C-------CCCccccCCHHHhccC--CCE
Confidence 68999999999999999998875 67877755322 211110 1 1122223446666654 599
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIV 241 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V 241 (476)
||+++.. .....++..|.++|. ++|
T Consensus 64 Vid~t~p------------------~~~~~~~~~al~~G~--~vv 88 (257)
T PRK00048 64 LIDFTTP------------------EATLENLEFALEHGK--PLV 88 (257)
T ss_pred EEECCCH------------------HHHHHHHHHHHHcCC--CEE
Confidence 9998843 112456677777775 455
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.012 Score=52.06 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=47.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
.++++|+|+|+ |.+|..+++.|.+.| ++|++.+|+.+.. ... .+.. +...+..+..+. .++++++
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~----~~~-~~~~---~~~~~~~~~~~~---~~~~~~~-- 82 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKA----KAL-AERF---GELGIAIAYLDL---EELLAEA-- 82 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHH----HHH-HHHH---hhcccceeecch---hhccccC--
Confidence 35689999997 999999999999996 7899999843311 111 1111 111112233343 3335555
Q ss_pred cEEEEccccC
Q 011841 195 THVLHLAAQA 204 (476)
Q Consensus 195 d~Vi~~Ag~~ 204 (476)
|+||++....
T Consensus 83 Dvvi~~~~~~ 92 (155)
T cd01065 83 DLIINTTPVG 92 (155)
T ss_pred CEEEeCcCCC
Confidence 9999998763
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.02 Score=57.93 Aligned_cols=77 Identities=22% Similarity=0.198 Sum_probs=52.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc--cC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD--VV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 192 (476)
..++.|||.||+|.+|++.++-+...| ..|+.+.. .+ ..++...-+.. ...|..+++.++.+.+ +.
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s-~e---------~~~l~k~lGAd-~vvdy~~~~~~e~~kk~~~~ 224 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACS-KE---------KLELVKKLGAD-EVVDYKDENVVELIKKYTGK 224 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcc-cc---------hHHHHHHcCCc-EeecCCCHHHHHHHHhhcCC
Confidence 467899999999999999999999999 45555443 22 11111111222 2247777665555555 45
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+|++|+|.
T Consensus 225 ~~DvVlD~vg~ 235 (347)
T KOG1198|consen 225 GVDVVLDCVGG 235 (347)
T ss_pred CccEEEECCCC
Confidence 78999999987
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.046 Score=54.91 Aligned_cols=36 Identities=33% Similarity=0.379 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
..+.+|||+||+|.+|..+++.+...|.+|+++++.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 457899999999999999999999999999998873
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.033 Score=56.35 Aligned_cols=101 Identities=12% Similarity=0.037 Sum_probs=58.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEE-EeecCCHHHHHHhhccCCcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIV-EGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~l~~~~~~~~~d 195 (476)
+++|+|+||||++|+.+++.|.+. +++++++.+..+... ..... . +++... ..++.+.+.. .++++ |
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~-~l~~~---~---~~~~~~~~~~~~~~~~~--~~~~v--D 70 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGK-PLSDV---H---PHLRGLVDLVLEPLDPE--ILAGA--D 70 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCc-chHHh---C---cccccccCceeecCCHH--HhcCC--C
Confidence 379999999999999999999987 678877766322111 11110 0 111111 1123232222 33444 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcccc
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVY 249 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vy 249 (476)
+|+-+... .....++..+.++|. ++|=.|+..=+
T Consensus 71 ~Vf~alP~------------------~~~~~~v~~a~~aG~--~VID~S~~fR~ 104 (343)
T PRK00436 71 VVFLALPH------------------GVSMDLAPQLLEAGV--KVIDLSADFRL 104 (343)
T ss_pred EEEECCCc------------------HHHHHHHHHHHhCCC--EEEECCcccCC
Confidence 99987753 112455666666664 78888876543
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.059 Score=55.60 Aligned_cols=113 Identities=20% Similarity=0.126 Sum_probs=70.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCC--------------CCchHHHHHHhhhc--CC--ceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY--------------YDPSLKRARQKLLQ--KH--QVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~--------------~~~~~~~~~~~~~~--~~--~v~~~~ 176 (476)
....+|+|.|+ |.+|..+++.|+..|. +++++|.+.-. .-..+.....+.+. .+ +++.+.
T Consensus 40 L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 118 (392)
T PRK07878 40 LKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHE 118 (392)
T ss_pred HhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEe
Confidence 35568999997 9999999999999996 56666643211 00011111111111 22 344455
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~ 251 (476)
.+++. +...++++++ |+||.+... ...-..+-++|.+.+++ +|+.+..+.+|.
T Consensus 119 ~~i~~-~~~~~~~~~~--D~Vvd~~d~-----------------~~~r~~ln~~~~~~~~p--~v~~~~~g~~G~ 171 (392)
T PRK07878 119 FRLDP-SNAVELFSQY--DLILDGTDN-----------------FATRYLVNDAAVLAGKP--YVWGSIYRFEGQ 171 (392)
T ss_pred ccCCh-hHHHHHHhcC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEeccCEEE
Confidence 55543 4566778876 999987632 22233466788888864 888887766663
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.022 Score=51.44 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=47.0
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
...+++|+|+|+++.+|..+++.|.++|.+|+++.|. .+++.+.+.++
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~------------------------------~~~l~~~l~~a-- 88 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK------------------------------TKNLKEHTKQA-- 88 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC------------------------------chhHHHHHhhC--
Confidence 3688999999996678999999999999999999872 13455677777
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||.+.+.
T Consensus 89 DiVIsat~~ 97 (168)
T cd01080 89 DIVIVAVGK 97 (168)
T ss_pred CEEEEcCCC
Confidence 999998876
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.027 Score=58.01 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=51.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH----HHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA----PLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~----~~l~~~~~~ 191 (476)
.++|+|||||+...+|..+++.|.+.|++|++++....... ....... +...+...-.|. +.+.++++.
T Consensus 2 ~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~-----~~s~~~d--~~~~~p~p~~d~~~~~~~L~~i~~~ 74 (389)
T PRK06849 2 NTKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLS-----RFSRAVD--GFYTIPSPRWDPDAYIQALLSIVQR 74 (389)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHH-----HHHHhhh--heEEeCCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999987432111 0111111 222221122233 345556666
Q ss_pred CCccEEEEccc
Q 011841 192 VPFTHVLHLAA 202 (476)
Q Consensus 192 ~~~d~Vi~~Ag 202 (476)
.++|+||-...
T Consensus 75 ~~id~vIP~~e 85 (389)
T PRK06849 75 ENIDLLIPTCE 85 (389)
T ss_pred cCCCEEEECCh
Confidence 67899998764
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.07 Score=50.88 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=67.8
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHHh----hhcCCceEEEEeecC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQK----LLQKHQVFIVEGDLN 180 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~~----~~~~~~v~~~~~Dl~ 180 (476)
+|||.|+ |.+|.++++.|+..|. +++++|.+.=.. -+.+.....+ ....-+++.+..++.
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 4899995 9999999999999996 577776543110 0111111111 112234666666775
Q ss_pred CHHHH-HHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 181 DAPLL-TKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 181 d~~~l-~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
+.... ..++++. |+||.+.. |+..-..+-+.|.+.+++ +|..++.+.+|
T Consensus 80 ~~~~~~~~f~~~~--DvVi~a~D-----------------n~~aR~~ln~~c~~~~ip--lI~~g~~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQF--HIIVNALD-----------------NIIARRYVNGMLIFLIVP--LIESGTEGFKG 129 (234)
T ss_pred hhhhchHHHHhCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCCC--EEEEcccCCce
Confidence 54333 4566765 99998753 344445667788888864 88877766555
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.04 Score=51.94 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=73.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC---CchHH-----------HHHHhhhc--CCceEEEEe-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY---DPSLK-----------RARQKLLQ--KHQVFIVEG- 177 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~---~~~~~-----------~~~~~~~~--~~~v~~~~~- 177 (476)
.++-+|+|.|. |++|++.+++|++.|. +++++|-+.=.. ..... ....+... .+..++...
T Consensus 28 l~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~ 106 (263)
T COG1179 28 LKQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIN 106 (263)
T ss_pred HhhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehH
Confidence 45668999997 9999999999999986 455555322110 01111 11111111 244444444
Q ss_pred ecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCC
Q 011841 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT 253 (476)
Q Consensus 178 Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~ 253 (476)
|.-+++.+++++.. .||+||++.- |+..-..|+..|++.+.+ ++||.++-+..+
T Consensus 107 ~f~t~en~~~~~~~-~~DyvIDaiD-----------------~v~~Kv~Li~~c~~~ki~----vIss~Gag~k~D 160 (263)
T COG1179 107 DFITEENLEDLLSK-GFDYVIDAID-----------------SVRAKVALIAYCRRNKIP----VISSMGAGGKLD 160 (263)
T ss_pred hhhCHhHHHHHhcC-CCCEEEEchh-----------------hhHHHHHHHHHHHHcCCC----EEeeccccCCCC
Confidence 45577888888876 7899999862 566667899999998763 456666544443
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.026 Score=56.40 Aligned_cols=82 Identities=13% Similarity=0.070 Sum_probs=49.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh--hcCCceE--EEEeecCCHHHHHHhhccCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVF--IVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~--~~~~Dl~d~~~l~~~~~~~~ 193 (476)
-++|.|.|+ |.+|..++..|+..|++|++.++..+..+.......... +...+.. .....+.-..+++++++++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~a- 84 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA- 84 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCC-
Confidence 368999996 999999999999999999999986643332222111110 1011110 0001111122466777777
Q ss_pred ccEEEEccc
Q 011841 194 FTHVLHLAA 202 (476)
Q Consensus 194 ~d~Vi~~Ag 202 (476)
|.||-+.-
T Consensus 85 -DlViEavp 92 (321)
T PRK07066 85 -DFIQESAP 92 (321)
T ss_pred -CEEEECCc
Confidence 99998863
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.055 Score=52.02 Aligned_cols=93 Identities=12% Similarity=-0.006 Sum_probs=73.0
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
.++|||.||| .=|+.|++.|.++|++|++.+-..... ....++.++.+-+.|.+.+.+++...+++.|
T Consensus 2 ~~~IlvlgGT-~egr~la~~L~~~g~~v~~Svat~~g~-----------~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~V 69 (248)
T PRK08057 2 MPRILLLGGT-SEARALARALAAAGVDIVLSLAGRTGG-----------PADLPGPVRVGGFGGAEGLAAYLREEGIDLV 69 (248)
T ss_pred CceEEEEech-HHHHHHHHHHHhCCCeEEEEEccCCCC-----------cccCCceEEECCCCCHHHHHHHHHHCCCCEE
Confidence 4689999986 469999999999999988887533211 2234778888998899999999999899999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~ 237 (476)
|+..=+. -..-+.++.++|++.+++
T Consensus 70 IDATHPf---------------A~~is~~a~~ac~~~~ip 94 (248)
T PRK08057 70 IDATHPY---------------AAQISANAAAACRALGIP 94 (248)
T ss_pred EECCCcc---------------HHHHHHHHHHHHHHhCCc
Confidence 9976331 123367889999999985
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.065 Score=52.15 Aligned_cols=106 Identities=20% Similarity=0.199 Sum_probs=67.2
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcC-CceEEEEeecCCHHHHHHhhc-c
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK-HQVFIVEGDLNDAPLLTKLFD-V 191 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~~~~-~ 191 (476)
++.++.+|+|+||+|-+|+-+.+--.-+|++|+++.-+.+ +-+++.. .+.. .-.|..+++ +.+.++ .
T Consensus 147 qpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~e---------K~~~l~~~lGfD-~~idyk~~d-~~~~L~~a 215 (340)
T COG2130 147 QPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAE---------KCDFLTEELGFD-AGIDYKAED-FAQALKEA 215 (340)
T ss_pred CCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHH---------HHHHHHHhcCCc-eeeecCccc-HHHHHHHH
Confidence 4457889999999999999998888888999999986332 2222221 1111 112433332 222222 2
Q ss_pred C--CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHH-hcCCCCeEEEecCccccCCC
Q 011841 192 V--PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK-SVNPQPSIVWASSSSVYGLN 252 (476)
Q Consensus 192 ~--~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~-~~~~~~~~V~~SS~~vyg~~ 252 (476)
+ .+|+.+.|.|. .+++++. ..+...||+.+.-++-|...
T Consensus 216 ~P~GIDvyfeNVGg----------------------~v~DAv~~~ln~~aRi~~CG~IS~YN~~ 257 (340)
T COG2130 216 CPKGIDVYFENVGG----------------------EVLDAVLPLLNLFARIPVCGAISQYNAP 257 (340)
T ss_pred CCCCeEEEEEcCCc----------------------hHHHHHHHhhccccceeeeeehhhcCCC
Confidence 2 46999999986 3444432 22333489999999988765
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.077 Score=58.60 Aligned_cols=106 Identities=16% Similarity=0.084 Sum_probs=69.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCC-------------chHHHHHHh----hhcCCceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYD-------------PSLKRARQK----LLQKHQVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~-------------~~~~~~~~~----~~~~~~v~~~~ 176 (476)
..+.+|+|.|+ | +|++++..|+..|- +++++|.+.=... ..+....++ ....-+|+.+.
T Consensus 105 L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 105 LGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 45679999999 7 99999999999994 6777775431110 001111111 11223566666
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
..++ ++.+.++++++ |+||.+.- |+..=..|.++|.+.++. +|+.++
T Consensus 183 ~~i~-~~n~~~~l~~~--DlVvD~~D-----------------~~~~R~~ln~~a~~~~iP--~i~~~~ 229 (722)
T PRK07877 183 DGLT-EDNVDAFLDGL--DVVVEECD-----------------SLDVKVLLREAARARRIP--VLMATS 229 (722)
T ss_pred ccCC-HHHHHHHhcCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCCC--EEEEcC
Confidence 6666 67889999887 99999873 222233455788999875 777665
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.026 Score=57.03 Aligned_cols=68 Identities=19% Similarity=0.104 Sum_probs=43.9
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEE---EEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVL---GLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~---~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
+|+|.||||++|..|++.|.++||.+. .+.+..+..... ...+......|+. . ..++++ |+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~---------~~~~~~~~~~~~~-~----~~~~~~--D~ 64 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKV---------TFKGKELEVNEAK-I----ESFEGI--DI 64 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCee---------eeCCeeEEEEeCC-h----HHhcCC--CE
Confidence 489999999999999999999888654 333533221111 1123455555663 1 224555 99
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
||-+++.
T Consensus 65 v~~a~g~ 71 (339)
T TIGR01296 65 ALFSAGG 71 (339)
T ss_pred EEECCCH
Confidence 9999875
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.042 Score=55.71 Aligned_cols=99 Identities=12% Similarity=0.054 Sum_probs=56.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHC-CCeEEEE-eCCCCCCCchHHHHHHhhhcCCceEEE-EeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGL-DNFNSYYDPSLKRARQKLLQKHQVFIV-EGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~-~R~~~~~~~~~~~~~~~~~~~~~v~~~-~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+|.|.||||++|..+++.|.+. +.+++.+ ++..+... ..... . +.+... ..++.+. +.+++.+++ |
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk-~~~~~---~---~~l~~~~~~~~~~~-~~~~~~~~~--D 70 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGK-PVSEV---H---PHLRGLVDLNLEPI-DEEEIAEDA--D 70 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCC-ChHHh---C---ccccccCCceeecC-CHHHhhcCC--C
Confidence 58999999999999999999987 5687744 43221111 11110 1 111111 1112111 123344444 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
+|+-+.... ....++..+.+.|. ++|=.|+..
T Consensus 71 vVf~alP~~------------------~s~~~~~~~~~~G~--~VIDlS~~f 102 (346)
T TIGR01850 71 VVFLALPHG------------------VSAELAPELLAAGV--KVIDLSADF 102 (346)
T ss_pred EEEECCCch------------------HHHHHHHHHHhCCC--EEEeCChhh
Confidence 999887541 23466666666673 799888865
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.1 Score=48.76 Aligned_cols=89 Identities=13% Similarity=0.093 Sum_probs=60.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++++|||.|| |-+|..-++.|++.|++|++++.... .......+..++.++..+.... .++++ +
T Consensus 7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~-------~~l~~l~~~~~i~~~~~~~~~~-----dl~~~--~ 71 (205)
T TIGR01470 7 LEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELE-------SELTLLAEQGGITWLARCFDAD-----ILEGA--F 71 (205)
T ss_pred cCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCC-------HHHHHHHHcCCEEEEeCCCCHH-----HhCCc--E
Confidence 46789999997 99999999999999999999975322 1222233345788888776532 24555 7
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCC
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~ 236 (476)
.||-+.+.. +. ...+...|++.++
T Consensus 72 lVi~at~d~-------------~l----n~~i~~~a~~~~i 95 (205)
T TIGR01470 72 LVIAATDDE-------------EL----NRRVAHAARARGV 95 (205)
T ss_pred EEEECCCCH-------------HH----HHHHHHHHHHcCC
Confidence 777554321 11 2367777877664
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.04 Score=56.83 Aligned_cols=74 Identities=15% Similarity=0.220 Sum_probs=55.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+|+|+|+|+ |.+|..+++.+.+.|++|++++......... . .. ..+..|..|.+.+.++++..++|
T Consensus 10 ~~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~-------~-ad---~~~~~~~~d~~~l~~~~~~~~id 77 (395)
T PRK09288 10 PSATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAMQ-------V-AH---RSHVIDMLDGDALRAVIEREKPD 77 (395)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchHH-------h-hh---heEECCCCCHHHHHHHHHHhCCC
Confidence 46789999996 7999999999999999999998754321110 0 00 24567888999998888866779
Q ss_pred EEEEcc
Q 011841 196 HVLHLA 201 (476)
Q Consensus 196 ~Vi~~A 201 (476)
.|+-..
T Consensus 78 ~vi~~~ 83 (395)
T PRK09288 78 YIVPEI 83 (395)
T ss_pred EEEEee
Confidence 998654
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.058 Score=53.84 Aligned_cols=36 Identities=39% Similarity=0.442 Sum_probs=32.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
..+.+|||+||+|.+|..+++.+...|.+|+++++.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s 172 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS 172 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 456799999999999999999999999999988873
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.03 Score=58.68 Aligned_cols=79 Identities=22% Similarity=0.192 Sum_probs=55.2
Q ss_pred CCCCCEEEEECC----------------CChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEee
Q 011841 115 RPNGMTVLVTGA----------------AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178 (476)
Q Consensus 115 ~~~~~~VLVtGa----------------tG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~D 178 (476)
...+|+||||+| ||-.|.+|++++..+|++|+++.-... .....+++++..+
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~------------~~~p~~v~~i~V~ 320 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD------------LADPQGVKVIHVE 320 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC------------CCCCCCceEEEec
Confidence 368999999964 589999999999999999999973211 1123366666543
Q ss_pred cCCHHHHHHhh-ccCCccEEEEccccCChh
Q 011841 179 LNDAPLLTKLF-DVVPFTHVLHLAAQAGVR 207 (476)
Q Consensus 179 l~d~~~l~~~~-~~~~~d~Vi~~Ag~~~~~ 207 (476)
..+++.+.+ +..+.|++|++|+..++.
T Consensus 321 --ta~eM~~av~~~~~~Di~I~aAAVaDyr 348 (475)
T PRK13982 321 --SARQMLAAVEAALPADIAIFAAAVADWR 348 (475)
T ss_pred --CHHHHHHHHHhhCCCCEEEEecccccee
Confidence 444444433 333569999999986653
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.14 Score=49.39 Aligned_cols=93 Identities=19% Similarity=0.202 Sum_probs=70.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|+|||.||| .=|+.|++.|.++|+ |++.+- ........ ....+.++.+-+.|.+.+.++++..+++.
T Consensus 1 m~ILvlgGT-tE~r~la~~L~~~g~-v~~sv~---------t~~g~~~~~~~~~~~~v~~G~lg~~~~l~~~l~~~~i~~ 69 (249)
T PF02571_consen 1 MKILVLGGT-TEGRKLAERLAEAGY-VIVSVA---------TSYGGELLKPELPGLEVRVGRLGDEEGLAEFLRENGIDA 69 (249)
T ss_pred CEEEEEech-HHHHHHHHHHHhcCC-EEEEEE---------hhhhHhhhccccCCceEEECCCCCHHHHHHHHHhCCCcE
Confidence 799999986 469999999999998 665553 11222222 12467888899989999999999889999
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~ 237 (476)
||+..=+. -..-+.++.++|++.|++
T Consensus 70 vIDATHPf---------------A~~is~na~~a~~~~~ip 95 (249)
T PF02571_consen 70 VIDATHPF---------------AAEISQNAIEACRELGIP 95 (249)
T ss_pred EEECCCch---------------HHHHHHHHHHHHhhcCcc
Confidence 99976331 123367899999999985
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.16 Score=50.43 Aligned_cols=113 Identities=15% Similarity=0.093 Sum_probs=70.1
Q ss_pred EEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
|.|+|+ |.+|..++..|+.+|. +|++.+++.+.... .......... .....+.. . .| .+ .++++ |+|
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g-~~~dl~~~~~~~~~~~~I~~-t-~d---~~-~l~dA--DiV 70 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQG-KALDISQAAPILGSDTKVTG-T-ND---YE-DIAGS--DVV 70 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHH-HHHHHHHhhhhcCCCeEEEE-c-CC---HH-HhCCC--CEE
Confidence 468898 9999999999998876 99999997542211 1111111111 11122221 0 22 22 36777 999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|.+++.... ...+..+.+..|+.-...+++.+.+......+|.+|.
T Consensus 71 Iit~g~p~~--~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 71 VITAGIPRK--PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred EEecCCCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999986321 2233445667788888888888888776545666653
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.063 Score=58.09 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=53.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
-+|+|.|+ |-+|+++++.|.++|++|++++.+.+ +.+.....+..++.+|.+|++.++++--+ +.|.|+
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~---------~~~~~~~~g~~~i~GD~~~~~~L~~a~i~-~a~~vi 486 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRT---------RVDELRERGIRAVLGNAANEEIMQLAHLD-CARWLL 486 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHH---------HHHHHHHCCCeEEEcCCCCHHHHHhcCcc-ccCEEE
Confidence 47899996 99999999999999999999997332 11222234899999999999988864321 348776
Q ss_pred Ecc
Q 011841 199 HLA 201 (476)
Q Consensus 199 ~~A 201 (476)
-+.
T Consensus 487 v~~ 489 (558)
T PRK10669 487 LTI 489 (558)
T ss_pred EEc
Confidence 544
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.068 Score=54.27 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=29.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~ 152 (476)
+++|+|+||||++|+.+++.|.+..+ +++++.+..
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~ 38 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE 38 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh
Confidence 47999999999999999999998754 888885543
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.14 Score=50.80 Aligned_cols=164 Identities=14% Similarity=0.068 Sum_probs=97.4
Q ss_pred EECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccCCccEEEE
Q 011841 123 VTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLH 199 (476)
Q Consensus 123 VtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 199 (476)
|.|+ |.||..++..|+..|. +++++++..+.............. ....+.+.. .|. +.++++ |+||-
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~----~~~~da--DivVi 70 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS---GDY----SDCKDA--DLVVI 70 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec---CCH----HHHCCC--CEEEE
Confidence 4575 9999999999998874 799999865433222111111111 112343332 232 356667 99999
Q ss_pred ccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc---ccCCCCCCCCCCCCCCCCCCChHHH-HHH
Q 011841 200 LAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS---VYGLNTQVPFSESHRTDQPASLYAA-TKK 275 (476)
Q Consensus 200 ~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~---vyg~~~~~~~~E~~~~~~p~~~Y~~-sK~ 275 (476)
.||... ....+..+.++.|+.-.+.+.+.+.+.+....++.+|.-. .|-... .. ..++....|. +.+
T Consensus 71 tag~~r--k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~~-----~s--g~p~~~viG~gt~L 141 (299)
T TIGR01771 71 TAGAPQ--KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVAWK-----LS--GFPKNRVIGSGTVL 141 (299)
T ss_pred CCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH-----Hh--CCCHHHEEeccchH
Confidence 999732 2234567889999999999999999888766777777421 010000 00 0011112222 334
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
...++...+++..+++..-++. +|+|..+.
T Consensus 142 Ds~R~~~~la~~l~v~~~~V~~-~v~GeHG~ 171 (299)
T TIGR01771 142 DTARLRYLLAEKLGVDPQSVHA-YIIGEHGD 171 (299)
T ss_pred HHHHHHHHHHHHhCcCcCeEEE-EEEecCCC
Confidence 4455555566667888777774 58887543
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.11 Score=51.67 Aligned_cols=36 Identities=42% Similarity=0.476 Sum_probs=32.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
..+.+|||+||+|.+|..+++.+...|.+|+++++.
T Consensus 161 ~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~ 196 (332)
T cd08259 161 KKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS 196 (332)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC
Confidence 356799999999999999999999999999999873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.037 Score=52.23 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=32.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
|+|.|+||+|.+|..++..|.+.|++|++.+|+.+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~ 35 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLE 35 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 68999999999999999999999999999998654
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.21 Score=48.95 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH---HHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~~~~ 192 (476)
..+++|+|+|++|.+|..+++.+...|.+|+++++... ..+.. ...++.. ..|..+.+. +.+...+.
T Consensus 143 ~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~-----~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 212 (325)
T cd08253 143 KAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAE----GAELV-----RQAGADA-VFNYRAEDLADRILAATAGQ 212 (325)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHH-----HHcCCCE-EEeCCCcCHHHHHHHHcCCC
Confidence 35789999999999999999999999999999987432 11111 1112221 134444333 33333444
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|.|+++++.
T Consensus 213 ~~d~vi~~~~~ 223 (325)
T cd08253 213 GVDVIIEVLAN 223 (325)
T ss_pred ceEEEEECCch
Confidence 67999999874
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.094 Score=55.08 Aligned_cols=119 Identities=14% Similarity=0.102 Sum_probs=69.8
Q ss_pred EECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEEEcc-
Q 011841 123 VTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLA- 201 (476)
Q Consensus 123 VtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~A- 201 (476)
|+||+|.+|..+++.|...|++|+...+.... .. ..+..+++.+++-+
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~---------~~----------------------~~~~~~~~~~~~d~~ 91 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLT---------WA----------------------AGWGDRFGALVFDAT 91 (450)
T ss_pred EEccCchhHHHHHHHHhhCCCeeeecCccccc---------cc----------------------cCcCCcccEEEEECC
Confidence 78889999999999999999999987652210 00 00111223222221
Q ss_pred ccCChhhhhcChHHHHHHHHHHHHHHHHHH-HhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 011841 202 AQAGVRYAMQNPQSYVASNIAGFVNLLEVC-KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEI 280 (476)
Q Consensus 202 g~~~~~~~~~~~~~~~~~nv~gt~~ll~~a-~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~ 280 (476)
+.. .++. +.+....++.+ +......+||++++..... ....|+.+|.+.+.+
T Consensus 92 ~~~-------~~~~-----l~~~~~~~~~~l~~l~~~griv~i~s~~~~~---------------~~~~~~~akaal~gl 144 (450)
T PRK08261 92 GIT-------DPAD-----LKALYEFFHPVLRSLAPCGRVVVLGRPPEAA---------------ADPAAAAAQRALEGF 144 (450)
T ss_pred CCC-------CHHH-----HHHHHHHHHHHHHhccCCCEEEEEccccccC---------------CchHHHHHHHHHHHH
Confidence 111 1111 11111222222 2212223899999865431 123599999999999
Q ss_pred HHHHHHHh--CCcEEEEeeCc
Q 011841 281 AHTYNHIY--GLALTGLRFFT 299 (476)
Q Consensus 281 ~~~~~~~~--gi~~~ilRp~~ 299 (476)
++.+.+++ ++.+..|.++.
T Consensus 145 ~rsla~E~~~gi~v~~i~~~~ 165 (450)
T PRK08261 145 TRSLGKELRRGATAQLVYVAP 165 (450)
T ss_pred HHHHHHHhhcCCEEEEEecCC
Confidence 99988875 67888887754
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.11 Score=53.62 Aligned_cols=112 Identities=18% Similarity=0.072 Sum_probs=68.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHHhh----hcCCceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQKL----LQKHQVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~~~----~~~~~v~~~~ 176 (476)
....+|+|.|+ |.+|..+++.|+..|. +++++|.+.-.. -..+.....+. ...-+++.+.
T Consensus 36 L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~ 114 (390)
T PRK07411 36 LKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE 114 (390)
T ss_pred HhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence 45679999997 9999999999999996 466665432110 00111111111 1122455555
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
..++. +...+++.++ |+||.+... ...-..+-++|.+.++. +|+.+..+.||
T Consensus 115 ~~~~~-~~~~~~~~~~--D~Vvd~~d~-----------------~~~r~~ln~~~~~~~~p--~v~~~~~g~~g 166 (390)
T PRK07411 115 TRLSS-ENALDILAPY--DVVVDGTDN-----------------FPTRYLVNDACVLLNKP--NVYGSIFRFEG 166 (390)
T ss_pred cccCH-HhHHHHHhCC--CEEEECCCC-----------------HHHHHHHHHHHHHcCCC--EEEEEEccCEE
Confidence 55554 4566778877 999998743 22223455778888864 77776655554
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.14 Score=50.80 Aligned_cols=78 Identities=24% Similarity=0.176 Sum_probs=51.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHH---hhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTK---LFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~---~~~~~ 192 (476)
..+.+|+|+|+++.+|..+++.+...|++|+++++.... .... ...+.. ...|..+.+.... ...+.
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~----~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 234 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDK----LERA-----KELGAD-YVIDYRKEDFVREVRELTGKR 234 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHH----HHHH-----HHcCCC-eEEecCChHHHHHHHHHhCCC
Confidence 456799999999999999999999999999999874321 1111 111221 1235555444333 33334
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|++++++|.
T Consensus 235 ~~d~~i~~~g~ 245 (342)
T cd08266 235 GVDVVVEHVGA 245 (342)
T ss_pred CCcEEEECCcH
Confidence 67999999874
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.055 Score=53.34 Aligned_cols=71 Identities=14% Similarity=0.140 Sum_probs=49.7
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
...+++|+|+|+ |.+|+.+++.|...|.+|++.+|..+ +. .... ..+...+ +.+.+.+++++.
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~-------~~-~~~~-~~g~~~~-----~~~~l~~~l~~a-- 210 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSA-------DL-ARIT-EMGLIPF-----PLNKLEEKVAEI-- 210 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHH-------HH-HHHH-HCCCeee-----cHHHHHHHhccC--
Confidence 356889999997 88999999999999999999998432 11 1111 1122222 234566777766
Q ss_pred cEEEEccc
Q 011841 195 THVLHLAA 202 (476)
Q Consensus 195 d~Vi~~Ag 202 (476)
|+||++..
T Consensus 211 DiVint~P 218 (287)
T TIGR02853 211 DIVINTIP 218 (287)
T ss_pred CEEEECCC
Confidence 99999763
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.039 Score=54.16 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=33.1
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
..++++|+|.|++|.+|+.++..|+++|..|+++.|
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 468899999999999999999999999999998876
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.025 Score=52.43 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=29.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY 154 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~ 154 (476)
|++.| ||+|.||..++++|.+.||+|++..|+.+.
T Consensus 2 ~~~~i-~GtGniG~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 2 MIIAI-IGTGNIGSALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred cEEEE-eccChHHHHHHHHHHhCCCeEEEecCCChh
Confidence 45555 558999999999999999999999876653
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.17 Score=51.21 Aligned_cols=29 Identities=31% Similarity=0.402 Sum_probs=25.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG 144 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~ 144 (476)
...++|.|.||||++|..|++.|.+++|.
T Consensus 5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP 33 (344)
T PLN02383 5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFP 33 (344)
T ss_pred CCCCeEEEEcCCChHHHHHHHHHHhCCCC
Confidence 34579999999999999999999998873
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.047 Score=53.56 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~ 152 (476)
..+++|+|+|+ |.+|+.++..|.+.| .+|++++|..
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 56789999997 999999999999999 7999999954
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.1 Score=46.73 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=43.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+|+|.+.|- |-+|+.+++.|+++|++|++.+|..+ +.+.+...+++.. ++..++++.+ |+|
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~---------~~~~~~~~g~~~~-------~s~~e~~~~~--dvv 61 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPE---------KAEALAEAGAEVA-------DSPAEAAEQA--DVV 61 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHH---------HHHHHHHTTEEEE-------SSHHHHHHHB--SEE
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchh---------hhhhhHHhhhhhh-------hhhhhHhhcc--cce
Confidence 368999996 99999999999999999999998321 1111222233222 2455666766 999
Q ss_pred EEccc
Q 011841 198 LHLAA 202 (476)
Q Consensus 198 i~~Ag 202 (476)
|-+..
T Consensus 62 i~~v~ 66 (163)
T PF03446_consen 62 ILCVP 66 (163)
T ss_dssp EE-SS
T ss_pred Eeecc
Confidence 88763
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.1 Score=53.56 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=32.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
..++|.|.||.|.+|..+++.|.+.|+.|++.+|
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~ 130 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQ 130 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCC
Confidence 5589999999999999999999999999999997
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.061 Score=55.02 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=52.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
...+|+|+|+ |-+|..+++.|...|.+|++++|..+. ....... . + ..+..+..+.+.+.+.+..+ |+
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~----~~~l~~~-~---g-~~v~~~~~~~~~l~~~l~~a--Dv 233 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDR----LRQLDAE-F---G-GRIHTRYSNAYEIEDAVKRA--DL 233 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHH----HHHHHHh-c---C-ceeEeccCCHHHHHHHHccC--CE
Confidence 4567999987 999999999999999999999984321 1111111 1 1 12334556777888888877 99
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
||++++.
T Consensus 234 VI~a~~~ 240 (370)
T TIGR00518 234 LIGAVLI 240 (370)
T ss_pred EEEcccc
Confidence 9998754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.3 Score=46.49 Aligned_cols=110 Identities=19% Similarity=0.122 Sum_probs=65.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHHhh----hcCCceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQKL----LQKHQVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~~~----~~~~~v~~~~ 176 (476)
..+.+|+|.|. |.+|+++++.|+..|. +++++|...-.. -..+.....+. ...-.++.+.
T Consensus 9 L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 9 LRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 35578999996 9999999999999996 677776443110 00111111111 1122444454
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
..++ ++.+..++.. ++|+||.+... +..-..|.++|++.+++ ||...+++
T Consensus 88 ~~i~-~~~~~~l~~~-~~D~VvdaiD~-----------------~~~k~~L~~~c~~~~ip--~I~s~g~g 137 (231)
T cd00755 88 EFLT-PDNSEDLLGG-DPDFVVDAIDS-----------------IRAKVALIAYCRKRKIP--VISSMGAG 137 (231)
T ss_pred eecC-HhHHHHHhcC-CCCEEEEcCCC-----------------HHHHHHHHHHHHHhCCC--EEEEeCCc
Confidence 4444 4555666642 46999998642 23335677889998864 66554433
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.083 Score=49.17 Aligned_cols=36 Identities=31% Similarity=0.304 Sum_probs=32.5
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
...+|+|+|+|. |.+|+++++.|.+.|++|++.+++
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 367899999997 799999999999999999998874
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.13 Score=56.47 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=55.3
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~ 196 (476)
.++|+|.|. |-+|+.+++.|.++|+++++++.+.+ +.+.....+..++.+|.+|++.++++ ++. .|.
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~---------~v~~~~~~g~~v~~GDat~~~~L~~agi~~--A~~ 467 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPD---------HIETLRKFGMKVFYGDATRMDLLESAGAAK--AEV 467 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHH---------HHHHHHhcCCeEEEEeCCCHHHHHhcCCCc--CCE
Confidence 468999996 99999999999999999999997332 12222334788999999999988764 333 488
Q ss_pred EEEcc
Q 011841 197 VLHLA 201 (476)
Q Consensus 197 Vi~~A 201 (476)
||-+.
T Consensus 468 vvv~~ 472 (621)
T PRK03562 468 LINAI 472 (621)
T ss_pred EEEEe
Confidence 87665
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.034 Score=54.84 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=32.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY 155 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~ 155 (476)
++|.|.|+ |.+|..++..|++.|++|++.+++.+..
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~~~ 37 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQEQL 37 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHHHH
Confidence 47999997 9999999999999999999999966543
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.081 Score=52.39 Aligned_cols=70 Identities=17% Similarity=0.131 Sum_probs=49.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+++|+|+|. |.+|..++..|...|.+|++.+|..+ . .......+...+ +.+.+.+.+.++ |
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~-------~--~~~~~~~G~~~~-----~~~~l~~~l~~a--D 212 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSA-------H--LARITEMGLSPF-----HLSELAEEVGKI--D 212 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHH-------H--HHHHHHcCCeee-----cHHHHHHHhCCC--C
Confidence 46789999996 88999999999999999999998432 1 111112233332 234566677766 9
Q ss_pred EEEEccc
Q 011841 196 HVLHLAA 202 (476)
Q Consensus 196 ~Vi~~Ag 202 (476)
+||+++.
T Consensus 213 iVI~t~p 219 (296)
T PRK08306 213 IIFNTIP 219 (296)
T ss_pred EEEECCC
Confidence 9999763
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.93 Score=47.65 Aligned_cols=90 Identities=19% Similarity=0.174 Sum_probs=59.0
Q ss_pred CCCCEEEEECCC---ChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc
Q 011841 116 PNGMTVLVTGAA---GFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 116 ~~~~~VLVtGat---G~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
.+.++|.|.|++ |-+|..+.+.|.+.|+ +|+.+..... +-.++.+ ..+++++-+
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~--------------~i~G~~~-------~~sl~~lp~ 63 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG--------------EILGVKA-------YPSVLEIPD 63 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC--------------ccCCccc-------cCCHHHCCC
Confidence 456789999998 6799999999999998 6776654211 0012222 123444433
Q ss_pred cCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
.+|.+|-+... ..+..+++.|.+.|++ .+|.+|+..
T Consensus 64 --~~Dlavi~vp~------------------~~~~~~l~e~~~~gv~-~~vi~s~gf 99 (447)
T TIGR02717 64 --PVDLAVIVVPA------------------KYVPQVVEECGEKGVK-GAVVITAGF 99 (447)
T ss_pred --CCCEEEEecCH------------------HHHHHHHHHHHhcCCC-EEEEECCCc
Confidence 45888766532 2345788888889986 888777643
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.19 Score=49.92 Aligned_cols=77 Identities=23% Similarity=0.214 Sum_probs=49.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~ 192 (476)
..+.+|||+||+|.+|..+++.+...|.+|+++++..+ +.+.....++..+ .|..+.+ .+.++.. .
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~---------~~~~l~~~Ga~~v-i~~~~~~~~~~v~~~~~-~ 210 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDD---------KVAWLKELGFDAV-FNYKTVSLEEALKEAAP-D 210 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHH---------HHHHHHHcCCCEE-EeCCCccHHHHHHHHCC-C
Confidence 45689999999999999999999999999998886332 1122112233222 2333322 2333322 3
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+|+++.|.
T Consensus 211 gvd~vld~~g~ 221 (329)
T cd08294 211 GIDCYFDNVGG 221 (329)
T ss_pred CcEEEEECCCH
Confidence 57999998874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.22 Score=49.98 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=49.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC--HHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~~~~ 192 (476)
..+.+|||+|+ |.+|..+++.+...|.+ |+++++..+ +.+....-++..+ .|..+ .+.+.++..+.
T Consensus 162 ~~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~---------~~~~~~~~ga~~~-i~~~~~~~~~~~~~~~~~ 230 (339)
T cd08239 162 SGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPE---------RLELAKALGADFV-INSGQDDVQEIRELTSGA 230 (339)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH---------HHHHHHHhCCCEE-EcCCcchHHHHHHHhCCC
Confidence 34789999986 99999999999999998 988876332 1111111132221 23333 33455555544
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||++.|.
T Consensus 231 ~~d~vid~~g~ 241 (339)
T cd08239 231 GADVAIECSGN 241 (339)
T ss_pred CCCEEEECCCC
Confidence 67999999875
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.085 Score=51.48 Aligned_cols=36 Identities=25% Similarity=0.216 Sum_probs=32.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
..+++|+|+|+ |.+|+.++..|++.|++|++++|..
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 45689999998 8999999999999999999999854
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.12 Score=51.50 Aligned_cols=34 Identities=24% Similarity=0.166 Sum_probs=31.0
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
++|+|.|.|+ |-+|..+++.|.+.|++|++.+|.
T Consensus 3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGA-GAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4689999985 999999999999999999999984
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.2 Score=49.73 Aligned_cols=76 Identities=24% Similarity=0.178 Sum_probs=48.4
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC--HHHHHHhhccCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVVPF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~~~~~~ 194 (476)
.+.+|||.|++|.+|..+++.+...|.+|+++++..+ +.+.....++..+ .|..+ .+.+.++ .+..+
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~---------~~~~~~~~g~~~v-~~~~~~~~~~~~~~-~~~~~ 214 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKAD---------AADYLKKLGAKEV-IPREELQEESIKPL-EKQRW 214 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHH---------HHHHHHHcCCCEE-EcchhHHHHHHHhh-ccCCc
Confidence 3579999999999999999999999999999887432 1111111233211 22222 2233333 23357
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+|+++.|.
T Consensus 215 d~vld~~g~ 223 (326)
T cd08289 215 AGAVDPVGG 223 (326)
T ss_pred CEEEECCcH
Confidence 999998863
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.22 Score=56.41 Aligned_cols=113 Identities=11% Similarity=-0.007 Sum_probs=69.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCC--------------CCchHHHHHHh----hhcCCceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY--------------YDPSLKRARQK----LLQKHQVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~--------------~~~~~~~~~~~----~~~~~~v~~~~ 176 (476)
....+|+|.|+ |++|..+++.|+..|. +++++|-+.=. .-..+.....+ ....-+|+++.
T Consensus 330 L~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~ 408 (989)
T PRK14852 330 LLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP 408 (989)
T ss_pred HhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence 45679999996 9999999999999986 45555532211 00111111111 11222455555
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcccc
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVY 249 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vy 249 (476)
..+ +.+.+.++++++ |+||.+.-... +..-..+.+.|.+.+++ +|+.++.+.+
T Consensus 409 ~~I-~~en~~~fl~~~--DiVVDa~D~~~---------------~~~rr~l~~~c~~~~IP--~I~ag~~G~~ 461 (989)
T PRK14852 409 EGV-AAETIDAFLKDV--DLLVDGIDFFA---------------LDIRRRLFNRALELGIP--VITAGPLGYS 461 (989)
T ss_pred cCC-CHHHHHHHhhCC--CEEEECCCCcc---------------HHHHHHHHHHHHHcCCC--EEEeeccccC
Confidence 555 456788899887 99998763311 12234667778888875 7777664433
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.081 Score=52.12 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=31.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY 155 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~ 155 (476)
++|.|.|+ |.+|..++..|+..|++|++.+++.+..
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~~~l 39 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISDEAL 39 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHHHH
Confidence 58999996 9999999999999999999999866543
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.82 Score=45.06 Aligned_cols=166 Identities=12% Similarity=0.053 Sum_probs=90.0
Q ss_pred CEEEEECC-CChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHH----Hh---hc
Q 011841 119 MTVLVTGA-AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLT----KL---FD 190 (476)
Q Consensus 119 ~~VLVtGa-tG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~----~~---~~ 190 (476)
..|+|.|. +-=|++.++..|-++|+-|++++.+.+.. +.. +......+.....|..|+.++. ++ ++
T Consensus 4 evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~-----~~v-e~e~~~dI~~L~ld~~~~~~~~~~l~~f~~~L~ 77 (299)
T PF08643_consen 4 EVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDE-----KYV-ESEDRPDIRPLWLDDSDPSSIHASLSRFASLLS 77 (299)
T ss_pred eEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHH-----HHH-HhccCCCCCCcccCCCCCcchHHHHHHHHHHhc
Confidence 47888895 78899999999999999999999744311 111 1112445777777775554333 22 22
Q ss_pred cC------CccEEEEcccc------CCh-----hhhhcChHHHHHHHHHHHHHHHH----HHHhcC-CCCeEEEecCccc
Q 011841 191 VV------PFTHVLHLAAQ------AGV-----RYAMQNPQSYVASNIAGFVNLLE----VCKSVN-PQPSIVWASSSSV 248 (476)
Q Consensus 191 ~~------~~d~Vi~~Ag~------~~~-----~~~~~~~~~~~~~nv~gt~~ll~----~a~~~~-~~~~~V~~SS~~v 248 (476)
.- ...+..++.|. ..+ ..+.+.....++.|+.-...+++ ..+... .++++|.+.-+-.
T Consensus 78 ~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~Psi~ 157 (299)
T PF08643_consen 78 RPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFNPSIS 157 (299)
T ss_pred CCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeCchh
Confidence 11 01233344433 110 11223344556666655444443 344411 2236665553222
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCccc
Q 011841 249 YGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVY 301 (476)
Q Consensus 249 yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~ 301 (476)
+..+. +..++-.....+.+.+...+.++. +++++.++.|++-
T Consensus 158 ssl~~-----------PfhspE~~~~~al~~~~~~LrrEl~~~~I~V~~i~LG~l~ 202 (299)
T PF08643_consen 158 SSLNP-----------PFHSPESIVSSALSSFFTSLRRELRPHNIDVTQIKLGNLD 202 (299)
T ss_pred hccCC-----------CccCHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEeeeec
Confidence 21110 222344445556666666665554 5999999999973
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.21 Score=48.87 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=46.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-HHHHHHhhccCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~~~ 194 (476)
.+.+|||.|+ |.||...++.+...|.+ |+++++..+ +.+....-++..+ .|..+ .+.+.++..+..+
T Consensus 120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~---------r~~~a~~~Ga~~~-i~~~~~~~~~~~~~~~~g~ 188 (280)
T TIGR03366 120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPD---------RRELALSFGATAL-AEPEVLAERQGGLQNGRGV 188 (280)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH---------HHHHHHHcCCcEe-cCchhhHHHHHHHhCCCCC
Confidence 5679999987 89999999999999987 777765321 1111111122211 12222 2334444444457
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||++.|.
T Consensus 189 d~vid~~G~ 197 (280)
T TIGR03366 189 DVALEFSGA 197 (280)
T ss_pred CEEEECCCC
Confidence 999999874
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.35 Score=46.17 Aligned_cols=35 Identities=40% Similarity=0.431 Sum_probs=31.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
..+.+|||+|+++ +|..+++.+...|.+|+++++.
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~ 167 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS 167 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC
Confidence 3567999999988 9999999999999999999874
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.17 Score=46.45 Aligned_cols=33 Identities=36% Similarity=0.609 Sum_probs=26.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
|+|.|.| .|++|--++..|++.|++|++++.+.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 7899998 59999999999999999999999854
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.15 Score=51.52 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=30.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
|+|.|.| +||+|-..+-.|++.||+|++++...+
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 7899999 699999999999999999999998553
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.13 Score=47.95 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
.++++|||.|| |-+|...++.|++.|++|+++.+
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcC
Confidence 57789999998 99999999999999999999975
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.19 Score=53.23 Aligned_cols=75 Identities=23% Similarity=0.182 Sum_probs=51.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+++|+|+|+ |.+|..+++.|.++|++|+++++.... ........++..++.++.++-.. ... .+|
T Consensus 14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~----~~~~~~~~l~~~gv~~~~~~~~~------~~~--~~D 80 (480)
T PRK01438 14 WQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDE----RHRALAAILEALGATVRLGPGPT------LPE--DTD 80 (480)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchh----hhHHHHHHHHHcCCEEEECCCcc------ccC--CCC
Confidence 35679999997 999999999999999999999865421 11122233344577777654322 122 459
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
.||...|.
T Consensus 81 ~Vv~s~Gi 88 (480)
T PRK01438 81 LVVTSPGW 88 (480)
T ss_pred EEEECCCc
Confidence 99988886
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.21 Score=50.18 Aligned_cols=34 Identities=32% Similarity=0.361 Sum_probs=30.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNF 151 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~ 151 (476)
+.+|||+||+|.+|..+++.+...|. +|+++++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s 189 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGS 189 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 37999999999999999999999998 79998863
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.078 Score=48.31 Aligned_cols=71 Identities=24% Similarity=0.173 Sum_probs=47.0
Q ss_pred CCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.....+++|.|.|. |-||+.+++.|..-|.+|++.+|... ... .....++. ..+++++++.+
T Consensus 31 ~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~-------~~~--~~~~~~~~--------~~~l~ell~~a 92 (178)
T PF02826_consen 31 GRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPK-------PEE--GADEFGVE--------YVSLDELLAQA 92 (178)
T ss_dssp BS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCH-------HHH--HHHHTTEE--------ESSHHHHHHH-
T ss_pred ccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCC-------hhh--hcccccce--------eeehhhhcchh
Confidence 33468899999995 99999999999999999999998442 111 00011221 22466777777
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
|+|+.+...
T Consensus 93 --Div~~~~pl 101 (178)
T PF02826_consen 93 --DIVSLHLPL 101 (178)
T ss_dssp --SEEEE-SSS
T ss_pred --hhhhhhhcc
Confidence 888887754
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.29 Score=53.88 Aligned_cols=109 Identities=14% Similarity=0.060 Sum_probs=66.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCC-------C-------CchHHHHHHh----hhcCCceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY-------Y-------DPSLKRARQK----LLQKHQVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~-------~-------~~~~~~~~~~----~~~~~~v~~~~ 176 (476)
..+.+|+|.|+ |.+|+++++.|+..|. +++++|-+.=. . -..+.....+ ....-+|+.+.
T Consensus 41 L~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~ 119 (679)
T PRK14851 41 LAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP 119 (679)
T ss_pred HhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 45679999996 9999999999999995 45555422210 0 0011111111 12233566777
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
..++ .+.+.++++++ |+||++.-... +..-..+.+.|.+.++. +|+.+.
T Consensus 120 ~~i~-~~n~~~~l~~~--DvVid~~D~~~---------------~~~r~~l~~~c~~~~iP--~i~~g~ 168 (679)
T PRK14851 120 AGIN-ADNMDAFLDGV--DVVLDGLDFFQ---------------FEIRRTLFNMAREKGIP--VITAGP 168 (679)
T ss_pred cCCC-hHHHHHHHhCC--CEEEECCCCCc---------------HHHHHHHHHHHHHCCCC--EEEeec
Confidence 7775 46678889877 99998763210 11223566789888875 666553
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.14 Score=45.66 Aligned_cols=72 Identities=21% Similarity=0.156 Sum_probs=45.3
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.+..+|+++|+| -|.+|+.+++.|...|.+|++..++. -+..+... .+.++.. +++++...
T Consensus 19 ~~l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V~e~DP-------i~alqA~~--dGf~v~~--------~~~a~~~a- 79 (162)
T PF00670_consen 19 LMLAGKRVVVIG-YGKVGKGIARALRGLGARVTVTEIDP-------IRALQAAM--DGFEVMT--------LEEALRDA- 79 (162)
T ss_dssp S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSH-------HHHHHHHH--TT-EEE---------HHHHTTT--
T ss_pred eeeCCCEEEEeC-CCcccHHHHHHHhhCCCEEEEEECCh-------HHHHHhhh--cCcEecC--------HHHHHhhC-
Confidence 346889999999 59999999999999999999998722 22222222 2554442 55667766
Q ss_pred ccEEEEccccCC
Q 011841 194 FTHVLHLAAQAG 205 (476)
Q Consensus 194 ~d~Vi~~Ag~~~ 205 (476)
|++|.+.|..+
T Consensus 80 -di~vtaTG~~~ 90 (162)
T PF00670_consen 80 -DIFVTATGNKD 90 (162)
T ss_dssp -SEEEE-SSSSS
T ss_pred -CEEEECCCCcc
Confidence 99999888633
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.70 E-value=2.7 Score=41.39 Aligned_cols=93 Identities=11% Similarity=0.036 Sum_probs=59.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
...+|+|-|-||.+|+.+.+.|+..|.+++.-+......++ -.++.+ ..++.++-+...+|.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~-----------v~G~~~-------y~sv~dlp~~~~~Dl 66 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTT-----------VLGLPV-------FDSVKEAVEETGANA 66 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcce-----------ecCeec-------cCCHHHHhhccCCCE
Confidence 34589999999999999999999999886655542210110 002221 234555554423588
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCc
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS 246 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~ 246 (476)
+|-+... ..+..+++.|.+.|++ .+|.+|+.
T Consensus 67 avi~vpa------------------~~v~~~l~e~~~~Gvk-~avIis~G 97 (286)
T TIGR01019 67 SVIFVPA------------------PFAADAIFEAIDAGIE-LIVCITEG 97 (286)
T ss_pred EEEecCH------------------HHHHHHHHHHHHCCCC-EEEEECCC
Confidence 8877643 1244677788889987 77766654
|
ATP citrate lyases appear to form an outgroup. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.051 Score=53.46 Aligned_cols=36 Identities=25% Similarity=0.128 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~ 152 (476)
..+++|+|.|+ |..|+.++..|.+.|. +|++++|..
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 45689999997 8899999999999997 799999954
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.33 Score=48.91 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=46.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
.+.+|+|+|+ |.+|...++.+...|. +|+++++..+ +.+....-+...+ .|..+. .+.++.+.. .+
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~---------~~~~a~~lGa~~v-i~~~~~-~~~~~~~~~g~~ 236 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPR---------SLSLAREMGADKL-VNPQND-DLDHYKAEKGYF 236 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHH---------HHHHHHHcCCcEE-ecCCcc-cHHHHhccCCCC
Confidence 4679999996 9999999999999998 5888887432 1111111233222 233332 233333221 47
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||++.|.
T Consensus 237 D~vid~~G~ 245 (343)
T PRK09880 237 DVSFEVSGH 245 (343)
T ss_pred CEEEECCCC
Confidence 999999984
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.17 Score=42.61 Aligned_cols=85 Identities=14% Similarity=0.194 Sum_probs=49.6
Q ss_pred CEEEEECCC---ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAA---GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGat---G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+|.|.|++ +-.|..+.+.|.+.|++|+.+.-... +-.+...+ .++.+. -.++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~--------------~i~G~~~y-------~sl~e~--p~~iD 57 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGG--------------EILGIKCY-------PSLAEI--PEPID 57 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCS--------------EETTEE-B-------SSGGGC--SST-S
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCce--------------EECcEEee-------ccccCC--CCCCC
Confidence 579999988 67899999999999999998864111 00122211 122221 23568
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
.++-+... ..+..+++.|.+.|++ .+++.++
T Consensus 58 lavv~~~~------------------~~~~~~v~~~~~~g~~-~v~~~~g 88 (116)
T PF13380_consen 58 LAVVCVPP------------------DKVPEIVDEAAALGVK-AVWLQPG 88 (116)
T ss_dssp EEEE-S-H------------------HHHHHHHHHHHHHT-S-EEEE-TT
T ss_pred EEEEEcCH------------------HHHHHHHHHHHHcCCC-EEEEEcc
Confidence 88877632 3355788888888986 7777765
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.26 Score=49.94 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=31.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
..+.+|||+||+|.+|..+++.+...|.+|+++++
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~ 191 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG 191 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC
Confidence 45789999999999999999999999999998876
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.2 Score=49.46 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=31.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNS 153 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~ 153 (476)
..+++|+|.|+ |+.+++++-.|+..|. +|++++|..+
T Consensus 122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~ 159 (288)
T PRK12749 122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDE 159 (288)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence 46789999997 7779999999999986 8999999643
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.26 Score=51.02 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=47.6
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
...+++|+|.|+ |.||..+++.+...|.+|++++++..+. ......++..+ + . ++++.++
T Consensus 199 ~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~---------~~A~~~G~~~~--~---~---~e~v~~a-- 258 (413)
T cd00401 199 MIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICA---------LQAAMEGYEVM--T---M---EEAVKEG-- 258 (413)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhH---------HHHHhcCCEEc--c---H---HHHHcCC--
Confidence 357899999996 9999999999999999999988743211 11111244332 1 1 2445555
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||.+.|.
T Consensus 259 DVVI~atG~ 267 (413)
T cd00401 259 DIFVTTTGN 267 (413)
T ss_pred CEEEECCCC
Confidence 999998874
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.38 Score=48.48 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=48.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhcCCceE-EEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~-~~~~Dl~d~~~l~~~~~~~~ 193 (476)
..+.+|+|+|+ |.+|..+++.+...|.+ |+++++..+ +......-++. ++..+-.+.+.+.++..+.+
T Consensus 159 ~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~v~~~~~~~~---------~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~ 228 (347)
T PRK10309 159 CEGKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDINSE---------KLALAKSLGAMQTFNSREMSAPQIQSVLRELR 228 (347)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHH---------HHHHHHHcCCceEecCcccCHHHHHHHhcCCC
Confidence 35679999985 99999999999999997 677766322 11111111322 22222122345566665556
Q ss_pred cc-EEEEcccc
Q 011841 194 FT-HVLHLAAQ 203 (476)
Q Consensus 194 ~d-~Vi~~Ag~ 203 (476)
+| +||.++|.
T Consensus 229 ~d~~v~d~~G~ 239 (347)
T PRK10309 229 FDQLILETAGV 239 (347)
T ss_pred CCeEEEECCCC
Confidence 78 89999885
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.12 Score=53.01 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=51.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+++|+|.|+ |.+|+.+++++.+.|++|++++....... .... -+.+.+|..|.+.+.++.+.+ |+|
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa--------~~~a---d~~~~~~~~D~~~l~~~a~~~--dvi 67 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPA--------AQVA---DEVIVADYDDVAALRELAEQC--DVI 67 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCch--------hHhC---ceEEecCCCCHHHHHHHHhcC--CEE
Confidence 468999998 89999999999999999999987543211 0011 134557899999999999876 877
Q ss_pred EE
Q 011841 198 LH 199 (476)
Q Consensus 198 i~ 199 (476)
..
T Consensus 68 t~ 69 (372)
T PRK06019 68 TY 69 (372)
T ss_pred Ee
Confidence 53
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.12 Score=50.60 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=48.1
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..++++|+|+|+++.+|+-++..|..+|..|+++.+.. ..+.+.++.+
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------------------------~~l~~~~~~A-- 202 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------------------------KDMASYLKDA-- 202 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHHhhC--
Confidence 36889999999999999999999999999999998621 2355667767
Q ss_pred cEEEEccccC
Q 011841 195 THVLHLAAQA 204 (476)
Q Consensus 195 d~Vi~~Ag~~ 204 (476)
|+||...|..
T Consensus 203 DIVIsAvg~p 212 (286)
T PRK14175 203 DVIVSAVGKP 212 (286)
T ss_pred CEEEECCCCC
Confidence 9999999873
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.16 Score=49.89 Aligned_cols=109 Identities=21% Similarity=0.223 Sum_probs=65.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHHhhhc--CC--ceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQKLLQ--KH--QVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~~~~~--~~--~v~~~~ 176 (476)
....+|||.|+ |.+|.++++.|+..|. +|++.|...-.. ...+.....+.+. .+ .++.+.
T Consensus 17 L~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~ 95 (286)
T cd01491 17 LQKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVST 95 (286)
T ss_pred HhcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 45568999997 9999999999999996 577777543110 0011111111111 22 344444
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~ 251 (476)
.++ + .+.+... |+||.+... ......+-++|++.++ .||...+.+.+|.
T Consensus 96 ~~~-~----~~~l~~f--dvVV~~~~~-----------------~~~~~~in~~c~~~~i--pfI~a~~~G~~G~ 144 (286)
T cd01491 96 GPL-T----TDELLKF--QVVVLTDAS-----------------LEDQLKINEFCHSPGI--KFISADTRGLFGS 144 (286)
T ss_pred ccC-C----HHHHhcC--CEEEEecCC-----------------HHHHHHHHHHHHHcCC--EEEEEeccccEEE
Confidence 332 2 2345544 999887532 2223456688998886 5998888777764
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.43 Score=48.54 Aligned_cols=105 Identities=10% Similarity=0.017 Sum_probs=65.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCC-------C---C-----CCc--hHHHHHHhhhc--CCceEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN-------S---Y-----YDP--SLKRARQKLLQ--KHQVFIV 175 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~-------~---~-----~~~--~~~~~~~~~~~--~~~v~~~ 175 (476)
..+.+|+|.|+ |++|+++++.|++.|. +++++|-+. + . ..+ .+.......+. ..++..+
T Consensus 174 L~~~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~ 252 (393)
T PRK06153 174 LEGQRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPH 252 (393)
T ss_pred HhhCcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEE
Confidence 45679999997 9999999999999986 677766431 0 0 001 11111111111 2356666
Q ss_pred EeecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 176 ~~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
...+ +++.+. .+.++ |+||.|.-. ..+-..|.++|.+.++. +|.++
T Consensus 253 ~~~I-~~~n~~-~L~~~--DiV~dcvDn-----------------~~aR~~ln~~a~~~gIP--~Id~G 298 (393)
T PRK06153 253 PEYI-DEDNVD-ELDGF--TFVFVCVDK-----------------GSSRKLIVDYLEALGIP--FIDVG 298 (393)
T ss_pred eecC-CHHHHH-HhcCC--CEEEEcCCC-----------------HHHHHHHHHHHHHcCCC--EEEee
Confidence 6666 555554 45666 999998742 33334566788888875 66554
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.45 Score=48.21 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=48.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH---HHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---PLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~~ 191 (476)
..+.+|||.|+ |.||..+++.+...|.+ |+++++..+ +.+.....+... ..|..+. +.+.++..+
T Consensus 175 ~~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~---------~~~~~~~~Ga~~-~i~~~~~~~~~~i~~~~~~ 243 (358)
T TIGR03451 175 KRGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDR---------KLEWAREFGATH-TVNSSGTDPVEAIRALTGG 243 (358)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH---------HHHHHHHcCCce-EEcCCCcCHHHHHHHHhCC
Confidence 35679999985 99999999999999985 888876332 111111123321 1233332 334444444
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
.++|+||++.|.
T Consensus 244 ~g~d~vid~~g~ 255 (358)
T TIGR03451 244 FGADVVIDAVGR 255 (358)
T ss_pred CCCCEEEECCCC
Confidence 467999999874
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.49 Score=46.99 Aligned_cols=36 Identities=39% Similarity=0.358 Sum_probs=32.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
..+.+|+|.|++|.+|..+++.+...|.+|+++++.
T Consensus 138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~ 173 (329)
T cd08250 138 KSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSS 173 (329)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCc
Confidence 456799999999999999999999999999998873
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.1 Score=51.77 Aligned_cols=26 Identities=35% Similarity=0.337 Sum_probs=23.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD 143 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~ 143 (476)
+++|.|.||||.+|+.+++.|.++..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f 26 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF 26 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC
Confidence 36899999999999999999999754
|
|
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.43 Score=47.18 Aligned_cols=78 Identities=15% Similarity=0.116 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH---HHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---PLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~~~ 192 (476)
..+.+|||.|++|.+|..+++.+...|.+|+++++..+. ...... .++..+ .+..+. +.+.++..+.
T Consensus 138 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~-----~~~~~~----~g~~~~-~~~~~~~~~~~i~~~~~~~ 207 (324)
T cd08292 138 KPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAG-----VAELRA----LGIGPV-VSTEQPGWQDKVREAAGGA 207 (324)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHH-----HHHHHh----cCCCEE-EcCCCchHHHHHHHHhCCC
Confidence 456799999999999999999999999999998763321 111111 133221 122222 3345555555
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+|+++.|.
T Consensus 208 ~~d~v~d~~g~ 218 (324)
T cd08292 208 PISVALDSVGG 218 (324)
T ss_pred CCcEEEECCCC
Confidence 67999999874
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.19 Score=49.41 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=66.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.++.|.|+|+.| ||.-=++.-.+-|++|+++++.+.. +.+....-+.+.+-.-..|++.++++.+.. |.
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~k--------keea~~~LGAd~fv~~~~d~d~~~~~~~~~--dg 249 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKK--------KEEAIKSLGADVFVDSTEDPDIMKAIMKTT--DG 249 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchh--------HHHHHHhcCcceeEEecCCHHHHHHHHHhh--cC
Confidence 678999999977 9998888888889999999996532 122222234444433333788888888766 66
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
++|.+...+. . ....++.+++..| ++|+++-..
T Consensus 250 ~~~~v~~~a~----~-----------~~~~~~~~lk~~G---t~V~vg~p~ 282 (360)
T KOG0023|consen 250 GIDTVSNLAE----H-----------ALEPLLGLLKVNG---TLVLVGLPE 282 (360)
T ss_pred cceeeeeccc----c-----------chHHHHHHhhcCC---EEEEEeCcC
Confidence 6665532100 0 1235666677665 688887433
|
|
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.12 Score=51.87 Aligned_cols=75 Identities=21% Similarity=0.217 Sum_probs=59.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH-HHHHhhccCCcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP-LLTKLFDVVPFT 195 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~-~l~~~~~~~~~d 195 (476)
+++|||.|+ ||+.+-+++.|.+++ .+|++.+|. .+..++......++.+..|++|++ .+++..+.. |
T Consensus 2 ~~~vlllgs-g~v~~p~~d~ls~~~dv~vtva~~~--------~~~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~--D 70 (445)
T KOG0172|consen 2 KKGVLLLGS-GFVSRPVADFLSRKKDVNVTVASRT--------LKDAEALVKGINIKAVSLDVADEELALRKEVKPL--D 70 (445)
T ss_pred CcceEEecC-ccccchHHHHHhhcCCceEEEehhh--------HHHHHHHhcCCCccceEEEccchHHHHHhhhccc--c
Confidence 468999995 999999999999986 478888772 222334445567999999999998 899988877 9
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
.|+-+.-.
T Consensus 71 ~viSLlP~ 78 (445)
T KOG0172|consen 71 LVISLLPY 78 (445)
T ss_pred eeeeeccc
Confidence 99988643
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.33 Score=49.13 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=27.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC-CeEEEEeC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDN 150 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R 150 (476)
++|.|+||+|++|++|++.|.+++ .+|..+..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~ 33 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVA 33 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEE
Confidence 579999999999999999998876 58887744
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.15 Score=50.76 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=31.8
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY 154 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~ 154 (476)
-++|.|.|+ |.+|..++..|++.|++|++.+++.+.
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~~V~~~d~~~~~ 39 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGLQVVLIDVMEGA 39 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH
Confidence 368999996 999999999999999999999986543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.36 Score=48.36 Aligned_cols=74 Identities=20% Similarity=0.199 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+.+|+|+|+ |.+|..-++.+...|++|++++|+.+. .+...++ +...+. |-+|++.++++.+. +|
T Consensus 165 ~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K-----~e~a~~l----GAd~~i-~~~~~~~~~~~~~~--~d 231 (339)
T COG1064 165 KPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEK-----LELAKKL----GADHVI-NSSDSDALEAVKEI--AD 231 (339)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHH-----HHHHHHh----CCcEEE-EcCCchhhHHhHhh--Cc
Confidence 35689999998 599999999999999999999995541 1111111 222222 22256656655554 59
Q ss_pred EEEEccc
Q 011841 196 HVLHLAA 202 (476)
Q Consensus 196 ~Vi~~Ag 202 (476)
++|++++
T Consensus 232 ~ii~tv~ 238 (339)
T COG1064 232 AIIDTVG 238 (339)
T ss_pred EEEECCC
Confidence 9999997
|
|
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.54 Score=45.93 Aligned_cols=105 Identities=26% Similarity=0.191 Sum_probs=59.6
Q ss_pred CCCCCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhc---CCc-----------eEEEEe
Q 011841 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQ---KHQ-----------VFIVEG 177 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~---~~~-----------v~~~~~ 177 (476)
++...+.-|.|.|+ |.+|++++..|++.|.+ +.+++=.+-.++ ++.+..-.-+. .++ .-..+.
T Consensus 69 m~kl~~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDfdqVSls-SLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eI 146 (430)
T KOG2018|consen 69 MEKLTNSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDFDQVSLS-SLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEI 146 (430)
T ss_pred HHHhcCcEEEEEec-CchhHHHHHHHHHhcCceEEEechhhccHh-hhhhhhhhhHhhcCCchHHHHHHHHHhhCcccee
Confidence 33345567888887 99999999999999974 555543221111 11110000000 000 011112
Q ss_pred e----cCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 011841 178 D----LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (476)
Q Consensus 178 D----l~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~ 237 (476)
| +.+.+.-++++.+ +||.|++|.- |++.-..|+++|-.++.+
T Consensus 147 dar~~l~~~~s~edll~g-nPdFvvDciD-----------------NidtKVdLL~y~~~~~l~ 192 (430)
T KOG2018|consen 147 DARNMLWTSSSEEDLLSG-NPDFVVDCID-----------------NIDTKVDLLEYCYNHGLK 192 (430)
T ss_pred cHHHhhcCCCchhhhhcC-CCCeEeEhhh-----------------hhhhhhHHHHHHHHcCCc
Confidence 2 1233333444444 4899998863 777778999999999975
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.065 Score=52.82 Aligned_cols=38 Identities=24% Similarity=0.262 Sum_probs=33.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP 157 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~ 157 (476)
++|.|.|+ |.+|..++..|+..|++|++.++..+..+.
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~~~~ 43 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEELATA 43 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 48999997 999999999999999999999997765544
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.44 Score=49.10 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=52.3
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~ 196 (476)
...|+|+|. |-+|+.++++|.++|.+|++++.+. . +.....+..++.+|.+|++.++++ ++.+ +.
T Consensus 240 k~HvII~G~-g~lg~~v~~~L~~~g~~vvVId~d~---------~--~~~~~~g~~vI~GD~td~e~L~~AgI~~A--~a 305 (393)
T PRK10537 240 KDHFIICGH-SPLAINTYLGLRQRGQAVTVIVPLG---------L--EHRLPDDADLIPGDSSDSAVLKKAGAARA--RA 305 (393)
T ss_pred CCeEEEECC-ChHHHHHHHHHHHCCCCEEEEECch---------h--hhhccCCCcEEEeCCCCHHHHHhcCcccC--CE
Confidence 457999996 8999999999999999999888521 1 111223678999999999988875 3444 88
Q ss_pred EEEcc
Q 011841 197 VLHLA 201 (476)
Q Consensus 197 Vi~~A 201 (476)
||-+.
T Consensus 306 VI~~t 310 (393)
T PRK10537 306 ILALR 310 (393)
T ss_pred EEEcC
Confidence 87554
|
|
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.2 Score=49.05 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=50.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~ 192 (476)
..+.+|+|+|++|.+|..+++.+...|.+|+++++..+ ..... .. -++.. ..|..+.+ .+.+...+.
T Consensus 138 ~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~----~~~~~-~~----~g~~~-~~~~~~~~~~~~~~~~~~~~ 207 (323)
T cd05276 138 KAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEE----KLEAC-RA----LGADV-AINYRTEDFAEEVKEATGGR 207 (323)
T ss_pred CCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHH----HHHHH-HH----cCCCE-EEeCCchhHHHHHHHHhCCC
Confidence 35679999999999999999999999999999887332 11111 11 12221 22333322 233444444
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|.+++++|.
T Consensus 208 ~~d~vi~~~g~ 218 (323)
T cd05276 208 GVDVILDMVGG 218 (323)
T ss_pred CeEEEEECCch
Confidence 57999999874
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.47 Score=49.33 Aligned_cols=109 Identities=11% Similarity=0.144 Sum_probs=65.0
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC------eEEEEeCCCCCC--------------CchHHHHHHh----hhcCCceEEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD------GVLGLDNFNSYY--------------DPSLKRARQK----LLQKHQVFIV 175 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~------~V~~~~R~~~~~--------------~~~~~~~~~~----~~~~~~v~~~ 175 (476)
+|+|.|+ |.||.++++.|+..|. +++++|.+.=.. ...+.....+ ....-.++.+
T Consensus 1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 4899996 9999999999999997 788887544211 0111111111 1112244445
Q ss_pred EeecCCHH--HH-HHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 176 EGDLNDAP--LL-TKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 176 ~~Dl~d~~--~l-~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
...+.... .+ .+++++. |+||++.- |+..-..+-+.|...+++ +|...+.+.+|
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~--DvVi~alD-----------------n~~aR~~vn~~C~~~~iP--li~~gt~G~~G 136 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKL--DGVANALD-----------------NVDARMYVDRRCVYYRKP--LLESGTLGTKG 136 (435)
T ss_pred ecccChhhhhhhhHHHhcCC--CEEEECCC-----------------CHHHHHHHHHHHHHhCCC--EEEEeccccee
Confidence 44453211 11 3455655 99998753 344445667788888864 77777766555
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.32 Score=49.44 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=25.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHC-CCe---EEEEeC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR-GDG---VLGLDN 150 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~-G~~---V~~~~R 150 (476)
++|.|.||||++|+.+++.|+++ ... ++.+..
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss 37 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFST 37 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecc
Confidence 68999999999999999955554 555 666543
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.16 Score=54.13 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=31.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY 154 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~ 154 (476)
|+|.|+|+ |.+|..++..|+..|++|++.++..+.
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~~V~v~D~~~~~ 39 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGIDVAVFDPHPEA 39 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 58999985 999999999999999999999986543
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.39 Score=47.92 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=50.1
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
...+++|.|.| .|.||+.+++.|..-|.+|++.+|..... .++..+ ...++++++++++
T Consensus 133 ~l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~--------------~~~~~~----~~~~~l~e~l~~a-- 191 (312)
T PRK15469 133 HREDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSW--------------PGVQSF----AGREELSAFLSQT-- 191 (312)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCC--------------CCceee----cccccHHHHHhcC--
Confidence 35789999999 59999999999999999999998733210 111111 1245688889888
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+|+.+...
T Consensus 192 Dvvv~~lPl 200 (312)
T PRK15469 192 RVLINLLPN 200 (312)
T ss_pred CEEEECCCC
Confidence 999988754
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.51 Score=47.72 Aligned_cols=77 Identities=22% Similarity=0.291 Sum_probs=47.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+.+|+|+|+ |.||...++.+...|.+|++++|.... + .+.+....-++..+ |..+.+ +.+......+|+
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~--~----~~~~~~~~~Ga~~v--~~~~~~-~~~~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPP--D----PKADIVEELGATYV--NSSKTP-VAEVKLVGEFDL 241 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCC--H----HHHHHHHHcCCEEe--cCCccc-hhhhhhcCCCCE
Confidence 5679999986 999999999999999999999873210 1 11112222244432 332221 111111235699
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
||++.|.
T Consensus 242 vid~~g~ 248 (355)
T cd08230 242 IIEATGV 248 (355)
T ss_pred EEECcCC
Confidence 9999984
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.15 Score=50.04 Aligned_cols=37 Identities=24% Similarity=0.360 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNS 153 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~ 153 (476)
..+++|+|.|| |+.++.++..|++.| .+|+++.|..+
T Consensus 124 ~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ 161 (283)
T COG0169 124 VTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRE 161 (283)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 45789999997 999999999999999 57999999543
|
|
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.53 Score=46.51 Aligned_cols=78 Identities=24% Similarity=0.160 Sum_probs=50.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~ 192 (476)
..+.+|+|+|++|.+|..+++.+...|.+|+++++..+. .......++.. ..|..+.+ .+.+...+.
T Consensus 141 ~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~---------~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 210 (324)
T cd08244 141 TPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAK---------TALVRALGADV-AVDYTRPDWPDQVREALGGG 210 (324)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHH---------HHHHHHcCCCE-EEecCCccHHHHHHHHcCCC
Confidence 356789999999999999999999999999999874321 11111123221 12333332 344444444
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|.|+++.|.
T Consensus 211 ~~d~vl~~~g~ 221 (324)
T cd08244 211 GVTVVLDGVGG 221 (324)
T ss_pred CceEEEECCCh
Confidence 67999999874
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.14 Score=45.78 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=30.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEe
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD 149 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~ 149 (476)
.++++|+|.|| |-+|...++.|++.|++|++++
T Consensus 11 l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 11 LHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc
Confidence 57899999997 9999999999999999999885
|
|
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.53 Score=46.51 Aligned_cols=35 Identities=43% Similarity=0.415 Sum_probs=31.1
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
+.+|+|.|++|.+|..+++.+...|.+|+++++..
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKE 181 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 35899999999999999999999999999998743
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.52 Score=47.25 Aligned_cols=76 Identities=21% Similarity=0.168 Sum_probs=49.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+.+|+|+|++|.+|..+++.+...|.+|+++++.. . ...... -++. ...|..+.+....+.....+|.
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~-----~-~~~~~~----~g~~-~~~~~~~~~~~~~l~~~~~vd~ 230 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCSTD-----A-IPLVKS----LGAD-DVIDYNNEDFEEELTERGKFDV 230 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCcc-----h-HHHHHH----hCCc-eEEECCChhHHHHHHhcCCCCE
Confidence 378999999999999999999999999999887521 1 111111 1221 1223334333444433345799
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
|+++.|.
T Consensus 231 vi~~~g~ 237 (350)
T cd08248 231 ILDTVGG 237 (350)
T ss_pred EEECCCh
Confidence 9999874
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.56 Score=47.35 Aligned_cols=35 Identities=34% Similarity=0.380 Sum_probs=31.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
..+.+|+|.|+ |.||...++.+...|.+|+++++.
T Consensus 165 ~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~ 199 (349)
T TIGR03201 165 KKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDID 199 (349)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCC
Confidence 45779999999 999999999999999999998873
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.13 Score=46.94 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=32.0
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHH
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLK 160 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~ 160 (476)
+|.|.|| |.+|+.++..++..|++|++.+++.+..+...+
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~ 40 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARK 40 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhh
Confidence 5889998 999999999999999999999997665444333
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.67 Score=45.98 Aligned_cols=35 Identities=40% Similarity=0.489 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
..+.+|||.|++|.+|..+++.+.+.|.+|+++++
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~ 178 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG 178 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC
Confidence 35679999999999999999999999999999886
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.58 Score=47.61 Aligned_cols=75 Identities=15% Similarity=0.065 Sum_probs=47.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+.+|+|.|+ |.||..+++.+...|.+|++++...+.... . ...-++..+ .|..+.+.+.+... .+|+
T Consensus 183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~----~----~~~~Ga~~v-i~~~~~~~~~~~~~--~~D~ 250 (360)
T PLN02586 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDE----A----INRLGADSF-LVSTDPEKMKAAIG--TMDY 250 (360)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhh----H----HHhCCCcEE-EcCCCHHHHHhhcC--CCCE
Confidence 5679999775 999999999999999999888764331111 1 111133222 23334445555444 3599
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
||.+.|.
T Consensus 251 vid~~g~ 257 (360)
T PLN02586 251 IIDTVSA 257 (360)
T ss_pred EEECCCC
Confidence 9999874
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.18 Score=52.79 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=31.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
|+|.|+||.|.+|..+++.|.+.|++|++.+|+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~ 34 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDP 34 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 6899999999999999999999999999999843
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.45 Score=46.84 Aligned_cols=30 Identities=27% Similarity=0.355 Sum_probs=25.3
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC-eEEEEeC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDN 150 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R 150 (476)
+|||.|+ |.+|.++++.|+..|. +++++|.
T Consensus 1 kVLIvGa-GGLGs~vA~~La~aGVg~ItlvD~ 31 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLLGWGVRHITFVDS 31 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEECC
Confidence 5899997 9999999999999996 5666663
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.3 Score=50.72 Aligned_cols=75 Identities=11% Similarity=0.056 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..+++|+|.|+ |.+|+.++..|.+.|. +|+++.|..+. ......... ... ....+++.+.+..+
T Consensus 179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~r-----a~~La~~~~--~~~-----~~~~~~l~~~l~~a-- 243 (414)
T PRK13940 179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEK-----AQKITSAFR--NAS-----AHYLSELPQLIKKA-- 243 (414)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHH-----HHHHHHHhc--CCe-----EecHHHHHHHhccC--
Confidence 46789999997 9999999999999995 79999884321 111111111 122 22345667778777
Q ss_pred cEEEEccccCC
Q 011841 195 THVLHLAAQAG 205 (476)
Q Consensus 195 d~Vi~~Ag~~~ 205 (476)
|+||++.+...
T Consensus 244 DiVI~aT~a~~ 254 (414)
T PRK13940 244 DIIIAAVNVLE 254 (414)
T ss_pred CEEEECcCCCC
Confidence 99999998744
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.64 Score=47.04 Aligned_cols=77 Identities=25% Similarity=0.277 Sum_probs=48.0
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceE-EEEee-cCCH---HHHHHhhc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEGD-LNDA---PLLTKLFD 190 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~-~~~~D-l~d~---~~l~~~~~ 190 (476)
.+.+|||+| .|.+|..+++.+...|. +|+++++..+ +......-++. ++..+ ..+. ..+.++..
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~---------~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~ 246 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPE---------RLELAREFGADATIDIDELPDPQRRAIVRDITG 246 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHH---------HHHHHHHcCCCeEEcCcccccHHHHHHHHHHhC
Confidence 577999997 59999999999999999 8988876322 11111111322 22111 1111 23455555
Q ss_pred cCCccEEEEcccc
Q 011841 191 VVPFTHVLHLAAQ 203 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~ 203 (476)
+..+|+|+++.|.
T Consensus 247 ~~~~d~vid~~g~ 259 (361)
T cd08231 247 GRGADVVIEASGH 259 (361)
T ss_pred CCCCcEEEECCCC
Confidence 5567999999864
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.17 Score=51.00 Aligned_cols=68 Identities=18% Similarity=0.089 Sum_probs=48.6
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
...+++|.|.|. |.||+.+++.|...|.+|++.+|.... .... ..++. ..+++++++.+
T Consensus 147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~------~~~~----~~~~~--------~~~l~ell~~a-- 205 (333)
T PRK13243 147 DVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKP------EAEK----ELGAE--------YRPLEELLRES-- 205 (333)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCCh------hhHH----HcCCE--------ecCHHHHHhhC--
Confidence 468899999996 999999999999999999999984321 0000 01211 12466778777
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+|+.+.-.
T Consensus 206 DiV~l~lP~ 214 (333)
T PRK13243 206 DFVSLHVPL 214 (333)
T ss_pred CEEEEeCCC
Confidence 999988743
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.19 Score=52.15 Aligned_cols=68 Identities=18% Similarity=0.189 Sum_probs=47.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+++|+|+|. |.||+.+++.|...|.+|++.++..... .... ..+..+. + ++++++++ |
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra-------~~A~--~~G~~v~-----~---l~eal~~a--D 269 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICA-------LQAA--MDGFRVM-----T---MEEAAELG--D 269 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhh-------HHHH--hcCCEec-----C---HHHHHhCC--C
Confidence 57899999996 9999999999999999999998744211 1111 1133322 2 34556666 9
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+||.+.|.
T Consensus 270 VVI~aTG~ 277 (425)
T PRK05476 270 IFVTATGN 277 (425)
T ss_pred EEEECCCC
Confidence 99998764
|
|
| >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.57 Score=44.61 Aligned_cols=94 Identities=12% Similarity=0.011 Sum_probs=65.1
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
.|+|||.|||+ =++.|+++|...+..+++.+--. ........... .+.+--.+.+.+.++++..++|.|
T Consensus 2 ~~~ilvlGGT~-Dar~la~~L~~~~~~~~~ss~t~---------~g~~l~~~~~~-~~~~G~l~~e~l~~~l~e~~i~ll 70 (257)
T COG2099 2 MMRILLLGGTS-DARALAKKLAAAPVDIILSSLTG---------YGAKLAEQIGP-VRVGGFLGAEGLAAFLREEGIDLL 70 (257)
T ss_pred CceEEEEeccH-HHHHHHHHhhccCccEEEEEccc---------ccccchhccCC-eeecCcCCHHHHHHHHHHcCCCEE
Confidence 47899999975 58999999999885444443211 11111111122 555666788999999999999999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~ 237 (476)
|+..=+. -.+-+.|.+++|++.|++
T Consensus 71 IDATHPy---------------Aa~iS~Na~~aake~gip 95 (257)
T COG2099 71 IDATHPY---------------AARISQNAARAAKETGIP 95 (257)
T ss_pred EECCChH---------------HHHHHHHHHHHHHHhCCc
Confidence 9975321 234478999999999986
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.55 Score=45.87 Aligned_cols=99 Identities=13% Similarity=0.057 Sum_probs=58.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
....+|+|.|++|-+|+.+++.+.+.+.+++...-.....+.. .. +-.++ ..-+..++++++++...
T Consensus 9 ~~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~----~~---~~~g~---~v~~~~~~dl~~~l~~~~~~ 78 (286)
T PLN02775 9 GSAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGV----TV---EVCGV---EVRLVGPSEREAVLSSVKAE 78 (286)
T ss_pred CCCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccc----cc---eeccc---eeeeecCccHHHHHHHhhcc
Confidence 3447999999999999999999999888877744211110000 00 00011 11222123344444333
Q ss_pred Ccc-EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 193 PFT-HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 193 ~~d-~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
.+| ++|++.-+ ..+...++.|.+.|+. +|.-+
T Consensus 79 ~~~~VvIDFT~P------------------~a~~~~~~~~~~~g~~--~VvGT 111 (286)
T PLN02775 79 YPNLIVVDYTLP------------------DAVNDNAELYCKNGLP--FVMGT 111 (286)
T ss_pred CCCEEEEECCCh------------------HHHHHHHHHHHHCCCC--EEEEC
Confidence 679 89988643 2355778889999974 55333
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.19 Score=49.56 Aligned_cols=37 Identities=27% Similarity=0.110 Sum_probs=32.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY 154 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~ 154 (476)
.-++|.|.|+ |.+|..++..|+.+|++|++.+|+.+.
T Consensus 3 ~~~kI~vIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~ 39 (292)
T PRK07530 3 AIKKVGVIGA-GQMGNGIAHVCALAGYDVLLNDVSADR 39 (292)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence 3468999997 999999999999999999999996553
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.26 Score=49.44 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=33.3
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
...+|+|-|.|. |-||+.+++.|..-|.+|++.++..
T Consensus 139 el~gkTvGIiG~-G~IG~~va~~l~afgm~v~~~d~~~ 175 (324)
T COG0111 139 ELAGKTVGIIGL-GRIGRAVAKRLKAFGMKVIGYDPYS 175 (324)
T ss_pred cccCCEEEEECC-CHHHHHHHHHHHhCCCeEEEECCCC
Confidence 357899999995 9999999999999999999999843
|
|
| >KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.51 Score=46.01 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=65.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++.+|+|.||+|-+|+-+-+...-.|..|++..-+.+ +-..+....-.-...|.-++..+.++++.+
T Consensus 152 k~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~E---------Kv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~ 222 (343)
T KOG1196|consen 152 KKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKE---------KVDLLKTKFGFDDAFNYKEESDLSAALKRCFPE 222 (343)
T ss_pred CCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChh---------hhhhhHhccCCccceeccCccCHHHHHHHhCCC
Confidence 46689999999999999888888888999999876332 112221110000112333332344444332
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCC
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN 252 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~ 252 (476)
.+|+-+.|.|-- + ...++..++.+| |++.+.-++.|...
T Consensus 223 GIDiYfeNVGG~----------------~--lDavl~nM~~~g---ri~~CG~ISqYN~~ 261 (343)
T KOG1196|consen 223 GIDIYFENVGGK----------------M--LDAVLLNMNLHG---RIAVCGMISQYNLE 261 (343)
T ss_pred cceEEEeccCcH----------------H--HHHHHHhhhhcc---ceEeeeeehhcccc
Confidence 569999999861 1 113333344444 89999999988544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 476 | ||||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 4e-31 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 5e-31 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 5e-31 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-30 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 2e-30 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 4e-23 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 5e-23 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 1e-22 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 1e-21 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 2e-20 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 4e-20 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 7e-20 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 8e-20 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 8e-20 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 1e-19 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-19 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-19 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 2e-19 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 3e-19 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-19 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 5e-19 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 1e-18 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 1e-18 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 7e-18 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 8e-18 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 2e-17 | ||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 3e-16 | ||
| 4egb_A | 346 | 3.0 Angstrom Resolution Crystal Structure Of Dtdp-G | 5e-16 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 6e-16 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 2e-15 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 3e-15 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 3e-15 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 1e-14 | ||
| 3enk_A | 341 | 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase F | 2e-14 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 8e-14 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 1e-13 | ||
| 2c59_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 1e-13 | ||
| 2c5e_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 2e-13 | ||
| 2c54_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 2e-13 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 3e-13 | ||
| 2c5a_A | 379 | Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana | 3e-13 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 9e-11 | ||
| 3m2p_A | 311 | The Crystal Structure Of Udp-N-Acetylglucosamine 4- | 6e-09 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 2e-08 | ||
| 1gy8_A | 397 | Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt | 1e-07 | ||
| 2z1m_A | 345 | Crystal Structure Of Gdp-D-Mannose Dehydratase From | 3e-07 | ||
| 1n7g_A | 381 | Crystal Structure Of The Gdp-mannose 4,6-dehydratas | 4e-07 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 8e-07 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 1e-06 | ||
| 1eq2_A | 310 | The Crystal Structure Of Adp-L-Glycero-D-Mannohepto | 2e-06 | ||
| 1wvg_A | 359 | Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal | 4e-06 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 5e-06 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 5e-06 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 5e-06 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 5e-06 | ||
| 2x6t_A | 357 | Agme Bound To Adp-B-Mannose Length = 357 | 7e-06 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 1e-05 | ||
| 1db3_A | 372 | E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | 1e-05 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 1e-05 | ||
| 2yy7_A | 312 | Crystal Structure Of Thermolabile L-Threonine Dehyd | 2e-05 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 2e-05 | ||
| 4id9_A | 347 | Crystal Structure Of A Short-Chain DehydrogenaseRED | 3e-05 | ||
| 3ay3_A | 267 | Crystal Structure Of Glucuronic Acid Dehydrogeanse | 3e-05 | ||
| 2zkl_A | 369 | Crystal Structure Of Capsular Polysaccharide Assemb | 3e-05 | ||
| 3slg_A | 372 | Crystal Structure Of Pbgp3 Protein From Burkholderi | 4e-05 | ||
| 1rpn_A | 335 | Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase | 6e-05 | ||
| 1rkx_A | 357 | Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose | 1e-04 | ||
| 3st7_A | 369 | Crystal Structure Of Capsular Polysaccharide Assemb | 2e-04 |
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From Burkholderia Pseudomallei Length = 341 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), K178r, With Gdp-Beta-L-Gulose And Gdp-4-Keto-Beta-L-Gulose Bound In Active Site. Length = 379 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), Y174f, With Gdp-Beta-L-Galactose Bound In The Active Site Length = 379 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine 4-Epimerase From Bacillus Cereus Length = 311 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397 | Back alignment and structure |
|
| >pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From Aquifex Aeolicus Vf5 Length = 345 | Back alignment and structure |
|
| >pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase Ternary Complex With Nadph And Gdp-rhamnose. Length = 381 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|1EQ2|A Chain A, The Crystal Structure Of Adp-L-Glycero-D-Mannoheptose 6- Epimerase Length = 310 | Back alignment and structure |
|
| >pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose Length = 357 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|2YY7|A Chain A, Crystal Structure Of Thermolabile L-Threonine Dehydrogenase From Flavobacterium Frigidimaris Kuc-1 Length = 312 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
| >pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE SUPERFAMILY Protein From Agrobacterium Tumefaciens (Target Efi-506441) With Bound Nad, Monoclinic Form 1 Length = 347 | Back alignment and structure |
|
| >pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From Chromohalobacter Salexigens Length = 267 | Back alignment and structure |
|
| >pdb|2ZKL|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling Protein Capf From Staphylococcus Aureus Length = 369 | Back alignment and structure |
|
| >pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372 | Back alignment and structure |
|
| >pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In Complexes With Gdp And Nadph Length = 335 | Back alignment and structure |
|
| >pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6- Dehydratase From Yersinia Pseudotuberculosis Length = 357 | Back alignment and structure |
|
| >pdb|3ST7|A Chain A, Crystal Structure Of Capsular Polysaccharide Assembling Protein Capf From Staphylococcus Aureus Length = 369 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 476 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 1e-133 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 1e-127 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-116 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 1e-108 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 1e-106 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 1e-102 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 4e-91 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 2e-89 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 2e-82 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 7e-72 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 2e-69 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 5e-69 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 2e-68 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 5e-68 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 1e-62 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 6e-60 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 1e-56 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 7e-54 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 7e-48 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 1e-46 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 7e-44 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 3e-42 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 4e-42 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 2e-40 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 2e-40 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 8e-39 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 3e-38 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 5e-38 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 2e-37 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 2e-34 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 1e-33 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 6e-30 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 7e-29 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 4e-22 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 3e-20 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 2e-19 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 3e-18 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 6e-18 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 3e-17 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 8e-17 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 1e-16 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 3e-16 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 7e-14 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 3e-13 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 2e-11 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 6e-10 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 1e-08 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 2e-08 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 2e-07 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 2e-07 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 2e-07 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 2e-07 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 3e-07 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 5e-07 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 5e-07 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 6e-07 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 9e-07 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 2e-06 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 2e-06 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 2e-06 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 3e-06 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 4e-06 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 6e-06 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 7e-06 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 1e-05 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 2e-05 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 4e-05 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 8e-05 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 1e-04 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 1e-04 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 4e-04 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 4e-04 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 4e-04 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 4e-04 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 6e-04 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 8e-04 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 8e-04 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 387 bits (996), Expect = e-133
Identities = 103/344 (29%), Positives = 162/344 (47%), Gaps = 28/344 (8%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQ-KLLQKHQVF-I 174
+ T L+TG AGF+GS+ L K V+GLDNF++ + +L + ++ F
Sbjct: 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCF 83
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
+EGD+ D ++ HVLH AA V ++ +P + A+NI GF+N+L K+
Sbjct: 84 IEGDIRDLTTCEQVMK--GVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNA 141
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTG 294
Q S +A+SSS YG + +P E + P S YA TK E A Y YG G
Sbjct: 142 QVQ-SFTYAASSSTYGDHPALPKVEEN-IGNPLSPYAVTKYVNEIYAQVYARTYGFKTIG 199
Query: 295 LRFFTVYGPWGRPDMAY----FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350
LR+F V+G P+ AY +T +L+G + + D E +RDF YID+V++ +
Sbjct: 200 LRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYIN---GDGETSRDFCYIDNVIQMNI 256
Query: 351 GALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA--KKHVIRM- 407
+ + +YN+ + L + + LN K I+
Sbjct: 257 LSALAKDSAKD-----------NIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYR 305
Query: 408 -PRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
R+GDV ++ A+V+ A Y+P + GLR + WYV +
Sbjct: 306 EFRSGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFL 349
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 371 bits (956), Expect = e-127
Identities = 98/341 (28%), Positives = 158/341 (46%), Gaps = 28/341 (8%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ--VFIVEG 177
L+TG AGF+GS+ L K V+GLDNF + + +L R + +K ++G
Sbjct: 29 VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG 88
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + +VLH AA V ++ +P + A+NI GF+N+L + Q
Sbjct: 89 DIRNLDDCNNACA--GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ 146
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
S +A+SSS YG + +P E +P S YA TK E A ++ YG + GLR+
Sbjct: 147 -SFTYAASSSTYGDHPGLPKVEDT-IGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRY 204
Query: 298 FTVYGPWGRPDMAY----FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353
F V+G P+ AY +T ++QG + + D E +RDF YI++ V+ + A
Sbjct: 205 FNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQANLLAA 261
Query: 354 DTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM----PR 409
+ +VYN+ + +L L + L + R
Sbjct: 262 TAGLDARN-----------QVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFR 310
Query: 410 NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
GDV ++ A++S A K GY P D++AG+ + WY+ +
Sbjct: 311 EGDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMFL 351
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 342 bits (880), Expect = e-116
Identities = 80/347 (23%), Positives = 126/347 (36%), Gaps = 38/347 (10%)
Query: 106 QVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQK 165
PR + V +TG G +GSH + L +RGD V+G+DNF + LK
Sbjct: 9 HHSSGLVPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLK----- 63
Query: 166 LLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFV 225
+ VEG + D L+ +L + V+H AA + +N G
Sbjct: 64 --DHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDD---WYNDTLTNCVGGS 118
Query: 226 NLLEVCKSVNPQPSIVWASSSSVYGLN-TQVPFSESHRTDQPASLYAATKKAGEEIAHTY 284
N+++ K N V+ ++ YG+ Q P H + S YA +K A E Y
Sbjct: 119 NVVQAAKKNNVG-RFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANE----DY 173
Query: 285 NHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344
GL R V GP F + + +GK V K + RDF ++ D
Sbjct: 174 LEYSGLDFVTFRLANVVGPRNVSGP-LPIFFQRLSEGKKCFVTKAR------RDFVFVKD 226
Query: 345 VVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV 404
+ + V A+D G Y+ + + V + L + + +
Sbjct: 227 LARATVRAVDGVGH--------------GAYHFSSGTDVAIKELYDAVVEAMALPSYPEP 272
Query: 405 IRMP-RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
D P + S +DFG T L + V ++ Y
Sbjct: 273 EIRELGPDDAPSILLDPSRTIQDFGKIEFTPLKETVAAAVAYFREYG 319
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 322 bits (827), Expect = e-108
Identities = 88/336 (26%), Positives = 133/336 (39%), Gaps = 39/336 (11%)
Query: 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF 173
R +L+TG AGF+G H + AL G+ V LD+ P + + V
Sbjct: 3 RNTLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLR--VPPMIPPEGTGKFLEKPVL 60
Query: 174 -IVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK 232
+ E DL+D + V HLA+ V + + P Y+ N+ +LL +C
Sbjct: 61 ELEERDLSD-------VRL-----VYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCT 107
Query: 233 SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
SV +V S+ VYG +P E P S YAA+K E +A +
Sbjct: 108 SVGVP-KVVVGSTCEVYGQADTLPTPEDS-PLSPRSPYAASKVGLEMVAGAHQRASVAPE 165
Query: 293 TG-LRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351
G +RFF VYGP RPD ++L + V D E RDFTYI DVV V
Sbjct: 166 VGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVE---GDGEQRRDFTYITDVVDKLVA 222
Query: 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 411
+ V N G+ + V ++ IL+ PR
Sbjct: 223 LANRPLP--------------SVVNFGSGQSLSVNDVIRILQATSPAAEVARKQ--PRPN 266
Query: 412 DVPYTHANVSLAYKDFGYKP-TTDLAAGLRKFVKWY 446
++ A+ +L + G + + G+R ++W+
Sbjct: 267 EITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWW 302
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 317 bits (815), Expect = e-106
Identities = 63/333 (18%), Positives = 127/333 (38%), Gaps = 29/333 (8%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+ GA G +G+ + L+K + G +N + +++ ++ +V +
Sbjct: 3 PKILIIGACGQIGTELTQKLRK----LYGTENVIASD---IRKLNTDVVNSGPFEVV--N 53
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
D + L +V T + +AA +NP N+ ++L + K+ +
Sbjct: 54 ALDFNQIEHLVEVHKITDIYLMAALLSATA-EKNPAFAWDLNMNSLFHVLNLAKAKKIK- 111
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
I W SS +V+G T + + +P+++Y +K+AGE Y++IYG+ + +R+
Sbjct: 112 KIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYP 171
Query: 299 TVYGP-----WGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353
+ G D A F K + K + + E Y+DD + + +
Sbjct: 172 GLISWSTPPGGGTTDYAVDIFYK-AIADKKYECF---LSSETKMPMMYMDDAIDATINIM 227
Query: 354 DTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV 413
+ YNL S P I +++ + D
Sbjct: 228 KAPVEKIKIH---------SSYNLAAMSFTPTEIANEIKKHIPEFTITYEPDFRQKIADS 278
Query: 414 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
+ S A +D+ +K T DL + + ++
Sbjct: 279 WPASIDDSQAREDWDWKHTFDLESMTKDMIEHL 311
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 306 bits (787), Expect = e-102
Identities = 67/328 (20%), Positives = 120/328 (36%), Gaps = 37/328 (11%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + VTG GF+G + ++K G+ + L + D
Sbjct: 3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAINDYE------------YRVSD 50
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L+ +L DV V+HLAA G + + N NL + C N
Sbjct: 51 YTLEDLINQLNDV---DAVVHLAATRGSQGKISEFHD----NEILTQNLYDACYENNIS- 102
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+IV+AS+ S Y T +P++E P +Y +K A E I + Y+ GL + LRF
Sbjct: 103 NIVYASTISAYSDETSLPWNEKELPL-PDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFA 161
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358
+YG + + F + G+ + ++ + R+F Y D K + AL
Sbjct: 162 HLYGFNEKNNYMINRFFRQAFHGEQLTLHA---NSVAKREFLYAKDAAKSVIYALKQEKV 218
Query: 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHA 418
S +N+G+ + + + + N K V N + ++
Sbjct: 219 S-------------GTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYM 265
Query: 419 NVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
+ S A + + + A + +
Sbjct: 266 DSSKAKELLDFSTDYNFATAVEEIHLLM 293
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 280 bits (719), Expect = 4e-91
Identities = 89/344 (25%), Positives = 152/344 (44%), Gaps = 37/344 (10%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQ----KLLQKH 170
T+L+TG AGFVGS+ + ++ V+ LD F S S R K L
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68
Query: 171 QVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV 230
+ ++ D+N+ PL + + + F ++ H AA + M N + + +N F+NLLE+
Sbjct: 69 KGEVIAADINN-PLDLRRLEKLHFDYLFHQAAVSDTT--MLNQELVMKTNYQAFLNLLEI 125
Query: 231 CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGL 290
+S + +++ASS+ VYG NT+ P + P ++Y +K +E +++
Sbjct: 126 ARSKKAK--VIYASSAGVYG-NTKAPNVVGK-NESPENVYGFSKLCMDEFVLSHS--NDN 179
Query: 291 ALTGLRFFTVYGPWGRPDMAY----FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346
GLR+F VYGP + K + +++ E RDF YI+DV+
Sbjct: 180 VQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLFE---FGEQLRDFVYIEDVI 236
Query: 347 KGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 406
+ V A+ G VYN+G + +VSIL+ L K I+
Sbjct: 237 QANVKAMKA-----QKSG---------VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIK 281
Query: 407 MPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
P +T A++ D Y P DL +G++ ++ + +
Sbjct: 282 NPYAFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPHIHAIF 325
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 2e-89
Identities = 86/336 (25%), Positives = 137/336 (40%), Gaps = 38/336 (11%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M ++VTG AGF+GSH L + G V+ +DN +S + + D
Sbjct: 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVN---------PSAELHVRD 51
Query: 179 LNDAPLLTKL-FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
L D + DVV H AA VR + P + N+ N+LE + +
Sbjct: 52 LKDYSWGAGIKGDVV-----FHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR 106
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
++V+ASSS+VYG +P E P S+Y A K AGE + TY ++G+ +R+
Sbjct: 107 -TVVFASSSTVYGDADVIPTPEEEPYK-PISVYGAAKAAGEVMCATYARLFGVRCLAVRY 164
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYK--TQDDREVARDFTYIDDVVKGCVGALDT 355
V GP R + Y F K ++V TQ + + Y+ D V+ + A
Sbjct: 165 ANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQ-----RKSYLYVRDAVEATLAAWKK 219
Query: 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI-----RMPRN 410
+ N+GN V V + I+ +L + + ++
Sbjct: 220 FEEMDAPF---------LALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWP 270
Query: 411 GDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
GDV Y V+ K G++PT A ++K +
Sbjct: 271 GDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDL 306
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 256 bits (657), Expect = 2e-82
Identities = 78/332 (23%), Positives = 130/332 (39%), Gaps = 38/332 (11%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
++VTG AGF+GSH L + + ++ +DN +S + + +V+ D
Sbjct: 2 SLIVVTGGAGFIGSHVVDKLSESNE-IVVIDNLSSGNEEFVN---------EAARLVKAD 51
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L + L V H+AA VR +NP +N+ LLE +
Sbjct: 52 LAADDIKDYLKGA---EEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS- 107
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
IV+ S+S+VYG +P E + T P SLY A+K A E + +Y H + + RF
Sbjct: 108 RIVFTSTSTVYGEAKVIPTPEDYPTH-PISLYGASKLACEALIESYCHTFDMQAWIYRFA 166
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVY--KTQDDREVARDFTYIDDVVKGCVGALDTA 356
V G + Y F K + +++ Q + + YI D V + L
Sbjct: 167 NVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQ-----NKSYIYISDCVDAMLFGLRGD 221
Query: 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI--RMPRNGDVP 414
+ ++N+G+ + V R+ I+ L + GDVP
Sbjct: 222 ERV-------------NIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVP 268
Query: 415 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
++ K G+KP + +R V+
Sbjct: 269 VMLLSIEKL-KRLGWKPRYNSEEAVRMAVRDL 299
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 229 bits (586), Expect = 7e-72
Identities = 55/339 (16%), Positives = 110/339 (32%), Gaps = 34/339 (10%)
Query: 121 VLVTGAAGFVGSHCSLAL-KKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+LVTG++G +G+ L +K G + + +K + D+
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIK-------------FITLDV 48
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
++ + + + + HLA + ++P N+ G N+LE K
Sbjct: 49 SNRDEIDRAVEKYSIDAIFHLAGILSAK-GEKDPALAYKVNMNGTYNILEAAKQHRV-EK 106
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
+V S+ V+G T S +P +++ TK A E + Y +GL + LR+
Sbjct: 107 VVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPG 166
Query: 300 VYGPWGRPDMAYF----FFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355
+ P ++ + Y A Y+ D +K V +
Sbjct: 167 IISYKAEPTAGTTDYAVEIFYYAVKREKYKCY---LAPNRALPMMYMPDALKALVDLYEA 223
Query: 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI-RMPRNGDVP 414
YN+ + L S ++ + ++ +
Sbjct: 224 DRDKLVLR---------NGYNVTAYT-FTPSELYSKIKERIPEFEIEYKEDFRDKIAATW 273
Query: 415 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 453
+ S A ++G+ DL + + GI+
Sbjct: 274 PESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEKLGIE 312
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 225 bits (575), Expect = 2e-69
Identities = 75/367 (20%), Positives = 134/367 (36%), Gaps = 50/367 (13%)
Query: 117 NGMTVLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF-I 174
V+V G AGFVGS+ L+ + V +DN S A + + H
Sbjct: 31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLS--------AEKINVPDHPAVRF 82
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
E + D LL L D + +V HLA G + ++ +P + +N + L E K
Sbjct: 83 SETSITDDALLASLQD--EYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHF 140
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTD-----QPASLYAATKKAGEEIAHTYNHIYG 289
+V++++ T + TD S Y+ +K GE + Y+ +
Sbjct: 141 KRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQ 200
Query: 290 LALTGLRFFTVYGPWGRPDMAYFF-------------FTKDILQGKTIDVYKTQDDREVA 336
L RF VYGP + F L+G + + +
Sbjct: 201 LPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLE---NGGVAT 257
Query: 337 RDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL 396
RDF +++DV L GG VYN+ + + L + + +
Sbjct: 258 RDFIFVEDVAN----GLIACAADGTPGG---------VYNIASGKETSIADLATKINEIT 304
Query: 397 NTKAKKHVIRMP-RNGDVP-YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQP 454
+ + R+P R D + A ++ G+ + GLRK ++W + +
Sbjct: 305 GNNTE--LDRLPKRPWDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANLAVIE 362
Query: 455 RVKKENG 461
++ +++
Sbjct: 363 QIMRKHD 369
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 5e-69
Identities = 64/336 (19%), Positives = 117/336 (34%), Gaps = 41/336 (12%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQV--FIVEG 177
++VTG AGF+GS+ AL +G +L +DN + L + ++ +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT-------KFVNLVDLNIADYMDKE 54
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D + + F + H A + + +N LL C
Sbjct: 55 DFLIQIMAGEEFG--DVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLEREIP 110
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
++ASS++ YG T +P ++Y +K +E + G R+
Sbjct: 111 --FLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKFLFDEYVRQILPEANSQIVGFRY 167
Query: 298 FTVYGPWGRPDMAY----FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353
F VYGP + F + G++ +++ RDF Y+ DV + L
Sbjct: 168 FNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFE--GSENFKRDFVYVGDVADVNLWFL 225
Query: 354 DTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---RN 410
+ SG ++NLG + K + I P +
Sbjct: 226 ENG----VSG----------IFNLGTGRAESFQAVADATLAYH-KKGQIEYIPFPDKLKG 270
Query: 411 GDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
+T A+++ KP +A G+ +++ W
Sbjct: 271 RYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 221 bits (566), Expect = 2e-68
Identities = 74/383 (19%), Positives = 131/383 (34%), Gaps = 49/383 (12%)
Query: 82 HQHSLLSSSFF---SSSFSTGGAEWEKQVRHSATPRRP-----NGMTVLVTGAAGFVGSH 133
H H SS S T A++E+Q S G ++VTG AGF+GS+
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTGGGSGIEGRMIIVTGGAGFIGSN 61
Query: 134 CSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQV--FIVEGDLNDAPLLTKLFD 190
AL +G +L +DN + L + ++ + D + + F
Sbjct: 62 IVKALNDKGITDILVVDNLKDGT-------KFVNLVDLNIADYMDKEDFLIQIMAGEEFG 114
Query: 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250
+ H A + + +N LL C ++ASS++ YG
Sbjct: 115 --DVEAIFHEGACSSTTEWDGKY--MMDNNYQYSKELLHYCLEREIP--FLYASSAATYG 168
Query: 251 LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA 310
T +P +++ +K +E + G R+F VYGP +
Sbjct: 169 GRTSDFIESREYE-KPLNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGS 227
Query: 311 Y----FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKK 366
F + G++ +++ RDF Y+ DV + L+ SG
Sbjct: 228 MASVAFHLNTQLNNGESPKLFE--GSENFKRDFVYVGDVADVNLWFLENG----VSG--- 278
Query: 367 RGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---RNGDVPYTHANVSLA 423
++NLG + K + I P + +T A+++
Sbjct: 279 -------IFNLGTGRAESFQAVADATLAYH-KKGQIEYIPFPDKLKGRYQAFTQADLTNL 330
Query: 424 YKDFGYKPTTDLAAGLRKFVKWY 446
KP +A G+ +++ W
Sbjct: 331 RAAGYDKPFKTVAEGVTEYMAWL 353
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 5e-68
Identities = 92/339 (27%), Positives = 139/339 (41%), Gaps = 43/339 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M VLVTG AGF+GSH L RG V LDN + ++ V D
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVP---------KGVPFFRVD 51
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D + + F THV H AAQA V+ ++++P N+ G +NLLE C+
Sbjct: 52 LRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGV-E 110
Query: 239 SIVWASSS-SVYGLN-TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+V+AS+ ++YG E+ +P S YAA+K A E Y YGL LR
Sbjct: 111 KLVFASTGGAIYGEVPEGERAEETWPP-RPKSPYAASKAAFEHYLSVYGQSYGLKWVSLR 169
Query: 297 FFTVYGPWGRPD-------MAYFFFTKDILQGKTIDVYKTQD--DREVARDFTYIDDVVK 347
+ VYGP P + F + +L+G + +Y + D RD+ Y+ DV +
Sbjct: 170 YGNVYGPRQDPHGEAGVVAI----FAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAE 225
Query: 348 GCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM 407
AL + +YN+G ++ + KA +
Sbjct: 226 AHALALFSLE---------------GIYNVGTGEGHTTREVLMAVAEAAG-KAPEVQPAP 269
Query: 408 PRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
PR GD+ + + G++P G+R V +
Sbjct: 270 PRPGDLERSVLSPLKL-MAHGWRPKVGFQEGIRLTVDHF 307
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 205 bits (525), Expect = 1e-62
Identities = 71/341 (20%), Positives = 123/341 (36%), Gaps = 43/341 (12%)
Query: 110 SATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQ 168
S R + M +L+TG AG +GS+ +G +L +DNF R+ L
Sbjct: 12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGK--------REVLPP 63
Query: 169 KHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLL 228
+ ++EG + DA LL + FD THV+H AA + A+N+ G +N+
Sbjct: 64 VAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAYKD---PDDWAEDAATNVQGSINVA 120
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY 288
+ ++ ++ YG VP T P + Y +K AGE
Sbjct: 121 KAASKAGV-KRLLNFQTALCYGRPATVPIPIDSPT-APFTSYGISKTAGEAFLMM----S 174
Query: 289 GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK--TIDVYKTQDDREVARDFTYIDDVV 346
+ + LR V GP F+ + + G+ RDF + D +
Sbjct: 175 DVPVVSLRLANVTGPRLAIGPIPTFYKR-LKAGQKCFCSDT--------VRDFLDMSDFL 225
Query: 347 KGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK-HVI 405
+L + V+N+ + + ++ + + + +
Sbjct: 226 AIADLSLQEGRPT-------------GVFNVSTGEGHSIKEVFDVVLDYVGATLAEPVPV 272
Query: 406 RMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
P DVP + S +FG+K D + + WY
Sbjct: 273 VAPGADDVPSVVLDPSKTETEFGWKAKVDFKDTITGQLAWY 313
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 200 bits (509), Expect = 6e-60
Identities = 64/356 (17%), Positives = 120/356 (33%), Gaps = 73/356 (20%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +++TGA GFVG + L D H +F V
Sbjct: 1 MNIVITGAKGFVGKNLKADLTSTTD--------------------------HHIFEVHRQ 34
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ L + L ++HLA ++ + + N++ ++L++ +P
Sbjct: 35 TKEEELESALLKA---DFIVHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKP 87
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+I+ SSS + Y +K GE++ Y YG + R+
Sbjct: 88 AILL-SSSIQAT---------------QDNPYGESKLQGEQLLREYAEEYGNTVYIYRWP 131
Query: 299 TVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356
++G W +P+ F I + + I V DR V Y+DD+V A++
Sbjct: 132 NLFGKWCKPNYNSVIATFCYKIARNEEIQVN----DRNVELTLNYVDDIVAEIKRAIEGT 187
Query: 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYT 416
V + N V +G +V +L ++ + + ++ +
Sbjct: 188 PTIEN-----------GVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLDNLFEKDLY 236
Query: 417 HANVS---LAYKDFGYKPTTDLAAGLRKFVK----WYVSYYGIQPRVKKENGFSTT 465
+S + D +F+K VS +P + K N + T
Sbjct: 237 STYLSYLPSTDFSYPLLMNVDDRGSFTEFIKTPDRGQVSVNISKPGITKGNHWHHT 292
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 1e-56
Identities = 64/350 (18%), Positives = 109/350 (31%), Gaps = 46/350 (13%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRG-------DGVLGLDNFNSYYDPSLKRARQKLLQK 169
GM + + GAAG VG + L K G + +D F
Sbjct: 13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFS--------- 63
Query: 170 HQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
V DL+ KL + + HLAA A + N+ G L +
Sbjct: 64 GAVDARAADLSAPGEAEKLVEA-RPDVIFHLAAIVSGE-AELDFDKGYRINLDGTRYLFD 121
Query: 230 VCKSVN----PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYN 285
+ N +P +V+ SS +V+G P + T P + Y K E + Y+
Sbjct: 122 AIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHT-TPLTSYGTQKAICELLLSDYS 180
Query: 286 HIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ----GKTIDVYKTQDDREVARDFTY 341
G+R T+ G+P+ A F +IL+ G+ +
Sbjct: 181 RRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQE---AVLPVPESIRHWHAS 237
Query: 342 IDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK 401
V + + G R ++ S VG + L + KA
Sbjct: 238 PRSAVGFLIHGAMIDVEKVGPR---------RNLSMPGLS-ATVGEQIEALRKVAGEKAV 287
Query: 402 KHVIRMP-----RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
+ R P R + A ++ G+ + ++ ++
Sbjct: 288 ALIRREPNEMIMRMCEGWAPGFEAKRA-RELGFTAESSFEEIIQVHIEDE 336
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 7e-54
Identities = 74/384 (19%), Positives = 121/384 (31%), Gaps = 61/384 (15%)
Query: 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF--------------NSYYDPSL 159
+G V+V G G+ G +L L K+ V +DN
Sbjct: 7 HHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHD 66
Query: 160 KRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQS---Y 216
+ +R K L + + GD+ D L + F V+H Q Y+M +
Sbjct: 67 RISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYT 126
Query: 217 VASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG------LNTQVPFSESHRTD------ 264
+N+ G +N+L K + +V + YG + + + RTD
Sbjct: 127 QHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPK 186
Query: 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPW-----------GRPDMAYFF 313
Q +S Y +K +G+ T L VYG R D F
Sbjct: 187 QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVF 246
Query: 314 ------FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKR 367
F G + VY R + I D V+ A+ K
Sbjct: 247 GTALNRFCVQAAVGHPLTVYGKGGQT---RGYLDIRDTVQCVEIAIANPAK--------- 294
Query: 368 GPAQLRVYNLGN--TSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYK 425
+ RV+N S + LV+ + L KK + PR + +
Sbjct: 295 -AGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM 353
Query: 426 DFGYKPTTDLAAGLRKFVKWYVSY 449
+ G +P + L + + V +
Sbjct: 354 ELGLEPHYLSDSLLDSLLNFAVQF 377
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 7e-48
Identities = 76/364 (20%), Positives = 132/364 (36%), Gaps = 45/364 (12%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
+ + +TGA GF+ SH + LK G V+ D + + + F +
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE--------FHL- 78
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQA-GVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
DL K+ + HV +LAA G+ + N + +N N++E +
Sbjct: 79 VDLRVMENCLKVTE--GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARING 136
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHR------TDQPASLYAATKKAGEEIAHTYNHIYG 289
+ +ASS+ +Y Q+ + +P + K A EE+ YN +G
Sbjct: 137 IK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFG 195
Query: 290 LALTGLRFFTVYGPWGRPDMAYF-----FFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344
+ RF +YGP+G F K +++ D R FT+ID+
Sbjct: 196 IECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWG---DGLQTRSFTFIDE 252
Query: 345 VVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV 404
V+G + S N+G+ V + + ++ + K H
Sbjct: 253 CVEGVLRLTK----SDFRE----------PVNIGSDEMVSMNEMAEMVLSFEEKKLPIHH 298
Query: 405 IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFST 464
I P V +++ +L + G+ P L GLR W I+ K + S
Sbjct: 299 IPGP--EGVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQ--IEKEKAKGSDVSL 354
Query: 465 TTST 468
S+
Sbjct: 355 YGSS 358
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 1e-46
Identities = 48/193 (24%), Positives = 77/193 (39%), Gaps = 21/193 (10%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+LVTGAAG VGS L V D + + + IV DL
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEE------------IVACDL 51
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLEVCKSVNPQP 238
DA + L ++HL + ++ P + +NI G NL E +++ P
Sbjct: 52 ADAQAVHDLVK--DCDGIIHLGGVS-----VERPWNDILQANIIGAYNLYEAARNLGK-P 103
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
IV+ASS+ G + ++ +P SLY +K GE++A Y H + + +R
Sbjct: 104 RIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIG 163
Query: 299 TVYGPWGRPDMAY 311
+ + M
Sbjct: 164 SCFPKPKDARMMA 176
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 7e-44
Identities = 82/339 (24%), Positives = 139/339 (41%), Gaps = 39/339 (11%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
+ +L+TG AGFVGSH + L G V +DNF + KR + + +
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT----GRKRNVEHWIGHENFEL 79
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
+ D+ + PL + + HLA+ A M NP + +N G +N+L + K V
Sbjct: 80 INHDVVE-PLY------IEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRV 132
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHR----TDQPASLYAATKKAGEEIAHTYNHIYGL 290
+ ++ AS+S VYG P SE + P + Y K+ E + + Y G+
Sbjct: 133 GAR--LLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGV 190
Query: 291 ALTGLRFFTVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348
+ R F +GP + F LQG+ + VY R F Y+ D+V G
Sbjct: 191 EVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNG 247
Query: 349 CVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP 408
V +++ P NLGN + +++NL+ + ++ + +
Sbjct: 248 LVALMNS---------NVSSP-----VNLGNPEEHTILEFAQLIKNLVGSGSE--IQFLS 291
Query: 409 RNGDVPYT-HANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
D P ++ A G++P L GL K + ++
Sbjct: 292 EAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYF 330
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 3e-42
Identities = 70/369 (18%), Positives = 128/369 (34%), Gaps = 58/369 (15%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
M VL+ G GF+G+H + L + V GLD A + L VEG
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG--------SDAISRFLNHPHFHFVEG 52
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D++ + V VL L A A +NP + + ++ C +
Sbjct: 53 DISI-HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKR 111
Query: 238 PSIVWASSSSVYGLNTQVPFSESHR------TDQPASLYAATKKAGEEIAHTYNHIYGLA 291
I++ S+S VYG+ + F E H ++P +Y+ +K+ + + Y GL
Sbjct: 112 --IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQ 169
Query: 292 LTGLRFFTVYGPWGRPDMAYFF----------FTKDILQGKTIDVYKTQDDREVARDFTY 341
T R F GP R D ++++G I + D + R FT
Sbjct: 170 FTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTD 224
Query: 342 IDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSP-VPVGRLVSILENLLNTKA 400
I D ++ ++ AG + N+GN + L +L
Sbjct: 225 IRDGIEALYRIIENAGNRCDGE----------IINIGNPENEASIEELGEMLLASFEKHP 274
Query: 401 K-KHVIRMPRNGDVPYTHA-------------NVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
H V + ++ A++ ++P D+ + + + ++
Sbjct: 275 LRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFF 334
Query: 447 VSYYGIQPR 455
+ + +
Sbjct: 335 LRTVDLTDK 343
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 4e-42
Identities = 100/356 (28%), Positives = 162/356 (45%), Gaps = 57/356 (16%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
M VLVTG +G++GSH + L + G V+ LDN NS L ++L KH F+ EG
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS-VLPVI-ERLGGKHPTFV-EG 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 58 DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAH-TYNHIYGLALTGLR 296
+ +++SS++VYG N ++P+ ES T P S Y +K E+I ++ LR
Sbjct: 118 -NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLR 176
Query: 297 FFTVYG----------PWGRPD--MAYFFFTKDILQ---GK----TI--DVYKTQDDREV 335
+F G P G P+ M Y I Q G+ I + Y T+D V
Sbjct: 177 YFNPVGAHPSGDMGEDPQGIPNNLMPY------IAQVAVGRRDSLAIFGNDYPTEDGTGV 230
Query: 336 ARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENL 395
RD+ ++ D+ G V A++ G + +YNLG G S+L+ +
Sbjct: 231 -RDYIHVMDLADGHVVAMEKLANKPG----------VHIYNLGA------GVGNSVLD-V 272
Query: 396 LNT--KA--KK--HVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
+N KA K + R GD+P A+ S A ++ ++ T L + W
Sbjct: 273 VNAFSKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHW 328
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 147 bits (373), Expect = 2e-40
Identities = 97/356 (27%), Positives = 153/356 (42%), Gaps = 58/356 (16%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEG 177
T+LVTG AG++GSH ++ L G V+ DN NS + ++ R +K+ K F E
Sbjct: 6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKRE-AIARI-EKITGKTPAFH-ET 62
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D++D L ++FD P T +H AA V ++ P Y +N+ ++LL V + +
Sbjct: 63 DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK 122
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAH-TYNHIYGLALTGLR 296
IV++SS++VYG+ + P E+ + Y TK E+I + LR
Sbjct: 123 -RIVFSSSATVYGVPERSPIDETFPL-SATNPYGQTKLMAEQILRDVEAADPSWRVATLR 180
Query: 297 FFTVYG----------PWGRPD--MAYFFFTKDILQ---GK----TI--DVYKTQDDREV 335
+F G P G P+ M Y + Q GK + Y T D V
Sbjct: 181 YFNPVGAHESGLIGEDPAGIPNNLMPY------VAQVAVGKLEKLRVFGSDYPTPDGTGV 234
Query: 336 ARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENL 395
RD+ ++ D+ +G + ALD + NLG GR S+LE +
Sbjct: 235 -RDYIHVVDLARGHIAALDALERRDA----------SLTVNLGT------GRGYSVLE-V 276
Query: 396 LNT------KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKW 445
+ +A + + R GDV +AN + A + G+K DL +W
Sbjct: 277 VRAFEKASGRAVPYELVARRPGDVAECYANPAAAAETIGWKAERDLERMCADHWRW 332
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 2e-40
Identities = 71/386 (18%), Positives = 130/386 (33%), Gaps = 59/386 (15%)
Query: 108 RHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL 167
+ P VL+ G GF+G H S + + D + + + R L
Sbjct: 14 AQTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQT--------DRLGDL 65
Query: 168 QKHQVF-IVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVN 226
KH+ EGD+ + V +L L A A ++ P + +
Sbjct: 66 VKHERMHFFEGDITINKEWVEYH-VKKCDVILPLVAIATPATYVKQPLRVFELDFEANLP 124
Query: 227 LLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESH------RTDQPASLYAATKKAGEEI 280
++ +V+ S+S VYG+ F ++P +YA +K+ + +
Sbjct: 125 IVRSAVKYGKH--LVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMDRV 182
Query: 281 AHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF----------FTKDILQGKTIDVYKTQ 330
Y + GL T R F GP D Y F I++G+ I +
Sbjct: 183 IWGY-GMEGLNFTLFRPFNWIGP--GLDSIYTPKEGSSRVVTQFLGHIVRGENISLV--- 236
Query: 331 DDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGN-TSPVPVGRLV 389
D R FTY+DD + + ++ G A ++YN+GN + V L
Sbjct: 237 DGGSQKRAFTYVDDGISALMKIIEN----------SNGVATGKIYNIGNPNNNFSVRELA 286
Query: 390 SILENLLNTKAKKHVIR-----MPRNGDVPYTHA---------NVSLAYKDFGYKPTTDL 435
+ + L + + Y + + ++ G+ P
Sbjct: 287 NKMLELAAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTF 346
Query: 436 AAGLRKFVKWYVSYYGIQPRVKKENG 461
LR+ + Y + + +++G
Sbjct: 347 DDALRQIFEAYRGHVADARALVEQHG 372
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 8e-39
Identities = 47/196 (23%), Positives = 72/196 (36%), Gaps = 21/196 (10%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+LVTGAAG +G L + + D S DP+ V+ DL
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADL--SPLDPAGPNEE----------CVQCDL 52
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
DA + + ++HL + + + + NI G NL E ++ QP
Sbjct: 53 ADANAVNAMVAGC--DGIVHLGGISVEK----PFEQILQGNIIGLYNLYEAARAHG-QPR 105
Query: 240 IVWASSSSVYGLNTQ-VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
IV+ASS+ G Q +P LY +K GE +A Y +G +R
Sbjct: 106 IVFASSNHTIGYYPQTERLGPDVPA-RPDGLYGVSKCFGENLARMYFDKFGQETALVRIG 164
Query: 299 TVYGPWGRPDMAYFFF 314
+ M +F
Sbjct: 165 SCTPEPNNYRMLSTWF 180
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-38
Identities = 104/362 (28%), Positives = 160/362 (44%), Gaps = 61/362 (16%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDP-----SLKRARQKLLQKHQ 171
VLVTG AG++GSH L L + G + +DNF N++ SL+R Q+L +
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRV-QELTGRSV 60
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
F E D+ D L +LF F V+H A V ++Q P Y N+ G + LLE+
Sbjct: 61 EFE-EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIM 119
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAH-TYNHIYGL 290
K+ + ++V++SS++VYG +P E+H T + Y +K EE+
Sbjct: 120 KAHGVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTW 178
Query: 291 ALTGLRFFTVYG----------PWGRPD--MAYFFFTKDILQ---GK----TI--DVYKT 329
LR+F G P G P+ M Y + Q G+ + + Y T
Sbjct: 179 NAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPY------VSQVAIGRREALNVFGNDYDT 232
Query: 330 QDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLV 389
+D V RD+ ++ D+ KG + AL + G R+YNLG G
Sbjct: 233 EDGTGV-RDYIHVVDLAKGHIAALRKLKEQCG----------CRIYNLGT------GTGY 275
Query: 390 SILENLLNT--KA--KK--HVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFV 443
S+L+ ++ KA KK + + R GDV +AN SLA ++ G+ L
Sbjct: 276 SVLQ-MVQAMEKASGKKIPYKVVARREGDVAACYANPSLAQEELGWTAALGLDRMCEDLW 334
Query: 444 KW 445
+W
Sbjct: 335 RW 336
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 5e-38
Identities = 81/344 (23%), Positives = 135/344 (39%), Gaps = 62/344 (18%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
++L+ G AG++GSH L G V+ +DN L+ + + + F GD
Sbjct: 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDN--------LQTGHEDAITEGAKF-YNGD 52
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D L +F V+H AA + V +M+ P Y +N+ G + LLEV
Sbjct: 53 LRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK-VD 111
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+++S+++ YG +E T P + Y TK A E++ H Y+ L R+F
Sbjct: 112 KFIFSSTAATYGEVDVDLITEETMT-NPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYF 170
Query: 299 TVYG--PWGR----PD-----MAYFFFTKDILQ---GK--TIDV----YKTQDDREVARD 338
V G P G + +LQ G+ I + Y T D + RD
Sbjct: 171 NVAGATPNGIIGEDHRPETHLIPL------VLQVALGQREKIMMFGDDYNTPDGTCI-RD 223
Query: 339 FTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
+ +++D+V L + + YNLGN G S+ E +++
Sbjct: 224 YIHVEDLVAAHFLGLK----------DLQNGGESDFYNLGN------GNGFSVKE-IVDA 266
Query: 399 KAK------KHVIRMPRNGDVPYTHANVSLAYKDFGYKPT-TDL 435
+ + R GD A+ A + G+ P ++
Sbjct: 267 VREVTNHEIPAEVAPRRAGDPARLVASSQKAKEKLGWDPRYVNV 310
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 2e-37
Identities = 54/366 (14%), Positives = 99/366 (27%), Gaps = 65/366 (17%)
Query: 112 TPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ 171
R + V GA G +G H + A++ G ++ + ++ + L +
Sbjct: 7 LSRPGAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIH---------RPSSQIQRLAYLE 57
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
++ D L + + V+ A + Q VAS + C
Sbjct: 58 PECRVAEMLDHAGLERALRGL--DGVIFSAGY--YPSRPRRWQEEVASALGQTNPFYAAC 113
Query: 232 KSVNPQPSIVWASSSSVYGLNT-QVPFSESHRTD---QPASLYAATKKAGEEIAHTYNHI 287
I++ S+ + +P E D S Y K A +E A
Sbjct: 114 LQARVPR-ILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQAR- 171
Query: 288 YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347
GL + V G I G+ R+ + +
Sbjct: 172 NGLPVVIGIPGMVLGELDIGPTTGRVI-TAIGNGEMTHYVAG------QRNVIDAAEAGR 224
Query: 348 GCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV--- 404
G + AL+ G G Y L + + L + LL A + +
Sbjct: 225 GLLMALE-----RGRIG--------ERYLLTGH-NLEMADLTRRIAELLGQPAPQPMSMA 270
Query: 405 -----------IRMPRNGDVPYTHANVSLAY-----------KDFGYKPTTDLAAGLRKF 442
+ + ++ G+ TT L L +
Sbjct: 271 MARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLRA 330
Query: 443 VKWYVS 448
+ W+
Sbjct: 331 IDWFRD 336
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 2e-34
Identities = 97/373 (26%), Positives = 151/373 (40%), Gaps = 63/373 (16%)
Query: 109 HSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLL 167
+ VLVTG AG++GSH + L + G + DN NS YD S+ R + L
Sbjct: 2 TAQLQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYD-SVARL-EVLT 59
Query: 168 QKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNL 227
+ H F E DL D L K+F V+H A V + Q P Y +NI G V L
Sbjct: 60 KHHIPFY-EVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVL 118
Query: 228 LEVCKSVNPQPSIVWASSSSVYGLNT----QVPFSESHRTDQPASLYAATKKAGEEI--- 280
LE+ + N V++SS++VYG T +P E P + Y TK A E I
Sbjct: 119 LELMQQYNV-SKFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYGHTKYAIENILND 176
Query: 281 -AHTYNHIYGLALTGLRFFTVYG----------PWGRPD--MAYFFFTKDILQ---GK-- 322
++ + A+ LR+F G P G P+ + Y + Q G+
Sbjct: 177 LYNSDKKSWKFAI--LRYFNPIGAHPSGLIGEDPLGIPNNLLPY------MAQVAVGRRE 228
Query: 323 --TI--DVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLG 378
I D Y ++D + RD+ ++ D+ KG + AL + R +NLG
Sbjct: 229 KLYIFGDDYDSRDGTPI-RDYIHVVDLAKGHIAALQ---YLEAYNENEGL---CREWNLG 281
Query: 379 NTSPVPVGRLVSILENLLNT------KAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPT 432
+ G+ ++ E + + + + R GDV A A ++ ++
Sbjct: 282 S------GKGSTVFE-VYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTE 334
Query: 433 TDLAAGLRKFVKW 445
+ + KW
Sbjct: 335 LQVEDSCKDLWKW 347
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-33
Identities = 80/374 (21%), Positives = 132/374 (35%), Gaps = 72/374 (19%)
Query: 117 NGMTVLVTGAAGFVGSHCSLAL-KKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFI 174
+ M VLV G AG++GSH AL + V+ +D+ ++ R+ + +K Q
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 175 -------------VEGDLNDAPLLTKLF-DVVPFTHVLHLAAQAGVRYAMQNPQSYVASN 220
GD+ + L +F P V+H+ A V ++++P Y +N
Sbjct: 61 GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNN 120
Query: 221 IAGFVNLLEVCKSVNPQPSIVWASSSSVYG-------LNTQVPFSESHRTDQPASLYAAT 273
+ G + LL+ I+++SS++++G P + + P S Y +
Sbjct: 121 VVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNAEPIDINAKK-SPESPYGES 178
Query: 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYG--PWGR----PD----------MAY------ 311
K E + YG+ LR+F G G
Sbjct: 179 KLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAP 238
Query: 312 ---FFFTKDILQGKTIDV----YKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGG 364
+D K + + Y T D V RD+ ++ D+ + ALD K G
Sbjct: 239 DQRLTIHEDASTDKRMPIFGTDYPTPDGTCV-RDYVHVCDLASAHILALDYVEK----LG 293
Query: 365 KKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK------KHVIRMPRNGDVPYTHA 418
V+NLG R S+ E ++ K R GD Y A
Sbjct: 294 PNDKSKYFSVFNLGT------SRGYSVRE-VIEVARKTTGHPIPVRECGRREGDPAYLVA 346
Query: 419 NVSLAYKDFGYKPT 432
A + G+KP
Sbjct: 347 ASDKAREVLGWKPK 360
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 6e-30
Identities = 73/357 (20%), Positives = 132/357 (36%), Gaps = 51/357 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--DPSLKRARQKLLQKHQVFIVE 176
+L+TG GF+GS+ + +G ++ DN S +L L V
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNL-SRKGATDNLH----WLSSLGNFEFVH 56
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ + +T+L HLA Q + ++ NP N+ G +NLLE + N
Sbjct: 57 GDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNS 116
Query: 237 QPSIVWASSSSVYG----------------LNTQVPFSESHRTDQPASLYAATKKAGEEI 280
+I+++S++ VYG ++ + ES + D S Y +K A ++
Sbjct: 117 NCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD-FHSPYGCSKGAADQY 175
Query: 281 AHTYNHIYGLALTGLRFFTVYGPWGRPD--------MAYFFFTKDILQGKTIDVYKTQDD 332
Y I+GL R ++YG K + +
Sbjct: 176 MLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISG--NG 233
Query: 333 REVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLG--NTSPVPVGRLVS 390
++V RD + +D++ TA + K RG +N+G + + + L
Sbjct: 234 KQV-RDVLHAEDMIS----LYFTALA---NVSKIRG----NAFNIGGTIVNSLSLLELFK 281
Query: 391 ILENLLNTKAK-KHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
+LE+ N + ++ R D A++ + P G++K W
Sbjct: 282 LLEDYCNIDMRFTNL--PVRESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWT 336
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 7e-29
Identities = 73/346 (21%), Positives = 121/346 (34%), Gaps = 28/346 (8%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSL-KRARQKLLQKHQVFIV 175
G V VTG GF G SL L+ G V G + PSL + AR +
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSL-TAPTVPSLFETARVADGMQS----E 62
Query: 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
GD+ D L + V H+AAQ VR + P ++N+ G V LLE + V
Sbjct: 63 IGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG 122
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY------- 288
++V +S Y + + Y+ +K E + +Y + +
Sbjct: 123 GVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYG 182
Query: 289 --GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346
G A+ +R V G D A DIL+ + R + ++ + +
Sbjct: 183 QHGTAVATVRAGNVIGG---GDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPL 239
Query: 347 KGCVGALDTAGKSTGSGGKKRGPAQLRVYNLG--NTSPVPVGRLVSILENLLNTKAKKHV 404
G + + + G + +N G + PV +V + A +
Sbjct: 240 SGYL----LLAQKLYTDGAEYAEG----WNFGPNDADATPVKNIVEQMVKYWGEGASWQL 291
Query: 405 IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
+ Y + S A G+ P +L L V W+ ++
Sbjct: 292 DGNAHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWL 337
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 4e-22
Identities = 77/342 (22%), Positives = 134/342 (39%), Gaps = 48/342 (14%)
Query: 107 VRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL 166
+R S M L+TG AGFVG + + L ++ V G N P
Sbjct: 1 MRGSHHHHHHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLP--------- 51
Query: 167 LQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVN 226
V ++ D+ D+ + K+ + ++ HLAA++ V+ + N + ++N+ G ++
Sbjct: 52 ----NVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLH 107
Query: 227 LLEVCKSVNPQPSIVWASSSSVYGL--NTQVPFSESHRTDQPASLYAATKKAGEEIAHTY 284
+L+ + N I+ SS YG+ + P SE ++ +P S Y +K + +A Y
Sbjct: 108 VLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQL-RPMSPYGVSKASVGMLARQY 166
Query: 285 NHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR------EVARD 338
YG+ + R F GP G+ F T+D + + Q+ E RD
Sbjct: 167 VKAYGMDIIHTRTFNHIGP-GQSLG---FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRD 222
Query: 339 FTYIDDVVKGCVGAL--DTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL 396
FT + D+V+ G VYN+ + + ++ +L +
Sbjct: 223 FTDVRDIVQAYWLLSQYGKTG---------------DVYNVCSGIGTRIQDVLDLLLAMA 267
Query: 397 NTKAKKHVIRMP---RNGDVPYTHANVSLAYKDFGYKPTTDL 435
N K P R +VP + G+KP L
Sbjct: 268 NV--KIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPL 307
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 3e-20
Identities = 51/279 (18%), Positives = 89/279 (31%), Gaps = 50/279 (17%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+ G G +G + L +G V G L+R+ Q + Q I D
Sbjct: 4 SKILIAGC-GDLGLELARRLTAQGHEVTG-----------LRRSAQPMPAGVQTLI--AD 49
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ L + + P +L A + + Y S + G N L + Q
Sbjct: 50 VTRPDTLASIVHLRP--EILVYCVAASEY----SDEHYRLSYVEGLRNTLSALEGAPLQ- 102
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+ + SS+ VYG + E E + + T LRF
Sbjct: 103 HVFFVSSTGVYGQEVEEWLDEDTPPI-AKDFSGKRMLEAEALLA------AYSSTILRFS 155
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358
+YGP GR M T + + + + + + DD +
Sbjct: 156 GIYGP-GRLRMIRQAQTPEQWPAR--NAW---------TNRIHRDDGAAFIAYLIQ---- 199
Query: 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN 397
++ R+Y + + P+PV L+ L +
Sbjct: 200 ------QRSHAVPERLYIVTDNQPLPVHDLLRWLADRQG 232
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 2e-19
Identities = 90/367 (24%), Positives = 146/367 (39%), Gaps = 84/367 (22%)
Query: 114 RRPNGMTVLVTGAAGFVGSH-CSLALKKRGDG-VLGLD------NFNSYYDPSLKRARQK 165
+ N M +LVTG AGF+GS+ L+ ++ D N N ++K +
Sbjct: 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLN-----NVKSIQDH 74
Query: 166 LLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFV 225
+ F V+G++ + LL + +++ AA++ V +++NP + +N+ G V
Sbjct: 75 ---PNYYF-VKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTV 130
Query: 226 NLLEVCKSVNPQPSIVWA------SSSSVYG-LNTQVPFSESHRTDQPASLYAATKKAGE 278
LLE+ K S+ VYG L F+E P S Y+++K + +
Sbjct: 131 TLLELVKK-------YPHIKLVQVSTDEVYGSLGKTGRFTEETPLA-PNSPYSSSKASAD 182
Query: 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF-------FTKDILQGKTIDVYKTQD 331
IA Y Y L + R YGP Y + + L+GK + +Y D
Sbjct: 183 MIALAYYKTYQLPVIVTRCSNNYGP-------YQYPEKLIPLMVTNALEGKKLPLYG--D 233
Query: 332 DREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGR---- 387
V RD+ ++ D A+D G G VYN+G G
Sbjct: 234 GLNV-RDWLHVTDHCS----AIDVV-LHKGRVG--------EVYNIG-------GNNEKT 272
Query: 388 ---LVSILENLLNTKAK--KHVIRMPRNG-DVPYTHA-NVSLAYKDFGYKPTTDLAAGLR 440
+V + LL K ++V R G D Y A N +F ++P GL+
Sbjct: 273 NVEVVEQIITLLGKTKKDIEYV--TDRLGHDRRY--AINAEKMKNEFDWEPKYTFEQGLQ 328
Query: 441 KFVKWYV 447
+ V+WY
Sbjct: 329 ETVQWYE 335
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 3e-18
Identities = 73/388 (18%), Positives = 133/388 (34%), Gaps = 76/388 (19%)
Query: 109 HSATPRRPNGMTVLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL 167
VL+ G GF+G+H L++ V GLD + A + L
Sbjct: 306 SQPACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSD--------AISRFL 357
Query: 168 QKHQVFIVEGDL--NDAPL--LTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAG 223
VEGD+ + + K DV VL L A A +NP +
Sbjct: 358 NHPHFHFVEGDISIHSEWIEYHVKKCDV-----VLPLVAIATPIEYTRNPLRVFELDFEE 412
Query: 224 FVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPASLYAATKKAG 277
+ ++ C + I++ S+S VYG+ + F E H ++P +Y+ +K+
Sbjct: 413 NLRIIRYCVKYRKR--IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLL 470
Query: 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF----------FTKDILQGKTIDVY 327
+ + Y GL T R F GP R D ++++G I +
Sbjct: 471 DRVIWAYGEKEGLQFTLFRPFNWMGP--RLDNLNAARIGSSRAITQLILNLVEGSPIKLI 528
Query: 328 KTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGR 387
D + R FT I D ++ ++ + N+GN P
Sbjct: 529 ---DGGKQKRCFTDIRDGIEALYRIIE----------NAGNRCDGEIINIGN----PENE 571
Query: 388 LVSILE--NLLNTKAKKHVIRMPRNGDVPYTHA------------------NVSLAYKDF 427
SI E +L +KH +R + ++ A++
Sbjct: 572 -ASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCL 630
Query: 428 GYKPTTDLAAGLRKFVKWYVSYYGIQPR 455
++P D+ + + + +++ + +
Sbjct: 631 DWEPKIDMQETIDETLDFFLRTVDLTDK 658
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 6e-18
Identities = 88/385 (22%), Positives = 149/385 (38%), Gaps = 108/385 (28%)
Query: 119 MTVLVTGAAGFVGSH-CSLALKKRGDGVLGLD------NFNSYYDPSLKRARQKLLQKHQ 171
M +L+TG AGF+GS +K D V+ +D N SL +
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLE-----SLSDISES---NRY 52
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
F D+ D+ +T++F+ V+HLAA++ V ++ P +++ +NI G LLEV
Sbjct: 53 NF-EHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVA 111
Query: 232 KSVNPQPSIVWASSSS---------------VYG----------LNTQVPFSESHRTDQP 266
+ W++ VYG T F+E+ P
Sbjct: 112 RK-------YWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYA-P 163
Query: 267 ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTV-------YGPWGRPDMAYFF------ 313
+S Y+A+K + + + + YGL T+ YGP Y F
Sbjct: 164 SSPYSASKASSDHLVRAWRRTYGLP-------TIVTNCSNNYGP-------YHFPEKLIP 209
Query: 314 -FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQL 372
+ L+GK + +Y ++ RD+ Y++D + AL + G G
Sbjct: 210 LVILNALEGKPLPIYG--KGDQI-RDWLYVEDHAR----ALHMV-VTEGKAG-------- 253
Query: 373 RVYNLGNTSPVP----VGRLVSILENLLNTKAK-----KHVIRMPRNG-DVPYTHA-NVS 421
YN+G + V + +L+ ++ +V R G D Y A +
Sbjct: 254 ETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYV--ADRPGHDRRY--AIDAG 309
Query: 422 LAYKDFGYKPTTDLAAGLRKFVKWY 446
++ G+KP +G+RK V+WY
Sbjct: 310 KISRELGWKPLETFESGIRKTVEWY 334
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 89/357 (24%), Positives = 148/357 (41%), Gaps = 72/357 (20%)
Query: 117 NGMTVLVTGAAGFVGSH-CSLALKKRGDG-VLGLD------NFNSYYDPSLKRARQKLLQ 168
+ M +LVTG GF+GS+ L+K D V+ +D N +LK
Sbjct: 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPA-----NLKDLEDD--- 53
Query: 169 KHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLL 228
F V+GD+ D L+ +L V+HLAA++ V ++ +P+ ++ SN+ G LL
Sbjct: 54 PRYTF-VKGDVADYELVKELVR--KVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLL 110
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY 288
E + NP+ V S+ VYG + F+E+ R P+S Y+ATK A + + + Y
Sbjct: 111 ESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLM-PSSPYSATKAASDMLVLGWTRTY 169
Query: 289 GLALTGLRFFTVYGPWGRPDMAYFF-------FTKDILQGKTIDVYKTQDDREVARDFTY 341
L + R YGP Y F G I +Y + V RD+ Y
Sbjct: 170 NLNASITRCTNNYGP-------YQFPEKLIPKTIIRASLGLKIPIYG--TGKNV-RDWLY 219
Query: 342 IDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGR-------LVSILEN 394
++D V+ A++ G +YN+ +V I+
Sbjct: 220 VEDHVR----AIELV-LLKGESR--------EIYNIS-------AGEEKTNLEVVKIILR 259
Query: 395 LLNTKAK--KHVIRMPRNG-DVPYTHA-NVSLAYKDFGYKPTTDLAAGLRKFVKWYV 447
L+ + + V R G D+ Y + + +D ++P G++K + WY+
Sbjct: 260 LMGKGEELIELV--EDRPGHDLRY--SLDSWKITRDLKWRPKYTFDEGIKKTIDWYL 312
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 8e-17
Identities = 47/306 (15%), Positives = 85/306 (27%), Gaps = 57/306 (18%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDG-----VLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
L+ G G +G+ + L V G+ R R + + +
Sbjct: 3 VALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVAR----------RTRPAWHEDNPINY 52
Query: 175 VEGDLND-APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS 233
V+ D++D KL + THV ++ Q +N F N+L+
Sbjct: 53 VQCDISDPDDSQAKLSPLTDVTHVFYVT-----WANRSTEQENCEANSKMFRNVLDAVIP 107
Query: 234 VNPQPS-IVWASSSSVY---------GLNTQVPFSESH-RTDQPASLYAATKKAGEEIAH 282
P I + Y + P++E R Y EE+
Sbjct: 108 NCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEK 167
Query: 283 TYNHIYGLALTGLRFFTVYGPWGRPDM-------AYFFFTKDILQGKTIDVYKTQDDREV 335
GL + R ++G M Y K +GK + + +
Sbjct: 168 K----EGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKH--EGKVLRFTGCKAAWDG 221
Query: 336 ARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENL 395
D + D + + + A A+ +N+ N +L
Sbjct: 222 YSDCSDADLIAEHHIWAAVDPY------------AKNEAFNVSNGDVFKWKHFWKVLAEQ 269
Query: 396 LNTKAK 401
+
Sbjct: 270 FGVECG 275
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 86/360 (23%), Positives = 139/360 (38%), Gaps = 81/360 (22%)
Query: 119 MTVLVTGAAGFVGSH------CSLALKKRGDGVLGLD------NFNSYYDPSLKRARQKL 166
M +LVTG AGF+GSH D V+ LD N + +
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAP---------V 51
Query: 167 LQKHQVFIVEGDLNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAG 223
++ V GD+ DA LL + D + +H AA++ V ++ + +N+ G
Sbjct: 52 DADPRLRFVHGDIRDAGLLARELRGVDAI-----VHFAAESHVDRSIAGASVFTETNVQG 106
Query: 224 FVNLLEVCKSVNPQPSIVWA------SSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277
LL+ S++ VYG ++ES + P S YAA+K
Sbjct: 107 TQTLLQCAVDA-------GVGRVVHVSTNQVYGSIDSGSWTESSPLE-PNSPYAASKAGS 158
Query: 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF-------FTKDILQGKTIDVYKTQ 330
+ +A Y+ YGL + R YGP Y F ++L G T+ +Y
Sbjct: 159 DLVARAYHRTYGLDVRITRCCNNYGP-------YQHPEKLIPLFVTNLLDGGTLPLYG-- 209
Query: 331 DDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVS 390
D V R++ + DD + + + G G +Y++G + L
Sbjct: 210 DGANV-REWVHTDDHCR----GIALV-LAGGRAG--------EIYHIGGGLELTNRELTG 255
Query: 391 ILENLLNTKAK--KHVIRMPRNG-DVPYTHA-NVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
IL + L + V R G D+ Y + + ++ GY+P A GL + V+WY
Sbjct: 256 ILLDSLGADWSSVRKV--ADRKGHDLRY--SLDGGKIERELGYRPQVSFADGLARTVRWY 311
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 3e-16
Identities = 30/238 (12%), Positives = 68/238 (28%), Gaps = 36/238 (15%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEG 177
+++ GA+GFVGS RG V + R +K+ ++ + + +
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVV-----------RHPEKIKIENEHLKVKKA 53
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D++ + ++ V+ N I ++ +++ K
Sbjct: 54 DVSSLDEVCEVCKGA--DAVISAFN------PGWNNPDIYDETIKVYLTIIDGVKKAGVN 105
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
+ + + + +S + P ++ K GE + +
Sbjct: 106 R-FLMVGGAGSLFIAPGLRLMDS--GEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSP 162
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355
P R T GK + V ++D + L+
Sbjct: 163 AADMRPGVR--------TGRYRLGKDDMIVD-----IVGNSHISVEDYAAAMIDELEH 207
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 7e-14
Identities = 81/376 (21%), Positives = 135/376 (35%), Gaps = 106/376 (28%)
Query: 119 MTVLVTGAAGFVGSH-CSLALKKRGDG-VLGLD------NFNSYYDPSLKRARQKLLQKH 170
++VTG AGF+GS+ D V LD N + +
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEA----------ILGD 54
Query: 171 QVFIVEGDLNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNL 227
+V +V GD+ DA L+ KL D ++H AA++ ++ +P ++ +N G L
Sbjct: 55 RVELVVGDIADAELVDKLAAKADA-----IVHYAAESHNDNSLNDPSPFIHTNFIGTYTL 109
Query: 228 LEVCKSVNPQPSIVWA-----SSSSVYG-LNTQVP-----------FSESHRTDQPASLY 270
LE + S+ VYG L + F+ + P+S Y
Sbjct: 110 LEAARK-------YDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN-PSSPY 161
Query: 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDI-------LQGKT 323
++TK A + I + +G+ T YGP Y K I L G
Sbjct: 162 SSTKAASDLIVKAWVRSFGVKATISNCSNNYGP-------YQHIEKFIPRQITNILAGIK 214
Query: 324 IDVYKTQDDREVARDFTYIDD--------VVKGCVGALDTAGKSTGSGGKKRGPAQLRVY 375
+Y + + V RD+ + +D + KG +G Y
Sbjct: 215 PKLYG--EGKNV-RDWIHTNDHSTGVWAILTKGRMG---------------------ETY 250
Query: 376 NLGNTSPVPVGRLVSILENLLNTKAK--KHVIRMPRNG-DVPYTHA-NVSLAYKDFGYKP 431
+G ++ ++ + HV R G D+ Y A + S + G+ P
Sbjct: 251 LIGADGEKNNKEVLELILEKMGQPKDAYDHV--TDRAGHDLRY--AIDASKLRDELGWTP 306
Query: 432 T-TDLAAGLRKFVKWY 446
TD + GL + ++WY
Sbjct: 307 QFTDFSEGLEETIQWY 322
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 3e-13
Identities = 50/331 (15%), Positives = 97/331 (29%), Gaps = 62/331 (18%)
Query: 110 SATPRRPNGMTVLVTGAAGFVGSH--------CSLALK-------KRGDGVLG--LDNFN 152
+ P TVL+TGA GF+G + + + + + F+
Sbjct: 65 NLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFD 124
Query: 153 SYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL------LTKLFDVVPFTHVLHLAAQAGV 206
S L+ ++ + + +V GD ++ L +L + V ++ AA V
Sbjct: 125 SGDPELLRHFKELAADR--LEVVAGDKSEPDLGLDQPMWRRLAETV--DLIVDSAAM--V 178
Query: 207 RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266
N+AG L+ + + +P + S++ V F+E
Sbjct: 179 NAFP--YHELFGPNVAGTAELIRIALTTKLKP-FTYVSTADVGAAIEPSAFTEDADIRVI 235
Query: 267 ASL----------YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGP------WGRPDMA 310
+ Y +K AGE + N + L + R + D
Sbjct: 236 SPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWV 295
Query: 311 YFFFTKDILQGKTIDVYKTQDDREVAR----DFTYIDDVVKGCVGALDTAGKSTGSGGKK 366
+ G + D + D + V + S+ +G
Sbjct: 296 TRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGF-- 353
Query: 367 RGPAQLRVYNLGN--TSPVPVGRLVSILENL 395
Y++ N + + V L
Sbjct: 354 ------ATYHVMNPHDDGIGLDEYVDWLIEA 378
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 2e-11
Identities = 36/238 (15%), Positives = 77/238 (32%), Gaps = 39/238 (16%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH-QVFIVEG 177
M + + GA G GS K RG V + R K+ Q H + I++
Sbjct: 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIV-----------RNAGKITQTHKDINILQK 49
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D + L+ Q V A ++ +L+ V
Sbjct: 50 DIFDLT-------------LSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTV-S 95
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
P ++ ++ ++ + + A Y + +++ H +H + T +
Sbjct: 96 PRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISP 155
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355
++ P R T D GK ++ + + ++ +D + ++
Sbjct: 156 SAMFEPGER--------TGDYQIGKDHLLFGSDGNSFISM-----EDYAIAVLDEIER 200
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 6e-10
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 15/198 (7%)
Query: 107 VRHSATPRRPNGM--TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRAR- 163
+R S M + LVTG G G++ + L ++G V GL S S R R
Sbjct: 1 MRGSHHHHHHGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS----SDTRWRL 56
Query: 164 QKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAG 223
++L + + +GD+ DA + + V +LAAQ+ V + P + + G
Sbjct: 57 RELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLG 116
Query: 224 FVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSES---HRTDQPASLYAATKKAGEEI 280
+LLE + +P+ AS+S ++GL E+ + P S Y K G I
Sbjct: 117 VTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFY----PRSPYGVAKLYGHWI 172
Query: 281 AHTYNHIYGL-ALTGLRF 297
Y +GL A +G+ F
Sbjct: 173 TVNYRESFGLHASSGILF 190
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Length = 345 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 11/180 (6%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRAR-QKLLQKHQVFIVEGDLN 180
L+TG G G++ + L ++G V G D + R ++L ++ V I+ DL
Sbjct: 7 LITGIRGQDGAYLAKLLLEKGYEVYGADRRSG----EFASWRLKELGIENDVKIIHMDLL 62
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA-SNIAGFVNLLEVCKSVNPQPS 239
+ + + + V V +LAAQ+ V + + P A + G + +LE ++V P
Sbjct: 63 EFSNIIRTIEKVQPDEVYNLAAQSFVGVSFEQPI-LTAEVDAIGVLRILEALRTVKPDTK 121
Query: 240 IVWASSSSVYGLNTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYNHIYGL-ALTGLRF 297
AS+S ++G ++P +E T P S YA K G I Y Y + A +G+ F
Sbjct: 122 FYQASTSEMFGKVQEIPQTEK--TPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILF 179
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 2e-08
Identities = 24/190 (12%), Positives = 49/190 (25%), Gaps = 25/190 (13%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M + V GA G GS ++RG VL + R QK + +
Sbjct: 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVV-----------RDPQKAADRLGATVATLV 49
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQS--YVASNIAGFVNLLEVCKSVNP 236
L L + V A+ P ++ +L+ + ++ +
Sbjct: 50 KEPLVLTEA-----------DLDSVDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDT 98
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
++ S+S+ P + + + G+
Sbjct: 99 -LAVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGIS 157
Query: 297 FFTVYGPWGR 306
+
Sbjct: 158 PSEAFPSGPA 167
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 51/258 (19%), Positives = 92/258 (35%), Gaps = 36/258 (13%)
Query: 111 ATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH 170
AT T V G GFV S L ++G V + DP ++ LL+
Sbjct: 2 ATQHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNT-----TVRDPDNQKKVSHLLELQ 56
Query: 171 ---QVFIVEGDLNDAPLLTKLFD--VVPFTHVLHLAAQAGVRYAMQNPQSYV---ASNIA 222
+ I DL D F+ + V H+A V +A ++P++ + A I
Sbjct: 57 ELGDLKIFRADLTDE----LSFEAPIAGCDFVFHVA--TPVHFASEDPENDMIKPA--IQ 108
Query: 223 GFVNLLEVCKSVNPQPSIVWASS-SSVYGLNTQ---VPFSESHRTD--------QPASLY 270
G VN+++ C ++ SS ++V + E + TD P Y
Sbjct: 109 GVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGY 168
Query: 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKT 329
A+K E+ A + + L + + G D+ + ++ G +
Sbjct: 169 PASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGM 228
Query: 330 QDDREVARDFTYID--DV 345
+ + ++ + DV
Sbjct: 229 KGMQMLSGSVSIAHVEDV 246
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-07
Identities = 37/254 (14%), Positives = 76/254 (29%), Gaps = 59/254 (23%)
Query: 117 NGMT--VLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVF 173
N M + + GAAG + + L + R +++ +V
Sbjct: 2 NAMYXYITILGAAGQIAQXLTATLLTYTDMHITLYGR-----QLK-TRIPPEIIDHERVT 55
Query: 174 IVEGDLNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV 230
++EG + L + +VV + + A + A+ NI + +
Sbjct: 56 VIEGSFQNPGXLEQAVTNAEVVFVGAMESGSDMASIVKALS------RXNIRRVIGV--- 106
Query: 231 CKSVNPQPSIVWASSSSVYGLNTQVP-FSESHRTDQPASLYAATKKAGEEIAHTYNHIYG 289
S+ GL+ + P E D Y ++ +
Sbjct: 107 ----------------SMAGLSGEFPVALEKWTFDNLPISYVQGERQARNV--------- 141
Query: 290 LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349
L + L + + R + + + + I +D +V+R + VVK
Sbjct: 142 LRESNLNYTIL-----RL--TWLYNDPEXTDYELIPEGAQFNDAQVSR-----EAVVKAI 189
Query: 350 VGALDTAGKSTGSG 363
L A ++
Sbjct: 190 FDILHAADETPFHR 203
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 33/170 (19%), Positives = 58/170 (34%), Gaps = 24/170 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M L+TGA+G +G S L +R + + ++ L D
Sbjct: 1 MRTLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKL------------------D 42
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D P L +++ AA V + N +++ K ++
Sbjct: 43 LTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSY- 101
Query: 239 SIVWASSSSVY-GLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI 287
IV S+ V+ G + E + P + Y +K GE A + +
Sbjct: 102 -IVHISTDYVFDGEKG--NYKEEDIPN-PINYYGLSKLLGETFALQDDSL 147
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 42/270 (15%), Positives = 81/270 (30%), Gaps = 63/270 (23%)
Query: 99 GGAEWEKQVRHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS 158
G + GM VLV GA G V + LK +G + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAM---------- 51
Query: 159 LKRAR-----QKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP 213
R +L ++ IV +L + + F + V+ A
Sbjct: 52 ---VRNEEQGPELRERGASDIVVANLEED--FSHAFASI--DAVVFAAGSGPHT----GA 100
Query: 214 QSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273
+ ++ G + ++ + + + SS + + Y
Sbjct: 101 DKTILIDLWGAIKTIQEAEKRGIKR-FIMVSSVGTV---------DPDQGPMNMRHYLVA 150
Query: 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK-TIDVYKTQDD 332
K+ ++ L + L +T+ P + + GK T+ + ++
Sbjct: 151 KRLADDE---------LKRSSLD-YTIVRPGP--------LSNEESTGKVTVSPHFSEIT 192
Query: 333 REVARDFTYIDDVVKGCVGALD---TAGKS 359
R + R DV K +D T GK+
Sbjct: 193 RSITR-----HDVAKVIAELVDQQHTIGKT 217
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 3e-07
Identities = 42/294 (14%), Positives = 86/294 (29%), Gaps = 63/294 (21%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+L+ GA G++G H + A G L ++ S K + + IV G +
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 180 NDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
+D L + DVV ++ ++ Q VN+++ K V
Sbjct: 66 DDHASLVEAVKNVDVV-------ISTVGSLQIESQ-------------VNIIKAIKEVGT 105
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
S +G + ++ +PA K I +
Sbjct: 106 VKRFF----PSEFGNDV-----DNVHAVEPAKSVFEVKAK------VRRAIEAEGIPYTY 150
Query: 297 FFTVYGPWGRPDMAYFF-----FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351
+ + YF + + D F +D+ +
Sbjct: 151 VSS--NCF----AGYFLRSLAQAGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTIK 201
Query: 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI 405
A+D + +Y + + + LV++ E ++ +K +
Sbjct: 202 AVDDPRTLNKT-----------LYLRLPANTLSLNELVALWEKKIDKTLEKAYV 244
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 31/169 (18%), Positives = 55/169 (32%), Gaps = 37/169 (21%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
VLVTGA G +G ++ +G + +++ +
Sbjct: 3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPK------FEQV-----------N 45
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L D+ + + ++H AA+ P + N+ NL + +V
Sbjct: 46 LLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVG--- 102
Query: 239 SIVWASSSSVY--------GLNTQVPFSESHRTDQPASLYAATKKAGEE 279
+ +Y G N P+ E P +LY TK GE+
Sbjct: 103 ------AFLIYISSDYVFDGTNP--PYREEDIPA-PLNLYGKTKLDGEK 142
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 5e-07
Identities = 37/237 (15%), Positives = 66/237 (27%), Gaps = 35/237 (14%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
VL+ G G++G A G L + K ++ ++E L
Sbjct: 6 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNID-KVQMLLYFKQLGAKLIEASL 64
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
+D L V V+ A GV Q + L+E K
Sbjct: 65 DDHQRLVDALKQV---DVVISALAGGVLSHHILEQ----------LKLVEAIKEAGNIKR 111
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE--IAHTYNHIYGLALTGLRF 297
+ S +G++ + ++A E I +TY F
Sbjct: 112 FLP----SEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNM-------F 160
Query: 298 FTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354
+ + + + +Y D V + DDV + ++D
Sbjct: 161 AGYFAGSLAQLDGHMMPPR-----DKVLIY---GDGNVKGIWVDEDDVGTYTIKSID 209
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Length = 372 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 54/191 (28%), Positives = 86/191 (45%), Gaps = 26/191 (13%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLD----NFNS------YYDPSLKRARQKLLQKHQ 171
L+TG G GS+ + L ++G V G+ +FN+ Y DP +
Sbjct: 5 LITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPK-------- 56
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA-SNIAGFVNLLEV 230
+ GDL+D LT++ V V +L A + V + ++P+ Y A + G + LLE
Sbjct: 57 FHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPE-YTADVDAMGTLRLLEA 115
Query: 231 CKSVNPQPSIVW--ASSSSVYGLNTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYNHI 287
+ + + + AS+S +YGL ++P E+ T P S YA K I Y
Sbjct: 116 IRFLGLEKKTRFYQASTSELYGLVQEIPQKET--TPFYPRSPYAVAKLYAYWITVNYRES 173
Query: 288 YGL-ALTGLRF 297
YG+ A G+ F
Sbjct: 174 YGMYACNGILF 184
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 375 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 25/191 (13%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLD----NFNS------YYDPSLKRARQKLLQKHQ 171
L+TG G GS+ + L ++G V G+ +FN+ Y +P
Sbjct: 28 LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGN------- 80
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVA-SNIAGFVNLLEV 230
+ + GDL D+ L K+ + V T + +L AQ+ V+ + + Y A + G + LL+
Sbjct: 81 MKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAE-YTADVDGVGTLRLLDA 139
Query: 231 CKSVNPQPSIVW--ASSSSVYGLNTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYNHI 287
K+ S+ + AS+S +YG ++P E+ T P S Y A K I +
Sbjct: 140 VKTCGLINSVKFYQASTSELYGKVQEIPQKET--TPFYPRSPYGAAKLYAYWIVVNFREA 197
Query: 288 YGL-ALTGLRF 297
Y L A+ G+ F
Sbjct: 198 YNLFAVNGILF 208
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 48/316 (15%), Positives = 95/316 (30%), Gaps = 74/316 (23%)
Query: 117 NGMT--VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKR--ARQKLLQKHQV 172
N MT +L G G+ S AL +G ++G R + + ++
Sbjct: 2 NAMTGTLLSFGH-GYTARVLSRALAPQGWRIIGT-----------SRNPDQMEAIRASGA 49
Query: 173 FIVEGDLNDAPLLTKLFDVVPFTHVL-HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
+ + L TH+L A +G + +A+ A
Sbjct: 50 EPLLWPGEEPSLDG-------VTHLLISTAPDSGGDPVLAALGDQIAARAA--------- 93
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
+ + S+++VYG + E+ P + + E+ + L
Sbjct: 94 ----QFRWVGYLSTTAVYGDHDGAWVDETTPLT-PTAARGRWRVMAEQQWQ---AVPNLP 145
Query: 292 LTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351
L R +YGP GR + +++D+ +
Sbjct: 146 LHVFRLAGIYGP-GR----------GPFSKLGKGGIRRIIKPGQVFSRIHVEDIAQVLAA 194
Query: 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 411
++ P VYN+ + PVP +++ L +P
Sbjct: 195 SMA-------------RPDPGAVYNVCDDEPVPPQDVIAYAAELQG---------LPLPP 232
Query: 412 DVPYTHANVSLAYKDF 427
V + A+++ + F
Sbjct: 233 AVDFDKADLTPMARSF 248
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 48/302 (15%), Positives = 87/302 (28%), Gaps = 78/302 (25%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+ G G +G H A K G+ L + +P K Q V ++EGD
Sbjct: 4 KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63
Query: 179 LNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
+ND L K D+V + A + Q V +++ K
Sbjct: 64 INDHETLVKAIKQVDIV-------ICAAGRLLIEDQ-------------VKIIKAIKEAG 103
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE------IAHTY---NH 286
S +GL+ + H +P K + + +TY +
Sbjct: 104 NVKKFF----PSEFGLDV-----DRHDAVEPVRQVFEEKASIRRVIEAEGVPYTYLCCHA 154
Query: 287 IYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346
G L L P + + D V + DV
Sbjct: 155 FTGYFLRNLAQLDATDPPRD----------------KVVIL---GDGNVKGAYVTEADVG 195
Query: 347 KGCVGALD---TAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH 403
+ A + T K+ V+ + + ++++ E + +K
Sbjct: 196 TFTIRAANDPNTLNKA--------------VHIRLPKNYLTQNEVIALWEKKIGKTLEKT 241
Query: 404 VI 405
+
Sbjct: 242 YV 243
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 45/252 (17%), Positives = 75/252 (29%), Gaps = 49/252 (19%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
TVLVTGA+G G LK+ D GL ++ A+ K + +
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGL----------VRSAQGKEKIGGEADVFI 54
Query: 177 GDLNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGF--------V 225
GD+ DA + F D + + G ++ +
Sbjct: 55 GDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQK 114
Query: 226 NLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYN 285
N ++ K + IV S + P + K+ E+
Sbjct: 115 NQIDAAKVAGVKH-IVVVGS-----MGGTNP--DHPLNKLGNGNILVWKRKAEQY----- 161
Query: 286 HIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345
LA +G +T+ G D + + + T+ V R DV
Sbjct: 162 ----LADSGTP-YTIIRAGGLLDKEGGVRELLVGKDDELLQTDTK---TVPR-----ADV 208
Query: 346 VKGCVGALDTAG 357
+ C+ AL
Sbjct: 209 AEVCIQALLFEE 220
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 38/255 (14%), Positives = 63/255 (24%), Gaps = 58/255 (22%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + GA G G + G V L D S R +V GD
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVL-----VRDSS----RLPSEGPRPAHVVVGD 54
Query: 179 LNDAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
+ A + K D V G R + G N++ K+
Sbjct: 55 VLQAADVDKTVAGQDAVIVL--------LGTRNDLSPTTVMS----EGARNIVAAMKAHG 102
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
+V +S+ + T+VP ++ L +GL
Sbjct: 103 V-DKVVACTSAFLLWDPTKVPPRLQA--------VTDDHIRMHKV---------LRESGL 144
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD- 354
+ + P + Y D D+ + L
Sbjct: 145 K-YVAV----MP--PHIG------DQPLTGAYTVTLDGRGPSRVISKHDLGHFMLRCLTT 191
Query: 355 --TAGKSTGSGGKKR 367
G ST + +
Sbjct: 192 DEYDGHSTYPSHQYQ 206
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Length = 381 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 62/193 (32%), Positives = 83/193 (43%), Gaps = 28/193 (14%)
Query: 122 LVTGAAGFVGSHCSLALKKRGDGVLGLD----NFNS------YYDPSLKRARQKLLQKHQ 171
L+TG G GS+ + L +G V GL NFN+ Y DP
Sbjct: 32 LITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKAL------- 84
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIA-GFVNLLEV 230
+ + DL DA L + DV+ V +LAAQ+ V + + P Y A +A G + LLE
Sbjct: 85 MKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPD-YTADVVATGALRLLEA 143
Query: 231 CKSVNPQPS----IVWASSSSVYGLNTQVPFSESHRTD-QPASLYAATKKAGEEIAHTYN 285
+S A SS ++G T P SE+ T P S YAA+K A Y
Sbjct: 144 VRSHTIDSGRTVKYYQAGSSEMFGS-TPPPQSET--TPFHPRSPYAASKCAAHWYTVNYR 200
Query: 286 HIYGL-ALTGLRF 297
YGL A G+ F
Sbjct: 201 EAYGLFACNGILF 213
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 Length = 292 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 6e-06
Identities = 39/171 (22%), Positives = 58/171 (33%), Gaps = 27/171 (15%)
Query: 109 HSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ 168
+ M +L+TGA G +G LK + V+ D Q L
Sbjct: 3 SDKIHHHHHHMKILITGANGQLGREIQKQLKGKNVEVIPTD-------------VQDL-- 47
Query: 169 KHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLL 228
D+ + + K F+ V++ AA V + N G NL
Sbjct: 48 ---------DITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLA 98
Query: 229 EVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE 279
SV + IV S+ V+ + P +E + P S Y TK GE
Sbjct: 99 AAAYSVGAE--IVQISTDYVFDGEAKEPITEFDEVN-PQSAYGKTKLEGEN 146
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 7e-06
Identities = 30/254 (11%), Positives = 66/254 (25%), Gaps = 53/254 (20%)
Query: 104 EKQVRHSATPRRPNGM-TVLVTGAAGFVGSH-CSLALKKRGDGVLGLDNFNSYYDPSLKR 161
M VL+ GA G + H + K+ P+
Sbjct: 8 HHHSSGRENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFAR-----QPA--- 59
Query: 162 ARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNI 221
+ I+ GD+ + L + V +
Sbjct: 60 -KIHKPYPTNSQIIMGDVLNHAALKQAMQGQ--DIVYANLTGEDLDIQAN---------- 106
Query: 222 AGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIA 281
+++ K+ + + +++ S +Y +VP + + +
Sbjct: 107 ----SVIAAMKACDVK-RLIFVLSLGIYD---EVPGKFVEWNNAVIGEPLKPFRRAADA- 157
Query: 282 HTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341
+ +GL +T+ RP + +DI+ + + V+R
Sbjct: 158 --------IEASGLE-YTIL----RPA---WLTDEDIIDYELTSRNEPFKGTIVSR---- 197
Query: 342 IDDVVKGCVGALDT 355
V +D
Sbjct: 198 -KSVAALITDIIDK 210
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 1e-05
Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 32/184 (17%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ----KHQV 172
TV VTGA+GF+GS + L +RG V + DP+ + + LL + +
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRA-----TVRDPTNVKKVKHLLDLPKAETHL 58
Query: 173 FIVEGDLNDAPLLTKLFD--VVPFTHVLHLAAQAGVRYAMQNPQSYV---ASNIAGFVNL 227
+ + DL D FD + T V H+A + + ++P++ V I G + +
Sbjct: 59 TLWKADLADE----GSFDEAIKGCTGVFHVA--TPMDFESKDPENEVIKPT--IEGMLGI 110
Query: 228 LEVCKSVNPQPSIVWASS-SSVYGLNTQVP-FSESHRTD--------QPASLYAATKKAG 277
++ C + +V+ SS +V Q+P + ES +D A +Y +K
Sbjct: 111 MKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLA 170
Query: 278 EEIA 281
E+ A
Sbjct: 171 EQAA 174
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 2e-05
Identities = 23/240 (9%), Positives = 60/240 (25%), Gaps = 44/240 (18%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+++ G G++G A + ++ + V I+EG++
Sbjct: 6 KIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEM 65
Query: 180 NDAPLLTKLFD----VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
+ + + V+ +++Q ++++ K+
Sbjct: 66 EEHEKMVSVLKQVDIVISALPFPMISSQ---------------------IHIINAIKAAG 104
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
+ S +G + + P K+ Y
Sbjct: 105 NIKRFL----PSDFGCEE-----DRIKPLPPFESVLEKKRIIRRAIEAAALPYTYVSANC 155
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355
F + + + + I +Y E Y +D+ K +
Sbjct: 156 -FGAYFVNYL------LHPSPHPNRNDDIVIY---GTGETKFVLNYEEDIAKYTIKVACD 205
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 35/183 (19%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLG------LDNFNSYYDPSLKRARQKLLQKHQVF 173
V VTG GF+GS +L + G V + + +L A +KL
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKL------H 56
Query: 174 IVEGDLNDAPLLTKLFD--VVPFTHVLHLAAQAGVRYAMQNPQSYV---ASNIAGFVNLL 228
DL++ F + + H A + + +A+ P+ V + G + +L
Sbjct: 57 FFNADLSNP----DSFAAAIEGCVGIFHTA--SPIDFAVSEPEEIVTKRT--VDGALGIL 108
Query: 229 EVCKSVNPQPSIVWASS-SSVYGLNTQ-VPFSESHRTD--------QPASLYAATKKAGE 278
+ C + ++ SS S+V ES +D YA +K E
Sbjct: 109 KACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAE 168
Query: 279 EIA 281
+
Sbjct: 169 KAV 171
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* Length = 321 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 8e-05
Identities = 72/359 (20%), Positives = 124/359 (34%), Gaps = 81/359 (22%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
V + G G VGS L++RGD L + R R +L +L
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQRGDVEL------------VLRTRDEL-----------NLL 42
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYA-MQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D+ + F V AA+ G A P ++ N+ N++ +
Sbjct: 43 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-K 101
Query: 240 IVWASSSSVYGLNTQVPFSESH-------RTDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
+++ SS +Y + P +ES T++P YA K AG ++ +YN Y
Sbjct: 102 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEP---YAIAKIAGIKLCESYNRQY---- 154
Query: 293 TGLRFFTV-----YGPWGR---------PDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338
G + +V YGP P + F + + V+ + R+
Sbjct: 155 -GRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPM---RE 210
Query: 339 FTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398
F ++DD+ + ++ A + + N+G G +I E L
Sbjct: 211 FLHVDDMAAASIHVMELAHEVWLENTQPMLS----HINVG------TGVDCTIRE--LAQ 258
Query: 399 KAKKHV-----IR----MPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 448
K V + P +G P +V+ G+ L AGL +W++
Sbjct: 259 TIAKVVGYKGRVVFDASKP-DG-TPRKLLDVTRL-HQLGWYHEISLEAGLASTYQWFLE 314
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} Length = 287 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 36/192 (18%), Positives = 68/192 (35%), Gaps = 39/192 (20%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
V++TGA G +G L + D ++ L D
Sbjct: 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFD-------------KKLL-----------D 41
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ + + ++ + ++H AA V A + N G N+ + V +
Sbjct: 42 ITNISQVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAK- 100
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE--IAHTYNHIYGLALTGLR 296
+V+ S+ V+ + + E H P ++Y A+K AGE+ + +R
Sbjct: 101 -LVYISTDYVFQGDRPEGYDEFHNPA-PINIYGASKYAGEQFVKELHNKYFI------VR 152
Query: 297 FFT--VYGPWGR 306
T +YG +G
Sbjct: 153 --TSWLYGKYGN 162
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 116 PNGMTVLVTGAAGFVGSHCSLALKKRG 142
P G VLVTGA GFV SH L + G
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEHG 35
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 39.4 bits (92), Expect = 4e-04
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 21/101 (20%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
+ V GA G +G + LK + V D+ A +L + V +
Sbjct: 6 WNICVVGA-GKIGQMIAALLKTSSNYSVTVADH---------DLAALAVLNRMGVATKQV 55
Query: 178 DLNDAPLLTKL---FDVV----PFTH---VLHLAAQAGVRY 208
D D L K FD V PF + A AG Y
Sbjct: 56 DAKDEAGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHY 96
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 23/165 (13%), Positives = 52/165 (31%), Gaps = 34/165 (20%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M + + G+ G VG +L + R +++ Q + V V D
Sbjct: 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYA-----------GARKVEQVPQYNNVKAVHFD 49
Query: 179 LN-DAPLLTKLF---DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
++ + K D + +G +S + ++ G V L++ +
Sbjct: 50 VDWTPEEMAKQLHGMDAIINV--------SGSG-----GKSLLKVDLYGAVKLMQAAEKA 96
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEE 279
+ I+ S+++ L + + Y K +
Sbjct: 97 EVKRFIL---LSTIFSLQPEKWIGAGFDALKD---YYIAKHFADL 135
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 14/107 (13%), Positives = 36/107 (33%), Gaps = 26/107 (24%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +++TGA G +G+H + + + + + +V + + D
Sbjct: 1 MNIMLTGATGHLGTHITNQAIANHIDHFHI----GVRNV----EKVPDDWRGKVSVRQLD 52
Query: 179 LNDAPLLTKLFD------------------VVPFTHVLHLAAQAGVR 207
+ + + F + ++++ A Q+GV
Sbjct: 53 YFNQESMVEAFKGMDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVA 99
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 4e-04
Identities = 27/144 (18%), Positives = 41/144 (28%), Gaps = 21/144 (14%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
T+ V GA G G+ G V + ++L V + +G L
Sbjct: 7 TIAVVGATGRQGASLIRVAAAVGHHVRAQVH-----SLK-GLIAEELQAIPNVTLFQGPL 60
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
+ L G A N S IA +L + K
Sbjct: 61 LNNVPLMD-------------TLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQH 107
Query: 240 IVWAS--SSSVYGLNTQVPFSESH 261
+++S S+YG VP
Sbjct: 108 YIYSSMPDHSLYGPWPAVPMWAPK 131
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 8e-04
Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 29/110 (26%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
++ VTGA G +G L K+ ++ + + + L V +
Sbjct: 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAI-----VRNV----EKASTLADQGVEVRH 51
Query: 177 GDLNDAPLLTKLFD------------------VVPFTHVLHLAAQAGVRY 208
GD N L K F +V +V+ A AGV++
Sbjct: 52 GDYNQPESLQKAFAGVSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKH 101
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 8e-04
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 108 RHSATPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL 148
++T + +TV +TG+ G VG + L+ G V+ L
Sbjct: 137 SRTSTLFDGSPLTVAITGSRGLVGRALTAQLQTGGHEVIQL 177
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 476 | |||
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 100.0 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.97 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.97 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.96 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.96 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.96 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.96 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.95 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.95 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.95 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.95 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.95 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.95 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.95 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.94 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.94 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.94 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.94 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.94 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.94 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.94 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.94 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.94 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.93 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.93 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.93 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.93 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.93 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.93 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.93 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.92 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.92 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.92 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.92 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.92 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.92 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.92 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.92 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.92 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.92 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.92 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.92 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.92 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.92 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.92 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.92 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.92 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.92 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.92 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.91 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.91 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.91 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.91 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.91 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.91 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.91 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.91 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.91 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.91 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.91 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.91 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.91 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.91 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.91 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.91 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.91 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.91 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.91 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.91 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.91 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.91 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.91 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.91 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.91 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.91 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.91 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.91 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.91 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.91 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.91 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.91 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.91 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.91 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.91 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.91 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.91 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.91 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.91 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.91 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.91 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.91 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.91 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.91 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.9 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.9 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.9 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.9 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.9 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.9 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.9 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.9 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.9 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.9 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.9 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.9 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.9 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.9 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.9 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.9 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.9 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.9 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.9 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.9 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.9 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.9 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.9 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.9 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.9 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.9 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.9 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.9 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.9 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.9 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.9 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.9 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.9 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.9 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.9 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.9 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.9 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.9 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.9 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.9 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.9 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.9 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.9 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.9 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.9 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.9 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.9 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.9 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.9 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.9 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.9 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.9 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.89 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.89 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.89 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.89 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.89 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.89 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.89 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.89 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.89 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.89 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.89 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.89 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.89 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.89 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.89 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.89 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.89 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.89 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.89 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.89 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.89 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.89 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.89 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.89 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.89 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.89 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.89 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.89 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.88 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.88 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.88 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.88 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.88 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.88 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.88 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.88 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.88 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.88 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.88 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.88 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.88 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.88 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.88 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.88 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.88 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.88 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.88 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.88 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.88 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.87 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.87 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.87 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.87 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.87 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.87 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.87 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.87 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.87 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.87 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.86 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.86 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.86 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.86 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.86 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.86 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.86 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.85 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.85 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.85 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.85 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.84 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.84 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.83 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.83 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.83 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.82 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.82 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.82 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.81 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.8 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.8 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.77 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.74 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.74 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.73 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.72 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.72 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.72 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.63 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.63 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.61 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.6 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.59 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.56 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.56 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.54 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.48 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.3 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.18 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.07 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.02 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.83 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.8 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.71 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.69 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.69 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.6 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.56 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.46 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.44 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.42 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.28 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.27 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.22 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.21 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.2 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.2 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.13 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.12 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.11 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.08 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.04 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.89 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.87 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.72 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.7 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.6 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.56 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.56 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.53 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.46 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.46 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.44 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.41 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.4 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.39 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.37 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.35 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.33 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.31 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.26 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.26 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.25 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.25 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.23 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.22 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.22 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.2 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.19 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.18 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.16 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.16 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.15 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 97.15 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.14 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.14 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.13 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.12 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.11 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.04 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.04 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.0 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 96.99 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.97 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 96.96 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 96.95 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.94 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.93 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.92 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 96.92 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.92 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.87 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.87 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.84 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.83 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.81 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.81 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.79 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.78 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.74 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.73 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.72 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 96.69 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.67 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.66 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.65 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 96.64 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.64 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.63 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.62 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.58 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.58 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 96.56 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.55 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 96.54 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.54 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.51 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.49 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.48 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.46 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.44 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.41 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.41 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.4 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.35 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.34 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.3 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.25 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.25 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.23 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.22 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.22 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.18 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.17 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.16 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.13 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.12 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.09 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 96.05 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.02 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.01 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.01 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.01 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 95.98 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 95.97 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.94 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.89 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.89 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.83 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.82 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.79 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 95.78 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.75 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 95.75 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.75 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.73 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.73 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.72 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 95.63 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.63 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 95.59 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 95.59 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 95.57 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 95.56 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.54 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.52 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.51 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 95.51 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 95.5 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.5 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 95.5 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.49 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.48 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 95.44 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 95.44 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 95.38 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.37 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 95.37 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.36 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.31 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.29 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.29 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 95.25 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 95.23 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 95.22 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.22 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 95.2 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.18 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 95.17 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.17 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.17 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 95.16 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 95.16 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.15 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.11 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.09 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.09 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.09 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.07 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 95.06 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 95.03 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 95.03 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 95.02 |
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-48 Score=388.79 Aligned_cols=317 Identities=31% Similarity=0.480 Sum_probs=272.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.++|+||||||+||||++|+++|+++|++|++++|.................. ..+++++.+|+.|.+++.++++++
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 101 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV- 101 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC-
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC-
Confidence 35689999999999999999999999999999999776443333222211100 158999999999999999999965
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
|+|||+||.........++...+++|+.++.+|+++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.+
T Consensus 102 -d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 178 (351)
T 3ruf_A 102 -DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ-SFTYAASSSTYGDHPALPKVEENIG-NPLSPYAVT 178 (351)
T ss_dssp -SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEecHHhcCCCCCCCCccCCCC-CCCChhHHH
Confidence 9999999987777788899999999999999999999999986 9999999999998888899999887 888999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
|.++|.+++.+.+++|+++++|||++||||+.... .++..++..+..++++.++ +++++.++|+|++|+|+++
T Consensus 179 K~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~Dva~a~ 255 (351)
T 3ruf_A 179 KYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYIN---GDGETSRDFCYIDNVIQMN 255 (351)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCCCcchhhHHHHHHHHHHcCCCcEEe---CCCCeEEeeEEHHHHHHHH
Confidence 99999999999998999999999999999987655 5678889999999999888 7789999999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccc-----eeecCCCCCCCCcccccHHHHH
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK-----HVIRMPRNGDVPYTHANVSLAY 424 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~-----~~~~~~~~~~~~~~~~d~~ka~ 424 (476)
+.++.++....+ ++||+++++++|+.|+++.+.+.+|.+... ...+ ....+.....+|++|++
T Consensus 256 ~~~~~~~~~~~~-----------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~~k~~ 323 (351)
T 3ruf_A 256 ILSALAKDSAKD-----------NIYNVAVGDRTTLNELSGYIYDELNLIHHIDKLSIKYRE-FRSGDVRHSQADVTKAI 323 (351)
T ss_dssp HHHHTCCGGGCS-----------EEEEESCSCCEEHHHHHHHHHHHHHTTCCC-----EEEC-CCTTCCSBCCBCCHHHH
T ss_pred HHHHhhccccCC-----------CEEEeCCCCcccHHHHHHHHHHHhCcccccccccccccC-CCCCccceeeeCHHHHH
Confidence 999988322222 999999999999999999999999984322 2222 23456667889999999
Q ss_pred HhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 425 KDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 425 ~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
++|||+|+++++++|+++++||+++.+
T Consensus 324 ~~lG~~p~~~~~~~l~~~~~~~~~~~~ 350 (351)
T 3ruf_A 324 DLLKYRPNIKIREGLRLSMPWYVRFLK 350 (351)
T ss_dssp HHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998764
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-48 Score=388.58 Aligned_cols=318 Identities=24% Similarity=0.380 Sum_probs=265.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.++|+|||||||||||++|+++|+++| ++|++++|........ .........+++++.+|++|.+.+.+++++.+
T Consensus 22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~ 98 (346)
T 4egb_A 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLN---NVKSIQDHPNYYFVKGEIQNGELLEHVIKERD 98 (346)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGG---GGTTTTTCTTEEEEECCTTCHHHHHHHHHHHT
T ss_pred cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchh---hhhhhccCCCeEEEEcCCCCHHHHHHHHhhcC
Confidence 467899999999999999999999999 7788888754222111 11112234589999999999999999999866
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCC-CCCCCCCCCCCCCCCChHHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN-TQVPFSESHRTDQPASLYAA 272 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~-~~~~~~E~~~~~~p~~~Y~~ 272 (476)
+|+|||+||.........++..++++|+.++.+|+++|++.+++ +|||+||.++||.. ...+++|+++. .|.+.|+.
T Consensus 99 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vy~~~~~~~~~~E~~~~-~p~~~Y~~ 176 (346)
T 4egb_A 99 VQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI-KLVQVSTDEVYGSLGKTGRFTEETPL-APNSPYSS 176 (346)
T ss_dssp CCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS-EEEEEEEGGGGCCCCSSCCBCTTSCC-CCCSHHHH
T ss_pred CCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeCchHHhCCCCcCCCcCCCCCC-CCCChhHH
Confidence 69999999987766667788899999999999999999999986 99999999999987 45688998877 88999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHH
Q 011841 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (476)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~ 352 (476)
+|.++|.+++++++++|+++++|||++||||+.....++..++..+..++++.++ +++.+.++|+|++|+|++++.+
T Consensus 177 sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~ 253 (346)
T 4egb_A 177 SKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLMVTNALEGKKLPLY---GDGLNVRDWLHVTDHCSAIDVV 253 (346)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCCEEE---TTSCCEECEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCccchHHHHHHHHHcCCCceee---CCCCeEEeeEEHHHHHHHHHHH
Confidence 9999999999999989999999999999999887777888999999999999988 7788999999999999999999
Q ss_pred HhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCcc
Q 011841 353 LDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPT 432 (476)
Q Consensus 353 l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~ 432 (476)
++++. .+ ++||+++++++++.|+++.+.+.+|.+............+.....+|++|++++|||+|+
T Consensus 254 ~~~~~-~g------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~ 320 (346)
T 4egb_A 254 LHKGR-VG------------EVYNIGGNNEKTNVEVVEQIITLLGKTKKDIEYVTDRLGHDRRYAINAEKMKNEFDWEPK 320 (346)
T ss_dssp HHHCC-TT------------CEEEECCSCCEEHHHHHHHHHHHHTCCGGGCEEECC--CCCSCCCBCCHHHHHHHCCCCC
T ss_pred HhcCC-CC------------CEEEECCCCceeHHHHHHHHHHHhCCCcccccccCCCCCCcceeeccHHHHHHHcCCCCC
Confidence 99876 22 899999999999999999999999998764333334445566678999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHcCCCC
Q 011841 433 TDLAAGLRKFVKWYVSYYGIQP 454 (476)
Q Consensus 433 ~~l~e~l~~~v~~~~~~~~~~~ 454 (476)
++++|+|+++++||+++.+.++
T Consensus 321 ~~~~e~l~~~~~~~~~~~~~~~ 342 (346)
T 4egb_A 321 YTFEQGLQETVQWYEKNEEWWK 342 (346)
T ss_dssp CCHHHHHHHHHHHHHHCHHHHG
T ss_pred CCHHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999998765443
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=374.13 Aligned_cols=316 Identities=25% Similarity=0.384 Sum_probs=267.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+|+||||||+||||++++++|+++|++|++++|..+............ ...+++++.+|++|.+++.++++..++|
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (341)
T 3enk_A 3 STKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKI--TGKTPAFHETDVSDERALARIFDAHPIT 80 (341)
T ss_dssp CSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHH--HSCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred CCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhh--cCCCceEEEeecCCHHHHHHHHhccCCc
Confidence 35689999999999999999999999999999999877655544333221 2457999999999999999999966679
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
+||||||........+++...+++|+.++.+++++|++.+.+ +||++||.++||.....+++|+++. .|.+.|+.+|.
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~e~~~~-~~~~~Y~~sK~ 158 (341)
T 3enk_A 81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-RIVFSSSATVYGVPERSPIDETFPL-SATNPYGQTKL 158 (341)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGBCSCSSSSBCTTSCC-BCSSHHHHHHH
T ss_pred EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEecceEecCCCCCCCCCCCCC-CCCChhHHHHH
Confidence 999999997776677888899999999999999999999876 9999999999998888889999877 78899999999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEeeCcccCCCCC----------CCCcHHHHHHHHHc-CCceEEEeeCC------CCceeE
Q 011841 276 AGEEIAHTYNHIYG-LALTGLRFFTVYGPWGR----------PDMAYFFFTKDILQ-GKTIDVYKTQD------DREVAR 337 (476)
Q Consensus 276 ~~E~~~~~~~~~~g-i~~~ilRp~~v~G~~~~----------~~~~~~~~~~~~~~-g~~~~~~~~~~------~~~~~~ 337 (476)
++|.+++.++.+++ ++++++||++||||+.. ...++..+...... ..++.++ + ++++.+
T Consensus 159 ~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~g~~~~ 235 (341)
T 3enk_A 159 MAEQILRDVEAADPSWRVATLRYFNPVGAHESGLIGEDPAGIPNNLMPYVAQVAVGKLEKLRVF---GSDYPTPDGTGVR 235 (341)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCSSHHHHHHHHHHTSSSCEEEE---CSCSSSTTSSCEE
T ss_pred HHHHHHHHHhhcCCCceEEEEeeccccCCccccccCCCcccCccchHHHHHHHHhcCCCceEEe---CCccCCCCCCeeE
Confidence 99999999998876 99999999999999541 13344444443332 2566666 4 678999
Q ss_pred eceeHHHHHHHHHHHHhhcC--cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCc
Q 011841 338 DFTYIDDVVKGCVGALDTAG--KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPY 415 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~--~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~ 415 (476)
+|+|++|+|++++.+++++. ..+ ++||+++++++|+.|+++.+.+.+|.+..+...+. ...+...
T Consensus 236 ~~i~v~Dva~a~~~~~~~~~~~~~~------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~ 302 (341)
T 3enk_A 236 DYIHVVDLARGHIAALDALERRDAS------------LTVNLGTGRGYSVLEVVRAFEKASGRAVPYELVAR-RPGDVAE 302 (341)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTSC------------EEEEESCSCCEEHHHHHHHHHHHHCSCCCEEEECC-CTTCCSE
T ss_pred eeEEHHHHHHHHHHHHHhhhcCCcc------------eEEEeCCCCceeHHHHHHHHHHHhCCCcceeeCCC-CCCCccc
Confidence 99999999999999998742 222 99999999999999999999999999877766553 4566677
Q ss_pred ccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 416 THANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 416 ~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
..+|++|++++|||+|+++++|+|+++++||+++.+
T Consensus 303 ~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~ 338 (341)
T 3enk_A 303 CYANPAAAAETIGWKAERDLERMCADHWRWQENNPR 338 (341)
T ss_dssp ECBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHSTT
T ss_pred cccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCc
Confidence 889999999999999999999999999999998755
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=373.53 Aligned_cols=299 Identities=22% Similarity=0.309 Sum_probs=261.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+|+||||||+||||++|+++|+++|++|++++|..... . + .+++++.+|++ .+++.++++++ |+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~---------~--~~~~~~~~Dl~-~~~~~~~~~~~--d~V 66 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNK-A---------I--NDYEYRVSDYT-LEDLINQLNDV--DAV 66 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-----------------CCEEEECCCC-HHHHHHHTTTC--SEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcc-c---------C--CceEEEEcccc-HHHHHHhhcCC--CEE
Confidence 47999999999999999999999999999999973211 0 1 17899999999 99999999966 999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
||+|+..... ++...+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.+|.++
T Consensus 67 ih~a~~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~-r~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~~~ 140 (311)
T 3m2p_A 67 VHLAATRGSQ----GKISEFHDNEILTQNLYDACYENNIS-NIVYASTISAYSDETSLPWNEKELP-LPDLMYGVSKLAC 140 (311)
T ss_dssp EECCCCCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCCGGGCSBCTTSCC-CCSSHHHHHHHHH
T ss_pred EEccccCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCCCCCCCCCCCC-CCCchhHHHHHHH
Confidence 9999985543 67778899999999999999999986 9999999999998887899999877 7889999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
|.+++++.+++|++++++||+.||||+.....++..++..+..++++.++ +++++.++|+|++|+|++++.+++++.
T Consensus 141 E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~v~v~Dva~a~~~~~~~~~ 217 (311)
T 3m2p_A 141 EHIGNIYSRKKGLCIKNLRFAHLYGFNEKNNYMINRFFRQAFHGEQLTLH---ANSVAKREFLYAKDAAKSVIYALKQEK 217 (311)
T ss_dssp HHHHHHHHHHSCCEEEEEEECEEECSCC--CCHHHHHHHHHHTCCCEEES---SBCCCCEEEEEHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHcCCCEEEEeeCceeCcCCCCCCHHHHHHHHHHcCCCeEEe---cCCCeEEceEEHHHHHHHHHHHHhcCC
Confidence 99999999989999999999999999877667888899999999999887 678899999999999999999998876
Q ss_pred cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCcccCHHH
Q 011841 358 KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAA 437 (476)
Q Consensus 358 ~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~e 437 (476)
.+ ++||+++++++|+.|+++.+.+.+|.+..+...+.+...+.....+|++|++++|||+|++++++
T Consensus 218 -~~------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~ 284 (311)
T 3m2p_A 218 -VS------------GTFNIGSGDALTNYEVANTINNAFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFAT 284 (311)
T ss_dssp -CC------------EEEEECCSCEECHHHHHHHHHHHTTCTTCEEECSSSBCCSCCCBCBCCHHHHHHSCCCCSCCHHH
T ss_pred -CC------------CeEEeCCCCcccHHHHHHHHHHHhCCCCcceecCCCCCCCcCceecCHHHHHHHhCCCcccCHHH
Confidence 22 99999999999999999999999999887777665455667788899999999999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 011841 438 GLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 438 ~l~~~v~~~~~~~~~~ 453 (476)
+|+++++||++..+.+
T Consensus 285 ~l~~~~~~~~~~~~~~ 300 (311)
T 3m2p_A 285 AVEEIHLLMRGLDDVP 300 (311)
T ss_dssp HHHHHHHHHCC-----
T ss_pred HHHHHHHHHHhcccCc
Confidence 9999999998776654
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=372.11 Aligned_cols=316 Identities=31% Similarity=0.469 Sum_probs=265.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.++|+||||||+||||++|+++|+++|++|++++|................. ...+++++.+|++|.+++.++++++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~- 103 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV- 103 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC-
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC-
Confidence 3568999999999999999999999999999999965432222222221111 1258999999999999999999965
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
|+|||+||......+.++++..+++|+.++.+++++|++.+++ +|||+||.++|+.....+++|+++. .|.+.|+.+
T Consensus 104 -d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~E~~~~-~~~~~Y~~s 180 (352)
T 1sb8_A 104 -DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVEDTIG-KPLSPYAVT 180 (352)
T ss_dssp -SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhcCCCCCCCCCCCCCC-CCCChhHHH
Confidence 9999999987665566788899999999999999999999876 9999999999998777788998876 788999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
|.++|.+++.+++++|+++++|||+.||||+.... ..+..++..+.++.++.++ +++++.++|+|++|+|+++
T Consensus 181 K~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~Dva~a~ 257 (352)
T 1sb8_A 181 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQAN 257 (352)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCCcchhhHHHHHHHHHHCCCCcEEe---CCCCceEeeEEHHHHHHHH
Confidence 99999999999988899999999999999986544 4566788888889988887 6788999999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHh---CCCccce--eecCCCCCCCCcccccHHHHH
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL---NTKAKKH--VIRMPRNGDVPYTHANVSLAY 424 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~---g~~~~~~--~~~~~~~~~~~~~~~d~~ka~ 424 (476)
+.++.......+ ++||+++++++|+.|+++.+.+.+ |.+.... ..+ ....+.....+|++|++
T Consensus 258 ~~~~~~~~~~~~-----------~~~ni~~~~~~s~~e~~~~i~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~k~~ 325 (352)
T 1sb8_A 258 LLAATAGLDARN-----------QVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRD-FREGDVRHSLADISKAA 325 (352)
T ss_dssp HHHHTCCGGGCS-----------EEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEEC-CCTTCCSBCCBCCHHHH
T ss_pred HHHHhccccCCC-----------ceEEeCCCCCccHHHHHHHHHHHHHhcCCCCCCCceecC-CCccchhhccCCHHHHH
Confidence 999976322222 999999999999999999999999 8876532 222 22345566789999999
Q ss_pred HhcCCCcccCHHHHHHHHHHHHHHHc
Q 011841 425 KDFGYKPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 425 ~~LG~~p~~~l~e~l~~~v~~~~~~~ 450 (476)
++|||+|+++++|+|+++++||+++.
T Consensus 326 ~~lG~~p~~~~~e~l~~~~~~~~~~~ 351 (352)
T 1sb8_A 326 KLLGYAPKYDVSAGVALAMPWYIMFL 351 (352)
T ss_dssp HHTCCCCCCCHHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998765
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=366.92 Aligned_cols=302 Identities=24% Similarity=0.340 Sum_probs=259.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.+.|+||||||+||||++|+++|+++|++|++++|.... .. + +++++.+|++|.+++.+++++.++|
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~---------l---~~~~~~~Dl~d~~~~~~~~~~~~~d 76 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL---------P---NVEMISLDIMDSQRVKKVISDIKPD 76 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC---------T---TEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc---------c---eeeEEECCCCCHHHHHHHHHhcCCC
Confidence 466899999999999999999999999999999997653 11 1 7889999999999999999875679
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCCC--CCCCCCCCCCCCCCCChHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLN--TQVPFSESHRTDQPASLYAA 272 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~~--~~~~~~E~~~~~~p~~~Y~~ 272 (476)
+|||+||......+.++++..+++|+.++.+++++|++. +.+ +||++||.++||.. ...+++|+++. .|.+.|+.
T Consensus 77 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~-~iv~~SS~~v~g~~~~~~~~~~E~~~~-~~~~~Y~~ 154 (321)
T 2pk3_A 77 YIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDC-RILTIGSSEEYGMILPEESPVSEENQL-RPMSPYGV 154 (321)
T ss_dssp EEEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCC-EEEEEEEGGGTBSCCGGGCSBCTTSCC-BCCSHHHH
T ss_pred EEEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEEccHHhcCCCCCCCCCCCCCCCC-CCCCccHH
Confidence 999999987766667788999999999999999999876 454 99999999999976 56688998876 78899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHc---C--CceEEEeeCCCCceeEeceeHHHHHH
Q 011841 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ---G--KTIDVYKTQDDREVARDFTYIDDVVK 347 (476)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~---g--~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (476)
+|.++|.+++.+++++|+++++|||++||||+......+..++..+.+ | .++.++ +++.+.++|+|++|+|+
T Consensus 155 sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~v~v~Dva~ 231 (321)
T 2pk3_A 155 SKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLGFVTQDFAKQIVDIEMEKQEPIIKV---GNLEAVRDFTDVRDIVQ 231 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHHTTSSCSEEEE---SCSSCEEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCCchHHHHHHHHHHHhcCCCCCeEEe---CCCCcEEeeEEHHHHHH
Confidence 999999999999988899999999999999987765566677777766 7 577777 66788999999999999
Q ss_pred HHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecC-CCCCCCCcccccHHHHHHh
Q 011841 348 GCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM-PRNGDVPYTHANVSLAYKD 426 (476)
Q Consensus 348 a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~ka~~~ 426 (476)
+++.+++++. . | ++||++++.++++.|+++.+.+.+|.+..+...|. ....+.....+|++|++++
T Consensus 232 a~~~~~~~~~-~-g-----------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~ 298 (321)
T 2pk3_A 232 AYWLLSQYGK-T-G-----------DVYNVCSGIGTRIQDVLDLLLAMANVKIDTELNPLQLRPSEVPTLIGSNKRLKDS 298 (321)
T ss_dssp HHHHHHHHCC-T-T-----------CEEEESCSCEEEHHHHHHHHHHHSSSCCEEEECGGGCCSSCCSBCCBCCHHHHHH
T ss_pred HHHHHHhCCC-C-C-----------CeEEeCCCCCeeHHHHHHHHHHHhCCCCceeeccccCCCcccchhccCHHHHHHH
Confidence 9999998862 2 2 89999999999999999999999998766554442 1234456678999999999
Q ss_pred cCCCcccCHHHHHHHHHHHHHH
Q 011841 427 FGYKPTTDLAAGLRKFVKWYVS 448 (476)
Q Consensus 427 LG~~p~~~l~e~l~~~v~~~~~ 448 (476)
|||+|+++++|+|+++++||++
T Consensus 299 lG~~p~~~~~e~l~~~~~~~~~ 320 (321)
T 2pk3_A 299 TGWKPRIPLEKSLFEILQSYRQ 320 (321)
T ss_dssp HCCCCCSCHHHHHHHHHHHHHT
T ss_pred cCCCcCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999974
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-46 Score=367.60 Aligned_cols=301 Identities=27% Similarity=0.394 Sum_probs=256.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||++|+++|+++|++|++++|..+..... ...+++++.+|+.|.+ +.+++++ |+||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~~~~~~~Dl~d~~-~~~~~~~---d~vi 67 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREF---------VNPSAELHVRDLKDYS-WGAGIKG---DVVF 67 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGG---------SCTTSEEECCCTTSTT-TTTTCCC---SEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhh---------cCCCceEEECccccHH-HHhhcCC---CEEE
Confidence 6899999999999999999999999999999976543221 1458999999999998 8888875 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+||.........++...+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.+|.++|
T Consensus 68 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~vyg~~~~~~~~e~~~~-~p~~~Y~~sK~~~e 145 (312)
T 3ko8_A 68 HFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFASSSTVYGDADVIPTPEEEPY-KPISVYGAAKAAGE 145 (312)
T ss_dssp ECCSSCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCcHHHhCCCCCCCCCCCCCC-CCCChHHHHHHHHH
Confidence 999987667778889999999999999999999999986 9999999999999888889998876 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcC-CceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc-
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQG-KTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA- 356 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~- 356 (476)
.+++.+++++|+++++|||++||||+... ..+..++..+..+ .++.++ +++.+.++|+|++|+|++++.+++++
T Consensus 146 ~~~~~~~~~~g~~~~~lrp~~v~g~~~~~-~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~~~~~~ 221 (312)
T 3ko8_A 146 VMCATYARLFGVRCLAVRYANVVGPRLRH-GVIYDFIMKLRRNPNVLEVL---GDGTQRKSYLYVRDAVEATLAAWKKFE 221 (312)
T ss_dssp HHHHHHHHHHCCEEEEEEECEEECTTCCS-SHHHHHHHHHHHCTTEEEEC-------CEECEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeeccccCcCCCC-ChHHHHHHHHHhCCCCeEEc---CCCCeEEeeEEHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999997654 3556677777766 556666 67889999999999999999999982
Q ss_pred --CcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCC-----CCCCCCcccccHHHHHHhcCC
Q 011841 357 --GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP-----RNGDVPYTHANVSLAYKDFGY 429 (476)
Q Consensus 357 --~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~-----~~~~~~~~~~d~~ka~~~LG~ 429 (476)
...+ ++||+++++++++.|+++.+.+.+|.+..+...+.. ...+.....+|++|++++|||
T Consensus 222 ~~~~~~------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~ 289 (312)
T 3ko8_A 222 EMDAPF------------LALNVGNVDAVRVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGW 289 (312)
T ss_dssp HSCCSE------------EEEEESCSSCEEHHHHHHHHHHHHTCCCEEEEC----------CCCSEECBCCHHHHHHHCC
T ss_pred ccCCCC------------cEEEEcCCCceeHHHHHHHHHHHhCCCCceeecCccccccCCCCCccccccCHHHHHHHhCC
Confidence 2222 899999999999999999999999988766654432 234556778999999999999
Q ss_pred CcccCHHHHHHHHHHHHHHHc
Q 011841 430 KPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 430 ~p~~~l~e~l~~~v~~~~~~~ 450 (476)
+|+++++|+|+++++||+++.
T Consensus 290 ~p~~~~~~~l~~~~~~~~~~~ 310 (312)
T 3ko8_A 290 RPTMTSAEAVKKTAEDLAKEL 310 (312)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999998763
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-45 Score=364.67 Aligned_cols=310 Identities=25% Similarity=0.392 Sum_probs=258.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCC-chHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYD-PSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
+|+||||||+||||++|+++|+++| ++|++++|...... +.. .......+++++.+|++|.+++.+++.++
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 76 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL----KDLEDDPRYTFVKGDVADYELVKELVRKV-- 76 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG----TTTTTCTTEEEEECCTTCHHHHHHHHHTC--
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH----hhhccCCceEEEEcCCCCHHHHHHHhhCC--
Confidence 5789999999999999999999997 89999998642111 111 11112357999999999999999999755
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (476)
|+|||+||......+.++++.++++|+.++.+++++|.+.+..++||++||.++||.....+++|+++. .+.+.|+.+|
T Consensus 77 d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~sK 155 (336)
T 2hun_A 77 DGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRL-MPSSPYSATK 155 (336)
T ss_dssp SEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCC-CCCSHHHHHH
T ss_pred CEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCC-CCCCccHHHH
Confidence 999999998766666678889999999999999999998875459999999999998766788888876 7889999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHh
Q 011841 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354 (476)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~ 354 (476)
.++|.+++.++.++|+++++|||+.||||+..+..++..++..+.+++++.++ +++.+.++|+|++|+|++++.+++
T Consensus 156 ~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~~~~~~~~ 232 (336)
T 2hun_A 156 AASDMLVLGWTRTYNLNASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIY---GTGKNVRDWLYVEDHVRAIELVLL 232 (336)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECEEESTTCCTTSHHHHHHHHHHTTCCEEEE---TC---CEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCcCchHHHHHHHHHcCCCceEe---CCCCceeeeEEHHHHHHHHHHHHh
Confidence 99999999999989999999999999999876556677788888999988888 677889999999999999999998
Q ss_pred hcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCcccC
Q 011841 355 TAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTD 434 (476)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~ 434 (476)
++. .| ++||++++.++|+.|+++.+.+.+|.+...........++.....+|++|++++|||+|+++
T Consensus 233 ~~~--~g-----------~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~ 299 (336)
T 2hun_A 233 KGE--SR-----------EIYNISAGEEKTNLEVVKIILRLMGKGEELIELVEDRPGHDLRYSLDSWKITRDLKWRPKYT 299 (336)
T ss_dssp HCC--TT-----------CEEEECCSCEECHHHHHHHHHHHTTCCSTTEEEECCCTTCCCCCCBCCHHHHHHHCCCCSSC
T ss_pred CCC--CC-----------CEEEeCCCCcccHHHHHHHHHHHhCCCcccccccCCCCCchhhhcCCHHHHHHHhCCCCCCC
Confidence 753 22 89999999999999999999999998754222222233344456789999999999999999
Q ss_pred HHHHHHHHHHHHHHHc
Q 011841 435 LAAGLRKFVKWYVSYY 450 (476)
Q Consensus 435 l~e~l~~~v~~~~~~~ 450 (476)
++|+|+++++||+++.
T Consensus 300 ~~~~l~~~~~~~~~~~ 315 (336)
T 2hun_A 300 FDEGIKKTIDWYLKNE 315 (336)
T ss_dssp HHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999998864
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=382.52 Aligned_cols=309 Identities=21% Similarity=0.343 Sum_probs=262.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC-CHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN-DAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~l~~~~~~~~ 193 (476)
+++|+||||||+||||++|+++|+++ |++|++++|..+.... .....+++++.+|++ |.+.+.++++++
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------~~~~~~v~~~~~Dl~~d~~~~~~~~~~~- 92 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGD--------LVKHERMHFFEGDITINKEWVEYHVKKC- 92 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGG--------GGGSTTEEEEECCTTTCHHHHHHHHHHC-
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhh--------hccCCCeEEEeCccCCCHHHHHHHhccC-
Confidence 56789999999999999999999998 9999999997653322 122458999999999 999999999976
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCC------CCC
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD------QPA 267 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~------~p~ 267 (476)
|+|||+||.........++...+++|+.++.+|+++|++.+ + +|||+||.++||.....+++|++.+. .|.
T Consensus 93 -d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~-~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~ 169 (372)
T 3slg_A 93 -DVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPSTSEVYGMCADEQFDPDASALTYGPINKPR 169 (372)
T ss_dssp -SEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-C-EEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTT
T ss_pred -CEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-C-cEEEeCcHHHhCCCCCCCCCccccccccCCCCCCC
Confidence 99999999988777778899999999999999999999998 5 99999999999988877888887542 566
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC--------CCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
+.|+.+|+++|.+++++.++ |+++++|||++||||+... ..++..++..+.+++++.++ +++++.++|
T Consensus 170 ~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~ 245 (372)
T 3slg_A 170 WIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLV---DGGSQKRAF 245 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCTTCSBSCSCHHHHHHHHHHHHTCCEEEG---GGGCCEEEC
T ss_pred CcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccccccccccchHHHHHHHHHHcCCCcEEe---CCCceEEEE
Confidence 79999999999999999988 9999999999999997543 34678888999999999887 667899999
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC-CcccHHHHHHHHHHHhCCCccceeecCCC--------
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT-SPVPVGRLVSILENLLNTKAKKHVIRMPR-------- 409 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~-~~vt~~el~~~l~~~~g~~~~~~~~~~~~-------- 409 (476)
+|++|+|++++.+++++.. ..+ ++||++++ +++|+.|+++.+.+.+|.+..+...+...
T Consensus 246 i~v~Dva~a~~~~~~~~~~~~~~-----------~~~ni~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 314 (372)
T 3slg_A 246 TYVDDGISALMKIIENSNGVATG-----------KIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSG 314 (372)
T ss_dssp EEHHHHHHHHHHHHHCGGGTTTT-----------EEEEECCTTCEEEHHHHHHHHHHHHHHCTTTHHHHHTCCEEEC---
T ss_pred EEHHHHHHHHHHHHhcccCcCCC-----------ceEEeCCCCCCccHHHHHHHHHHHhCCCcccccccccceeeecccc
Confidence 9999999999999998752 122 99999994 89999999999999999876543332110
Q ss_pred ------CCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 410 ------NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 410 ------~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
..+.....+|++|++++|||+|+++++++|+++++||+++..
T Consensus 315 ~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 362 (372)
T 3slg_A 315 AYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGHVA 362 (372)
T ss_dssp ----------CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTCHH
T ss_pred ccccCCccccceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 134556778999999999999999999999999999977654
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-44 Score=361.48 Aligned_cols=308 Identities=28% Similarity=0.455 Sum_probs=260.4
Q ss_pred CEEEEECCCChhhHHHHHHHHHC---C---CeEEEEeCCCCCCCc-hHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR---G---DGVLGLDNFNSYYDP-SLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~---G---~~V~~~~R~~~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
|+||||||+||||++|+++|+++ | ++|++++|....... ... ......+++++.+|++|.+++.+++.+
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~----~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLA----PVDADPRLRFVHGDIRDAGLLARELRG 76 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGG----GGTTCTTEEEEECCTTCHHHHHHHTTT
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhh----hcccCCCeEEEEcCCCCHHHHHHHhcC
Confidence 68999999999999999999997 8 999999996532111 111 111235899999999999999999976
Q ss_pred CCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHH
Q 011841 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYA 271 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (476)
+ |+|||+||......+..+++..+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+
T Consensus 77 ~--d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~ 152 (337)
T 1r6d_A 77 V--DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYA 152 (337)
T ss_dssp C--CEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBCTTSCC-CCCSHHH
T ss_pred C--CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCCCCCCCCCCCC-CCCCchH
Confidence 5 9999999987666566788899999999999999999999886 9999999999998766788888876 7889999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHH
Q 011841 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~ 351 (476)
.+|.++|.+++.+.+++|++++++||+.||||+.....++..++..+.+++++.++ +++++.++|+|++|+|++++.
T Consensus 153 ~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~ 229 (337)
T 1r6d_A 153 ASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLY---GDGANVREWVHTDDHCRGIAL 229 (337)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEE---TTSCCEEEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCCCChHHHHHHHHhcCCCcEEe---CCCCeeEeeEeHHHHHHHHHH
Confidence 99999999999999888999999999999999876556677788888999988887 678889999999999999999
Q ss_pred HHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCc
Q 011841 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKP 431 (476)
Q Consensus 352 ~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p 431 (476)
+++++. . | ++||++++.++|+.|+++.+.+.+|.+..................+|++|++++|||+|
T Consensus 230 ~~~~~~-~-g-----------~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 296 (337)
T 1r6d_A 230 VLAGGR-A-G-----------EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRP 296 (337)
T ss_dssp HHHHCC-T-T-----------CEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCC
T ss_pred HHhCCC-C-C-----------CEEEeCCCCCccHHHHHHHHHHHhCCCcccceecCCCCCCcceeecCHHHHHHHcCCCC
Confidence 998753 2 2 89999999999999999999999998753222222233334456689999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHc
Q 011841 432 TTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 432 ~~~l~e~l~~~v~~~~~~~ 450 (476)
+++++|+|+++++||+++.
T Consensus 297 ~~~~~e~l~~~~~~~~~~~ 315 (337)
T 1r6d_A 297 QVSFADGLARTVRWYRENR 315 (337)
T ss_dssp CSCHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhch
Confidence 9999999999999998753
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=360.54 Aligned_cols=312 Identities=24% Similarity=0.358 Sum_probs=258.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+|+||||||+||||++|+++|+++|++|++++|......+ .+. .+++++.+|++|.+.+.++++..++|+|
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------~~~-~~~~~~~~D~~~~~~~~~~~~~~~~d~v 71 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED--------AIT-EGAKFYNGDLRDKAFLRDVFTQENIEAV 71 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG--------GSC-TTSEEEECCTTCHHHHHHHHHHSCEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchh--------hcC-CCcEEEECCCCCHHHHHHHHhhcCCCEE
Confidence 3789999999999999999999999999999986543221 111 2789999999999999999984456999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
||+||......+.++++..+++|+.++.+|+++|++.+++ +||++||.++|+.....+++|+++. .|.+.|+.+|.++
T Consensus 72 ih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~~~~~~~~~E~~~~-~~~~~Y~~sK~~~ 149 (330)
T 2c20_A 72 MHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSSTAATYGEVDVDLITEETMT-NPTNTYGETKLAI 149 (330)
T ss_dssp EECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGGCSCSSSSBCTTSCC-CCSSHHHHHHHHH
T ss_pred EECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeCCceeeCCCCCCCCCcCCCC-CCCChHHHHHHHH
Confidence 9999987665566788899999999999999999999876 9999999999998777789999877 7889999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeeCcccCCCCC---------CCCcHHHHHHHHHc-CCceEEEee---CCCCceeEeceeHHH
Q 011841 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGR---------PDMAYFFFTKDILQ-GKTIDVYKT---QDDREVARDFTYIDD 344 (476)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G~~~~---------~~~~~~~~~~~~~~-g~~~~~~~~---~~~~~~~~~~v~v~D 344 (476)
|.+++.+.+++|+++++|||++||||+.. ...++..+.+.+.. +.++.+++. ..++++.++|+|++|
T Consensus 150 e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~D 229 (330)
T 2c20_A 150 EKMLHWYSQASNLRYKIFRYFNVAGATPNGIIGEDHRPETHLIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVED 229 (330)
T ss_dssp HHHHHHHHHTSSCEEEEEECSEEECCCTTCSSCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHH
T ss_pred HHHHHHHHHHhCCcEEEEecCcccCCCCcCccccccccccchHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHH
Confidence 99999999888999999999999999621 23345555554443 345666620 015778999999999
Q ss_pred HHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHH
Q 011841 345 VVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLA 423 (476)
Q Consensus 345 va~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka 423 (476)
+|++++.+++++... .+ ++||+++++++|+.|+++.+.+.+|.+.+....+. ..++.....+|++|+
T Consensus 230 va~a~~~~~~~~~~~~~~-----------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~ 297 (330)
T 2c20_A 230 LVAAHFLGLKDLQNGGES-----------DFYNLGNGNGFSVKEIVDAVREVTNHEIPAEVAPR-RAGDPARLVASSQKA 297 (330)
T ss_dssp HHHHHHHHHHHHHTTCCC-----------EEEECCCTTCBCHHHHHHHHHHHTTSCCCEEEECC-CSSCCSEECBCCHHH
T ss_pred HHHHHHHHHhccccCCCC-----------CeEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCC-CCCcccccccCHHHH
Confidence 999999999876432 12 89999999999999999999999998876655543 234556778999999
Q ss_pred HHhcCCCccc-CHHHHHHHHHHHHHHHcCC
Q 011841 424 YKDFGYKPTT-DLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 424 ~~~LG~~p~~-~l~e~l~~~v~~~~~~~~~ 452 (476)
+++|||+|++ +++|+|+++++||+++.+.
T Consensus 298 ~~~lG~~p~~~~l~~~l~~~~~~~~~~~~~ 327 (330)
T 2c20_A 298 KEKLGWDPRYVNVKTIIEHAWNWHQKQPNG 327 (330)
T ss_dssp HHHHCCCCSCCCHHHHHHHHHHHHHHCSSC
T ss_pred HHHhCCCCccCCHHHHHHHHHHHHHHhhhc
Confidence 9999999999 9999999999999887654
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=364.05 Aligned_cols=300 Identities=18% Similarity=0.221 Sum_probs=256.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++|+||||||+||||++|+++|+++|+ +.. ....+++++.+|++|.+.+.+++++.++|
T Consensus 4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~--------------~~~~~~~~~~~D~~d~~~~~~~~~~~~~d 63 (319)
T 4b8w_A 4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LPG--------------EDWVFVSSKDADLTDTAQTRALFEKVQPT 63 (319)
T ss_dssp CCCCEEEEETCSSHHHHHHHHHHHTTTC------CTT--------------CEEEECCTTTCCTTSHHHHHHHHHHSCCS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhcCC------ccc--------------ccccccCceecccCCHHHHHHHHhhcCCC
Confidence 4678999999999999999999999998 100 01124455679999999999999987779
Q ss_pred EEEEccccCC-hhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCC----CCCCCCC-h
Q 011841 196 HVLHLAAQAG-VRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESH----RTDQPAS-L 269 (476)
Q Consensus 196 ~Vi~~Ag~~~-~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~----~~~~p~~-~ 269 (476)
+|||+|+... .....+++...+++|+.++.+|+++|++.+++ +|||+||.++||.....+++|++ +. .|.. .
T Consensus 64 ~Vih~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~~~~~-~p~~~~ 141 (319)
T 4b8w_A 64 HVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCLSTCIFPDKTTYPIDETMIHNGPP-HNSNFG 141 (319)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGSCSSCCSSBCGGGGGBSCC-CSSSHH
T ss_pred EEEECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEcchhhcCCCCCCCccccccccCCC-CCCcch
Confidence 9999999865 34566788899999999999999999999986 99999999999988888999987 44 4555 6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC----CcHHHHHHH----HHcCCceEEEeeCCCCceeEecee
Q 011841 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKD----ILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
|+.+|.++|.+++.+.+++|++++++||++||||+.... ..+..++.. +..++++.++ +++++.++|+|
T Consensus 142 Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~ 218 (319)
T 4b8w_A 142 YSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVW---GTGNPRRQFIY 218 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCTTTSCHHHHHHHHHHHHHHHTCCEEEE---SCSCCEECEEE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCCccccccHHHHHHHHHHhccCCceEEe---CCCCeeEEEEe
Confidence 999999999999999999999999999999999986532 355666666 7889999988 77899999999
Q ss_pred HHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHH
Q 011841 342 IDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVS 421 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ 421 (476)
++|+|++++.+++++....+ ++||+++++++|+.|+++.+.+.+|.+..+...+.. ..+.....+|++
T Consensus 219 v~Dva~a~~~~~~~~~~~~~-----------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~d~~ 286 (319)
T 4b8w_A 219 SLDLAQLFIWVLREYNEVEP-----------IILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTK-SDGQFKKTASNS 286 (319)
T ss_dssp HHHHHHHHHHHHHHCCCSSC-----------EEECCCGGGCEEHHHHHHHHHHHTTCCSCEEEETTS-CCCCSCCCBCCH
T ss_pred HHHHHHHHHHHHhccccCCc-----------eEEEecCCCceeHHHHHHHHHHHhCCCCcEEeCCCC-CcCcccccCCHH
Confidence 99999999999998654332 899999999999999999999999988777666543 345566789999
Q ss_pred HHHHhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 422 LAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 422 ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
|++++|||+|.++++|+|+++++||+++.+.
T Consensus 287 k~~~~lg~~p~~~~~~~l~~~~~~~~~~~~~ 317 (319)
T 4b8w_A 287 KLRTYLPDFRFTPFKQAVKETCAWFTDNYEQ 317 (319)
T ss_dssp HHHHHCTTCCCCCHHHHHHHHHHHHHHSCSS
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987653
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-45 Score=362.86 Aligned_cols=315 Identities=22% Similarity=0.207 Sum_probs=260.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+|+||||||+||||++|+++|+++|++|++++|......... ........+++++.+|++|.+++.++++++++|
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 88 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWR---LRELGIEGDIQYEDGDMADACSVQRAVIKAQPQ 88 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHH---HHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccc---hhhccccCceEEEECCCCCHHHHHHHHHHcCCC
Confidence 56789999999999999999999999999999999765432211 111112357999999999999999999987789
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
+|||+||......+..+++..+++|+.++.+++++|++.++.++||++||.++||.....+++|+++. .|.+.|+.+|.
T Consensus 89 ~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~~sK~ 167 (335)
T 1rpn_A 89 EVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPF-YPRSPYGVAKL 167 (335)
T ss_dssp EEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHH
T ss_pred EEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCC-CCCChhHHHHH
Confidence 99999998776666778899999999999999999999886349999999999998877788998876 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCC---cHHHHHHHHHcCCce-EEEeeCCCCceeEeceeHHHHHHHHHH
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM---AYFFFTKDILQGKTI-DVYKTQDDREVARDFTYIDDVVKGCVG 351 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~v~v~Dva~a~~~ 351 (476)
++|.+++.+.++++++++++||+.+|||+..... .+..++..+..|+.. ..+ +++++.++|+|++|+|++++.
T Consensus 168 ~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~g~~~~~~i~v~Dva~a~~~ 244 (335)
T 1rpn_A 168 YGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRL---GNVDAKRDWGFAGDYVEAMWL 244 (335)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE---SCTTCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCcchHHHHHHHHHHHcCCCceEEe---CCCcceeceEEHHHHHHHHHH
Confidence 9999999999888999999999999999765443 244566667777643 344 667899999999999999999
Q ss_pred HHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccc-eeec-C-CCCCCCCcccccHHHHHHhcC
Q 011841 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK-HVIR-M-PRNGDVPYTHANVSLAYKDFG 428 (476)
Q Consensus 352 ~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~-~~~~-~-~~~~~~~~~~~d~~ka~~~LG 428 (476)
+++++. . ++||+++++++|+.|+++.+.+.+|.+... ...+ . ....+.....+|++|++++||
T Consensus 245 ~~~~~~--~------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 310 (335)
T 1rpn_A 245 MLQQDK--A------------DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLG 310 (335)
T ss_dssp HHHSSS--C------------CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHC
T ss_pred HHhcCC--C------------CEEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccCCCcchhhcCCHHHHHHhcC
Confidence 998754 2 789999999999999999999999986431 1111 1 123445567789999999999
Q ss_pred CCcccCHHHHHHHHHHHHHHHcC
Q 011841 429 YKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 429 ~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
|+|+++++|+|+++++||+++.+
T Consensus 311 ~~p~~~l~e~l~~~~~~~~~~~~ 333 (335)
T 1rpn_A 311 WKPRTSLDELIRMMVEADLRRVS 333 (335)
T ss_dssp CCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998764
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=371.23 Aligned_cols=299 Identities=25% Similarity=0.261 Sum_probs=256.4
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..++|+||||||+||||++|+++|+++|++|++++|.... .+++++.+|++|.+.+.++++++
T Consensus 16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~---------------~~~~~~~~Dl~d~~~~~~~~~~~-- 78 (347)
T 4id9_A 16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG---------------TGGEEVVGSLEDGQALSDAIMGV-- 78 (347)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS---------------SCCSEEESCTTCHHHHHHHHTTC--
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC---------------CCccEEecCcCCHHHHHHHHhCC--
Confidence 3577899999999999999999999999999999996542 47889999999999999999966
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC--CCCCCCCCCCCCCCCCChHHH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL--NTQVPFSESHRTDQPASLYAA 272 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~--~~~~~~~E~~~~~~p~~~Y~~ 272 (476)
|+|||+|+..... ....+..+++|+.++.+|+++|++.+++ +|||+||.++||. ....+++|+++. .|.+.|+.
T Consensus 79 d~vih~A~~~~~~--~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~~~E~~~~-~~~~~Y~~ 154 (347)
T 4id9_A 79 SAVLHLGAFMSWA--PADRDRMFAVNVEGTRRLLDAASAAGVR-RFVFASSGEVYPENRPEFLPVTEDHPL-CPNSPYGL 154 (347)
T ss_dssp SEEEECCCCCCSS--GGGHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGTTTTSCSSSSBCTTSCC-CCCSHHHH
T ss_pred CEEEECCcccCcc--hhhHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHHhCCCCCCCCCcCCCCCC-CCCChHHH
Confidence 9999999985543 2334789999999999999999999986 9999999999998 566689999877 78899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeeCccc-------------CCCCCC-----------CCcHHHHHHHHHcCCceEEEe
Q 011841 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVY-------------GPWGRP-----------DMAYFFFTKDILQGKTIDVYK 328 (476)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~-------------G~~~~~-----------~~~~~~~~~~~~~g~~~~~~~ 328 (476)
+|.++|.+++.+.+++|+++++|||++|| ||+... ..++..++..+..++++.++
T Consensus 155 sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 233 (347)
T 4id9_A 155 TKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRPRIHQQQNFGNAAIAELLQSRDIGEPSHIL- 233 (347)
T ss_dssp HHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHHHHHHHHHHTCHHHHHHHHHHCCSSCCEEE-
T ss_pred HHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCcccccccccccccchhHHHHHHHHHHcCCCeEEe-
Confidence 99999999999999999999999999999 876432 34667788888999998888
Q ss_pred eCCCCceeEec----eeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcccee
Q 011841 329 TQDDREVARDF----TYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV 404 (476)
Q Consensus 329 ~~~~~~~~~~~----v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~ 404 (476)
+++.+.++| +|++|+|++++.+++++...+ ++|||++++++|+.|+++.+.+.+|.+.....
T Consensus 234 --g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~ 299 (347)
T 4id9_A 234 --ARNENGRPFRMHITDTRDMVAGILLALDHPEAAG------------GTFNLGADEPADFAALLPKIAALTGLPIVTVD 299 (347)
T ss_dssp --EECTTCCBCEECEEEHHHHHHHHHHHHHCGGGTT------------EEEEESCSSCEEHHHHHHHHHHHHCCCEEEEE
T ss_pred --CCCCcccCCccCcEeHHHHHHHHHHHhcCcccCC------------CeEEECCCCcccHHHHHHHHHHHhCCCCceee
Confidence 557778899 999999999999999875443 99999999999999999999999998776654
Q ss_pred ecCCCCCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCCC
Q 011841 405 IRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 405 ~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 453 (476)
.+.. .....+|++|++++|||+|+++++++|+++++||++....+
T Consensus 300 ~p~~----~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~~ 344 (347)
T 4id9_A 300 FPGD----GVYYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRLAKE 344 (347)
T ss_dssp CSSC----CCBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC--
T ss_pred CCCc----ccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 4322 22678999999999999999999999999999999987653
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=363.80 Aligned_cols=302 Identities=25% Similarity=0.394 Sum_probs=249.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||++|+++|+++| .|+++++....... ....++.++.+|++| +++.++++++ |+||
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~---------~~~~~~~~~~~Dl~~-~~~~~~~~~~--d~vi 68 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEE---------FVNEAARLVKADLAA-DDIKDYLKGA--EEVW 68 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGG---------GSCTTEEEECCCTTT-SCCHHHHTTC--SEEE
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChh---------hcCCCcEEEECcCCh-HHHHHHhcCC--CEEE
Confidence 689999999999999999999999 55555553332111 113479999999999 8999999866 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+|+......+.++++..+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.+|.++|
T Consensus 69 h~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~vyg~~~~~~~~E~~~~-~~~~~Y~~sK~~~e 146 (313)
T 3ehe_A 69 HIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTSTVYGEAKVIPTPEDYPT-HPISLYGASKLACE 146 (313)
T ss_dssp ECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCchHHhCcCCCCCCCCCCCC-CCCCHHHHHHHHHH
Confidence 999986666677889999999999999999999999976 9999999999998888889988876 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcC-CceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQG-KTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
.+++.+++++|++++++||++||||+... ..+..++..+..+ .++.++ +++++.++|+|++|+|++++.+++..
T Consensus 147 ~~~~~~~~~~g~~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~~~~~- 221 (313)
T 3ehe_A 147 ALIESYCHTFDMQAWIYRFANVIGRRSTH-GVIYDFIMKLKRNPEELEIL---GNGEQNKSYIYISDCVDAMLFGLRGD- 221 (313)
T ss_dssp HHHHHHHHHTTCEEEEEECSCEESTTCCC-SHHHHHHHHHHHCTTEEEES---TTSCCEECCEEHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHhcCCCEEEEeeccccCcCCCc-ChHHHHHHHHHcCCCceEEe---CCCCeEEeEEEHHHHHHHHHHHhccC-
Confidence 99999999999999999999999997664 4566677777766 566666 77889999999999999999999832
Q ss_pred cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCC--CCCCCCcccccHHHHHHhcCCCcccCH
Q 011841 358 KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP--RNGDVPYTHANVSLAYKDFGYKPTTDL 435 (476)
Q Consensus 358 ~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~--~~~~~~~~~~d~~ka~~~LG~~p~~~l 435 (476)
..+ ++||+++++++|+.|+++.+.+.+|.+..+...+.+ ...+.....+|++|++ +|||+|++++
T Consensus 222 ~~~------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lG~~p~~~~ 288 (313)
T 3ehe_A 222 ERV------------NIFNIGSEDQIKVKRIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLK-RLGWKPRYNS 288 (313)
T ss_dssp SSE------------EEEECCCSCCEEHHHHHHHHHHHTTCCCEEEEC------------CCBCCHHHH-HHTCCCSCCH
T ss_pred CCC------------ceEEECCCCCeeHHHHHHHHHHHhCCCCceEECCCccCCccccceeccCHHHHH-HcCCCCCCCH
Confidence 222 899999999999999999999999988766554422 2345566789999995 5999999999
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 011841 436 AAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 436 ~e~l~~~v~~~~~~~~~~ 453 (476)
+|+|+++++||+++.+.+
T Consensus 289 ~e~l~~~~~~~~~~~~~~ 306 (313)
T 3ehe_A 289 EEAVRMAVRDLVEDLDEE 306 (313)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhCcccc
Confidence 999999999999988754
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-45 Score=364.49 Aligned_cols=314 Identities=23% Similarity=0.337 Sum_probs=257.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||++|+++|+++|++|++++|....... ..........+++++.+|++|.+++.+++++.++|+||
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 78 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGAT---DNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCF 78 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHH---HHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCch---hhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEE
Confidence 689999999999999999999999999999985422111 11111122346899999999999999999884559999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCC----------------CCCCCC
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVP----------------FSESHR 262 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~----------------~~E~~~ 262 (476)
|+||......+.++++..+++|+.++.+++++|++.+++++|||+||.++||.....+ ++|+++
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~ 158 (347)
T 1orr_A 79 HLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQ 158 (347)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSC
T ss_pred ECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCC
Confidence 9999876665667888999999999999999999988755999999999998754433 455555
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC---CcHHHHHHHHHcCC-----ceEEEeeCCCCc
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD---MAYFFFTKDILQGK-----TIDVYKTQDDRE 334 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~g~-----~~~~~~~~~~~~ 334 (476)
. .+.+.|+.+|.++|.+++.++.++|+++++|||+.||||+.... ..+..++..+..++ ++.++ ++++
T Consensus 159 ~-~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~ 234 (347)
T 1orr_A 159 L-DFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTIS---GNGK 234 (347)
T ss_dssp C-CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEE---SSSC
T ss_pred C-CCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCCcCcHHHHHHHHHHhCcccCCCCeEEe---cCCc
Confidence 4 67889999999999999999988899999999999999975431 24566777777666 67777 6788
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC--cccHHHHHHHHHHHhCCCccceeecCCCCCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS--PVPVGRLVSILENLLNTKAKKHVIRMPRNGD 412 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~--~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~ 412 (476)
+.++|+|++|+|++++.+++++....| ++||++++. ++|+.|+++.+.+.+|.+..+...+ ....+
T Consensus 235 ~~~~~i~v~Dva~a~~~~~~~~~~~~g-----------~~~~v~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~-~~~~~ 302 (347)
T 1orr_A 235 QVRDVLHAEDMISLYFTALANVSKIRG-----------NAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLP-VRESD 302 (347)
T ss_dssp CEEECEEHHHHHHHHHHHHHTHHHHTT-----------CEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEEC-CCSSC
T ss_pred ceEeeEEHHHHHHHHHHHHhccccCCC-----------CEEEeCCCCCCCccHHHHHHHHHHHhCCCCCceeCC-CCCCC
Confidence 999999999999999999986322222 899999986 4999999999999999887666655 33445
Q ss_pred CCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 413 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 413 ~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
.....+|++|++++|||+|+++++|+|+++++||+++.+
T Consensus 303 ~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 341 (347)
T 1orr_A 303 QRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSILE 341 (347)
T ss_dssp CSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHC--
T ss_pred cceeecCHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHH
Confidence 566789999999999999999999999999999998765
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-44 Score=359.36 Aligned_cols=317 Identities=29% Similarity=0.439 Sum_probs=260.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC------CCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY------YDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~------~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
+|+||||||+||||++|+++|+++|++|++++|.... ..+....... ....+++++.+|++|.+++.++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQE--LTGRSVEFEEMDILDQGALQRLFKK 79 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHH--HHTCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHh--ccCCceEEEECCCCCHHHHHHHHHh
Confidence 4799999999999999999999999999999986543 2222222111 1234789999999999999999985
Q ss_pred CCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCC-CChH
Q 011841 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLY 270 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p-~~~Y 270 (476)
.++|+|||+||........++++..+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .| .+.|
T Consensus 80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~E~~~~-~p~~~~Y 157 (348)
T 1ek6_A 80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQYLPLDEAHPT-GGCTNPY 157 (348)
T ss_dssp CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGGCSCSSSSBCTTSCC-CCCSSHH
T ss_pred cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEECcHHHhCCCCCCCcCCCCCC-CCCCCch
Confidence 5669999999987665566788899999999999999999998875 9999999999998777789998876 45 8899
Q ss_pred HHHHHHHHHHHHHHHHHhC--CcEEEEeeCcccCCCC------C----CCCcHHHHHHHHH-cCCceEEEee---CCCCc
Q 011841 271 AATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWG------R----PDMAYFFFTKDIL-QGKTIDVYKT---QDDRE 334 (476)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~G~~~------~----~~~~~~~~~~~~~-~g~~~~~~~~---~~~~~ 334 (476)
+.+|.++|.+++.++++ + +++++|||++||||+. . ...++..+...+. .+.++.++.. ..+++
T Consensus 158 ~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~ 236 (348)
T 1ek6_A 158 GKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGT 236 (348)
T ss_dssp HHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSS
T ss_pred HHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCCcccccCcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCc
Confidence 99999999999999877 5 9999999999999952 1 1345666666666 6777877721 01567
Q ss_pred eeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV 413 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~ 413 (476)
+.++|+|++|+|++++.+++++. ..++ ++||+++++++|+.|+++.+.+.+|.+.+....+. ..++.
T Consensus 237 ~~~~~i~v~Dva~a~~~~~~~~~~~~g~-----------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~ 304 (348)
T 1ek6_A 237 GVRDYIHVVDLAKGHIAALRKLKEQCGC-----------RIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVAR-REGDV 304 (348)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHTTTCCE-----------EEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEECC-CTTCC
T ss_pred eEEeeEEHHHHHHHHHHHHhcccccCCc-----------eEEEeCCCCCccHHHHHHHHHHHhCCCCceeeCCC-CCccc
Confidence 89999999999999999998864 2211 79999999999999999999999998876655543 23455
Q ss_pred CcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 414 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 414 ~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
....+|++|++++|||+|+++++++|+++++||+++..
T Consensus 305 ~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~~ 342 (348)
T 1ek6_A 305 AACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPS 342 (348)
T ss_dssp SEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred hhhccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccc
Confidence 66789999999999999999999999999999987643
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-44 Score=360.20 Aligned_cols=307 Identities=22% Similarity=0.345 Sum_probs=259.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
+|+||||||+||||++|+++|+++ |++|++++|........ ........+++++.+|++|.+.+.++++++ |
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 77 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKA----NLEAILGDRVELVVGDIADAELVDKLAAKA--D 77 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGG----GTGGGCSSSEEEEECCTTCHHHHHHHHTTC--S
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChh----HHhhhccCCeEEEECCCCCHHHHHHHhhcC--C
Confidence 479999999999999999999999 89999999965321111 001122358999999999999999999987 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCC------------CCCCCCCCC
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ------------VPFSESHRT 263 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~------------~~~~E~~~~ 263 (476)
+|||+||......+..+++..+++|+.++.+++++|.+.++ +|||+||.++||.... .+++|+++.
T Consensus 78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~ 155 (348)
T 1oc2_A 78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY 155 (348)
T ss_dssp EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCC
T ss_pred EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccccccccccCCCcCCCCCC
Confidence 99999998776666678889999999999999999999875 9999999999986532 578888776
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
.+.+.|+.+|.++|.+++.+..++|+++++|||+.||||+.....++..++..+..++++.++ +++.+.++|+|++
T Consensus 156 -~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~ 231 (348)
T 1oc2_A 156 -NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY---GEGKNVRDWIHTN 231 (348)
T ss_dssp -CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEE---TTSCCEEECEEHH
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCccchHHHHHHHHHcCCCceEe---cCCCceEeeEEHH
Confidence 688999999999999999999888999999999999999876556777788888899988888 6788899999999
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcc-ceeecCCCCCCCCcccccHHH
Q 011841 344 DVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK-KHVIRMPRNGDVPYTHANVSL 422 (476)
Q Consensus 344 Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~-~~~~~~~~~~~~~~~~~d~~k 422 (476)
|+|++++.+++.+. .| ++||++++.++++.|+++.+.+.+|.+.. +...+ ..........+|++|
T Consensus 232 Dva~~~~~~~~~~~--~g-----------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~~d~~k 297 (348)
T 1oc2_A 232 DHSTGVWAILTKGR--MG-----------ETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVT-DRAGHDLRYAIDASK 297 (348)
T ss_dssp HHHHHHHHHHHHCC--TT-----------CEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEEC-CCTTCCCBCCBCCHH
T ss_pred HHHHHHHHHhhCCC--CC-----------CeEEeCCCCCCCHHHHHHHHHHHhCCCccccccCC-CCCCcccccccCHHH
Confidence 99999999998753 22 89999999999999999999999998753 22222 223344456789999
Q ss_pred HHHhcCCCcccC-HHHHHHHHHHHHHHHc
Q 011841 423 AYKDFGYKPTTD-LAAGLRKFVKWYVSYY 450 (476)
Q Consensus 423 a~~~LG~~p~~~-l~e~l~~~v~~~~~~~ 450 (476)
++++|||+|+++ ++|+|+++++||+++.
T Consensus 298 ~~~~lG~~p~~~~~~~~l~~~~~~~~~~~ 326 (348)
T 1oc2_A 298 LRDELGWTPQFTDFSEGLEETIQWYTDNQ 326 (348)
T ss_dssp HHHHHCCCCSCCCHHHHHHHHHHHHHHTH
T ss_pred HHHHcCCCCCCCcHHHHHHHHHHHHHHhh
Confidence 999999999998 9999999999998753
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=365.03 Aligned_cols=316 Identities=21% Similarity=0.258 Sum_probs=260.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+|+||||||+||||++|+++|+++|++|++++|............ ....+++++.+|+.|.+++.+++++.++|+
T Consensus 8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 83 (357)
T 1rkx_A 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETA----RVADGMQSEIGDIRDQNKLLESIREFQPEI 83 (357)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHT----TTTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhh----ccCCceEEEEccccCHHHHHHHHHhcCCCE
Confidence 5689999999999999999999999999999999765543322111 123478999999999999999999866799
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCC-CCCCCCCCCCCCCChHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ-VPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~-~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
|||+||......+..++...+++|+.++.+|+++|++.+..++|||+||.++||.... .++.|+++. .+.+.|+.+|.
T Consensus 84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~-~~~~~Y~~sK~ 162 (357)
T 1rkx_A 84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAM-GGYDPYSNSKG 162 (357)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCB-CCSSHHHHHHH
T ss_pred EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCC-CCCCccHHHHH
Confidence 9999997666666778889999999999999999998862249999999999997654 467777765 68899999999
Q ss_pred HHHHHHHHHHHHh---------CCcEEEEeeCcccCCCCCC-CCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHH
Q 011841 276 AGEEIAHTYNHIY---------GLALTGLRFFTVYGPWGRP-DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (476)
Q Consensus 276 ~~E~~~~~~~~~~---------gi~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (476)
++|.+++.+..++ |+++++|||+.||||+... ..++..+++.+.+++++.+. ++++.++|+|++|+
T Consensus 163 ~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~v~v~Dv 238 (357)
T 1rkx_A 163 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIR----NPHAIRPWQHVLEP 238 (357)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCEECS----CTTCEECCEETHHH
T ss_pred HHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCccccHHHHHHHHHhcCCCEEEC----CCCCeeccEeHHHH
Confidence 9999999998765 9999999999999997643 35677888888899887654 46788999999999
Q ss_pred HHHHHHHHhhc----CcCCCCCCCCCCCCCceEEEEcCC--CcccHHHHHHHHHHHhCCCccceeecCCCCCCCCccccc
Q 011841 346 VKGCVGALDTA----GKSTGSGGKKRGPAQLRVYNLGNT--SPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHAN 419 (476)
Q Consensus 346 a~a~~~~l~~~----~~~~g~~~~~~~~~~~~i~ni~~~--~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d 419 (476)
|++++.++++. ...+ ++||++++ +++|+.|+++.+.+.+|.+..+...+.+...+.....+|
T Consensus 239 a~a~~~~~~~~~~~~~~~~------------~~~ni~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~d 306 (357)
T 1rkx_A 239 LSGYLLLAQKLYTDGAEYA------------EGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLD 306 (357)
T ss_dssp HHHHHHHHHHHHHTCGGGC------------SEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBC
T ss_pred HHHHHHHHHhhhhcCCCCC------------ceEEECCCCCCcccHHHHHHHHHHHhCCCCccccCCCCCCcCcccccCC
Confidence 99999999862 1222 89999984 689999999999999998766544433334455667899
Q ss_pred HHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCCC
Q 011841 420 VSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 420 ~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 453 (476)
++|++++|||+|+++++|+|+++++||+++....
T Consensus 307 ~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~ 340 (357)
T 1rkx_A 307 CSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGT 340 (357)
T ss_dssp CHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCcCCcHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999987654
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=358.50 Aligned_cols=302 Identities=30% Similarity=0.437 Sum_probs=255.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||++++++|+++|++|++++|....... .. ..+++++.+|++|.+++.++++..++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--------~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi 71 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE--------NV-PKGVPFFRVDLRDKEGVERAFREFRPTHVS 71 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG--------GS-CTTCCEECCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh--------hc-ccCeEEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 689999999999999999999999999999985432111 01 136788999999999999999854569999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCc-cccCC-CCCCCCCCCCCCCCCCChHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS-SVYGL-NTQVPFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~-~vyg~-~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
|+|+......+.+++...+++|+.++.+++++|++.+++ +||++||. ++||. ....+++|+++. .|.+.|+.+|.+
T Consensus 72 ~~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~~g~~~~~~~~~E~~~~-~~~~~Y~~sK~~ 149 (311)
T 2p5y_A 72 HQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFASTGGAIYGEVPEGERAEETWPP-RPKSPYAASKAA 149 (311)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEHHHHHCCCCTTCCBCTTSCC-CCCSHHHHHHHH
T ss_pred ECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCChhhcCCCCCCCCcCCCCCC-CCCChHHHHHHH
Confidence 999987666667788899999999999999999998875 99999999 89987 455578888876 678999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC---CcHHHHHHHHHcCCceEEEe--eCCCCceeEeceeHHHHHHHHHH
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD---MAYFFFTKDILQGKTIDVYK--TQDDREVARDFTYIDDVVKGCVG 351 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~---~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~v~v~Dva~a~~~ 351 (476)
+|.+++.+.+++|+++++|||++||||+.... .++..++..+.++.++.++. .++++.+.++|+|++|+|++++.
T Consensus 150 ~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~ 229 (311)
T 2p5y_A 150 FEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHAL 229 (311)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECEEECTTCCSSSTTHHHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEeeccccCcCCCCCCcCcHHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHH
Confidence 99999999988899999999999999976543 24567778888888876651 11346788999999999999999
Q ss_pred HHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCc
Q 011841 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKP 431 (476)
Q Consensus 352 ~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p 431 (476)
+++++ + ++||++++.++|+.|+++.+.+.+|.+.++...+. ...+.....+|++|+++ |||+|
T Consensus 230 ~~~~~---~------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~-lg~~p 292 (311)
T 2p5y_A 230 ALFSL---E------------GIYNVGTGEGHTTREVLMAVAEAAGKAPEVQPAPP-RPGDLERSVLSPLKLMA-HGWRP 292 (311)
T ss_dssp HHHHC---C------------EEEEESCSCCEEHHHHHHHHHHHHTCCCCEEEECC-CTTCCSBCCBCCHHHHT-TTCCC
T ss_pred HHhCC---C------------CEEEeCCCCCccHHHHHHHHHHHhCCCCCceeCCC-CccchhhccCCHHHHHH-CCCCC
Confidence 99874 2 99999999999999999999999998876655553 24456678899999999 99999
Q ss_pred ccCHHHHHHHHHHHHHH
Q 011841 432 TTDLAAGLRKFVKWYVS 448 (476)
Q Consensus 432 ~~~l~e~l~~~v~~~~~ 448 (476)
+++++|+|+++++||++
T Consensus 293 ~~~~~~~l~~~~~~~~~ 309 (311)
T 2p5y_A 293 KVGFQEGIRLTVDHFRG 309 (311)
T ss_dssp SSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999999964
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=354.53 Aligned_cols=318 Identities=25% Similarity=0.423 Sum_probs=255.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||++++++|+++|++|++++|.............. ....+++++.+|++|++++.+++++.++|+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vi 78 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER--LGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHH--HHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHh--hcCCcceEEEccCCCHHHHHHHhhccCCCEEE
Confidence 6899999999999999999999999999998755433322222111 11346889999999999999999875679999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
||||........+++...+++|+.++.+++++|++.+++ +||++||.++||.....+++|+++..++.+.|+.+|.++|
T Consensus 79 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e 157 (338)
T 1udb_A 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHH
T ss_pred ECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHH
Confidence 999986655455678889999999999999999998876 9999999999998777788888776344789999999999
Q ss_pred HHHHHHHHHh-CCcEEEEeeCcccCCCC------C----CCCcHHHHHHHHH-cCCceEEEee---CCCCceeEeceeHH
Q 011841 279 EIAHTYNHIY-GLALTGLRFFTVYGPWG------R----PDMAYFFFTKDIL-QGKTIDVYKT---QDDREVARDFTYID 343 (476)
Q Consensus 279 ~~~~~~~~~~-gi~~~ilRp~~v~G~~~------~----~~~~~~~~~~~~~-~g~~~~~~~~---~~~~~~~~~~v~v~ 343 (476)
.+++.++.++ +++++++||+++|||+. . ...++..+..... .+.++.++.. ..++.+.++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~ 237 (338)
T 1udb_A 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_dssp HHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHH
T ss_pred HHHHHHHHhcCCCceEEEeeceecCCCcccccccccccchhhHHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHH
Confidence 9999998876 89999999999999842 1 1234555555544 4556666621 01467889999999
Q ss_pred HHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHH
Q 011841 344 DVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSL 422 (476)
Q Consensus 344 Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~k 422 (476)
|+|++++.+++++. ..++ ++||+++++++|+.|+++.+.+.+|.+.+....+. ..++.....+|++|
T Consensus 238 Dva~a~~~~l~~~~~~~~~-----------~~yni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k 305 (338)
T 1udb_A 238 DLADGHVVAMEKLANKPGV-----------HIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-REGDLPAYWADASK 305 (338)
T ss_dssp HHHHHHHHHHHHHTTCCEE-----------EEEEESCSCCEEHHHHHHHHHHHHTSCCCEEEECC-CTTCCSBCCBCCHH
T ss_pred HHHHHHHHHHhhhhccCCC-----------cEEEecCCCceeHHHHHHHHHHHhCCCCcceeCCC-CCCchhhhhcCHHH
Confidence 99999999998753 2111 79999999999999999999999998766555443 34455667899999
Q ss_pred HHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 423 AYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 423 a~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
++++|||+|+++++|+|+++++||+++.+
T Consensus 306 ~~~~lG~~p~~~l~~~l~~~~~w~~~~~~ 334 (338)
T 1udb_A 306 ADRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_dssp HHHHHCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999987654
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=369.32 Aligned_cols=308 Identities=24% Similarity=0.327 Sum_probs=252.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..+|+||||||+||||++|+++|+++| ++|++++|.......... ...+++++.+|+.|++++.++++++
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~-------~~~~v~~~~~Dl~d~~~l~~~~~~~-- 100 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP-------DHPAVRFSETSITDDALLASLQDEY-- 100 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC-------CCTTEEEECSCTTCHHHHHHCCSCC--
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc-------CCCceEEEECCCCCHHHHHHHhhCC--
Confidence 356899999999999999999999999 999999996543221110 2458999999999999999999865
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCCCCCCCCC--CCCC--CC-CCCC
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFS--ESHR--TD-QPAS 268 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~~~~~~~~--E~~~--~~-~p~~ 268 (476)
|+|||+||......+..+++..+++|+.++.+|+++|++. +++ +|||+||.++||.....+++ |++. +. .|.+
T Consensus 101 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~ 179 (377)
T 2q1s_A 101 DYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDS 179 (377)
T ss_dssp SEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC--------------CCCCCCCSSCCCS
T ss_pred CEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHHHcCCCCCCCcCcccccccccccCCCC
Confidence 9999999987766666788999999999999999999998 775 99999999999987666777 7762 22 5778
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCC---------CC----CCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG---------RP----DMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~---------~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.|+.+|.++|.+++.+++++|+++++|||+.||||+. .+ ..++..++..+.+++++.++ +++++
T Consensus 180 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~g~~ 256 (377)
T 2q1s_A 180 PYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLE---NGGVA 256 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCS---GGGCC
T ss_pred chHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcccccccHHHHHHHHHHcCCCeEEe---CCCCe
Confidence 9999999999999999988899999999999999976 32 45677888889999888776 56789
Q ss_pred eEeceeHHHHHHH-HHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCC
Q 011841 336 ARDFTYIDDVVKG-CVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVP 414 (476)
Q Consensus 336 ~~~~v~v~Dva~a-~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~ 414 (476)
.++|+|++|+|++ ++.+++++. . ++||+++++++|+.|+++.+.+.+|.+..+...|. ...+..
T Consensus 257 ~~~~i~v~Dva~a~i~~~~~~~~--~------------g~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~-~~~~~~ 321 (377)
T 2q1s_A 257 TRDFIFVEDVANGLIACAADGTP--G------------GVYNIASGKETSIADLATKINEITGNNTELDRLPK-RPWDNS 321 (377)
T ss_dssp EECCEEHHHHHHHHHHHHHHCCT--T------------EEEECCCCCCEEHHHHHHHHHHHHTCCSCCCCCCC-CGGGCC
T ss_pred EEeeEEHHHHHHHHHHHHHhcCC--C------------CeEEecCCCceeHHHHHHHHHHHhCCCCCceeCCC-Cccccc
Confidence 9999999999999 999998754 2 79999999999999999999999998776555442 223444
Q ss_pred -cccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 415 -YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 415 -~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
...+|++|++++|||+|+++++|+|+++++||+++.+
T Consensus 322 ~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 359 (377)
T 2q1s_A 322 GKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKANLA 359 (377)
T ss_dssp -CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHTHH
T ss_pred cccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhhh
Confidence 6789999999999999999999999999999988653
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=366.33 Aligned_cols=309 Identities=28% Similarity=0.405 Sum_probs=254.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHH--CCCeEEEEeCCCCCCCchHHH----HHHhhhcCCceEEEEeecCCHHHHHHh-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKK--RGDGVLGLDNFNSYYDPSLKR----ARQKLLQKHQVFIVEGDLNDAPLLTKL- 188 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~--~G~~V~~~~R~~~~~~~~~~~----~~~~~~~~~~v~~~~~Dl~d~~~l~~~- 188 (476)
.++|+||||||+||||++|+++|++ +|++|++++|........... .........++.++.+|++|.++++++
T Consensus 8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 87 (362)
T 3sxp_A 8 LENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLE 87 (362)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHT
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhh
Confidence 4678999999999999999999999 999999999966411000000 000112234789999999999999998
Q ss_pred hccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCC
Q 011841 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (476)
Q Consensus 189 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (476)
+.+ +|+|||+||... .+..+++..+++|+.++.+++++|++.++ +|||+||+++||.... +++|+++. .|.+
T Consensus 88 ~~~--~D~vih~A~~~~--~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~--~~V~~SS~~vyg~~~~-~~~E~~~~-~p~~ 159 (362)
T 3sxp_A 88 KLH--FDYLFHQAAVSD--TTMLNQELVMKTNYQAFLNLLEIARSKKA--KVIYASSAGVYGNTKA-PNVVGKNE-SPEN 159 (362)
T ss_dssp TSC--CSEEEECCCCCG--GGCCCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEEEGGGGCSCCS-SBCTTSCC-CCSS
T ss_pred ccC--CCEEEECCccCC--ccccCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEeCcHHHhCCCCC-CCCCCCCC-CCCC
Confidence 554 599999999743 36678899999999999999999999886 4999999999998776 89999877 8889
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHH
Q 011841 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (476)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (476)
.|+.+|.++|.+++.+..+ +++++|||++||||+.... ..+..++..+..+.++.++ +++.+.++|+|++|
T Consensus 160 ~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v~D 234 (362)
T 3sxp_A 160 VYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYKEKTASMVLQLALGAMAFKEVKLF---EFGEQLRDFVYIED 234 (362)
T ss_dssp HHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGGGGGSCHHHHHHHHHHTTSEEECS---GGGCCEEECEEHHH
T ss_pred hhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCCCcchhHHHHHHHHHHhCCCeEEE---CCCCeEEccEEHHH
Confidence 9999999999999998765 8999999999999987543 5678888999999988877 66789999999999
Q ss_pred HHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHH
Q 011841 345 VVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAY 424 (476)
Q Consensus 345 va~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~ 424 (476)
+|++++.+++.+. . ++||+++++++++.|+++.+.+.+| +..+...+.+...+.....+|++|++
T Consensus 235 va~ai~~~~~~~~--~------------g~~~i~~~~~~s~~e~~~~i~~~~g-~~~~~~~~~~~~~~~~~~~~d~~k~~ 299 (362)
T 3sxp_A 235 VIQANVKAMKAQK--S------------GVYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAHIEPTI 299 (362)
T ss_dssp HHHHHHHHTTCSS--C------------EEEEESCSCEEEHHHHHHHHHHHHC-CCEEECCC-------CCCCBCCHHHH
T ss_pred HHHHHHHHHhcCC--C------------CEEEeCCCCCccHHHHHHHHHHHcC-CCceEECCCCCcCcccceecCHHHHH
Confidence 9999999998653 2 7999999999999999999999999 66665555442455667889999999
Q ss_pred HhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 425 KDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 425 ~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
++|||+|+++++++|+++++||+++++.
T Consensus 300 ~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 327 (362)
T 3sxp_A 300 LDLDYTPLYDLESGIKDYLPHIHAIFKG 327 (362)
T ss_dssp HHHCCCCCCCHHHHHHHHHHHHTCC---
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999987654
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-44 Score=357.99 Aligned_cols=309 Identities=22% Similarity=0.362 Sum_probs=254.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-HHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~~~d~ 196 (476)
|+||||||+||||++|+++|+++ |++|++++|...... ......+++++.+|++| .+.+.++++++ |+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~--d~ 70 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS--------RFLNHPHFHFVEGDISIHSEWIEYHVKKC--DV 70 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG--------GGTTCTTEEEEECCTTTCSHHHHHHHHHC--SE
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHH--------HhhcCCCeEEEeccccCcHHHHHhhccCC--CE
Confidence 68999999999999999999998 899999999654221 11234589999999998 46788888876 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCC------CCCCChH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPASLY 270 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~------~~p~~~Y 270 (476)
|||+||.........++...+++|+.++.+++++|++.+ + +|||+||.++||.....+++|+++. ..|.+.|
T Consensus 71 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y 148 (345)
T 2bll_A 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 148 (345)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH
T ss_pred EEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC-C-eEEEEecHHHcCCCCCCCcCCcccccccCcccCccccc
Confidence 999999876655556788899999999999999999988 4 9999999999998776678888753 1345689
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC--------CCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
+.+|.++|.+++.+.+++|+++++|||+.||||+... ...+..++..+.+++++.++ +++++.++|+|+
T Consensus 149 ~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~v 225 (345)
T 2bll_A 149 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTDI 225 (345)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEG---GGSCCEEECEEH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccccccccccHHHHHHHHHHcCCCcEEE---CCCCEEEEEEEH
Confidence 9999999999999998889999999999999997542 23466788888899988877 667889999999
Q ss_pred HHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC-cccHHHHHHHHHHHhCCCccceeecCCC-----------
Q 011841 343 DDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS-PVPVGRLVSILENLLNTKAKKHVIRMPR----------- 409 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~-~vt~~el~~~l~~~~g~~~~~~~~~~~~----------- 409 (476)
+|+|++++.+++++.. ..| ++||+++++ ++|+.|+++.+.+.+|.+......+...
T Consensus 226 ~Dva~a~~~~~~~~~~~~~g-----------~~~~i~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 294 (345)
T 2bll_A 226 RDGIEALYRIIENAGNRCDG-----------EIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYY 294 (345)
T ss_dssp HHHHHHHHHHHHCGGGTTTT-----------EEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC------
T ss_pred HHHHHHHHHHHhhccccCCC-----------ceEEeCCCCCCCCHHHHHHHHHHHhCCCcccccCccccccccccchhhc
Confidence 9999999999987642 122 899999986 8999999999999998765433222110
Q ss_pred ---CCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCCC
Q 011841 410 ---NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 410 ---~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 453 (476)
..+.....+|++|++++|||+|+++++++|+++++||+++.+..
T Consensus 295 ~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~~~ 341 (345)
T 2bll_A 295 GKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDLT 341 (345)
T ss_dssp ------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCTT
T ss_pred cccccchhhhcccHHHHHHhcCCCccccHHHHHHHHHHHHHHcCCCC
Confidence 12334567899999999999999999999999999999887653
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=361.66 Aligned_cols=325 Identities=23% Similarity=0.333 Sum_probs=258.2
Q ss_pred CCEEEEECCCChhhHHHHHHHH-HCCCeEEEEeCCCCCC--------CchHHHHHHhhhc---CCc---eEEEEeecCCH
Q 011841 118 GMTVLVTGAAGFVGSHCSLALK-KRGDGVLGLDNFNSYY--------DPSLKRARQKLLQ---KHQ---VFIVEGDLNDA 182 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~-~~G~~V~~~~R~~~~~--------~~~~~~~~~~~~~---~~~---v~~~~~Dl~d~ 182 (476)
+|+||||||+||||++|+++|+ ++|++|++++|..... ............. ..+ ++++.+|++|.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 4799999999999999999999 9999999999965432 1111111111111 124 89999999999
Q ss_pred HHHHHhhccCC-ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCC-------C
Q 011841 183 PLLTKLFDVVP-FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-------Q 254 (476)
Q Consensus 183 ~~l~~~~~~~~-~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~-------~ 254 (476)
+.+.++++..+ +|+|||+||......+.++++..+++|+.++.+|+++|++.+++ +|||+||.++||... .
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~SS~~v~g~~~~~~~~~~~ 160 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNA 160 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC-----CC
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEECCHHHhCCCCcccccccc
Confidence 99999998544 69999999987665566788899999999999999999999876 999999999998765 5
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC---------CCCcHHHHH----HHHHcC
Q 011841 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR---------PDMAYFFFT----KDILQG 321 (476)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~---------~~~~~~~~~----~~~~~g 321 (476)
.+++|+++. .|.+.|+.+|.++|.+++.++.++|+++++|||++||||+.. ...++..++ ..+..+
T Consensus 161 ~~~~E~~~~-~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 239 (397)
T 1gy8_A 161 EPIDINAKK-SPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPD 239 (397)
T ss_dssp CCBCTTSCC-BCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC
T ss_pred cCcCccCCC-CCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccccccccchhHHHHHHHHHHHHHHHhc
Confidence 688888876 788999999999999999999888999999999999999632 233444444 244455
Q ss_pred C------------ceEEEee---CCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCc---eEEEEcCCCcc
Q 011841 322 K------------TIDVYKT---QDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQL---RVYNLGNTSPV 383 (476)
Q Consensus 322 ~------------~~~~~~~---~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~---~i~ni~~~~~v 383 (476)
. ++.++.. ..++++.++|+|++|+|++++.+++++..... .... ++||+++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~~~~-------~~~~~~~~~~ni~~~~~~ 312 (397)
T 1gy8_A 240 QRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGP-------NDKSKYFSVFNLGTSRGY 312 (397)
T ss_dssp -----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCT-------TTGGGSEEEEEESCSCCE
T ss_pred CccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhccccccc-------ccccCCCcEEEeCCCCcc
Confidence 4 4666620 01578899999999999999999987543210 0011 68999999999
Q ss_pred cHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCccc-CHHHHHHHHHHHHHHHcCC
Q 011841 384 PVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTT-DLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 384 t~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~-~l~e~l~~~v~~~~~~~~~ 452 (476)
|+.|+++.+.+.+|.+.+....+. ..++.....+|++|++++|||+|++ +++++|+++++||+++.+.
T Consensus 313 s~~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~~~l~e~l~~~~~~~~~~~~~ 381 (397)
T 1gy8_A 313 SVREVIEVARKTTGHPIPVRECGR-REGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHPNG 381 (397)
T ss_dssp EHHHHHHHHHHHHCCCCCEEEECC-CTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCTTT
T ss_pred cHHHHHHHHHHHhCCCCCeeeCCC-CCCcccccccCHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhcccc
Confidence 999999999999998776655442 2445667889999999999999999 9999999999999887553
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=357.77 Aligned_cols=309 Identities=25% Similarity=0.447 Sum_probs=257.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCC-chHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYD-PSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~-~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|+||||||+||||++|+++|+++ |++|++++|...... ... .......+++++.+|++|.+++.++++..++|+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 76 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL----SDISESNRYNFEHADICDSAEITRIFEQYQPDA 76 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG----TTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh----hhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCE
Confidence 68999999999999999999998 799999998652111 111 111123579999999999999999998445599
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc--CCC------CeEEEecCccccCCCCC--C--------CCC
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQ------PSIVWASSSSVYGLNTQ--V--------PFS 258 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~--~~~------~~~V~~SS~~vyg~~~~--~--------~~~ 258 (476)
|||+||......+.++++..+++|+.++.+++++|.+. +++ .+||++||.++||.... . +++
T Consensus 77 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~ 156 (361)
T 1kew_A 77 VMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFT 156 (361)
T ss_dssp EEECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBC
T ss_pred EEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCC
Confidence 99999987766667788999999999999999999988 764 39999999999986542 1 678
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
|+++. .+.+.|+.+|.++|.+++.++.++|+++++|||+.||||+..+..++..++..+.+++++.++ +++.+.++
T Consensus 157 E~~~~-~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 232 (361)
T 1kew_A 157 ETTAY-APSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRD 232 (361)
T ss_dssp TTSCC-CCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEE---TTSCCEEE
T ss_pred CCCCC-CCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCcccHHHHHHHHHHcCCCceEc---CCCceeEe
Confidence 88766 788999999999999999999888999999999999999876556677788888889888888 67888999
Q ss_pred ceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccc--------eeecCCCC
Q 011841 339 FTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKK--------HVIRMPRN 410 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~--------~~~~~~~~ 410 (476)
|+|++|+|++++.+++.+. .| ++||++++.++++.|+++.+.+.+|.+... ...+ ...
T Consensus 233 ~i~v~Dva~a~~~~~~~~~--~g-----------~~~~v~~~~~~s~~e~~~~i~~~~g~~~~~~~p~~~~~~~~~-~~~ 298 (361)
T 1kew_A 233 WLYVEDHARALHMVVTEGK--AG-----------ETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVA-DRP 298 (361)
T ss_dssp EEEHHHHHHHHHHHHHHCC--TT-----------CEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEEC-CCT
T ss_pred eEEHHHHHHHHHHHHhCCC--CC-----------CEEEecCCCeeeHHHHHHHHHHHhCCcCccccccccceeecC-CCC
Confidence 9999999999999998753 22 899999999999999999999999875421 1111 122
Q ss_pred CCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHH
Q 011841 411 GDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 449 (476)
Q Consensus 411 ~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~ 449 (476)
++.....+|++|++++|||+|+++++|+|+++++||+++
T Consensus 299 ~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~ 337 (361)
T 1kew_A 299 GHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLAN 337 (361)
T ss_dssp TCCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHC
T ss_pred cccceeecCHHHHHHHhCCCCccCHHHHHHHHHHHHHhc
Confidence 334456789999999999999999999999999999875
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=362.85 Aligned_cols=321 Identities=23% Similarity=0.291 Sum_probs=254.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc------------h-HHHHHH-hhhcCCceEEEEeecCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP------------S-LKRARQ-KLLQKHQVFIVEGDLND 181 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~------------~-~~~~~~-~~~~~~~v~~~~~Dl~d 181 (476)
..+++||||||+||||++|+++|+++|++|++++|....... . ...... ......+++++.+|++|
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d 88 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD 88 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence 467899999999999999999999999999999984321000 0 000000 01123579999999999
Q ss_pred HHHHHHhhccCCccEEEEccccCChhhhhcChH---HHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCC
Q 011841 182 APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQ---SYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 182 ~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~---~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
.+++.+++++.++|+|||+||.........+++ ..+++|+.|+.+++++|++.+..++||++||.++||... .+++
T Consensus 89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~~ 167 (404)
T 1i24_A 89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIE 167 (404)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBC
T ss_pred HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCCC
Confidence 999999999856699999999876655555554 478999999999999999988634999999999998765 3666
Q ss_pred CCC-------------CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC-----------------C
Q 011841 259 ESH-------------RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP-----------------D 308 (476)
Q Consensus 259 E~~-------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~-----------------~ 308 (476)
|++ .+..|.+.|+.+|.++|.+++.+++++|+++++|||+.||||+... .
T Consensus 168 E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~ 247 (404)
T 1i24_A 168 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 247 (404)
T ss_dssp SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTC
T ss_pred ccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchh
Confidence 651 1336788999999999999999988889999999999999997642 3
Q ss_pred CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHH
Q 011841 309 MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRL 388 (476)
Q Consensus 309 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el 388 (476)
..+..++..+..|+++.++ +++.+.++|+|++|+|++++.+++++...+ .+++||+++ .++|+.|+
T Consensus 248 ~~~~~~~~~~~~g~~~~~~---g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g----------~~~~yni~~-~~~s~~e~ 313 (404)
T 1i24_A 248 TALNRFCVQAAVGHPLTVY---GKGGQTRGYLDIRDTVQCVEIAIANPAKAG----------EFRVFNQFT-EQFSVNEL 313 (404)
T ss_dssp CHHHHHHHHHHHTCCEEEE---TTSCCEEEEEEHHHHHHHHHHHHHSCCCTT----------CEEEEEECS-EEEEHHHH
T ss_pred hHHHHHHHHHHcCCeeEEe---CCCCceECcEEHHHHHHHHHHHHhCcccCC----------CceEEEECC-CCCcHHHH
Confidence 4677888899999998888 678899999999999999999998754321 115999998 88999999
Q ss_pred HHHHHHH---hCCCccceeecCCCCC-CCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 389 VSILENL---LNTKAKKHVIRMPRNG-DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 389 ~~~l~~~---~g~~~~~~~~~~~~~~-~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
++.+.+. +|.+......|..... ......+|++|++ +|||+|+++++++++++++||+.+.+.
T Consensus 314 ~~~i~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~-~LG~~p~~~~~~~l~~~~~~~~~~~~~ 380 (404)
T 1i24_A 314 ASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLM-ELGLEPHYLSDSLLDSLLNFAVQFKDR 380 (404)
T ss_dssp HHHHHHHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHH-HTTCCCCCCCHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhhCCCccccccCcccCccccceEecCHHHHH-HcCCCcCcCHHHHHHHHHHHHHhhhhc
Confidence 9999998 7877665555533221 3345668999998 699999999999999999999887654
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=352.70 Aligned_cols=316 Identities=21% Similarity=0.249 Sum_probs=259.0
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++|+||||||+||||++|+++|+++|++|++++|..+.... .. ........+++++.+|++|.+++.++++++++|+
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 78 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WR-LKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDE 78 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HH-HHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--cc-HhhccccCceeEEECCCCCHHHHHHHHHhcCCCE
Confidence 46899999999999999999999999999999997654332 11 1112223479999999999999999999877899
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
||||||......+.++++..+++|+.++.+++++|++.++.++||++||.++||.....+++|+++. .|.+.|+.+|.+
T Consensus 79 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~-~~~~~Y~~sK~~ 157 (345)
T 2z1m_A 79 VYNLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPF-YPRSPYAVAKLF 157 (345)
T ss_dssp EEECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHH
T ss_pred EEECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCC-CCCChhHHHHHH
Confidence 9999998776666788899999999999999999998886349999999999998877788888876 788999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCc---HHHHHHHHHcCCceE-EEeeCCCCceeEeceeHHHHHHHHHHH
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGKTID-VYKTQDDREVARDFTYIDDVVKGCVGA 352 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~v~v~Dva~a~~~~ 352 (476)
+|.+++.++.+++++++++|+.++|||+...... +..++..+..++... .+ +++.+.++|+|++|+|++++.+
T Consensus 158 ~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~Dva~a~~~~ 234 (345)
T 2z1m_A 158 GHWITVNYREAYNMFACSGILFNHESPLRGIEFVTRKITYSLARIKYGLQDKLVL---GNLNAKRDWGYAPEYVEAMWLM 234 (345)
T ss_dssp HHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE---SCTTCEECCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchhHHHHHHHHHHHcCCCCeeee---CCCCceeeeEEHHHHHHHHHHH
Confidence 9999999999899999999999999997654433 233455556675433 44 5678889999999999999999
Q ss_pred HhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcccee------------------e-cC-CCCCC
Q 011841 353 LDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV------------------I-RM-PRNGD 412 (476)
Q Consensus 353 l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~------------------~-~~-~~~~~ 412 (476)
++++.. ++||+++++++++.|+++.+.+.+|.+..... . +. ....+
T Consensus 235 ~~~~~~--------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 300 (345)
T 2z1m_A 235 MQQPEP--------------DDYVIATGETHTVREFVEKAAKIAGFDIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAE 300 (345)
T ss_dssp HTSSSC--------------CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSC
T ss_pred HhCCCC--------------ceEEEeCCCCccHHHHHHHHHHHhCCCccccccccccccccccccccccccCcccCCCCC
Confidence 986531 78999999999999999999999998754220 1 10 12233
Q ss_pred CCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCCC
Q 011841 413 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 413 ~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 453 (476)
.....+|++|++++|||+|+++++|+|+++++||+++.+..
T Consensus 301 ~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~~~ 341 (345)
T 2z1m_A 301 VDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVRDR 341 (345)
T ss_dssp CCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHC-
T ss_pred cceeecCHHHHHHHcCCcccCCHHHHHHHHHHHHHHHhccc
Confidence 45567899999999999999999999999999999987643
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=358.58 Aligned_cols=305 Identities=24% Similarity=0.337 Sum_probs=257.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++|+||||||+||||++|+++|+++|++|++++|........ ...+++++.+|++|.+++.++++++ |+
T Consensus 28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~---------~~~~v~~~~~Dl~d~~~~~~~~~~~--d~ 96 (379)
T 2c5a_A 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE---------DMFCDEFHLVDLRVMENCLKVTEGV--DH 96 (379)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG---------GGTCSEEEECCTTSHHHHHHHHTTC--SE
T ss_pred cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh---------ccCCceEEECCCCCHHHHHHHhCCC--CE
Confidence 568999999999999999999999999999999976543221 1247899999999999999999866 99
Q ss_pred EEEccccCChh-hhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCC-----CCCCCCCC-CCCCCCh
Q 011841 197 VLHLAAQAGVR-YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ-----VPFSESHR-TDQPASL 269 (476)
Q Consensus 197 Vi~~Ag~~~~~-~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~-----~~~~E~~~-~~~p~~~ 269 (476)
|||+||..... +...+++..+++|+.++.+++++|++.+++ +|||+||.++|+.... .+++|+++ +..|.+.
T Consensus 97 Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~ 175 (379)
T 2c5a_A 97 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDA 175 (379)
T ss_dssp EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSH
T ss_pred EEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCCh
Confidence 99999975532 335788899999999999999999999886 9999999999986432 34667652 2267889
Q ss_pred HHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHcCCc-eEEEeeCCCCceeEeceeHHH
Q 011841 270 YAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKT-IDVYKTQDDREVARDFTYIDD 344 (476)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~v~D 344 (476)
|+.+|.++|.+++.+.+++|+++++|||++||||+.... ..+..++..+..+++ +.++ +++.+.++|+|++|
T Consensus 176 Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~i~v~D 252 (379)
T 2c5a_A 176 FGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW---GDGLQTRSFTFIDE 252 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEE---SCSCCEECCEEHHH
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCcccccccHHHHHHHHHHhCCCceEEe---CCCCeeEEEEEHHH
Confidence 999999999999999888899999999999999976532 256778888888876 7777 67888999999999
Q ss_pred HHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHH
Q 011841 345 VVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAY 424 (476)
Q Consensus 345 va~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~ 424 (476)
+|++++.+++++ .. ++||+++++++|+.|+++.+.+.+|.+..+...|.+ .+.....+|++|++
T Consensus 253 va~ai~~~l~~~--~~------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~--~~~~~~~~d~~k~~ 316 (379)
T 2c5a_A 253 CVEGVLRLTKSD--FR------------EPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP--EGVRGRNSDNNLIK 316 (379)
T ss_dssp HHHHHHHHHHSS--CC------------SCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC--CCCSBCEECCHHHH
T ss_pred HHHHHHHHhhcc--CC------------CeEEeCCCCccCHHHHHHHHHHHhCCCCceeeCCCC--CCcccccCCHHHHH
Confidence 999999999875 22 889999999999999999999999988766655543 23455678999999
Q ss_pred HhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 425 KDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 425 ~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
++|||+|+++++|+|+++++||+++.+.
T Consensus 317 ~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 344 (379)
T 2c5a_A 317 EKLGWAPNMRLKEGLRITYFWIKEQIEK 344 (379)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhHhh
Confidence 9999999999999999999999987653
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=353.22 Aligned_cols=301 Identities=21% Similarity=0.313 Sum_probs=248.3
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+|+||||||+||||++|+++|+++|++|++++|.. .+|+.|.+++.++++..++|+|
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~-----------------------~~D~~d~~~~~~~~~~~~~d~v 59 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQV 59 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc-----------------------cCCccCHHHHHHHHHhcCCCEE
Confidence 57999999999999999999999999999988731 2799999999999984455999
Q ss_pred EEccccCC-hhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCC---CCCCC-ChHHH
Q 011841 198 LHLAAQAG-VRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR---TDQPA-SLYAA 272 (476)
Q Consensus 198 i~~Ag~~~-~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~---~~~p~-~~Y~~ 272 (476)
||+||... ......++...+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++ +..|. +.|+.
T Consensus 60 ih~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~ 138 (321)
T 1e6u_A 60 YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAI 138 (321)
T ss_dssp EECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHH
T ss_pred EEcCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccHH
Confidence 99999864 33456788899999999999999999999886 999999999999877778888873 22443 58999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHc----C-CceEEEeeCCCCceeEeceeHH
Q 011841 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQ----G-KTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~----g-~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
+|.++|.+++++++++|+++++|||++||||+.... .++..++..+.. | .++.++ +++++.++|+|++
T Consensus 139 sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~g~~~~~~i~v~ 215 (321)
T 1e6u_A 139 AKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVW---GSGTPMREFLHVD 215 (321)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEE---SCSCCEECEEEHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCCCCCccHHHHHHHHHHhhhcCCCceEEc---CCCCEEEEeEEHH
Confidence 999999999999988899999999999999976532 456677777664 3 577777 6788999999999
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHH
Q 011841 344 DVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLA 423 (476)
Q Consensus 344 Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka 423 (476)
|+|++++.+++++..... +.+....++||+++++++|+.|+++.+.+.+|.+..+...+.. ..+.....+|++|+
T Consensus 216 Dva~~~~~~~~~~~~~~~----~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~-~~~~~~~~~d~~k~ 290 (321)
T 1e6u_A 216 DMAAASIHVMELAHEVWL----ENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK-PDGTPRKLLDVTRL 290 (321)
T ss_dssp HHHHHHHHHHHSCHHHHH----HTSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETTS-CCCCSBCCBCCHHH
T ss_pred HHHHHHHHHHhCcccccc----cccccCCceEEeCCCCCccHHHHHHHHHHHhCCCCceEeCCCC-CCCcccccCCHHHH
Confidence 999999999987654200 0000001899999999999999999999999988766555432 33456678999999
Q ss_pred HHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 424 YKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 424 ~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
++ |||+|+++++|+|+++++||+++.+
T Consensus 291 ~~-lG~~p~~~~~~~l~~~~~~~~~~~~ 317 (321)
T 1e6u_A 291 HQ-LGWYHEISLEAGLASTYQWFLENQD 317 (321)
T ss_dssp HH-TTCCCCCCHHHHHHHHHHHHHHTC-
T ss_pred Hh-cCCccCCcHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999988765
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-44 Score=353.01 Aligned_cols=300 Identities=29% Similarity=0.406 Sum_probs=255.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++|+|||||||||||++|+++|+++|++|++++|.......... .........+++++.+|+. ++|+
T Consensus 6 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~Dl~------------~~d~ 72 (321)
T 3vps_A 6 LKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPE-GTGKFLEKPVLELEERDLS------------DVRL 72 (321)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCT-TSSEEECSCGGGCCHHHHT------------TEEE
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchh-hhhhhccCCCeeEEeCccc------------cCCE
Confidence 46899999999999999999999999999999997652100000 0001112235566666665 4599
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
|||+||.........++...++ |+.++.+++++|++.+++ +|||+||.++|+.....+++|+++. .|.+.|+.+|.+
T Consensus 73 vi~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~-~~v~~SS~~v~~~~~~~~~~E~~~~-~p~~~Y~~sK~~ 149 (321)
T 3vps_A 73 VYHLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVP-KVVVGSTCEVYGQADTLPTPEDSPL-SPRSPYAASKVG 149 (321)
T ss_dssp EEECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHH
T ss_pred EEECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCC-eEEEecCHHHhCCCCCCCCCCCCCC-CCCChhHHHHHH
Confidence 9999999877667777777888 999999999999999976 9999999999999888899999887 788999999999
Q ss_pred HHHHHHHHHHHhCC-cEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 277 GEEIAHTYNHIYGL-ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 277 ~E~~~~~~~~~~gi-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
+|.+++++.+++|+ ++++|||++||||+.....++..++..+..++++.++ +++++.++|+|++|+|++++.++++
T Consensus 150 ~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~v~Dva~~~~~~~~~ 226 (321)
T 3vps_A 150 LEMVAGAHQRASVAPEVGIVRFFNVYGPGERPDALVPRLCANLLTRNELPVE---GDGEQRRDFTYITDVVDKLVALANR 226 (321)
T ss_dssp HHHHHHHHHHSSSSCEEEEEEECEEECTTCCTTSHHHHHHHHHHHHSEEEEE---TTSCCEECEEEHHHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHcCCCceEEEEeccccCcCCCCCChHHHHHHHHHcCCCeEEe---CCCCceEceEEHHHHHHHHHHHHhc
Confidence 99999999998899 9999999999999888777888999999999999888 7788999999999999999999987
Q ss_pred cCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCc-ccC
Q 011841 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKP-TTD 434 (476)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p-~~~ 434 (476)
+.. ++||+++++++|+.|+++.+. .+|.+..+...+.. ..+.....+|++|++++|||+| .++
T Consensus 227 ~~~--------------g~~~i~~~~~~s~~e~~~~i~-~~g~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lG~~p~~~~ 290 (321)
T 3vps_A 227 PLP--------------SVVNFGSGQSLSVNDVIRILQ-ATSPAAEVARKQPR-PNEITEFRADTALQTRQIGERSGGIG 290 (321)
T ss_dssp CCC--------------SEEEESCSCCEEHHHHHHHHH-TTCTTCEEEEECCC-TTCCSBCCBCCHHHHHHHCCCSCCCC
T ss_pred CCC--------------CeEEecCCCcccHHHHHHHHH-HhCCCCccccCCCC-CCCcceeeccHHHHHHHhCCCCCcCC
Confidence 543 589999999999999999999 99998777665533 4566778899999999999999 889
Q ss_pred HHHHHHHHHHHHHHHcC
Q 011841 435 LAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 435 l~e~l~~~v~~~~~~~~ 451 (476)
++++|+++++||+++..
T Consensus 291 ~~~~l~~~~~~~~~~~~ 307 (321)
T 3vps_A 291 IEEGIRLTLEWWQSRDL 307 (321)
T ss_dssp HHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 99999999999987653
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=355.20 Aligned_cols=319 Identities=21% Similarity=0.230 Sum_probs=254.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCC-chHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD-PSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~-~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
+|+||||||+||||++++++|+++|++|++++|..+... .......... ....+++++.+|++|.+++.++++++++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 478999999999999999999999999999999654211 1111110000 01247899999999999999999887789
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
+|||+||........+++...+++|+.++.+++++|++.+++ ++||++||.++||.....+++|+++. .|.+.|+.+
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~-~~~~~Y~~s 159 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVA 159 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCC-CCCSHHHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCC-CCCChHHHH
Confidence 999999986655566788889999999999999999998872 49999999999998777788898876 778999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCc---HHHHHHHHHcCCc-eEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGKT-IDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
|.++|.+++.++.+++++++++|++.+|||+...... +..++..+..|+. ...+ +++++.++|+|++|+|+++
T Consensus 160 K~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~~~~~~~~i~v~Dva~a~ 236 (372)
T 1db3_A 160 KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL---GNMDSLRDWGHAKDYVKMQ 236 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEE---SCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcchhhHHHHHHHHHHcCCCCceee---cCCCceeeeeEHHHHHHHH
Confidence 9999999999999899999999999999997654332 3455666777764 3444 6678999999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcccee-------------------------
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV------------------------- 404 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~------------------------- 404 (476)
+.+++++. . ++||+++++++|+.|+++.+.+.+|.+..+..
T Consensus 237 ~~~~~~~~--~------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 302 (372)
T 1db3_A 237 WMMLQQEQ--P------------EDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDV 302 (372)
T ss_dssp HHTTSSSS--C------------CCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCE
T ss_pred HHHHhcCC--C------------ceEEEcCCCceeHHHHHHHHHHHhCCCcccccccccccccccccccccccccccccc
Confidence 99987643 1 78999999999999999999999997654221
Q ss_pred ----ecC-CCCCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCCCC
Q 011841 405 ----IRM-PRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQP 454 (476)
Q Consensus 405 ----~~~-~~~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~~ 454 (476)
.+. ....+.....+|++|++++|||+|+++++|+|+++++||++..+.++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~~ 357 (372)
T 1db3_A 303 IIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAKKHS 357 (372)
T ss_dssp EEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred eeeccccccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHHHHHHHhhhccc
Confidence 010 12234445678999999999999999999999999999999987643
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-43 Score=355.41 Aligned_cols=317 Identities=19% Similarity=0.211 Sum_probs=256.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc-hHHHHHHhhh--cCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP-SLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~-~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+||||||+||||++|+++|+++|++|++++|..+.... .......... ...+++++.+|++|.+++.++++++++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 689999999999999999999999999999997653211 1110000000 1347899999999999999999987789
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
+|||+||......+.++++..+++|+.++.+++++|++.+++ ++||++||.++|+.....+++|+++. .|.+.|+.+
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~-~~~~~Y~~s 183 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF-YPRSPYGAA 183 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCC-CCCSHHHHH
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCC-CCCChhHHH
Confidence 999999987665566788899999999999999999998872 49999999999998777788998876 678999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCc---HHHHHHHHHcCCc-eEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGKT-IDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
|.++|.+++.++.+++++++++||+.+|||+...... +..++..+..|+. ...+ +++++.++|+|++|+|+++
T Consensus 184 K~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~~~~~~~~i~v~Dva~a~ 260 (375)
T 1t2a_A 184 KLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL---GNLDAKRDWGHAKDYVEAM 260 (375)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEE---SCTTCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCcchHHHHHHHHHHHcCCCceeEe---CCCCceeeeEEHHHHHHHH
Confidence 9999999999999899999999999999997654432 3445556666754 3444 6678999999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccce------------------ee-cC-CC
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH------------------VI-RM-PR 409 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~------------------~~-~~-~~ 409 (476)
+.+++++. . ++||+++++++|+.|+++.+.+.+|.+..+. .. +. ..
T Consensus 261 ~~~~~~~~--~------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 326 (375)
T 1t2a_A 261 WLMLQNDE--P------------EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYR 326 (375)
T ss_dssp HHHHHSSS--C------------CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGSC
T ss_pred HHHHhcCC--C------------ceEEEeCCCcccHHHHHHHHHHHhCCCcccccccccccccccccccceeecCcccCC
Confidence 99998754 2 7899999999999999999999999875422 01 10 12
Q ss_pred CCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCCC
Q 011841 410 NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 410 ~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 453 (476)
..+.....+|++|++++|||+|+++++|+|+++++||++..+..
T Consensus 327 ~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~~ 370 (375)
T 1t2a_A 327 PTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRTN 370 (375)
T ss_dssp SSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhhccC
Confidence 23445567899999999999999999999999999999987643
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=346.61 Aligned_cols=305 Identities=25% Similarity=0.397 Sum_probs=252.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++|+||||||+||||++|+++|+++|++|++++|......... .......+++++.+|+.|.. +.+ +|
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~~~~~~~D~~~~~-----~~~--~d 93 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNV----EHWIGHENFELINHDVVEPL-----YIE--VD 93 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGT----GGGTTCTTEEEEECCTTSCC-----CCC--CS
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhh----hhhccCCceEEEeCccCChh-----hcC--CC
Confidence 46789999999999999999999999999999999654322111 11122357999999998853 444 59
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCC----CCCCCChHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR----TDQPASLYA 271 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~----~~~p~~~Y~ 271 (476)
+|||+||.........++...+++|+.++.+++++|++.++ +||++||.++||.....+++|+++ +..|.+.|+
T Consensus 94 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~ 171 (343)
T 2b69_A 94 QIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYD 171 (343)
T ss_dssp EEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHH
T ss_pred EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchH
Confidence 99999998766555678889999999999999999999884 899999999999877667888741 235678899
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC--CCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
.+|.++|.+++.+.+++|++++++||+.||||+... ...+..++..+.+++++.++ +++++.++|+|++|+|+++
T Consensus 172 ~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~v~Dva~a~ 248 (343)
T 2b69_A 172 EGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGL 248 (343)
T ss_dssp HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEE---SSSCCEEECEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCcccHHHHHHHHHHcCCCceEc---CCCCeEEeeEeHHHHHHHH
Confidence 999999999999988889999999999999997643 34667788888899998887 6788899999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCC
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGY 429 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~ 429 (476)
+.+++.+. + ++||+++++++|+.|+++.+.+.+|.+..+...+.. ..+.....+|++|++++|||
T Consensus 249 ~~~~~~~~--~------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~p~~-~~~~~~~~~d~~k~~~~lG~ 313 (343)
T 2b69_A 249 VALMNSNV--S------------SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA-QDDPQKRKPDIKKAKLMLGW 313 (343)
T ss_dssp HHHHTSSC--C------------SCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC-TTCCCCCCBCCHHHHHHHCC
T ss_pred HHHHhcCC--C------------CeEEecCCCCCcHHHHHHHHHHHhCCCCCceeCCCC-CCCCceecCCHHHHHHHcCC
Confidence 99987642 2 789999999999999999999999988766655532 23455677899999999999
Q ss_pred CcccCHHHHHHHHHHHHHHHcC
Q 011841 430 KPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 430 ~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
+|+++++|+|+++++||+++.+
T Consensus 314 ~p~~~l~e~l~~~~~~~~~~~~ 335 (343)
T 2b69_A 314 EPVVPLEEGLNKAIHYFRKELE 335 (343)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988753
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-43 Score=342.83 Aligned_cols=277 Identities=18% Similarity=0.197 Sum_probs=245.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||+++++.|+++|++|++++| ..+|+.|.+.+.++++..++|+||
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r------------------------~~~D~~d~~~~~~~~~~~~~d~vi 61 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDK------------------------KLLDITNISQVQQVVQEIRPHIII 61 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECT------------------------TTSCTTCHHHHHHHHHHHCCSEEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEecc------------------------cccCCCCHHHHHHHHHhcCCCEEE
Confidence 48999999999999999999999999999998 138999999999999975669999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+||........+++...+++|+.++.+++++|++.++ +|||+||.++|+.....+++|+++. .|.+.|+.+|.++|
T Consensus 62 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~SS~~vy~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 138 (287)
T 3sc6_A 62 HCAAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYISTDYVFQGDRPEGYDEFHNP-APINIYGASKYAGE 138 (287)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCCCCSSCBCTTSCC-CCCSHHHHHHHHHH
T ss_pred ECCcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEchhhhcCCCCCCCCCCCCCC-CCCCHHHHHHHHHH
Confidence 99999887777789999999999999999999999986 7999999999998888899999987 78999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
.+++.+. .+++++||+.||||+.. .++..++..+..++++.++ +++.++|+|++|+|++++.+++++.
T Consensus 139 ~~~~~~~----~~~~ilR~~~v~G~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~~~- 206 (287)
T 3sc6_A 139 QFVKELH----NKYFIVRTSWLYGKYGN--NFVKTMIRLGKEREEISVV-----ADQIGSPTYVADLNVMINKLIHTSL- 206 (287)
T ss_dssp HHHHHHC----SSEEEEEECSEECSSSC--CHHHHHHHHHTTCSEEEEE-----CSCEECCEEHHHHHHHHHHHHTSCC-
T ss_pred HHHHHhC----CCcEEEeeeeecCCCCC--cHHHHHHHHHHcCCCeEee-----cCcccCceEHHHHHHHHHHHHhCCC-
Confidence 9999864 47899999999999653 4677888888889998887 4588999999999999999998866
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecC----CCCCCCCcccccHHHHHHhcCCCcccC
Q 011841 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM----PRNGDVPYTHANVSLAYKDFGYKPTTD 434 (476)
Q Consensus 359 ~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~----~~~~~~~~~~~d~~ka~~~LG~~p~~~ 434 (476)
+ ++||+++++++|+.|+++.+.+.+|.+..+...+. ....+.....+|++|++ +|||+|.++
T Consensus 207 -~------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lg~~p~~~ 272 (287)
T 3sc6_A 207 -Y------------GTYHVSNTGSCSWFEFAKKIFSYANMKVNVLPVSTEEFGAAAARPKYSIFQHNMLR-LNGFLQMPS 272 (287)
T ss_dssp -C------------EEEECCCBSCEEHHHHHHHHHHHHTCCCEEEEECHHHHCCSSCCCSBCCBCCHHHH-HTTCCCCCB
T ss_pred -C------------CeEEEcCCCcccHHHHHHHHHHHcCCCcceeeeehhhcCcccCCCCcccccHHHHH-hhCCCCCcc
Confidence 2 99999999999999999999999999876665542 23345667889999999 899999999
Q ss_pred HHHHHHHHHHHHHH
Q 011841 435 LAAGLRKFVKWYVS 448 (476)
Q Consensus 435 l~e~l~~~v~~~~~ 448 (476)
++++|+++++|+++
T Consensus 273 ~~~~l~~~~~~~~~ 286 (287)
T 3sc6_A 273 WEEGLERFFIETKS 286 (287)
T ss_dssp HHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999864
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=352.77 Aligned_cols=316 Identities=22% Similarity=0.226 Sum_probs=255.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc-hHHHHHHhh-hcCC-ceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP-SLKRARQKL-LQKH-QVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~-~~~~~~~~~-~~~~-~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+||||||+||||++|+++|+++|++|++++|....... ......... .... +++++.+|++|.+++.++++++++|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 699999999999999999999999999999997653110 000000000 0112 7899999999999999999987789
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC----CeEEEecCccccCCCCCCCCCCCCCCCCCCChHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ----PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYA 271 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~----~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (476)
+|||+||......+.++++..+++|+.++.+|+++|++.+++ .+|||+||.++||.... +++|+++. .|.+.|+
T Consensus 109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~~~~-~~~~~Y~ 186 (381)
T 1n7h_A 109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETTPF-HPRSPYA 186 (381)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTTSCC-CCCSHHH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCCCCC-CCCCchH
Confidence 999999987766667788899999999999999999887642 39999999999998776 88888876 7889999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCc---HHHHHHHHHcCCce-EEEeeCCCCceeEeceeHHHHHH
Q 011841 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGKTI-DVYKTQDDREVARDFTYIDDVVK 347 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~v~v~Dva~ 347 (476)
.+|.++|.+++.+..+++++++++|++++|||+...... +..++..+..+... ..+ +++++.++|+|++|+|+
T Consensus 187 ~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~~~~~~~~~~~~~~~g~~~~~~~---g~~~~~~~~v~v~Dva~ 263 (381)
T 1n7h_A 187 ASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL---GNLQASRDWGFAGDYVE 263 (381)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEE---SCTTCEEECEEHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcchhHHHHHHHHHHHcCCCCeEEe---CCCCceeeeEEHHHHHH
Confidence 999999999999999899999999999999997654432 33455566667643 334 56788999999999999
Q ss_pred HHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcc--ceeecC-CCCCCCCcccccHHHHH
Q 011841 348 GCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK--KHVIRM-PRNGDVPYTHANVSLAY 424 (476)
Q Consensus 348 a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~--~~~~~~-~~~~~~~~~~~d~~ka~ 424 (476)
+++.+++++. . ++||+++++++|+.|+++.+.+.+|.+.. ....+. ....+.....+|++|++
T Consensus 264 a~~~~~~~~~--~------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 329 (381)
T 1n7h_A 264 AMWLMLQQEK--P------------DDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKAK 329 (381)
T ss_dssp HHHHHHTSSS--C------------CEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHHH
T ss_pred HHHHHHhCCC--C------------CeEEeeCCCCCcHHHHHHHHHHHcCCCcccccccCcccCCccccccccCCHHHHH
Confidence 9999998754 2 79999999999999999999999998642 112111 12344556678999999
Q ss_pred HhcCCCcccCHHHHHHHHHHHHHHHcCCC
Q 011841 425 KDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 425 ~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 453 (476)
++|||+|+++++++|+++++||+++.+..
T Consensus 330 ~~lG~~p~~~l~e~l~~~~~~~~~~~~~~ 358 (381)
T 1n7h_A 330 EVLGWKPQVGFEKLVKMMVDEDLELAKRE 358 (381)
T ss_dssp HHHCCCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCcccCCHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999987654
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=340.80 Aligned_cols=283 Identities=16% Similarity=0.149 Sum_probs=242.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||++|+++|+ +|++|++++|.. ..+.+|+.|.+++.+++++.++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~--------------------~~~~~D~~d~~~~~~~~~~~~~d~vi 59 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHS--------------------KEFCGDFSNPKGVAETVRKLRPDVIV 59 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTC--------------------SSSCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEecccc--------------------ccccccCCCHHHHHHHHHhcCCCEEE
Confidence 689999999999999999999 899999999843 13578999999999999885669999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+||.........+++..+++|+.++.+++++|++.++ +|||+||.++||.....+++|+++. .|.+.|+.+|.++|
T Consensus 60 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~vy~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 136 (299)
T 1n2s_A 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYSTDYVFPGTGDIPWQETDAT-SPLNVYGKTKLAGE 136 (299)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEEEGGGSCCCTTCCBCTTSCC-CCSSHHHHHHHHHH
T ss_pred ECcccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEecccEEeCCCCCCCCCCCCC-CCccHHHHHHHHHH
Confidence 99998776666788999999999999999999999885 7999999999998877789999876 78899999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG- 357 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~- 357 (476)
.+++++. .+++++||+++|||+.. .++..++..+..+.++.++ +++.++|+|++|+|++++.+++++.
T Consensus 137 ~~~~~~~----~~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~~~~ 205 (299)
T 1n2s_A 137 KALQDNC----PKHLIFRTSWVYAGKGN--NFAKTMLRLAKERQTLSVI-----NDQYGAPTGAELLADCTAHAIRVALN 205 (299)
T ss_dssp HHHHHHC----SSEEEEEECSEECSSSC--CHHHHHHHHHHHCSEEEEE-----CSCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC----CCeEEEeeeeecCCCcC--cHHHHHHHHHhcCCCEEee-----cCcccCCeeHHHHHHHHHHHHHHhcc
Confidence 9998864 48999999999999754 3667788888889888777 3578999999999999999998863
Q ss_pred -c-CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCc------cceeecCC----CCCCCCcccccHHHHHH
Q 011841 358 -K-STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA------KKHVIRMP----RNGDVPYTHANVSLAYK 425 (476)
Q Consensus 358 -~-~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~------~~~~~~~~----~~~~~~~~~~d~~ka~~ 425 (476)
. .+ ++||+++++++|+.|+++.+.+.+|.+. .+...+.. ...+.....+|++|+++
T Consensus 206 ~~~~~------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 273 (299)
T 1n2s_A 206 KPEVA------------GLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQR 273 (299)
T ss_dssp CGGGC------------EEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHH
T ss_pred ccccC------------ceEEEeCCCCCCHHHHHHHHHHHhCCCccccccccccccccccccCcCCCCCceeeeHHHHHH
Confidence 2 22 8999999999999999999999999762 23333321 12334567899999999
Q ss_pred hcCCCcccCHHHHHHHHHHHHHHH
Q 011841 426 DFGYKPTTDLAAGLRKFVKWYVSY 449 (476)
Q Consensus 426 ~LG~~p~~~l~e~l~~~v~~~~~~ 449 (476)
+|||+|+ +++|+|+++++||+++
T Consensus 274 ~lG~~p~-~~~~~l~~~~~~~~~~ 296 (299)
T 1n2s_A 274 NFDLILP-QWELGVKRMLTEMFTT 296 (299)
T ss_dssp HHTCCCC-BHHHHHHHHHHHHHSC
T ss_pred hcCCCCC-CHHHHHHHHHHHHHhc
Confidence 9999998 8999999999999754
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-42 Score=344.89 Aligned_cols=300 Identities=21% Similarity=0.349 Sum_probs=247.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+||||++|+++|+++| ++|++++|...... . ..+ .++. +.+|+.|.+.+++++++.
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~-----~~~--~~~~-~~~d~~~~~~~~~~~~~~~~ 113 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--F-----VNL--VDLN-IADYMDKEDFLIQIMAGEEF 113 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--G-----GGT--TTSC-CSEEEEHHHHHHHHHTTCCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--h-----hcc--cCce-EeeecCcHHHHHHHHhhccc
Confidence 456899999999999999999999999 99999998654210 0 011 1333 678999999999998752
Q ss_pred -CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHH
Q 011841 193 -PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYA 271 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (476)
++|+|||+||.... ...+++..+++|+.++.+++++|++.++ +||++||.++||.....+++|+++. .|.+.|+
T Consensus 114 ~~~d~Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~ 188 (357)
T 2x6t_A 114 GDVEAIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREYE-KPLNVFG 188 (357)
T ss_dssp SSCCEEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGCSCSSCCCSSGGGC-CCSSHHH
T ss_pred CCCCEEEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcchHHhCCCCCCCcCCcCCC-CCCChhH
Confidence 46999999998553 4567888999999999999999999886 8999999999998777788888876 7889999
Q ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC----CCcHHHHHHHHHcCCceEEEeeCCCCce-eEeceeHHHHH
Q 011841 272 ATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQDDREV-ARDFTYIDDVV 346 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~v~v~Dva 346 (476)
.+|.++|.+++.+.+++|+++++|||++||||+... ...+..++..+..++++.++ +++.+ .++|+|++|+|
T Consensus 189 ~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~v~Dva 265 (357)
T 2x6t_A 189 YSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF---EGSENFKRDFVYVGDVA 265 (357)
T ss_dssp HHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTCGGGSCHHHHHHHHHHTTCCCEEE---TTGGGCEECEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCCcccchHHHHHHHHHHcCCCcEEe---CCCCcceEccEEHHHHH
Confidence 999999999999998889999999999999997653 24667788888999988887 66788 99999999999
Q ss_pred HHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCC---CCCCcccccHHHH
Q 011841 347 KGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN---GDVPYTHANVSLA 423 (476)
Q Consensus 347 ~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~ka 423 (476)
++++.+++++. + ++||+++++++|+.|+++.+.+.+|.+ .+...+.+.. .......+|++|+
T Consensus 266 ~ai~~~~~~~~--~------------~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~k~ 330 (357)
T 2x6t_A 266 DVNLWFLENGV--S------------GIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNL 330 (357)
T ss_dssp HHHHHHHHHCC--C------------EEEEESCSCCEEHHHHHHHHHHHHTCC-CCEEECCCGGGTTSCCSBCCCCCHHH
T ss_pred HHHHHHHhcCC--C------------CeEEecCCCcccHHHHHHHHHHHcCCC-CceecCCCcccccccccccccCHHHH
Confidence 99999999876 2 999999999999999999999999987 4444444431 1234567899999
Q ss_pred HHhcCC-CcccCHHHHHHHHHHHHHHH
Q 011841 424 YKDFGY-KPTTDLAAGLRKFVKWYVSY 449 (476)
Q Consensus 424 ~~~LG~-~p~~~l~e~l~~~v~~~~~~ 449 (476)
++ ||| .|.++++|+|+++++||++.
T Consensus 331 ~~-lG~~~~~~~l~e~l~~~~~~~~~~ 356 (357)
T 2x6t_A 331 RA-AGYDKPFKTVAEGVTEYMAWLNRD 356 (357)
T ss_dssp HH-TTCCCCCCCHHHHHHHHHHHHC--
T ss_pred HH-cCCCCCCCCHHHHHHHHHHHHhhc
Confidence 86 999 78899999999999999654
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=341.67 Aligned_cols=293 Identities=18% Similarity=0.158 Sum_probs=236.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+|+||||||+||||++|+++|+++|++|++++|....... +...+++++.+|++|.+++.++++++ |+
T Consensus 12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------l~~~~~~~~~~Dl~d~~~~~~~~~~~--d~ 80 (342)
T 2x4g_A 12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR---------LAYLEPECRVAEMLDHAGLERALRGL--DG 80 (342)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG---------GGGGCCEEEECCTTCHHHHHHHTTTC--SE
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh---------hccCCeEEEEecCCCHHHHHHHHcCC--CE
Confidence 34799999999999999999999999999999996543211 12237899999999999999999976 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCC--CCCCCCCCCCCC----CChH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ--VPFSESHRTDQP----ASLY 270 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~--~~~~E~~~~~~p----~~~Y 270 (476)
|||+||... ....+++..+++|+.++.+++++|++.+++ +|||+||.++|+.... .+ +|+++. .| .+.|
T Consensus 81 vih~a~~~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~-~E~~~~-~p~~~~~~~Y 155 (342)
T 2x4g_A 81 VIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVGSAYAMPRHPQGLPG-HEGLFY-DSLPSGKSSY 155 (342)
T ss_dssp EEEC--------------CHHHHHHHHHHHHHHHHHHHTCS-CEEEECCGGGSCCCTTSSCB-CTTCCC-SSCCTTSCHH
T ss_pred EEECCccCc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHhhCcCCCCCCC-CCCCCC-CccccccChH
Confidence 999999743 234567789999999999999999999876 9999999999987654 34 777766 66 8899
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCC-CCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG-RPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
+.+|.++|.+++++++. |+++++|||+.||||+. .+. +..++..+..+..+.+ +++.++|+|++|+|+++
T Consensus 156 ~~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~i~v~Dva~~~ 226 (342)
T 2x4g_A 156 VLCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGPT--TGRVITAIGNGEMTHY------VAGQRNVIDAAEAGRGL 226 (342)
T ss_dssp HHHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSCS--TTHHHHHHHTTCCCEE------ECCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCcccc--HHHHHHHHHcCCCccc------cCCCcceeeHHHHHHHH
Confidence 99999999999999887 99999999999999976 322 4567777888876654 35788999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCC--------------------
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR-------------------- 409 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~-------------------- 409 (476)
+.+++++.. + ++||++++. +|+.|+++.+.+.+|.+..+ ..|...
T Consensus 227 ~~~~~~~~~-g------------~~~~v~~~~-~s~~e~~~~i~~~~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ 291 (342)
T 2x4g_A 227 LMALERGRI-G------------ERYLLTGHN-LEMADLTRRIAELLGQPAPQ-PMSMAMARALATLGRLRYRVSGQLPL 291 (342)
T ss_dssp HHHHHHSCT-T------------CEEEECCEE-EEHHHHHHHHHHHHTCCCCE-EECHHHHHHHHHHHHC----------
T ss_pred HHHHhCCCC-C------------ceEEEcCCc-ccHHHHHHHHHHHhCCCCCC-cCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 999988654 2 899999999 99999999999999987665 333210
Q ss_pred -CCC-----CCcccccHHHHHHhcCC-CcccCHHHHHHHHHHHHHHHc
Q 011841 410 -NGD-----VPYTHANVSLAYKDFGY-KPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 410 -~~~-----~~~~~~d~~ka~~~LG~-~p~~~l~e~l~~~v~~~~~~~ 450 (476)
..+ .....+|++|++++||| +| ++++++|+++++||+++.
T Consensus 292 ~~~~~~~~~~~~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~~g 338 (342)
T 2x4g_A 292 LDETAIEVMAGGQFLDGRKAREELGFFST-TALDDTLLRAIDWFRDNG 338 (342)
T ss_dssp ------CCTTCCCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHhcCcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHHcC
Confidence 001 23567899999999999 99 899999999999998764
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=334.06 Aligned_cols=278 Identities=18% Similarity=0.169 Sum_probs=239.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
...|+||||||+||||++|+++|+++|++|++++|. .+|++|.+++.+++++.++|
T Consensus 10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~------------------------~~Dl~d~~~~~~~~~~~~~d 65 (292)
T 1vl0_A 10 HHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ------------------------DLDITNVLAVNKFFNEKKPN 65 (292)
T ss_dssp --CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT------------------------TCCTTCHHHHHHHHHHHCCS
T ss_pred cccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc------------------------cCCCCCHHHHHHHHHhcCCC
Confidence 455899999999999999999999999999999983 37999999999999854569
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
+|||+||.........+++..+++|+.++.+++++|++.++ +|||+||.++|+.....+++|+++. .|.+.|+.+|.
T Consensus 66 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~SS~~v~~~~~~~~~~E~~~~-~~~~~Y~~sK~ 142 (292)
T 1vl0_A 66 VVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQISTDYVFDGEAKEPITEFDEV-NPQSAYGKTKL 142 (292)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCSCCSSCBCTTSCC-CCCSHHHHHHH
T ss_pred EEEECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEechHHeECCCCCCCCCCCCCC-CCccHHHHHHH
Confidence 99999998776666788899999999999999999999885 8999999999998777789998876 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
++|.+++++ +.++++|||+.|||| . ..++..++..+..+.++.++ +++.++|+|++|+|++++.++++
T Consensus 143 ~~E~~~~~~----~~~~~~lR~~~v~G~-~--~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~~~~~~~~~ 210 (292)
T 1vl0_A 143 EGENFVKAL----NPKYYIVRTAWLYGD-G--NNFVKTMINLGKTHDELKVV-----HDQVGTPTSTVDLARVVLKVIDE 210 (292)
T ss_dssp HHHHHHHHH----CSSEEEEEECSEESS-S--SCHHHHHHHHHHHCSEEEEE-----SSCEECCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh----CCCeEEEeeeeeeCC-C--cChHHHHHHHHhcCCcEEee-----cCeeeCCccHHHHHHHHHHHHhc
Confidence 999999885 447999999999999 3 23566777778888888777 45789999999999999999988
Q ss_pred cCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCC----CCCCCcccccHHHHHHhcCCCc
Q 011841 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR----NGDVPYTHANVSLAYKDFGYKP 431 (476)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~----~~~~~~~~~d~~ka~~~LG~~p 431 (476)
+ .+ ++||+++++++|+.|+++.+.+.+|.+..+...+... ..+.....+|++|++++|||+|
T Consensus 211 ~--~~------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p 276 (292)
T 1vl0_A 211 K--NY------------GTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDIT 276 (292)
T ss_dssp T--CC------------EEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCC
T ss_pred C--CC------------cEEEecCCCCccHHHHHHHHHHHhCCCCceeeccccccCcccCCCccccccHHHHHHHcCCCC
Confidence 6 22 9999999999999999999999999876555444321 2344567799999999999999
Q ss_pred ccCHHHHHHHHHHHHH
Q 011841 432 TTDLAAGLRKFVKWYV 447 (476)
Q Consensus 432 ~~~l~e~l~~~v~~~~ 447 (476)
+ +++++|+++++||+
T Consensus 277 ~-~~~~~l~~~~~~~~ 291 (292)
T 1vl0_A 277 R-EWKESLKEYIDLLQ 291 (292)
T ss_dssp C-BHHHHHHHHHHHHT
T ss_pred C-CHHHHHHHHHHHhc
Confidence 9 99999999999995
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=340.19 Aligned_cols=301 Identities=20% Similarity=0.266 Sum_probs=239.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
+|+||||||+||||++|+++|+++ |++|++++|..... . .. .+++++.+|++|.+++.++++..++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--~---~~------~~~~~~~~D~~d~~~~~~~~~~~~~d 70 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNT--D---VV------NSGPFEVVNALDFNQIEHLVEVHKIT 70 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSC--H---HH------HSSCEEECCTTCHHHHHHHHHHTTCC
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccc--c---cc------CCCceEEecCCCHHHHHHHHhhcCCC
Confidence 478999999999999999999999 89999999965431 1 11 25788999999999999999865669
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCC-CCCCCCCCCCCCCChHHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ-VPFSESHRTDQPASLYAATK 274 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~-~~~~E~~~~~~p~~~Y~~sK 274 (476)
+|||+||.... ....+++..+++|+.++.+++++|++.+++ +|||+||.++|+.... .+.+|+++. .|.+.|+.+|
T Consensus 71 ~vih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~-~~~~~Y~~sK 147 (312)
T 2yy7_A 71 DIYLMAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIAVFGPTTPKENTPQYTIM-EPSTVYGISK 147 (312)
T ss_dssp EEEECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGGGCCTTSCSSSBCSSCBC-CCCSHHHHHH
T ss_pred EEEECCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHHhCCCCCCCCccccCcC-CCCchhHHHH
Confidence 99999997543 245678899999999999999999998876 9999999999987543 456666654 7889999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC-----CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
.++|.+++.+.+++|+++++|||+.||||+..+. .....+. ..+.++++.++ +++++.++|+|++|+|+++
T Consensus 148 ~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~ 223 (312)
T 2yy7_A 148 QAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGGGTTDYAVDIFY-KAIADKKYECF---LSSETKMPMMYMDDAIDAT 223 (312)
T ss_dssp HHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCSCTTTHHHHHHH-HHHHTSEEEES---SCTTCCEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCCchhhhHHHHHH-HHHcCCCeEEe---cCCCceeeeeeHHHHHHHH
Confidence 9999999999888899999999999999764332 1333343 44445556555 5678899999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCC--CCCCcccccHHHHHHhc
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN--GDVPYTHANVSLAYKDF 427 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~--~~~~~~~~d~~ka~~~L 427 (476)
+.+++++....+ ++ ++||+++ +.+|+.|+++.+.+.+|. ..+...+.... .......+|++|++++|
T Consensus 224 ~~~~~~~~~~~~-~~--------~~~ni~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~l 292 (312)
T 2yy7_A 224 INIMKAPVEKIK-IH--------SSYNLAA-MSFTPTEIANEIKKHIPE-FTITYEPDFRQKIADSWPASIDDSQAREDW 292 (312)
T ss_dssp HHHHHSCGGGCC-CS--------SCEECCS-EEECHHHHHHHHHTTCTT-CEEEECCCTHHHHHTTSCSSBCCHHHHHHH
T ss_pred HHHHhCcccccc-cC--------ceEEeCC-CccCHHHHHHHHHHHCCC-CceEeccCccccccccccccCCHHHHHHHc
Confidence 999988654210 01 7899997 889999999999999983 22222221000 11223468999999999
Q ss_pred CCCcccCHHHHHHHHHHHHH
Q 011841 428 GYKPTTDLAAGLRKFVKWYV 447 (476)
Q Consensus 428 G~~p~~~l~e~l~~~v~~~~ 447 (476)
||+|+++++|+|+++++||+
T Consensus 293 G~~p~~~l~~~l~~~~~~~k 312 (312)
T 2yy7_A 293 DWKHTFDLESMTKDMIEHLS 312 (312)
T ss_dssp CCCCCCCHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999999984
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=339.06 Aligned_cols=296 Identities=21% Similarity=0.352 Sum_probs=226.5
Q ss_pred EEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---Ccc
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---PFT 195 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---~~d 195 (476)
+||||||+||||++|+++|+++| ++|++++|...... .... . ++. +.+|+.|.+.+++++++. ++|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~-----~--~~~-~~~d~~~~~~~~~~~~~~~~~~~d 70 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNL-----V--DLN-IADYMDKEDFLIQIMAGEEFGDVE 70 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHH-----H--TSC-CSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhc-----C--cce-eccccccHHHHHHHHhccccCCCc
Confidence 48999999999999999999999 99999998654211 1111 1 233 778999999999999862 469
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
+|||+||.... ...+++..+++|+.++.+++++|++.++ +||++||.++||.....+++|+++. .|.+.|+.+|.
T Consensus 71 ~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~E~~~~-~p~~~Y~~sK~ 145 (310)
T 1eq2_A 71 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREYE-KPLNVYGYSKF 145 (310)
T ss_dssp EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCSSGGGC-CCSSHHHHHHH
T ss_pred EEEECcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeHHHhCCCCCCCCCCCCCC-CCCChhHHHHH
Confidence 99999998554 4567889999999999999999999886 8999999999998776678888866 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC----CCcHHHHHHHHHcCCceEEEeeCCCCce-eEeceeHHHHHHHHH
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQDDREV-ARDFTYIDDVVKGCV 350 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~v~v~Dva~a~~ 350 (476)
++|.+++++.+++|+++++|||++||||+... ...+..+++.+.+++++.++ +++.+ .++|+|++|+|++++
T Consensus 146 ~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~i~v~Dva~~~~ 222 (310)
T 1eq2_A 146 LFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLF---EGSENFKRDFVYVGDVADVNL 222 (310)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC----------------CBCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCCCccchHHHHHHHHHHcCCCcEEe---cCCCcceEccEEHHHHHHHHH
Confidence 99999999988889999999999999997642 34667788888999888777 56778 899999999999999
Q ss_pred HHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCC---CCCCcccccHHHHHHhc
Q 011841 351 GALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN---GDVPYTHANVSLAYKDF 427 (476)
Q Consensus 351 ~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~ka~~~L 427 (476)
.+++++. + ++||+++++++|+.|+++.+.+.+|.+ .+...+.+.. ........|++|+++ |
T Consensus 223 ~~~~~~~--~------------~~~~i~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l 286 (310)
T 1eq2_A 223 WFLENGV--S------------GIFNLGTGRAESFQAVADATLAYHKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRA-A 286 (310)
T ss_dssp HHHHHCC--C------------EEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHH-T
T ss_pred HHHhcCC--C------------CeEEEeCCCccCHHHHHHHHHHHcCCC-CceeCCCChhhhcccccccccchHHHHh-c
Confidence 9999876 2 999999999999999999999999987 3333443331 123456788999976 9
Q ss_pred CC-CcccCHHHHHHHHHHHHHHH
Q 011841 428 GY-KPTTDLAAGLRKFVKWYVSY 449 (476)
Q Consensus 428 G~-~p~~~l~e~l~~~v~~~~~~ 449 (476)
|| +|.++++|+|+++++||++.
T Consensus 287 G~~~~~~~l~~~l~~~~~~~~~~ 309 (310)
T 1eq2_A 287 GYDKPFKTVAEGVTEYMAWLNRD 309 (310)
T ss_dssp TCCCCCCCHHHHHHHHHHHTC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 99 78899999999999999654
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-42 Score=342.69 Aligned_cols=296 Identities=23% Similarity=0.327 Sum_probs=240.7
Q ss_pred CCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
+...++|+||||||+||||++|+++|+++|++|++++|......+.. ....+++++.+|++|.+++.++++..
T Consensus 15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-------~~l~~v~~~~~Dl~d~~~~~~~~~~~ 87 (330)
T 2pzm_A 15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVL-------PPVAGLSVIEGSVTDAGLLERAFDSF 87 (330)
T ss_dssp CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGS-------CSCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhh-------hccCCceEEEeeCCCHHHHHHHHhhc
Confidence 44467899999999999999999999999999999999654322100 01147899999999999999999843
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCC--CCCCCCCCCCCCChH
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQV--PFSESHRTDQPASLY 270 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~--~~~E~~~~~~p~~~Y 270 (476)
++|+||||||..... +..+++ +++|+.++.+++++|.+.+++ +||++||.++|+..... +++|++ .+.+.|
T Consensus 88 ~~D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~-~iV~~SS~~~~~~~~~~~~~~~E~~---~~~~~Y 160 (330)
T 2pzm_A 88 KPTHVVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVK-RLLNFQTALCYGRPATVPIPIDSPT---APFTSY 160 (330)
T ss_dssp CCSEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCS-EEEEEEEGGGGCSCSSSSBCTTCCC---CCCSHH
T ss_pred CCCEEEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCccCCCCcCCCC---CCCChH
Confidence 459999999985542 223333 899999999999999998875 99999999999876544 777776 567899
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHH-HH
Q 011841 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK-GC 349 (476)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~-a~ 349 (476)
+.+|.++|.+++.+ ++++++|||+++|||+. ...++..++..+..+. .++ +++. .++|+|++|+|+ ++
T Consensus 161 ~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~-~~~~~~~~~~~~~~~~--~~~---~~~~-~~~~i~~~Dva~~a~ 229 (330)
T 2pzm_A 161 GISKTAGEAFLMMS----DVPVVSLRLANVTGPRL-AIGPIPTFYKRLKAGQ--KCF---CSDT-VRDFLDMSDFLAIAD 229 (330)
T ss_dssp HHHHHHHHHHHHTC----SSCEEEEEECEEECTTC-CSSHHHHHHHHHHTTC--CCC---EESC-EECEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc----CCCEEEEeeeeeECcCC-CCCHHHHHHHHHHcCC--EEe---CCCC-EecceeHHHHHHHHH
Confidence 99999999999886 89999999999999986 3445666777777776 333 2355 889999999999 99
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHH-----H
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLA-----Y 424 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka-----~ 424 (476)
+.+++++. + ++||++++.++++.|+++.+.+.+|.+ .+...+... +.....+|++|+ +
T Consensus 230 ~~~~~~~~--g------------~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~--~~~~~~~d~~k~~~~~l~ 292 (330)
T 2pzm_A 230 LSLQEGRP--T------------GVFNVSTGEGHSIKEVFDVVLDYVGAT-LAEPVPVVA--PGADDVPSVVLDPSKTET 292 (330)
T ss_dssp HHTSTTCC--C------------EEEEESCSCCEEHHHHHHHHHHHHTCC-CSSCCCEEC--CCTTSCSEECBCCHHHHH
T ss_pred HHHhhcCC--C------------CEEEeCCCCCCCHHHHHHHHHHHhCCC-CceeCCCCc--chhhccCCHHHHhhchHH
Confidence 99998754 2 999999999999999999999999987 444333222 455677888888 7
Q ss_pred HhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 425 KDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 425 ~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
+ |||+|+++++++|+++++||+++..
T Consensus 293 ~-lG~~p~~~~~~~l~~~~~~~~~~~~ 318 (330)
T 2pzm_A 293 E-FGWKAKVDFKDTITGQLAWYDKYGV 318 (330)
T ss_dssp H-HCCCCCCCHHHHHHHHHHHHHHHCS
T ss_pred H-cCCcccCCHHHHHHHHHHHHHhhCc
Confidence 7 9999999999999999999998754
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=337.81 Aligned_cols=293 Identities=23% Similarity=0.302 Sum_probs=237.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++|+||||||+||||++|+++|+++|++|++++|......+.. ....+++++.+|++|.+++.+++++.++|
T Consensus 19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l-------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D 91 (333)
T 2q1w_A 19 SHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHL-------KDHPNLTFVEGSIADHALVNQLIGDLQPD 91 (333)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGS-------CCCTTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhH-------hhcCCceEEEEeCCCHHHHHHHHhccCCc
Confidence 46689999999999999999999999999999999654321111 01147899999999999999999884559
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC----CCCCCCCCCCCCCCCCC-ChH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG----LNTQVPFSESHRTDQPA-SLY 270 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg----~~~~~~~~E~~~~~~p~-~~Y 270 (476)
+|||+||..... ...+++ +++|+.++.+++++|++.+++ +||++||.++|| .... +++|++ .|. +.|
T Consensus 92 ~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~-~iV~~SS~~~~g~~~~~~~~-~~~E~~---~p~~~~Y 163 (333)
T 2q1w_A 92 AVVHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVG-RFVYFQTALCYGVKPIQQPV-RLDHPR---NPANSSY 163 (333)
T ss_dssp EEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGCSCCCSSSB-CTTSCC---CCTTCHH
T ss_pred EEEECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCC-EEEEECcHHHhCCCcccCCC-CcCCCC---CCCCCch
Confidence 999999985543 223333 899999999999999998875 999999999998 5544 788877 456 899
Q ss_pred HHHHHHHHHHHHH-HHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 271 AATKKAGEEIAHT-YNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 271 ~~sK~~~E~~~~~-~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
+.+|.++|.+++. +. ++++|||+++|||+ .....+..+++.+..+. .++ + +...++|+|++|+|+++
T Consensus 164 ~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~-~~~~~~~~~~~~~~~~~--~~~---~-~~~~~~~i~v~Dva~ai 231 (333)
T 2q1w_A 164 AISKSANEDYLEYSGL-----DFVTFRLANVVGPR-NVSGPLPIFFQRLSEGK--KCF---V-TKARRDFVFVKDLARAT 231 (333)
T ss_dssp HHHHHHHHHHHHHHTC-----CEEEEEESEEESTT-CCSSHHHHHHHHHHTTC--CCE---E-EECEECEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhC-----CeEEEeeceEECcC-CcCcHHHHHHHHHHcCC--eee---C-CCceEeeEEHHHHHHHH
Confidence 9999999999988 65 78999999999998 33456677788887776 334 3 56789999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCC---CCCCcccccHHHHHHh
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN---GDVPYTHANVSLAYKD 426 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~---~~~~~~~~d~~ka~~~ 426 (476)
+.+++++. + ++||++++..+|+.|+++.+.+.+|.+ .+...+.+.. .......+|++|+++.
T Consensus 232 ~~~~~~~~--g------------~~~~v~~~~~~s~~e~~~~i~~~~g~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~ 296 (333)
T 2q1w_A 232 VRAVDGVG--H------------GAYHFSSGTDVAIKELYDAVVEAMALP-SYPEPEIRELGPDDAPSILLDPSRTIQDF 296 (333)
T ss_dssp HHHHTTCC--C------------EEEECSCSCCEEHHHHHHHHHHHTTCS-SCCCCEEEECCTTSCCCCCBCCHHHHHHH
T ss_pred HHHHhcCC--C------------CEEEeCCCCCccHHHHHHHHHHHhCCC-CceeCCCCCcccccccccccCCHHHHHhc
Confidence 99998765 2 999999999999999999999999987 4443332210 1125577999999998
Q ss_pred cCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 427 FGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 427 LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
||+|.++++++|+++++||+++..
T Consensus 297 -G~~p~~~~~~~l~~~~~~~~~~~~ 320 (333)
T 2q1w_A 297 -GKIEFTPLKETVAAAVAYFREYGV 320 (333)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHHHCC
T ss_pred -CCCcCCCHHHHHHHHHHHHHHHCC
Confidence 999999999999999999998753
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-42 Score=336.48 Aligned_cols=278 Identities=17% Similarity=0.172 Sum_probs=231.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++|+||||| +||||++|+++|+++|++|++++|..+.. ..+++++.+|+.|.+.+.+++++ ++|+
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~-------------~~~~~~~~~Dl~d~~~~~~~~~~-~~d~ 66 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM-------------PAGVQTLIADVTRPDTLASIVHL-RPEI 66 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC-------------CTTCCEEECCTTCGGGCTTGGGG-CCSE
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc-------------ccCCceEEccCCChHHHHHhhcC-CCCE
Confidence 357999999 59999999999999999999999965432 24889999999999999999987 4599
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
|||+||. ...+++..+++|+.++.+++++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.+|.+
T Consensus 67 vih~a~~-----~~~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~~ 139 (286)
T 3gpi_A 67 LVYCVAA-----SEYSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVSSTGVYGQEVEEWLDEDTPP-IAKDFSGKRMLE 139 (286)
T ss_dssp EEECHHH-----HHHC-----CCSHHHHHHHHHHTTTSCCC-EEEEEEEGGGCCCCCSSEECTTSCC-CCCSHHHHHHHH
T ss_pred EEEeCCC-----CCCCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEcccEEEcCCCCCCCCCCCCC-CCCChhhHHHHH
Confidence 9999986 23567788899999999999999998876 9999999999999888888999887 788999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
+|.+ +++ +++++|||++||||+.. .++..+.+ +.. . +++++.++|+|++|+|++++.+++++
T Consensus 140 ~E~~-~~~-----~~~~ilR~~~v~G~~~~------~~~~~~~~-~~~--~---~~~~~~~~~i~v~Dva~~~~~~~~~~ 201 (286)
T 3gpi_A 140 AEAL-LAA-----YSSTILRFSGIYGPGRL------RMIRQAQT-PEQ--W---PARNAWTNRIHRDDGAAFIAYLIQQR 201 (286)
T ss_dssp HHHH-GGG-----SSEEEEEECEEEBTTBC------HHHHHTTC-GGG--S---CSSBCEECEEEHHHHHHHHHHHHHHH
T ss_pred HHHH-Hhc-----CCeEEEecccccCCCch------hHHHHHHh-ccc--C---CCcCceeEEEEHHHHHHHHHHHHhhh
Confidence 9998 653 89999999999999754 34555555 332 2 56788999999999999999999986
Q ss_pred C--cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCccc-
Q 011841 357 G--KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTT- 433 (476)
Q Consensus 357 ~--~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~- 433 (476)
. ..+ ++||+++++++|+.|+++.+.+.+|.+..+...+ .+.....+|++|++ +|||+|++
T Consensus 202 ~~~~~~------------~~~~~~~~~~~s~~e~~~~i~~~~g~~~~~~~~~----~~~~~~~~d~~k~~-~lG~~p~~~ 264 (286)
T 3gpi_A 202 SHAVPE------------RLYIVTDNQPLPVHDLLRWLADRQGIAYPAGATP----PVQGNKKLSNARLL-ASGYQLIYP 264 (286)
T ss_dssp TTSCCC------------SEEEECCSCCEEHHHHHHHHHHHTTCCCCCSCCC----CBCSSCEECCHHHH-HTTCCCSSC
T ss_pred ccCCCC------------ceEEEeCCCCCCHHHHHHHHHHHcCCCCCCCCCc----ccCCCeEeeHHHHH-HcCCCCcCC
Confidence 3 222 8999999999999999999999999877554332 45567789999998 89999999
Q ss_pred CHHHHHHHHHHHHHHHcC
Q 011841 434 DLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 434 ~l~e~l~~~v~~~~~~~~ 451 (476)
+++|+|+++++|+....+
T Consensus 265 ~l~e~l~~~~~~~~~~~~ 282 (286)
T 3gpi_A 265 DYVSGYGALLAAMREGHH 282 (286)
T ss_dssp SHHHHHHHHHHHHTC---
T ss_pred cHHHHHHHHHHHHhcccc
Confidence 699999999999966544
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=330.47 Aligned_cols=302 Identities=18% Similarity=0.232 Sum_probs=239.1
Q ss_pred EEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+||||||+||||++|+++|+++ |++|++++|...... +++++.+|++|.+++.++++..++|+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~--------------~~~~~~~D~~d~~~~~~~~~~~~~d~v 66 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG--------------GIKFITLDVSNRDEIDRAVEKYSIDAI 66 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT--------------TCCEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc--------------CceEEEecCCCHHHHHHHHhhcCCcEE
Confidence 4899999999999999999999 899999998654211 567899999999999999985566999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCC-CCCCCCCCCCCCCCChHHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVPFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~-~~~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
||+||.... ....+++..+++|+.++.+++++|++.+++ +||++||.++|+... ..+..|+++. .|.+.|+.+|.+
T Consensus 67 ih~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~-~p~~~Y~~sK~~ 143 (317)
T 3ajr_A 67 FHLAGILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPSTIGVFGPETPKNKVPSITIT-RPRTMFGVTKIA 143 (317)
T ss_dssp EECCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCTTSCSSSBCSSSCC-CCCSHHHHHHHH
T ss_pred EECCcccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCCCCCCccccccC-CCCchHHHHHHH
Confidence 999997443 244678889999999999999999999876 999999999998753 3355666554 788999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHH
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~ 352 (476)
+|.+++.+.+++|+++++|||+.+||+...+. .....++...+.++.+.++ +++++.++|+|++|+|++++.+
T Consensus 144 ~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~a~~~~ 220 (317)
T 3ajr_A 144 AELLGQYYYEKFGLDVRSLRYPGIISYKAEPTAGTTDYAVEIFYYAVKREKYKCY---LAPNRALPMMYMPDALKALVDL 220 (317)
T ss_dssp HHHHHHHHHHHHCCEEEEEEECEEECSSSCCCSCSSTHHHHHHHHHHTTCCEEEC---SCTTCCEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEecCcEeccCCCCCCcchhHHHHHHHHHHhCCCceee---cCccceeeeeEHHHHHHHHHHH
Confidence 99999999888899999999999999754321 1222333445555566555 5577889999999999999999
Q ss_pred HhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCC--CCCCCcccccHHHHHHhcCCC
Q 011841 353 LDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR--NGDVPYTHANVSLAYKDFGYK 430 (476)
Q Consensus 353 l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~--~~~~~~~~~d~~ka~~~LG~~ 430 (476)
++++......+ ++||+++ ..+|+.|+++.+.+.+|. ..+...+... ........+|++|++++|||+
T Consensus 221 l~~~~~~~~~g---------~~~~i~~-~~~s~~e~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~ 289 (317)
T 3ajr_A 221 YEADRDKLVLR---------NGYNVTA-YTFTPSELYSKIKERIPE-FEIEYKEDFRDKIAATWPESLDSSEASNEWGFS 289 (317)
T ss_dssp HHCCGGGCSSC---------SCEECCS-EEECHHHHHHHHHTTCCS-CCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCC
T ss_pred HhCCccccccC---------ceEecCC-ccccHHHHHHHHHHHCCc-cccccccccchhhccccccccCHHHHHHHcCCC
Confidence 98765321101 7899987 579999999999999983 2222222100 011223468999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHcCC
Q 011841 431 PTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 431 p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
|+++++++|+++++||++....
T Consensus 290 p~~~~~~~l~~~~~~~~~~~~~ 311 (317)
T 3ajr_A 290 IEYDLDRTIDDMIDHISEKLGI 311 (317)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999988764
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=333.34 Aligned_cols=291 Identities=18% Similarity=0.197 Sum_probs=212.3
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+|+||||||+||||++|+++|+++|++|++++|.... ++ ++.+|++|.+++.+++++.++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------------~~--~~~~Dl~d~~~~~~~~~~~~~d~v 64 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR---------------PK--FEQVNLLDSNAVHHIIHDFQPHVI 64 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CHHHHHHHCCSEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC---------------CC--eEEecCCCHHHHHHHHHhhCCCEE
Confidence 5799999999999999999999999999999984321 12 788999999999999987567999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
||+||......+..+++..+++|+.++.+++++|++.+. +|||+||.++|+. ...+++|+++. .|.+.|+.+|.++
T Consensus 65 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~~~-~~~~~~E~~~~-~~~~~Y~~sK~~~ 140 (315)
T 2ydy_A 65 VHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYISSDYVFDG-TNPPYREEDIP-APLNLYGKTKLDG 140 (315)
T ss_dssp EECC-------------------CHHHHHHHHHHHHHTC--EEEEEEEGGGSCS-SSCSBCTTSCC-CCCSHHHHHHHHH
T ss_pred EECCcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEchHHHcCC-CCCCCCCCCCC-CCcCHHHHHHHHH
Confidence 999998665555677888999999999999999999874 8999999999998 55688888876 7889999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeeCcccCCCCCCC-CcHHHHHHHHH-cCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-MAYFFFTKDIL-QGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
|.+++.+ ++++++|||+.||||..... .++..++..+. .+.++.+. +++.++|+|++|+|++++.++++
T Consensus 141 e~~~~~~----~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~Dva~a~~~~~~~ 211 (315)
T 2ydy_A 141 EKAVLEN----NLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMD-----HWQQRFPTHVKDVATVCRQLAEK 211 (315)
T ss_dssp HHHHHHH----CTTCEEEEECSEECSCSSGGGSTTGGGHHHHHCCSSCEEEE-----CSSBBCCEEHHHHHHHHHHHHHH
T ss_pred HHHHHHh----CCCeEEEeeeeeeCCCCcccccHHHHHHHHHHhcCCCeeec-----cCceECcEEHHHHHHHHHHHHHh
Confidence 9999885 67889999999999976521 23445666677 77777665 46778999999999999999987
Q ss_pred cC--cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcc-ceeecC-CC--CCCCCcccccHHHHHHhcCC
Q 011841 356 AG--KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK-KHVIRM-PR--NGDVPYTHANVSLAYKDFGY 429 (476)
Q Consensus 356 ~~--~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~-~~~~~~-~~--~~~~~~~~~d~~ka~~~LG~ 429 (476)
+. ...+ ++||+++++++|+.|+++.+.+.+|.+.. +...+. +. ..+.....+|++|++++ ||
T Consensus 212 ~~~~~~~~-----------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~-G~ 279 (315)
T 2ydy_A 212 RMLDPSIK-----------GTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETL-GI 279 (315)
T ss_dssp HHTCTTCC-----------EEEECCCSCCBCHHHHHHHHHHHTTCCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHT-TC
T ss_pred hccccCCC-----------CeEEEcCCCcccHHHHHHHHHHHhCCChhheeccccccccccCCCcccccchHHHHhc-CC
Confidence 51 1122 89999999999999999999999998764 333332 21 22345677999999997 99
Q ss_pred CcccCHHHHHHHHHHHHHHHc
Q 011841 430 KPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 430 ~p~~~l~e~l~~~v~~~~~~~ 450 (476)
+|.++++++|+++++||+++.
T Consensus 280 ~p~~~~~~~l~~~~~~~~~~~ 300 (315)
T 2ydy_A 280 GQRTPFRIGIKESLWPFLIDK 300 (315)
T ss_dssp CCCCCHHHHHHHHHGGGCC--
T ss_pred CCCCCHHHHHHHHHHHHccch
Confidence 999999999999999997653
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=360.53 Aligned_cols=311 Identities=22% Similarity=0.345 Sum_probs=257.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH-HHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL-LTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-l~~~~~~~~ 193 (476)
.++|+||||||+||||++|+++|+++ |++|++++|....... .....+++++.+|++|.++ ++++++++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~--------~~~~~~v~~v~~Dl~d~~~~~~~~~~~~- 383 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR--------FLNHPHFHFVEGDISIHSEWIEYHVKKC- 383 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGG--------GTTCTTEEEEECCTTTCHHHHHHHHHHC-
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhh--------hccCCceEEEECCCCCcHHHHHHhhcCC-
Confidence 35689999999999999999999998 8999999997643221 1224589999999999764 78888876
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCC------CCCC
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT------DQPA 267 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~------~~p~ 267 (476)
|+|||+||.........++...+++|+.++.+++++|++.+ + +|||+||.++||.....+++|+++. ..|.
T Consensus 384 -D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~-r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~ 460 (660)
T 1z7e_A 384 -DVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-K-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPR 460 (660)
T ss_dssp -SEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-C-EEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTT
T ss_pred -CEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC-C-EEEEEecHHHcCCCCCcccCCCccccccCcccCCC
Confidence 99999999876555567888999999999999999999988 4 9999999999998777778888752 2456
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC--------CCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
+.|+.+|.++|.+++.+++++|++++++||++||||+... ...+..++..+.++.++.++ +++++.++|
T Consensus 461 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~g~~~~~~ 537 (660)
T 1z7e_A 461 WIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCF 537 (660)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHHHTTTCSCHHHHHHHHHHHTCCEEEE---GGGCCEEEC
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCccccccccccccchHHHHHHHHHcCCCcEEe---CCCCeEEEE
Confidence 6899999999999999988889999999999999997642 34567788888999998887 567889999
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC-cccHHHHHHHHHHHhCCCccceeecCC---------
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS-PVPVGRLVSILENLLNTKAKKHVIRMP--------- 408 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~-~vt~~el~~~l~~~~g~~~~~~~~~~~--------- 408 (476)
+|++|+|++++.+++++.. ..| ++||+++++ ++|+.|+++.+.+.+|.+......+..
T Consensus 538 i~v~Dva~ai~~~l~~~~~~~~g-----------~~~ni~~~~~~~s~~el~~~i~~~~g~~~~~~~~p~~~~~~~~~~~ 606 (660)
T 1z7e_A 538 TDIRDGIEALYRIIENAGNRCDG-----------EIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESS 606 (660)
T ss_dssp EEHHHHHHHHHHHHHCGGGTTTT-----------EEEEECCGGGEEEHHHHHHHHHHHHHHCTTGGGSCCCCCEEEECTH
T ss_pred EEHHHHHHHHHHHHhCccccCCC-----------eEEEECCCCCCcCHHHHHHHHHHHhcCCCcccccCccccccchhcc
Confidence 9999999999999987642 122 899999986 899999999999999875432222211
Q ss_pred -----CCCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 409 -----RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 409 -----~~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
...+.....+|++|++++|||+|+++++++|+++++||+++...
T Consensus 607 ~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~~ 655 (660)
T 1z7e_A 607 SYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 655 (660)
T ss_dssp HHHCTTCCCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSCC
T ss_pred ccccccccchhhcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhccc
Confidence 11234556789999999999999999999999999999887653
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=359.40 Aligned_cols=325 Identities=26% Similarity=0.350 Sum_probs=250.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++|+||||||+||||++|+++|+++|++|++++|............. .....+++++.+|++|.+++.++++..++|
T Consensus 9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~--~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D 86 (699)
T 1z45_A 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLE--VLTKHHIPFYEVDLCDRKGLEKVFKEYKID 86 (699)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHH--HHHTSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHh--hccCCceEEEEcCCCCHHHHHHHHHhCCCC
Confidence 456899999999999999999999999999999997654333222221 122457899999999999999999855669
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCC----CCCCCCCCCCCCCCChHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT----QVPFSESHRTDQPASLYA 271 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~----~~~~~E~~~~~~p~~~Y~ 271 (476)
+|||+||........+++...+++|+.++.+|+++|++.+++ +||++||+++||... ..+++|+++. .|.+.|+
T Consensus 87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~SS~~vyg~~~~~~~~~~~~E~~~~-~p~~~Y~ 164 (699)
T 1z45_A 87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYG 164 (699)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTTCCSBCTTSCC-CCCSHHH
T ss_pred EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECcHHHhCCCccccccCCccccCCC-CCCChHH
Confidence 999999987655455677889999999999999999998876 999999999998643 2467777765 6789999
Q ss_pred HHHHHHHHHHHHHHHH--hCCcEEEEeeCcccCCCCC----------CCCcHHHHHHHHHcC--CceEEEee---CCCCc
Q 011841 272 ATKKAGEEIAHTYNHI--YGLALTGLRFFTVYGPWGR----------PDMAYFFFTKDILQG--KTIDVYKT---QDDRE 334 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~--~gi~~~ilRp~~v~G~~~~----------~~~~~~~~~~~~~~g--~~~~~~~~---~~~~~ 334 (476)
.+|.++|.+++.+..+ .++++++|||++||||+.. ...++..+. .+..+ .++.++.. ..+++
T Consensus 165 ~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~g~ 243 (699)
T 1z45_A 165 HTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMA-QVAVGRREKLYIFGDDYDSRDGT 243 (699)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHH-HHHTTSSSCCCCC------CCSS
T ss_pred HHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccccccccccchhHHHHHHH-HHHhcCCCceEEeCCcccCCCCC
Confidence 9999999999999877 6999999999999998521 123444343 34433 45655520 01578
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVP 414 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~ 414 (476)
+.++|+|++|+|++++.+++......+. ....++|||++++++|+.|+++.+.+.+|.+.+....+. ...+..
T Consensus 244 ~~~~~i~v~Dva~a~~~a~~~~~~~~~~------~~~~~~yni~~~~~~s~~el~~~i~~~~g~~~~~~~~~~-~~~~~~ 316 (699)
T 1z45_A 244 PIRDYIHVVDLAKGHIAALQYLEAYNEN------EGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR-RAGDVL 316 (699)
T ss_dssp CEECEEEHHHHHHHHHHHHHHHHHSCTT------CCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC----------CC
T ss_pred eeEeeEEHHHHHHHHHHHHhhhhccccc------cCCceEEEECCCCCCcHHHHHHHHHHHhCCCCCceecCC-CCCccc
Confidence 8999999999999999999864210000 000179999999999999999999999998866554432 234556
Q ss_pred cccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 415 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 415 ~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
...+|++|++++|||+|+++++|+|+++++||+++...
T Consensus 317 ~~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~~~ 354 (699)
T 1z45_A 317 NLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFG 354 (699)
T ss_dssp CCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred cccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCcc
Confidence 77899999999999999999999999999999887543
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=328.95 Aligned_cols=303 Identities=18% Similarity=0.147 Sum_probs=245.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC-------CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-------DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL 188 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G-------~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~ 188 (476)
.++|+||||||+||||++|+++|+++| ++|++++|....... ....+++++.+|++|.+++.++
T Consensus 12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~ 82 (342)
T 2hrz_A 12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA---------GFSGAVDARAADLSAPGEAEKL 82 (342)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT---------TCCSEEEEEECCTTSTTHHHHH
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc---------ccCCceeEEEcCCCCHHHHHHH
Confidence 467899999999999999999999999 899999997643221 1234789999999999999999
Q ss_pred hccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-----CCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-----PQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 189 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-----~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
+++ ++|+|||+||... ..+.++++..+++|+.++.+++++|++.+ ++ +||++||.++|+.....+++|+++.
T Consensus 83 ~~~-~~d~vih~A~~~~-~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~-~iv~~SS~~~~~~~~~~~~~E~~~~ 159 (342)
T 2hrz_A 83 VEA-RPDVIFHLAAIVS-GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKP-RVVFTSSIAVFGAPLPYPIPDEFHT 159 (342)
T ss_dssp HHT-CCSEEEECCCCCH-HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCC-EEEEEEEGGGCCSSCCSSBCTTCCC
T ss_pred Hhc-CCCEEEECCccCc-ccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCc-EEEEeCchHhhCCCCCCCcCCCCCC
Confidence 852 4599999999754 23456788999999999999999998876 54 9999999999998656688998876
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccC-CCCCC---CCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYG-PWGRP---DMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G-~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.|.+.|+.+|.++|.+++++.++++++.+++|++.||| |+... ..++..+++.+..++++.++ .+++...++
T Consensus 160 -~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 235 (342)
T 2hrz_A 160 -TPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAASGFFSNILREPLVGQEAVLP---VPESIRHWH 235 (342)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSGGGHHHHHHHHHHTTCCEEEC---SCTTCEEEE
T ss_pred -CCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchhHHHHHHHHHHHhcCCCeecc---CCCccceee
Confidence 78899999999999999999988889999999999999 65432 12456677888888887765 445778889
Q ss_pred eeHHHHHHHHHHHHhhcCc--CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcc--ceeecCCCCC---C
Q 011841 340 TYIDDVVKGCVGALDTAGK--STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK--KHVIRMPRNG---D 412 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~--~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~--~~~~~~~~~~---~ 412 (476)
+|++|+|++++.+++.+.. ..+ ++||++ +..+|+.|+++.+.+.+|.+.. +...+.+... .
T Consensus 236 ~~v~Dva~~~~~~~~~~~~~~~~~-----------~~~ni~-g~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~ 303 (342)
T 2hrz_A 236 ASPRSAVGFLIHGAMIDVEKVGPR-----------RNLSMP-GLSATVGEQIEALRKVAGEKAVALIRREPNEMIMRMCE 303 (342)
T ss_dssp ECHHHHHHHHHHHHHSCHHHHCSC-----------CEEECC-CEEEEHHHHHHHHHHHHCHHHHTTEEECCCHHHHHHHT
T ss_pred EehHHHHHHHHHHHhccccccCCc-----------cEEEcC-CCCCCHHHHHHHHHHHcCcccccceeeccCcchhhhhc
Confidence 9999999999999987643 111 899996 4779999999999999997652 2222211100 1
Q ss_pred CCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 011841 413 VPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYV 447 (476)
Q Consensus 413 ~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~ 447 (476)
.....+|++|+++ |||+|+++++|+|+++++||+
T Consensus 304 ~~~~~~d~~k~~~-lG~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 304 GWAPGFEAKRARE-LGFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp TSCCCBCCHHHHH-TTCCCCSSHHHHHHHHHHHHS
T ss_pred ccccccChHHHHH-cCCCCCCCHHHHHHHHHHHhc
Confidence 1223579999998 999999999999999999996
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=323.61 Aligned_cols=297 Identities=14% Similarity=0.135 Sum_probs=237.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCC-----CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRG-----DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G-----~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
+|+||||||+||||++|+++|+++| ++|++++|...... ....+++++.+|++|.+++.+++++.
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~----------~~~~~~~~~~~Dl~d~~~~~~~~~~~ 70 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW----------HEDNPINYVQCDISDPDDSQAKLSPL 70 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC----------CCSSCCEEEECCTTSHHHHHHHHTTC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc----------cccCceEEEEeecCCHHHHHHHHhcC
Confidence 4789999999999999999999999 99999999765432 12457999999999999999999985
Q ss_pred C-ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc--CCCCeEE-------EecCccccCCC--CCCCCCCC
Q 011841 193 P-FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIV-------WASSSSVYGLN--TQVPFSES 260 (476)
Q Consensus 193 ~-~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~--~~~~~~V-------~~SS~~vyg~~--~~~~~~E~ 260 (476)
+ +|+|||+||... .+++..+++|+.++.+++++|++. +++ +|| |+||.++||.. ...+++|+
T Consensus 71 ~~~d~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~-~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~ 144 (364)
T 2v6g_A 71 TDVTHVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLK-HISLQTGRKHYMGPFESYGKIESHDPPYTED 144 (364)
T ss_dssp TTCCEEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCC-EEEEECCTHHHHCCGGGTTTSCCCCSSBCTT
T ss_pred CCCCEEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccc-eEEeccCceEEEechhhccccccCCCCCCcc
Confidence 5 799999999743 467889999999999999999988 665 887 89999999975 34578888
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhC-CcEEEEeeCcccCCCCCC--CCcHHH-HHHHH--HcCCceEEEeeCCCC-
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIYG-LALTGLRFFTVYGPWGRP--DMAYFF-FTKDI--LQGKTIDVYKTQDDR- 333 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g-i~~~ilRp~~v~G~~~~~--~~~~~~-~~~~~--~~g~~~~~~~~~~~~- 333 (476)
++..++.+.| +.+|.+++++.++++ ++++++||+.||||+... ...... +...+ ..|.++.++ +++
T Consensus 145 ~~~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---g~~~ 217 (364)
T 2v6g_A 145 LPRLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFT---GCKA 217 (364)
T ss_dssp SCCCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCSSCHHHHHHHHHHHHHHHTCCBCCC---SCHH
T ss_pred ccCCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcccchHHHHHHHHHHHHhcCCceecC---CCcc
Confidence 8764446778 458999999887777 999999999999997653 222333 34444 367777666 555
Q ss_pred --ceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccce--eecCC-
Q 011841 334 --EVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH--VIRMP- 408 (476)
Q Consensus 334 --~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~--~~~~~- 408 (476)
....+++|++|+|++++.+++++...+ ++||+++++++|+.|+++.+.+.+|.+.... ..|.+
T Consensus 218 ~~~~~~~~~~v~Dva~a~~~~~~~~~~~g------------~~~ni~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~p~~~ 285 (364)
T 2v6g_A 218 AWDGYSDCSDADLIAEHHIWAAVDPYAKN------------EAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKL 285 (364)
T ss_dssp HHHSCBCCEEHHHHHHHHHHHHHCGGGTT------------EEEEECCSCCBCHHHHHHHHHHHHTCCBCCCCTTCCCCH
T ss_pred cccccCCCCcHHHHHHHHHHHHhCCCCCC------------ceEEecCCCcCCHHHHHHHHHHHhCCCCCCCCCCCCccH
Confidence 345789999999999999998765432 8999999999999999999999999876533 22321
Q ss_pred --------------------CCC---CC-----------Cc-ccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHc
Q 011841 409 --------------------RNG---DV-----------PY-THANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 409 --------------------~~~---~~-----------~~-~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~ 450 (476)
... +. .. ..+|++|+++ |||+|.++++|+|+++++||++..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~e~l~~~~~~~~~~g 361 (364)
T 2v6g_A 286 QDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKE-HGFLGFRNSKNAFISWIDKAKAYK 361 (364)
T ss_dssp HHHTTTCHHHHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCCBCCHHHHH-TTCCCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhHHHHHHHHHHhCCCccccccccccchhhhccccchhhcchHHHHh-cCCCCCCCHHHHHHHHHHHHHHcC
Confidence 000 10 23 4789999988 999999999999999999998653
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=325.38 Aligned_cols=302 Identities=17% Similarity=0.167 Sum_probs=233.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh--hcCCceEEE-EeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIV-EGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~-~~Dl~d~~~l~~~~~~~ 192 (476)
.++|+||||||+||||++|+++|+++|++|++++|..+. ........ ....+++++ .+|++|.+++.++++++
T Consensus 9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~ 84 (342)
T 1y1p_A 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK----LANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA 84 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCccc----HHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCC
Confidence 567899999999999999999999999999999994321 11111111 012478888 79999999999999865
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHh-cCCCCeEEEecCccccCCCC----CCCCCCCCC-----
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS-VNPQPSIVWASSSSVYGLNT----QVPFSESHR----- 262 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~-~~~~~~~V~~SS~~vyg~~~----~~~~~E~~~----- 262 (476)
|+|||+||..... .++...+++|+.++.+++++|.+ .+++ +||++||.++|+... +.+++|+++
T Consensus 85 --d~vih~A~~~~~~---~~~~~~~~~n~~g~~~ll~~~~~~~~~~-~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~ 158 (342)
T 1y1p_A 85 --AGVAHIASVVSFS---NKYDEVVTPAIGGTLNALRAAAATPSVK-RFVLTSSTVSALIPKPNVEGIYLDEKSWNLESI 158 (342)
T ss_dssp --SEEEECCCCCSCC---SCHHHHHHHHHHHHHHHHHHHHTCTTCC-EEEEECCGGGTCCCCTTCCCCEECTTCCCHHHH
T ss_pred --CEEEEeCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhCCCCc-EEEEeccHHHhcCCCCCCCCcccCccccCchhh
Confidence 9999999985432 46788999999999999999985 5654 999999999986432 146777763
Q ss_pred ----------CCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCCC---cHHHHHHHHHcCCceEEE
Q 011841 263 ----------TDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDM---AYFFFTKDILQGKTIDVY 327 (476)
Q Consensus 263 ----------~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~g~~~~~~ 327 (476)
+..|.+.|+.+|.++|.+++.+.+++ +++++++||++||||...+.. .+..++..+.+++++.++
T Consensus 159 ~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (342)
T 1y1p_A 159 DKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL 238 (342)
T ss_dssp HHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCCCCccHHHHHHHHHcCCCcccc
Confidence 12356789999999999999998876 789999999999999765432 677888889999887655
Q ss_pred eeCCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecC
Q 011841 328 KTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM 407 (476)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~ 407 (476)
+++ +.++|+|++|+|++++.+++++...+ +.+ +..+..+|+.|+++.+.+.+|.+ .+ ..+.
T Consensus 239 ---~~~-~~~~~v~v~Dva~a~~~~~~~~~~~g------------~~~-~~~g~~~s~~e~~~~i~~~~~~~-~~-~~~~ 299 (342)
T 1y1p_A 239 ---ALM-PPQYYVSAVDIGLLHLGCLVLPQIER------------RRV-YGTAGTFDWNTVLATFRKLYPSK-TF-PADF 299 (342)
T ss_dssp ---HTC-CSEEEEEHHHHHHHHHHHHHCTTCCS------------CEE-EECCEEECHHHHHHHHHHHCTTS-CC-CCCC
T ss_pred ---ccC-CcCCEeEHHHHHHHHHHHHcCcccCC------------ceE-EEeCCCCCHHHHHHHHHHHCCCc-cC-CCCC
Confidence 333 67899999999999999998754322 444 34557799999999999999975 22 1111
Q ss_pred CCCCCCCcccccHHHHHHhcCC---CcccCHHHHHHHHHHHHH
Q 011841 408 PRNGDVPYTHANVSLAYKDFGY---KPTTDLAAGLRKFVKWYV 447 (476)
Q Consensus 408 ~~~~~~~~~~~d~~ka~~~LG~---~p~~~l~e~l~~~v~~~~ 447 (476)
+. .......+|++|++++||| .+.++++++|+++++||+
T Consensus 300 ~~-~~~~~~~~d~~k~~~~lg~~~~~~~~~l~~~l~~~~~~~~ 341 (342)
T 1y1p_A 300 PD-QGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSET 341 (342)
T ss_dssp CC-CCCCCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCSC
T ss_pred Cc-cccccccCChHHHHHHHhhcccCCcCCHHHHHHHHHHHhh
Confidence 11 1123467899999999987 566799999999999874
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-39 Score=312.66 Aligned_cols=269 Identities=16% Similarity=0.162 Sum_probs=218.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+|+|||||| ||||++|+++|+++|++|++++|.... . ..+...+++++.+|+.|.+ ++++ |+|
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~----~-----~~~~~~~~~~~~~D~~d~~-----~~~~--d~v 67 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQ----M-----EAIRASGAEPLLWPGEEPS-----LDGV--THL 67 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGG----H-----HHHHHTTEEEEESSSSCCC-----CTTC--CEE
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhh----h-----hhHhhCCCeEEEecccccc-----cCCC--CEE
Confidence 479999998 999999999999999999999995431 1 1112258999999999944 5555 999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHh--cCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS--VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~--~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
||+|+..... + ..+.+++++|++ .+++ +|||+||.++||.....+++|+++. .|.+.|+.+|.
T Consensus 68 i~~a~~~~~~----~---------~~~~~l~~a~~~~~~~~~-~~v~~Ss~~vyg~~~~~~~~E~~~~-~p~~~Y~~sK~ 132 (286)
T 3ius_A 68 LISTAPDSGG----D---------PVLAALGDQIAARAAQFR-WVGYLSTTAVYGDHDGAWVDETTPL-TPTAARGRWRV 132 (286)
T ss_dssp EECCCCBTTB----C---------HHHHHHHHHHHHTGGGCS-EEEEEEEGGGGCCCTTCEECTTSCC-CCCSHHHHHHH
T ss_pred EECCCccccc----c---------HHHHHHHHHHHhhcCCce-EEEEeecceecCCCCCCCcCCCCCC-CCCCHHHHHHH
Confidence 9999974421 1 125788999988 6665 9999999999998887789999887 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
++|.+++++ .|+++++|||++||||+... +..+.++....+. ++ .+.++|+|++|+|++++.++++
T Consensus 133 ~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~-------~~~~~~~~~~~~~---~~-~~~~~~i~v~Dva~a~~~~~~~ 198 (286)
T 3ius_A 133 MAEQQWQAV---PNLPLHVFRLAGIYGPGRGP-------FSKLGKGGIRRII---KP-GQVFSRIHVEDIAQVLAASMAR 198 (286)
T ss_dssp HHHHHHHHS---TTCCEEEEEECEEEBTTBSS-------STTSSSSCCCEEE---CT-TCCBCEEEHHHHHHHHHHHHHS
T ss_pred HHHHHHHhh---cCCCEEEEeccceECCCchH-------HHHHhcCCccccC---CC-CcccceEEHHHHHHHHHHHHhC
Confidence 999999997 59999999999999997543 2345678777776 33 5789999999999999999998
Q ss_pred cCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCC-CCCC------CCcccccHHHHHHhcC
Q 011841 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP-RNGD------VPYTHANVSLAYKDFG 428 (476)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~-~~~~------~~~~~~d~~ka~~~LG 428 (476)
+.. + ++||+++++++|+.|+++.+.+.+|.+........+ ..++ .....+|++|++++||
T Consensus 199 ~~~-g------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG 265 (286)
T 3ius_A 199 PDP-G------------AVYNVCDDEPVPPQDVIAYAAELQGLPLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELG 265 (286)
T ss_dssp CCT-T------------CEEEECCSCCBCHHHHHHHHHHHHTCCCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTC
T ss_pred CCC-C------------CEEEEeCCCCccHHHHHHHHHHHcCCCCCcccchhhhccChhHHHhhcCCceeehHHHHHHhC
Confidence 762 2 899999999999999999999999987654332211 1221 2556789999999999
Q ss_pred CCccc-CHHHHHHHHHHH
Q 011841 429 YKPTT-DLAAGLRKFVKW 445 (476)
Q Consensus 429 ~~p~~-~l~e~l~~~v~~ 445 (476)
|+|++ +++|+|+++++.
T Consensus 266 ~~p~~p~~~e~l~~~~~~ 283 (286)
T 3ius_A 266 VRLKYPNYRVGLEALQAD 283 (286)
T ss_dssp CCCSCSSHHHHHHHHHHT
T ss_pred CCCCcCCHHHHHHHHHHh
Confidence 99999 799999998764
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=318.03 Aligned_cols=306 Identities=18% Similarity=0.237 Sum_probs=220.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
++|+||||||+||||++|+++|+++|++|++++|+.+.... .... ..... ..+++++.+|++|.+++.++++++ |
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 79 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKK-VKHL-LDLPKAETHLTLWKADLADEGSFDEAIKGC--T 79 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHH-HHHH-HTSTTHHHHEEEEECCTTSTTTTHHHHTTC--S
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHH-HHHH-HhcccCCCeEEEEEcCCCCHHHHHHHHcCC--C
Confidence 56899999999999999999999999999999986532111 0000 11110 126889999999999999999877 9
Q ss_pred EEEEccccCChhhhhcChH-HHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCcc-ccCCCC-CCCCCCCCCCC-------
Q 011841 196 HVLHLAAQAGVRYAMQNPQ-SYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS-VYGLNT-QVPFSESHRTD------- 264 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~-~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~-vyg~~~-~~~~~E~~~~~------- 264 (476)
+|||+|+... ....++. ..+++|+.|+.+++++|++.+ ++ +|||+||.+ +|+... ..+++|+++..
T Consensus 80 ~Vih~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 156 (337)
T 2c29_D 80 GVFHVATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVR-RLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAK 156 (337)
T ss_dssp EEEECCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCC-EEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHH
T ss_pred EEEEeccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCcc-EEEEeeeHhhcccCCCCCcccCcccCCchhhhccc
Confidence 9999998742 2223443 588999999999999999887 54 999999987 454332 23456665321
Q ss_pred -CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHH--HHHcCCceEEEeeCCCCceeEecee
Q 011841 265 -QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTK--DILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 -~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.+.+.|+.+|.++|.+++++.+.+|+++++|||++||||+...... ..+.. ....|.... + +.. ....|+|
T Consensus 157 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~-~~~~~~~~~~~g~~~~-~---~~~-~~~~~i~ 230 (337)
T 2c29_D 157 KMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSMP-PSLITALSPITGNEAH-Y---SII-RQGQFVH 230 (337)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSCC-HHHHHHTHHHHTCGGG-H---HHH-TEEEEEE
T ss_pred CCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCC-chHHHHHHHHcCCCcc-c---ccc-CCCCEEE
Confidence 2445799999999999999887789999999999999997654322 11111 123344321 1 111 2345999
Q ss_pred HHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCC-CccceeecCCCCCCCCcccccH
Q 011841 342 IDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT-KAKKHVIRMPRNGDVPYTHANV 420 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~d~ 420 (476)
++|+|++++.+++++.. . ++|++++ ..+|+.|+++.+.+.++. +.+.... +...+.....+|+
T Consensus 231 v~Dva~a~~~~~~~~~~-~------------~~~~~~~-~~~s~~e~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~d~ 294 (337)
T 2c29_D 231 LDDLCNAHIYLFENPKA-E------------GRYICSS-HDCIILDLAKMLREKYPEYNIPTEFK--GVDENLKSVCFSS 294 (337)
T ss_dssp HHHHHHHHHHHHHCTTC-C------------EEEEECC-EEEEHHHHHHHHHHHCTTSCCCSCCT--TCCTTCCCCEECC
T ss_pred HHHHHHHHHHHhcCccc-C------------ceEEEeC-CCCCHHHHHHHHHHHCCCccCCCCCC--cccCCCccccccH
Confidence 99999999999976433 2 6787765 568999999999998743 2211111 1122445667899
Q ss_pred HHHHHhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 421 SLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 421 ~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
+|+ ++|||+|+++++|+|+++++||++....
T Consensus 295 ~k~-~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 325 (337)
T 2c29_D 295 KKL-TDLGFEFKYSLEDMFTGAVDTCRAKGLL 325 (337)
T ss_dssp HHH-HHHTCCCCCCHHHHHHHHHHHHHHTTSS
T ss_pred HHH-HHcCCCcCCCHHHHHHHHHHHHHHcCCC
Confidence 999 7899999999999999999999876443
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=312.75 Aligned_cols=303 Identities=17% Similarity=0.205 Sum_probs=214.9
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC-CCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN-FNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R-~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
+|+||||||+||||++|+++|+++|++|++++| ..+..... ... .... ...+++++.+|++|.+++.++++++ |
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--d 76 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDV-SFL-TNLPGASEKLHFFNADLSNPDSFAAAIEGC--V 76 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCC-HHH-HTSTTHHHHEEECCCCTTCGGGGHHHHTTC--S
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHH-HHH-HhhhccCCceEEEecCCCCHHHHHHHHcCC--C
Confidence 478999999999999999999999999999998 43221111 111 1110 0126888999999999999999977 9
Q ss_pred EEEEccccCChhhhhcCh-HHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCcccc-CCCC-CCCCCCCCCCC-------
Q 011841 196 HVLHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVY-GLNT-QVPFSESHRTD------- 264 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~-~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vy-g~~~-~~~~~E~~~~~------- 264 (476)
+|||+|+.. .....++ +.++++|+.|+.+++++|++. +++ +|||+||.+++ +... ..+++|+++..
T Consensus 77 ~vih~A~~~--~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~-~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 153 (322)
T 2p4h_X 77 GIFHTASPI--DFAVSEPEEIVTKRTVDGALGILKACVNSKTVK-RFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSV 153 (322)
T ss_dssp EEEECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCC-EEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHH
T ss_pred EEEEcCCcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEeccHHHcccCCCCCeecCCccccchhhhccc
Confidence 999999753 2233333 458999999999999999988 665 99999998754 3222 23566665321
Q ss_pred CCCC-hHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcH-HHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 265 QPAS-LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAY-FFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 265 ~p~~-~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
.|.. .|+.+|.++|.+++++.+.+|+++++|||++||||+....... ...+..+..|....+. . ..++|+|+
T Consensus 154 ~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~~~~~~~~~~~~~g~~~~~~-----~-~~~~~i~v 227 (322)
T 2p4h_X 154 KPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIG-----V-TRFHMVHV 227 (322)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSCCHHHHHHTHHHHSCGGGCC-----E-EEEEEEEH
T ss_pred CcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCCCchHHHHHHHHhCCCccCc-----C-CCcCEEEH
Confidence 2233 6999999999999999887899999999999999975432211 1111223445543222 1 33489999
Q ss_pred HHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCC-CccceeecCCCCCCCCcccccHH
Q 011841 343 DDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT-KAKKHVIRMPRNGDVPYTHANVS 421 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~d~~ 421 (476)
+|+|++++.+++++.. . +.|| +++..+|+.|+++.+.+.++. +.+... ............+|++
T Consensus 228 ~Dva~a~~~~~~~~~~-~------------g~~~-~~~~~~s~~e~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~ 292 (322)
T 2p4h_X 228 DDVARAHIYLLENSVP-G------------GRYN-CSPFIVPIEEMSQLLSAKYPEYQILTVD-ELKEIKGARLPDLNTK 292 (322)
T ss_dssp HHHHHHHHHHHHSCCC-C------------EEEE-CCCEEEEHHHHHHHHHHHCTTSCCCCTT-TTTTCCCEECCEECCH
T ss_pred HHHHHHHHHHhhCcCC-C------------CCEE-EcCCCCCHHHHHHHHHHhCCCCCCCCCc-cccCCCCCcceecccH
Confidence 9999999999976442 2 5588 566889999999999988752 111100 0000111145678999
Q ss_pred HHHHhcCCCcccCHHHHHHHHHHHHHHH
Q 011841 422 LAYKDFGYKPTTDLAAGLRKFVKWYVSY 449 (476)
Q Consensus 422 ka~~~LG~~p~~~l~e~l~~~v~~~~~~ 449 (476)
|+ ++|||+|+++++|+|+++++||++.
T Consensus 293 k~-~~lG~~p~~~~~~~l~~~~~~~~~~ 319 (322)
T 2p4h_X 293 KL-VDAGFDFKYTIEDMFDDAIQCCKEK 319 (322)
T ss_dssp HH-HHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred HH-HHhCCccCCCHHHHHHHHHHHHHhc
Confidence 99 6699999999999999999999865
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=320.94 Aligned_cols=306 Identities=16% Similarity=0.162 Sum_probs=217.1
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+|+||||||+||||++|+++|+++|++|++++|+.+....... . .......+++++.+|++|.+++.++++++ |+|
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~-~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--D~V 84 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSH-L-LELQELGDLKIFRADLTDELSFEAPIAGC--DFV 84 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHH-H-HHHGGGSCEEEEECCTTTSSSSHHHHTTC--SEE
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHH-H-HhcCCCCcEEEEecCCCChHHHHHHHcCC--CEE
Confidence 6899999999999999999999999999999996543322111 1 11112347899999999999999999877 999
Q ss_pred EEccccCChhhhhcCh-HHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCcc-ccCCCC---CCCCCCCCCCC-------
Q 011841 198 LHLAAQAGVRYAMQNP-QSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS-VYGLNT---QVPFSESHRTD------- 264 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~-~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~-vyg~~~---~~~~~E~~~~~------- 264 (476)
||+|+.... ...++ +.++++|+.|+.+++++|++.+ ++ +|||+||.+ +|+... ..+++|+++..
T Consensus 85 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~-r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~ 161 (338)
T 2rh8_A 85 FHVATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVK-RVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSA 161 (338)
T ss_dssp EEESSCCCC-----------CHHHHHHHHHHHHHHHHCTTCC-EEEEECCHHHHHHHHHTCSCCCCCTTTTTCC------
T ss_pred EEeCCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcC-EEEEEecHHHeecCCcCCCCcccChhhccchhhcccc
Confidence 999987532 22344 3488999999999999999986 65 999999987 443211 12667765321
Q ss_pred C-CCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcH-HHHHHHHHcCCceEEEeeCC---CCceeEec
Q 011841 265 Q-PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAY-FFFTKDILQGKTIDVYKTQD---DREVARDF 339 (476)
Q Consensus 265 ~-p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~---~~~~~~~~ 339 (476)
. +...|+.+|.++|.+++++.+++|+++++|||++||||+....... ...+..+..|.+.. +.... .+...++|
T Consensus 162 ~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 240 (338)
T 2rh8_A 162 KPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFL-INGMKGMQMLSGSVSI 240 (338)
T ss_dssp -CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSCCHHHHHHHHHHHTCHHH-HHHHHHHHHHHSSEEE
T ss_pred CCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCCCchHHHHHHHHcCCccc-cccccccccccCcccE
Confidence 1 1226999999999999999887899999999999999976533211 11122224454321 10000 01223589
Q ss_pred eeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCC-CccceeecCCCCCCCCcccc
Q 011841 340 TYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT-KAKKHVIRMPRNGDVPYTHA 418 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~ 418 (476)
+|++|+|++++.+++++.. . +.||++++ .+|+.|+++.+.+.++. +.+....+ ...+ ....+
T Consensus 241 i~v~Dva~a~~~~~~~~~~-~------------~~~~~~~~-~~s~~e~~~~l~~~~~~~~~~~~~~~--~~~~-~~~~~ 303 (338)
T 2rh8_A 241 AHVEDVCRAHIFVAEKESA-S------------GRYICCAA-NTSVPELAKFLSKRYPQYKVPTDFGD--FPPK-SKLII 303 (338)
T ss_dssp EEHHHHHHHHHHHHHCTTC-C------------EEEEECSE-EECHHHHHHHHHHHCTTSCCCCCCTT--SCSS-CSCCC
T ss_pred EEHHHHHHHHHHHHcCCCc-C------------CcEEEecC-CCCHHHHHHHHHHhCCCCCCCCCCCC--CCcC-cceee
Confidence 9999999999999976433 2 77888764 69999999999998763 22111111 1111 23678
Q ss_pred cHHHHHHhcCCCcccCHHHHHHHHHHHHHHH
Q 011841 419 NVSLAYKDFGYKPTTDLAAGLRKFVKWYVSY 449 (476)
Q Consensus 419 d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~ 449 (476)
|++|+ ++|||+|+++++|+|+++++||++.
T Consensus 304 d~~k~-~~lG~~p~~~l~~gl~~~~~~~~~~ 333 (338)
T 2rh8_A 304 SSEKL-VKEGFSFKYGIEEIYDESVEYFKAK 333 (338)
T ss_dssp CCHHH-HHHTCCCSCCHHHHHHHHHHHHHHT
T ss_pred chHHH-HHhCCCCCCCHHHHHHHHHHHHHHc
Confidence 99999 6699999999999999999999865
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=294.41 Aligned_cols=268 Identities=18% Similarity=0.146 Sum_probs=223.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+|+||++++++|+ +|++|++++|..... .+ +.+|++|++++.+++++.++|+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~--------------~~---~~~Dl~~~~~~~~~~~~~~~d~vi 62 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ--------------GG---YKLDLTDFPRLEDFIIKKRPDVII 62 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT--------------TC---EECCTTSHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC--------------CC---ceeccCCHHHHHHHHHhcCCCEEE
Confidence 579999999999999999999 589999999965310 12 789999999999999875669999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
||||........++++..+++|+.++.+++++|++.+. +||++||.++|+.... +++|+++. .|.+.|+.+|.++|
T Consensus 63 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~iv~~SS~~~~~~~~~-~~~e~~~~-~~~~~Y~~sK~~~e 138 (273)
T 2ggs_A 63 NAAAMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS--YIVHISTDYVFDGEKG-NYKEEDIP-NPINYYGLSKLLGE 138 (273)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEEEGGGSCSSSC-SBCTTSCC-CCSSHHHHHHHHHH
T ss_pred ECCcccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEecceeEcCCCC-CcCCCCCC-CCCCHHHHHHHHHH
Confidence 99998776656678899999999999999999998874 8999999999987654 78888876 77899999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
.+++. +++++|||+.|||+ ..+...+...+..++++.++ ++ .++++|++|+|++++.+++++.
T Consensus 139 ~~~~~------~~~~~iR~~~v~G~----~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~dva~~i~~~~~~~~- 201 (273)
T 2ggs_A 139 TFALQ------DDSLIIRTSGIFRN----KGFPIYVYKTLKEGKTVFAF-----KG-YYSPISARKLASAILELLELRK- 201 (273)
T ss_dssp HHHCC------TTCEEEEECCCBSS----SSHHHHHHHHHHTTCCEEEE-----SC-EECCCBHHHHHHHHHHHHHHTC-
T ss_pred HHHhC------CCeEEEeccccccc----cHHHHHHHHHHHcCCCEEee-----cC-CCCceEHHHHHHHHHHHHhcCc-
Confidence 98876 57899999999983 33455666777888888776 23 7899999999999999998753
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecC---CCCCCCCcccccHHHHHHhcCCCc-ccC
Q 011841 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM---PRNGDVPYTHANVSLAYKDFGYKP-TTD 434 (476)
Q Consensus 359 ~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~---~~~~~~~~~~~d~~ka~~~LG~~p-~~~ 434 (476)
. ++||+++ +.+|+.|+++.+.+.+|.+........ ..........+|++|++++|||+| .++
T Consensus 202 -~------------g~~~i~~-~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~ 267 (273)
T 2ggs_A 202 -T------------GIIHVAG-ERISRFELALKIKEKFNLPGEVKEVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLD 267 (273)
T ss_dssp -C------------EEEECCC-CCEEHHHHHHHHHHHTTCCSCEEEESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCC
T ss_pred -C------------CeEEECC-CcccHHHHHHHHHHHhCCChhhcccccccccccCCCcccccCHHHHHHHhCCCCCCcc
Confidence 2 8999999 999999999999999998865432211 112234567899999999999999 688
Q ss_pred HHHHH
Q 011841 435 LAAGL 439 (476)
Q Consensus 435 l~e~l 439 (476)
++++|
T Consensus 268 l~~~~ 272 (273)
T 2ggs_A 268 LDGMV 272 (273)
T ss_dssp GGGCC
T ss_pred ccccc
Confidence 88875
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=295.24 Aligned_cols=275 Identities=17% Similarity=0.134 Sum_probs=214.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|||||||||||++|+++|+++||+|++++|+.... . +.. .+...+.++++ |+||
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~---------------~---~~~----~~~~~~~l~~~--d~vi 56 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG---------------R---ITW----DELAASGLPSC--DAAV 56 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT---------------E---EEH----HHHHHHCCCSC--SEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC---------------e---eec----chhhHhhccCC--CEEE
Confidence 7899999999999999999999999999999954311 1 111 22334456666 9999
Q ss_pred EccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 199 HLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP-SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 199 ~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
|+|+.... +++....+.+.+.|+.+|.+|+++|+..+.++ +||++||+++||.....+.+|+++. .+.+.|+..
T Consensus 57 hla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~-~~~~~~~~~ 135 (298)
T 4b4o_A 57 NLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPG-GDFDFFSNL 135 (298)
T ss_dssp ECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCC-SCSSHHHHH
T ss_pred EeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCc-cccchhHHH
Confidence 99985321 23344556789999999999999999887653 5899999999999988899999876 788889988
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l 353 (476)
|...|... .....+++++++||+.||||++. .+..+......+.... . +++++.++|+|++|+|++++.++
T Consensus 136 ~~~~e~~~--~~~~~~~~~~~~r~~~v~g~~~~---~~~~~~~~~~~~~~~~-~---g~g~~~~~~ihv~Dva~a~~~~~ 206 (298)
T 4b4o_A 136 VTKWEAAA--RLPGDSTRQVVVRSGVVLGRGGG---AMGHMLLPFRLGLGGP-I---GSGHQFFPWIHIGDLAGILTHAL 206 (298)
T ss_dssp HHHHHHHH--CCSSSSSEEEEEEECEEECTTSH---HHHHHHHHHHTTCCCC-B---TTSCSBCCEEEHHHHHHHHHHHH
T ss_pred HHHHHHHH--HhhccCCceeeeeeeeEEcCCCC---chhHHHHHHhcCCcce-e---cccCceeecCcHHHHHHHHHHHH
Confidence 88888653 33446899999999999999643 4555666666665443 3 77899999999999999999999
Q ss_pred hhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCC------CCC------CcccccHH
Q 011841 354 DTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN------GDV------PYTHANVS 421 (476)
Q Consensus 354 ~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~------~~~------~~~~~d~~ 421 (476)
+++... ++||+++++++|+.|+++.+++.+|++.. .|.|.. ++. ......++
T Consensus 207 ~~~~~~-------------g~yn~~~~~~~t~~e~~~~ia~~lgrp~~---~pvP~~~~~~~~g~~~~~~~l~~~rv~~~ 270 (298)
T 4b4o_A 207 EANHVH-------------GVLNGVAPSSATNAEFAQTFGAALGRRAF---IPLPSAVVQAVFGRQRAIMLLEGQKVIPR 270 (298)
T ss_dssp HCTTCC-------------EEEEESCSCCCBHHHHHHHHHHHHTCCCC---CCBCHHHHHHHHCHHHHHHHHCCCCBCCH
T ss_pred hCCCCC-------------CeEEEECCCccCHHHHHHHHHHHhCcCCc---ccCCHHHHHHHhcchhHHHhhCCCEEcHH
Confidence 987654 89999999999999999999999998653 233321 100 12335667
Q ss_pred HHHHhcCCCccc-CHHHHHHHHHH
Q 011841 422 LAYKDFGYKPTT-DLAAGLRKFVK 444 (476)
Q Consensus 422 ka~~~LG~~p~~-~l~e~l~~~v~ 444 (476)
|++ ++||+++| +|+++|+++++
T Consensus 271 kl~-~~Gf~f~yp~l~~al~~l~~ 293 (298)
T 4b4o_A 271 RTL-ATGYQYSFPELGAALKEIAE 293 (298)
T ss_dssp HHH-HTTCCCSCCSHHHHHHHHHH
T ss_pred HHH-HCCCCCCCCCHHHHHHHHHH
Confidence 886 59999998 59999999887
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=302.30 Aligned_cols=307 Identities=17% Similarity=0.217 Sum_probs=228.2
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHh----------hhcCCceEEEEeecCCHH
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQK----------LLQKHQVFIVEGDLNDAP 183 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~----------~~~~~~v~~~~~Dl~d~~ 183 (476)
....+|+||||||+||||++|+++|+++|++|++++|.....+ ...+.... .....+++++.+|++|++
T Consensus 65 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 143 (427)
T 4f6c_A 65 SHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEI-AWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD 143 (427)
T ss_dssp CCCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHH-HHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHH-HHHHHHHHHHHhccccccccccCceEEEeCCCCCcc
Confidence 3356789999999999999999999999999999999765211 11111110 112358999999999988
Q ss_pred HHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC-----CCCCCCC
Q 011841 184 LLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL-----NTQVPFS 258 (476)
Q Consensus 184 ~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~-----~~~~~~~ 258 (476)
.+. .+. ++|+||||||.... ..++...+++|+.++.+++++|++ +.+ +||++||.++ |. ....+++
T Consensus 144 ~l~-~~~--~~d~Vih~A~~~~~---~~~~~~~~~~Nv~g~~~l~~aa~~-~~~-~~v~~SS~~~-G~~~~~~~~~~~~~ 214 (427)
T 4f6c_A 144 DVV-LPE--NMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHA-RLIYVSTISV-GTYFDIDTEDVTFS 214 (427)
T ss_dssp CCC-CSS--CCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHH-TTC-EEEEEEEGGG-GSEECSSCSCCEEC
T ss_pred cCC-CcC--CCCEEEECCcccCC---CCCHHHHHHHHHHHHHHHHHHHHh-cCC-cEEEECchHh-CCCccCCCCCcccc
Confidence 877 444 45999999998643 356678899999999999999999 554 9999999998 43 2345788
Q ss_pred CCCCC--CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC-------CcHHHHHHHHHcCCceEEEee
Q 011841 259 ESHRT--DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-------MAYFFFTKDILQGKTIDVYKT 329 (476)
Q Consensus 259 E~~~~--~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~g~~~~~~~~ 329 (476)
|+++. ..+.+.|+.+|+++|.+++++.+ .|+++++||||+|||+..... ..+..+++.+.++++++..
T Consensus 215 E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 291 (427)
T 4f6c_A 215 EADVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVS-- 291 (427)
T ss_dssp TTCSCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHH--
T ss_pred ccccccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCccccCcchHHHHHHHHHHHhcCCCCCc--
Confidence 88762 24789999999999999999865 699999999999999976543 2366788888888776542
Q ss_pred CCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCC
Q 011841 330 QDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR 409 (476)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~ 409 (476)
.++..++|++++|+|++++.++..+. .+ ++||+++++++++.|+++.+.+ +| ....+.+.
T Consensus 292 --~~~~~~~~v~v~DvA~ai~~~~~~~~-~g------------~~~~l~~~~~~s~~el~~~i~~-~g----~~~~~~~~ 351 (427)
T 4f6c_A 292 --MAEMPVDFSFVDTTARQIVALAQVNT-PQ------------IIYHVLSPNKMPVKSLLECVKR-KE----IELVSDES 351 (427)
T ss_dssp --HHTCEECCEEHHHHHHHHHHHTTSCC-CC------------SEEEESCSCCEEHHHHHHHHHS-SC----CEEECHHH
T ss_pred --cccceEEEeeHHHHHHHHHHHHcCCC-CC------------CEEEecCCCCCcHHHHHHHHHH-cC----CcccCHHH
Confidence 25788999999999999999998876 32 9999999999999999999998 56 22222111
Q ss_pred C-------C------------CCCcccccHHHHH---HhcCCCcccCHHHHHHHHHHHHHHHcCCC
Q 011841 410 N-------G------------DVPYTHANVSLAY---KDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 410 ~-------~------------~~~~~~~d~~ka~---~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 453 (476)
+ + ......+|+++.. +++||++...-++.++++++|+++.++..
T Consensus 352 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~~~~~~ 417 (427)
T 4f6c_A 352 FNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNKA 417 (427)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHhcCchhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHhhh
Confidence 0 0 1113445666554 66899988555779999999999987643
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=311.29 Aligned_cols=282 Identities=17% Similarity=0.121 Sum_probs=212.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+|+||||||+||||++|++.|+++|++|++++|..... ..+.+|+.|. +.++++++ |+|
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~-----------------~~v~~d~~~~--~~~~l~~~--D~V 205 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP-----------------GKRFWDPLNP--ASDLLDGA--DVL 205 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT-----------------TCEECCTTSC--CTTTTTTC--SEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc-----------------cceeecccch--hHHhcCCC--CEE
Confidence 78999999999999999999999999999999976531 1266787653 45566655 999
Q ss_pred EEccccCCh-hhhhcChHHHHHHHHHHHHHHHHH-HHhcCCCCeEEEecCccccC-CCCCCCCCCCCCCCCCCChHHHHH
Q 011841 198 LHLAAQAGV-RYAMQNPQSYVASNIAGFVNLLEV-CKSVNPQPSIVWASSSSVYG-LNTQVPFSESHRTDQPASLYAATK 274 (476)
Q Consensus 198 i~~Ag~~~~-~~~~~~~~~~~~~nv~gt~~ll~~-a~~~~~~~~~V~~SS~~vyg-~~~~~~~~E~~~~~~p~~~Y~~sK 274 (476)
||+||.... .+...++..++++|+.++.+|+++ |++.+++ +|||+||+++|| .....+++|+++. +.+.|+.+|
T Consensus 206 ih~A~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~-r~V~~SS~~vyg~~~~~~~~~E~~~~--~~~~y~~~~ 282 (516)
T 3oh8_A 206 VHLAGEPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCT-TMISASAVGFYGHDRGDEILTEESES--GDDFLAEVC 282 (516)
T ss_dssp EECCCC-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCC-EEEEEEEGGGGCSEEEEEEECTTSCC--CSSHHHHHH
T ss_pred EECCCCccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCC-EEEEeCcceEecCCCCCCccCCCCCC--CcChHHHHH
Confidence 999998543 344566788999999999999999 6666665 999999999999 4555578888875 788999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHh
Q 011841 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354 (476)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~ 354 (476)
..+|.++..+ ...|+++++|||++||||+. ..+..+...+..+... .+ +++++.++|+|++|+|++++.+++
T Consensus 283 ~~~E~~~~~~-~~~gi~~~ilRp~~v~Gp~~---~~~~~~~~~~~~g~~~-~~---g~g~~~~~~i~v~Dva~ai~~~l~ 354 (516)
T 3oh8_A 283 RDWEHATAPA-SDAGKRVAFIRTGVALSGRG---GMLPLLKTLFSTGLGG-KF---GDGTSWFSWIAIDDLTDIYYRAIV 354 (516)
T ss_dssp HHHHHTTHHH-HHTTCEEEEEEECEEEBTTB---SHHHHHHHTTC---CC-CC---TTSCCEECEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCCCEEEEEeeEEECCCC---ChHHHHHHHHHhCCCc-cc---CCCCceEceEeHHHHHHHHHHHHh
Confidence 9999887654 44699999999999999974 3555555555544433 33 678899999999999999999998
Q ss_pred hcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCC----CCCC-------CcccccHHHH
Q 011841 355 TAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR----NGDV-------PYTHANVSLA 423 (476)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~----~~~~-------~~~~~d~~ka 423 (476)
++... ++||+++++++|+.|+++.+.+.+|.+.. ...|... .++. ....++++|+
T Consensus 355 ~~~~~-------------g~~ni~~~~~~s~~el~~~i~~~~g~~~~-~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl 420 (516)
T 3oh8_A 355 DAQIS-------------GPINAVAPNPVSNADMTKILATSMHRPAF-IQIPSLGPKILLGSQGAEELALASQRTAPAAL 420 (516)
T ss_dssp CTTCC-------------EEEEESCSCCEEHHHHHHHTTC----------------------CCGGGGGGCEEEECCHHH
T ss_pred CcccC-------------CcEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCCHHHHHHHhCCchhHHHhhcCCeechHHH
Confidence 86532 89999999999999999999999998752 2222111 1111 1234678888
Q ss_pred HHhcCCCcccC-HHHHHHHHHHHH
Q 011841 424 YKDFGYKPTTD-LAAGLRKFVKWY 446 (476)
Q Consensus 424 ~~~LG~~p~~~-l~e~l~~~v~~~ 446 (476)
+ +|||+|+++ |+++|++++++.
T Consensus 421 ~-~lG~~~~~~~l~e~l~~~l~~~ 443 (516)
T 3oh8_A 421 E-NLSHTFRYTDIGAAIAHELGYE 443 (516)
T ss_dssp H-HTTCCCSCSSHHHHHHHHHTCC
T ss_pred H-HCCCCCCCCCHHHHHHHHhCcc
Confidence 8 699999997 999999998854
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=279.24 Aligned_cols=269 Identities=19% Similarity=0.237 Sum_probs=214.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC-CC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~-G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.++|+||||||+|+||++|+++|+++ |+ +|++++|+.. ........+...+++++.+|++|.+.+.++++++
T Consensus 19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~-----~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 92 (344)
T 2gn4_A 19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDEL-----KQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGV- 92 (344)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHH-----HHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTC-
T ss_pred hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChh-----hHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcC-
Confidence 56799999999999999999999999 97 9999999432 1111112223458999999999999999999866
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
|+|||+||.........++...+++|+.|+.+++++|.+.+++ +||++||..++ .|.+.|+.+
T Consensus 93 -D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~SS~~~~---------------~p~~~Y~~s 155 (344)
T 2gn4_A 93 -DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALSTDKAA---------------NPINLYGAT 155 (344)
T ss_dssp -SEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGS---------------SCCSHHHHH
T ss_pred -CEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCCccC---------------CCccHHHHH
Confidence 9999999987766666788899999999999999999999986 99999997764 456899999
Q ss_pred HHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCC-ceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK-TIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 274 K~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
|.++|.+++.++.+ .|+++++||||+|||+++ ..++.+.+.+..|+ ++.+. ++...++|+|++|+|+++
T Consensus 156 K~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~---~~i~~~~~~~~~g~~~~~i~----~~~~~r~~i~v~D~a~~v 228 (344)
T 2gn4_A 156 KLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG---SVVPFFKKLVQNKASEIPIT----DIRMTRFWITLDEGVSFV 228 (344)
T ss_dssp HHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT---SHHHHHHHHHHHTCCCEEES----CTTCEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC---CHHHHHHHHHHcCCCceEEe----CCCeEEeeEEHHHHHHHH
Confidence 99999999998864 579999999999999864 36677888888888 77765 467788999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCC-CCcccccHHHHHHhcC
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGD-VPYTHANVSLAYKDFG 428 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~-~~~~~~d~~ka~~~LG 428 (476)
+.+++++.. | ++||+.++ .+++.|+++.+.+.++. ..... +.++ ......+..++++.++
T Consensus 229 ~~~l~~~~~--g-----------~~~~~~~~-~~s~~el~~~i~~~~~~----~~~~~-~~~e~~~e~~~~~~~~~~~~~ 289 (344)
T 2gn4_A 229 LKSLKRMHG--G-----------EIFVPKIP-SMKMTDLAKALAPNTPT----KIIGI-RPGEKLHEVMIPKDESHLALE 289 (344)
T ss_dssp HHHHHHCCS--S-----------CEEEECCC-EEEHHHHHHHHCTTCCE----EECCC-CTTCCSSCEEECGGGGGGEEE
T ss_pred HHHHhhccC--C-----------CEEecCCC-cEEHHHHHHHHHHhCCe----eEcCC-CCCccHhhhccCHhHHHhhcc
Confidence 999988532 2 89999876 69999999999875432 22221 1222 2233445666666777
Q ss_pred CCccc
Q 011841 429 YKPTT 433 (476)
Q Consensus 429 ~~p~~ 433 (476)
|.+-+
T Consensus 290 ~~~~~ 294 (344)
T 2gn4_A 290 FEDFF 294 (344)
T ss_dssp CSSEE
T ss_pred CCCEE
Confidence 76544
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=303.66 Aligned_cols=305 Identities=17% Similarity=0.212 Sum_probs=227.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHH----------hhhcCCceEEEEeecCCHHHH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQ----------KLLQKHQVFIVEGDLNDAPLL 185 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~----------~~~~~~~v~~~~~Dl~d~~~l 185 (476)
..+|+|||||||||||++|+++|+++|++|++++|....... ..+... ......+++++.+|+.|++.+
T Consensus 148 ~~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~-~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l 226 (508)
T 4f6l_B 148 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIA-WYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV 226 (508)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHH-HHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred CCCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHH-HHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence 456899999999999999999999999999999997652111 111111 112246899999999998777
Q ss_pred HHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC-----CCCCCCCCC
Q 011841 186 TKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL-----NTQVPFSES 260 (476)
Q Consensus 186 ~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~-----~~~~~~~E~ 260 (476)
. ++. ++|+|||+||.... ..++...+++|+.++.+++++|++ +.+ +|||+||.++ |. ....+++|+
T Consensus 227 ~-~~~--~~D~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~-~~~-~~v~iSS~~v-G~~~~~~~~~~~~~E~ 297 (508)
T 4f6l_B 227 V-LPE--NMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQ-HHA-RLIYVSTISV-GTYFDIDTEDVTFSEA 297 (508)
T ss_dssp C-CSS--CCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHT-TTC-EEEEEEESCT-TSEECTTCSCCEECTT
T ss_pred C-Ccc--CCCEEEECCceecC---CCCHHHHhhhHHHHHHHHHHHHHh-CCC-cEEEeCChhh-ccCCccCCcCcccccc
Confidence 7 444 45999999998542 345667889999999999999998 444 9999999999 43 234578888
Q ss_pred CCC--CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC-------CcHHHHHHHHHcCCceEEEeeCC
Q 011841 261 HRT--DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-------MAYFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 261 ~~~--~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~ 331 (476)
++. ..+.+.|+.+|+++|.+++++.+ .|++++++||+.|||++.... ..+..+++.+..++.++. +
T Consensus 298 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~ 372 (508)
T 4f6l_B 298 DVYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGV----S 372 (508)
T ss_dssp CSCSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCCCTTCTTCHHHHHHHHHTTCSEEET----T
T ss_pred cccccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcccCCcchHHHHHHHHHHHHcCCCCC----C
Confidence 763 24789999999999999999865 699999999999999976442 235677888877776643 2
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCC-
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN- 410 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~- 410 (476)
++++.++|+|++|+|++++.++.++. .+ ++||+++++++++.|+++.+.+.. ....+.+.+
T Consensus 373 ~g~~~~~~v~v~DvA~ai~~~~~~~~-~~------------~~~nl~~~~~~s~~el~~~i~~~~-----~~~~~~~~w~ 434 (508)
T 4f6l_B 373 MAEMPVDFSFVDTTARQIVALAQVNT-PQ------------IIYHVLSPNKMPVKSLLECVKRKE-----IELVSDESFN 434 (508)
T ss_dssp GGGSEEECEEHHHHHHHHHHHTTBCC-SC------------SEEEESCSCEEEHHHHHHHHHSSC-----CEEECHHHHH
T ss_pred ccCceEEEEcHHHHHHHHHHHHhCCC-CC------------CEEEeCCCCCCCHHHHHHHHHHcC-----CcccCHHHHH
Confidence 36889999999999999999998876 32 899999999999999999999754 222221110
Q ss_pred ------------------CCCCcccccHHHHH---HhcCCCcccCHHHHHHHHHHHHHHHcCCC
Q 011841 411 ------------------GDVPYTHANVSLAY---KDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 411 ------------------~~~~~~~~d~~ka~---~~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 453 (476)
.......+|+++.+ +++||++...-++.++++++|+++.++..
T Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~~~~~ 498 (508)
T 4f6l_B 435 EILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTIFNKA 498 (508)
T ss_dssp HHHHTTCCHHHHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCCccchhcccccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 01123345655544 66899988666889999999999998743
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-34 Score=277.62 Aligned_cols=261 Identities=17% Similarity=0.164 Sum_probs=204.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|+||||||+||||++++++|+++ |++|++++|..+... .. ...+++++.+|++|++++.++++++ |+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----~l-----~~~~~~~~~~D~~d~~~l~~~~~~~--d~ 69 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS----TL-----ADQGVEVRHGDYNQPESLQKAFAGV--SK 69 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH----HH-----HHTTCEEEECCTTCHHHHHHHTTTC--SE
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh----HH-----hhcCCeEEEeccCCHHHHHHHHhcC--CE
Confidence 57999999999999999999999 999999999654221 11 1247899999999999999999976 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
|||+|+.. . . . ++|+.++.+++++|++.+++ +||++||.++|. . ...|+.+|.+
T Consensus 70 vi~~a~~~-~----~---~--~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~--------------~-~~~y~~~K~~ 123 (287)
T 2jl1_A 70 LLFISGPH-Y----D---N--TLLIVQHANVVKAARDAGVK-HIAYTGYAFAEE--------------S-IIPLAHVHLA 123 (287)
T ss_dssp EEECCCCC-S----C---H--HHHHHHHHHHHHHHHHTTCS-EEEEEEETTGGG--------------C-CSTHHHHHHH
T ss_pred EEEcCCCC-c----C---c--hHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCC--------------C-CCchHHHHHH
Confidence 99999862 1 1 1 57999999999999999986 999999998862 1 1369999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
+|.++++ +|++++++||+.++|+... .++..+...+... . ..+++.++|+|++|+|++++.+++++
T Consensus 124 ~E~~~~~----~~~~~~ilrp~~~~~~~~~------~~~~~~~~~~~~~-~---~~~~~~~~~i~~~Dva~~~~~~~~~~ 189 (287)
T 2jl1_A 124 TEYAIRT----TNIPYTFLRNALYTDFFVN------EGLRASTESGAIV-T---NAGSGIVNSVTRNELALAAATVLTEE 189 (287)
T ss_dssp HHHHHHH----TTCCEEEEEECCBHHHHSS------GGGHHHHHHTEEE-E---SCTTCCBCCBCHHHHHHHHHHHHTSS
T ss_pred HHHHHHH----cCCCeEEEECCEeccccch------hhHHHHhhCCcee-c---cCCCCccCccCHHHHHHHHHHHhcCC
Confidence 9999865 6999999999998886421 1122233223332 3 34567889999999999999999876
Q ss_pred CcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCC-------CCC----------------
Q 011841 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRN-------GDV---------------- 413 (476)
Q Consensus 357 ~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~-------~~~---------------- 413 (476)
...+ ++||+++++.+|+.|+++.+.+.+|.+..+...+.... +..
T Consensus 190 ~~~g------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (287)
T 2jl1_A 190 GHEN------------KTYNLVSNQPWTFDELAQILSEVSGKKVVHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISK 257 (287)
T ss_dssp SCTT------------EEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CCCC------------cEEEecCCCcCCHHHHHHHHHHHHCCcceEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhC
Confidence 4332 89999999999999999999999998866554442100 111
Q ss_pred CcccccHHHHHHhcCCCcccCHHHHHHHHHH
Q 011841 414 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVK 444 (476)
Q Consensus 414 ~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~ 444 (476)
.....|+++++++|| |.++++|+|+++++
T Consensus 258 ~~~~~~~~~~~~~lG--~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 258 GEASKTSDDLQKLIG--SLTPLKETVKQALK 286 (287)
T ss_dssp TTTCCCCSHHHHHHS--SCCCHHHHHHHHHT
T ss_pred CCCcCCchHHHHHhC--CCCCHHHHHHHHhc
Confidence 234567899999999 77799999999875
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=292.95 Aligned_cols=270 Identities=19% Similarity=0.233 Sum_probs=205.4
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHC---CCeEEEEeCCCCCCCchHHHHHHh-------------hhcCCceEEEEe
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKR---GDGVLGLDNFNSYYDPSLKRARQK-------------LLQKHQVFIVEG 177 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~---G~~V~~~~R~~~~~~~~~~~~~~~-------------~~~~~~v~~~~~ 177 (476)
...++|+||||||+||||++|+++|+++ |++|++++|..+... ...+.... .....+++++.+
T Consensus 69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 147 (478)
T 4dqv_A 69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDED-ARRRLEKTFDSGDPELLRHFKELAADRLEVVAG 147 (478)
T ss_dssp CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHH-HHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHH-HHHHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence 3357899999999999999999999999 999999999764211 11111110 011358999999
Q ss_pred ecC------CHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC
Q 011841 178 DLN------DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (476)
Q Consensus 178 Dl~------d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~ 251 (476)
|++ |.+.+.++++++ |+|||+||.... .++...+++|+.++.+|+++|++.+++ +|||+||.++|+.
T Consensus 148 Dl~~~~~gld~~~~~~~~~~~--D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~~V~iSS~~v~~~ 220 (478)
T 4dqv_A 148 DKSEPDLGLDQPMWRRLAETV--DLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLK-PFTYVSTADVGAA 220 (478)
T ss_dssp CTTSGGGGCCHHHHHHHHHHC--CEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCC-CEEEEEEGGGGTT
T ss_pred ECCCcccCCCHHHHHHHHcCC--CEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEEeehhhcCc
Confidence 998 667899999876 999999998654 556678899999999999999999886 9999999999998
Q ss_pred CCCCCCCCCCCCCCCC-----------ChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCC-----CCCCcHHHHH
Q 011841 252 NTQVPFSESHRTDQPA-----------SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG-----RPDMAYFFFT 315 (476)
Q Consensus 252 ~~~~~~~E~~~~~~p~-----------~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~-----~~~~~~~~~~ 315 (476)
....++.|+++. .|. +.|+.+|+++|.+++++.++.|++++++|||+|||+.. +...++..++
T Consensus 221 ~~~~~~~E~~~~-~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~ 299 (478)
T 4dqv_A 221 IEPSAFTEDADI-RVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQLNMSDWVTRMV 299 (478)
T ss_dssp SCTTTCCSSSCH-HHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSCCCTTBHHHHHH
T ss_pred cCCCCcCCcccc-cccCcccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCcCCHHHHHHHHH
Confidence 777788888754 232 34999999999999999988899999999999999854 2223444555
Q ss_pred HHHHcCCceE--EEeeCCC---CceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCc--ccHHHH
Q 011841 316 KDILQGKTID--VYKTQDD---REVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSP--VPVGRL 388 (476)
Q Consensus 316 ~~~~~g~~~~--~~~~~~~---~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~--vt~~el 388 (476)
......+..+ ++...++ ++..++|+|++|+|++++.++.+........ .++||++++++ +++.|+
T Consensus 300 ~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~--------~~~ynv~~~~~~~~s~~el 371 (478)
T 4dqv_A 300 LSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAG--------FATYHVMNPHDDGIGLDEY 371 (478)
T ss_dssp HHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCS--------EEEEEESCCCCSSCSHHHH
T ss_pred HHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCC--------CceEEecCCCCCCcCHHHH
Confidence 5444433222 1111111 2678899999999999999998732111111 18999999988 999999
Q ss_pred HHHHHHHhCCCcc
Q 011841 389 VSILENLLNTKAK 401 (476)
Q Consensus 389 ~~~l~~~~g~~~~ 401 (476)
++.+.+. |.+..
T Consensus 372 ~~~l~~~-g~~~~ 383 (478)
T 4dqv_A 372 VDWLIEA-GYPIR 383 (478)
T ss_dssp HHHHHHT-TCSCE
T ss_pred HHHHHHc-CCCcc
Confidence 9999995 76543
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=272.99 Aligned_cols=261 Identities=16% Similarity=0.119 Sum_probs=199.0
Q ss_pred EEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+||||||+||||++++++|+++ |++|++++|..+... .. ...+++++.+|++|++++.++++++ |+|
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----~~-----~~~~~~~~~~D~~d~~~~~~~~~~~--d~v 69 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ----AL-----AAQGITVRQADYGDEAALTSALQGV--EKL 69 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH----HH-----HHTTCEEEECCTTCHHHHHHHTTTC--SEE
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh----hh-----hcCCCeEEEcCCCCHHHHHHHHhCC--CEE
Confidence 4899999999999999999999 999999999654321 11 1237899999999999999999977 999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
||+|+... +.|+.++.+++++|++.+++ +||++||.++|. . ...|+.+|.++
T Consensus 70 i~~a~~~~------------~~~~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~--------------~-~~~y~~sK~~~ 121 (286)
T 2zcu_A 70 LLISSSEV------------GQRAPQHRNVINAAKAAGVK-FIAYTSLLHADT--------------S-PLGLADEHIET 121 (286)
T ss_dssp EECC--------------------CHHHHHHHHHHHHTCC-EEEEEEETTTTT--------------C-CSTTHHHHHHH
T ss_pred EEeCCCCc------------hHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCC--------------C-cchhHHHHHHH
Confidence 99998521 14889999999999999986 999999998871 1 13699999999
Q ss_pred HHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
|.++++ .|+++++|||+.++++.. .++..+.+++.+. . +++++.++|+|++|+|++++.+++++.
T Consensus 122 e~~~~~----~~~~~~ilrp~~~~~~~~-------~~~~~~~~~~~~~-~---~~~~~~~~~i~~~Dva~~~~~~~~~~~ 186 (286)
T 2zcu_A 122 EKMLAD----SGIVYTLLRNGWYSENYL-------ASAPAALEHGVFI-G---AAGDGKIASATRADYAAAAARVISEAG 186 (286)
T ss_dssp HHHHHH----HCSEEEEEEECCBHHHHH-------TTHHHHHHHTEEE-E---SCTTCCBCCBCHHHHHHHHHHHHHSSS
T ss_pred HHHHHH----cCCCeEEEeChHHhhhhH-------HHhHHhhcCCcee-c---cCCCCccccccHHHHHHHHHHHhcCCC
Confidence 998875 599999999988766521 1223333344443 3 346788999999999999999998765
Q ss_pred cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCC-------CCCC----------------C
Q 011841 358 KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR-------NGDV----------------P 414 (476)
Q Consensus 358 ~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~-------~~~~----------------~ 414 (476)
..+ ++||+++++.+|+.|+++.+.+.+|.+..+...+... .+.. .
T Consensus 187 ~~g------------~~~~i~~~~~~s~~e~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (286)
T 2zcu_A 187 HEG------------KVYELAGDSAWTLTQLAAELTKQSGKQVTYQNLSEADFAAALKSVGLPDGLADMLADSDVGASKG 254 (286)
T ss_dssp CTT------------CEEEECCSSCBCHHHHHHHHHHHHSSCCEEEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCC------------ceEEEeCCCcCCHHHHHHHHHHHHCCCCceeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 432 8999999999999999999999999876654444211 0111 1
Q ss_pred cccccHHHHHHhcCCCcccCHHHHHHHHHHHHH
Q 011841 415 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYV 447 (476)
Q Consensus 415 ~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~ 447 (476)
....|++++++.||| |.++++|+|+++++||.
T Consensus 255 ~~~~~~~~~~~~lg~-~~~~~~e~l~~~~~~~~ 286 (286)
T 2zcu_A 255 GLFDDSKTLSKLIGH-PTTTLAESVSHLFNVNN 286 (286)
T ss_dssp TTCCCCCHHHHHHTS-CCCCHHHHHHGGGC---
T ss_pred CCccCchHHHHHhCc-CCCCHHHHHHHHHhhcC
Confidence 245678999999997 45599999999999873
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=263.11 Aligned_cols=225 Identities=12% Similarity=0.099 Sum_probs=178.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+|+||||||+||||++|+++|+++|++|++++|..+..... ..+++++.+|++|.+++.++++++ |+
T Consensus 3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~~~--d~ 70 (227)
T 3dhn_A 3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE----------NEHLKVKKADVSSLDEVCEVCKGA--DA 70 (227)
T ss_dssp CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC----------CTTEEEECCCTTCHHHHHHHHTTC--SE
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc----------cCceEEEEecCCCHHHHHHHhcCC--CE
Confidence 358999999999999999999999999999999965433221 258999999999999999999976 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
|||+||... .+ ...+++|+.++.+++++|++.+++ +||++||.++|+..... ..|+++. .|.+.|+.+|.+
T Consensus 71 vi~~a~~~~-----~~-~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~~~~~~-~~~~~~~-~p~~~Y~~sK~~ 141 (227)
T 3dhn_A 71 VISAFNPGW-----NN-PDIYDETIKVYLTIIDGVKKAGVN-RFLMVGGAGSLFIAPGL-RLMDSGE-VPENILPGVKAL 141 (227)
T ss_dssp EEECCCC------------CCSHHHHHHHHHHHHHHHTTCS-EEEEECCSTTSEEETTE-EGGGTTC-SCGGGHHHHHHH
T ss_pred EEEeCcCCC-----CC-hhHHHHHHHHHHHHHHHHHHhCCC-EEEEeCChhhccCCCCC-ccccCCc-chHHHHHHHHHH
Confidence 999998632 11 236788999999999999999986 99999999987654432 3344444 678899999999
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
+|.+++.+.+++|+++++|||+.||||+.....+ ..+....+. . ++. ++|+|++|+|++++.+++++
T Consensus 142 ~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~~--------~~~~~~~~~---~-~~~-~~~i~~~Dva~ai~~~l~~~ 208 (227)
T 3dhn_A 142 GEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRY--------RLGKDDMIV---D-IVG-NSHISVEDYAAAMIDELEHP 208 (227)
T ss_dssp HHHHHHTGGGCCSSEEEEEECCSEEESCCCCCCC--------EEESSBCCC---C-TTS-CCEEEHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhccCccEEEEeCCcccCCCccccce--------eecCCCccc---C-CCC-CcEEeHHHHHHHHHHHHhCc
Confidence 9999999998889999999999999997654322 122323222 1 222 89999999999999999998
Q ss_pred CcCCCCCCCCCCCCCceEEEEcCCCcccHHH
Q 011841 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGR 387 (476)
Q Consensus 357 ~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~e 387 (476)
...+ ++|+++++++.++++
T Consensus 209 ~~~g------------~~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 209 KHHQ------------ERFTIGYLEHHHHHH 227 (227)
T ss_dssp CCCS------------EEEEEECCSCCC---
T ss_pred cccC------------cEEEEEeehhcccCC
Confidence 8665 999999999988863
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=267.17 Aligned_cols=235 Identities=22% Similarity=0.241 Sum_probs=196.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+|+||++|+++|+++|++|++++|...... ..+++++.+|++|.+.+.++++++ |+||
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~--d~vi 68 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA------------EAHEEIVACDLADAQAVHDLVKDC--DGII 68 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC------------CTTEEECCCCTTCHHHHHHHHTTC--SEEE
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc------------CCCccEEEccCCCHHHHHHHHcCC--CEEE
Confidence 58999999999999999999999999999999764311 136889999999999999999876 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCC-CCCCCCCCCCCCCCChHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~-~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
|+||.. ...+....+++|+.++.+++++|++.+++ +||++||.++|+... ..+++|+++. .|.+.|+.+|.++
T Consensus 69 ~~a~~~----~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~~~~~~~~~E~~~~-~~~~~Y~~sK~~~ 142 (267)
T 3ay3_A 69 HLGGVS----VERPWNDILQANIIGAYNLYEAARNLGKP-RIVFASSNHTIGYYPRTTRIDTEVPR-RPDSLYGLSKCFG 142 (267)
T ss_dssp ECCSCC----SCCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEEEEGGGSTTSBTTSCBCTTSCC-CCCSHHHHHHHHH
T ss_pred ECCcCC----CCCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCHHHhCCCCCCCCCCCCCCC-CCCChHHHHHHHH
Confidence 999975 23566789999999999999999998876 999999999998753 4578888876 7889999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
|.+++.+.+++|+++++|||+.+|+... ++...++|+|++|+|++++.+++++.
T Consensus 143 e~~~~~~~~~~gi~~~~lrp~~v~~~~~--------------------------~~~~~~~~~~~~dva~~~~~~~~~~~ 196 (267)
T 3ay3_A 143 EDLASLYYHKFDIETLNIRIGSCFPKPK--------------------------DARMMATWLSVDDFMRLMKRAFVAPK 196 (267)
T ss_dssp HHHHHHHHHTTCCCEEEEEECBCSSSCC--------------------------SHHHHHHBCCHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHcCCCEEEEeceeecCCCC--------------------------CCCeeeccccHHHHHHHHHHHHhCCC
Confidence 9999999888899999999999994210 13345679999999999999998765
Q ss_pred cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCcccCHHH
Q 011841 358 KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAA 437 (476)
Q Consensus 358 ~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~e 437 (476)
... ++||+.++. .....|..++ +.|||+|++++++
T Consensus 197 ~~~------------~~~~~~~~~--------------------------------~~~~~d~~~~-~~lg~~p~~~~~~ 231 (267)
T 3ay3_A 197 LGC------------TVVYGASAN--------------------------------TESWWDNDKS-AFLGWVPQDSSEI 231 (267)
T ss_dssp CCE------------EEEEECCSC--------------------------------SSCCBCCGGG-GGGCCCCCCCGGG
T ss_pred CCc------------eeEecCCCc--------------------------------cccccCHHHH-HHcCCCCCCCHHH
Confidence 422 788876532 1234667777 8899999999999
Q ss_pred HHHHHHH
Q 011841 438 GLRKFVK 444 (476)
Q Consensus 438 ~l~~~v~ 444 (476)
+++++.+
T Consensus 232 ~~~~~~~ 238 (267)
T 3ay3_A 232 WREEIEQ 238 (267)
T ss_dssp GHHHHHH
T ss_pred HHHHHHh
Confidence 9988754
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=284.42 Aligned_cols=254 Identities=22% Similarity=0.377 Sum_probs=211.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
|+|||||||||||++|+++|+++|+ +|++++|. .|.+++.++++++ |+|
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~----------------------------~d~~~l~~~~~~~--d~V 50 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ----------------------------TKEEELESALLKA--DFI 50 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT----------------------------CCHHHHHHHHHHC--SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC----------------------------CCHHHHHHHhccC--CEE
Confidence 6899999999999999999999998 88887762 6789999999976 999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
||+||.... +++...+++|+.++.+|+++|++.+++++|||+||.++|+ .+.|+.+|.++
T Consensus 51 ih~a~~~~~----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~----------------~~~Y~~sK~~~ 110 (369)
T 3st7_A 51 VHLAGVNRP----EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ----------------DNPYGESKLQG 110 (369)
T ss_dssp EECCCSBCT----TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS----------------CSHHHHHHHHH
T ss_pred EECCcCCCC----CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC----------------CCCchHHHHHH
Confidence 999997543 4566677889999999999999999866999999999985 46899999999
Q ss_pred HHHHHHHHHHhCCcEEEEeeCcccCCCCCCC--CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
|.+++++++++|++++++||++||||+..++ .++..++..+..+.++.+. ++++.++|+|++|+|++++.++++
T Consensus 111 E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~v~Dva~~~~~~l~~ 186 (369)
T 3st7_A 111 EQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNSVIATFCYKIARNEEIQVN----DRNVELTLNYVDDIVAEIKRAIEG 186 (369)
T ss_dssp HHHHHHHHHHHCCCEEEEEECEEECTTCCTTSSCHHHHHHHHHHTTCCCCCS----CTTCEEEEEEHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEEECCceeCCCCCCCcchHHHHHHHHHHcCCCeEec----CCCeEEEEEEHHHHHHHHHHHHhC
Confidence 9999999999999999999999999987653 5778889999999887654 578899999999999999999998
Q ss_pred cCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCcccCH
Q 011841 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDL 435 (476)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l 435 (476)
+....+ ++||+++++.+|+.|+++.+.+.+|.+......+.+ + ..........|||.|+.++
T Consensus 187 ~~~~~~-----------~~~~i~~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~---~----~~~~~l~~~~l~~~p~~~~ 248 (369)
T 3st7_A 187 TPTIEN-----------GVPTVPNVFKVTLGEIVDLLYKFKQSRLDRTLPKLD---N----LFEKDLYSTYLSYLPSTDF 248 (369)
T ss_dssp CCCEET-----------TEECCSCCEEEEHHHHHHHHHHHHHHHHHTCCCCTT---S----HHHHHHHHHHHHTSCTTCS
T ss_pred CcccCC-----------ceEEeCCCCceeHHHHHHHHHHHhCCCcccccCCCC---C----HHHHHHHHHHhcccCCcce
Confidence 765312 899999999999999999999999987543322211 1 1112334456899998887
Q ss_pred HHHHHHHHH
Q 011841 436 AAGLRKFVK 444 (476)
Q Consensus 436 ~e~l~~~v~ 444 (476)
+++++...+
T Consensus 249 ~~~l~~~~D 257 (369)
T 3st7_A 249 SYPLLMNVD 257 (369)
T ss_dssp CCCCCEEEE
T ss_pred eechhhccC
Confidence 776655444
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-32 Score=274.34 Aligned_cols=288 Identities=13% Similarity=0.091 Sum_probs=207.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+|+||||||||+||++|++.|+++|++|++++|..+....... ....+...+++++.+|+.|.+++.++++..++|+
T Consensus 9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~--~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 86 (346)
T 3i6i_A 9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAK--IFKALEDKGAIIVYGLINEQEAMEKILKEHEIDI 86 (346)
T ss_dssp --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHH--HHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCE
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHH--HHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCE
Confidence 45799999999999999999999999999999997643211111 1122334589999999999999999999445599
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
|||+|+. .|+.++.+|+++|++.+ ++ +||+ | +||. +.+|.++. .|...|+.+|.
T Consensus 87 Vi~~a~~---------------~n~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~----~~~e~~~~-~p~~~y~~sK~ 141 (346)
T 3i6i_A 87 VVSTVGG---------------ESILDQIALVKAMKAVGTIK-RFLP-S---EFGH----DVNRADPV-EPGLNMYREKR 141 (346)
T ss_dssp EEECCCG---------------GGGGGHHHHHHHHHHHCCCS-EEEC-S---CCSS----CTTTCCCC-TTHHHHHHHHH
T ss_pred EEECCch---------------hhHHHHHHHHHHHHHcCCce-EEee-c---ccCC----CCCccCcC-CCcchHHHHHH
Confidence 9999986 27888999999999999 75 8885 4 4543 24455544 67789999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
++|.++++ .|++++++|||.++|...... . ........++.+.++ ++++..++|+|++|+|++++.++.+
T Consensus 142 ~~e~~l~~----~g~~~tivrpg~~~g~~~~~~-~--~~~~~~~~~~~~~~~---g~g~~~~~~i~~~Dva~~~~~~l~~ 211 (346)
T 3i6i_A 142 RVRQLVEE----SGIPFTYICCNSIASWPYYNN-I--HPSEVLPPTDFFQIY---GDGNVKAYFVAGTDIGKFTMKTVDD 211 (346)
T ss_dssp HHHHHHHH----TTCCBEEEECCEESSCCCSCC--------CCCCSSCEEEE---TTSCCCEEEECHHHHHHHHHHHTTC
T ss_pred HHHHHHHH----cCCCEEEEEecccccccCccc-c--ccccccCCCceEEEc---cCCCceEEecCHHHHHHHHHHHHhC
Confidence 99998886 699999999999999753321 1 111122256667777 7889999999999999999999998
Q ss_pred cCcCCCCCCCCCCCCCceEEEEcC-CCcccHHHHHHHHHHHhCCCccceeecCCCC-------CC---------------
Q 011841 356 AGKSTGSGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNTKAKKHVIRMPRN-------GD--------------- 412 (476)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~i~ni~~-~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~-------~~--------------- 412 (476)
+...+ ++||+.+ ++.+|+.|+++.+++.+|.+..+...+.... +.
T Consensus 212 ~~~~~------------~~~~i~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 279 (346)
T 3i6i_A 212 VRTLN------------KSVHFRPSCNCLNINELASVWEKKIGRTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIK 279 (346)
T ss_dssp GGGTT------------EEEECCCGGGEECHHHHHHHHHHHHTSCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTT
T ss_pred ccccC------------eEEEEeCCCCCCCHHHHHHHHHHHHCCCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhcc
Confidence 76543 8899985 5899999999999999999877666552211 00
Q ss_pred CCcccccH-----HHHHHh-cCCCcccCHHHHHHHHHHHHHHHcCCCC
Q 011841 413 VPYTHANV-----SLAYKD-FGYKPTTDLAAGLRKFVKWYVSYYGIQP 454 (476)
Q Consensus 413 ~~~~~~d~-----~ka~~~-LG~~p~~~l~e~l~~~v~~~~~~~~~~~ 454 (476)
.....++. .++.+. -+++|+ +++|.|+++++|++++++.++
T Consensus 280 g~~~~~~~~~~~~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~~~~~~ 326 (346)
T 3i6i_A 280 GCQVNFSIDGPEDVEVTTLYPEDSFR-TVEECFGEYIVKMEEKQPTAD 326 (346)
T ss_dssp CTTTSSCCCSTTEEEHHHHSTTCCCC-CHHHHHHHHHCC---------
T ss_pred CCCcccccCCCCcccHHHhCCCCCcC-cHHHHHHHHHHHhhccccccc
Confidence 00011111 122332 356665 899999999999999887543
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-31 Score=254.60 Aligned_cols=210 Identities=20% Similarity=0.184 Sum_probs=179.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++|+||||||+|+||++++++|+++|++|++++|...... ..+++++.+|++|.+++.++++++ |+
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~~~--D~ 67 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA------------GPNEECVQCDLADANAVNAMVAGC--DG 67 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC------------CTTEEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc------------CCCCEEEEcCCCCHHHHHHHHcCC--CE
Confidence 3578999999999999999999999999999999765332 348999999999999999999966 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCC-CCCCCCCCCCCCCCCChHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN-TQVPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~-~~~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
||||||.. ..++.+..+++|+.|+.+++++|++.+.+ +||++||..+||.. ...+++|+.+. .+.+.|+.+|.
T Consensus 68 vi~~Ag~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~g~~~~~~~~~e~~~~-~~~~~Y~~sK~ 141 (267)
T 3rft_A 68 IVHLGGIS----VEKPFEQILQGNIIGLYNLYEAARAHGQP-RIVFASSNHTIGYYPQTERLGPDVPA-RPDGLYGVSKC 141 (267)
T ss_dssp EEECCSCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGTTSBTTSCBCTTSCC-CCCSHHHHHHH
T ss_pred EEECCCCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcchHHhCCCCCCCCCCCCCCC-CCCChHHHHHH
Confidence 99999983 34667889999999999999999999875 99999999999754 34467777766 78899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
++|.+++.+.+++|+++++|||+.|||+. .++...++|++++|+++++..+++.
T Consensus 142 ~~e~~~~~~a~~~g~~~~~vr~~~v~~~~--------------------------~~~~~~~~~~~~~d~a~~~~~~~~~ 195 (267)
T 3rft_A 142 FGENLARMYFDKFGQETALVRIGSCTPEP--------------------------NNYRMLSTWFSHDDFVSLIEAVFRA 195 (267)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECBCSSSC--------------------------CSTTHHHHBCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCeEEEEEeecccCCC--------------------------CCCCceeeEEcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999872 2345556789999999999999988
Q ss_pred cCcCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
+.... .++++.++++.+
T Consensus 196 ~~~~~------------~~~~~~s~~~~~ 212 (267)
T 3rft_A 196 PVLGC------------PVVWGASANDAG 212 (267)
T ss_dssp SCCCS------------CEEEECCCCTTC
T ss_pred CCCCc------------eEEEEeCCCCCC
Confidence 76543 678888766443
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-31 Score=247.15 Aligned_cols=209 Identities=13% Similarity=0.091 Sum_probs=172.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-HHHHHHhhccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~~~d~V 197 (476)
|+||||||+|+||++++++|+++|++|++++|..+.... ..+++++.+|++| .+++.++++++ |+|
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-----------~~~~~~~~~D~~d~~~~~~~~~~~~--d~v 67 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ-----------YNNVKAVHFDVDWTPEEMAKQLHGM--DAI 67 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC-----------CTTEEEEECCTTSCHHHHHTTTTTC--SEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh-----------cCCceEEEecccCCHHHHHHHHcCC--CEE
Confidence 689999999999999999999999999999996543322 1589999999999 99999999976 999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
|||||.... ..+++|+.++.+++++|++.+++ +||++||.++++.. ++.| ++. .|...|+.+|.++
T Consensus 68 i~~ag~~~~--------~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~~---~~~e-~~~-~~~~~Y~~sK~~~ 133 (219)
T 3dqp_A 68 INVSGSGGK--------SLLKVDLYGAVKLMQAAEKAEVK-RFILLSTIFSLQPE---KWIG-AGF-DALKDYYIAKHFA 133 (219)
T ss_dssp EECCCCTTS--------SCCCCCCHHHHHHHHHHHHTTCC-EEEEECCTTTTCGG---GCCS-HHH-HHTHHHHHHHHHH
T ss_pred EECCcCCCC--------CcEeEeHHHHHHHHHHHHHhCCC-EEEEECcccccCCC---cccc-ccc-ccccHHHHHHHHH
Confidence 999997442 25667999999999999999986 99999998877643 3444 322 5678999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
|.+++ +..|+++++|||+.+||+..... + .. +...+++++++|+|++++.+++++.
T Consensus 134 e~~~~---~~~~i~~~ilrp~~v~g~~~~~~---------------~-~~-----~~~~~~~i~~~Dva~~i~~~l~~~~ 189 (219)
T 3dqp_A 134 DLYLT---KETNLDYTIIQPGALTEEEATGL---------------I-DI-----NDEVSASNTIGDVADTIKELVMTDH 189 (219)
T ss_dssp HHHHH---HSCCCEEEEEEECSEECSCCCSE---------------E-EE-----SSSCCCCEEHHHHHHHHHHHHTCGG
T ss_pred HHHHH---hccCCcEEEEeCceEecCCCCCc---------------c-cc-----CCCcCCcccHHHHHHHHHHHHhCcc
Confidence 99986 45699999999999999853321 1 12 3667899999999999999999876
Q ss_pred cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHH
Q 011841 358 KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSI 391 (476)
Q Consensus 358 ~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~ 391 (476)
..+ ++||++++. .++.|+++.
T Consensus 190 ~~g------------~~~~i~~g~-~~~~e~~~~ 210 (219)
T 3dqp_A 190 SIG------------KVISMHNGK-TAIKEALES 210 (219)
T ss_dssp GTT------------EEEEEEECS-EEHHHHHHT
T ss_pred ccC------------cEEEeCCCC-ccHHHHHHH
Confidence 543 999998875 999998764
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=250.62 Aligned_cols=224 Identities=14% Similarity=0.169 Sum_probs=172.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
|+||||||||+||++|+++|+++ |++|++++|+.+.... +...+++++.+|++|++++.++++++ |+|
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~---------~~~~~v~~~~~D~~d~~~l~~~~~~~--d~v 69 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPD---------DWRGKVSVRQLDYFNQESMVEAFKGM--DTV 69 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCG---------GGBTTBEEEECCTTCHHHHHHHTTTC--SEE
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHH---------hhhCCCEEEEcCCCCHHHHHHHHhCC--CEE
Confidence 67999999999999999999998 9999999996543221 23458999999999999999999987 999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
||+|+..... ..|+.++.+++++|++.+++ +||++||.+. ... .+. .+...+..+
T Consensus 70 i~~a~~~~~~----------~~~~~~~~~l~~aa~~~gv~-~iv~~Ss~~~---~~~----------~~~-~~~~~~~~~ 124 (289)
T 3e48_A 70 VFIPSIIHPS----------FKRIPEVENLVYAAKQSGVA-HIIFIGYYAD---QHN----------NPF-HMSPYFGYA 124 (289)
T ss_dssp EECCCCCCSH----------HHHHHHHHHHHHHHHHTTCC-EEEEEEESCC---STT----------CCS-TTHHHHHHH
T ss_pred EEeCCCCccc----------hhhHHHHHHHHHHHHHcCCC-EEEEEcccCC---CCC----------CCC-ccchhHHHH
Confidence 9999874321 24899999999999999986 9999999442 111 111 122222334
Q ss_pred HHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 278 EEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 278 E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
|..+ +..|+++++|||+.+||+. . .++..+..+... .+ ..++..++|++++|+|++++.++.++.
T Consensus 125 e~~~----~~~g~~~~ilrp~~~~~~~------~-~~~~~~~~~~~~-~~---~~g~~~~~~i~~~Dva~~~~~~l~~~~ 189 (289)
T 3e48_A 125 SRLL----STSGIDYTYVRMAMYMDPL------K-PYLPELMNMHKL-IY---PAGDGRINYITRNDIARGVIAIIKNPD 189 (289)
T ss_dssp HHHH----HHHCCEEEEEEECEESTTH------H-HHHHHHHHHTEE-CC---CCTTCEEEEECHHHHHHHHHHHHHCGG
T ss_pred HHHH----HHcCCCEEEEecccccccc------H-HHHHHHHHCCCE-ec---CCCCceeeeEEHHHHHHHHHHHHcCCC
Confidence 4433 3469999999999999972 2 233344433333 22 347889999999999999999999876
Q ss_pred cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeec
Q 011841 358 KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 406 (476)
Q Consensus 358 ~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~ 406 (476)
..+ ++||++ ++.+|+.|+++.+.+.+|++..+...+
T Consensus 190 ~~g------------~~~~~~-~~~~s~~e~~~~~~~~~g~~~~~~~~~ 225 (289)
T 3e48_A 190 TWG------------KRYLLS-GYSYDMKELAAILSEASGTEIKYEPVS 225 (289)
T ss_dssp GTT------------CEEEEC-CEEEEHHHHHHHHHHHHTSCCEECCCC
T ss_pred cCC------------ceEEeC-CCcCCHHHHHHHHHHHHCCceeEEeCC
Confidence 543 899999 999999999999999999876554443
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.9e-30 Score=243.29 Aligned_cols=216 Identities=17% Similarity=0.160 Sum_probs=172.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCce-EEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQV-FIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ... ....++ +++.+|++ +.+.+++.++
T Consensus 19 l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~----~~~-----~~~~~~~~~~~~Dl~--~~~~~~~~~~-- 85 (236)
T 3e8x_A 19 FQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQ----GPE-----LRERGASDIVVANLE--EDFSHAFASI-- 85 (236)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGG----HHH-----HHHTTCSEEEECCTT--SCCGGGGTTC--
T ss_pred cCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHH----HHH-----HHhCCCceEEEcccH--HHHHHHHcCC--
Confidence 578999999999999999999999999999999996432 111 122378 99999999 7778888866
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (476)
|+||||||... ..+++..+++|+.++.+++++|++.+++ +||++||.+.+.. +.++ .+...|+.+|
T Consensus 86 D~vi~~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~-------~~~~--~~~~~Y~~sK 151 (236)
T 3e8x_A 86 DAVVFAAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSSVGTVDP-------DQGP--MNMRHYLVAK 151 (236)
T ss_dssp SEEEECCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECCTTCSCG-------GGSC--GGGHHHHHHH
T ss_pred CEEEECCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCC-EEEEEecCCCCCC-------CCCh--hhhhhHHHHH
Confidence 99999999743 3578889999999999999999999876 9999999655432 1111 4567899999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHh
Q 011841 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354 (476)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~ 354 (476)
.++|.+++ ..|+++++|||+.+||+... ..+... ..+...+++++++|+|++++.+++
T Consensus 152 ~~~e~~~~----~~gi~~~~lrpg~v~~~~~~---------------~~~~~~---~~~~~~~~~i~~~Dva~~~~~~~~ 209 (236)
T 3e8x_A 152 RLADDELK----RSSLDYTIVRPGPLSNEEST---------------GKVTVS---PHFSEITRSITRHDVAKVIAELVD 209 (236)
T ss_dssp HHHHHHHH----HSSSEEEEEEECSEECSCCC---------------SEEEEE---SSCSCCCCCEEHHHHHHHHHHHTT
T ss_pred HHHHHHHH----HCCCCEEEEeCCcccCCCCC---------------CeEEec---cCCCcccCcEeHHHHHHHHHHHhc
Confidence 99999887 46999999999999998532 122223 234557899999999999999999
Q ss_pred hcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHH
Q 011841 355 TAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILE 393 (476)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~ 393 (476)
++...+ ++||++++ .+++.|+++.+.
T Consensus 210 ~~~~~g------------~~~~v~~~-~~~~~e~~~~i~ 235 (236)
T 3e8x_A 210 QQHTIG------------KTFEVLNG-DTPIAKVVEQLG 235 (236)
T ss_dssp CGGGTT------------EEEEEEEC-SEEHHHHHHTC-
T ss_pred CccccC------------CeEEEeCC-CcCHHHHHHHhc
Confidence 876443 99999888 599999998765
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=246.08 Aligned_cols=236 Identities=15% Similarity=0.125 Sum_probs=180.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
++|+||||||||+||++++++|+++| ++|++++|+.+.. ....+...+++++.+|++|++++.++++++ |
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~-------~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~--d 74 (299)
T 2wm3_A 4 DKKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKK-------AAKELRLQGAEVVQGDQDDQVIMELALNGA--Y 74 (299)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSH-------HHHHHHHTTCEEEECCTTCHHHHHHHHTTC--S
T ss_pred CCCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCH-------HHHHHHHCCCEEEEecCCCHHHHHHHHhcC--C
Confidence 35899999999999999999999999 9999999965421 011122347999999999999999999987 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
+|||+++.... . ..+.|+.++.+++++|++.+++ +||++|+.++|+.... .+...|+.+|.
T Consensus 75 ~vi~~a~~~~~----~----~~~~~~~~~~~~~~aa~~~gv~-~iv~~S~~~~~~~~~~----------~~~~~y~~sK~ 135 (299)
T 2wm3_A 75 ATFIVTNYWES----C----SQEQEVKQGKLLADLARRLGLH-YVVYSGLENIKKLTAG----------RLAAAHFDGKG 135 (299)
T ss_dssp EEEECCCHHHH----T----CHHHHHHHHHHHHHHHHHHTCS-EEEECCCCCHHHHTTT----------SCCCHHHHHHH
T ss_pred EEEEeCCCCcc----c----cchHHHHHHHHHHHHHHHcCCC-EEEEEcCccccccCCC----------cccCchhhHHH
Confidence 99999985211 0 1346788999999999999986 9999998888763221 23478999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHH-HHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHh
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKD-ILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~ 354 (476)
++|.++++ +|+++++|||+.+||+.... +... ...++...+. . ..++..++|+|++|+|++++.++.
T Consensus 136 ~~e~~~~~----~gi~~~ilrp~~~~~~~~~~------~~~~~~~~g~~~~~~-~-~~~~~~~~~i~~~Dva~~~~~~l~ 203 (299)
T 2wm3_A 136 EVEEYFRD----IGVPMTSVRLPCYFENLLSH------FLPQKAPDGKSYLLS-L-PTGDVPMDGMSVSDLGPVVLSLLK 203 (299)
T ss_dssp HHHHHHHH----HTCCEEEEECCEEGGGGGTT------TCCEECTTSSSEEEC-C-CCTTSCEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHH----CCCCEEEEeecHHhhhchhh------cCCcccCCCCEEEEE-e-cCCCCccceecHHHHHHHHHHHHc
Confidence 99998876 59999999999999974321 1111 1223322221 1 236778999999999999999998
Q ss_pred hcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCcccee
Q 011841 355 TAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV 404 (476)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~ 404 (476)
++....| ++||+++ +.+|+.|+++.+.+.+|++..+..
T Consensus 204 ~~~~~~g-----------~~~~~~g-~~~s~~e~~~~~~~~~g~~~~~~~ 241 (299)
T 2wm3_A 204 MPEKYVG-----------QNIGLST-CRHTAEEYAALLTKHTRKVVHDAK 241 (299)
T ss_dssp SHHHHTT-----------CEEECCS-EEECHHHHHHHHHHHHSSCEEECC
T ss_pred ChhhhCC-----------eEEEeee-ccCCHHHHHHHHHHHHCCCceeEe
Confidence 7532222 8999987 679999999999999998765443
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=235.65 Aligned_cols=218 Identities=11% Similarity=0.023 Sum_probs=161.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||||+||++|+++|+++|++|++++|+.+ ....+...+++++.+|++|.++ +.++++ |+||
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~---------~~~~~~~~~~~~~~~D~~d~~~--~~~~~~--d~vi 67 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQ---------KAADRLGATVATLVKEPLVLTE--ADLDSV--DAVV 67 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH---------HHHHHTCTTSEEEECCGGGCCH--HHHTTC--SEEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccc---------ccccccCCCceEEecccccccH--hhcccC--CEEE
Confidence 68999999999999999999999999999999431 1122234589999999999887 677766 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCC---CCCCCCCCCCCCCChHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ---VPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~---~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
|+||.... .. ....|+.++.+++++|++.+ + +||++||.+.+..... .+.+|+..+ .|.+.|+.+|.
T Consensus 68 ~~ag~~~~---~~----~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~sK~ 137 (224)
T 3h2s_A 68 DALSVPWG---SG----RGYLHLDFATHLVSLLRNSD-T-LAVFILGSASLAMPGADHPMILDFPESA-ASQPWYDGALY 137 (224)
T ss_dssp ECCCCCTT---SS----CTHHHHHHHHHHHHTCTTCC-C-EEEEECCGGGSBCTTCSSCGGGGCCGGG-GGSTTHHHHHH
T ss_pred ECCccCCC---cc----hhhHHHHHHHHHHHHHHHcC-C-cEEEEecceeeccCCCCccccccCCCCC-ccchhhHHHHH
Confidence 99998521 11 24679999999999999998 5 9999999865543322 134444433 45789999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
++|. ++.+.+..|+++++|||+.+||++.... +. .....+.. .....++++++|+|++++.++++
T Consensus 138 ~~e~-~~~~~~~~~i~~~ivrp~~v~g~~~~~~-~~-------~~~~~~~~------~~~~~~~i~~~DvA~~~~~~l~~ 202 (224)
T 3h2s_A 138 QYYE-YQFLQMNANVNWIGISPSEAFPSGPATS-YV-------AGKDTLLV------GEDGQSHITTGNMALAILDQLEH 202 (224)
T ss_dssp HHHH-HHHHTTCTTSCEEEEEECSBCCCCCCCC-EE-------EESSBCCC------CTTSCCBCCHHHHHHHHHHHHHS
T ss_pred HHHH-HHHHHhcCCCcEEEEcCccccCCCcccC-ce-------eccccccc------CCCCCceEeHHHHHHHHHHHhcC
Confidence 9994 4556666799999999999999944322 10 11111111 23446899999999999999999
Q ss_pred cCcCCCCCCCCCCCCCceEEEEcCCCcccHH
Q 011841 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVG 386 (476)
Q Consensus 356 ~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~ 386 (476)
+...+ ++|++++.+...+.
T Consensus 203 ~~~~g------------~~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 203 PTAIR------------DRIVVRDADLEHHH 221 (224)
T ss_dssp CCCTT------------SEEEEEECC-----
T ss_pred ccccC------------CEEEEecCcchhcc
Confidence 87654 99999997765554
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.7e-29 Score=233.23 Aligned_cols=218 Identities=12% Similarity=0.172 Sum_probs=145.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+|+||++|+++|+++|++|++++|+.+ + ...+. .+++++.+|++|.++ +.+.++ |+||
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~-------~--~~~~~-~~~~~~~~D~~d~~~--~~~~~~--d~vi 66 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAG-------K--ITQTH-KDINILQKDIFDLTL--SDLSDQ--NVVV 66 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSH-------H--HHHHC-SSSEEEECCGGGCCH--HHHTTC--SEEE
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCch-------h--hhhcc-CCCeEEeccccChhh--hhhcCC--CEEE
Confidence 68999999999999999999999999999999542 1 11112 589999999999887 677766 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCC-CCCCCCCCCCCCCCChHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVPFSESHRTDQPASLYAATKKAG 277 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~-~~~~~E~~~~~~p~~~Y~~sK~~~ 277 (476)
|+||.... ....|+.++.+++++|++.+.+ +||++||.++|.... ..+..|+++. .|.+.|+.+|...
T Consensus 67 ~~ag~~~~---------~~~~~~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~~~~-~~~~~y~~~k~~~ 135 (221)
T 3ew7_A 67 DAYGISPD---------EAEKHVTSLDHLISVLNGTVSP-RLLVVGGAASLQIDEDGNTLLESKGL-REAPYYPTARAQA 135 (221)
T ss_dssp ECCCSSTT---------TTTSHHHHHHHHHHHHCSCCSS-EEEEECCCC--------------------CCCSCCHHHHH
T ss_pred ECCcCCcc---------ccchHHHHHHHHHHHHHhcCCc-eEEEEecceEEEcCCCCccccccCCC-CCHHHHHHHHHHH
Confidence 99998322 1345999999999999999875 999999987654433 3344555544 6778899999999
Q ss_pred HHHHHHHHH-HhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 278 EEIAHTYNH-IYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 278 E~~~~~~~~-~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
|.+ ..+.+ ..|+++++|||+.+|||+..... + ...+..+.+. +++ .++++++|+|++++.+++++
T Consensus 136 e~~-~~~~~~~~gi~~~ivrp~~v~g~~~~~~~----~---~~~~~~~~~~---~~~---~~~i~~~Dva~~~~~~l~~~ 201 (221)
T 3ew7_A 136 KQL-EHLKSHQAEFSWTYISPSAMFEPGERTGD----Y---QIGKDHLLFG---SDG---NSFISMEDYAIAVLDEIERP 201 (221)
T ss_dssp HHH-HHHHTTTTTSCEEEEECSSCCCCC----------------------------------CCCHHHHHHHHHHHHHSC
T ss_pred HHH-HHHHhhccCccEEEEeCcceecCCCccCc----e---Eeccccceec---CCC---CceEeHHHHHHHHHHHHhCc
Confidence 986 34443 67999999999999998432211 1 1123333333 222 36999999999999999998
Q ss_pred CcCCCCCCCCCCCCCceEEEEcCCCcccHHH
Q 011841 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGR 387 (476)
Q Consensus 357 ~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~e 387 (476)
...+ ++||++++.+.+.+|
T Consensus 202 ~~~g------------~~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 202 NHLN------------EHFTVAGKLEHHHHH 220 (221)
T ss_dssp SCTT------------SEEECCC--------
T ss_pred cccC------------CEEEECCCCcccccc
Confidence 7654 999999988776654
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=233.25 Aligned_cols=233 Identities=20% Similarity=0.207 Sum_probs=174.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.++|+||||||+|+||++++++|+++ |++|++++|..+ +. .. . ..+++++.+|++|.+++.++++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~-------~~-~~-~-~~~~~~~~~D~~d~~~~~~~~~~~- 70 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ-------GK-EK-I-GGEADVFIGDITDADSINPAFQGI- 70 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHH-------HH-HH-T-TCCTTEEECCTTSHHHHHHHHTTC-
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCC-------ch-hh-c-CCCeeEEEecCCCHHHHHHHHcCC-
Confidence 35689999999999999999999999 899999999421 11 11 1 347889999999999999999876
Q ss_pred ccEEEEccccCChh-------------hhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGVR-------------YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~-------------~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
|+||||||..... ...+.....+++|+.++.+++++|++.+.+ +||++||.+++.... +..
T Consensus 71 -d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~~~~~--~~~-- 144 (253)
T 1xq6_A 71 -DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVGSMGGTNPDH--PLN-- 144 (253)
T ss_dssp -SEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEEETTTTCTTC--GGG--
T ss_pred -CEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEcCccCCCCCC--ccc--
Confidence 9999999975321 011222356899999999999999999876 999999998753211 000
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
. ...+.|+.+|.++|.++++ .|+++++|||+.+||+....... ..+....++ + ...+++
T Consensus 145 --~-~~~~~y~~sK~~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~~~--------~~~~~~~~~---~---~~~~~~ 203 (253)
T 1xq6_A 145 --K-LGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKEGGVREL--------LVGKDDELL---Q---TDTKTV 203 (253)
T ss_dssp --G-GGGCCHHHHHHHHHHHHHT----SSSCEEEEEECEEECSCSSSSCE--------EEESTTGGG---G---SSCCEE
T ss_pred --c-ccchhHHHHHHHHHHHHHh----CCCceEEEecceeecCCcchhhh--------hccCCcCCc---C---CCCcEE
Confidence 0 1124588899999998865 69999999999999986432111 001000111 1 124699
Q ss_pred eHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC---cccHHHHHHHHHHHhCC
Q 011841 341 YIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS---PVPVGRLVSILENLLNT 398 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~---~vt~~el~~~l~~~~g~ 398 (476)
+++|+|++++.+++++...+ ++||+++++ ++|+.|+++.+.+.+|+
T Consensus 204 ~~~Dva~~~~~~~~~~~~~g------------~~~~i~~~~~~~~~s~~e~~~~~~~~~g~ 252 (253)
T 1xq6_A 204 PRADVAEVCIQALLFEEAKN------------KAFDLGSKPEGTSTPTKDFKALFSQVTSR 252 (253)
T ss_dssp EHHHHHHHHHHHTTCGGGTT------------EEEEEEECCTTTSCCCCCHHHHHHTCCCC
T ss_pred cHHHHHHHHHHHHcCccccC------------CEEEecCCCcCCCCCHHHHHHHHHHHhCC
Confidence 99999999999998765432 899999964 59999999999999886
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-28 Score=240.56 Aligned_cols=241 Identities=15% Similarity=0.176 Sum_probs=179.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+|+||||||||+||++++++|+++|++|++++|..+...+...... ..+...+++++.+|+.|++++.++++++ |+|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~d~~~l~~~~~~~--d~v 80 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQML-LYFKQLGAKLIEASLDDHQRLVDALKQV--DVV 80 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHH-HHHHTTTCEEECCCSSCHHHHHHHHTTC--SEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHH-HHHHhCCeEEEeCCCCCHHHHHHHHhCC--CEE
Confidence 5789999999999999999999999999999997654322111111 1123458999999999999999999986 999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
||+++..... .|+.++.+++++|++.+ ++ +||+ | +||.....+ +++..+....| .+|.+
T Consensus 81 i~~a~~~~~~-----------~~~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~~~~---~~~~~p~~~~y-~sK~~ 140 (313)
T 1qyd_A 81 ISALAGGVLS-----------HHILEQLKLVEAIKEAGNIK-RFLP-S---EFGMDPDIM---EHALQPGSITF-IDKRK 140 (313)
T ss_dssp EECCCCSSSS-----------TTTTTHHHHHHHHHHSCCCS-EEEC-S---CCSSCTTSC---CCCCSSTTHHH-HHHHH
T ss_pred EECCccccch-----------hhHHHHHHHHHHHHhcCCCc-eEEe-c---CCcCCcccc---ccCCCCCcchH-HHHHH
Confidence 9999974321 26778899999999998 76 9985 3 455332211 12221224578 99999
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHH----HHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHH
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTK----DILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~ 352 (476)
+|.++++ .|+++++|||+.++|+.... +.. ....++.+.++ ++++..++|+|++|+|++++.+
T Consensus 141 ~e~~~~~----~g~~~~ilrp~~~~~~~~~~------~~~~~~~~~~~~~~~~~~---~~g~~~~~~i~~~Dva~~~~~~ 207 (313)
T 1qyd_A 141 VRRAIEA----ASIPYTYVSSNMFAGYFAGS------LAQLDGHMMPPRDKVLIY---GDGNVKGIWVDEDDVGTYTIKS 207 (313)
T ss_dssp HHHHHHH----TTCCBCEEECCEEHHHHTTT------SSCTTCCSSCCSSEECCB---TTSCSEEEEECHHHHHHHHHHH
T ss_pred HHHHHHh----cCCCeEEEEeceeccccccc------cccccccccCCCCeEEEe---CCCCceEEEEEHHHHHHHHHHH
Confidence 9998865 58999999999998853211 111 01234444444 6678899999999999999999
Q ss_pred HhhcCcCCCCCCCCCCCCCceEEEEcCC-CcccHHHHHHHHHHHhCCCccceeec
Q 011841 353 LDTAGKSTGSGGKKRGPAQLRVYNLGNT-SPVPVGRLVSILENLLNTKAKKHVIR 406 (476)
Q Consensus 353 l~~~~~~~g~~~~~~~~~~~~i~ni~~~-~~vt~~el~~~l~~~~g~~~~~~~~~ 406 (476)
+.++...+ ++|++.++ +.+|+.|+++.+++.+|++..+...+
T Consensus 208 l~~~~~~~------------~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 250 (313)
T 1qyd_A 208 IDDPQTLN------------KTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 250 (313)
T ss_dssp TTCGGGSS------------SEEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred HhCcccCC------------ceEEEeCCCCccCHHHHHHHHHHhcCCCCceEECC
Confidence 98875433 77888764 78999999999999999876655444
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=229.04 Aligned_cols=206 Identities=12% Similarity=0.046 Sum_probs=165.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
++|+||||||+|+||++++++|+++|+ +|++++|.... ...+++++.+|++|.+++.+++ +
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-------------~~~~~~~~~~D~~~~~~~~~~~----~ 66 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------------EHPRLDNPVGPLAELLPQLDGS----I 66 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------------CCTTEECCBSCHHHHGGGCCSC----C
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-------------cCCCceEEeccccCHHHHHHhh----h
Confidence 458999999999999999999999998 99999997653 1347889999999998888877 5
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (476)
|+|||+||.... ...+++..+++|+.++.+++++|++.+.+ +||++||.++|+ .+.+.|+.+|
T Consensus 67 d~vi~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~--------------~~~~~y~~sK 129 (215)
T 2a35_A 67 DTAFCCLGTTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGADA--------------KSSIFYNRVK 129 (215)
T ss_dssp SEEEECCCCCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHHH
T ss_pred cEEEECeeeccc--cCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECCcccCC--------------CCccHHHHHH
Confidence 999999997432 35678889999999999999999999886 999999999884 2457899999
Q ss_pred HHHHHHHHHHHHHhCCc-EEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHH
Q 011841 275 KAGEEIAHTYNHIYGLA-LTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353 (476)
Q Consensus 275 ~~~E~~~~~~~~~~gi~-~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l 353 (476)
.++|.++++ .|++ +++|||+.+|||+.... + ...+. +....+. + ..++++|++|+|++++.++
T Consensus 130 ~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~-~----~~~~~-~~~~~~~----~--~~~~~i~~~Dva~~~~~~~ 193 (215)
T 2a35_A 130 GELEQALQE----QGWPQLTIARPSLLFGPREEFR-L----AEILA-APIARIL----P--GKYHGIEACDLARALWRLA 193 (215)
T ss_dssp HHHHHHHTT----SCCSEEEEEECCSEESTTSCEE-G----GGGTT-CCCC----------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----cCCCeEEEEeCceeeCCCCcch-H----HHHHH-Hhhhhcc----C--CCcCcEeHHHHHHHHHHHH
Confidence 999999876 4899 99999999999965421 1 11222 2222222 1 2578999999999999999
Q ss_pred hhcCcCCCCCCCCCCCCCceEEEEcCCCcccHH
Q 011841 354 DTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVG 386 (476)
Q Consensus 354 ~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~ 386 (476)
+++. . ++||+++++.+++.
T Consensus 194 ~~~~--~------------~~~~i~~~~~~~~~ 212 (215)
T 2a35_A 194 LEEG--K------------GVRFVESDELRKLG 212 (215)
T ss_dssp TCCC--S------------EEEEEEHHHHHHHH
T ss_pred hcCC--C------------CceEEcHHHHHHhh
Confidence 8865 2 89999987665543
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=238.93 Aligned_cols=235 Identities=18% Similarity=0.171 Sum_probs=176.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEee-cCCHHHHHHhhccCCccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD-LNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~D-l~d~~~l~~~~~~~~~d~ 196 (476)
+|+||||||||+||++|+++|+++|++|++++|+.+.. . ........+++++.+| ++|++++.++++++ |+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~----~--~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~--d~ 76 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL----I--AEELQAIPNVTLFQGPLLNNVPLMDTLFEGA--HL 76 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH----H--HHHHHTSTTEEEEESCCTTCHHHHHHHHTTC--SE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChh----h--HHHHhhcCCcEEEECCccCCHHHHHHHHhcC--CE
Confidence 57899999999999999999999999999999965421 0 0111223479999999 99999999999987 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCcc--ccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS--VYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~--vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
|||+++... . +.|..+ .+++++|++.+ ++ +|||+||.+ .|+. .+...|+.+
T Consensus 77 Vi~~a~~~~-----~------~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~~~~~~~~-------------~~~~~y~~s 130 (352)
T 1xgk_A 77 AFINTTSQA-----G------DEIAIG-KDLADAAKRAGTIQ-HYIYSSMPDHSLYGP-------------WPAVPMWAP 130 (352)
T ss_dssp EEECCCSTT-----S------CHHHHH-HHHHHHHHHHSCCS-EEEEEECCCGGGTSS-------------CCCCTTTHH
T ss_pred EEEcCCCCC-----c------HHHHHH-HHHHHHHHHcCCcc-EEEEeCCccccccCC-------------CCCccHHHH
Confidence 999997531 1 236666 99999999998 76 999999986 3421 233679999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHH-HHcCCceEEEeeCCCCceeEeceeH-HHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKD-ILQGKTIDVYKTQDDREVARDFTYI-DDVVKGCVG 351 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~v~v-~Dva~a~~~ 351 (476)
|.++|.++++ .|+++++|||+ +||++..... ...+... ...+... + ..++++++.++++|+ +|+|++++.
T Consensus 131 K~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~~-~~~~~~~~~~~g~~~-~-~~~~~~~~~~~~i~v~~Dva~ai~~ 202 (352)
T 1xgk_A 131 KFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSLP-YPLFQMELMPDGTFE-W-HAPFDPDIPLPWLDAEHDVGPALLQ 202 (352)
T ss_dssp HHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSSS-CSSCBEEECTTSCEE-E-EESSCTTSCEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCEEEEecc-eecCCchhcc-cccccccccCCCceE-E-eeccCCCCceeeEecHHHHHHHHHH
Confidence 9999999887 48999999987 6887543211 0000001 1223322 1 112557888999999 899999999
Q ss_pred HHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeec
Q 011841 352 ALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 406 (476)
Q Consensus 352 ~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~ 406 (476)
+++++.. ..| ++||+++ +.+|+.|+++.+.+.+|++......|
T Consensus 203 ~l~~~~~~~~g-----------~~~~l~~-~~~s~~e~~~~i~~~~G~~~~~~~vp 246 (352)
T 1xgk_A 203 IFKDGPQKWNG-----------HRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVP 246 (352)
T ss_dssp HHHHCHHHHTT-----------CEEEECS-EEECHHHHHHHHHHHHTSCEEEEECS
T ss_pred HHhCCchhhCC-----------eEEEEec-CCCCHHHHHHHHHHHHCCCCceEECC
Confidence 9987531 122 8999996 67999999999999999987665555
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-27 Score=234.06 Aligned_cols=230 Identities=20% Similarity=0.198 Sum_probs=176.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
++||||||||+||++|+++|+++|++|++++|+.+...... ..+...+++++.+|+.|++++.++++++ |+||
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~-----~~l~~~~v~~v~~Dl~d~~~l~~a~~~~--d~vi 84 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLL-----DEFQSLGAIIVKGELDEHEKLVELMKKV--DVVI 84 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHH-----HHHHHTTCEEEECCTTCHHHHHHHHTTC--SEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHH-----HHhhcCCCEEEEecCCCHHHHHHHHcCC--CEEE
Confidence 58999999999999999999999999999999764111111 1112348999999999999999999987 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCCCC-CChHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAATKKA 276 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p-~~~Y~~sK~~ 276 (476)
|+++... +.++.+++++|++.+ ++ +||+ | +||... +|.++. .| ...| .+|.+
T Consensus 85 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~sK~~ 138 (318)
T 2r6j_A 85 SALAFPQ---------------ILDQFKILEAIKVAGNIK-RFLP-S---DFGVEE----DRINAL-PPFEALI-ERKRM 138 (318)
T ss_dssp ECCCGGG---------------STTHHHHHHHHHHHCCCC-EEEC-S---CCSSCT----TTCCCC-HHHHHHH-HHHHH
T ss_pred ECCchhh---------------hHHHHHHHHHHHhcCCCC-EEEe-e---ccccCc----ccccCC-CCcchhH-HHHHH
Confidence 9998621 456789999999998 76 8884 3 355321 222222 22 3568 99999
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
+|.++++ .|+++++|||+.+++. +...+......++.+.++ ++++..++|+|++|+|++++.++.++
T Consensus 139 ~e~~~~~----~~~~~~~lr~~~~~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~~~l~~~ 205 (318)
T 2r6j_A 139 IRRAIEE----ANIPYTYVSANCFASY------FINYLLRPYDPKDEITVY---GTGEAKFAMNYEQDIGLYTIKVATDP 205 (318)
T ss_dssp HHHHHHH----TTCCBEEEECCEEHHH------HHHHHHCTTCCCSEEEEE---TTSCCEEEEECHHHHHHHHHHHTTCG
T ss_pred HHHHHHh----cCCCeEEEEcceehhh------hhhhhccccCCCCceEEe---cCCCceeeEeeHHHHHHHHHHHhcCc
Confidence 9988875 5899999999988764 223333333355666666 67788999999999999999999876
Q ss_pred CcCCCCCCCCCCCCCceEEEEcC-CCcccHHHHHHHHHHHhCCCccceeec
Q 011841 357 GKSTGSGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNTKAKKHVIR 406 (476)
Q Consensus 357 ~~~~g~~~~~~~~~~~~i~ni~~-~~~vt~~el~~~l~~~~g~~~~~~~~~ 406 (476)
...+ ++|++.+ ++.+|+.|+++.+++.+|++..+...+
T Consensus 206 ~~~~------------~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (318)
T 2r6j_A 206 RALN------------RVVIYRPSTNIITQLELISRWEKKIGKKFKKIHVP 244 (318)
T ss_dssp GGTT------------EEEECCCGGGEEEHHHHHHHHHHHHTCCCEEEEEC
T ss_pred cccC------------eEEEecCCCCccCHHHHHHHHHHHhCCCCceeecC
Confidence 5433 7888875 478999999999999999987666554
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=235.61 Aligned_cols=238 Identities=17% Similarity=0.213 Sum_probs=177.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC-CchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY-DPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
+|+|+||||||+||++|++.|+++|++|++++|..... .+..... ...+...+++++.+|++|++++.++++++ |+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~-~~~l~~~~v~~v~~D~~d~~~l~~~~~~~--d~ 80 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQL-LESFKASGANIVHGSIDDHASLVEAVKNV--DV 80 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHH-HHHHHTTTCEEECCCTTCHHHHHHHHHTC--SE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHH-HHHHHhCCCEEEEeccCCHHHHHHHHcCC--CE
Confidence 57899999999999999999999999999999976533 1111111 11223468999999999999999999987 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCCCC-CChHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAATK 274 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p-~~~Y~~sK 274 (476)
|||+++... +.++.+++++|++++ ++ +||+ | +||... .|.++. .| ...| .+|
T Consensus 81 vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~sK 134 (308)
T 1qyc_A 81 VISTVGSLQ---------------IESQVNIIKAIKEVGTVK-RFFP-S---EFGNDV----DNVHAV-EPAKSVF-EVK 134 (308)
T ss_dssp EEECCCGGG---------------SGGGHHHHHHHHHHCCCS-EEEC-S---CCSSCT----TSCCCC-TTHHHHH-HHH
T ss_pred EEECCcchh---------------hhhHHHHHHHHHhcCCCc-eEee-c---ccccCc----cccccC-CcchhHH-HHH
Confidence 999998621 445789999999998 76 8884 4 344321 222222 23 4578 999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHh
Q 011841 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354 (476)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~ 354 (476)
.++|.++++ .|++++++||+.++|+....... .......++.+.++ ++++..++|+|++|+|++++.++.
T Consensus 135 ~~~e~~~~~----~~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~~~l~ 204 (308)
T 1qyc_A 135 AKVRRAIEA----EGIPYTYVSSNCFAGYFLRSLAQ---AGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTIKAVD 204 (308)
T ss_dssp HHHHHHHHH----HTCCBEEEECCEEHHHHTTTTTC---TTCSSCCSSEEEEE---TTSCCEEEEECHHHHHHHHHTTSS
T ss_pred HHHHHHHHh----cCCCeEEEEeceecccccccccc---ccccCCCCCceEEe---cCCCceEEEecHHHHHHHHHHHHh
Confidence 999988875 58999999999998853221000 00011245566666 678889999999999999999998
Q ss_pred hcCcCCCCCCCCCCCCCceEEEEcCC-CcccHHHHHHHHHHHhCCCccceeec
Q 011841 355 TAGKSTGSGGKKRGPAQLRVYNLGNT-SPVPVGRLVSILENLLNTKAKKHVIR 406 (476)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~i~ni~~~-~~vt~~el~~~l~~~~g~~~~~~~~~ 406 (476)
++...+ ++|++.++ +.+|+.|+++.+++.+|++..+...+
T Consensus 205 ~~~~~~------------~~~~~~g~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 245 (308)
T 1qyc_A 205 DPRTLN------------KTLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 245 (308)
T ss_dssp CGGGTT------------EEEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred CccccC------------eEEEEeCCCCccCHHHHHHHHHHHhCCCCceEeCC
Confidence 765433 88888764 78999999999999999887665544
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-27 Score=230.44 Aligned_cols=235 Identities=18% Similarity=0.241 Sum_probs=175.8
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC-CCCc-hHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS-YYDP-SLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~-~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
+|+|+||||||+||++|+++|+++|++|++++|... ...+ ...... ..+...+++++.+|++|.+++.++++++ |
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~~~~v~~v~~D~~d~~~l~~~~~~~--d 78 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI-DNYQSLGVILLEGDINDHETLVKAIKQV--D 78 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHHHTTCEEEECCTTCHHHHHHHHTTC--S
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHHhCCCEEEEeCCCCHHHHHHHHhCC--C
Confidence 478999999999999999999999999999999752 1111 111111 1122358999999999999999999977 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCCCC-CChHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAAT 273 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p-~~~Y~~s 273 (476)
+|||+|+... +.++.+++++|++++ ++ +||+ | +||... +|..+. .| ...| .+
T Consensus 79 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~s 132 (307)
T 2gas_A 79 IVICAAGRLL---------------IEDQVKIIKAIKEAGNVK-KFFP-S---EFGLDV----DRHDAV-EPVRQVF-EE 132 (307)
T ss_dssp EEEECSSSSC---------------GGGHHHHHHHHHHHCCCS-EEEC-S---CCSSCT----TSCCCC-TTHHHHH-HH
T ss_pred EEEECCcccc---------------cccHHHHHHHHHhcCCce-EEee-c---ccccCc----ccccCC-CcchhHH-HH
Confidence 9999998632 445789999999998 76 8883 3 455321 222222 23 4578 99
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHH---HHHcCCceEEEeeCCCCceeEeceeHHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTK---DILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~ 350 (476)
|..+|.++++ .|+++++|||+.++++.... +.. ....++.+.++ ++++..++|++++|+|++++
T Consensus 133 K~~~e~~~~~----~~i~~~~lrp~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~ 199 (307)
T 2gas_A 133 KASIRRVIEA----EGVPYTYLCCHAFTGYFLRN------LAQLDATDPPRDKVVIL---GDGNVKGAYVTEADVGTFTI 199 (307)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEETTTTGGG------TTCTTCSSCCSSEEEEE---TTSCSEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEcceeecccccc------ccccccccCCCCeEEEe---cCCCcceEEeeHHHHHHHHH
Confidence 9999988865 58999999999998863211 111 11234456666 66788999999999999999
Q ss_pred HHHhhcCcCCCCCCCCCCCCCceEEEEcCC-CcccHHHHHHHHHHHhCCCccceeec
Q 011841 351 GALDTAGKSTGSGGKKRGPAQLRVYNLGNT-SPVPVGRLVSILENLLNTKAKKHVIR 406 (476)
Q Consensus 351 ~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~-~~vt~~el~~~l~~~~g~~~~~~~~~ 406 (476)
.++.++...+ ++|++.++ +.+|+.|+++.+++.+|++..+...+
T Consensus 200 ~~l~~~~~~~------------~~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~~~ 244 (307)
T 2gas_A 200 RAANDPNTLN------------KAVHIRLPKNYLTQNEVIALWEKKIGKTLEKTYVS 244 (307)
T ss_dssp HHHTCGGGTT------------EEEECCCGGGEEEHHHHHHHHHHHHTSCCEEEEEC
T ss_pred HHHcCccccC------------ceEEEeCCCCcCCHHHHHHHHHHHhCCCCceeecC
Confidence 9998765433 78888764 68999999999999999887665554
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=233.52 Aligned_cols=236 Identities=14% Similarity=0.150 Sum_probs=177.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC-CCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN-SYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~-~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
++|+|+||||||+||++|+++|+++|++|++++|.. +........... .+...+++++.+|+.|.+++.++++++ |
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~-~~~~~~v~~v~~D~~d~~~l~~a~~~~--d 79 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLRE-EFRSMGVTIIEGEMEEHEKMVSVLKQV--D 79 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHH-HHHHTTCEEEECCTTCHHHHHHHHTTC--S
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHH-HhhcCCcEEEEecCCCHHHHHHHHcCC--C
Confidence 357899999999999999999999999999999975 322111111111 122358999999999999999999987 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCCCC-CChHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAAT 273 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p-~~~Y~~s 273 (476)
+|||+++... +.++.+++++|++.+ ++ +||+ | +||... +|..+. .| ...| .+
T Consensus 80 ~vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~----~~~~~~-~p~~~~y-~s 133 (321)
T 3c1o_A 80 IVISALPFPM---------------ISSQIHIINAIKAAGNIK-RFLP-S---DFGCEE----DRIKPL-PPFESVL-EK 133 (321)
T ss_dssp EEEECCCGGG---------------SGGGHHHHHHHHHHCCCC-EEEC-S---CCSSCG----GGCCCC-HHHHHHH-HH
T ss_pred EEEECCCccc---------------hhhHHHHHHHHHHhCCcc-EEec-c---ccccCc----cccccC-CCcchHH-HH
Confidence 9999998621 456789999999998 76 8883 3 455321 222222 22 4579 99
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHH---HHHcCCceEEEeeCCCCceeEeceeHHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTK---DILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~ 350 (476)
|.++|.++++ .|+++++|||+.++++ +...+.. ....++.+.++ ++++..++|++++|+|++++
T Consensus 134 K~~~e~~~~~----~~~~~~~lrp~~~~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~Dva~~~~ 200 (321)
T 3c1o_A 134 KRIIRRAIEA----AALPYTYVSANCFGAY------FVNYLLHPSPHPNRNDDIVIY---GTGETKFVLNYEEDIAKYTI 200 (321)
T ss_dssp HHHHHHHHHH----HTCCBEEEECCEEHHH------HHHHHHCCCSSCCTTSCEEEE---TTSCCEEEEECHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCeEEEEeceeccc------cccccccccccccccCceEEe---cCCCcceeEeeHHHHHHHHH
Confidence 9999998864 5899999999998875 1222221 11245566666 66788999999999999999
Q ss_pred HHHhhcCcCCCCCCCCCCCCCceEEEEcC-CCcccHHHHHHHHHHHhCCCccceeec
Q 011841 351 GALDTAGKSTGSGGKKRGPAQLRVYNLGN-TSPVPVGRLVSILENLLNTKAKKHVIR 406 (476)
Q Consensus 351 ~~l~~~~~~~g~~~~~~~~~~~~i~ni~~-~~~vt~~el~~~l~~~~g~~~~~~~~~ 406 (476)
.++.++...+ ++|++.+ ++.+|+.|+++.+.+.+|++..+...+
T Consensus 201 ~~l~~~~~~g------------~~~~~~g~~~~~t~~e~~~~~~~~~g~~~~~~~~~ 245 (321)
T 3c1o_A 201 KVACDPRCCN------------RIVIYRPPKNIISQNELISLWEAKSGLSFKKVHMP 245 (321)
T ss_dssp HHHHCGGGTT------------EEEECCCGGGEEEHHHHHHHHHHHHTSCCCEEEEC
T ss_pred HHHhCccccC------------eEEEEeCCCCcccHHHHHHHHHHHcCCcceeeeCC
Confidence 9998875443 8888876 478999999999999999987766555
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-26 Score=222.51 Aligned_cols=244 Identities=14% Similarity=0.139 Sum_probs=181.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|..+ .............++.++.+|++|+++++++++.+
T Consensus 14 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 89 (278)
T 2bgk_A 14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD----HGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAK 89 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChh----HHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998432 11112222222237999999999999999988743
Q ss_pred --CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ....++.+..+++|+.++.++++++.. .+. ++||++||...|....
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~~------- 161 (278)
T 2bgk_A 90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKK-GSIVFTASISSFTAGE------- 161 (278)
T ss_dssp HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTC-EEEEEECCGGGTCCCT-------
T ss_pred cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-CeEEEEeeccccCCCC-------
Confidence 57999999997532 223355677899999999999998765 344 3999999999875431
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCc-HHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMA-YFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.|.+++.++.+ +|+++++||||.|+|+....... ...+...+....+ ...
T Consensus 162 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~----------~~~ 227 (278)
T 2bgk_A 162 ----GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAA----------NLK 227 (278)
T ss_dssp ----TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTC----------SSC
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhcccchhHHHHhhhccc----------ccc
Confidence 24568999999999999998876 58999999999999986442211 1222222222211 112
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHh
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL 396 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~ 396 (476)
..+++++|+|++++.++..+.. .+| ++|++.++..+++.|+++.+.+++
T Consensus 228 ~~~~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gg~~~~~~e~~~~i~~~~ 277 (278)
T 2bgk_A 228 GTLLRAEDVADAVAYLAGDESKYVSG-----------LNLVIDGGYTRTNPAFPTALKHGL 277 (278)
T ss_dssp SCCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGCCTHHHHHSCSCC
T ss_pred cccCCHHHHHHHHHHHcCcccccCCC-----------CEEEECCcccccCCccchhhhhhc
Confidence 3589999999999999976432 233 899999999999999999886543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-27 Score=230.37 Aligned_cols=245 Identities=16% Similarity=0.053 Sum_probs=177.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+.. ....... ..+++++.+|++|.++++++++.+
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEAL----DDLVAAY--PDRAEAISLDVTDGERIDVVAADVLAR 76 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGG----HHHHHHC--TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHhc--cCCceEEEeeCCCHHHHHHHHHHHHHh
Confidence 3568999999999999999999999999999999965432 2222211 347999999999999999988754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHH----HHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGF----VNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt----~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.|+ ..+++.+++.+.. +||++||...+...
T Consensus 77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~---------- 145 (281)
T 3m1a_A 77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSG-SVVNISSFGGQLSF---------- 145 (281)
T ss_dssp HSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTCCC----------
T ss_pred CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEcCccccCCC----------
Confidence 67999999997432 334456678999999994 4455555666654 99999998865322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCC-----CcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD-----MAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
.+...|+.+|.+.|.+++.++.+ +|+++++||||.|+++..... .....+.........+.. ..
T Consensus 146 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 217 (281)
T 3m1a_A 146 --AGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAAYFSEENPAYAEKVGPTRQLVQ------GS 217 (281)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCEEECCBCTTTHHHHHHHHHHHH------C-
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCccccccccccccccCCcchhhHHHhHHHHHHHh------hc
Confidence 56788999999999999999887 689999999999988753211 001111111111111100 12
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~ 398 (476)
....+.+++|+|++++.+++.+... ..|+++++....+.+....+.+.++.
T Consensus 218 ~~~~~~~~~dva~a~~~~~~~~~~~-------------~~~~l~s~~~~~i~g~~~~i~~~~~~ 268 (281)
T 3m1a_A 218 DGSQPGDPAKAAAAIRLALDTEKTP-------------LRLALGGDAVDFLTGHLDSVRAELTE 268 (281)
T ss_dssp ----CBCHHHHHHHHHHHHHSSSCC-------------SEEEESHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCCC-------------eEEecCchHHHHHHHHHHHHHHHHHH
Confidence 2345788999999999999886543 78999998888888888888777654
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=211.60 Aligned_cols=202 Identities=15% Similarity=0.059 Sum_probs=156.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|+||||+|+||++++++|+++|++|++++|+.+.... ....+++++.+|++|++++.++++++ |+||
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~--d~vi 72 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS---------EGPRPAHVVVGDVLQAADVDKTVAGQ--DAVI 72 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCS---------SSCCCSEEEESCTTSHHHHHHHHTTC--SEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccc---------ccCCceEEEEecCCCHHHHHHHHcCC--CEEE
Confidence 799999999999999999999999999999996543221 11357999999999999999999976 9999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+||.... .++ .++|+.++.+++++|++.+++ +||++||.++|+.....+ .+...|+.+|.++|
T Consensus 73 ~~a~~~~~----~~~---~~~n~~~~~~~~~~~~~~~~~-~~v~~Ss~~~~~~~~~~~--------~~~~~y~~~K~~~e 136 (206)
T 1hdo_A 73 VLLGTRND----LSP---TTVMSEGARNIVAAMKAHGVD-KVVACTSAFLLWDPTKVP--------PRLQAVTDDHIRMH 136 (206)
T ss_dssp ECCCCTTC----CSC---CCHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCTTCSC--------GGGHHHHHHHHHHH
T ss_pred ECccCCCC----CCc---cchHHHHHHHHHHHHHHhCCC-eEEEEeeeeeccCccccc--------ccchhHHHHHHHHH
Confidence 99997432 111 247999999999999999886 999999999987543211 15678999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
.++++ .++++++|||+.+ +++.....+ ..... +... .++++++|+|++++.+++++..
T Consensus 137 ~~~~~----~~i~~~~lrp~~~-~~~~~~~~~-------------~~~~~--~~~~--~~~i~~~Dva~~~~~~~~~~~~ 194 (206)
T 1hdo_A 137 KVLRE----SGLKYVAVMPPHI-GDQPLTGAY-------------TVTLD--GRGP--SRVISKHDLGHFMLRCLTTDEY 194 (206)
T ss_dssp HHHHH----TCSEEEEECCSEE-ECCCCCSCC-------------EEESS--SCSS--CSEEEHHHHHHHHHHTTSCSTT
T ss_pred HHHHh----CCCCEEEEeCCcc-cCCCCCcce-------------Eeccc--CCCC--CCccCHHHHHHHHHHHhcCccc
Confidence 98854 6999999999997 432211110 11110 1111 4899999999999999988654
Q ss_pred CCCCCCCCCCCCCceEEEEcCCC
Q 011841 359 STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 359 ~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+ ++||++++.
T Consensus 195 ~g------------~~~~i~~g~ 205 (206)
T 1hdo_A 195 DG------------HSTYPSHQY 205 (206)
T ss_dssp TT------------CEEEEECCC
T ss_pred cc------------cceeeeccc
Confidence 32 899999874
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-26 Score=217.62 Aligned_cols=200 Identities=12% Similarity=0.048 Sum_probs=157.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
++|+||||||+|+||++++++|+++|+ +|++++|+.+...... ..+++++.+|++|++++.++++++
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~-- 85 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA---------YKNVNQEVVDFEKLDDYASAFQGH-- 85 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG---------GGGCEEEECCGGGGGGGGGGGSSC--
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc---------cCCceEEecCcCCHHHHHHHhcCC--
Confidence 468999999999999999999999999 9999999776543211 136889999999999999999865
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (476)
|+||||||..... .+++..+++|+.++.+++++|++.+.+ +||++||.++|+. +...|+.+|
T Consensus 86 d~vi~~ag~~~~~---~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~SS~~~~~~--------------~~~~Y~~sK 147 (242)
T 2bka_A 86 DVGFCCLGTTRGK---AGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSSKGADKS--------------SNFLYLQVK 147 (242)
T ss_dssp SEEEECCCCCHHH---HHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCTT--------------CSSHHHHHH
T ss_pred CEEEECCCccccc---CCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEccCcCCCC--------------CcchHHHHH
Confidence 9999999974322 235678999999999999999998875 9999999998752 346899999
Q ss_pred HHHHHHHHHHHHHhCC-cEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHH
Q 011841 275 KAGEEIAHTYNHIYGL-ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353 (476)
Q Consensus 275 ~~~E~~~~~~~~~~gi-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l 353 (476)
.++|.+++. .++ ++++||||.||||+.... ....+...+....+. .+ ....+++++|+|++++.++
T Consensus 148 ~~~e~~~~~----~~~~~~~~vrpg~v~~~~~~~~-~~~~~~~~~~~~~~~-~~-------~~~~~~~~~dva~~~~~~~ 214 (242)
T 2bka_A 148 GEVEAKVEE----LKFDRYSVFRPGVLLCDRQESR-PGEWLVRKFFGSLPD-SW-------ASGHSVPVVTVVRAMLNNV 214 (242)
T ss_dssp HHHHHHHHT----TCCSEEEEEECCEEECTTGGGS-HHHHHHHHHHCSCCT-TG-------GGGTEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHh----cCCCCeEEEcCceecCCCCCCc-HHHHHHHHhhcccCc-cc-------cCCcccCHHHHHHHHHHHH
Confidence 999998876 478 599999999999964321 223333444333221 01 1134899999999999999
Q ss_pred hhcCc
Q 011841 354 DTAGK 358 (476)
Q Consensus 354 ~~~~~ 358 (476)
.++..
T Consensus 215 ~~~~~ 219 (242)
T 2bka_A 215 VRPRD 219 (242)
T ss_dssp TSCCC
T ss_pred hCccc
Confidence 87654
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-26 Score=225.48 Aligned_cols=250 Identities=16% Similarity=0.104 Sum_probs=184.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..++..............+.++.+|++|+++++++++.+
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 88 (281)
T 3svt_A 9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW 88 (281)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999543222211111111011126889999999999999888754
Q ss_pred --CccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||... .+.+.++.+..+++|+.++.++++++.. .+. .+||++||...+...
T Consensus 89 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 158 (281)
T 3svt_A 89 HGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGG-GSFVGISSIAASNTH--------- 158 (281)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCHHHHSCC---------
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEeCHHHcCCC---------
Confidence 6899999999722 1334456678999999999999998653 332 389999998876432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..........+...+....++ ..
T Consensus 159 ---~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~------------~r 223 (281)
T 3svt_A 159 ---RWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPL------------PR 223 (281)
T ss_dssp ---TTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCSS------------SS
T ss_pred ---CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCCC------------CC
Confidence 456789999999999999998775 599999999999987432100001222333333222 24
Q ss_pred ceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc-HHHHHHHHHHHhCCCcc
Q 011841 339 FTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP-VGRLVSILENLLNTKAK 401 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt-~~el~~~l~~~~g~~~~ 401 (476)
+.+++|+|++++.++..... .+| ++|++.++..++ ..++++.+.+.+|.+..
T Consensus 224 ~~~~~dva~~~~~l~s~~~~~itG-----------~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~ 277 (281)
T 3svt_A 224 QGEVEDVANMAMFLLSDAASFVTG-----------QVINVDGGQMLRRGPDFSAMLEPVFGRDAL 277 (281)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGSCCCCCHHHHHHHHCTTGG
T ss_pred CCCHHHHHHHHHHHhCcccCCCCC-----------CEEEeCCChhcccCCcchhccccccCCccc
Confidence 67899999999999876533 233 999999998877 88899999999997653
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-26 Score=221.70 Aligned_cols=240 Identities=14% Similarity=0.112 Sum_probs=164.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh----hcCCceEEEEeecCCHHHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL----LQKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~----~~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ........ ....++.++.+|++|+++++++++.
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAER----LEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILST 79 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHH
Confidence 467899999999999999999999999999999995432 11111111 1134689999999999999988874
Q ss_pred C-----CccEEEEccccCChh----h----hhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccc-cCCCC
Q 011841 192 V-----PFTHVLHLAAQAGVR----Y----AMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSV-YGLNT 253 (476)
Q Consensus 192 ~-----~~d~Vi~~Ag~~~~~----~----~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~v-yg~~~ 253 (476)
+ ++|+||||||..... . +.++.+..+++|+.++.++++++... + ++||++||... +...
T Consensus 80 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~~~- 156 (278)
T 1spx_A 80 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLHAT- 156 (278)
T ss_dssp HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTTSSSSCC-
T ss_pred HHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEecccccccCC-
Confidence 3 579999999974321 2 44556788999999999999987653 4 49999999876 5321
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC----cH---HHHHHHHHcCCc
Q 011841 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM----AY---FFFTKDILQGKT 323 (476)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~----~~---~~~~~~~~~g~~ 323 (476)
++...|+.+|.+.+.+++.++.+ +|+++++||||.|+++...... .. ......+....+
T Consensus 157 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p 225 (278)
T 1spx_A 157 -----------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVP 225 (278)
T ss_dssp -----------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCT
T ss_pred -----------CCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHhcCC
Confidence 34568999999999999998866 4899999999999998532210 00 000122221111
Q ss_pred eEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc--CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHh
Q 011841 324 IDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK--STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL 396 (476)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~--~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~ 396 (476)
...+++++|+|++++.++..+.. .+| ++|++.++..+++.++++++.+++
T Consensus 226 ------------~~~~~~~~dvA~~v~~l~s~~~~~~~tG-----------~~~~vdgG~~~~~~~~~~~~~~~~ 277 (278)
T 1spx_A 226 ------------AGVMGQPQDIAEVIAFLADRKTSSYIIG-----------HQLVVDGGSSLIMGLHCQDFAKLL 277 (278)
T ss_dssp ------------TSSCBCHHHHHHHHHHHHCHHHHTTCCS-----------CEEEESTTGGGC------------
T ss_pred ------------CcCCCCHHHHHHHHHHHcCccccCcccC-----------cEEEECCCcccccCcccccHHHHh
Confidence 12478999999999999876542 233 899999999999999999998764
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=219.24 Aligned_cols=229 Identities=15% Similarity=0.175 Sum_probs=172.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+|+||||||+|+||++++++|+++|++|++++|+.+. ......... ...++.++.+|++|+++++++++.+
T Consensus 9 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 84 (255)
T 1fmc_A 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA----ANHVVDEIQQLGGQAFACRCDITSEQELSALADFAIS 84 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHH----HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHH----HHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999995431 111111111 1347889999999999999888732
Q ss_pred ---CccEEEEccccCCh---hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~---~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++++..+++|+.++.++++++. +.+.. +||++||...+...
T Consensus 85 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~---------- 153 (255)
T 1fmc_A 85 KLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGG-VILTITSMAAENKN---------- 153 (255)
T ss_dssp HHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTCCC----------
T ss_pred hcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcchhhcCCC----------
Confidence 57999999997543 23345567889999999999998874 44544 99999999877432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.|.+++.++.++ |++++++|||.++++..... ....+...+..+.++ ..+
T Consensus 154 --~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~~-~~~~~~~~~~~~~~~------------~~~ 218 (255)
T 1fmc_A 154 --INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV-ITPEIEQKMLQHTPI------------RRL 218 (255)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-CCHHHHHHHHHTCSS------------CSC
T ss_pred --CCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhhc-cChHHHHHHHhcCCc------------ccC
Confidence 456789999999999999988775 89999999999999743211 112334444444332 247
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccH
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPV 385 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~ 385 (476)
++++|+|++++.++..+.. ..| ++||+.++..+|+
T Consensus 219 ~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gg~~~s~ 254 (255)
T 1fmc_A 219 GQPQDIANAALFLCSPAASWVSG-----------QILTVSGGGVQEL 254 (255)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTSCCCC
T ss_pred CCHHHHHHHHHHHhCCccccCCC-----------cEEEECCceeccC
Confidence 8899999999999976532 233 8999999988765
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-26 Score=215.55 Aligned_cols=225 Identities=19% Similarity=0.138 Sum_probs=167.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ...... ...+++++.+|++|.++++++++.. ++
T Consensus 5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 1cyd_A 5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD----LVSLAK---ECPGIEPVCVDLGDWDATEKALGGIGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH---HSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH---hccCCCcEEecCCCHHHHHHHHHHcCCC
Confidence 467899999999999999999999999999999984321 111111 1236788899999999999999854 57
Q ss_pred cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 195 d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
|+||||||.... ....++.+..+++|+.++.++++++... +..++||++||...|... ++
T Consensus 78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~ 145 (244)
T 1cyd_A 78 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------------PN 145 (244)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TT
T ss_pred CEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC------------CC
Confidence 999999997432 2234556779999999999999887543 422499999999887532 34
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 267 ASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
...|+.+|.+.|.+++.++.+ .|++++++|||.++++..........+...+.++.+ .+++++++
T Consensus 146 ~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 213 (244)
T 1cyd_A 146 LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHP------------LRKFAEVE 213 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHST------------TSSCBCHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccccCHHHHHHHHhcCC------------ccCCCCHH
Confidence 578999999999999998877 489999999999999743211011223333433322 24689999
Q ss_pred HHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 344 DVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 344 Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
|+|++++.++..+.. ..| +++++.++..
T Consensus 214 dva~~~~~l~~~~~~~~~G-----------~~~~v~gG~~ 242 (244)
T 1cyd_A 214 DVVNSILFLLSDRSASTSG-----------GGILVDAGYL 242 (244)
T ss_dssp HHHHHHHHHHSGGGTTCCS-----------SEEEESTTGG
T ss_pred HHHHHHHHHhCchhhcccC-----------CEEEECCCcc
Confidence 999999999976532 222 8899988754
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=224.63 Aligned_cols=246 Identities=10% Similarity=0.063 Sum_probs=179.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+............ ...++.++.+|++|.++++++++.+
T Consensus 24 l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 101 (302)
T 1w6u_A 24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ--TGNKVHAIQCDVRDPDMVQNTVSELIKV 101 (302)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--HSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--cCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999543211111111110 0347999999999999999888765
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++.++++++... ...++||++||.+.+...
T Consensus 102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 171 (302)
T 1w6u_A 102 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS---------- 171 (302)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC----------
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCC----------
Confidence 68999999997432 3344567789999999999998887532 222499999998776432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC-cHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM-AYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.|.+++.++.+ +|+++++||||.|++++..... ........+..+.++ ..
T Consensus 172 --~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p~------------~~ 237 (302)
T 1w6u_A 172 --GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPC------------GR 237 (302)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTT------------SS
T ss_pred --CCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCCc------------CC
Confidence 45678999999999999999877 6899999999999997321110 000111233333222 24
Q ss_pred ceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCC
Q 011841 339 FTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNT 398 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~ 398 (476)
+++++|+|++++.++..... .+| ++|++.++..+++.++++.+.+..|.
T Consensus 238 ~~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gg~~~~~~~~~~~~~~~~g~ 287 (302)
T 1w6u_A 238 LGTVEELANLAAFLCSDYASWING-----------AVIKFDGGEEVLISGEFNDLRKVTKE 287 (302)
T ss_dssp CBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTHHHHHHSTTGGGGGCCHH
T ss_pred CCCHHHHHHHHHHHcCCcccccCC-----------CEEEECCCeeeccCCccccchhhccc
Confidence 78899999999999875432 223 89999999989988888887776654
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-25 Score=212.32 Aligned_cols=228 Identities=18% Similarity=0.116 Sum_probs=167.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|.++++++++..
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMA----TKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHE 86 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999954311 11111111 1347999999999999999888743
Q ss_pred ---CccEEEEccccCC-h----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAG-V----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~-~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||... . ....++.+..+++|+.++.++++++.. .+.. +||++||.+.+....
T Consensus 87 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~~~~------- 158 (260)
T 3awd_A 87 QEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQG-VIVAIGSMSGLIVNR------- 158 (260)
T ss_dssp HHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCCS-------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCC-EEEEEecchhcccCC-------
Confidence 6799999999754 1 223344577899999999999988754 3443 999999987654321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
..+...|+.+|.+.|.+++.++.+ +|+++++||||.|+++..........+...+..+.++ .
T Consensus 159 ---~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~ 223 (260)
T 3awd_A 159 ---PQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPM------------G 223 (260)
T ss_dssp ---SSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCTT------------S
T ss_pred ---CCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCCc------------C
Confidence 123478999999999999999877 6899999999999998543110112333444433322 2
Q ss_pred eceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+++++|+|++++.++..+.. .+| ++|++.++.
T Consensus 224 ~~~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gg~ 257 (260)
T 3awd_A 224 RVGQPDEVASVVQFLASDAASLMTG-----------AIVNVDAGF 257 (260)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTT
T ss_pred CCCCHHHHHHHHHHHhCchhccCCC-----------cEEEECCce
Confidence 478999999999999876432 233 899998875
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=222.29 Aligned_cols=234 Identities=14% Similarity=0.085 Sum_probs=169.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ....... . ...+.++.+|++|+++++++++.+
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~-~-~~~~~~~~~D~~~~~~v~~~~~~~~~~ 79 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIER----ARQAAAE-I-GPAAYAVQMDVTRQDSIDAAIAATVEH 79 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHH-H-CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHH-h-CCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999984321 1111111 1 347899999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.. .+..++||++||...+.+.
T Consensus 80 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 149 (259)
T 4e6p_A 80 AGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGE---------- 149 (259)
T ss_dssp SSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCC----------
Confidence 67999999998542 234456678899999999999998753 2323489999998876332
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcC---CceEEEeeCCCCcee
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQG---KTIDVYKTQDDREVA 336 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.|.+++.++.++ |+++++|+||.|++|.... ...++...... ...... .+....
T Consensus 150 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~p~ 221 (259)
T 4e6p_A 150 --ALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDG---VDALFARYENRPRGEKKRLV---GEAVPF 221 (259)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHH---HHHHHHHHHTCCTTHHHHHH---HHHSTT
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhh---hhhhhhhhccCChHHHHHHH---hccCCC
Confidence 355789999999999999998775 8999999999999984321 11111111111 001011 112334
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
..+.+++|+|++++.++..... .+| ++|++.++..+|
T Consensus 222 ~r~~~~~dva~~v~~L~s~~~~~itG-----------~~i~vdgG~~~s 259 (259)
T 4e6p_A 222 GRMGTAEDLTGMAIFLASAESDYIVS-----------QTYNVDGGNWMS 259 (259)
T ss_dssp SSCBCTHHHHHHHHHTTSGGGTTCCS-----------CEEEESTTSSCC
T ss_pred CCCcCHHHHHHHHHHHhCCccCCCCC-----------CEEEECcChhcC
Confidence 5689999999999988865432 233 899999987654
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=209.37 Aligned_cols=216 Identities=16% Similarity=0.175 Sum_probs=168.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+..... ..++.++.+|++|+++++++++.+
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~------------~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 93 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA------------DPDIHTVAGDISKPETADRIVREGIER 93 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS------------STTEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc------------cCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999765332 237899999999999999988754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +.+.++.+..+++|+.|+.++++++ ++.+.. +||++||...+....
T Consensus 94 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~~~--------- 163 (260)
T 3un1_A 94 FGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSG-HIVSITTSLVDQPMV--------- 163 (260)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCTTTTSCBT---------
T ss_pred CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc-EEEEEechhhccCCC---------
Confidence 67999999997532 2344566788999999999999987 455544 999999988764321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|++|..... ....+....+ ...+
T Consensus 164 -~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~-----~~~~~~~~~p------------~~r~ 225 (260)
T 3un1_A 164 -GMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE-----THSTLAGLHP------------VGRM 225 (260)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG-----GHHHHHTTST------------TSSC
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH-----HHHHHhccCC------------CCCC
Confidence 1456789999999999999999887 89999999999999865421 1222222222 2346
Q ss_pred eeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 340 TYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
.+++|+|++++.+ ......+| ++|++.++...
T Consensus 226 ~~~~dva~av~~L-~~~~~itG-----------~~i~vdGG~~~ 257 (260)
T 3un1_A 226 GEIRDVVDAVLYL-EHAGFITG-----------EILHVDGGQNA 257 (260)
T ss_dssp BCHHHHHHHHHHH-HHCTTCCS-----------CEEEESTTGGG
T ss_pred cCHHHHHHHHHHh-cccCCCCC-----------cEEEECCCeec
Confidence 7899999999988 33333333 99999988654
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-26 Score=219.53 Aligned_cols=227 Identities=17% Similarity=0.105 Sum_probs=164.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--CccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--~~d~ 196 (476)
|+||||||+|+||++++++|+++|++|++++|..+.... .+.+|++|.++++++++.. ++|+
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------------~~~~D~~~~~~~~~~~~~~~~~~d~ 65 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA----------------DLSTPGGRETAVAAVLDRCGGVLDG 65 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC----------------CTTSHHHHHHHHHHHHHHHTTCCSE
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc----------------cccCCcccHHHHHHHHHHcCCCccE
Confidence 589999999999999999999999999999996543211 1568999999999988743 6799
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCC-C-------CCCCC--
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVP-F-------SESHR-- 262 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~-~-------~E~~~-- 262 (476)
||||||.... ..+++..+++|+.++.+++++|.+. +. ++||++||..+|+.....+ . +|+.+
T Consensus 66 vi~~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (255)
T 2dkn_A 66 LVCCAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQ-PAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIE 141 (255)
T ss_dssp EEECCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHH
T ss_pred EEECCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCC-ceEEEEeccccccccccccchhhhhcccchhhhhh
Confidence 9999997542 3567889999999999999987654 44 4999999999987542111 0 00000
Q ss_pred ----CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 263 ----TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 263 ----~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
...+...|+.+|.+.|.+++.++++ .|+++++||||.|+|+... .+......+.....+ . + .
T Consensus 142 ~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~------~~~~~~~~~~~~~~~---~-~-~ 210 (255)
T 2dkn_A 142 LAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQ------ASKADPRYGESTRRF---V-A-P 210 (255)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHH------HHHHCTTTHHHHHSC---C-C-T
T ss_pred hccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhh------hcccchhhHHHHHHH---H-H-H
Confidence 0135578999999999999998876 5899999999999997321 111100000000000 0 1 2
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccHHH
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPVGR 387 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~~e 387 (476)
..++++++|+|++++.++..+.. ..| ++||++++..+++.|
T Consensus 211 ~~~~~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gg~~~~~~e 252 (255)
T 2dkn_A 211 LGRGSEPREVAEAIAFLLGPQASFIHG-----------SVLFVDGGMDALMRA 252 (255)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTHHHHHCT
T ss_pred hcCCCCHHHHHHHHHHHhCCCccccee-----------eEEEecCCeEeeeec
Confidence 34689999999999999987632 222 899999987766544
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=206.89 Aligned_cols=225 Identities=19% Similarity=0.155 Sum_probs=165.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
..+++||||||+|+||++++++|+++|++|++++|+.+ ....... +..+++++.+|++|.++++++++.. ++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~i 77 (244)
T 3d3w_A 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQA----DLDSLVR---ECPGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHH---HSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHH---HcCCCCEEEEeCCCHHHHHHHHHHcCCC
Confidence 46789999999999999999999999999999998432 1111111 1236778899999999999999854 57
Q ss_pred cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 195 d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
|+||||||.... +...++.+..+++|+.++.++++++.. .+..++||++||...+... .+
T Consensus 78 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~ 145 (244)
T 3d3w_A 78 DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------------TN 145 (244)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TT
T ss_pred CEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCC------------CC
Confidence 999999997542 223445678999999999999888754 3422499999998876432 45
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 267 ASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
...|+.+|.+.|.+++.++.+ .|+++++||||.|+++..........+...+..+.+ ...+++++
T Consensus 146 ~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 213 (244)
T 3d3w_A 146 HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIP------------LGKFAEVE 213 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTCT------------TCSCBCHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhccChHHHHHHHhhCC------------CCCCcCHH
Confidence 678999999999999998876 489999999999999843210000011222222221 23588999
Q ss_pred HHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 344 DVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 344 Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
|+|++++.++..... .+| ++|++.++..
T Consensus 214 dva~~~~~l~~~~~~~~~G-----------~~~~v~gG~~ 242 (244)
T 3d3w_A 214 HVVNAILFLLSDRSGMTTG-----------STLPVEGGFW 242 (244)
T ss_dssp HHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred HHHHHHHHHcCccccCCCC-----------CEEEECCCcc
Confidence 999999999976532 233 8999988754
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=209.40 Aligned_cols=239 Identities=16% Similarity=0.079 Sum_probs=178.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..++. .... ..++.++.+|++|.++++++++.+
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~----~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (271)
T 3tzq_B 9 LENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGA----AASV--GRGAVHHVVDLTNEVSVRALIDFTIDT 82 (271)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHH----HHHH--CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH----HHHh--CCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999976543222 2222 457889999999999999988754
Q ss_pred --CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++ ++.+.. +||++||...+...
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~~-------- 153 (271)
T 3tzq_B 83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGG-AIVNISSATAHAAY-------- 153 (271)
T ss_dssp HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE-EEEEECCGGGTSBC--------
T ss_pred cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEECCHHHcCCC--------
Confidence 67999999998532 3345566789999999999999988 555544 99999998876432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|+++....... ..+...+....+. .
T Consensus 154 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~-~~~~~~~~~~~~~------------~ 216 (271)
T 3tzq_B 154 ----DMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGLP-QPIVDIFATHHLA------------G 216 (271)
T ss_dssp ----SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC---C-HHHHHHHHTTSTT------------S
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccCC-HHHHHHHHhcCCC------------C
Confidence 45678999999999999999887 58999999999999986542211 2333334433322 2
Q ss_pred eceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhC
Q 011841 338 DFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN 397 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g 397 (476)
.+..++|+|++++.++..... .+| +++++.++.......+.+.....++
T Consensus 217 r~~~p~dvA~~v~~L~s~~~~~itG-----------~~i~vdGG~~~~~~~~~~~~~~~~~ 266 (271)
T 3tzq_B 217 RIGEPHEIAELVCFLASDRAAFITG-----------QVIAADSGLLAHLPGLPQIRASVAE 266 (271)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTTTBCTTHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHhCcccCCcCC-----------CEEEECCCccccCCCccccCCcccc
Confidence 367899999999998876533 333 8999999844333444444444433
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=212.64 Aligned_cols=244 Identities=17% Similarity=0.162 Sum_probs=172.2
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC--------CchHHHHHHhh-hcCCceEEEEeecCCHHHH
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--------DPSLKRARQKL-LQKHQVFIVEGDLNDAPLL 185 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~--------~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l 185 (476)
..++|+||||||+|+||++++++|+++|++|++++|+.... .+......... ....++.++.+|++|++++
T Consensus 7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 86 (281)
T 3s55_A 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL 86 (281)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 46789999999999999999999999999999999964321 11112211111 1245789999999999999
Q ss_pred HHhhccC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCC
Q 011841 186 TKLFDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLN 252 (476)
Q Consensus 186 ~~~~~~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~ 252 (476)
+++++.+ ++|+||||||.... +.+.++.+..+++|+.++.++++++ ++.+. ++||++||...+...
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~ 165 (281)
T 3s55_A 87 ESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNY-GRIVTVSSMLGHSAN 165 (281)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGGSCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECChhhcCCC
Confidence 9988754 67999999997542 3345566789999999999999986 33444 399999998876432
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCc---eEE
Q 011841 253 TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKT---IDV 326 (476)
Q Consensus 253 ~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~---~~~ 326 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|++|..........+......... ...
T Consensus 166 ------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (281)
T 3s55_A 166 ------------FAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESV 233 (281)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHHC-------CCHHHHHHH
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhccccccccccchhHHHHH
Confidence 45678999999999999999886 489999999999999865431100000000000000 000
Q ss_pred EeeCCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 327 YKTQDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 327 ~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
+. ........+.+++|+|++++.++..... .+| +++++.++..++
T Consensus 234 ~~--~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG-----------~~i~vdgG~~~~ 279 (281)
T 3s55_A 234 FA--SLHLQYAPFLKPEEVTRAVLFLVDEASSHITG-----------TVLPIDAGATAR 279 (281)
T ss_dssp HH--HHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGG
T ss_pred HH--hhhccCcCCCCHHHHHHHHHHHcCCcccCCCC-----------CEEEECCCcccC
Confidence 00 0012225689999999999999976543 233 899999987654
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=207.11 Aligned_cols=225 Identities=16% Similarity=0.119 Sum_probs=170.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|.... .......... ...++.++.+|++|.++++++++..
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 78 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKE---KAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVS 78 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999875421 1111111111 2347889999999999999988754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 148 (246)
T 3osu_A 79 QFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSG-AIINLSSVVGAVGN--------- 148 (246)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEEcchhhcCCC---------
Confidence 67999999997532 2344566779999999999999988 445554 99999998765322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
++...|+.+|.+.+.+++.++.+ +|+++++|+||.|+++.... ....+...+..+.++ ..
T Consensus 149 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--~~~~~~~~~~~~~p~------------~r 211 (246)
T 3osu_A 149 ---PGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA--LSDELKEQMLTQIPL------------AR 211 (246)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSC--SCHHHHHHHHTTCTT------------CS
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccc--cCHHHHHHHHhcCCC------------CC
Confidence 45678999999999999998875 48999999999999986443 223445555555443 23
Q ss_pred ceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 339 FTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+.+++|+|++++.++..+.. .+| ++|++.++.
T Consensus 212 ~~~~~dva~~v~~l~s~~~~~itG-----------~~i~vdgG~ 244 (246)
T 3osu_A 212 FGQDTDIANTVAFLASDKAKYITG-----------QTIHVNGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTS
T ss_pred CcCHHHHHHHHHHHhCccccCCCC-----------CEEEeCCCc
Confidence 67789999999998876543 233 899998874
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.3e-25 Score=212.75 Aligned_cols=230 Identities=13% Similarity=0.070 Sum_probs=167.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+.. ......... ..++.++.+|++|+++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRL----HEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVR 80 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHH----HHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999954321 111111111 347899999999999999888743
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ....++.+..+++|+.++.++++++. +.+.. +||++||.+.+...
T Consensus 81 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 151 (263)
T 3ai3_A 81 SSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGG-AIIHNASICAVQPL-------- 151 (263)
T ss_dssp HHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC--------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECchhhcCCC--------
Confidence 67999999997532 22345567889999999999988864 34543 99999999887532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC---------cHHHHHHHHHcCCceEEEe
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM---------AYFFFTKDILQGKTIDVYK 328 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~---------~~~~~~~~~~~g~~~~~~~ 328 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++||||.|++|...... ....+...+....
T Consensus 152 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 221 (263)
T 3ai3_A 152 ----WYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKTAKELTKDNGGDWKGYLQSVADEH------ 221 (263)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHTTTTTCCHHHHHHHHHHHH------
T ss_pred ----CCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhhhHhhhcccCCcHHHHHHHHHhcC------
Confidence 34578999999999999998877 5899999999999997421100 0011111121110
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
.....+++++|+|++++.++..+.. .+| ++|++.++..++
T Consensus 222 -----~p~~~~~~~~dvA~~~~~l~s~~~~~~~G-----------~~~~vdgG~~~s 262 (263)
T 3ai3_A 222 -----APIKRFASPEELANFFVFLCSERATYSVG-----------SAYFVDGGMLKT 262 (263)
T ss_dssp -----CTTCSCBCHHHHHHHHHHHTSTTCTTCCS-----------CEEEESTTCCCC
T ss_pred -----CCCCCCcCHHHHHHHHHHHcCccccCCCC-----------cEEEECCCcccc
Confidence 1113588999999999999875432 233 899999987654
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-24 Score=207.75 Aligned_cols=224 Identities=15% Similarity=0.112 Sum_probs=165.0
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
+|+||||||+|+||++++++|+++|++|++++|+.+. ........ ....++.++.+|++|+++++++++..
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAET----LEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQ 77 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999985421 11111111 11346899999999999999888743
Q ss_pred --CccEEEEccccCChh-------hhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGVR-------YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~~-------~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||..... ...++.+..+++|+.++.++++.+. +.+.. +||++||...+...
T Consensus 78 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~~------- 149 (250)
T 2cfc_A 78 FGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAG-VIVNIASVASLVAF------- 149 (250)
T ss_dssp HSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC-------
T ss_pred hCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEECChhhccCC-------
Confidence 579999999975322 2345567889999999987777653 44554 99999998876432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|+++..........+...+..+.++
T Consensus 150 -----~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------ 212 (250)
T 2cfc_A 150 -----PGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQ------------ 212 (250)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCTT------------
T ss_pred -----CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCCC------------
Confidence 356789999999999999988776 899999999999998543100012233334433322
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+.+++|+|++++.++..+.. .+| +++++.++.
T Consensus 213 ~~~~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gG~ 247 (250)
T 2cfc_A 213 KEIGTAAQVADAVMFLAGEDATYVNG-----------AALVMDGAY 247 (250)
T ss_dssp CSCBCHHHHHHHHHHHHSTTCTTCCS-----------CEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHcCchhhcccC-----------CEEEECCce
Confidence 2478999999999999876532 223 899998874
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=205.45 Aligned_cols=225 Identities=16% Similarity=0.123 Sum_probs=162.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..++..... ..++.++.+|++|+++++++++.+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (257)
T 3tpc_A 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL------GAAVRFRNADVTNEADATAALAFAKQE 78 (257)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------------CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh------CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999876544332221 247889999999999999888744
Q ss_pred --CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCccccCCCC
Q 011841 193 --PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSV---------NPQPSIVWASSSSVYGLNT 253 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~---------~~~~~~V~~SS~~vyg~~~ 253 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++... +..++||++||...+...
T Consensus 79 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~- 157 (257)
T 3tpc_A 79 FGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQ- 157 (257)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCC-
T ss_pred cCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCC-
Confidence 67999999997532 2334567789999999999999987643 122489999998876432
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeC
Q 011841 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++.... ....+...+...
T Consensus 158 -----------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~--~~~~~~~~~~~~--------- 215 (257)
T 3tpc_A 158 -----------IGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDTPMMAG--MPQDVQDALAAS--------- 215 (257)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSCC----------------CC---------
T ss_pred -----------CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCChhhcc--CCHHHHHHHHhc---------
Confidence 45678999999999999998877 58999999999999984321 111111111111
Q ss_pred CCCcee-EeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 331 DDREVA-RDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 331 ~~~~~~-~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
... ..+..++|+|++++.++.. ...+| +++++.++..++
T Consensus 216 ---~p~~~r~~~~~dva~~v~~l~s~-~~itG-----------~~i~vdGG~~~~ 255 (257)
T 3tpc_A 216 ---VPFPPRLGRAEEYAALVKHICEN-TMLNG-----------EVIRLDGALRMA 255 (257)
T ss_dssp ---SSSSCSCBCHHHHHHHHHHHHHC-TTCCS-----------CEEEESTTCCC-
T ss_pred ---CCCCCCCCCHHHHHHHHHHHccc-CCcCC-----------cEEEECCCccCC
Confidence 111 3578999999999999975 33333 899999887654
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=208.69 Aligned_cols=226 Identities=17% Similarity=0.112 Sum_probs=151.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhcc---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV--- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~--- 191 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|.++++++++.
T Consensus 12 l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (266)
T 1xq1_A 12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYEL----NECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 87 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999954321 11111111 134689999999999999888864
Q ss_pred ---CCccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 192 ---VPFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 192 ---~~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
-++|+||||||..... .+.++.+..+++|+.++.++++++ ++.+.. +||++||...+...
T Consensus 88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~-------- 158 (266)
T 1xq1_A 88 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCG-NIIFMSSIAGVVSA-------- 158 (266)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-EEEEEC----------------
T ss_pred HhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEccchhccCC--------
Confidence 3679999999974321 234556778999999999999988 455554 99999998876432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.|.+++.++.++ |+++++||||.++++...... ...+...+... ....
T Consensus 159 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-~~~~~~~~~~~------------~~~~ 221 (266)
T 1xq1_A 159 ----SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVY-DDEFKKVVISR------------KPLG 221 (266)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------------
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhhc-CHHHHHHHHhc------------CCCC
Confidence 356789999999999999988775 899999999999998543210 01111111111 1123
Q ss_pred eceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 338 DFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.+++++|+|++++.++..+.. .+| +++++.++..
T Consensus 222 ~~~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gG~~ 256 (266)
T 1xq1_A 222 RFGEPEEVSSLVAFLCMPAASYITG-----------QTICVDGGLT 256 (266)
T ss_dssp --CCGGGGHHHHHHHTSGGGTTCCS-----------CEEECCCCEE
T ss_pred CCcCHHHHHHHHHHHcCccccCccC-----------cEEEEcCCcc
Confidence 478999999999999875432 233 8999988754
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.8e-24 Score=207.71 Aligned_cols=243 Identities=16% Similarity=0.131 Sum_probs=172.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC--------CchHHHHHHhh-hcCCceEEEEeecCCHHHHH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--------DPSLKRARQKL-LQKHQVFIVEGDLNDAPLLT 186 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~--------~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~ 186 (476)
..+|+||||||+|+||.+++++|+++|++|++++|..... .+......... ....++.++.+|++|+++++
T Consensus 11 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~ 90 (278)
T 3sx2_A 11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS 90 (278)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence 5789999999999999999999999999999999863211 11112111111 12457999999999999999
Q ss_pred HhhccC-----CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCC
Q 011841 187 KLFDVV-----PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 187 ~~~~~~-----~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
++++.+ ++|+||||||........++++..+++|+.++.++++++.. .+...+||++||.+.+.....
T Consensus 91 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~--- 167 (278)
T 3sx2_A 91 AALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGS--- 167 (278)
T ss_dssp HHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCC---
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCcc---
Confidence 988754 67999999998655445667788999999999999998643 332348999999876533211
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
..++...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+............. ....
T Consensus 168 -----~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 239 (278)
T 3sx2_A 168 -----ADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEFTREWLAKMAAATDTPGAM---GNAM 239 (278)
T ss_dssp -----SSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHHHHHHHCC--CTT---SCSS
T ss_pred -----CCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhhHHHHHhhccchhhhhhhh---hhhc
Confidence 11345679999999999999988775 699999999999998654321111221212212111111 2223
Q ss_pred eeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
. ..+++++|+|++++.++.... ..+| +++++.++.
T Consensus 240 p-~~~~~p~dvA~~v~~l~s~~~~~itG-----------~~i~vdGG~ 275 (278)
T 3sx2_A 240 P-VEVLAPEDVANAVAWLVSDQARYITG-----------VTLPVDAGF 275 (278)
T ss_dssp S-CSSBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTT
T ss_pred C-cCcCCHHHHHHHHHHHhCcccccccC-----------CEEeECCCc
Confidence 3 678999999999999887643 2333 899998875
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=208.03 Aligned_cols=233 Identities=15% Similarity=0.066 Sum_probs=170.1
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+ |+||++++++|+++|++|++++|+.+ ..+........ ..++.++.+|++|+++++++++.+
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEA---LGGALLFRADVTQDEELDALFAGVK 81 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHH---TTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHHHHH
Confidence 467899999999 99999999999999999999999652 11112221111 124789999999999999888754
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++...-. .++||++||.+.+...
T Consensus 82 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------- 154 (261)
T 2wyu_A 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV------- 154 (261)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC-------
T ss_pred HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCC-------
Confidence 67999999997542 234456678999999999999999876421 1389999998765321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..........+...+.+..++
T Consensus 155 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~------------ 217 (261)
T 2wyu_A 155 -----PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPL------------ 217 (261)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTT------------
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCC------------
Confidence 345689999999999999988775 899999999999998543221223333333333222
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccHHH
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPVGR 387 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~~e 387 (476)
..+.+++|+|++++.++..... .+| ++|++.++..++..+
T Consensus 218 ~~~~~~~dva~~v~~l~s~~~~~~tG-----------~~~~vdgG~~~~~~~ 258 (261)
T 2wyu_A 218 RRNITQEEVGNLGLFLLSPLASGITG-----------EVVYVDAGYHIMGME 258 (261)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGBC--
T ss_pred CCCCCHHHHHHHHHHHcChhhcCCCC-----------CEEEECCCccccCCC
Confidence 1367899999999999865432 233 899999987655433
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-25 Score=210.74 Aligned_cols=229 Identities=13% Similarity=0.016 Sum_probs=166.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|.++++++++.+
T Consensus 12 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 87 (260)
T 2zat_A 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENV----DRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVN 87 (260)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999954321 11111111 1346889999999999998888743
Q ss_pred ---CccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||... .+.+.++.+..+++|+.++.++++++. +.+.. +||++||...|...
T Consensus 88 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 158 (260)
T 2zat_A 88 LHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGG-SVLIVSSVGAYHPF-------- 158 (260)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCGGGTSCC--------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEEechhhcCCC--------
Confidence 6799999999743 123345567889999999999988864 44543 99999999887432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..............+... ....
T Consensus 159 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~------------~~~~ 222 (260)
T 2zat_A 159 ----PNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKES------------LRIR 222 (260)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHH------------HTCS
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcccChHHHHHHHhc------------CCCC
Confidence 456789999999999999988775 899999999999987432100000011111111 1123
Q ss_pred eceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 338 DFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
.+++++|+|++++.++..+.. .+| +++++.++..++
T Consensus 223 ~~~~~~dva~~v~~l~s~~~~~~tG-----------~~~~vdgG~~~s 259 (260)
T 2zat_A 223 RLGNPEDCAGIVSFLCSEDASYITG-----------ETVVVGGGTASR 259 (260)
T ss_dssp SCBCGGGGHHHHHHHTSGGGTTCCS-----------CEEEESTTCCCC
T ss_pred CCCCHHHHHHHHHHHcCcccCCccC-----------CEEEECCCcccc
Confidence 478999999999999876533 233 899999988765
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=209.78 Aligned_cols=226 Identities=16% Similarity=0.130 Sum_probs=165.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|... ........... ...++.++.+|++|+++++++++.+
T Consensus 19 ~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~---~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 19 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSS---KAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCch---HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998332 11111111111 1347889999999999999888743
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCcccc-CCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVY-GLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~---~~~~~~V~~SS~~vy-g~~~~~~~~E~~ 261 (476)
++|+||||||.... ....++.+..+++|+.++.++++++... + ++||++||.+.+ ...
T Consensus 96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~iv~~sS~~~~~~~~--------- 164 (274)
T 1ja9_A 96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG--GRIILTSSIAAVMTGI--------- 164 (274)
T ss_dssp HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE--EEEEEECCGGGTCCSC---------
T ss_pred HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CEEEEEcChHhccCCC---------
Confidence 67999999997532 2334556789999999999999988654 3 399999998876 322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC-----------CCcHHHHHHHHHcCCceEEE
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP-----------DMAYFFFTKDILQGKTIDVY 327 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~-----------~~~~~~~~~~~~~g~~~~~~ 327 (476)
.+...|+.+|.+.|.+++.++.++ |++++++|||.++++.... ......+...+..+.
T Consensus 165 ---~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 236 (274)
T 1ja9_A 165 ---PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMN----- 236 (274)
T ss_dssp ---CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTS-----
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhcccccccccccccCchHHHHHHHHhcC-----
Confidence 345689999999999999988775 8999999999998863210 001012222222222
Q ss_pred eeCCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 328 KTQDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
...++++++|+|++++.++..+.. ..| ++|++.++.
T Consensus 237 -------~~~~~~~~~dva~~i~~l~~~~~~~~~G-----------~~~~v~gG~ 273 (274)
T 1ja9_A 237 -------PLKRIGYPADIGRAVSALCQEESEWING-----------QVIKLTGGG 273 (274)
T ss_dssp -------TTSSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTC
T ss_pred -------CCCCccCHHHHHHHHHHHhCcccccccC-----------cEEEecCCc
Confidence 223589999999999999976533 233 899998863
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=207.45 Aligned_cols=227 Identities=15% Similarity=0.128 Sum_probs=167.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC-CCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~-~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+ .+..+....... ....++.++.+|++|+++++++++..
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMR---ADGGDAAFFAADLATSEACQQLVDEFVA 81 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHH---HTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHH---hcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999997 432221111111 11347899999999999999988743
Q ss_pred ---CccEEEEcccc-CCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cC----CCCeEEEecCccccCCCCCCC
Q 011841 193 ---PFTHVLHLAAQ-AGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VN----PQPSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 193 ---~~d~Vi~~Ag~-~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~----~~~~~V~~SS~~vyg~~~~~~ 256 (476)
++|+||||||. ... ....++.+..+++|+.++.++++++.. .+ ...+||++||...+...
T Consensus 82 ~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---- 157 (258)
T 3afn_B 82 KFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGG---- 157 (258)
T ss_dssp HHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCC----
T ss_pred HcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCC----
Confidence 57999999996 321 223344667899999999999887642 22 11489999998766410
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
..+...|+.+|.+.|.+++.++.++ |++++++|||.++++..... ...+...+..+.++
T Consensus 158 -------~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~--------- 219 (258)
T 3afn_B 158 -------GPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHADK--TQDVRDRISNGIPM--------- 219 (258)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTTC--CHHHHHHHHTTCTT---------
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCccccccccc--CHHHHHHHhccCCC---------
Confidence 1456789999999999999988775 89999999999999854321 12344444444322
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcCc--CCCCCCCCCCCCCceEEEEcCCC
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAGK--STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~~--~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+++++|+|++++.++..+.. .+| ++|++.++.
T Consensus 220 ---~~~~~~~dva~~~~~l~~~~~~~~~~G-----------~~~~v~gg~ 255 (258)
T 3afn_B 220 ---GRFGTAEEMAPAFLFFASHLASGYITG-----------QVLDINGGQ 255 (258)
T ss_dssp ---CSCBCGGGTHHHHHHHHCHHHHTTCCS-----------EEEEESTTS
T ss_pred ---CcCCCHHHHHHHHHHHhCcchhccccC-----------CEEeECCCc
Confidence 2578999999999999976532 233 899998875
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=209.54 Aligned_cols=230 Identities=14% Similarity=0.109 Sum_probs=170.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+....... ....++.++.+|++|+++++++++.+
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIR---QAGGKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp CTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999995432211111111 12357899999999999999888754
Q ss_pred --CccEEEEccccCCh---hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~---~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++. +.+. ++||++||...+...
T Consensus 87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~----------- 154 (256)
T 3gaf_A 87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGG-GAILNISSMAGENTN----------- 154 (256)
T ss_dssp HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTCCC-----------
T ss_pred cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEcCHHHcCCC-----------
Confidence 67999999997543 33455677899999999999999863 3443 499999998876322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ........+....++ ..+.
T Consensus 155 -~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~p~------------~r~~ 220 (256)
T 3gaf_A 155 -VRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALATV-LTPEIERAMLKHTPL------------GRLG 220 (256)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHH-CCHHHHHHHHTTCTT------------SSCB
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhhc-cCHHHHHHHHhcCCC------------CCCC
Confidence 456789999999999999988775 89999999999988732100 002233333333322 3478
Q ss_pred eHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccH
Q 011841 341 YIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPV 385 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~ 385 (476)
+++|+|++++.++..... .+| +++++.++...++
T Consensus 221 ~~~dva~~~~~L~s~~~~~itG-----------~~i~vdgG~~~~~ 255 (256)
T 3gaf_A 221 EAQDIANAALFLCSPAAAWISG-----------QVLTVSGGGVQEL 255 (256)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTSCCC-
T ss_pred CHHHHHHHHHHHcCCcccCccC-----------CEEEECCCccccC
Confidence 899999999998875432 233 9999999877654
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-24 Score=204.31 Aligned_cols=233 Identities=16% Similarity=0.052 Sum_probs=162.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc--------CCceEEEEeecCCHHHHHH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--------KHQVFIVEGDLNDAPLLTK 187 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~--------~~~v~~~~~Dl~d~~~l~~ 187 (476)
.++++||||||+|+||++++++|+++|++|++++|+.+. .......... ..++.++.+|++|.+++++
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 80 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAA----AQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARC 80 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHTC------------CCEEEECCTTSHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHH----HHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHH
Confidence 467899999999999999999999999999999995421 1111111110 1468899999999999998
Q ss_pred hhccC-----Cc-cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCC
Q 011841 188 LFDVV-----PF-THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNT 253 (476)
Q Consensus 188 ~~~~~-----~~-d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~ 253 (476)
+++.+ ++ |+||||||.... ..+.++.+..+++|+.++.++++++... +..++||++||...+...
T Consensus 81 ~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~- 159 (264)
T 2pd6_A 81 LLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGN- 159 (264)
T ss_dssp HHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCC-
T ss_pred HHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCC-
Confidence 88765 45 999999997542 2244567789999999999999987653 312489999998654321
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeC
Q 011841 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (476)
.+...|+.+|.+.|.+++.++.+ +|+++++||||.++++.... ....+...+..+.
T Consensus 160 -----------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~-------- 218 (264)
T 2pd6_A 160 -----------VGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQK--VPQKVVDKITEMI-------- 218 (264)
T ss_dssp -----------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC------------CTGGGC--------
T ss_pred -----------CCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccchhh--cCHHHHHHHHHhC--------
Confidence 35678999999999999998877 68999999999999985432 1111111111111
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcccHHHHH
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLV 389 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~ 389 (476)
....+++++|+|++++.++..+. ...| +++++.++..++....+
T Consensus 219 ----~~~~~~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gg~~~~~~~~~ 263 (264)
T 2pd6_A 219 ----PMGHLGDPEDVADVVAFLASEDSGYITG-----------TSVEVTGGLFMAENLYF 263 (264)
T ss_dssp ----TTCSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTC--------
T ss_pred ----CCCCCCCHHHHHHHHHHHcCCcccCCCC-----------CEEEECCCceeccccCC
Confidence 11347899999999999987643 2222 89999998876655443
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=208.60 Aligned_cols=236 Identities=14% Similarity=0.111 Sum_probs=164.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|.... .......... ....+.++.+|++|.++++++++.+
T Consensus 23 l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 99 (281)
T 3v2h_A 23 MMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPD---EIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVA 99 (281)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHH---HHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChH---HHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999984321 1111222211 1457899999999999999888754
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++ ++.+.. +||++||...+...
T Consensus 100 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~-------- 170 (281)
T 3v2h_A 100 DRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWG-RIINIASAHGLVAS-------- 170 (281)
T ss_dssp HHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC--------
T ss_pred HHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECCcccccCC--------
Confidence 67999999998543 2244566789999999999999987 444443 89999998865322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCce-EEEeeCCCCcee
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTI-DVYKTQDDREVA 336 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~ 336 (476)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++....................+ ..+ ..+...
T Consensus 171 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ 243 (281)
T 3v2h_A 171 ----PFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQIPDQARTRGITEEQVINEVM---LKGQPT 243 (281)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-------------------------------CCTT
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhcchhhhhcCCCHHHHHHHHH---HhcCCC
Confidence 445789999999999999988775 899999999999998533211000000000000000 011 223445
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+++++|+|++++.++..... .+| +++++.++.
T Consensus 244 ~r~~~~edvA~~v~~L~s~~a~~itG-----------~~i~vdGG~ 278 (281)
T 3v2h_A 244 KKFITVEQVASLALYLAGDDAAQITG-----------THVSMDGGW 278 (281)
T ss_dssp CSCBCHHHHHHHHHHHHSSGGGGCCS-----------CEEEESTTG
T ss_pred CCccCHHHHHHHHHHHcCCCcCCCCC-----------cEEEECCCc
Confidence 6799999999999998876532 333 899998874
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-24 Score=207.15 Aligned_cols=239 Identities=17% Similarity=0.163 Sum_probs=168.9
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC---------CchHHHHHHhhh-cCCceEEEEeecCCHHH
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---------DPSLKRARQKLL-QKHQVFIVEGDLNDAPL 184 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~---------~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~ 184 (476)
..++|+||||||+|+||++++++|+++|++|++++|..... .+.......... ....+.++.+|++|+++
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 46789999999999999999999999999999999853211 111222222111 23578899999999999
Q ss_pred HHHhhccC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCC
Q 011841 185 LTKLFDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGL 251 (476)
Q Consensus 185 l~~~~~~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~ 251 (476)
++++++.+ ++|+||||||.... +.+.++.+..+++|+.++.++++++. +.+...+||++||...+..
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 171 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKA 171 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccC
Confidence 99988754 67999999998543 23445667789999999999998873 3332348999999887633
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEe
Q 011841 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYK 328 (476)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~ 328 (476)
. .+...|+.+|.+.+.+++.++.+ +|+++++|+||.|+++..........+.........+...
T Consensus 172 ~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (280)
T 3pgx_A 172 T------------PGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPM- 238 (280)
T ss_dssp C------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHHHHHHHHHCGGGGGGSCCB-
T ss_pred C------------CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhhhhhhhhcCchhhhhhhhc-
Confidence 2 45678999999999999998877 5899999999999998654211111111100000111111
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
......+++++|+|++++.++..... .+| +++++.++.
T Consensus 239 ----~~~~~r~~~p~dvA~~v~~L~s~~~~~itG-----------~~i~vdGG~ 277 (280)
T 3pgx_A 239 ----PVQPNGFMTADEVADVVAWLAGDGSGTLTG-----------TQIPVDKGA 277 (280)
T ss_dssp ----TTBCSSCBCHHHHHHHHHHHHSGGGTTCSS-----------CEEEESTTG
T ss_pred ----ccCCCCCCCHHHHHHHHHHHhCccccCCCC-----------CEEEECCCc
Confidence 11112489999999999998866442 233 899998874
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=206.86 Aligned_cols=229 Identities=12% Similarity=0.054 Sum_probs=169.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEE-eCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~-~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+|+||++++++|+++|++|+++ +|+.+. ......... ...++.++.+|++|+++++++++.+
T Consensus 2 ~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 77 (258)
T 3oid_A 2 EQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKA----ALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQID 77 (258)
T ss_dssp -CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHH----HHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHH----HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999999999997 663321 111111111 1347999999999999999988765
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+. .+||++||.+.+...
T Consensus 78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~-------- 148 (258)
T 3oid_A 78 ETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGG-GHIVSISSLGSIRYL-------- 148 (258)
T ss_dssp HHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC-EEEEEEEEGGGTSBC--------
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECchhhCCCC--------
Confidence 78999999996432 23445566789999999999998873 4443 399999998876332
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+...+....++ .
T Consensus 149 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------~ 212 (258)
T 3oid_A 149 ----ENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPA------------G 212 (258)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCTT------------S
T ss_pred ----CCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCCC------------C
Confidence 456789999999999999998775 799999999999987543222222333433333222 2
Q ss_pred eceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 338 DFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
.+.+++|+|++++.++..... .+| +++++.++....
T Consensus 213 r~~~~~dva~~v~~L~s~~~~~itG-----------~~i~vdGG~~~~ 249 (258)
T 3oid_A 213 RMVEIKDMVDTVEFLVSSKADMIRG-----------QTIIVDGGRSLL 249 (258)
T ss_dssp SCBCHHHHHHHHHHHTSSTTTTCCS-----------CEEEESTTGGGB
T ss_pred CCcCHHHHHHHHHHHhCcccCCccC-----------CEEEECCCccCC
Confidence 478899999999998876532 333 999999886543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-24 Score=206.17 Aligned_cols=229 Identities=14% Similarity=0.081 Sum_probs=165.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhcc---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV--- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~--- 191 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|+++++++++.
T Consensus 7 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (260)
T 2ae2_A 7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKEL----NDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN 82 (260)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999954321 11111111 134688999999999999888853
Q ss_pred ---CCccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 192 ---VPFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 192 ---~~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
-++|+||||||.... +.+.++.+..+++|+.++.++++++. +.+. ++||++||...+...
T Consensus 83 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 153 (260)
T 2ae2_A 83 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASER-GNVVFISSVSGALAV-------- 153 (260)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSS-EEEEEECCGGGTSCC--------
T ss_pred HcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhccCC--------
Confidence 367999999997432 23445667899999999999999874 4454 399999998865421
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC---CCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR---PDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
++...|+.+|.+.|.+++.++.++ |+++++|+||.+.++... ........+..+....+
T Consensus 154 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~----------- 218 (260)
T 2ae2_A 154 ----PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCA----------- 218 (260)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTST-----------
T ss_pred ----CCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcCC-----------
Confidence 345789999999999999988775 899999999999886311 00000011112222211
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
...+++++|+|++++.++..+.. .+| +++++.++...+
T Consensus 219 -~~~~~~~~dvA~~v~~l~s~~~~~~tG-----------~~~~vdgG~~~~ 257 (260)
T 2ae2_A 219 -LRRMGEPKELAAMVAFLCFPAASYVTG-----------QIIYVDGGLMAN 257 (260)
T ss_dssp -TCSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGC
T ss_pred -CCCCCCHHHHHHHHHHHcCccccCCCC-----------CEEEECCCcccc
Confidence 23478999999999998865432 233 899999886543
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=207.44 Aligned_cols=230 Identities=12% Similarity=0.082 Sum_probs=170.0
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+ |+||++++++|+++|++|++++|+. ...+........ .....++.+|++|+++++++++.+
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQ---LGSDIVLQCDVAEDASIDTMFAELG 82 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHh---cCCcEEEEccCCCHHHHHHHHHHHH
Confidence 467899999999 9999999999999999999999965 222222222221 124578999999999999888743
Q ss_pred ----CccEEEEccccCCh--------h-hhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------R-YAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~-~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|+||||||.... + .+.++.+..+++|+.++.++++++...-. .++||++||.+.+...
T Consensus 83 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------ 156 (265)
T 1qsg_A 83 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI------ 156 (265)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC------
T ss_pred HHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCC------
Confidence 67999999997542 1 34456678999999999999999876421 1389999998765322
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.+...|+.+|.+.+.+++.++.++ |+++++||||.|+++..........+...+..+.++
T Consensus 157 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~----------- 219 (265)
T 1qsg_A 157 ------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPI----------- 219 (265)
T ss_dssp ------TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT-----------
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCC-----------
Confidence 345789999999999999998875 899999999999998543221223333333333222
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
..+.+++|+|++++.++..... .+| ++|++.++..++
T Consensus 220 -~~~~~~~dva~~v~~l~s~~~~~~tG-----------~~~~vdgG~~~~ 257 (265)
T 1qsg_A 220 -RRTVTIEDVGNSAAFLCSDLSAGISG-----------EVVHVDGGFSIA 257 (265)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTGGGB
T ss_pred -CCCCCHHHHHHHHHHHhCchhcCccC-----------CEEEECCCcCCC
Confidence 1367899999999999875432 233 899999886544
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.3e-24 Score=203.02 Aligned_cols=215 Identities=18% Similarity=0.133 Sum_probs=164.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----C
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----P 193 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~----~ 193 (476)
+|+||||||+|+||++++++|+++|++|++++|..+ . ..+.++.+|++|+++++++++.+ +
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~--------------~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 66 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G--------------EDLIYVEGDVTREEDVRRAVARAQEEAP 66 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S--------------SSSEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c--------------cceEEEeCCCCCHHHHHHHHHHHHhhCC
Confidence 579999999999999999999999999999999654 1 24588999999999999988743 6
Q ss_pred ccEEEEccccCChhh----hh----cChHHHHHHHHHHHHHHHHHHHhcCC---------CCeEEEecCccccCCCCCCC
Q 011841 194 FTHVLHLAAQAGVRY----AM----QNPQSYVASNIAGFVNLLEVCKSVNP---------QPSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~----~~----~~~~~~~~~nv~gt~~ll~~a~~~~~---------~~~~V~~SS~~vyg~~~~~~ 256 (476)
+|+||||||...... .. ++.+..+++|+.++.++++++..... ..+||++||...+...
T Consensus 67 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---- 142 (242)
T 1uay_A 67 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ---- 142 (242)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC----
T ss_pred ceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC----
Confidence 799999999744211 11 15678899999999999998865321 1289999999887532
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|+++..... ...+...+..+.++ .
T Consensus 143 --------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~--~------ 204 (242)
T 1uay_A 143 --------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL--PEKAKASLAAQVPF--P------ 204 (242)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS--CHHHHHHHHTTCCS--S------
T ss_pred --------CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhcc--chhHHHHHHhhCCC--c------
Confidence 356789999999999999888764 89999999999999743221 12233334433322 0
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
..+++++|+|++++.++.. ....| ++|++.++..++
T Consensus 205 ---~~~~~~~dva~~~~~l~~~-~~~~G-----------~~~~v~gG~~~~ 240 (242)
T 1uay_A 205 ---PRLGRPEEYAALVLHILEN-PMLNG-----------EVVRLDGALRMA 240 (242)
T ss_dssp ---CSCCCHHHHHHHHHHHHHC-TTCCS-----------CEEEESTTCCCC
T ss_pred ---ccCCCHHHHHHHHHHHhcC-CCCCC-----------cEEEEcCCeecC
Confidence 2378999999999999987 33333 899999887554
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=205.68 Aligned_cols=226 Identities=19% Similarity=0.132 Sum_probs=163.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCce-EEEEeecCCHHHHHHhhcc---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQV-FIVEGDLNDAPLLTKLFDV--- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~~~--- 191 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ........ ..++ .++.+|++|.++++++++.
T Consensus 9 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (254)
T 2wsb_A 9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAA----LDRAAQEL--GAAVAARIVADVTDAEAMTAAAAEAEA 82 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHH--GGGEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHh--cccceeEEEEecCCHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999995321 11111111 2356 8899999999999988864
Q ss_pred -CCccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 192 -VPFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 192 -~~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
.++|+||||||..... ...++.+..+++|+.++.++++++ ++.+.. +||++||...+....
T Consensus 83 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~~--------- 152 (254)
T 2wsb_A 83 VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAG-AIVNLGSMSGTIVNR--------- 152 (254)
T ss_dssp HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCCS---------
T ss_pred hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEecchhccCCC---------
Confidence 2679999999975431 223445678999999987777765 445554 999999988764321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
..+...|+.+|.+.|.+++.++.++ |+++++||||.++++..........+...+....+. ..+
T Consensus 153 -~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------~~~ 219 (254)
T 2wsb_A 153 -PQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPM------------GRC 219 (254)
T ss_dssp -SSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTSTT------------SSC
T ss_pred -CCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccccChHHHHHHHhcCCC------------CCC
Confidence 1334789999999999999988775 899999999999997322100001223333332221 247
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
++++|+|++++.++..+.. .+| +++++.++.
T Consensus 220 ~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gG~ 251 (254)
T 2wsb_A 220 GEPSEIAAAALFLASPAASYVTG-----------AILAVDGGY 251 (254)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred CCHHHHHHHHHHHhCcccccccC-----------CEEEECCCE
Confidence 8999999999999876432 233 899998864
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-24 Score=204.61 Aligned_cols=228 Identities=15% Similarity=0.050 Sum_probs=170.0
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhhccC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
..++|+||||||+|+||++++++|+++|++|++++|+.+.. ......... ..++.++.+|++|+++++++++..
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADI----DACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 36789999999999999999999999999999999954322 111222211 247999999999999999888744
Q ss_pred -----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++... +.. +||++||...+..
T Consensus 83 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~~~~~-------- 153 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSG-RVVLTSSITGPIT-------- 153 (262)
T ss_dssp HHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSC-EEEEECCSBTTTB--------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEechhhccC--------
Confidence 67999999997432 2344566778999999999999887543 544 9999999774210
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
..++...|+.+|.+.+.+++.++.+ +|+++++|+||.|+++..... ...+...+.+..+.
T Consensus 154 ---~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~------------ 216 (262)
T 3pk0_A 154 ---GYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLEN--GEEYIASMARSIPA------------ 216 (262)
T ss_dssp ---CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHTT--CHHHHHHHHTTSTT------------
T ss_pred ---CCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCcccccc--CHHHHHHHHhcCCC------------
Confidence 1145678999999999999999887 589999999999998743211 12334444444332
Q ss_pred EeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 337 RDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..+..++|+|++++.++.... ..+| +++++.++..+
T Consensus 217 ~r~~~p~dva~~v~~L~s~~~~~itG-----------~~i~vdGG~~~ 253 (262)
T 3pk0_A 217 GALGTPEDIGHLAAFLATKEAGYITG-----------QAIAVDGGQVL 253 (262)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTTC
T ss_pred CCCcCHHHHHHHHHHHhCccccCCcC-----------CEEEECCCeec
Confidence 236789999999999887643 2333 89999988654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=205.46 Aligned_cols=257 Identities=14% Similarity=0.115 Sum_probs=175.6
Q ss_pred CCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC--------CchHHHHHHhh-hcCCceEEEEeecCCHH
Q 011841 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--------DPSLKRARQKL-LQKHQVFIVEGDLNDAP 183 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~--------~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~ 183 (476)
+...++|+||||||+|+||++++++|+++|++|++++|..... .+......... ....++.++.+|++|.+
T Consensus 5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 84 (287)
T 3pxx_A 5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRA 84 (287)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHH
T ss_pred ccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHH
Confidence 3346789999999999999999999999999999999863321 11111111111 12457999999999999
Q ss_pred HHHHhhccC-----CccEEEEccccCChh--hhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCC
Q 011841 184 LLTKLFDVV-----PFTHVLHLAAQAGVR--YAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQV 255 (476)
Q Consensus 184 ~l~~~~~~~-----~~d~Vi~~Ag~~~~~--~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~ 255 (476)
+++++++.. ++|+||||||..... .+.++.+..+++|+.++.++++++..... ..+||++||.+.+......
T Consensus 85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~ 164 (287)
T 3pxx_A 85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQP 164 (287)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccc
Confidence 999888754 679999999985432 34556778999999999999999876532 2489999998876544333
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCc----eEEEe
Q 011841 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKT----IDVYK 328 (476)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~----~~~~~ 328 (476)
+..+..+. .+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+......... ....
T Consensus 165 ~~~~~~~~-~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 242 (287)
T 3pxx_A 165 PGAGGPQG-PGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFRPDLEAPSRADALLAFP- 242 (287)
T ss_dssp C-----CH-HHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHGG-
T ss_pred ccccccCC-CccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccchhhhhccccccchhHHHHhhhh-
Confidence 33333322 455689999999999999998876 89999999999999864421111000000000000 0000
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
........+.+++|+|++++.++.... ..+| +++++.++..+.
T Consensus 243 --~~~~~~~~~~~p~dva~~v~fL~s~~a~~itG-----------~~i~vdGG~~~~ 286 (287)
T 3pxx_A 243 --AMQAMPTPYVEASDISNAVCFLASDESRYVTG-----------LQFKVDAGAMLK 286 (287)
T ss_dssp --GGCSSSCSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGG
T ss_pred --hhcccCCCCCCHHHHHhhHheecchhhcCCCC-----------ceEeECchhhhc
Confidence 001112568999999999999886543 3333 899999986543
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=198.95 Aligned_cols=225 Identities=16% Similarity=0.083 Sum_probs=155.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ...++.++.+|++|+++++++++.+
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~-------------~~~~~~~~~~D~~d~~~~~~~~~~~~~~ 71 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ-------------EQYPFATEVMDVADAAQVAQVCQRLLAE 71 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS-------------SCCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh-------------hcCCceEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999996541 1124888999999999999888743
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++ ++.+.. +||++||...+...
T Consensus 72 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~~~~~~---------- 140 (250)
T 2fwm_X 72 TERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGG-AIVTVASDAAHTPR---------- 140 (250)
T ss_dssp CSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCC-EEEEECchhhCCCC----------
Confidence 67999999997432 2244567789999999999999987 445544 99999998876321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHH-HHHcCCceEEEeeCCCCceeEe
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTK-DILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|+++..........+.. .+..... .+ ........
T Consensus 141 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~p~~~ 213 (250)
T 2fwm_X 141 --IGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGE--QF---KLGIPLGK 213 (250)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------------------------------------
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCccccccccChhHHHHHHhhhhh--cc---cccCCCCC
Confidence 456789999999999999988774 8999999999999985322100000000 0100000 00 00111234
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
+.+++|+|++++.++..+. ..+| +++++.++..
T Consensus 214 ~~~p~dvA~~v~~l~s~~~~~~tG-----------~~i~vdGG~~ 247 (250)
T 2fwm_X 214 IARPQEIANTILFLASDLASHITL-----------QDIVVDGGST 247 (250)
T ss_dssp --CHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTT
T ss_pred CcCHHHHHHHHHHHhCccccCCCC-----------CEEEECCCcc
Confidence 7899999999999987653 2233 8999988754
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-24 Score=207.03 Aligned_cols=231 Identities=17% Similarity=0.081 Sum_probs=172.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ........ ..++.++.+|++|.++++++++.+
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESN----IARIREEF--GPRVHALRSDIADLNEIAVLGAAAGQT 79 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHH
Confidence 577999999999999999999999999999999995431 22222221 347999999999999998887654
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++...-. ..+||++||.+.+... +
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------~ 147 (255)
T 4eso_A 80 LGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGH------------P 147 (255)
T ss_dssp HSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBC------------T
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCC------------C
Confidence 68999999998543 224556778999999999999999865321 2389999998876432 4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc----HHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA----YFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
+...|+.+|.+.+.+.+.++.++ |+++++|+||.|.+|....... ...+........++ ..
T Consensus 148 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~------------~r 215 (255)
T 4eso_A 148 GMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPM------------KR 215 (255)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTT------------SS
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCC------------CC
Confidence 56789999999999999988775 8999999999999985432111 11222222222222 23
Q ss_pred ceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHH
Q 011841 339 FTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGR 387 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~e 387 (476)
+.+++|+|++++.++......+| +++++.++...++.+
T Consensus 216 ~~~pedvA~~v~~L~s~~~~itG-----------~~i~vdGG~~~~l~~ 253 (255)
T 4eso_A 216 NGTADEVARAVLFLAFEATFTTG-----------AKLAVDGGLGQKLST 253 (255)
T ss_dssp CBCHHHHHHHHHHHHHTCTTCCS-----------CEEEESTTTTTTBCC
T ss_pred CcCHHHHHHHHHHHcCcCcCccC-----------CEEEECCCccccCcC
Confidence 67899999999988875333343 999999987766544
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=203.07 Aligned_cols=220 Identities=16% Similarity=0.149 Sum_probs=159.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+.. ... ....++.++.+|++|+++++++++.+
T Consensus 25 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----~~~----~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 96 (260)
T 3gem_A 25 LSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHAS----VTE----LRQAGAVALYGDFSCETGIMAFIDLLKTQ 96 (260)
T ss_dssp --CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHH----HHH----HHHHTCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHH----HHH----HHhcCCeEEECCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999976421 111 11225889999999999999888753
Q ss_pred --CccEEEEccccCCh---hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~---~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ....++.+..+++|+.++.++++++.. .+. .+||++||...+.+.
T Consensus 97 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~----------- 164 (260)
T 3gem_A 97 TSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEV-ADIVHISDDVTRKGS----------- 164 (260)
T ss_dssp CSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGGTCC-----------
T ss_pred cCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cEEEEECChhhcCCC-----------
Confidence 68999999997443 223445667999999999999988743 343 499999998876432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.+...|+.+|.+.+.+++.++.++ ++++++|+||.|.++..... .+...+....++ ..+..
T Consensus 165 -~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~~----~~~~~~~~~~p~------------~r~~~ 227 (260)
T 3gem_A 165 -SKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDDA----AYRANALAKSAL------------GIEPG 227 (260)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC-------------------CCS------------CCCCC
T ss_pred -CCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCCH----HHHHHHHhcCCC------------CCCCC
Confidence 456789999999999999998886 49999999999988743211 122222222222 23556
Q ss_pred HHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 342 IDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
++|+|++++.+++. ...+| +++++.++..++
T Consensus 228 ~edva~~v~~L~~~-~~itG-----------~~i~vdGG~~~~ 258 (260)
T 3gem_A 228 AEVIYQSLRYLLDS-TYVTG-----------TTLTVNGGRHVK 258 (260)
T ss_dssp THHHHHHHHHHHHC-SSCCS-----------CEEEESTTTTTC
T ss_pred HHHHHHHHHHHhhC-CCCCC-----------CEEEECCCcccC
Confidence 89999999999853 33333 999999987654
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=203.97 Aligned_cols=227 Identities=13% Similarity=0.062 Sum_probs=167.2
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+ |+||+++++.|+++|++|++++|+.+ ..+........ ..++.++.+|++|.++++++++.+
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~---~~~~~~~~~Dl~~~~~v~~~~~~~~ 94 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKG---FGSDLVVKCDVSLDEDIKNLKKFLE 94 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHh---cCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 567899999999 99999999999999999999999652 11122222111 124788999999999999888754
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecCccccCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP--QPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~--~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++..... .++||++||.+.+...
T Consensus 95 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~------ 168 (285)
T 2p91_A 95 ENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVV------ 168 (285)
T ss_dssp HHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBC------
T ss_pred HHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCC------
Confidence 67999999997543 234456678999999999999999876432 2499999998765322
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..........+...+....++
T Consensus 169 ------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~----------- 231 (285)
T 2p91_A 169 ------PHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPF----------- 231 (285)
T ss_dssp ------TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTT-----------
T ss_pred ------CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCC-----------
Confidence 345789999999999999988775 899999999999998643322223333333332222
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+.+++|+|++++.++..... .+| ++|++.++.
T Consensus 232 -~~~~~~~dva~~~~~l~s~~~~~~tG-----------~~~~vdgg~ 266 (285)
T 2p91_A 232 -GKPITIEDVGDTAVFLCSDWARAITG-----------EVVHVDNGY 266 (285)
T ss_dssp -SSCCCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTG
T ss_pred -CCCcCHHHHHHHHHHHcCCcccCCCC-----------CEEEECCCc
Confidence 1367899999999999865432 233 889998874
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-24 Score=203.91 Aligned_cols=228 Identities=15% Similarity=0.090 Sum_probs=163.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ...... .. . .++.+|++|+++++++++.+
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-----~~~~~~-~~--~-~~~~~D~~~~~~~~~~~~~~~~~ 74 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-----KEVAEA-IG--G-AFFQVDLEDERERVRFVEEAAYA 74 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-----HHHHHH-HT--C-EEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-----HHHHHH-hh--C-CEEEeeCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999996642 111111 11 4 78999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.. .+. ++||++||.+.+.+.
T Consensus 75 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~---------- 143 (256)
T 2d1y_A 75 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGG-GAIVNVASVQGLFAE---------- 143 (256)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSBC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEccccccCCC----------
Confidence 67999999997543 223345678999999999999988743 344 499999998765321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHH-cCCceEEEeeCCCCceeEe
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDIL-QGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~ 338 (476)
++...|+.+|.+.+.+++.++.++ |+++++|+||.+.++. ...+..... .......+ ........
T Consensus 144 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~ 212 (256)
T 2d1y_A 144 --QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEA------VLEAIALSPDPERTRRDW---EDLHALRR 212 (256)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH------HHHHHC--------CHHH---HTTSTTSS
T ss_pred --CCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCch------hhhccccccCCHHHHHHH---HhcCCCCC
Confidence 345789999999999999988774 8999999999998762 111100000 00000000 01122345
Q ss_pred ceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccH
Q 011841 339 FTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPV 385 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~ 385 (476)
+++++|+|++++.++..+.. .+| ++|++.++..+++
T Consensus 213 ~~~~~dvA~~~~~l~s~~~~~~~G-----------~~~~v~gG~~~~~ 249 (256)
T 2d1y_A 213 LGKPEEVAEAVLFLASEKASFITG-----------AILPVDGGMTASF 249 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGBC
T ss_pred CcCHHHHHHHHHHHhCchhcCCCC-----------CEEEECCCccccc
Confidence 89999999999999876532 233 8999999876554
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-24 Score=204.78 Aligned_cols=229 Identities=13% Similarity=0.081 Sum_probs=166.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC---
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.+|+||||||+|+||++++++|+++|++|++++|..... ......... ...++.++.+|++|.++++++++..
T Consensus 6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 82 (264)
T 3i4f_A 6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTA---METMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSH 82 (264)
T ss_dssp CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHH---HHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999998854321 111111111 1347999999999999999988754
Q ss_pred --CccEEEEccccC--C----hhhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQA--G----VRYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 --~~d~Vi~~Ag~~--~----~~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.. . .+...++.+..+++|+.++.++++++ ++.+.. +||++||...++...
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~iss~~~~~~~~------- 154 (264)
T 3i4f_A 83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFG-RIINYGFQGADSAPG------- 154 (264)
T ss_dssp HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTTGGGCCC-------
T ss_pred hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCC-eEEEEeechhcccCC-------
Confidence 679999999932 1 13344566788999999999999987 555554 999999986543221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
..+...|+.+|.+.+.+++.++.+ .|+++++|+||.|+++.... ........... .....
T Consensus 155 ---~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~------------~~p~~ 217 (264)
T 3i4f_A 155 ---WIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEA--TIQEARQLKEH------------NTPIG 217 (264)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSC--CHHHHHHC--------------------
T ss_pred ---CCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchh--ccHHHHHHHhh------------cCCCC
Confidence 145678999999999999998877 58999999999999985443 22222221111 12223
Q ss_pred eceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 338 DFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
.+.+++|+|++++.++..... .+| +++++.++....
T Consensus 218 r~~~~~dva~~v~~l~s~~~~~itG-----------~~i~vdGG~~~~ 254 (264)
T 3i4f_A 218 RSGTGEDIARTISFLCEDDSDMITG-----------TIIEVTGAVDVI 254 (264)
T ss_dssp CCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESCSCCCC
T ss_pred CCcCHHHHHHHHHHHcCcccCCCCC-----------cEEEEcCceeec
Confidence 578999999999999976543 233 999999886543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-24 Score=203.05 Aligned_cols=224 Identities=14% Similarity=0.058 Sum_probs=162.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|+++++++++..
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERA----KAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIY 80 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHH----HHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHH----HHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999954211 11111111 1347899999999999999888743
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... +...++.+..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 81 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~-------- 151 (248)
T 2pnf_A 81 NLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWG-RIVNISSVVGFTGN-------- 151 (248)
T ss_dssp HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCE-EEEEECCHHHHHCC--------
T ss_pred HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc-EEEEEccHHhcCCC--------
Confidence 57999999997542 2234556789999999997777654 445554 99999997654221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.|.+++.++.++ |++++++|||.++++..... ...+...+....+. .
T Consensus 152 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~------------~ 213 (248)
T 2pnf_A 152 ----VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAVL--SEEIKQKYKEQIPL------------G 213 (248)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS--CHHHHHHHHHTCTT------------S
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhhc--cHHHHHHHHhcCCC------------C
Confidence 345689999999999999888764 79999999999999853321 11222222222211 2
Q ss_pred eceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 338 DFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+++++|+|++++.++.... ...| ++|++.++.
T Consensus 214 ~~~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gg~ 247 (248)
T 2pnf_A 214 RFGSPEEVANVVLFLCSELASYITG-----------EVIHVNGGM 247 (248)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTC
T ss_pred CccCHHHHHHHHHHHhCchhhcCCC-----------cEEEeCCCc
Confidence 47899999999999997643 2223 899998763
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-24 Score=204.25 Aligned_cols=229 Identities=12% Similarity=0.057 Sum_probs=164.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|... +.......... ...++.++.+|++|++++.++++..
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~---~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE---DEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH---HHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCCh---HHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998321 11111111111 1346889999999999999888743
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.. .+..++||++||...+..
T Consensus 82 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~---------- 151 (261)
T 1gee_A 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIP---------- 151 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCC----------
Confidence 67999999997542 223455678899999999998887643 341249999999876532
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
..+...|+.+|.+.+.+++.++.++ |+++++||||.|+++..........+...+....+ ...
T Consensus 152 --~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~------------~~~ 217 (261)
T 1gee_A 152 --WPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIP------------MGY 217 (261)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCT------------TSS
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcCC------------CCC
Confidence 1456789999999999999888765 89999999999999843210000122223322211 124
Q ss_pred ceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 339 FTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
+++++|+|++++.++..... .+| +++++.++..
T Consensus 218 ~~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gg~~ 251 (261)
T 1gee_A 218 IGEPEEIAAVAAWLASSEASYVTG-----------ITLFADGGMT 251 (261)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred CcCHHHHHHHHHHHhCccccCCCC-----------cEEEEcCCcc
Confidence 78999999999999875432 233 8999988754
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=201.72 Aligned_cols=230 Identities=12% Similarity=0.105 Sum_probs=167.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||.+++++|+++|++|++++|+.+. ......... ...++.++.+|++|+++++++++.+
T Consensus 4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (257)
T 3imf_A 4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEK----LEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDE 79 (257)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999995432 122222221 1347899999999999999988754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++. +.+...+||++||...+...
T Consensus 80 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 150 (257)
T 3imf_A 80 KFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAG--------- 150 (257)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCC---------
Confidence 67999999996432 33445667899999999999999873 22323499999998866332
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEeeCcccCCCCCCCCcH-HHHHHHHHcCCceEEEeeCCCCcee
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYGPWGRPDMAY-FFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~G~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++........ ..+...+....+ .
T Consensus 151 ---~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p------------~ 215 (257)
T 3imf_A 151 ---PGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVP------------L 215 (257)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTST------------T
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcCC------------C
Confidence 45678999999999998887754 489999999999998854321110 111122222222 2
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
..+..++|+|++++.++..... .+| +++++.++..++
T Consensus 216 ~r~~~pedvA~~v~~L~s~~~~~itG-----------~~i~vdGG~~~~ 253 (257)
T 3imf_A 216 GRLGTPEEIAGLAYYLCSDEAAYING-----------TCMTMDGGQHLH 253 (257)
T ss_dssp CSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTTSC
T ss_pred CCCcCHHHHHHHHHHHcCchhcCccC-----------CEEEECCCcccC
Confidence 3478899999999999876543 233 899999987654
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=199.71 Aligned_cols=226 Identities=14% Similarity=0.073 Sum_probs=169.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+ ....... ...++.++.+|++|+++++++++.+
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAE----KFENSMKEKGFKARGLVLNISDIESIQNFFAEIKA 78 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH----HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999543221 1111111 1347899999999999999888754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++.. .+. ++||++||...+...
T Consensus 79 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 148 (247)
T 3lyl_A 79 ENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRW-GRIISIGSVVGSAGN--------- 148 (247)
T ss_dssp TTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-eEEEEEcchhhccCC---------
Confidence 68999999998543 334556678999999999999988643 343 389999998765332
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
++...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .......+.... ....
T Consensus 149 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~------------~~~~ 211 (247)
T 3lyl_A 149 ---PGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKL--TDEQKSFIATKI------------PSGQ 211 (247)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTS--CHHHHHHHHTTS------------TTCC
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhc--cHHHHHHHhhcC------------CCCC
Confidence 456789999999999999888764 89999999999998854432 122222232222 2235
Q ss_pred ceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 339 FTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
+.+++|+|++++.++..... .+| ++|++.++..+
T Consensus 212 ~~~~~dva~~i~~l~s~~~~~~tG-----------~~i~vdgG~~~ 246 (247)
T 3lyl_A 212 IGEPKDIAAAVAFLASEEAKYITG-----------QTLHVNGGMYM 246 (247)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTSSC
T ss_pred CcCHHHHHHHHHHHhCCCcCCccC-----------CEEEECCCEec
Confidence 78999999999999876533 233 99999988654
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=203.50 Aligned_cols=227 Identities=14% Similarity=0.066 Sum_probs=162.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhcc---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV--- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~--- 191 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|+++++++++.
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 94 (273)
T 1ae1_A 19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKEL----DECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH 94 (273)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999954321 11111111 134789999999999999888753
Q ss_pred ---CCccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 192 ---VPFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 192 ---~~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
-++|+||||||.... +...++.+..+++|+.++.++++++. +.+. ++||++||.+.+...
T Consensus 95 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~-------- 165 (273)
T 1ae1_A 95 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQN-GNVIFLSSIAGFSAL-------- 165 (273)
T ss_dssp HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-EEEEEECCGGGTSCC--------
T ss_pred HcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcCHhhcCCC--------
Confidence 367999999997432 22345667789999999999999873 3444 399999999877532
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc----HHHHHHHHHcCCceEEEeeCCCC
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA----YFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
++...|+.+|.+.+.+++.++.++ |+++++|+||.|+++....... ...+...+....++
T Consensus 166 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~--------- 232 (273)
T 1ae1_A 166 ----PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPM--------- 232 (273)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTT---------
T ss_pred ----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCCC---------
Confidence 356789999999999999988775 8999999999999985321100 01122222222111
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+.+++|+|++++.++.... ..+| +++++.++..
T Consensus 233 ---~r~~~p~dvA~~v~~l~s~~~~~~tG-----------~~i~vdGG~~ 268 (273)
T 1ae1_A 233 ---GRAGKPQEVSALIAFLCFPAASYITG-----------QIIWADGGFT 268 (273)
T ss_dssp ---CSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred ---CCCcCHHHHHHHHHHHhCccccCcCC-----------CEEEECCCcc
Confidence 237889999999999886543 2233 8999988753
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=200.17 Aligned_cols=226 Identities=16% Similarity=0.048 Sum_probs=163.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ...... .... .++.++.+|++|+++++++++.+
T Consensus 10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~-~~~~-~~~~~~~~D~~d~~~v~~~~~~~~~~ 83 (263)
T 3ak4_A 10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVM----AAQAVV-AGLE-NGGFAVEVDVTKRASVDAAMQKAIDA 83 (263)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHH-HTCT-TCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHH-HHHh-cCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998432 111111 1111 26889999999999999888743
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.. .+..++||++||...+...
T Consensus 84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 153 (263)
T 3ak4_A 84 LGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA---------- 153 (263)
T ss_dssp HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCC----------
Confidence 57999999997532 223455678999999999999988754 3412499999998865321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc----H-----HHHHHHHHcCCceEEEeeC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA----Y-----FFFTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~----~-----~~~~~~~~~g~~~~~~~~~ 330 (476)
++...|+.+|.+.+.+++.++.++ |+++++||||.|+++....... . ......+....
T Consensus 154 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 223 (263)
T 3ak4_A 154 --PLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVSLT-------- 223 (263)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHHTC--------
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHhcC--------
Confidence 345789999999999999988775 8999999999999873211000 0 11111122111
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
....+++++|+|++++.++..+.. .+| ++|++.++..
T Consensus 224 ----p~~~~~~~~dvA~~v~~l~s~~~~~~tG-----------~~~~vdgG~~ 261 (263)
T 3ak4_A 224 ----PLGRIEEPEDVADVVVFLASDAARFMTG-----------QGINVTGGVR 261 (263)
T ss_dssp ----TTCSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESSSSS
T ss_pred ----CCCCCcCHHHHHHHHHHHhCccccCCCC-----------CEEEECcCEe
Confidence 123488999999999999876532 233 8999998754
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-24 Score=205.44 Aligned_cols=225 Identities=16% Similarity=0.184 Sum_probs=139.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+ ....... ....+.++.+|++|+++++++++..
T Consensus 7 ~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAE----AVAKQIVADGGTAISVAVDVSDPESAKAMADRTLA 82 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHH----HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999543221 1112111 2357889999999999999988754
Q ss_pred ---CccEEEEccccCCh-------hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-------RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-------~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|+||||||.... ....++.+..+++|+.++.++++++ ++.+. ++||++||...|
T Consensus 83 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~--------- 152 (253)
T 3qiv_A 83 EFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGG-GAIVNQSSTAAW--------- 152 (253)
T ss_dssp HHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECC-------------
T ss_pred HcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CEEEEECCcccc---------
Confidence 67999999997421 2234556789999999977666654 44554 389999999876
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..... ....+...+.++.+
T Consensus 153 ------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~~~------------ 213 (253)
T 3qiv_A 153 ------LYSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTT-TPKEMVDDIVKGLP------------ 213 (253)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC--------------------------------------
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhc-CcHHHHHHHhccCC------------
Confidence 234569999999999999999886 79999999999999854321 11122233333322
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
...+..++|+|++++.++..... .+| ++|++.++..++
T Consensus 214 ~~~~~~~~dva~~~~~l~s~~~~~~tG-----------~~~~vdgG~~~~ 252 (253)
T 3qiv_A 214 LSRMGTPDDLVGMCLFLLSDEASWITG-----------QIFNVDGGQIIR 252 (253)
T ss_dssp ------CCHHHHHHHHHHSGGGTTCCS-----------CEEEC-------
T ss_pred CCCCCCHHHHHHHHHHHcCccccCCCC-----------CEEEECCCeecC
Confidence 23456689999999999876433 233 899999887543
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=204.39 Aligned_cols=227 Identities=14% Similarity=0.036 Sum_probs=171.2
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhhccC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
..++|+||||||+|+||++++++|+++|++|++++|+.+..+. ....... ..++.++.+|++|+++++++++.+
T Consensus 38 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~----~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 113 (293)
T 3rih_A 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSS----VTAELGELGAGNVIGVRLDVSDPGSCADAARTV 113 (293)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHH----HHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH----HHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHH
Confidence 3578999999999999999999999999999999997653322 2222222 247999999999999998888754
Q ss_pred -----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCcccc-CCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVY-GLNTQVPFS 258 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vy-g~~~~~~~~ 258 (476)
++|+||||||.... ..+.++++..+++|+.++.++++++ ++.+.. +||++||...+ ..
T Consensus 114 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iV~isS~~~~~~~------- 185 (293)
T 3rih_A 114 VDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRG-RVILTSSITGPVTG------- 185 (293)
T ss_dssp HHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSC-EEEEECCSBTTTBB-------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEEeChhhccCC-------
Confidence 78999999997533 2345566789999999999999987 355554 99999997743 11
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
..+...|+.+|.+.+.+++.++.+ +|+++++|+||.|+++..... ...+...+.+..++.
T Consensus 186 -----~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~~---------- 248 (293)
T 3rih_A 186 -----YPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVDM--GEEYISGMARSIPMG---------- 248 (293)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHT--CHHHHHHHHTTSTTS----------
T ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhhc--cHHHHHHHHhcCCCC----------
Confidence 145678999999999999998877 489999999999999742211 123444455444331
Q ss_pred eEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 336 ARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
.+..++|+|++++.++.... ..+| +++++.++..+
T Consensus 249 --r~~~p~dvA~~v~fL~s~~a~~itG-----------~~i~vdGG~~~ 284 (293)
T 3rih_A 249 --MLGSPVDIGHLAAFLATDEAGYITG-----------QAIVVDGGQVL 284 (293)
T ss_dssp --SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTTC
T ss_pred --CCCCHHHHHHHHHHHhCccccCCCC-----------CEEEECCCccC
Confidence 25578999999999886543 2333 89999988754
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=199.83 Aligned_cols=181 Identities=14% Similarity=0.137 Sum_probs=143.9
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-CccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~d~ 196 (476)
+|+||||||+|+||++++++|+ +|++|++++|... .+.+|++|+++++++++.. ++|+
T Consensus 3 kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~--------------------~~~~D~~~~~~~~~~~~~~~~~d~ 61 (202)
T 3d7l_A 3 AMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG--------------------DVTVDITNIDSIKKMYEQVGKVDA 61 (202)
T ss_dssp SCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS--------------------SEECCTTCHHHHHHHHHHHCCEEE
T ss_pred CcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc--------------------ceeeecCCHHHHHHHHHHhCCCCE
Confidence 3689999999999999999999 9999999999432 4789999999999998874 5799
Q ss_pred EEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCCCCCCChHH
Q 011841 197 VLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYA 271 (476)
Q Consensus 197 Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (476)
||||||.... ..+.++.+..+++|+.++.++++++.+.-. .++||++||...+... .+...|+
T Consensus 62 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~~~------------~~~~~Y~ 129 (202)
T 3d7l_A 62 IVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPI------------VQGASAA 129 (202)
T ss_dssp EEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTSCC------------TTCHHHH
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcCCC------------CccHHHH
Confidence 9999996432 122344567789999999999999877511 1489999998765322 4557899
Q ss_pred HHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 272 ATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
.+|.+.|.+++.++.++ |++++++|||.++++.. ... +....+++++++|+|+++
T Consensus 130 ~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~-----------~~~------------~~~~~~~~~~~~dva~~~ 186 (202)
T 3d7l_A 130 MANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD-----------KLE------------PFFEGFLPVPAAKVARAF 186 (202)
T ss_dssp HHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH-----------HHG------------GGSTTCCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh-----------hhh------------hhccccCCCCHHHHHHHH
Confidence 99999999999988764 89999999999999731 010 112235689999999999
Q ss_pred HHHHh
Q 011841 350 VGALD 354 (476)
Q Consensus 350 ~~~l~ 354 (476)
+.++.
T Consensus 187 ~~~~~ 191 (202)
T 3d7l_A 187 EKSVF 191 (202)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 98883
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=201.59 Aligned_cols=224 Identities=16% Similarity=0.108 Sum_probs=167.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|.... .......... ...++.++.+|++|.++++++++.+
T Consensus 26 l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~ 102 (269)
T 4dmm_A 26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAG---AADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIE 102 (269)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChH---HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999984421 1111111111 2347899999999999999988754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+. .+||++||.+.+...
T Consensus 103 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 172 (269)
T 4dmm_A 103 RWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRS-GRIINIASVVGEMGN--------- 172 (269)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCHHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECchhhcCCC---------
Confidence 67999999998542 23455677899999999999998863 3444 399999998765322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++.... .....+....++ ..
T Consensus 173 ---~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~-----~~~~~~~~~~p~------------~r 232 (269)
T 4dmm_A 173 ---PGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE-----LAAEKLLEVIPL------------GR 232 (269)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH-----HHHHHHGGGCTT------------SS
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc-----ccHHHHHhcCCC------------CC
Confidence 35678999999999999998876 48999999999999885431 111223322222 24
Q ss_pred ceeHHHHHHHHHHHHhhcCc--CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 339 FTYIDDVVKGCVGALDTAGK--STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~--~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
+.+++|+|++++.++..+.. .+| +++++.++..+
T Consensus 233 ~~~~~dvA~~v~~l~s~~~~~~itG-----------~~i~vdGG~~~ 268 (269)
T 4dmm_A 233 YGEAAEVAGVVRFLAADPAAAYITG-----------QVINIDGGLVM 268 (269)
T ss_dssp CBCHHHHHHHHHHHHHCGGGGGCCS-----------CEEEESTTSCC
T ss_pred CCCHHHHHHHHHHHhCCcccCCCcC-----------CEEEECCCeec
Confidence 67899999999999987432 333 89999988654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-23 Score=195.67 Aligned_cols=225 Identities=17% Similarity=0.072 Sum_probs=161.7
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
....+++||||||+|+||+++++.|+++|++|++++|+.+ ........ . ...+.++.+|++|.+++.++++..
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~ 83 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEE----KLKSLGNA-L-KDNYTIEVCNLANKEECSNLISKTS 83 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH-H-CSSEEEEECCTTSHHHHHHHHHTCS
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHH-h-ccCccEEEcCCCCHHHHHHHHHhcC
Confidence 3467899999999999999999999999999999999432 11222111 1 247899999999999999999865
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... ....++.+..+++|+.++.++++++. +.+. ++||++||...+...
T Consensus 84 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~------------ 150 (249)
T 3f9i_A 84 NLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRY-GRIINISSIVGIAGN------------ 150 (249)
T ss_dssp CCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCCCC--CC------------
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cEEEEEccHHhccCC------------
Confidence 68999999997542 34567788999999999999988764 3443 399999998876432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++++||.|.++...... ......+..+. ....+.+
T Consensus 151 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~--~~~~~~~~~~~------------~~~~~~~ 216 (249)
T 3f9i_A 151 PGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKLN--EKQREAIVQKI------------PLGTYGI 216 (249)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------CC--HHHHHHHHHHC------------TTCSCBC
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCcccccC--HHHHHHHHhcC------------CCCCCcC
Confidence 45678999999999999998876 4899999999999988543211 22223332222 1235788
Q ss_pred HHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 342 IDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
++|+|++++.++..+.. .+| ++|++.++..
T Consensus 217 ~~dva~~~~~l~s~~~~~~tG-----------~~~~vdgG~~ 247 (249)
T 3f9i_A 217 PEDVAYAVAFLASNNASYITG-----------QTLHVNGGML 247 (249)
T ss_dssp HHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTSS
T ss_pred HHHHHHHHHHHcCCccCCccC-----------cEEEECCCEe
Confidence 99999999999976543 233 9999988754
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-24 Score=208.31 Aligned_cols=230 Identities=16% Similarity=0.115 Sum_probs=169.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+...+...... .....++.++.+|++|+++++++++.+
T Consensus 45 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 45 LKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYV--EKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH--HTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHH--HhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999996532111111111 112347899999999999999888754
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++...-. ..+||++||...+...
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------------ 190 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGN------------ 190 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCC------------
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCC------------
Confidence 67999999997432 124556778999999999999999876432 2489999998876432
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++....... ......+.. ......+.+
T Consensus 191 ~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~------------~~p~~r~~~ 257 (291)
T 3ijr_A 191 ETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSSFD-EKKVSQFGS------------NVPMQRPGQ 257 (291)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHHSC-HHHHHHTTT------------TSTTSSCBC
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCcccccCC-HHHHHHHHc------------cCCCCCCcC
Confidence 345789999999999999998775 8999999999999873110000 111111111 222345778
Q ss_pred HHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 342 IDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
++|+|++++.++..... .+| +++++.++..+
T Consensus 258 p~dvA~~v~~L~s~~~~~itG-----------~~i~vdGG~~~ 289 (291)
T 3ijr_A 258 PYELAPAYVYLASSDSSYVTG-----------QMIHVNGGVIV 289 (291)
T ss_dssp GGGTHHHHHHHHSGGGTTCCS-----------CEEEESSSCCC
T ss_pred HHHHHHHHHHHhCCccCCCcC-----------CEEEECCCccc
Confidence 99999999998876532 333 89999887643
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=202.94 Aligned_cols=239 Identities=13% Similarity=0.038 Sum_probs=174.4
Q ss_pred CCCCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc
Q 011841 114 RRPNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 114 ~~~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
....+|+||||||+ |+||++++++|+++|++|++++|... ..............+.++.+|++|.++++++++.
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDR----FKDRITEFAAEFGSELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchh----hHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHH
Confidence 34678999999999 99999999999999999999999632 1111111112234688999999999999998875
Q ss_pred C-----CccEEEEccccCCh---------hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCC
Q 011841 192 V-----PFTHVLHLAAQAGV---------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 192 ~-----~~d~Vi~~Ag~~~~---------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~ 256 (476)
+ ++|+||||||.... ....++.+..+++|+.++.++++++...-. ..+||++||.+.+...
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~---- 161 (271)
T 3ek2_A 86 LKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAI---- 161 (271)
T ss_dssp HHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC----
T ss_pred HHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCC----
Confidence 4 78999999997543 134556778999999999999999865421 2389999998866432
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+...+....++
T Consensus 162 --------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~--------- 224 (271)
T 3ek2_A 162 --------PNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASGIKSFGKILDFVESNSPL--------- 224 (271)
T ss_dssp --------TTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CCCHHHHHHHHHHHHHSTT---------
T ss_pred --------CCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhcccchHHHHHHHHhcCCc---------
Confidence 456789999999999999988775 899999999999988544322223344444433322
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHH
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSI 391 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~ 391 (476)
..+..++|+|++++.++.... ..+| +++++.++..+++.++++.
T Consensus 225 ---~~~~~pedva~~i~~l~s~~~~~~tG-----------~~i~vdgG~~~~~~~~~~~ 269 (271)
T 3ek2_A 225 ---KRNVTIEQVGNAGAFLLSDLASGVTA-----------EVMHVDSGFNAVVGGMAGL 269 (271)
T ss_dssp ---SSCCCHHHHHHHHHHHHSGGGTTCCS-----------EEEEESTTGGGBCCCC---
T ss_pred ---CCCCCHHHHHHHHHHHcCcccCCeee-----------eEEEECCCeeeehhhhhhc
Confidence 235789999999999987643 2333 9999999988887776543
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=200.21 Aligned_cols=223 Identities=13% Similarity=0.116 Sum_probs=153.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEe-CCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD-NFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~-R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++ |.... ......... ...++.++.+|++|+++++++++..
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTS----LDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAM 78 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSH----HHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHH----HHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999999999994 43321 111111111 1347899999999999999888743
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCcc-ccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSS-VYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~-vyg~~~~~~~~E 259 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.. .+.. +||++||.. .|+.
T Consensus 79 ~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~-------- 149 (247)
T 2hq1_A 79 DAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSG-KIINITSIAGIIGN-------- 149 (247)
T ss_dssp HHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCE-EEEEECC---------------
T ss_pred HhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcChhhccCC--------
Confidence 67999999997532 234567788999999999888887653 4544 999999975 4432
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.|.+++.++.++ |+++++++||.+.++.... ....+...+..+.+ .
T Consensus 150 -----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~------------~ 210 (247)
T 2hq1_A 150 -----AGQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTDV--LPDKVKEMYLNNIP------------L 210 (247)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--SCHHHHHHHHTTST------------T
T ss_pred -----CCCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchhh--cchHHHHHHHhhCC------------C
Confidence 345789999999999999988775 8999999999998763211 11122233333322 1
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+++++|+|++++.++..+.. ..| ++||+.++.
T Consensus 211 ~~~~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gG~ 245 (247)
T 2hq1_A 211 KRFGTPEEVANVVGFLASDDSNYITG-----------QVINIDGGL 245 (247)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTC
T ss_pred CCCCCHHHHHHHHHHHcCcccccccC-----------cEEEeCCCc
Confidence 2478999999999998876532 233 899998874
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-23 Score=201.50 Aligned_cols=232 Identities=14% Similarity=0.118 Sum_probs=164.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+....... ......++.++.+|++|+++++++++.+
T Consensus 11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVL-ETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-hhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999995432111111111 1111347899999999999999888754
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ....++.+..+++|+.++..+++++ ++.+.. +||++||...+...
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 159 (267)
T 1iy8_A 90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSG-MVVNTASVGGIRGI--------- 159 (267)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSBC---------
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEEcchhhccCC---------
Confidence 67999999997532 2234556788999999988766654 445554 99999998865321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC------CCcHHHHHHHHHcCCceEEEeeCCC
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP------DMAYFFFTKDILQGKTIDVYKTQDD 332 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++.... ......+...+....+
T Consensus 160 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p--------- 227 (267)
T 1iy8_A 160 ---GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNP--------- 227 (267)
T ss_dssp ---SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCT---------
T ss_pred ---CCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccCC---------
Confidence 345789999999999999888764 8999999999999873110 0011111112222211
Q ss_pred CceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 333 REVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 333 ~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
...+.+++|+|++++.++..+. ..+| +++++.++...+
T Consensus 228 ---~~r~~~~~dvA~~v~~l~s~~~~~~tG-----------~~i~vdGG~~~~ 266 (267)
T 1iy8_A 228 ---SKRYGEAPEIAAVVAFLLSDDASYVNA-----------TVVPIDGGQSAA 266 (267)
T ss_dssp ---TCSCBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTTTTB
T ss_pred ---CCCCcCHHHHHHHHHHHcCccccCCCC-----------CEEEECCCcccC
Confidence 1247899999999999987643 2233 899998886543
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=201.02 Aligned_cols=224 Identities=13% Similarity=0.097 Sum_probs=163.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+. ..... ..++.++.+|++|+++++++++.+
T Consensus 10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~----~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (265)
T 2o23_A 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEA----QAKKL--GNNCVFAPADVTSEKDVQTALALAKGK 83 (265)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHH----HHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHH----HHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999997653222 21211 347899999999999999988743
Q ss_pred --CccEEEEccccCChh----------hhhcChHHHHHHHHHHHHHHHHHHHhc----------CCCCeEEEecCccccC
Q 011841 193 --PFTHVLHLAAQAGVR----------YAMQNPQSYVASNIAGFVNLLEVCKSV----------NPQPSIVWASSSSVYG 250 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~~----------~~~~~~~~~~~~nv~gt~~ll~~a~~~----------~~~~~~V~~SS~~vyg 250 (476)
++|+||||||..... ...++.+..+++|+.++.++++++... +. ++||++||...+.
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~-~~iv~isS~~~~~ 162 (265)
T 2o23_A 84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQR-GVIINTASVAAFE 162 (265)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCC-EEEEEECCTHHHH
T ss_pred CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCC-cEEEEeCChhhcC
Confidence 679999999975321 234556789999999999999987653 33 3899999988764
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEE
Q 011841 251 LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVY 327 (476)
Q Consensus 251 ~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~ 327 (476)
.. .+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ...+...+....+.
T Consensus 163 ~~------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~--- 225 (265)
T 2o23_A 163 GQ------------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSL--PEKVCNFLASQVPF--- 225 (265)
T ss_dssp CC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------CHHHHTCSS---
T ss_pred CC------------CCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccccCcccccc--CHHHHHHHHHcCCC---
Confidence 32 356789999999999999888764 89999999999998743210 00111111111111
Q ss_pred eeCCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 328 KTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
...+++++|+|++++.+++... .+| +++++.++..+
T Consensus 226 --------~~~~~~~~dva~~~~~l~~~~~-~~G-----------~~i~vdgG~~~ 261 (265)
T 2o23_A 226 --------PSRLGDPAEYAHLVQAIIENPF-LNG-----------EVIRLDGAIRM 261 (265)
T ss_dssp --------SCSCBCHHHHHHHHHHHHHCTT-CCS-----------CEEEESTTCCC
T ss_pred --------cCCCCCHHHHHHHHHHHhhcCc-cCc-----------eEEEECCCEec
Confidence 0247899999999999986533 233 89999887644
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-23 Score=202.75 Aligned_cols=234 Identities=16% Similarity=0.042 Sum_probs=168.1
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
...++|+||||||+|+||++++++|+++|++|++++|+.+. ... ..... ..+++++.+|++|.++++++++..
T Consensus 12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~----~~~-~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~ 85 (291)
T 3rd5_A 12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRK----GEA-AARTM-AGQVEVRELDLQDLSSVRRFADGVS 85 (291)
T ss_dssp CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHH-HHTTS-SSEEEEEECCTTCHHHHHHHHHTCC
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHH----HHH-HHHHh-cCCeeEEEcCCCCHHHHHHHHHhcC
Confidence 34678999999999999999999999999999999994321 111 11111 347999999999999999999876
Q ss_pred CccEEEEccccCCh--hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCC-CCCCCCCCCCCCCCCh
Q 011841 193 PFTHVLHLAAQAGV--RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNT-QVPFSESHRTDQPASL 269 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~--~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~-~~~~~E~~~~~~p~~~ 269 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.....+ +||++||.+.+.... .....++.....+...
T Consensus 86 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
T 3rd5_A 86 GADVLINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSSMAHWPGRINLEDLNWRSRRYSPWLA 164 (291)
T ss_dssp CEEEEEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECCGGGTTCCCCSSCTTCSSSCCCHHHH
T ss_pred CCCEEEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeechhhccCCCCcccccccccCCCCcch
Confidence 78999999998543 2356778899999999999999999888765 999999988775432 1122222223356678
Q ss_pred HHHHHHHHHHHHHHHHHHh---C--CcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHH
Q 011841 270 YAATKKAGEEIAHTYNHIY---G--LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (476)
Q Consensus 270 Y~~sK~~~E~~~~~~~~~~---g--i~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (476)
|+.+|.+.+.+++.++.++ | +++++|+||.|.++..... ...+...+. ..+. .+-...++|
T Consensus 165 Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~--~~~~~~~~~-~~~~-----------~~~~~~~~~ 230 (291)
T 3rd5_A 165 YSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGAS--GRKLGDALM-SAAT-----------RVVATDADF 230 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC----------------------------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCcccccccc--chHHHHHHH-HHHH-----------HHHhCCHHH
Confidence 9999999999999988775 4 9999999999988753321 011111111 1111 112345899
Q ss_pred HHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCC
Q 011841 345 VVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 345 va~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
+|++++.++..+ ..+| +.+++.++
T Consensus 231 ~A~~~~~l~~~~-~~~G-----------~~~~vdgG 254 (291)
T 3rd5_A 231 GARQTLYAASQD-LPGD-----------SFVGPRFG 254 (291)
T ss_dssp HHHHHHHHHHSC-CCTT-----------CEEEETTS
T ss_pred HHHHHHHHHcCC-CCCC-----------ceeCCccc
Confidence 999999999875 3333 78887654
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-23 Score=192.89 Aligned_cols=202 Identities=13% Similarity=0.144 Sum_probs=149.0
Q ss_pred CEEEEECCCChhhHHHHHHHH-HCCCeEEEEeCCCC-CCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALK-KRGDGVLGLDNFNS-YYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~-~~G~~V~~~~R~~~-~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++||||||+|+||++++++|+ ++|++|++++|+.+ ..... . ....+++++.+|++|.+++.++++++ |+
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~----~---~~~~~~~~~~~D~~d~~~~~~~~~~~--d~ 76 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPE----I---IDHERVTVIEGSFQNPGXLEQAVTNA--EV 76 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHH----H---HTSTTEEEEECCTTCHHHHHHHHTTC--SE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhh----c---cCCCceEEEECCCCCHHHHHHHHcCC--CE
Confidence 569999999999999999999 89999999999532 21110 0 13468999999999999999999976 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCC-hHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS-LYAATKK 275 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~-~Y~~sK~ 275 (476)
||||||.. |+. +.+++++|++.+.+ +||++||.++|+..... ..+.. ..... .|+.+|.
T Consensus 77 vv~~ag~~---------------n~~-~~~~~~~~~~~~~~-~iv~iSs~~~~~~~~~~-~~~~~--~~~~~~~y~~~K~ 136 (221)
T 3r6d_A 77 VFVGAMES---------------GSD-MASIVKALSRXNIR-RVIGVSMAGLSGEFPVA-LEKWT--FDNLPISYVQGER 136 (221)
T ss_dssp EEESCCCC---------------HHH-HHHHHHHHHHTTCC-EEEEEEETTTTSCSCHH-HHHHH--HHTSCHHHHHHHH
T ss_pred EEEcCCCC---------------Chh-HHHHHHHHHhcCCC-eEEEEeeceecCCCCcc-ccccc--ccccccHHHHHHH
Confidence 99999862 444 89999999999886 99999999998743210 00000 01223 7999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHH--
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL-- 353 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l-- 353 (476)
++|.++++ .|+++++||||.++++..... ..... .+......+++.+|+|++++.++
T Consensus 137 ~~e~~~~~----~~i~~~~vrpg~v~~~~~~~~---------------~~~~~--~~~~~~~~~~~~~dvA~~~~~l~~~ 195 (221)
T 3r6d_A 137 QARNVLRE----SNLNYTILRLTWLYNDPEXTD---------------YELIP--EGAQFNDAQVSREAVVKAIFDILHA 195 (221)
T ss_dssp HHHHHHHH----SCSEEEEEEECEEECCTTCCC---------------CEEEC--TTSCCCCCEEEHHHHHHHHHHHHTC
T ss_pred HHHHHHHh----CCCCEEEEechhhcCCCCCcc---------------eeecc--CCccCCCceeeHHHHHHHHHHHHHh
Confidence 99998875 699999999999999732211 11110 11111224899999999999999
Q ss_pred hhcCcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 354 DTAGKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 354 ~~~~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.++....+ +.+.+.++.
T Consensus 196 ~~~~~~~~-----------~~~~i~~~~ 212 (221)
T 3r6d_A 196 ADETPFHR-----------TSIGVGEPG 212 (221)
T ss_dssp SCCGGGTT-----------EEEEEECTT
T ss_pred cChhhhhc-----------ceeeecCCC
Confidence 77654332 788887654
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=203.28 Aligned_cols=228 Identities=16% Similarity=0.086 Sum_probs=167.4
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..++|+||||||+|+||++++++|+++|++|++++|.. .......... ...++.++.+|++|.++++++.+..
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-----~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (273)
T 3uf0_A 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD-----GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELA 102 (273)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-----HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH-----HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999742 1222222221 2347899999999999988875432
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++ ++.+.. +||++||...+.+.
T Consensus 103 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~IV~isS~~~~~~~--------- 172 (273)
T 3uf0_A 103 ATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSG-RIVTIASMLSFQGG--------- 172 (273)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC---------
T ss_pred hcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcchHhcCCC---------
Confidence 67999999998543 2244566789999999999999976 344543 99999998876432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|+++..............+....++ ..
T Consensus 173 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------~r 237 (273)
T 3uf0_A 173 ---RNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALRADDERAAEITARIPA------------GR 237 (273)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHSTT------------SS
T ss_pred ---CCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCCC------------CC
Confidence 45678999999999999999877 5899999999999987432100001222223322222 24
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
+..++|+|++++.++.... ..+| +++++.++..+
T Consensus 238 ~~~pedva~~v~~L~s~~a~~itG-----------~~i~vdGG~~~ 272 (273)
T 3uf0_A 238 WATPEDMVGPAVFLASDAASYVHG-----------QVLAVDGGWLA 272 (273)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCS-----------CEEEESTTGGG
T ss_pred CCCHHHHHHHHHHHhCchhcCCcC-----------CEEEECcCccC
Confidence 6788999999999887643 3333 89999988654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=201.13 Aligned_cols=226 Identities=15% Similarity=0.091 Sum_probs=163.5
Q ss_pred CCCCEEEEECCCC-hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAG-FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG-~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.++|+||||||+| .||++++++|+++|++|++++|+.+... ....... ...++.++.+|++|.++++++++.+
T Consensus 20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~----~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (266)
T 3o38_A 20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLG----ETRDQLADLGLGRVEAVVCDVTSTEAVDALITQT 95 (266)
T ss_dssp TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHH----HHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHH----HHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHH
Confidence 5789999999997 6999999999999999999999543222 2222221 2347999999999999999988754
Q ss_pred -----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||.... ....++.+..+++|+.++.++++++... +...+||++||...+...
T Consensus 96 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------- 168 (266)
T 3o38_A 96 VEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQ------- 168 (266)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCC-------
T ss_pred HHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCC-------
Confidence 78999999997443 2344566788999999999999987543 223489999998765322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++...... ...+...+.. ....
T Consensus 169 -----~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~-~~~~~~~~~~------------~~~~ 230 (266)
T 3o38_A 169 -----HSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKTS-SSELLDRLAS------------DEAF 230 (266)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------------------------------CCTT
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhccC-cHHHHHHHHh------------cCCc
Confidence 45678999999999999998877 5899999999999987432110 0111111111 2223
Q ss_pred EeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+.+++|+|++++.++.... ..+| +++++.++.
T Consensus 231 ~r~~~~~dva~~i~~l~s~~~~~~tG-----------~~i~vdgG~ 265 (266)
T 3o38_A 231 GRAAEPWEVAATIAFLASDYSSYMTG-----------EVVSVSSQR 265 (266)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESSCC
T ss_pred CCCCCHHHHHHHHHHHcCccccCccC-----------CEEEEcCCc
Confidence 457899999999999887643 2333 899998874
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-24 Score=199.06 Aligned_cols=193 Identities=19% Similarity=0.146 Sum_probs=149.4
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc-CCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV-VPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~-~~~d~V 197 (476)
|+||||||+|+||++++++|+++ +|++++|+.+ ........ .. . +++.+|++|++++.++++. -++|+|
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~----~~~~~~~~-~~--~-~~~~~D~~~~~~~~~~~~~~~~id~v 70 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAG----ALAELARE-VG--A-RALPADLADELEAKALLEEAGPLDLL 70 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHH----HHHHHHHH-HT--C-EECCCCTTSHHHHHHHHHHHCSEEEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHH----HHHHHHHh-cc--C-cEEEeeCCCHHHHHHHHHhcCCCCEE
Confidence 68999999999999999999998 9999998432 11111111 11 2 8889999999999999872 145999
Q ss_pred EEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 198 LHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 198 i~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
|||||.... ..+.++.+..+++|+.++.++++++++.+.. +||++||...|.+. .+...|+.+
T Consensus 71 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~sS~~~~~~~------------~~~~~Y~~s 137 (207)
T 2yut_A 71 VHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGA-RAVFFGAYPRYVQV------------PGFAAYAAA 137 (207)
T ss_dssp EECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEE-EEEEECCCHHHHSS------------TTBHHHHHH
T ss_pred EECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCc-EEEEEcChhhccCC------------CCcchHHHH
Confidence 999997543 2345667789999999999999999766654 99999999887432 456789999
Q ss_pred HHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350 (476)
Q Consensus 274 K~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~ 350 (476)
|.+.|.+++.++.+ +|++++++|||.++++... +.+.....+++++|+|++++
T Consensus 138 K~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~------------------------~~~~~~~~~~~~~dva~~~~ 193 (207)
T 2yut_A 138 KGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA------------------------PLGGPPKGALSPEEAARKVL 193 (207)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG------------------------GGTSCCTTCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc------------------------ccCCCCCCCCCHHHHHHHHH
Confidence 99999999998877 5899999999999987310 01223357899999999999
Q ss_pred HHHhhcCc
Q 011841 351 GALDTAGK 358 (476)
Q Consensus 351 ~~l~~~~~ 358 (476)
.+++++..
T Consensus 194 ~~~~~~~~ 201 (207)
T 2yut_A 194 EGLFREPV 201 (207)
T ss_dssp HHHC--CC
T ss_pred HHHhCCCC
Confidence 99987654
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=204.89 Aligned_cols=229 Identities=15% Similarity=0.050 Sum_probs=165.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ........ ..++.++.+|++|+++++++++.+
T Consensus 27 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (277)
T 3gvc_A 27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDA----ADAAATKI--GCGAAACRVDVSDEQQIIAMVDACVAA 100 (277)
T ss_dssp CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHHH--CSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHc--CCcceEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999985431 11111111 457899999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++.. .+. ++||++||...+...
T Consensus 101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~Iv~isS~~~~~~~---------- 169 (277)
T 3gvc_A 101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGG-GAIVNLSSLAGQVAV---------- 169 (277)
T ss_dssp HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhccCC----------
Confidence 68999999998543 334566778999999999999988643 443 489999998765322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCC---Ccee
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDD---REVA 336 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~ 336 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|++|.. +.......-........ ....
T Consensus 170 --~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 237 (277)
T 3gvc_A 170 --GGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQ----------QTAMAMFDGALGAGGARSMIARLQ 237 (277)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH----------HHHHTCC------CCHHHHHHHHH
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchH----------HHhhhcchhhHHHHhhhhhhhccc
Confidence 45678999999999999988876 489999999999998721 11111000000000000 0112
Q ss_pred EeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 337 RDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
..+.+++|+|++++.++.... ..+| +++++.++...+
T Consensus 238 ~r~~~pedvA~~v~~L~s~~a~~itG-----------~~i~vdGG~~~~ 275 (277)
T 3gvc_A 238 GRMAAPEEMAGIVVFLLSDDASMITG-----------TTQIADGGTIAA 275 (277)
T ss_dssp SSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGS
T ss_pred cCCCCHHHHHHHHHHHcCCccCCccC-----------cEEEECCcchhc
Confidence 347889999999999987643 2333 899999886543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=199.79 Aligned_cols=231 Identities=16% Similarity=0.081 Sum_probs=172.5
Q ss_pred CCCCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 115 RPNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
..++|+||||||+| +||++++++|+++|++|++++|+.+. .............+.++.+|++|.++++++++.+
T Consensus 27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 102 (296)
T 3k31_A 27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETF----KKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVL 102 (296)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG----HHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHH
T ss_pred ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHH----HHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH
Confidence 35789999999997 99999999999999999999996431 1111111112235789999999999999988754
Q ss_pred -----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++...-. ..+||++||.+.+...
T Consensus 103 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~------ 176 (296)
T 3k31_A 103 AEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVV------ 176 (296)
T ss_dssp HHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCC------
T ss_pred HHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCC------
Confidence 78999999998642 334556778999999999999999876432 2489999998865322
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+...+....++
T Consensus 177 ------~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----------- 239 (296)
T 3k31_A 177 ------PHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPL----------- 239 (296)
T ss_dssp ------TTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTT-----------
T ss_pred ------CCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCCC-----------
Confidence 456789999999999999988775 899999999999998654322222333333333222
Q ss_pred eEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 336 ARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
..+..++|+|++++.++.... ..+| +++++.++..+.
T Consensus 240 -~r~~~pedvA~~v~fL~s~~a~~itG-----------~~i~vdGG~~~~ 277 (296)
T 3k31_A 240 -RRNTTLDDVGGAALYLLSDLGRGTTG-----------ETVHVDCGYHVV 277 (296)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGC
T ss_pred -CCCCCHHHHHHHHHHHcCCccCCccC-----------CEEEECCCcccc
Confidence 235678999999999997643 2333 899999986543
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=201.68 Aligned_cols=235 Identities=15% Similarity=0.117 Sum_probs=169.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.....+........ ...++.++.+|++|.++++++++.+
T Consensus 12 ~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 89 (265)
T 1h5q_A 12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE--FGVKTKAYQCDVSNTDIVTKTIQQIDAD 89 (265)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH--HTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHh--cCCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999655332222222111 1347899999999999998888753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++.++++++... +..++||++||...+...... .++
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~----~~~ 165 (265)
T 1h5q_A 90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS----LNG 165 (265)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE----TTE
T ss_pred cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc----ccc
Confidence 47999999997542 2234556778999999999999987543 322489999998765432110 011
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
..+...|+.+|.+.|.+++.++.++ |+++++||||.|+++..... ...+...+....++ ..+
T Consensus 166 -~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~------------~~~ 230 (265)
T 1h5q_A 166 -SLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM--DKKIRDHQASNIPL------------NRF 230 (265)
T ss_dssp -ECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS--CHHHHHHHHHTCTT------------SSC
T ss_pred -cccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc--chhHHHHHHhcCcc------------cCC
Confidence 1456789999999999999988764 89999999999999853321 12222222222221 237
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
++++|+|++++.++..+.. .+| ++|++.++..
T Consensus 231 ~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gG~~ 263 (265)
T 1h5q_A 231 AQPEEMTGQAILLLSDHATYMTG-----------GEYFIDGGQL 263 (265)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCS-----------CEEEECTTGG
T ss_pred CCHHHHHHHHHhhccCchhcCcC-----------cEEEecCCEe
Confidence 8899999999999976532 233 8999998753
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-23 Score=196.23 Aligned_cols=224 Identities=16% Similarity=0.140 Sum_probs=163.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+ +. ...... ...++.++.+|++|+++++++++.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~----~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 75 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--AP----ALAEIARHGVKAVHHPADLSDVAQIEALFALAER 75 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HH----HHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HH----HHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999654 11 111111 1346888999999999999988743
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ....++.+..+++|+.++.++++++ ++.+.. +||++||.+.+...
T Consensus 76 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 145 (255)
T 2q2v_A 76 EFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWG-RIINIASVHGLVGS--------- 145 (255)
T ss_dssp HHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCGGGTSCC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEcCchhccCC---------
Confidence 57999999997532 2234556789999999877776654 555554 99999998876432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcH---HHH---H----HHHHcCCceEEEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAY---FFF---T----KDILQGKTIDVYK 328 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~---~~~---~----~~~~~g~~~~~~~ 328 (476)
.+...|+.+|.+.+.+.+.++.++ |+++++||||.|+++.... .. ... . ..+...
T Consensus 146 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~------- 213 (255)
T 2q2v_A 146 ---TGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQK--QIDDRAANGGDPLQAQHDLLAE------- 213 (255)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHH--HHHHHHHHTCCHHHHHHHHHTT-------
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhh--hcccccccccchHHHHHHHHhc-------
Confidence 345789999999999999998774 7999999999999873211 00 000 0 111011
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
......+++++|+|++++.++..+.. .+| ++|++.++..
T Consensus 214 ----~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG-----------~~~~vdgG~~ 253 (255)
T 2q2v_A 214 ----KQPSLAFVTPEHLGELVLFLCSEAGSQVRG-----------AAWNVDGGWL 253 (255)
T ss_dssp ----TCTTCCCBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTGG
T ss_pred ----cCCCCCCcCHHHHHHHHHHHhCCccCCCCC-----------CEEEECCCcc
Confidence 11223589999999999998876432 233 8999988753
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-23 Score=200.00 Aligned_cols=220 Identities=12% Similarity=0.039 Sum_probs=166.0
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
...++|+||||||+|+||++++++|+++|++|++++|+.... ...+..+.+|++|+++++++++.+
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~ 76 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD-------------VNVSDHFKIDVTNEEEVKEAVEKTT 76 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C-------------TTSSEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc-------------cCceeEEEecCCCHHHHHHHHHHHH
Confidence 346889999999999999999999999999999999965422 125678899999999999988754
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.. .+. ++||++||...|...
T Consensus 77 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 147 (269)
T 3vtz_A 77 KKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGH-GSIINIASVQSYAAT-------- 147 (269)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSBC--------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEECchhhccCC--------
Confidence 68999999997543 223345567899999999999987643 444 399999999887542
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCC---------CCCcHHHHHHHHHcCCceEEEee
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGR---------PDMAYFFFTKDILQGKTIDVYKT 329 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~---------~~~~~~~~~~~~~~g~~~~~~~~ 329 (476)
.+...|+.+|.+.+.+++.++.++ ++++++|+||.|.++... ...........+....+
T Consensus 148 ----~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------ 217 (269)
T 3vtz_A 148 ----KNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEEWGRQHP------ 217 (269)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHHHHHHST------
T ss_pred ----CCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHHHHhcCC------
Confidence 456789999999999999999887 799999999999987311 00111222222222222
Q ss_pred CCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 330 QDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
...+.+++|+|++++.++..... .+| +++++.++..
T Consensus 218 ------~~r~~~pedvA~~v~~L~s~~~~~itG-----------~~i~vdGG~~ 254 (269)
T 3vtz_A 218 ------MGRIGRPEEVAEVVAFLASDRSSFITG-----------ACLTVDGGLL 254 (269)
T ss_dssp ------TSSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred ------CCCCcCHHHHHHHHHHHhCCccCCCcC-----------cEEEECCCcc
Confidence 23477899999999998876533 333 8999998754
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-23 Score=201.20 Aligned_cols=225 Identities=11% Similarity=0.018 Sum_probs=164.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC-CCCCCCchHHHHHHhhhc--CCceEEEEeecCCH----HHHHHh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN-FNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDA----PLLTKL 188 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R-~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~----~~l~~~ 188 (476)
.++|+||||||+|+||+++++.|+++|++|++++| +.+. .......... ..++.++.+|++|. ++++++
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 84 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA----AQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDI 84 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH----HHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHH----HHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHH
Confidence 45789999999999999999999999999999998 4321 1111111111 34789999999999 888888
Q ss_pred hccC-----CccEEEEccccCCh----hhhh-----------cChHHHHHHHHHHHHHHHHHHHhcCC--C------CeE
Q 011841 189 FDVV-----PFTHVLHLAAQAGV----RYAM-----------QNPQSYVASNIAGFVNLLEVCKSVNP--Q------PSI 240 (476)
Q Consensus 189 ~~~~-----~~d~Vi~~Ag~~~~----~~~~-----------~~~~~~~~~nv~gt~~ll~~a~~~~~--~------~~~ 240 (476)
++.+ ++|+||||||.... .... ++.+..+++|+.++.++++++..... . ++|
T Consensus 85 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~i 164 (276)
T 1mxh_A 85 IDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSV 164 (276)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEE
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEE
Confidence 8743 67999999997432 1222 45567899999999999999876421 1 489
Q ss_pred EEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHH
Q 011841 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKD 317 (476)
Q Consensus 241 V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~ 317 (476)
|++||...+... .+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++ .. ....+...
T Consensus 165 v~isS~~~~~~~------------~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~PG~v~t~-~~---~~~~~~~~ 228 (276)
T 1mxh_A 165 VNLCDAMTDLPL------------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLP-PA---MPQETQEE 228 (276)
T ss_dssp EEECCGGGGSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCC-SS---SCHHHHHH
T ss_pred EEECchhhcCCC------------CCCeehHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCC-cc---CCHHHHHH
Confidence 999998876432 456789999999999999988775 899999999999998 22 11233333
Q ss_pred HHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 318 ILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
+....++ + +++.+++|+|++++.++..... .+| +++++.++..
T Consensus 229 ~~~~~p~--------~---r~~~~~~dva~~v~~l~s~~~~~~tG-----------~~~~vdgG~~ 272 (276)
T 1mxh_A 229 YRRKVPL--------G---QSEASAAQIADAIAFLVSKDAGYITG-----------TTLKVDGGLI 272 (276)
T ss_dssp HHTTCTT--------T---SCCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred HHhcCCC--------C---CCCCCHHHHHHHHHHHhCccccCccC-----------cEEEECCchh
Confidence 4333221 1 1278999999999999875432 233 8999988753
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-24 Score=207.29 Aligned_cols=224 Identities=16% Similarity=0.088 Sum_probs=163.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|+++++++++.+
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 95 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGL----RTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVE 95 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999954321 11111111 1346889999999999998888743
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCccccCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV------NPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~------~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||.... ....++.+..+++|+.++.++++++... +. ++||++||.+.+.+.
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~------- 167 (277)
T 2rhc_B 96 RYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT-GRIVNIASTGGKQGV------- 167 (277)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTE-EEEEEECCGGGTSCC-------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCC-eEEEEECccccccCC-------
Confidence 57999999997432 2234456789999999999999987654 43 399999998765321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcH-----------HHHHHHHHcCCceE
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAY-----------FFFTKDILQGKTID 325 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~-----------~~~~~~~~~g~~~~ 325 (476)
.+...|+.+|.+.+.+++.++.++ |+++++||||.|+++.... .. ......+...
T Consensus 168 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---- 236 (277)
T 2rhc_B 168 -----VHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAAS--VREHYSDIWEVSTEEAFDRITAR---- 236 (277)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHH--HHHHHHHHHTCCHHHHHHHHHHH----
T ss_pred -----CCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhh--hhhhcccccccchHHHHHHHHhc----
Confidence 355789999999999999988774 7999999999999873210 00 0111111111
Q ss_pred EEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 326 VYKTQDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.....+++++|+|++++.++..+.. .+| +++++.++.
T Consensus 237 --------~p~~r~~~~~dvA~~v~~l~s~~~~~~tG-----------~~~~vdGG~ 274 (277)
T 2rhc_B 237 --------VPIGRYVQPSEVAEMVAYLIGPGAAAVTA-----------QALNVCGGL 274 (277)
T ss_dssp --------STTSSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTC
T ss_pred --------CCCCCCcCHHHHHHHHHHHhCchhcCCCC-----------cEEEECCCc
Confidence 1123488999999999999876532 233 899998874
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=200.37 Aligned_cols=222 Identities=15% Similarity=0.051 Sum_probs=161.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEE-eCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC---
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~-~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
+|+||||||+|+||++++++|+++|++|+++ +|+.+. ......... ...++.++.+|++|+++++++++..
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKA----AEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDA 76 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH----HHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH----HHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999995 664321 111111111 1347889999999999999888743
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++.++++++.+ .+. ++||++||...+.+.
T Consensus 77 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS~~~~~~~---------- 145 (244)
T 1edo_A 77 WGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIASVVGLIGN---------- 145 (244)
T ss_dssp SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHCC----------
T ss_pred cCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-CEEEEECChhhcCCC----------
Confidence 67999999997542 233455677899999999999988764 344 399999998654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.++ |++++++|||.++++..... ...+...+....+. ..+
T Consensus 146 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~------------~~~ 209 (244)
T 1edo_A 146 --IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAKL--GEDMEKKILGTIPL------------GRT 209 (244)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT--CHHHHHHHHTSCTT------------CSC
T ss_pred --CCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhhc--ChHHHHHHhhcCCC------------CCC
Confidence 345789999999999999888764 89999999999998742211 11222333322211 247
Q ss_pred eeHHHHHHHHHHHHhhcCc--CCCCCCCCCCCCCceEEEEcCCC
Q 011841 340 TYIDDVVKGCVGALDTAGK--STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~--~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
++++|+|++++.++..+.. .+| ++|++.++.
T Consensus 210 ~~~~dva~~~~~l~~~~~~~~~~G-----------~~~~v~gG~ 242 (244)
T 1edo_A 210 GQPENVAGLVEFLALSPAASYITG-----------QAFTIDGGI 242 (244)
T ss_dssp BCHHHHHHHHHHHHHCSGGGGCCS-----------CEEEESTTT
T ss_pred CCHHHHHHHHHHHhCCCccCCcCC-----------CEEEeCCCc
Confidence 8999999999999854432 223 899998874
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=203.84 Aligned_cols=231 Identities=14% Similarity=0.063 Sum_probs=168.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||+++++.|+++|++|++++|+.+..++....... ....++.++.+|++|+++++++++.+
T Consensus 18 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 95 (266)
T 4egf_A 18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGE--QFGTDVHTVAIDLAEPDAPAELARRAAEA 95 (266)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999954322221111111 12457999999999999998888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++.++++++.. .+...+||++||...+...
T Consensus 96 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 165 (266)
T 4egf_A 96 FGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPL---------- 165 (266)
T ss_dssp HTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCC----------
Confidence 67999999998542 233455677899999999999888643 3323489999998876422
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..............+....++ ..+
T Consensus 166 --~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------~r~ 231 (266)
T 4egf_A 166 --PDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPL------------GRF 231 (266)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTCTT------------SSC
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcCCC------------CCC
Confidence 456789999999999999988774 899999999999887321000001222333333322 236
Q ss_pred eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 340 TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..++|+|++++.++.... ..+| +++++.++..+
T Consensus 232 ~~p~dva~~v~~L~s~~~~~itG-----------~~i~vdGG~~~ 265 (266)
T 4egf_A 232 AVPHEVSDAVVWLASDAASMING-----------VDIPVDGGYTM 265 (266)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGG
T ss_pred cCHHHHHHHHHHHhCchhcCccC-----------cEEEECCCccC
Confidence 789999999999887643 3333 89999887643
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=202.92 Aligned_cols=226 Identities=12% Similarity=0.113 Sum_probs=167.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+ ....... ...++.++.+|++|+++++++++.+
T Consensus 9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 84 (264)
T 3ucx_A 9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLE----DVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMK 84 (264)
T ss_dssp TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHH----HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHH----HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999543221 1111111 2357999999999999999888754
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+ .+||++||...+...
T Consensus 85 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~-------- 154 (264)
T 3ucx_A 85 AYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNSMVVRHSQ-------- 154 (264)
T ss_dssp HTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECCGGGGCCC--------
T ss_pred HcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECcchhccCC--------
Confidence 68999999987422 33445667889999999999998864 233 499999998876332
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCC---------CcHHHHHHHHHcCCceEEEe
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPD---------MAYFFFTKDILQGKTIDVYK 328 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~---------~~~~~~~~~~~~g~~~~~~~ 328 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|+++..... .....+...+..+.+
T Consensus 155 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----- 225 (264)
T 3ucx_A 155 ----AKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAGSD----- 225 (264)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSS-----
T ss_pred ----CccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhccCC-----
Confidence 45678999999999999998877 589999999999998732110 011222333333322
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
...+.+++|+|++++.++.... ..+| +++++.++..
T Consensus 226 -------~~r~~~p~dvA~~v~~L~s~~~~~itG-----------~~i~vdGG~~ 262 (264)
T 3ucx_A 226 -------LKRLPTEDEVASAILFMASDLASGITG-----------QALDVNCGEY 262 (264)
T ss_dssp -------SSSCCBHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTSS
T ss_pred -------cccCCCHHHHHHHHHHHcCccccCCCC-----------CEEEECCCcc
Confidence 2347889999999999886543 2333 8999988764
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=205.44 Aligned_cols=228 Identities=15% Similarity=0.071 Sum_probs=165.0
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.+..+|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|.++++++++.+
T Consensus 20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 95 (279)
T 3sju_A 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNV----SAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAA 95 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 345778999999999999999999999999999999954321 11222211 1357999999999999999888754
Q ss_pred -----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh------cCCCCeEEEecCccccCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS------VNPQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~------~~~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
++|+||||||.... ....++.+..+++|+.++.++++++.. .+. ++||++||...+...
T Consensus 96 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~-g~iV~isS~~~~~~~----- 169 (279)
T 3sju_A 96 VERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGW-GRIVNIASTGGKQGV----- 169 (279)
T ss_dssp HHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTC-EEEEEECCGGGTSCC-----
T ss_pred HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCC-cEEEEECChhhccCC-----
Confidence 68999999997542 233455667899999999999998754 444 399999998865322
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCC---------CCcHHHHHHHHHcCCceE
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRP---------DMAYFFFTKDILQGKTID 325 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~---------~~~~~~~~~~~~~g~~~~ 325 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++.... ......+...+....++
T Consensus 170 -------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~- 241 (279)
T 3sju_A 170 -------MYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNAKIPL- 241 (279)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHTTCTT-
T ss_pred -------CCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHhcCCC-
Confidence 45678999999999999998877 48999999999998862110 00112233333333222
Q ss_pred EEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 326 VYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++.... ..+| +++++.++.
T Consensus 242 -----------~r~~~pedvA~~v~~L~s~~a~~itG-----------~~i~vdGG~ 276 (279)
T 3sju_A 242 -----------GRYSTPEEVAGLVGYLVTDAAASITA-----------QALNVCGGL 276 (279)
T ss_dssp -----------SSCBCHHHHHHHHHHHTSSGGGGCCS-----------CEEEESTTC
T ss_pred -----------CCCCCHHHHHHHHHHHhCccccCcCC-----------cEEEECCCc
Confidence 346789999999999886543 2333 899998875
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-23 Score=200.37 Aligned_cols=228 Identities=12% Similarity=0.060 Sum_probs=168.2
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..+|+||||||+ |+||+++++.|+++|++|++++|+.+ ..+........ ..++.++.+|++|+++++++++.+
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~---~~~~~~~~~D~~~~~~v~~~~~~~~ 79 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQE---LNSPYVYELDVSKEEHFKSLYNSVK 79 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHH---TTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHh---cCCcEEEEcCCCCHHHHHHHHHHHH
Confidence 467899999999 99999999999999999999999764 22222222221 124789999999999999888754
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++...-. .++||++||.+.+...
T Consensus 80 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------- 152 (275)
T 2pd4_A 80 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM------- 152 (275)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC-------
T ss_pred HHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCC-------
Confidence 67999999997543 334456678999999999999999876511 1389999997765321
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+...+....++
T Consensus 153 -----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 215 (275)
T 2pd4_A 153 -----AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPL------------ 215 (275)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT------------
T ss_pred -----CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCCc------------
Confidence 345689999999999999988776 899999999999998533211122333333322222
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+.+++|+|++++.++..... .+| +++++.++..
T Consensus 216 ~~~~~p~dva~~~~~l~s~~~~~~tG-----------~~~~vdgg~~ 251 (275)
T 2pd4_A 216 RKNVSLEEVGNAGMYLLSSLSSGVSG-----------EVHFVDAGYH 251 (275)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred CCCCCHHHHHHHHHHHhCccccCCCC-----------CEEEECCCcc
Confidence 1256889999999999865432 233 8899988753
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-23 Score=200.35 Aligned_cols=235 Identities=14% Similarity=0.105 Sum_probs=161.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+|+||+++++.|+++|++|++++|+.+. ........... ..++.++.+|++|+++++++++.+
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 78 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAA---EIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHH---HHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcch---HHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999999999986532 01211111111 347889999999999999888743
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+. ++||++||...+...
T Consensus 79 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 149 (260)
T 1x1t_A 79 RQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGF-GRIINIASAHGLVAS-------- 149 (260)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC--------
T ss_pred HhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEECcHHhCcCC--------
Confidence 67999999997542 23445667899999999999988874 3444 399999998876432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCc-eEEEeeC-CCCce
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKT-IDVYKTQ-DDREV 335 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~-~~~~~~~-~~~~~ 335 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ....... .+.. ....... .....
T Consensus 150 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~p 221 (260)
T 1x1t_A 150 ----ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQ--ISALAEK--NGVDQETAARELLSEKQP 221 (260)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC----------------------------CHHHHCT
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHh--hhhhccc--cCCchHHHHHHHhhccCC
Confidence 356789999999999999988775 79999999999999853211 0000000 0000 0000000 00011
Q ss_pred eEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
...+.+++|+|++++.++.... ..+| +++++.++.
T Consensus 222 ~~~~~~p~dva~~~~~l~s~~~~~~tG-----------~~~~vdgG~ 257 (260)
T 1x1t_A 222 SLQFVTPEQLGGTAVFLASDAAAQITG-----------TTVSVDGGW 257 (260)
T ss_dssp TCCCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred CCCCcCHHHHHHHHHHHhChhhcCCCC-----------CEEEECCCc
Confidence 2357899999999999987543 2233 899998874
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=196.73 Aligned_cols=202 Identities=12% Similarity=0.085 Sum_probs=142.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.+|+||||||+|+||++|+++|+++| ++|++++|+.+.... ....+++++.+|++|++++.++++++ |
T Consensus 22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~--D 90 (236)
T 3qvo_A 22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK---------PYPTNSQIIMGDVLNHAALKQAMQGQ--D 90 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS---------SCCTTEEEEECCTTCHHHHHHHHTTC--S
T ss_pred cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc---------cccCCcEEEEecCCCHHHHHHHhcCC--C
Confidence 45789999999999999999999999 899999996543322 12348999999999999999999987 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCC--CCCCCCCCCCCChHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVP--FSESHRTDQPASLYAAT 273 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~--~~E~~~~~~p~~~Y~~s 273 (476)
+|||||+.... ...+.+++++|++.+++ +||++||.++|+...... ..+.... .+...|.
T Consensus 91 ~vv~~a~~~~~--------------~~~~~~~~~~~~~~~~~-~iV~iSS~~~~~~~~~~~~~~~~~~~~-~~~~~~~-- 152 (236)
T 3qvo_A 91 IVYANLTGEDL--------------DIQANSVIAAMKACDVK-RLIFVLSLGIYDEVPGKFVEWNNAVIG-EPLKPFR-- 152 (236)
T ss_dssp EEEEECCSTTH--------------HHHHHHHHHHHHHTTCC-EEEEECCCCC----------------C-GGGHHHH--
T ss_pred EEEEcCCCCch--------------hHHHHHHHHHHHHcCCC-EEEEEecceecCCCCcccccchhhccc-chHHHHH--
Confidence 99999986321 13467899999999986 999999999998654322 2222211 2233343
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL 353 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l 353 (476)
.+|..++ ..|+++++||||.++++.... ..... .+......+++++|+|++++.++
T Consensus 153 --~~~~~l~----~~gi~~~~vrPg~i~~~~~~~----------------~~~~~--~~~~~~~~~i~~~DvA~~i~~ll 208 (236)
T 3qvo_A 153 --RAADAIE----ASGLEYTILRPAWLTDEDIID----------------YELTS--RNEPFKGTIVSRKSVAALITDII 208 (236)
T ss_dssp --HHHHHHH----TSCSEEEEEEECEEECCSCCC----------------CEEEC--TTSCCSCSEEEHHHHHHHHHHHH
T ss_pred --HHHHHHH----HCCCCEEEEeCCcccCCCCcc----------------eEEec--cCCCCCCcEECHHHHHHHHHHHH
Confidence 4444443 469999999999999874321 01110 11111236899999999999999
Q ss_pred hhcCcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 354 DTAGKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 354 ~~~~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.++....+ ++|+++++..
T Consensus 209 ~~~~~~~g-----------~~~~i~~~~~ 226 (236)
T 3qvo_A 209 DKPEKHIG-----------ENIGINQPGT 226 (236)
T ss_dssp HSTTTTTT-----------EEEEEECSSC
T ss_pred cCcccccC-----------eeEEecCCCC
Confidence 98774433 9999998753
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=200.98 Aligned_cols=222 Identities=14% Similarity=0.064 Sum_probs=158.3
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEE-eCCCCCCCchHHHHHHhhh-cCCceEE-EEeecCCHHHHHHhhccC--
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLL-QKHQVFI-VEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~-~R~~~~~~~~~~~~~~~~~-~~~~v~~-~~~Dl~d~~~l~~~~~~~-- 192 (476)
+|+||||||+|+||++++++|+++|++|+++ +|+.+. ......... ...++.. +.+|++|.++++++++..
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREK----AEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAE 76 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHH----HHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH----HHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999998 674321 111111111 1235666 899999999998887632
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ....++.+..+++|+.++.+++++ +++.+.. +||++||...+.+.
T Consensus 77 ~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~--------- 146 (245)
T 2ph3_A 77 VLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFG-RIVNITSVVGILGN--------- 146 (245)
T ss_dssp HHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHCC---------
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC-EEEEEeChhhccCC---------
Confidence 57999999997542 233455678899999996655554 4556654 99999998654321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.|.+++.++.++ |+++++||||.++++..... ...+...+....+ ...
T Consensus 147 ---~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~------------~~~ 209 (245)
T 2ph3_A 147 ---PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTERL--PQEVKEAYLKQIP------------AGR 209 (245)
T ss_dssp ---SSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTS--CHHHHHHHHHTCT------------TCS
T ss_pred ---CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhhc--CHHHHHHHHhcCC------------CCC
Confidence 345789999999999999988775 89999999999998743211 1122233332221 134
Q ss_pred ceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 339 FTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+++++|+|++++.++..+.. ..| ++|++.++.
T Consensus 210 ~~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gg~ 242 (245)
T 2ph3_A 210 FGRPEEVAEAVAFLVSEKAGYITG-----------QTLCVDGGL 242 (245)
T ss_dssp CBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTC
T ss_pred CcCHHHHHHHHHHHhCcccccccC-----------CEEEECCCC
Confidence 78999999999999876432 223 899998864
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-23 Score=203.48 Aligned_cols=232 Identities=14% Similarity=0.112 Sum_probs=171.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ......... ...++.++.+|++|+++++++++.+
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNA----LAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVR 81 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHH----HHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985432 122222221 2347899999999999999888743
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ..+.++.+..+++|+.|+.++++++.. .+. ++||++||...+...
T Consensus 82 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 152 (280)
T 3tox_A 82 RFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGG-GSLTFTSSFVGHTAG-------- 152 (280)
T ss_dssp HHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCSBTTTBC--------
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEcChhhCcCC--------
Confidence 67999999997532 334566778999999999999988643 343 399999998865211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC--CcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .........+....++
T Consensus 153 ---~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~----------- 218 (280)
T 3tox_A 153 ---FAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHAL----------- 218 (280)
T ss_dssp ---CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTSTT-----------
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCcc-----------
Confidence 1456789999999999999998875 89999999999999853220 0112223333333222
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccHH
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPVG 386 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~~ 386 (476)
..+..++|+|++++.++..... .+| +++++.++..++..
T Consensus 219 -~r~~~pedvA~~v~~L~s~~a~~itG-----------~~i~vdGG~~~~~~ 258 (280)
T 3tox_A 219 -KRIARPEEIAEAALYLASDGASFVTG-----------AALLADGGASVTKA 258 (280)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGCC-
T ss_pred -CCCcCHHHHHHHHHHHhCccccCCcC-----------cEEEECCCcccccc
Confidence 2477899999999999876532 333 99999998766543
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=202.53 Aligned_cols=224 Identities=12% Similarity=0.068 Sum_probs=162.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||+++++.|+++|++|++++|+.+. .......... ..++.++.+|++|.++++++++..
T Consensus 42 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 117 (285)
T 2c07_A 42 GENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKS----CDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT 117 (285)
T ss_dssp CSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHH----HHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHH----HHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999998874321 1111111111 346889999999999999888642
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 118 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~--------- 187 (285)
T 2c07_A 118 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYG-RIINISSIVGLTGN--------- 187 (285)
T ss_dssp HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHCC---------
T ss_pred hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEECChhhccCC---------
Confidence 67999999997532 23445667899999999888887764 44544 99999998765322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|.++..... ...+...+....+. ..
T Consensus 188 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~~------------~~ 250 (285)
T 2c07_A 188 ---VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI--SEQIKKNIISNIPA------------GR 250 (285)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C--CHHHHHHHHTTCTT------------SS
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhhc--CHHHHHHHHhhCCC------------CC
Confidence 345789999999999999988764 89999999999998853321 12233333332211 23
Q ss_pred ceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 339 FTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+++++|+|++++.++..+.. .+| +++++.++.
T Consensus 251 ~~~~~dvA~~~~~l~~~~~~~~~G-----------~~i~v~gG~ 283 (285)
T 2c07_A 251 MGTPEEVANLACFLSSDKSGYING-----------RVFVIDGGL 283 (285)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTS
T ss_pred CCCHHHHHHHHHHHhCCCcCCCCC-----------CEEEeCCCc
Confidence 78999999999999876543 233 899998874
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=196.03 Aligned_cols=223 Identities=16% Similarity=0.120 Sum_probs=162.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. . ....+..++.++.+|++|+++++++++.. ++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-------~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i 75 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESK-------L-QELEKYPGIQTRVLDVTKKKQIDQFANEVERL 75 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH-------H-GGGGGSTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH-------H-HHHHhccCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 467899999999999999999999999999999984321 1 11112237899999999999998877654 67
Q ss_pred cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 195 d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
|+||||||.... +...++.+..+++|+.++.++++++. +.+.. +||++||.+.+.... .+
T Consensus 76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~~-----------~~ 143 (246)
T 2ag5_A 76 DVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSG-NIINMSSVASSVKGV-----------VN 143 (246)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSBTTTBCC-----------TT
T ss_pred CEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEechHhCcCCC-----------CC
Confidence 999999997543 22345566789999999999998864 34443 999999987653220 14
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC----CCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
...|+.+|.+.|.+++.++.++ |+++++||||.|++|.... ..........+....+. ..+
T Consensus 144 ~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 211 (246)
T 2ag5_A 144 RCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKT------------GRF 211 (246)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTT------------SSC
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCCC------------CCC
Confidence 5789999999999999988765 8999999999999973211 00001122222222111 237
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+++|+|++++.++..+.. .+| +++++.++.
T Consensus 212 ~~~~dvA~~v~~l~s~~~~~~tG-----------~~i~vdgG~ 243 (246)
T 2ag5_A 212 ATAEEIAMLCVYLASDESAYVTG-----------NPVIIDGGW 243 (246)
T ss_dssp EEHHHHHHHHHHHHSGGGTTCCS-----------CEEEECTTG
T ss_pred CCHHHHHHHHHHHhCccccCCCC-----------CEEEECCCc
Confidence 8899999999999865432 233 899998874
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=209.51 Aligned_cols=247 Identities=15% Similarity=0.105 Sum_probs=178.5
Q ss_pred CCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC------CCCchHHHHHHhhh-cCCceEEEEeecCCHHHH
Q 011841 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS------YYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLL 185 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~------~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l 185 (476)
+...++|+||||||+|+||++++++|+++|++|++++|+.. .............. ....+.++.+|++|.+++
T Consensus 22 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v 101 (322)
T 3qlj_A 22 MGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQA 101 (322)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHH
Confidence 33467899999999999999999999999999999998621 00112222222221 234788999999999999
Q ss_pred HHhhccC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC---------CCeEEEecCcc
Q 011841 186 TKLFDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP---------QPSIVWASSSS 247 (476)
Q Consensus 186 ~~~~~~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~---------~~~~V~~SS~~ 247 (476)
+++++.+ ++|+||||||.... +.+.++.+..+++|+.++.++++++..... ..+||++||..
T Consensus 102 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~ 181 (322)
T 3qlj_A 102 AGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGA 181 (322)
T ss_dssp HHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHH
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHH
Confidence 9888754 67999999998542 334556778999999999999998743211 13899999987
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCce
Q 011841 248 VYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTI 324 (476)
Q Consensus 248 vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~ 324 (476)
.+... .+...|+.+|.+.+.+++.++.+ +|+++++|+|| +..+....... ....
T Consensus 182 ~~~~~------------~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~~~~--~~~~-------- 238 (322)
T 3qlj_A 182 GLQGS------------VGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTETVFA--EMMA-------- 238 (322)
T ss_dssp HHHCB------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCCSCC--C-----------
T ss_pred HccCC------------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchhhhh--hhhh--------
Confidence 65322 35578999999999999999877 58999999999 76653321100 0000
Q ss_pred EEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcc-----------------cHH
Q 011841 325 DVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPV-----------------PVG 386 (476)
Q Consensus 325 ~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~v-----------------t~~ 386 (476)
.......++.++|+|++++.++..... .+| ++|++.++... ++.
T Consensus 239 -------~~~~~~~~~~pedva~~v~~L~s~~~~~itG-----------~~i~vdGG~~~~~~~~~~~~~~~~~~~~~~~ 300 (322)
T 3qlj_A 239 -------TQDQDFDAMAPENVSPLVVWLGSAEARDVTG-----------KVFEVEGGKIRVAEGWAHGPQIDKGARWDPA 300 (322)
T ss_dssp ------------CCTTCGGGTHHHHHHHTSGGGGGCCS-----------CEEEEETTEEEEEECCEEEEEEECSSCCCGG
T ss_pred -------ccccccCCCCHHHHHHHHHHHhCccccCCCC-----------CEEEECCCccccCCCcccccccCccCCCCHH
Confidence 012223467899999999998865433 233 88999887644 779
Q ss_pred HHHHHHHHHhCCCc
Q 011841 387 RLVSILENLLNTKA 400 (476)
Q Consensus 387 el~~~l~~~~g~~~ 400 (476)
|+++.+.+.+|.+.
T Consensus 301 el~~~~~~~~~~~~ 314 (322)
T 3qlj_A 301 ELGPVVADLLGKAR 314 (322)
T ss_dssp GHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhccC
Confidence 99999999998653
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=200.99 Aligned_cols=227 Identities=14% Similarity=0.105 Sum_probs=167.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ....... ...++.++.+|++|.++++++++.+
T Consensus 25 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~----~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (277)
T 4dqx_A 25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDA----AVRVANE--IGSKAFGVRVDVSSAKDAESMVEKTTAK 98 (277)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHH--HCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHH--hCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999985421 1111111 1347899999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.|+.++++++. +.+. ++||++||...+...
T Consensus 99 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 167 (277)
T 4dqx_A 99 WGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGG-GSIINTTSYTATSAI---------- 167 (277)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTC-EEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEECchhhCcCC----------
Confidence 67999999997433 23445667789999999999988874 3333 399999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC----CCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR----PDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++... ...........+....+
T Consensus 168 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~------------ 233 (277)
T 4dqx_A 168 --ADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAV------------ 233 (277)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTST------------
T ss_pred --CCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcCc------------
Confidence 456789999999999999988775 899999999999886310 00011111111222222
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
...+.+++|+|++++.++..... .+| +++++.++..++
T Consensus 234 ~~r~~~pedvA~~v~~L~s~~~~~itG-----------~~i~vdGG~~~~ 272 (277)
T 4dqx_A 234 MDRMGTAEEIAEAMLFLASDRSRFATG-----------SILTVDGGSSIG 272 (277)
T ss_dssp TCSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESSSSSSC
T ss_pred ccCCcCHHHHHHHHHHHhCCccCCCcC-----------CEEEECCchhhh
Confidence 23467899999999999876543 233 899999987654
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.6e-24 Score=207.36 Aligned_cols=229 Identities=14% Similarity=0.052 Sum_probs=168.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..++ ...+.. ...++.++.+|++|+++++++++.+
T Consensus 24 l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~----~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (271)
T 4ibo_A 24 LGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQ----TVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDE 99 (271)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHH----HHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH----HHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999985432221 222211 2347899999999999999888754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.. .+. ++||++||...+...
T Consensus 100 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iV~isS~~~~~~~--------- 169 (271)
T 4ibo_A 100 QGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGY-GKIVNIGSLTSELAR--------- 169 (271)
T ss_dssp HTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSBC---------
T ss_pred HCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEEccHHhCCCC---------
Confidence 67999999997532 234556778999999999999887643 344 399999998765322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++..........+...+....++ ..
T Consensus 170 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------~r 234 (271)
T 4ibo_A 170 ---ATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPA------------KR 234 (271)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHSTT------------CS
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCCC------------CC
Confidence 45678999999999999998877 4899999999999987432100001222333333222 23
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
+..++|+|++++.++.... ..+| +++++.++...+
T Consensus 235 ~~~pedva~~v~~L~s~~~~~itG-----------~~i~vdGG~~~~ 270 (271)
T 4ibo_A 235 WGKPQELVGTAVFLSASASDYVNG-----------QIIYVDGGMLSV 270 (271)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGB
T ss_pred CcCHHHHHHHHHHHhCccccCCCC-----------cEEEECCCeecc
Confidence 6778999999999886643 2333 899999886543
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=199.68 Aligned_cols=227 Identities=17% Similarity=0.121 Sum_probs=163.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+ .............++.++.+|++|+++++++++.+
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD----VGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999532 11112222222257999999999999999888763
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++.++++.+ ++.+..++||++||...+...
T Consensus 80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 149 (251)
T 1zk4_A 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD---------- 149 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC----------
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCC----------
Confidence 57999999997432 2234456778999999887776654 445542499999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.|.+++.++.+ .|+++++||||.|+++....... ......+.. .....
T Consensus 150 --~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~------------~~~~~ 214 (251)
T 1zk4_A 150 --PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG-AEEAMSQRT------------KTPMG 214 (251)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT-HHHHHTSTT------------TCTTS
T ss_pred --CCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhcCc-hhhhHHHhh------------cCCCC
Confidence 35678999999999999887753 47999999999999974221100 011110111 11123
Q ss_pred eceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 338 DFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.+++++|+|++++.++..+.. .+| +++++.++..
T Consensus 215 ~~~~~~dva~~~~~l~~~~~~~~~G-----------~~~~v~gG~~ 249 (251)
T 1zk4_A 215 HIGEPNDIAYICVYLASNESKFATG-----------SEFVVDGGYT 249 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred CCcCHHHHHHHHHHHcCcccccccC-----------cEEEECCCcc
Confidence 488999999999999976532 233 8999988753
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-23 Score=198.79 Aligned_cols=238 Identities=13% Similarity=0.060 Sum_probs=161.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+...+... ......++.++.+|++|+++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIA-SLVSGAQVDIVAGDIREPGDIDRLFEKARDL 83 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH-HHSTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH-hcCCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999995432111111111 0000227899999999999998888721
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++ ++.+.. +||++||...+...
T Consensus 84 ~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~----------- 151 (260)
T 2z1n_A 84 GGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWG-RMVYIGSVTLLRPW----------- 151 (260)
T ss_dssp TCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC-----------
T ss_pred cCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECchhhcCCC-----------
Confidence 27999999997432 2234566789999999997777665 345554 99999999876432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.+...|+.+|.+.+.+++.++.++ |+++++||||.|+++.......................+ ........+.
T Consensus 152 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~r~~ 227 (260)
T 2z1n_A 152 -QDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSM---ASRIPMGRVG 227 (260)
T ss_dssp -TTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC--------------------------CCTTSSCC
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHH---HhcCCCCCcc
Confidence 345789999999999999988775 899999999999998543110000000000000000000 0011123478
Q ss_pred eHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 341 YIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+++|+|++++.++..+. ..+| +++++.++.
T Consensus 228 ~~~dva~~v~~l~s~~~~~~tG-----------~~i~vdGG~ 258 (260)
T 2z1n_A 228 KPEELASVVAFLASEKASFITG-----------AVIPVDGGA 258 (260)
T ss_dssp CHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTT
T ss_pred CHHHHHHHHHHHhCccccCCCC-----------CEEEeCCCc
Confidence 99999999999987643 2233 899998864
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.4e-23 Score=197.85 Aligned_cols=232 Identities=14% Similarity=0.097 Sum_probs=162.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|+++++.... .......... ...++.++.+|++|.++++++++.+
T Consensus 6 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (259)
T 3edm_A 6 FTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAE---GAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAAD 82 (259)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCH---HHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999654331 1111111111 2347899999999999999988754
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCcccc-CCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVY-GLNTQVPFSESHR 262 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vy-g~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++..... ..+||++||...+ ...
T Consensus 83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~---------- 152 (259)
T 3edm_A 83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGG---------- 152 (259)
T ss_dssp HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCS----------
T ss_pred HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCC----------
Confidence 67999999986421 233445678899999999999999876432 1389999998876 221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.+...|+.+|.+.+.+++.++.+++ +++++|+||.|.++...... ...+...+ ........+.
T Consensus 153 --~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~~~-~~~~~~~~------------~~~~p~~r~~ 217 (259)
T 3edm_A 153 --PGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDTFT-KPEVRERV------------AGATSLKREG 217 (259)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC-----------------------------------CCB
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCccccccc-ChHHHHHH------------HhcCCCCCCc
Confidence 4567899999999999999988864 99999999999887432110 01111111 1123334578
Q ss_pred eHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccHH
Q 011841 341 YIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPVG 386 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~~ 386 (476)
+++|+|++++.++..... .+| ++|++.++...+..
T Consensus 218 ~pedva~~v~~L~s~~~~~itG-----------~~i~vdGg~~~~~~ 253 (259)
T 3edm_A 218 SSEDVAGLVAFLASDDAAYVTG-----------ACYDINGGVLFSEG 253 (259)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCS-----------CEEEESBCSSBC--
T ss_pred CHHHHHHHHHHHcCccccCccC-----------CEEEECCCcCCCCC
Confidence 999999999998876532 233 99999988755443
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=202.08 Aligned_cols=230 Identities=16% Similarity=0.085 Sum_probs=156.0
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
...+|+||||||+|+||+++++.|+++|++|++++|.+.. .......... ...++.++.+|++|+++++++++.+
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 102 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAE---GVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVV 102 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHH---HHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHH---HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999974321 1111111111 2357999999999999999888754
Q ss_pred ----CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHHhc----CC--CCeEEEecCccccCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKSV----NP--QPSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~--~~~~V~~SS~~vyg~~~~~~ 256 (476)
++|+||||||.... +.+.++++..+++|+.++.++++++... +. ..+||++||...+...
T Consensus 103 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~---- 178 (280)
T 4da9_A 103 AEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTS---- 178 (280)
T ss_dssp HHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC----------
T ss_pred HHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCC----
Confidence 67999999997321 2245566788999999999998886432 21 2389999998765322
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++..... .......+.. +.
T Consensus 179 --------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~-----------~~ 237 (280)
T 4da9_A 179 --------PERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAV--SGKYDGLIES-----------GL 237 (280)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-------------------------------
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhc--chhHHHHHhh-----------cC
Confidence 34578999999999999999877 479999999999998743311 0111111111 01
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
.....+..++|+|++++.++..... .+| +++++.++..+
T Consensus 238 ~p~~r~~~pedvA~~v~~L~s~~~~~itG-----------~~i~vdGG~~~ 277 (280)
T 4da9_A 238 VPMRRWGEPEDIGNIVAGLAGGQFGFATG-----------SVIQADGGLSI 277 (280)
T ss_dssp ----CCBCHHHHHHHHHHHHTSTTGGGTT-----------CEEEESTTCC-
T ss_pred CCcCCcCCHHHHHHHHHHHhCccccCCCC-----------CEEEECCCccc
Confidence 2234578899999999998876542 333 89999887543
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-23 Score=207.36 Aligned_cols=241 Identities=15% Similarity=0.104 Sum_probs=173.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CC---ceEEEEeecCCHHHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KH---QVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~---~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
.++|+||||||+|+||+++++.|+++|++|++++|+.+.. ......... .. ++.++.+|++|+++++++++.
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 99 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRL----EETKQQILKAGVPAEKINAVVADVTEASGQDDIINT 99 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHH
Confidence 5678999999999999999999999999999999954322 111111111 12 689999999999999988874
Q ss_pred C-----CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCC
Q 011841 192 V-----PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 192 ~-----~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~ 256 (476)
+ ++|+||||||.... ....++.+..+++|+.++.++++++.. .+ ++||++||...+...
T Consensus 100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS~~~~~~~---- 173 (297)
T 1xhl_A 100 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGPQA---- 173 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGSSSC----
T ss_pred HHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcCchhccCC----
Confidence 3 67999999997432 223455678999999999999988754 33 499999998876432
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC-c------HHHHHHHHHcCCceEE
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM-A------YFFFTKDILQGKTIDV 326 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~-~------~~~~~~~~~~g~~~~~ 326 (476)
..+...|+.+|.+.+.+++.++.+ +|+++++||||.|.++...... . ...+...+....
T Consensus 174 -------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 242 (297)
T 1xhl_A 174 -------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECI---- 242 (297)
T ss_dssp -------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTC----
T ss_pred -------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCccccccccccccccchHHHHHHHHhcC----
Confidence 034568999999999999988865 4899999999999987321110 0 001111111111
Q ss_pred EeeCCCCceeEeceeHHHHHHHHHHHHhhc--CcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHh
Q 011841 327 YKTQDDREVARDFTYIDDVVKGCVGALDTA--GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLL 396 (476)
Q Consensus 327 ~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~--~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~ 396 (476)
....+..++|+|++++.++..+ ...+| +++++.++..+...+.++.+.+++
T Consensus 243 --------p~~r~~~pedvA~~v~~l~s~~~~~~itG-----------~~i~vdGG~~~~~~~~~~~~~~~~ 295 (297)
T 1xhl_A 243 --------PVGHCGKPEEIANIIVFLADRNLSSYIIG-----------QSIVADGGSTLVMGMQTHDLMSVL 295 (297)
T ss_dssp --------TTSSCBCHHHHHHHHHHHHCHHHHTTCCS-----------CEEEESTTGGGCCGGGGSCHHHHT
T ss_pred --------CCCCCcCHHHHHHHHHHHhCCcccCCccC-----------cEEEECCCccccccccccchhhhh
Confidence 1124789999999999998764 23333 899999988777777666655543
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=200.30 Aligned_cols=229 Identities=14% Similarity=0.076 Sum_probs=158.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ..+..... ...+.++.+|++|.++++++++.+
T Consensus 7 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (261)
T 3n74_A 7 LEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAG----AERVAGEI--GDAALAVAADISKEADVDAAVEAALSK 80 (261)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHH--CTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHH----HHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999995431 11122111 347899999999999999888754
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhc----C---CCCeEEEecCccccCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV----N---PQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~---~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|+||||||.... ....++.+..+++|+.++.++++++... + ...+||++||...+...
T Consensus 81 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 154 (261)
T 3n74_A 81 FGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPR------ 154 (261)
T ss_dssp HSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCC------
T ss_pred cCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCC------
Confidence 68999999997542 1234556778999999999988876432 1 12379999998865322
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC--cHHHHHHHHHcCCceEEEeeCCCC
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM--AYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
+....|+.+|.+.+.+++.++.+ .|+++++|+||.+.++...... ....+...+ ...
T Consensus 155 ------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~------------~~~ 216 (261)
T 3n74_A 155 ------PNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKF------------RDS 216 (261)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------------------------------------
T ss_pred ------CCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhhhcccCcHHHHHHH------------hhc
Confidence 45567999999999999998877 4899999999999987433110 000111111 112
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccH
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPV 385 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~ 385 (476)
.....+++++|+|++++.++..... .+| +++++.++..++-
T Consensus 217 ~~~~~~~~~~dva~~~~~l~s~~~~~itG-----------~~i~vdgG~~~~~ 258 (261)
T 3n74_A 217 IPMGRLLKPDDLAEAAAFLCSPQASMITG-----------VALDVDGGRSIGG 258 (261)
T ss_dssp CTTSSCCCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTTTC--
T ss_pred CCcCCCcCHHHHHHHHHHHcCCcccCcCC-----------cEEEecCCcccCC
Confidence 2234588999999999999865432 233 9999999877654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=202.49 Aligned_cols=213 Identities=16% Similarity=0.127 Sum_probs=149.8
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
...+|+||||||+|+||++++++|+++|++|++++|+.+. ........ ..++.++.+|++|+++++++++.+
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~ 98 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDA----LQETAAEI--GDDALCVPTDVTDPDSVRALFTATVE 98 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHH--TSCCEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHh--CCCeEEEEecCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999995431 11121111 257899999999999999988754
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCC-CCeEEEecCccccCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNP-QPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~-~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++.. .+. .++||++||...+...
T Consensus 99 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~------- 171 (272)
T 4dyv_A 99 KFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPR------- 171 (272)
T ss_dssp HHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCC-------
T ss_pred HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCC-------
Confidence 67999999997432 234456678999999998888887643 321 2489999998865322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... +..+...... ....
T Consensus 172 -----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----------~~~~~~~~~~-----~~~~ 231 (272)
T 4dyv_A 172 -----PYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQK----------MKAGVPQADL-----SIKV 231 (272)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC-----------------------------------
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhh----------hcccchhhhh-----cccc
Confidence 456789999999999999988774 8999999999998874321 1111100000 1222
Q ss_pred EeceeHHHHHHHHHHHHhhcCcCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAGKST 360 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~~~ 360 (476)
..++.++|+|++++.++..+....
T Consensus 232 ~~~~~pedvA~~v~fL~s~~~~~~ 255 (272)
T 4dyv_A 232 EPVMDVAHVASAVVYMASLPLDAN 255 (272)
T ss_dssp ----CHHHHHHHHHHHHHSCTTSC
T ss_pred cCCCCHHHHHHHHHHHhCCCCcCc
Confidence 347899999999999999876653
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-22 Score=197.58 Aligned_cols=230 Identities=13% Similarity=0.034 Sum_probs=167.9
Q ss_pred CCCCCEEEEECCCCh--hhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 115 RPNGMTVLVTGAAGF--VGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~--IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
..++|+||||||+|+ ||+++++.|+++|++|++++|+.. ..+..........++.++.+|++|.++++++++.+
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 103 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDA----LKKRVEPLAEELGAFVAGHCDVADAASIDAVFETL 103 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHH----HHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHH
Confidence 367899999999987 999999999999999999998521 11111111112246889999999999999888754
Q ss_pred -----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|+||||||.... +...++.+..+++|+.++.++++++...-. ..+||++||...+...
T Consensus 104 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~------ 177 (293)
T 3grk_A 104 EKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVM------ 177 (293)
T ss_dssp HHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBC------
T ss_pred HHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCC------
Confidence 68999999998642 334456678999999999999999875332 2489999998876432
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+...+....++
T Consensus 178 ------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~----------- 240 (293)
T 3grk_A 178 ------PNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPL----------- 240 (293)
T ss_dssp ------TTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------CCHHHHHHHHHHHSTT-----------
T ss_pred ------CchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCC-----------
Confidence 456789999999999999988774 899999999999997543322223333333333222
Q ss_pred eEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 336 ARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..+..++|+|++++.++.... ..+| +++++.++..+
T Consensus 241 -~r~~~pedvA~~v~~L~s~~~~~itG-----------~~i~vdGG~~~ 277 (293)
T 3grk_A 241 -RRTVTIDEVGDVGLYFLSDLSRSVTG-----------EVHHADSGYHV 277 (293)
T ss_dssp -SSCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGG
T ss_pred -CCCCCHHHHHHHHHHHcCccccCCcc-----------eEEEECCCccc
Confidence 236778999999999887643 2333 89999988654
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=201.26 Aligned_cols=224 Identities=16% Similarity=0.098 Sum_probs=162.9
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
...++|+||||||+|+||++++++|+++|++|++++|+.+. ....... . ..++.++.+|++|+++++++++.+
T Consensus 23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~-~-~~~~~~~~~Dv~d~~~v~~~~~~~~ 96 (266)
T 3grp_A 23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDK----LKEIAAD-L-GKDVFVFSANLSDRKSIKQLAEVAE 96 (266)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHH-H-CSSEEEEECCTTSHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHH-h-CCceEEEEeecCCHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999985321 1111111 1 347999999999999999888743
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ..+.++++..+++|+.++..+++++ ++.+.. +||++||...+.+.
T Consensus 97 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~Iv~isS~~~~~~~-------- 167 (266)
T 3grp_A 97 REMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYG-RIINITSIVGVVGN-------- 167 (266)
T ss_dssp HHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCC--------------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-EEEEECCHHHcCCC--------
Confidence 67999999997542 2345667789999999977777665 344543 99999998765322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .......+....++ .
T Consensus 168 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~------------~ 229 (266)
T 3grp_A 168 ----PGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDKL--NEKQKEAIMAMIPM------------K 229 (266)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHTC--CHHHHHHHHTTCTT------------C
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhcc--CHHHHHHHHhcCCC------------C
Confidence 355789999999999999988774 89999999999998732211 12233444444333 3
Q ss_pred eceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+.+++|+|++++.++..... .+| +++++.++.
T Consensus 230 r~~~~edvA~~v~~L~s~~~~~itG-----------~~i~vdGG~ 263 (266)
T 3grp_A 230 RMGIGEEIAFATVYLASDEAAYLTG-----------QTLHINGGM 263 (266)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTC
T ss_pred CCcCHHHHHHHHHHHhCccccCccC-----------CEEEECCCe
Confidence 467899999999998876533 333 899998875
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=204.95 Aligned_cols=232 Identities=13% Similarity=0.106 Sum_probs=164.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+............. ....++.++.+|++|.++++++++.+
T Consensus 16 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 95 (303)
T 1yxm_A 16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL 95 (303)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999999995432111111111100 02347999999999999999988763
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ....++.+..+++|+.++.++++++.. .+. ++||++||.+.++ .
T Consensus 96 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~-~-------- 165 (303)
T 1yxm_A 96 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIVPTKAG-F-------- 165 (303)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECCCCTTC-C--------
T ss_pred HHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CeEEEEEeecccC-C--------
Confidence 57999999996432 223445677899999999999998754 222 3899999987321 1
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCC--CCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW--GRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.+...|+.+|.+.+.+.+.++.++ |+++++||||.|+|+. .........+...+.... .
T Consensus 166 ----~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~------------p 229 (303)
T 1yxm_A 166 ----PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKI------------P 229 (303)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGS------------T
T ss_pred ----CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhhccccchHHHHHHHhcC------------c
Confidence 345689999999999999988775 8999999999999983 221100011111111111 1
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
...+++++|+|++++.++..... .+| +++++.++..++
T Consensus 230 ~~~~~~~~dvA~~i~~l~~~~~~~~~G-----------~~~~v~gG~~~~ 268 (303)
T 1yxm_A 230 AKRIGVPEEVSSVVCFLLSPAASFITG-----------QSVDVDGGRSLY 268 (303)
T ss_dssp TSSCBCTHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGC
T ss_pred ccCCCCHHHHHHHHHHHhCcccccCCC-----------cEEEECCCeecc
Confidence 12478999999999999866432 233 899999986543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=201.85 Aligned_cols=218 Identities=16% Similarity=0.092 Sum_probs=155.4
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..++|+||||||+|+||++++++|+++|++|++++|+.+...+ ...... ...++.++.+|++|.++++++++.+
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~----~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 103 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQ----AVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAF 103 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH----HHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH----HHHHHHhcCCceEEEEccCCCHHHHHHHHHHHH
Confidence 3578899999999999999999999999999999995432222 111111 1347899999999999999888754
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ..+.++.+..+++|+.|+.++++++. +.+..++||++||...+.+.
T Consensus 104 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 175 (301)
T 3tjr_A 104 RLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPN-------- 175 (301)
T ss_dssp HHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC--------
T ss_pred HhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC--------
Confidence 67999999997532 33455667899999999999999864 34423489999998876322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHH-----HHHcCCceEEEeeCCC
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTK-----DILQGKTIDVYKTQDD 332 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~ 332 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++... .... ......+...+ +.
T Consensus 176 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~------~~~~~~~~~~~~~~~~~~~~---~~ 242 (301)
T 3tjr_A 176 ----AGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVS------NSERIRGADYGMSATPEGAF---GP 242 (301)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHH------HHHHHC-------------------
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCcccccccc------ccccccchhhccccChhhhc---cc
Confidence 456789999999999999988775 899999999999876211 1100 00111122222 12
Q ss_pred CceeEeceeHHHHHHHHHHHHhhcC
Q 011841 333 REVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 333 ~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
......+++++|+|++++.+++.+.
T Consensus 243 ~~~~~~~~~pedvA~~i~~~l~~~~ 267 (301)
T 3tjr_A 243 LPTQDESVSADDVARLTADAILANR 267 (301)
T ss_dssp ------CCCHHHHHHHHHHHHHHTC
T ss_pred cccccCCCCHHHHHHHHHHHHhcCC
Confidence 2334568999999999999998753
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-23 Score=196.30 Aligned_cols=225 Identities=16% Similarity=0.103 Sum_probs=161.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|.+.. .......... ...++.++.+|++|+++++++++.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQ---KANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVD 78 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999983211 1111111111 1346889999999999999888743
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+.. +||++||...+.+.
T Consensus 79 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 148 (246)
T 2uvd_A 79 VFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHG-RIVNIASVVGVTGN--------- 148 (246)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHCC---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECCHHhcCCC---------
Confidence 67999999997532 23345567899999999777776653 44544 99999998764321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
++...|+.+|.+.+.+.+.++.++ |+++++|+||.|.++...... ......+....+. ..
T Consensus 149 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~p~------------~~ 211 (246)
T 2uvd_A 149 ---PGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVLD--ENIKAEMLKLIPA------------AQ 211 (246)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCCC--TTHHHHHHHTCTT------------CS
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhcC--HHHHHHHHhcCCC------------CC
Confidence 345789999999999998887664 899999999999987533211 1111222222111 23
Q ss_pred ceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 339 FTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+++++|+|++++.++..+.. .+| +++++.++.
T Consensus 212 ~~~~~dvA~~~~~l~s~~~~~~tG-----------~~~~vdgG~ 244 (246)
T 2uvd_A 212 FGEAQDIANAVTFFASDQSKYITG-----------QTLNVDGGM 244 (246)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTS
T ss_pred CcCHHHHHHHHHHHcCchhcCCCC-----------CEEEECcCc
Confidence 78999999999999865432 233 899998874
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=194.60 Aligned_cols=223 Identities=15% Similarity=0.070 Sum_probs=160.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ........ . ..++.++.+|++|+++++++++.+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~D~~~~~~~~~~~~~~~~~ 76 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE----EGAATARE-L-GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHT-T-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH-h-CCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998432 11111111 1 246889999999999999888743
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHH----HHHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLE----VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~----~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.++..+++ .+++.+.. +||++||.+.+...
T Consensus 77 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~---------- 145 (254)
T 1hdc_A 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGG-SIVNISSAAGLMGL---------- 145 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEECchhhccCC----------
Confidence 57999999997542 23445667889999999885554 45555554 99999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.++ |+++++||||.|+++. ..... ....... ........+
T Consensus 146 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~----------~~~~~-~~~~~~~---~~~~p~~~~ 209 (254)
T 1hdc_A 146 --ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM----------TAETG-IRQGEGN---YPNTPMGRV 209 (254)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH----------HHHHT-CCCSTTS---CTTSTTSSC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCcc----------ccccc-hhHHHHH---HhcCCCCCC
Confidence 356789999999999999988764 8999999999999872 11111 1000000 001111236
Q ss_pred e-eHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 T-YIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v-~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
. +++|+|++++.++..+.. .+| +++++.++..
T Consensus 210 ~~~~~dvA~~v~~l~s~~~~~~tG-----------~~~~vdgG~~ 243 (254)
T 1hdc_A 210 GNEPGEIAGAVVKLLSDTSSYVTG-----------AELAVDGGWT 243 (254)
T ss_dssp B-CHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTT
T ss_pred CCCHHHHHHHHHHHhCchhcCCCC-----------CEEEECCCcc
Confidence 7 999999999999876532 233 8999988754
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-23 Score=200.44 Aligned_cols=228 Identities=14% Similarity=0.113 Sum_probs=158.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++++||||||+|+||++++++|+++|++|+++.+.... .......... ...++.++.+|++|.++++++++.+
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 100 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANRE---AADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDR 100 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChh---HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999999887443221 1111111111 1347899999999999999888754
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhc------CCCCeEEEecCccccCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV------NPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~------~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++... +..++||++||.+.+....
T Consensus 101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~----- 175 (272)
T 4e3z_A 101 QFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSA----- 175 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCT-----
T ss_pred hCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCC-----
Confidence 68999999997542 2244566789999999999999887543 1224899999987653221
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..... ........+..+ ..
T Consensus 176 ------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~------------~~ 236 (272)
T 4e3z_A 176 ------TQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASG-GLPDRAREMAPS------------VP 236 (272)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------------C------------CT
T ss_pred ------CCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCccccc-CChHHHHHHhhc------------CC
Confidence 234679999999999999988776 89999999999999853321 111111212212 12
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
...+.+++|+|++++.++..... .+| ++|++.++.
T Consensus 237 ~~~~~~~edvA~~i~~l~s~~~~~~tG-----------~~i~vdgG~ 272 (272)
T 4e3z_A 237 MQRAGMPEEVADAILYLLSPSASYVTG-----------SILNVSGGR 272 (272)
T ss_dssp TSSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTC
T ss_pred cCCCcCHHHHHHHHHHHhCCccccccC-----------CEEeecCCC
Confidence 23467899999999999876433 233 899998763
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=196.45 Aligned_cols=231 Identities=11% Similarity=0.004 Sum_probs=171.5
Q ss_pred CCCCCCCEEEEECCCCh--hhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc
Q 011841 113 PRRPNGMTVLVTGAAGF--VGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~--IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
|...++|+||||||+|+ ||++++++|+++|++|++++|.. ..+..+... ....++.++.+|++|.++++++++
T Consensus 21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~---~~~~~~~~~~~Dl~~~~~v~~~~~ 95 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLC---AEFNPAAVLPCDVISDQEIKDLFV 95 (280)
T ss_dssp -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHH---GGGCCSEEEECCTTCHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHH---HhcCCceEEEeecCCHHHHHHHHH
Confidence 44467899999999966 99999999999999999999965 112222221 123468999999999999998887
Q ss_pred cC-----CccEEEEccccCChh---------hhhcChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCccccCCCCC
Q 011841 191 VV-----PFTHVLHLAAQAGVR---------YAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQ 254 (476)
Q Consensus 191 ~~-----~~d~Vi~~Ag~~~~~---------~~~~~~~~~~~~nv~gt~~ll~~a~~~~--~~~~~V~~SS~~vyg~~~~ 254 (476)
.+ ++|+||||||..... ...++.+..+++|+.++.++++++...- ...+||++||.+.+...
T Consensus 96 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~-- 173 (280)
T 3nrc_A 96 ELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAM-- 173 (280)
T ss_dssp HHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCC--
T ss_pred HHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCC--
Confidence 64 689999999985431 3455667799999999999999876431 13499999998876432
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCC
Q 011841 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 331 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++..........+........++
T Consensus 174 ----------~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------- 236 (280)
T 3nrc_A 174 ----------PSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAMVSPL------- 236 (280)
T ss_dssp ----------TTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHHHSTT-------
T ss_pred ----------CCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhhcCcchHHHHHHHHhcCCC-------
Confidence 45678999999999999988876 4899999999999998544322233344434333222
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..+..++|+|++++.++.... ..+| +++++.++..+
T Consensus 237 -----~~~~~pedvA~~v~~l~s~~~~~~tG-----------~~i~vdgG~~~ 273 (280)
T 3nrc_A 237 -----KKNVDIMEVGNTVAFLCSDMATGITG-----------EVVHVDAGYHC 273 (280)
T ss_dssp -----CSCCCHHHHHHHHHHTTSGGGTTCCS-----------CEEEESTTGGG
T ss_pred -----CCCCCHHHHHHHHHHHhCcccCCcCC-----------cEEEECCCccc
Confidence 236778999999999887643 2333 89999988643
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=192.42 Aligned_cols=223 Identities=13% Similarity=0.057 Sum_probs=166.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ...... .. ...+..+.+|++|+++++++++.+
T Consensus 7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~----~~~~~~-~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (248)
T 3op4_A 7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESG----AQAISD-YL-GDNGKGMALNVTNPESIEAVLKAITDE 80 (248)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHH-HH-GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH-Hh-cccceEEEEeCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999985431 111111 12 235788999999999999988754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 81 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~---------- 149 (248)
T 3op4_A 81 FGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQ-GRIINVGSVVGTMGN---------- 149 (248)
T ss_dssp HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEEcchhhcCCC----------
Confidence 67999999997543 234556778999999999999998743 444 399999997765322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+.+.++.++ |+++++|+||.|.++...... ...........+. ..+
T Consensus 150 --~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~--~~~~~~~~~~~p~------------~r~ 213 (248)
T 3op4_A 150 --AGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKALN--DEQRTATLAQVPA------------GRL 213 (248)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTSC--HHHHHHHHHTCTT------------CSC
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhcC--HHHHHHHHhcCCC------------CCC
Confidence 456789999999999999988764 899999999999988543211 1222233333222 347
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.+++|+|++++.++..... .+| +++++.++..
T Consensus 214 ~~p~dva~~v~~L~s~~~~~itG-----------~~i~vdgG~~ 246 (248)
T 3op4_A 214 GDPREIASAVAFLASPEAAYITG-----------ETLHVNGGMY 246 (248)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTSS
T ss_pred cCHHHHHHHHHHHcCCccCCccC-----------cEEEECCCee
Confidence 8899999999988865432 233 8999988753
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=201.68 Aligned_cols=227 Identities=14% Similarity=0.053 Sum_probs=167.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..++...... ....++..+.+|++|.++++++++.+
T Consensus 26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFK---QAGLEGRGAVLNVNDATAVDALVESTLKE 102 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH---HHTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH---hcCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 577899999999999999999999999999999995432221111111 11347889999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++.++++++. +.+. ++||++||.+.+...
T Consensus 103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 171 (270)
T 3ftp_A 103 FGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARG-GRIVNITSVVGSAGN---------- 171 (270)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEECchhhCCCC----------
Confidence 67999999997443 23455677899999999999999874 3343 389999998765322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .......+....+ ...+
T Consensus 172 --~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~p------------~~r~ 235 (270)
T 3ftp_A 172 --PGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKGL--PQEQQTALKTQIP------------LGRL 235 (270)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHHS--CHHHHHHHHTTCT------------TCSC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhhc--CHHHHHHHHhcCC------------CCCC
Confidence 456789999999999999988774 89999999999988632110 0122223333322 2347
Q ss_pred eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 340 TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
.+++|+|++++.++.... ..+| +++++.++..+
T Consensus 236 ~~pedvA~~v~~L~s~~~~~itG-----------~~i~vdGG~~~ 269 (270)
T 3ftp_A 236 GSPEDIAHAVAFLASPQAGYITG-----------TTLHVNGGMFM 269 (270)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTSSC
T ss_pred CCHHHHHHHHHHHhCCCcCCccC-----------cEEEECCCccc
Confidence 889999999999886543 2233 89999988654
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=195.82 Aligned_cols=218 Identities=18% Similarity=0.106 Sum_probs=161.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ....... .. ..+.++.+|++|+++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~-~~-~~~~~~~~D~~~~~~v~~~~~~~~~~ 78 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEE----GKAMAAE-LA-DAARYVHLDVTQPAQWKAAVDTAVTA 78 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHH-TG-GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHH-hh-cCceEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999985321 1111111 11 25889999999999999988743
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++ ++.+.. +||++||.+.+...
T Consensus 79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~---------- 147 (260)
T 1nff_A 79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRG-SIINISSIEGLAGT---------- 147 (260)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEeehhhcCCC----------
Confidence 57999999997542 2334566789999999997666654 455554 99999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.|.+++.++.+ +|+++++||||.|+++..... ...+. ......+
T Consensus 148 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~------------~~~~~-------~~~~~~~ 206 (260)
T 1nff_A 148 --VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV------------PEDIF-------QTALGRA 206 (260)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS------------CTTCS-------CCSSSSC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCccccc------------hhhHH-------hCccCCC
Confidence 34568999999999999998877 489999999999999843200 00000 0111347
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
++++|+|++++.++..+.. .+| ++|++.++..
T Consensus 207 ~~~~dvA~~v~~l~s~~~~~~~G-----------~~~~v~gG~~ 239 (260)
T 1nff_A 207 AEPVEVSNLVVYLASDESSYSTG-----------AEFVVDGGTV 239 (260)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred CCHHHHHHHHHHHhCccccCCcC-----------CEEEECCCee
Confidence 8999999999999876432 223 8999998754
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=200.12 Aligned_cols=216 Identities=16% Similarity=0.117 Sum_probs=162.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|..+. ..++.++.+|++|.++++++++.+
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------------~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 71 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG--------------EAKYDHIECDVTNPDQVKASIDHIFKE 71 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC--------------SCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc--------------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999996542 246889999999999999888753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.. .+. ++||++||.+.+...
T Consensus 72 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 140 (264)
T 2dtx_A 72 YGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRD-PSIVNISSVQASIIT---------- 140 (264)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-CEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEECCchhccCC----------
Confidence 57999999997543 224456778999999999999888754 333 499999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeeCcccCCCCCCC-------Cc--HHHHHHHHHcCCceEEEeeCC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPD-------MA--YFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~G~~~~~~-------~~--~~~~~~~~~~g~~~~~~~~~~ 331 (476)
.+...|+.+|.+.+.+++.++.+++ +++++|+||.|.++..... .. +......+....
T Consensus 141 --~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 209 (264)
T 2dtx_A 141 --KNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEH--------- 209 (264)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHHS---------
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhcC---------
Confidence 4567899999999999999988765 9999999999987621100 00 001111111111
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
....+++++|+|++++.++..+. ..+| +++++.++.
T Consensus 210 ---p~~~~~~p~dvA~~v~~l~s~~~~~~tG-----------~~i~vdGG~ 246 (264)
T 2dtx_A 210 ---PMQRIGKPQEVASAVAFLASREASFITG-----------TCLYVDGGL 246 (264)
T ss_dssp ---TTSSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred ---CCCCCcCHHHHHHHHHHHhCchhcCCCC-----------cEEEECCCc
Confidence 11347899999999999987643 2233 899998874
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-23 Score=199.12 Aligned_cols=225 Identities=16% Similarity=0.099 Sum_probs=161.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ......... ..++.++.+|++|+++++++++.+
T Consensus 4 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (253)
T 1hxh_A 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA----AGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998532 111111111 347899999999999999888764
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++..+++++ ++.+ ++||++||.+.+...
T Consensus 78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~---------- 145 (253)
T 1hxh_A 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASVSSWLPI---------- 145 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcchhhcCCC----------
Confidence 67999999997532 2234556788999999887776654 4445 499999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeeCcccCCCCCCCCcHHHHHHH-HHcCCceEEEeeCCCCcee
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKD-ILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~G~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|+++....... ...... +.... .....
T Consensus 146 --~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~~~~-~~~~~~~~~~~~---------~~~p~ 213 (253)
T 1hxh_A 146 --EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLP-KGVSKEMVLHDP---------KLNRA 213 (253)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSC-TTCCHHHHBCBT---------TTBTT
T ss_pred --CCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhhccc-hhhhHHHHhhhh---------ccCcc
Confidence 345789999999999999988763 8999999999999873110000 000001 11100 00112
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+.+++|+|++++.++..+.. .+| +++++.++.
T Consensus 214 ~~~~~~~dvA~~~~~l~s~~~~~~tG-----------~~~~vdgG~ 248 (253)
T 1hxh_A 214 GRAYMPERIAQLVLFLASDESSVMSG-----------SELHADNSI 248 (253)
T ss_dssp CCEECHHHHHHHHHHHHSGGGTTCCS-----------CEEEESSSC
T ss_pred CCCCCHHHHHHHHHHHcCccccCCCC-----------cEEEECCCc
Confidence 3478999999999999876532 233 899998874
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-23 Score=198.12 Aligned_cols=220 Identities=18% Similarity=0.121 Sum_probs=165.1
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..++|+||||||+|+||++++++|+++|++|++++|..+.... ...+.+|++|.+++.++++.+
T Consensus 25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~--------------~~~~~~Dv~~~~~~~~~~~~~~~ 90 (266)
T 3uxy_A 25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAA--------------DLHLPGDLREAAYADGLPGAVAA 90 (266)
T ss_dssp -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCC--------------SEECCCCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHh--------------hhccCcCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999996543321 234578999999988887643
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ....++.+..+++|+.|+.++++++ ++.+.. +||++||...+...
T Consensus 91 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~~~--------- 160 (266)
T 3uxy_A 91 GLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGG-AIVNVASCWGLRPG--------- 160 (266)
T ss_dssp HHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSBTTBCC---------
T ss_pred hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECCHHhCCCC---------
Confidence 67999999998543 2344566788999999999999987 455543 99999998865321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC-----CCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR-----PDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++... ...........+....+
T Consensus 161 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p---------- 227 (266)
T 3uxy_A 161 ---PGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVP---------- 227 (266)
T ss_dssp ---TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTST----------
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcCC----------
Confidence 456789999999999999988775 899999999999987311 00111112233333222
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
...+.+++|+|++++.++..... .+| +++++.++..++
T Consensus 228 --~~r~~~pedvA~~v~~L~s~~~~~itG-----------~~i~vdGG~~~s 266 (266)
T 3uxy_A 228 --LGRIAEPEDIADVVLFLASDAARYLCG-----------SLVEVNGGKAVA 266 (266)
T ss_dssp --TSSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTCCCC
T ss_pred --CCCCcCHHHHHHHHHHHhCchhcCCcC-----------CEEEECcCEeCC
Confidence 23578899999999999876543 333 899999987653
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.3e-23 Score=196.29 Aligned_cols=213 Identities=10% Similarity=0.020 Sum_probs=149.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..++....... ...++.++.+|++|+++++++++.+
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEA---AGGRIVARSLDARNEDEVTAFLNAADAH 81 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEECcCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999976544333222221 1347899999999999999988754
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ..+.++.+..+++|+.++..+++++ ++.+. ++||++||...+.+.
T Consensus 82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~----------- 149 (252)
T 3h7a_A 82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQ-GKIFFTGATASLRGG----------- 149 (252)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEEGGGTCCC-----------
T ss_pred CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECCHHHcCCC-----------
Confidence 78999999997543 3345566789999999999988876 34444 399999998765322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcE-EEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLAL-TGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~-~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.++ |+++ ++++||.|..+..... ....... . ....... +
T Consensus 150 -~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~~--~~~~~~~---------~---~~~~~~~-~ 213 (252)
T 3h7a_A 150 -SGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRER--REQMFGK---------D---ALANPDL-L 213 (252)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC------------------------------------------
T ss_pred -CCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhcc--chhhhhh---------h---hhcCCcc-C
Confidence 456789999999999999988775 7999 8999999988743211 0001000 1 0112223 8
Q ss_pred eeHHHHHHHHHHHHhhcCcC
Q 011841 340 TYIDDVVKGCVGALDTAGKS 359 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~ 359 (476)
..++|+|++++.++..+...
T Consensus 214 ~~pedvA~~~~~l~s~~~~~ 233 (252)
T 3h7a_A 214 MPPAAVAGAYWQLYQQPKSA 233 (252)
T ss_dssp CCHHHHHHHHHHHHHCCGGG
T ss_pred CCHHHHHHHHHHHHhCchhc
Confidence 89999999999999865543
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=198.63 Aligned_cols=226 Identities=16% Similarity=0.099 Sum_probs=162.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+|+||+++++.|+++|++|++++|+.+.. ....... ....++.++.+|++|+++++++++.+
T Consensus 19 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 94 (267)
T 1vl8_A 19 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEA----SEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVK 94 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999954321 1111111 11346889999999999999888743
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccc-cCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSV-YGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~v-yg~~~~~~~~E 259 (476)
++|+||||||.... ....++.+..+++|+.++.++++++. +.+. ++||++||.++ +..
T Consensus 95 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~-------- 165 (267)
T 1vl8_A 95 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDN-PSIINIGSLTVEEVT-------- 165 (267)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSS-CEEEEECCGGGTCCC--------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEECCcchhccC--------
Confidence 67999999997542 22344566789999999999988763 3444 49999999873 211
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..............+....++
T Consensus 166 ----~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 229 (267)
T 1vl8_A 166 ----MPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPL------------ 229 (267)
T ss_dssp ----SSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTT------------
T ss_pred ----CCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccccChHHHHHHHhhCCC------------
Confidence 1355789999999999999988764 899999999999887422100001122222222221
Q ss_pred EeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..++.++|+|++++.++.... ..+| +++++.++.
T Consensus 230 ~~~~~p~dvA~~v~~l~s~~~~~itG-----------~~i~vdGG~ 264 (267)
T 1vl8_A 230 GRTGVPEDLKGVAVFLASEEAKYVTG-----------QIIFVDGGW 264 (267)
T ss_dssp SSCBCGGGGHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHcCccccCCcC-----------CeEEECCCC
Confidence 236789999999999987643 2233 889998874
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-23 Score=204.41 Aligned_cols=233 Identities=9% Similarity=0.029 Sum_probs=169.8
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
+.++|+||||||+|+||++++++|+++|++|++++|+.+...+....... ....++.++.+|++|+++++++++.+
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 101 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAG--ATGRRCLPLSMDVRAPPAVMAAVDQALK 101 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH--HHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH--hcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999954322221111111 12457999999999999999888754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+. .+||++||...+...
T Consensus 102 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~--------- 171 (277)
T 4fc7_A 102 EFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHG-GVIVNITATLGNRGQ--------- 171 (277)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECCSHHHHTC---------
T ss_pred HcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CEEEEECchhhCCCC---------
Confidence 68999999996432 33455677899999999999999874 2333 389999998765322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC-CcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ..............++ .
T Consensus 172 ---~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~------------~ 236 (277)
T 4fc7_A 172 ---ALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPL------------Q 236 (277)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTSTT------------S
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCCC------------C
Confidence 345789999999999999988775 89999999999998731000 0001222333333322 2
Q ss_pred eceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcccH
Q 011841 338 DFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVPV 385 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt~ 385 (476)
.+..++|+|++++.++.... ..+| +++++.++..+++
T Consensus 237 r~~~p~dvA~~v~fL~s~~~~~itG-----------~~i~vdGG~~~~~ 274 (277)
T 4fc7_A 237 RLGNKTEIAHSVLYLASPLASYVTG-----------AVLVADGGAWLTF 274 (277)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTHHHHC
T ss_pred CCcCHHHHHHHHHHHcCCccCCcCC-----------CEEEECCCcccCC
Confidence 36789999999999987543 2333 8999998865544
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=198.08 Aligned_cols=228 Identities=13% Similarity=0.073 Sum_probs=168.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..++....... ...++.++.+|++|+++++++++.+
T Consensus 30 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 106 (276)
T 3r1i_A 30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAG---VGGKALPIRCDVTQPDQVRGMLDQMTGE 106 (276)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999966543322222211 2347889999999999999988754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++.. .+...+||++||.+.+....
T Consensus 107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~--------- 177 (276)
T 3r1i_A 107 LGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINI--------- 177 (276)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCC---------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCC---------
Confidence 67999999998543 223455667889999999999988643 33324899999987653221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
..+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++..... ..+...+....++ ..+
T Consensus 178 -~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~---~~~~~~~~~~~p~------------~r~ 241 (276)
T 3r1i_A 178 -PQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL---ADYHALWEPKIPL------------GRM 241 (276)
T ss_dssp -SSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG---GGGHHHHGGGSTT------------SSC
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc---hHHHHHHHhcCCC------------CCC
Confidence 134578999999999999999877 489999999999998854321 1122222222222 236
Q ss_pred eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..++|+|++++.++.... ..+| +++++.++..
T Consensus 242 ~~pedvA~~v~fL~s~~~~~itG-----------~~i~vdGG~~ 274 (276)
T 3r1i_A 242 GRPEELTGLYLYLASAASSYMTG-----------SDIVIDGGYT 274 (276)
T ss_dssp BCGGGSHHHHHHHHSGGGTTCCS-----------CEEEESTTTT
T ss_pred cCHHHHHHHHHHHcCccccCccC-----------cEEEECcCcc
Confidence 788999999999887643 2333 8999988754
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-23 Score=197.13 Aligned_cols=229 Identities=14% Similarity=0.023 Sum_probs=163.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
+|+||||||+|+||++++++|+++|++|++++|+.+. ........... ...++.++.+|++|+++++++++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQE--EQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKL 79 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGH--HHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcch--HHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999999985432 00111111111 1347899999999999999888743
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.. .+..++||++||...+.+.
T Consensus 80 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 148 (258)
T 3a28_C 80 GGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGF----------- 148 (258)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCC-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCC-----------
Confidence 67999999997532 224456678999999999999988754 3542499999998765321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC---------CcHHHHHHHHHcCCceEEEeeCC
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD---------MAYFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~---------~~~~~~~~~~~~g~~~~~~~~~~ 331 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .....+...+....+
T Consensus 149 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------- 219 (258)
T 3a28_C 149 -PILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIA-------- 219 (258)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCT--------
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCC--------
Confidence 345789999999999999988764 89999999999987621100 000011111111111
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
...+.+++|+|++++.++..+. ..+| +++++.++..+
T Consensus 220 ----~~r~~~p~dvA~~v~~l~s~~~~~~tG-----------~~i~vdGG~~~ 257 (258)
T 3a28_C 220 ----LGRPSVPEDVAGLVSFLASENSNYVTG-----------QVMLVDGGMLY 257 (258)
T ss_dssp ----TSSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESSSSCC
T ss_pred ----CCCccCHHHHHHHHHHHhCcccCCCCC-----------CEEEECCCEec
Confidence 1247899999999999987643 2233 89999887543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-22 Score=193.50 Aligned_cols=231 Identities=11% Similarity=0.063 Sum_probs=171.0
Q ss_pred CCCCEEEEECCCCh--hhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGF--VGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~--IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+|+ ||++++++|+++|++|++++|.... .+...+.. ......++.++.+|++|.++++++++.+
T Consensus 5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERL-EKSVHELA-GTLDRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHHHH-HTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHH-HHHHHHHH-HhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 56789999999987 9999999999999999999986321 11111111 1122237999999999999999988754
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||.... +...++.+..+++|+.++.++++++..... .++||++||.+.+...
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------- 155 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVM------- 155 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCC-------
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccC-------
Confidence 68999999997541 233455667899999999999999876533 2489999998865322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
+....|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+...+....+.
T Consensus 156 -----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~------------ 218 (266)
T 3oig_A 156 -----PNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPL------------ 218 (266)
T ss_dssp -----TTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTT------------
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccccchHHHHHHHHhcCCC------------
Confidence 456789999999999999988775 799999999999987544332333344444333222
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..+..++|+|++++.++..... .+| +++++.++...
T Consensus 219 ~~~~~p~dva~~v~~l~s~~~~~~tG-----------~~i~vdGG~~~ 255 (266)
T 3oig_A 219 RRTTTPEEVGDTAAFLFSDMSRGITG-----------ENLHVDSGFHI 255 (266)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGG
T ss_pred CCCCCHHHHHHHHHHHcCCchhcCcC-----------CEEEECCCeEE
Confidence 2367899999999999976432 333 89999887543
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=195.76 Aligned_cols=233 Identities=16% Similarity=0.077 Sum_probs=163.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ...... +..++.++.+|++|+++++++++.+
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~---~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESG----GRALEQ---ELPGAVFILCDVTQEDDVKTLVSETIRR 79 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHH---HCTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHH---HhcCCeEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999984321 111111 1235889999999999999888754
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS---VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~---~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.. .+. ++||++||...+...
T Consensus 80 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 148 (270)
T 1yde_A 80 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIGQ---------- 148 (270)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCHHHHHCC----------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEcCccccCCC----------
Confidence 67999999997432 223345678999999999999998753 122 499999997643211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCC----CCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRP----DMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.....|+.+|.+.+.+++.++.+ +|+++++||||.|+++.... ...............++
T Consensus 149 --~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~----------- 215 (270)
T 1yde_A 149 --AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPL----------- 215 (270)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTT-----------
T ss_pred --CCCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcCCC-----------
Confidence 34568999999999999998866 48999999999999873110 00000011111111111
Q ss_pred eEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHH
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSI 391 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~ 391 (476)
..+..++|+|++++.++......+| +++++.++..+.+...+..
T Consensus 216 -~r~~~p~dva~~v~~L~s~~~~itG-----------~~i~vdGG~~~~~~~~~~~ 259 (270)
T 1yde_A 216 -GRMGQPAEVGAAAVFLASEANFCTG-----------IELLVTGGAELGYGCKASR 259 (270)
T ss_dssp -SSCBCHHHHHHHHHHHHHHCTTCCS-----------CEEEESTTTTSCC------
T ss_pred -CCCcCHHHHHHHHHHHcccCCCcCC-----------CEEEECCCeecccCcCccc
Confidence 2367899999999998876433343 8999999877766554443
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-23 Score=204.64 Aligned_cols=232 Identities=15% Similarity=0.082 Sum_probs=168.3
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..++|+||||||+|+||++++++|+++|++|++++|..+. .......... ....++.++.+|++|+++++++++.+
T Consensus 46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 123 (294)
T 3r3s_A 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEE--EDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAR 123 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGH--HHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcch--hHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999885321 1111111111 12357899999999999998888643
Q ss_pred ----CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++..... ..+||++||...+...
T Consensus 124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~---------- 193 (294)
T 3r3s_A 124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPS---------- 193 (294)
T ss_dssp HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCC----------
T ss_pred HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCC----------
Confidence 67999999997432 234556678999999999999999876542 2489999999887532
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..............+. .......+
T Consensus 194 --~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~------------~~~p~~r~ 259 (294)
T 3r3s_A 194 --PHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFG------------QQTPMKRA 259 (294)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTTSCGGGSTTTT------------TTSTTSSC
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccCCCHHHHHHHH------------hcCCCCCC
Confidence 456789999999999999998776 8999999999999873110000000111111 11223347
Q ss_pred eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 340 TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..++|+|++++.++.... ..+| +++++.+|..+
T Consensus 260 ~~p~dvA~~v~~L~s~~~~~itG-----------~~i~vdGG~~l 293 (294)
T 3r3s_A 260 GQPAELAPVYVYLASQESSYVTA-----------EVHGVCGGEHL 293 (294)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCS-----------CEEEESTTCCC
T ss_pred cCHHHHHHHHHHHhCccccCCCC-----------CEEEECCCccC
Confidence 788999999999886543 2333 99999988654
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-23 Score=201.53 Aligned_cols=227 Identities=14% Similarity=0.096 Sum_probs=164.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CC---ceEEEEeecCCHHHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KH---QVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~---~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. .......... .. ++.++.+|++|+++++++++.
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSER----LEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINS 79 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999995432 1112122111 12 689999999999999988875
Q ss_pred C-----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCC
Q 011841 192 V-----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQ 254 (476)
Q Consensus 192 ~-----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~ 254 (476)
+ ++|+||||||.... +...++.+..+++|+.++.++++++.. .+ ++||++||...+...
T Consensus 80 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~-- 155 (280)
T 1xkq_A 80 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSSIVAGPQA-- 155 (280)
T ss_dssp HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGSSSC--
T ss_pred HHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecCccccCCC--
Confidence 3 67999999997432 223455678899999999999998754 33 499999998876432
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC-c------HHHHHHHHHcCCce
Q 011841 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM-A------YFFFTKDILQGKTI 324 (476)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~-~------~~~~~~~~~~g~~~ 324 (476)
..+...|+.+|.+.+.+++.++.+ +|+++++|+||.|+++...... . ...+...+....
T Consensus 156 ---------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 224 (280)
T 1xkq_A 156 ---------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECI-- 224 (280)
T ss_dssp ---------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTC--
T ss_pred ---------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCcccccccccccccchHHHHHHHHcCC--
Confidence 034568999999999999998865 4899999999999998422110 0 011112111111
Q ss_pred EEEeeCCCCceeEeceeHHHHHHHHHHHHhhc-C-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 325 DVYKTQDDREVARDFTYIDDVVKGCVGALDTA-G-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 325 ~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~-~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
....+.+++|+|++++.++..+ . ..+| +++++.++..
T Consensus 225 ----------p~~~~~~pedvA~~v~~l~s~~~~~~~tG-----------~~i~vdgG~~ 263 (280)
T 1xkq_A 225 ----------PIGAAGKPEHIANIILFLADRNLSFYILG-----------QSIVADGGTS 263 (280)
T ss_dssp ----------TTSSCBCHHHHHHHHHHHHCHHHHTTCCS-----------CEEEESTTGG
T ss_pred ----------CCCCCCCHHHHHHHHHHhcCcccccCccC-----------CeEEECCCcc
Confidence 1124789999999999998664 2 2333 8999988754
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-23 Score=195.22 Aligned_cols=201 Identities=12% Similarity=0.048 Sum_probs=148.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
++|+||||||+|+||++++++|+++| ++|++++|+.+..+ .. ... ...++.++.+|++|.++++++++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~----~l-~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT----EL-KSI-KDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH----HH-HTC-CCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHH----HH-Hhc-cCCceEEEEeecCCHHHHHHHHHHHHH
Confidence 46799999999999999999999999 99999999654331 11 111 3457999999999999999888743
Q ss_pred -----CccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHHhc----------C-----CCCeEEEecCcc
Q 011841 193 -----PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKSV----------N-----PQPSIVWASSSS 247 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~~~----------~-----~~~~~V~~SS~~ 247 (476)
++|+||||||... .....++.+..+++|+.++.++++++... + . ++||++||..
T Consensus 76 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~iv~isS~~ 154 (250)
T 1yo6_A 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSR-AAVITISSGL 154 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTT-CEEEEECCGG
T ss_pred hcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCC-cEEEEeccCc
Confidence 5799999999755 12234556788999999999999887542 3 3 4999999987
Q ss_pred ccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCce
Q 011841 248 VYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTI 324 (476)
Q Consensus 248 vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~ 324 (476)
.+..... +++ ...+...|+.+|.+.+.+++.++.++ |+++++||||.|.++....
T Consensus 155 ~~~~~~~----~~~-~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----------------- 212 (250)
T 1yo6_A 155 GSITDNT----SGS-AQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK----------------- 212 (250)
T ss_dssp GCSTTCC----STT-SSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC------------------------
T ss_pred cccCCcc----ccc-ccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCCceecCCCCC-----------------
Confidence 6543211 111 11456789999999999999988775 8999999999998763210
Q ss_pred EEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 325 DVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 325 ~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
..+++++|+|+.++.++.....
T Consensus 213 ------------~~~~~~~~~a~~~~~~~~~~~~ 234 (250)
T 1yo6_A 213 ------------NAALTVEQSTAELISSFNKLDN 234 (250)
T ss_dssp ------------------HHHHHHHHHHHTTCCG
T ss_pred ------------CCCCCHHHHHHHHHHHHhcccc
Confidence 1256789999999999987653
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=9.8e-24 Score=204.27 Aligned_cols=229 Identities=16% Similarity=0.087 Sum_probs=162.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc---CCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. .......... ..++.++.+|++|+++++++++.+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 80 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEA----GVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKV 80 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHH
Confidence 567899999999999999999999999999999985321 1111111111 346899999999999999888764
Q ss_pred -----CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHH----HHHhcC--CCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE----VCKSVN--PQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~----~a~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||... .++.+..+++|+.++..+.+ .+++.+ ..++||++||.+.+...
T Consensus 81 ~~~~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 147 (267)
T 2gdz_A 81 VDHFGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV--------- 147 (267)
T ss_dssp HHHHSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC---------
T ss_pred HHHcCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC---------
Confidence 6799999999743 46678899999997665554 444432 12489999998876432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHH--H---HhCCcEEEEeeCcccCCCCCCCCcHHH------HHHHHHcCCceEEEeeC
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYN--H---IYGLALTGLRFFTVYGPWGRPDMAYFF------FTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~--~---~~gi~~~ilRp~~v~G~~~~~~~~~~~------~~~~~~~g~~~~~~~~~ 330 (476)
.+...|+.+|.+.+.+++.++ . ..|+++++|+||.|.++.......... +...+. .
T Consensus 148 ---~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~--~-------- 214 (267)
T 2gdz_A 148 ---AQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIK--D-------- 214 (267)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHH--H--------
T ss_pred ---CCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhccccccccchhhhHHHHHH--H--------
Confidence 345689999999999988742 2 358999999999998862110000000 000000 0
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHH
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRL 388 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el 388 (476)
......+++++|+|++++.++..+.. +| +++++.+++.+++.|+
T Consensus 215 --~~~~~~~~~~~dvA~~v~~l~s~~~~-~G-----------~~~~v~gg~~~~~~~~ 258 (267)
T 2gdz_A 215 --MIKYYGILDPPLIANGLITLIEDDAL-NG-----------AIMKITTSKGIHFQDY 258 (267)
T ss_dssp --HHHHHCCBCHHHHHHHHHHHHHCTTC-SS-----------CEEEEETTTEEEECCC
T ss_pred --HhccccCCCHHHHHHHHHHHhcCcCC-CC-----------cEEEecCCCcccccCc
Confidence 01123478999999999999987543 33 8999999888777654
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=200.85 Aligned_cols=234 Identities=11% Similarity=0.054 Sum_probs=161.2
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..++|+||||||+|+||++++++|+++|++|++++|.....+ .......... ...++.++.+|++|+++++++++.+
T Consensus 8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 8 DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSD-TANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHH-HHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHH-HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999999999999987432211 1122222221 1347899999999999999988754
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++...- ..++||++||...+...
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~----------- 155 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYT----------- 155 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHH-----------
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCC-----------
Confidence 67999999997533 23445567789999999999999987641 12389999998766432
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|..+..... ......... ........+.
T Consensus 156 -~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~----------~~~~~~~~~---~~~~~~~r~~ 221 (262)
T 3ksu_A 156 -GFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFFYGQ----------ETKESTAFH---KSQAMGNQLT 221 (262)
T ss_dssp -CCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHHHTC----------C---------------CCCCSC
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcccccc----------CchHHHHHH---HhcCcccCCC
Confidence 345679999999999999999886 79999999999977521100 000000001 1112233578
Q ss_pred eHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccH
Q 011841 341 YIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPV 385 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~ 385 (476)
.++|+|++++.++......+| +++++.++.....
T Consensus 222 ~pedvA~~v~~L~s~~~~itG-----------~~i~vdGg~~~~~ 255 (262)
T 3ksu_A 222 KIEDIAPIIKFLTTDGWWING-----------QTIFANGGYTTRE 255 (262)
T ss_dssp CGGGTHHHHHHHHTTTTTCCS-----------CEEEESTTCCCC-
T ss_pred CHHHHHHHHHHHcCCCCCccC-----------CEEEECCCccCCC
Confidence 899999999999876333333 8999988765444
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=192.46 Aligned_cols=225 Identities=13% Similarity=0.083 Sum_probs=158.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.. +........ ...++.++.+|++|+++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~---~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA---PEAEAAIRN--LGRRVLTVKCDVSQPGDVEAFGKQVIST 79 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC---HHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCch---hHHHHHHHh--cCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999651 111111111 1347899999999999998887642
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.++.+++++ +++.+.. +||++||...+...
T Consensus 80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~---------- 148 (249)
T 2ew8_A 80 FGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWG-RIINLTSTTYWLKI---------- 148 (249)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGGSCC----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCe-EEEEEcchhhccCC----------
Confidence 67999999997532 233455677899999998888877 4455544 99999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
++...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ..... ......- . .....+
T Consensus 149 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-~~~~~-~~~~~~~-~---------~~~~~~ 214 (249)
T 2ew8_A 149 --EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEAS-ALSAM-FDVLPNM-L---------QAIPRL 214 (249)
T ss_dssp --SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC--------------------CT-T---------SSSCSC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhc-cccch-hhHHHHh-h---------CccCCC
Confidence 356789999999999999988774 89999999999998743200 00000 0000000 0 111347
Q ss_pred eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 340 TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+++|+|++++.++..+. ..+| +++++.++.
T Consensus 215 ~~p~dva~~~~~l~s~~~~~~tG-----------~~~~vdGG~ 246 (249)
T 2ew8_A 215 QVPLDLTGAAAFLASDDASFITG-----------QTLAVDGGM 246 (249)
T ss_dssp CCTHHHHHHHHHHTSGGGTTCCS-----------CEEEESSSC
T ss_pred CCHHHHHHHHHHHcCcccCCCCC-----------cEEEECCCc
Confidence 899999999999987543 2233 889998874
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-23 Score=196.11 Aligned_cols=229 Identities=15% Similarity=0.075 Sum_probs=165.7
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
...+|+||||||+|+||++++++|+++|++|+++++............. .....++.++.+|++|.++++++++..
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQ--KALGFDFYASEGNVGDWDSTKQAFDKVKA 87 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHH--HHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH--HhcCCeeEEEecCCCCHHHHHHHHHHHHH
Confidence 3677899999999999999999999999999999854432211111111 112347899999999999999888754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++ ++.+.. +||++||...+...
T Consensus 88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~--------- 157 (256)
T 3ezl_A 88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWG-RIINISSVNGQKGQ--------- 157 (256)
T ss_dssp HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCCCGGGSC---------
T ss_pred hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcchhhccCC---------
Confidence 68999999997542 2344566789999999988887765 445543 99999998765322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++++||.|.++.... ....+...+....++ ..
T Consensus 158 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~------------~~ 220 (256)
T 3ezl_A 158 ---FGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA--IRPDVLEKIVATIPV------------RR 220 (256)
T ss_dssp ---SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--SCHHHHHHHHHHSTT------------SS
T ss_pred ---CCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccc--cCHHHHHHHHhcCCC------------CC
Confidence 45678999999999999988877 48999999999998873221 112333333333222 23
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
+..++|+|++++.++.... ..+| +++++.++..+
T Consensus 221 ~~~~~dva~~~~~l~s~~~~~~tG-----------~~i~vdgG~~~ 255 (256)
T 3ezl_A 221 LGSPDEIGSIVAWLASEESGFSTG-----------ADFSLNGGLHM 255 (256)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTSCC
T ss_pred CcCHHHHHHHHHHHhCCcccCCcC-----------cEEEECCCEeC
Confidence 6789999999999886543 2233 89999887643
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-22 Score=195.29 Aligned_cols=210 Identities=16% Similarity=0.100 Sum_probs=156.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+|+||||||+|+||++++++|+++|++|++++|+.+ ..+.....++.++.+|++|.++++++++.+
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~---------~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 84 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVE---------RLKALNLPNTLCAQVDVTDKYTFDTAITRAEKI 84 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHH---------HHHTTCCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHH---------HHHHhhcCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998421 122233447899999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.|+.++++++ ++.+.. +||++||.+.+...
T Consensus 85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g-~IV~isS~~~~~~~---------- 153 (266)
T 3p19_A 85 YGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCG-TIINISSIAGKKTF---------- 153 (266)
T ss_dssp HCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCC----------
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEcChhhCCCC----------
Confidence 67999999997532 2234556678999999999977765 345554 99999998876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++....... ........... . ....+
T Consensus 154 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~-~~~~~~~~~~~-~----------~~~r~ 219 (266)
T 3p19_A 154 --PDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTTS-QQIKDGYDAWR-V----------DMGGV 219 (266)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCSC-HHHHHHHHHHH-H----------HTTCC
T ss_pred --CCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhcccc-hhhhHHHHhhc-c----------cccCC
Confidence 45678999999999999998877 48999999999999885332111 11111111000 0 11237
Q ss_pred eeHHHHHHHHHHHHhhcCcC
Q 011841 340 TYIDDVVKGCVGALDTAGKS 359 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~ 359 (476)
++++|+|++++.++.++...
T Consensus 220 ~~pedvA~av~~l~~~~~~~ 239 (266)
T 3p19_A 220 LAADDVARAVLFAYQQPQNV 239 (266)
T ss_dssp BCHHHHHHHHHHHHHSCTTE
T ss_pred CCHHHHHHHHHHHHcCCCCc
Confidence 88999999999999887653
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-23 Score=197.27 Aligned_cols=223 Identities=14% Similarity=0.116 Sum_probs=161.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|..+ +..... ..++.++.+|++|.++++++++..
T Consensus 7 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~-------~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (257)
T 3tl3_A 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE-------DVVADL--GDRARFAAADVTDEAAVASALDLAETM 77 (257)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH-------HHHHHT--CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH-------HHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999998321 111111 347999999999999999888743
Q ss_pred -CccEEEEccccCChh--------hhhcChHHHHHHHHHHHHHHHHHHHhc-----------CCCCeEEEecCccccCCC
Q 011841 193 -PFTHVLHLAAQAGVR--------YAMQNPQSYVASNIAGFVNLLEVCKSV-----------NPQPSIVWASSSSVYGLN 252 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~~--------~~~~~~~~~~~~nv~gt~~ll~~a~~~-----------~~~~~~V~~SS~~vyg~~ 252 (476)
++|+||||||..... .+.++.+..+++|+.++.++++++... ....+||++||...+...
T Consensus 78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 157 (257)
T 3tl3_A 78 GTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQ 157 (257)
T ss_dssp SCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCH
T ss_pred CCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCC
Confidence 679999999975321 344567789999999999999987642 222489999998865322
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEee
Q 011841 253 TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKT 329 (476)
Q Consensus 253 ~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~ 329 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .......+....+.
T Consensus 158 ------------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~----- 218 (257)
T 3tl3_A 158 ------------IGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFDTPLLASL--PEEARASLGKQVPH----- 218 (257)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTC-----CHHHHHHHHHTSSS-----
T ss_pred ------------CCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCccChhhhhc--cHHHHHHHHhcCCC-----
Confidence 345689999999999999988774 89999999999998854321 12222333322221
Q ss_pred CCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 330 QDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
...+.+++|+|++++.++.++ ..+| +++++.++..+.
T Consensus 219 ------~~r~~~p~dva~~v~~l~s~~-~itG-----------~~i~vdGG~~~~ 255 (257)
T 3tl3_A 219 ------PSRLGNPDEYGALAVHIIENP-MLNG-----------EVIRLDGAIRMA 255 (257)
T ss_dssp ------SCSCBCHHHHHHHHHHHHHCT-TCCS-----------CEEEESTTC---
T ss_pred ------CCCccCHHHHHHHHHHHhcCC-CCCC-----------CEEEECCCccCC
Confidence 024788999999999999763 3333 999999886544
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=198.35 Aligned_cols=234 Identities=15% Similarity=0.106 Sum_probs=168.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC------------CchHHHHHHhhh-cCCceEEEEeecCCH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY------------DPSLKRARQKLL-QKHQVFIVEGDLNDA 182 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~------------~~~~~~~~~~~~-~~~~v~~~~~Dl~d~ 182 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.... .+.......... ...++.++.+|++|+
T Consensus 9 l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 88 (286)
T 3uve_A 9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY 88 (286)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence 5789999999999999999999999999999999873221 112222222211 235799999999999
Q ss_pred HHHHHhhccC-----CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccc
Q 011841 183 PLLTKLFDVV-----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSV 248 (476)
Q Consensus 183 ~~l~~~~~~~-----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~v 248 (476)
++++++++.+ ++|+||||||.... ..+.++.+..+++|+.++.++++++.. .+...+||++||...
T Consensus 89 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 168 (286)
T 3uve_A 89 DALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVGG 168 (286)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchhh
Confidence 9999888743 67999999997433 224556678999999999999988643 232348999999887
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHH-----------
Q 011841 249 YGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFF----------- 314 (476)
Q Consensus 249 yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~----------- 314 (476)
+... .....|+.+|.+.+.+++.++.+ +|+++++|+||.|.++..........+
T Consensus 169 ~~~~------------~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~ 236 (286)
T 3uve_A 169 LKAY------------PHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDD 236 (286)
T ss_dssp TSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHHHHHCTTSSSCCHHH
T ss_pred ccCC------------CCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchhhhccccccccchhh
Confidence 6332 45678999999999999998877 489999999999999854321110000
Q ss_pred -HHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 315 -TKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 315 -~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
........ ... ..+.+++|+|++++.++.... ..+| +++++.++..+
T Consensus 237 ~~~~~~~~~----------~~p-~r~~~p~dvA~~v~fL~s~~a~~itG-----------~~i~vdGG~~l 285 (286)
T 3uve_A 237 MAPICQMFH----------TLP-IPWVEPIDISNAVLFFASDEARYITG-----------VTLPIDAGSCL 285 (286)
T ss_dssp HHHHHHTTC----------SSS-CSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGG
T ss_pred HHHHHHhhh----------ccC-CCcCCHHHHHHHHHHHcCccccCCcC-----------CEEeECCcccc
Confidence 00000111 111 457899999999999886543 3333 89999987543
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-23 Score=201.39 Aligned_cols=233 Identities=17% Similarity=0.088 Sum_probs=166.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..+++||||||+|+||++++++|+++|++|++++|+.+. ......... ...++.++.+|++|+++++++++.+
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (283)
T 3v8b_A 26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTE----VEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVL 101 (283)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999995432 122222221 2347899999999999999888754
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... +...++.+..+++|+.++.++++++ ++.+.. +||++||.+.+...
T Consensus 102 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~Iv~isS~~~~~~~-------- 172 (283)
T 3v8b_A 102 KFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGG-AIVVVSSINGTRTF-------- 172 (283)
T ss_dssp HHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSBTTTBC--------
T ss_pred HhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-eEEEEcChhhccCC--------
Confidence 68999999997432 3344566789999999999999987 455543 99999998765311
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee-
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA- 336 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~- 336 (476)
...+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++........... ....+.... ......
T Consensus 173 --~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~----~~~~~~~~~---~~~~p~~ 243 (283)
T 3v8b_A 173 --TTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTKLRHEE----ETAIPVEWP---KGQVPIT 243 (283)
T ss_dssp --CSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTTBCCHH----HHSCCCBCT---TCSCGGG
T ss_pred --CCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccccccch----hhhhhhhhh---hhcCccc
Confidence 11456789999999999999998874 79999999999998854322110000 000011100 011111
Q ss_pred -EeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 -RDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 -~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++.... ..+| +++++.+|.
T Consensus 244 ~~r~~~pedvA~~v~fL~s~~a~~itG-----------~~i~vdGG~ 279 (283)
T 3v8b_A 244 DGQPGRSEDVAELIRFLVSERARHVTG-----------SPVWIDGGQ 279 (283)
T ss_dssp TTCCBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTH
T ss_pred cCCCCCHHHHHHHHHHHcCccccCCcC-----------CEEEECcCc
Confidence 346789999999999886543 2333 899998874
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=194.58 Aligned_cols=219 Identities=16% Similarity=0.121 Sum_probs=159.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH-HHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA-PLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~~~- 192 (476)
.++|+|+||||+|+||++++++|+++|++ |++++|+... +...... ......++.++.+|++|+ ++++++++..
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELK-AINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHH-HHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHH-HhCCCceEEEEEEecCCChHHHHHHHHHHH
Confidence 46789999999999999999999999997 9999986531 1122221 112234789999999998 8888877643
Q ss_pred ----CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCC------CCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP------QPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~------~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.. ..++.+..+++|+.++.++++++..... .++||++||.+.+...
T Consensus 80 ~~~g~id~lv~~Ag~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 145 (254)
T 1sby_A 80 DQLKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI---------- 145 (254)
T ss_dssp HHHSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC----------
T ss_pred HhcCCCCEEEECCccC----CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCC----------
Confidence 679999999974 3467889999999999999998764211 2379999999876432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC-cH--HHHHHHHHcCCceEEEeeCCCCcee
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM-AY--FFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~-~~--~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.|.+++.++.+ .|+++++|+||.|.++...... .. ...........
T Consensus 146 --~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~-------------- 209 (254)
T 1sby_A 146 --HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSH-------------- 209 (254)
T ss_dssp --TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTS--------------
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCccccccchhhhhhHHHHHHHhcC--------------
Confidence 34578999999999999998876 5899999999999987321100 00 00011111111
Q ss_pred EeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+.+++|+|++++.+++.. .+| ++|++.++.
T Consensus 210 -~~~~~~dvA~~i~~~~~~~--~~G-----------~~~~v~gG~ 240 (254)
T 1sby_A 210 -PTQTSEQCGQNFVKAIEAN--KNG-----------AIWKLDLGT 240 (254)
T ss_dssp -CCEEHHHHHHHHHHHHHHC--CTT-----------CEEEEETTE
T ss_pred -CCCCHHHHHHHHHHHHHcC--CCC-----------CEEEEeCCc
Confidence 2347999999999998742 222 899998873
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.8e-23 Score=197.89 Aligned_cols=212 Identities=14% Similarity=0.103 Sum_probs=151.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+ ....... ....+.++.+|++|+++++++++.+
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~----~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 77 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIE----AIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVD 77 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH----HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHH----HHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999543222 2211111 1347889999999999999888754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.|+..+++++. +.+. ++||++||.+.+...
T Consensus 78 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~IV~isS~~~~~~~--------- 147 (264)
T 3tfo_A 78 TWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRS-GQIINIGSIGALSVV--------- 147 (264)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTCCC---------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-eEEEEEcCHHHcccC---------
Confidence 67999999997543 23445667889999999998888764 3444 399999998876432
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... .......... ......++
T Consensus 148 ---~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~----------~~~~~~~~~~-----~~~~~~~~ 209 (264)
T 3tfo_A 148 ---PTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGT----------ITHEETMAAM-----DTYRAIAL 209 (264)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC--------------------------------------CC
T ss_pred ---CCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCccccc----------ccchhHHHHH-----HhhhccCC
Confidence 455789999999999999998876 8999999999998874221 0000000000 01112257
Q ss_pred eHHHHHHHHHHHHhhcCcC
Q 011841 341 YIDDVVKGCVGALDTAGKS 359 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~~ 359 (476)
.++|+|++++.++..+...
T Consensus 210 ~pedvA~~v~~l~s~~~~~ 228 (264)
T 3tfo_A 210 QPADIARAVRQVIEAPQSV 228 (264)
T ss_dssp CHHHHHHHHHHHHHSCTTE
T ss_pred CHHHHHHHHHHHhcCCccC
Confidence 8999999999999887653
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-22 Score=196.11 Aligned_cols=238 Identities=15% Similarity=0.131 Sum_probs=168.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC---------CCchHHHHHHhh-hcCCceEEEEeecCCHHHH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---------YDPSLKRARQKL-LQKHQVFIVEGDLNDAPLL 185 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~---------~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l 185 (476)
.++|+||||||+|+||++++++|+++|++|++++|.... ............ .....+.++.+|++|.+++
T Consensus 9 l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 88 (277)
T 3tsc_A 9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL 88 (277)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 577999999999999999999999999999999985321 111112211111 1245789999999999999
Q ss_pred HHhhccC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCC
Q 011841 186 TKLFDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLN 252 (476)
Q Consensus 186 ~~~~~~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~ 252 (476)
+++++.+ ++|+||||||.... +.+.++.+..+++|+.++.++++++. +.+...+||++||...+...
T Consensus 89 ~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 168 (277)
T 3tsc_A 89 RKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKMQ 168 (277)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCCC
Confidence 9888753 67999999998543 33456677899999999999988853 33323489999998876332
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCce-EEEe
Q 011841 253 TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTI-DVYK 328 (476)
Q Consensus 253 ~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~-~~~~ 328 (476)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ....+.......... ...
T Consensus 169 ------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~~~~~~~- 234 (277)
T 3tsc_A 169 ------------PFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGD-MVTAVGQAMETNPQLSHVL- 234 (277)
T ss_dssp ------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHH-HHHHHHHHHHTCGGGTTTT-
T ss_pred ------------CCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccch-hhhhhhhcccccHHHHHHh-
Confidence 346789999999999999988775 79999999999998753321 111111111111110 000
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
. ......+.+++|+|++++.++..+.. .+| +++++.++.
T Consensus 235 --~-~~~p~r~~~pedvA~~v~~L~s~~~~~itG-----------~~i~vdGG~ 274 (277)
T 3tsc_A 235 --T-PFLPDWVAEPEDIADTVCWLASDESRKVTA-----------AQIPVDQGS 274 (277)
T ss_dssp --C-CSSSCSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred --h-hccCCCCCCHHHHHHHHHHHhCccccCCcC-----------CEEeeCCCc
Confidence 0 11112488999999999999876543 333 899998874
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=194.25 Aligned_cols=223 Identities=13% Similarity=0.055 Sum_probs=166.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|+++++.+.. ......... ....++.++.+|++|.++++++++..
T Consensus 24 l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~---~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (267)
T 4iiu_A 24 AMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAA---GAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIA 100 (267)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchH---HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 466899999999999999999999999999887653321 111111111 12457999999999999999888753
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH-----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK-----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~-----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+. ++||++||...+.+.
T Consensus 101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 171 (267)
T 4iiu_A 101 QHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQG-GRIITLSSVSGVMGN-------- 171 (267)
T ss_dssp HHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSC-EEEEEECCHHHHHCC--------
T ss_pred HhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-cEEEEEcchHhccCC--------
Confidence 67999999997542 23455677899999999999999863 3343 499999997765322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... ......+....++ .
T Consensus 172 ----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---~~~~~~~~~~~p~------------~ 232 (267)
T 4iiu_A 172 ----RGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME---ESALKEAMSMIPM------------K 232 (267)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC---HHHHHHHHHTCTT------------C
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc---HHHHHHHHhcCCC------------C
Confidence 456789999999999998888775 89999999999999865432 3334444444332 2
Q ss_pred eceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 338 DFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
.+..++|+|++++.++.... ..+| +++++.++
T Consensus 233 ~~~~~edva~~~~~L~s~~~~~itG-----------~~i~vdGG 265 (267)
T 4iiu_A 233 RMGQAEEVAGLASYLMSDIAGYVTR-----------QVISINGG 265 (267)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCCcccCccC-----------CEEEeCCC
Confidence 36789999999999887643 2333 89999876
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=201.43 Aligned_cols=241 Identities=14% Similarity=0.124 Sum_probs=168.5
Q ss_pred CCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC--------CchHHHHHHhh-hcCCceEEEEeecCCHH
Q 011841 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--------DPSLKRARQKL-LQKHQVFIVEGDLNDAP 183 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~--------~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~ 183 (476)
+...++|+||||||+|+||+++++.|+++|++|++++|..... .+......... .....+.++.+|++|++
T Consensus 41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLA 120 (317)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 3446789999999999999999999999999999998863221 11122211111 12457899999999999
Q ss_pred HHHHhhccC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccC
Q 011841 184 LLTKLFDVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYG 250 (476)
Q Consensus 184 ~l~~~~~~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg 250 (476)
+++++++.+ ++|+||||||.... +.+.++.+..+++|+.++.++++++.. .+..++||++||...+.
T Consensus 121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~ 200 (317)
T 3oec_A 121 SLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR 200 (317)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence 999988754 68999999997543 234556778999999999999988743 33234899999988663
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCC--c--
Q 011841 251 LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGK--T-- 323 (476)
Q Consensus 251 ~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~--~-- 323 (476)
.. .+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++..... .+...+.... +
T Consensus 201 ~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~----~~~~~~~~~~~~~~~ 264 (317)
T 3oec_A 201 GA------------PGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNE----KLLKMFLPHLENPTR 264 (317)
T ss_dssp CC------------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCH----HHHHHHCTTCSSCCH
T ss_pred CC------------CCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccch----hhhhhhhhhccccch
Confidence 22 356789999999999999998875 89999999999998732110 0111110000 0
Q ss_pred ---eEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 324 ---IDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 324 ---~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
...+. ........|++++|+|++++.++.... ..+| +++++.+|..
T Consensus 265 ~~~~~~~~--~~~~~p~~~~~pedvA~av~fL~s~~a~~itG-----------~~i~vdGG~~ 314 (317)
T 3oec_A 265 EDAAELFS--QLTLLPIPWVEPEDVSNAVAWLASDEARYIHG-----------AAIPVDGGQL 314 (317)
T ss_dssp HHHHHHHT--TTCSSSSSSBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTGG
T ss_pred hHHHHHHh--hhccCCCCCCCHHHHHHHHHHHcCCcccCCCC-----------CEEEECcchh
Confidence 00000 001112568899999999998886543 2333 8999988754
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=195.15 Aligned_cols=227 Identities=14% Similarity=0.044 Sum_probs=165.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+...... .. ...++.++.+|++|.++++++++..
T Consensus 32 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 108 (279)
T 3ctm_A 32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQ-KT--YGVHSKAYKCNISDPKSVEETISQQEKD 108 (279)
T ss_dssp CTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHH-HH--HCSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-Hh--cCCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999765322211111 11 1347899999999999999888763
Q ss_pred --CccEEEEccccCCh------hhhhcChHHHHHHHHHH----HHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAG----FVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~g----t~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ....++.+..+++|+.+ +..+++.+++.+.. +||++||...+...
T Consensus 109 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~~-------- 179 (279)
T 3ctm_A 109 FGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKG-SLIITSSISGKIVN-------- 179 (279)
T ss_dssp HSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCCTTSCC---------
T ss_pred hCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-eEEEECchHhccCC--------
Confidence 57999999997543 33445567799999999 55666677776664 99999998765321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
...+...|+.+|.+.|.+++.++.++ + ++++|+||.+.++...... ..+...+....+ ..
T Consensus 180 --~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~~--~~~~~~~~~~~p------------~~ 242 (279)
T 3ctm_A 180 --IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFAS--KDMKAKWWQLTP------------LG 242 (279)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSCC--HHHHHHHHHHST------------TC
T ss_pred --CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCccccccccC--hHHHHHHHHhCC------------cc
Confidence 01456789999999999999998774 6 9999999999988543211 122222221111 12
Q ss_pred eceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 338 DFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.+++++|+|++++.++..+.. .+| +++++.++..
T Consensus 243 ~~~~~~dvA~~~~~l~s~~~~~~tG-----------~~i~vdgG~~ 277 (279)
T 3ctm_A 243 REGLTQELVGGYLYLASNASTFTTG-----------SDVVIDGGYT 277 (279)
T ss_dssp SCBCGGGTHHHHHHHHSGGGTTCCS-----------CEEEESTTCC
T ss_pred CCcCHHHHHHHHHHHhCccccCccC-----------CEEEECCCee
Confidence 378899999999999876432 233 8999988754
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-23 Score=205.38 Aligned_cols=227 Identities=17% Similarity=0.021 Sum_probs=150.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+++||||||+|+||.+++++|+++|++|++++|+.+..+........ ......+.++.+|++|.++++++++.+
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEA-EGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-HTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-cCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999965432222221111 111237999999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC---------CCCeEEEecCccccCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN---------PQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~---------~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
++|+||||||.... ..+.++.+..+++|+.|+.++++++.... ..++||++||.+.+...
T Consensus 85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~----- 159 (319)
T 3ioy_A 85 FGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAA----- 159 (319)
T ss_dssp TCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCC-----
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCC-----
Confidence 68999999997432 22345667899999999999998875421 12489999998876432
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++...........+.............. -..
T Consensus 160 -------~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 230 (319)
T 3ioy_A 160 -------GSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIYASDDIRPDALKGEVKPVDKTAVER--LAG 230 (319)
T ss_dssp -------SSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC-------------------------------CC
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcccccccCchhhcccccchhHHHHHH--HHH
Confidence 345689999998888877776553 89999999999998754322111111111110000000000 001
Q ss_pred eeEeceeHHHHHHHHHHHHhhcC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
.....++++|+|+.++.+++.+.
T Consensus 231 ~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 231 VHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp GGGSSBCHHHHHHHHHHHHHTTC
T ss_pred hhhcCCCHHHHHHHHHHHHHcCC
Confidence 11122799999999999998753
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-23 Score=199.66 Aligned_cols=222 Identities=14% Similarity=0.145 Sum_probs=164.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||+++++.|+++|++|++++|+.+. ........ ..++.++.+|++|+++++++++.+
T Consensus 4 l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (247)
T 3rwb_A 4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEG----AKAAAASI--GKKARAIAADISDPGSVKALFAEIQAL 77 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHH----HHHHHHHH--CTTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999985421 11111111 457899999999999999988754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +.+.++.+..+++|+.++.+++++ +++.+...+||++||...+.+.
T Consensus 78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 147 (247)
T 3rwb_A 78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGT---------- 147 (247)
T ss_dssp HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTC----------
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCC----------
Confidence 67999999997533 234456678999999999999887 4455533499999998765432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCC--CCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRP--DMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++.... ......+.... .+ ..
T Consensus 148 --~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~---~~------------~~ 210 (247)
T 3rwb_A 148 --PNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASPHNEAFGFVEML---QA------------MK 210 (247)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHH---SS------------SC
T ss_pred --CCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccChhHHHHHHhcc---cc------------cC
Confidence 45678999999999999998877 48999999999998863211 10111111110 11 12
Q ss_pred eceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+..++|+|++++.++..... .+| +++++.++.
T Consensus 211 r~~~pedva~~v~~L~s~~~~~itG-----------~~i~vdGG~ 244 (247)
T 3rwb_A 211 GKGQPEHIADVVSFLASDDARWITG-----------QTLNVDAGM 244 (247)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTS
T ss_pred CCcCHHHHHHHHHHHhCccccCCCC-----------CEEEECCCc
Confidence 356789999999998876533 333 899998874
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-22 Score=194.69 Aligned_cols=225 Identities=12% Similarity=0.063 Sum_probs=162.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ............++.++.+|++|+++++++++.+
T Consensus 27 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~----~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (276)
T 2b4q_A 27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEA----CADTATRLSAYGDCQAIPADLSSEAGARRLAQALGEL 102 (276)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHH----HHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999985421 1222222222237889999999999998888743
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCC---CeEEEecCccccCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQ---PSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~---~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||.... +...++.+..+++|+.++.++++++. +.+.. ++||++||.+.+...
T Consensus 103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~------- 175 (276)
T 2b4q_A 103 SARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAM------- 175 (276)
T ss_dssp CSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCC-------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCC-------
Confidence 67999999997432 23345567899999999988888764 33431 399999998876432
Q ss_pred CCCCCCCCC-hHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHc--CCceEEEeeCCCC
Q 011841 260 SHRTDQPAS-LYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ--GKTIDVYKTQDDR 333 (476)
Q Consensus 260 ~~~~~~p~~-~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~ 333 (476)
.... .|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... ....+...+.. ..++
T Consensus 176 -----~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~~~p~--------- 239 (276)
T 2b4q_A 176 -----GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRH--IANDPQALEADSASIPM--------- 239 (276)
T ss_dssp -----CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHH--HHHCHHHHHHHHHTSTT---------
T ss_pred -----CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhh--cchhHHHHHHhhcCCCC---------
Confidence 2234 79999999999999988764 8999999999999874321 00001111211 1111
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+.+++|+|++++.++..+. ..+| +++++.++.
T Consensus 240 ---~r~~~p~dvA~~v~~l~s~~~~~~tG-----------~~i~vdGG~ 274 (276)
T 2b4q_A 240 ---GRWGRPEEMAALAISLAGTAGAYMTG-----------NVIPIDGGF 274 (276)
T ss_dssp ---SSCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTT
T ss_pred ---CCcCCHHHHHHHHHHHhCccccCCCC-----------CEEEeCCCc
Confidence 237899999999999987653 2233 899998874
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=193.82 Aligned_cols=224 Identities=17% Similarity=0.122 Sum_probs=162.8
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeec--CCHHHHHHhhccC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL--NDAPLLTKLFDVV 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~l~~~~~~~ 192 (476)
..++|+||||||+|+||++++++|+++|++|++++|+.+..++....... .....+.++.+|+ +|.++++++++.+
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINE--ETGRQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--hcCCCceEEEEecccCCHHHHHHHHHHH
Confidence 36789999999999999999999999999999999954322221111111 1123788999999 9999988888743
Q ss_pred -----CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|+||||||.... ....++.+..+++|+.++.++++++ ++.+. ++||++||...+...
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-g~iv~isS~~~~~~~------ 159 (252)
T 3f1l_A 87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDA-GSLVFTSSSVGRQGR------ 159 (252)
T ss_dssp HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGTSCC------
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC-CEEEEECChhhccCC------
Confidence 68999999997421 2334456678999999999999987 44444 499999998765322
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.+.+++.++.+++ +++++|+||.|..+ +........ ..
T Consensus 160 ------~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~----------~~~~~~~~~------------~~ 211 (252)
T 3f1l_A 160 ------ANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTA----------MRASAFPTE------------DP 211 (252)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSH----------HHHHHCTTC------------CG
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCc----------hhhhhCCcc------------ch
Confidence 4567899999999999999998874 89999999999765 222221111 11
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcccHH
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVPVG 386 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt~~ 386 (476)
..+..++|+|++++.++..... .+| +++++.++...++.
T Consensus 212 ~~~~~p~dva~~~~~L~s~~~~~itG-----------~~i~vdgG~~~~~~ 251 (252)
T 3f1l_A 212 QKLKTPADIMPLYLWLMGDDSRRKTG-----------MTFDAQPGRKPGIS 251 (252)
T ss_dssp GGSBCTGGGHHHHHHHHSGGGTTCCS-----------CEEESSCC------
T ss_pred hccCCHHHHHHHHHHHcCccccCCCC-----------CEEEeCCCcCCCCC
Confidence 2367889999999998876542 333 89999998876654
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=202.55 Aligned_cols=176 Identities=16% Similarity=0.127 Sum_probs=134.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc-hHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP-SLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~-~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+...... ......... ....++.++.+|++|+++++++++.+
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 356899999999999999999999999999999996433222 222222111 12357999999999999999988754
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ..+.++.+..+++|+.|+.++++++ ++.+.. +||++||.+.+...
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g-~iV~isS~~~~~~~-------- 153 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHG-LLIWISSSSSAGGT-------- 153 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC--------
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEecchhccCC--------
Confidence 67999999997432 2344556778999999999999988 555654 99999998876322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCC
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGP 303 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~ 303 (476)
......|+.+|.+.|.+++.++.+ +|+++++|+||.|.++
T Consensus 154 ---~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~ 196 (324)
T 3u9l_A 154 ---PPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSG 196 (324)
T ss_dssp ---CSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC---
T ss_pred ---CCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccC
Confidence 123568999999999999999877 4899999999999865
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=193.70 Aligned_cols=232 Identities=12% Similarity=0.067 Sum_probs=165.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+........ .....++.++.+|++|.++++++++.+
T Consensus 6 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQ-RFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH-HSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHH-hcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999954322221111111 112235899999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++.. .+. .+||++||...+...
T Consensus 85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 153 (265)
T 3lf2_A 85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRAD-AAIVCVNSLLASQPE---------- 153 (265)
T ss_dssp HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT-EEEEEEEEGGGTSCC----------
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-eEEEEECCcccCCCC----------
Confidence 68999999997433 334556678999999999999998743 333 489999998865322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC--------CCcHHHHHHHHHcCCceEEEeeCC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQD 331 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~ 331 (476)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... ......+...+.....
T Consensus 154 --~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 223 (265)
T 3lf2_A 154 --PHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQ-------- 223 (265)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTT--------
T ss_pred --CCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccC--------
Confidence 456789999999999999988775 8999999999998862110 0011111111111110
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.....+..++|+|++++.++.... ..+| +++++.++..
T Consensus 224 --~p~~r~~~pedvA~~v~fL~s~~~~~itG-----------~~i~vdGG~~ 262 (265)
T 3lf2_A 224 --IPLGRLGKPIEAARAILFLASPLSAYTTG-----------SHIDVSGGLS 262 (265)
T ss_dssp --CTTCSCBCHHHHHHHHHHHHSGGGTTCCS-----------EEEEESSSCC
T ss_pred --CCcCCCcCHHHHHHHHHHHhCchhcCcCC-----------CEEEECCCCc
Confidence 111246789999999999887543 2333 8999988753
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-23 Score=199.96 Aligned_cols=215 Identities=16% Similarity=0.086 Sum_probs=152.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc---CCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.++|+||||||+|+||+++++.|+++|++|++++|+.... ......... ...+.++.+|++|+++++++++..
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 105 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNI----EELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAI 105 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHH----HHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHH
Confidence 5678999999999999999999999999999999954321 111111111 235889999999999999888743
Q ss_pred -----CccEEEEccccCCh----hhhhcChHHHHHHHHHH----HHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAG----FVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~g----t~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|+||||||.... ....++.+..+++|+.+ +..+++.+++.+. .++||++||...+...
T Consensus 106 ~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~------ 179 (279)
T 1xg5_A 106 RSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL------ 179 (279)
T ss_dssp HHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC------
T ss_pred HHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccC------
Confidence 57999999997432 22345567889999999 6666777777765 2499999999876421
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
+..+...|+.+|.+.+.+++.++.+ .++++++|+||.|.++... ......+.... ..
T Consensus 180 ----~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~----------~~~~~~~~~~~----~~ 241 (279)
T 1xg5_A 180 ----PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAF----------KLHDKDPEKAA----AT 241 (279)
T ss_dssp ----SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHH----------HHTTTCHHHHH----HH
T ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhh----------hhcccChhHHh----hh
Confidence 1145578999999999998887765 3799999999999887310 00110000000 00
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
.....+++++|+|++++.++..+..
T Consensus 242 ~~~~~~~~~~dvA~~i~~l~~~~~~ 266 (279)
T 1xg5_A 242 YEQMKCLKPEDVAEAVIYVLSTPAH 266 (279)
T ss_dssp HC---CBCHHHHHHHHHHHHHSCTT
T ss_pred cccccCCCHHHHHHHHHHHhcCCcc
Confidence 1123478999999999999987543
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-22 Score=196.29 Aligned_cols=226 Identities=12% Similarity=0.039 Sum_probs=163.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|......+....... ....++.++.+|++|.+++.++++..
T Consensus 27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 104 (271)
T 4iin_A 27 FTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELE--EKGYKAAVIKFDAASESDFIEAIQTIVQS 104 (271)
T ss_dssp CSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH--HTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH--hcCCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999954321111111111 11347999999999999999888743
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+. ++||++||...+.+.
T Consensus 105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 173 (271)
T 4iin_A 105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRF-GSVVNVASIIGERGN---------- 173 (271)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC----------
T ss_pred cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCC-CEEEEEechhhcCCC----------
Confidence 67999999998543 23445667899999999999888764 3344 399999998765322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++..... ...+..... .......+
T Consensus 174 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~~~~~~~~------------~~~~~~~~ 237 (271)
T 4iin_A 174 --MGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNANL--KDELKADYV------------KNIPLNRL 237 (271)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC--------------CG------------GGCTTCSC
T ss_pred --CCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhhh--cHHHHHHHH------------hcCCcCCC
Confidence 45678999999999999998877 489999999999988743210 011111111 11223457
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+++|+|++++.++..+.. .+| +++++.+|.
T Consensus 238 ~~p~dvA~~i~~l~s~~~~~itG-----------~~i~vdGG~ 269 (271)
T 4iin_A 238 GSAKEVAEAVAFLLSDHSSYITG-----------ETLKVNGGL 269 (271)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTS
T ss_pred cCHHHHHHHHHHHhCCCcCCCcC-----------CEEEeCCCe
Confidence 8999999999999876543 233 899998875
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=195.63 Aligned_cols=236 Identities=12% Similarity=0.078 Sum_probs=167.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..++........ .....+..+.+|++|+++++++++.. ++
T Consensus 8 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQ-YPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH-CTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhh-CCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 56789999999999999999999999999999999654322222222111 11346788999999999999988765 68
Q ss_pred cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 195 d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
|+||||||.... +.+.++.+..+++|+.++..+++++. +.+. ++||++||...+.+. .+
T Consensus 87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------------~~ 153 (267)
T 3t4x_A 87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKE-GRVIFIASEAAIMPS------------QE 153 (267)
T ss_dssp SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTE-EEEEEECCGGGTSCC------------TT
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CEEEEEcchhhccCC------------Cc
Confidence 999999997543 22344566789999999888877653 3444 399999998876322 45
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC---------CCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR---------PDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
...|+.+|.+.+.+++.++.++ |+++++|+||.+.++... .........+....... ...
T Consensus 154 ~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 225 (267)
T 3t4x_A 154 MAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVETMLNSLYPNEQLTIEEAEKRFMKENR--------PTS 225 (267)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHHHHHHHSSTTSCCCHHHHHHHHHHHHC--------TTC
T ss_pred chHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHHHHHhhcCcccCCCHHHHHHHHhhccC--------Ccc
Confidence 6789999999999999998875 699999999999876210 00001111111111100 011
Q ss_pred eeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 335 VARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
....+.+++|+|++++.++.... ..+| +++++.++...+
T Consensus 226 ~~~r~~~pedvA~~v~fL~s~~~~~itG-----------~~i~vdGG~~~s 265 (267)
T 3t4x_A 226 IIQRLIRPEEIAHLVTFLSSPLSSAING-----------SALRIDGGLVRS 265 (267)
T ss_dssp SSCSCBCTHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTCSCS
T ss_pred cccCccCHHHHHHHHHHHcCccccCccC-----------CeEEECCCcccc
Confidence 12458899999999999887543 2333 999999987654
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.89 E-value=9.5e-23 Score=192.05 Aligned_cols=209 Identities=12% Similarity=0.046 Sum_probs=160.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
.++|++|||||+|+||++++++|+++|++|++++|..+ +|++|+++++++++.. ++
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-----------------------~D~~~~~~v~~~~~~~g~i 60 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-----------------------LDISDEKSVYHYFETIGAF 60 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-----------------------CCTTCHHHHHHHHHHHCSE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-----------------------cCCCCHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999998332 8999999999998764 67
Q ss_pred cEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (476)
Q Consensus 195 d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (476)
|+||||||.... +.+.++.+..+++|+.++.++++++...-. ..+||++||...+... .+..
T Consensus 61 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------~~~~ 128 (223)
T 3uce_A 61 DHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVV------------ANTY 128 (223)
T ss_dssp EEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCC------------TTCH
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCC------------CCch
Confidence 999999997521 334556678899999999999999875421 1389999998876432 4567
Q ss_pred hHHHHHHHHHHHHHHHHHHhC-CcEEEEeeCcccCCCCCCCC--cHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHH
Q 011841 269 LYAATKKAGEEIAHTYNHIYG-LALTGLRFFTVYGPWGRPDM--AYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (476)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~g-i~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (476)
.|+.+|.+.+.+++.++.+++ +++++|+||.|.++...... ....+........+. ..+.+++|+
T Consensus 129 ~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~dv 196 (223)
T 3uce_A 129 VKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLPV------------GKVGEASDI 196 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHSTT------------CSCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCCC------------CCccCHHHH
Confidence 899999999999999998876 99999999999988533211 112223333333222 246789999
Q ss_pred HHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 346 VKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 346 a~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
|++++.++... ..+| +++++.++..+
T Consensus 197 A~~~~~l~~~~-~~tG-----------~~i~vdgG~~~ 222 (223)
T 3uce_A 197 AMAYLFAIQNS-YMTG-----------TVIDVDGGALL 222 (223)
T ss_dssp HHHHHHHHHCT-TCCS-----------CEEEESTTGGG
T ss_pred HHHHHHHccCC-CCCC-----------cEEEecCCeec
Confidence 99999999743 3333 89999988654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=195.82 Aligned_cols=224 Identities=17% Similarity=0.090 Sum_probs=160.1
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
+|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|.++++++++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATA----KAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTL 77 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999954321 11111111 1346889999999999999888743
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ....++.+..+++|+.++.++++++.. .+..++||++||...+.+.
T Consensus 78 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----------- 146 (256)
T 1geg_A 78 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN----------- 146 (256)
T ss_dssp TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-----------
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC-----------
Confidence 67999999997432 223455667899999999988887643 3412499999998754321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcH-----------HHHHHHHHcCCceEEEee
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAY-----------FFFTKDILQGKTIDVYKT 329 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~-----------~~~~~~~~~g~~~~~~~~ 329 (476)
++...|+.+|.+.+.+++.++.+ +|+++++||||.|.++.... .. ......+....
T Consensus 147 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------- 216 (256)
T 1geg_A 147 -PELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAE--IDRQVSEAAGKPLGYGTAEFAKRI------- 216 (256)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHH--HHHHHHHHHTCCTTHHHHHHHTTC-------
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhh--hhhhccccccCChHHHHHHHHhcC-------
Confidence 34568999999999999998876 48999999999999873110 00 00111111111
Q ss_pred CCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 330 QDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
....+.+++|+|++++.++..+. ..+| +++++.++..
T Consensus 217 -----p~~r~~~p~dvA~~v~~l~s~~~~~~tG-----------~~i~vdGG~~ 254 (256)
T 1geg_A 217 -----TLGRLSEPEDVAACVSYLASPDSDYMTG-----------QSLLIDGGMV 254 (256)
T ss_dssp -----TTCSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESSSSS
T ss_pred -----CCCCCcCHHHHHHHHHHHhCccccCCCC-----------CEEEeCCCcc
Confidence 11247899999999999987643 2233 8999988753
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=194.08 Aligned_cols=230 Identities=14% Similarity=0.134 Sum_probs=167.0
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..++|++|||||+|+||++++++|+++|++|+++++.... .......... ...++.++.+|++|.++++++++.+
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 91 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTK---DAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAV 91 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHH---HHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999999999999998875431 1111111111 2357899999999999999988754
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++..... ..+||++||...... .
T Consensus 92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~-----------~ 160 (270)
T 3is3_A 92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDF-----------S 160 (270)
T ss_dssp HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTC-----------C
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccC-----------C
Confidence 78999999998543 234566778999999999999999876432 248999999763110 1
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC----------CCcHHHHHHHHHcCCceEEEeeC
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP----------DMAYFFFTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~----------~~~~~~~~~~~~~g~~~~~~~~~ 330 (476)
.++...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... ..........+....++
T Consensus 161 ~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------ 234 (270)
T 3is3_A 161 VPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASPL------ 234 (270)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHHHHHHHSTT------
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHHHHHhcCCC------
Confidence 1456789999999999999998774 8999999999999874210 01112222222222222
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+.+++|+|++++.++.... ..+| +++++.++.
T Consensus 235 ------~r~~~p~dvA~~v~~L~s~~~~~itG-----------~~i~vdGG~ 269 (270)
T 3is3_A 235 ------HRNGWPQDVANVVGFLVSKEGEWVNG-----------KVLTLDGGA 269 (270)
T ss_dssp ------CSCBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTC
T ss_pred ------CCCCCHHHHHHHHHHHcCCccCCccC-----------cEEEeCCCC
Confidence 246789999999999886543 2333 899998864
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.6e-23 Score=198.80 Aligned_cols=231 Identities=13% Similarity=0.003 Sum_probs=165.3
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.+..+|+||||||+|+||++++++|+++|++|++++|.... ......... ....++.++.+|++|.++++++++.+
T Consensus 21 ~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 97 (269)
T 3gk3_A 21 SMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERND---HVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKV 97 (269)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHH---HHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchH---HHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 34677899999999999999999999999999999864321 111111111 12357999999999999999888754
Q ss_pred -----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||.... ....++.+..+++|+.++.++++++.. .+. ++||++||...+...
T Consensus 98 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 169 (269)
T 3gk3_A 98 LADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRF-GRIVNIGSVNGSRGA------- 169 (269)
T ss_dssp HHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC-------
T ss_pred HHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEeCChhhccCC-------
Confidence 67999999997543 224456678999999999999888643 444 399999998765322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .. ....... ......
T Consensus 170 -----~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~----~~~~~~~-------~~~~~~ 231 (269)
T 3gk3_A 170 -----FGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAV--PQ----DVLEAKI-------LPQIPV 231 (269)
T ss_dssp -----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-------------CCS-------GGGCTT
T ss_pred -----CCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhh--ch----hHHHHHh-------hhcCCc
Confidence 456789999999999999888774 89999999999998754321 00 1111000 011222
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
..+..++|+|++++.++..... .+| +++++.++..++
T Consensus 232 ~~~~~p~dvA~~v~~L~s~~~~~itG-----------~~i~vdgG~~~s 269 (269)
T 3gk3_A 232 GRLGRPDEVAALIAFLCSDDAGFVTG-----------ADLAINGGMHMS 269 (269)
T ss_dssp SSCBCHHHHHHHHHHHTSTTCTTCCS-----------CEEEESTTSCCC
T ss_pred CCccCHHHHHHHHHHHhCCCcCCeeC-----------cEEEECCCEeCc
Confidence 3567899999999998876542 233 899999987543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.9e-22 Score=193.89 Aligned_cols=234 Identities=16% Similarity=0.106 Sum_probs=168.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC--------CchHHHHHHhh-hcCCceEEEEeecCCHHHHH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--------DPSLKRARQKL-LQKHQVFIVEGDLNDAPLLT 186 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~--------~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~ 186 (476)
.++|+||||||+|+||.+++++|+++|++|++++|+.... .+......... ....++.++.+|++|.++++
T Consensus 26 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~ 105 (299)
T 3t7c_A 26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ 105 (299)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence 5789999999999999999999999999999999874311 11122222211 12357999999999999999
Q ss_pred HhhccC-----CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCC
Q 011841 187 KLFDVV-----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLN 252 (476)
Q Consensus 187 ~~~~~~-----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~ 252 (476)
++++.+ ++|+||||||.... +.+.++.+..+++|+.++.++++++.. .+...+||++||.+.+...
T Consensus 106 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~~ 185 (299)
T 3t7c_A 106 AAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRGA 185 (299)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSCC
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC
Confidence 888743 67999999997533 224556678999999999999998643 2323489999998876332
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc------------HHHHHHH
Q 011841 253 TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA------------YFFFTKD 317 (476)
Q Consensus 253 ~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~------------~~~~~~~ 317 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++....... ...+...
T Consensus 186 ------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (299)
T 3t7c_A 186 ------------ENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTYRMFRPDLENPTVEDFQVA 253 (299)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHHHHHCTTSSSCCHHHHHHH
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchhhhhhhhhccchhhHHHHH
Confidence 456789999999999999988775 8999999999999985432100 0000000
Q ss_pred HHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 318 ILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..... ... ..+..++|+|++++.++..... .+| +++++.++..+
T Consensus 254 ~~~~~----------~~p-~r~~~pedvA~~v~fL~s~~a~~itG-----------~~i~vdGG~~l 298 (299)
T 3t7c_A 254 SRQMH----------VLP-IPYVEPADISNAILFLVSDDARYITG-----------VSLPVDGGALL 298 (299)
T ss_dssp HHHHS----------SSS-CSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGG
T ss_pred hhhhc----------ccC-cCCCCHHHHHHHHHHHhCcccccCcC-----------CEEeeCCCccc
Confidence 00000 011 3478899999999999876532 333 89999887643
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-22 Score=191.45 Aligned_cols=216 Identities=15% Similarity=0.096 Sum_probs=159.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+ .+.++.+|++|+++++++++.+
T Consensus 19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--------------~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (253)
T 2nm0_A 19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE--------------GFLAVKCDITDTEQVEQAYKEIEET 84 (253)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT--------------TSEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc--------------cceEEEecCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999654321 3788999999999998888753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... +...++.+..+++|+.++.++++++.. .+. ++||++||.+.+...
T Consensus 85 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~---------- 153 (253)
T 2nm0_A 85 HGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKK-GRVVLISSVVGLLGS---------- 153 (253)
T ss_dssp TCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECCCCCCCCH----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEECchhhCCCC----------
Confidence 57999999997432 235567889999999999999987643 344 399999998765321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... ........+....+ ...+
T Consensus 154 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~--~~~~~~~~~~~~~p------------~~~~ 217 (253)
T 2nm0_A 154 --AGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV--LTDEQRANIVSQVP------------LGRY 217 (253)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC-----------CHHHHHTTCT------------TCSC
T ss_pred --CCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh--cCHHHHHHHHhcCC------------CCCC
Confidence 234689999999999999988775 7999999999998774321 00011112222211 1247
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
+.++|+|++++.++..+.. .+| +++++.++..+
T Consensus 218 ~~p~dvA~~i~~l~s~~~~~~tG-----------~~i~vdGG~~~ 251 (253)
T 2nm0_A 218 ARPEEIAATVRFLASDDASYITG-----------AVIPVDGGLGM 251 (253)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTTC
T ss_pred cCHHHHHHHHHHHhCccccCCcC-----------cEEEECCcccc
Confidence 8999999999999876532 233 88999887543
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-22 Score=192.36 Aligned_cols=224 Identities=18% Similarity=0.159 Sum_probs=165.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ....... ... .++.++.+|++|.++++++++.+
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~-~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~ 77 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER----LLAEAVA-ALE-AEAIAVVADVSDPKAVEAVFAEALEE 77 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHH-TCC-SSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHH-Hhc-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999532 1111111 111 47899999999999999888764
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
++|+||||||.... ....++.+..+++|+.++.++++++..... .++||++||...+ .. .
T Consensus 78 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-~~------------~ 144 (263)
T 2a4k_A 78 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL-GA------------F 144 (263)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC-CH------------H
T ss_pred cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc-CC------------C
Confidence 67999999997532 223345567899999999999999876431 2499999999876 21 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
+...|+.+|.+.+.+++.++.++ |+++++||||.|.++..... ...+...+....++ ..+.++
T Consensus 145 ~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~p~------------~~~~~p 210 (263)
T 2a4k_A 145 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAGL--PPWAWEQEVGASPL------------GRAGRP 210 (263)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTTS--CHHHHHHHHHTSTT------------CSCBCH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhhc--CHHHHHHHHhcCCC------------CCCcCH
Confidence 34689999999999999888764 89999999999999853321 12222333332222 236889
Q ss_pred HHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 343 DDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
+|+|++++.++..+.. .+| +++++.++..+
T Consensus 211 ~dvA~~v~~l~s~~~~~~tG-----------~~i~vdgG~~~ 241 (263)
T 2a4k_A 211 EEVAQAALFLLSEESAYITG-----------QALYVDGGRSI 241 (263)
T ss_dssp HHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTTT
T ss_pred HHHHHHHHHHhCccccCCcC-----------CEEEECCCccc
Confidence 9999999999876432 233 89999888654
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=193.27 Aligned_cols=200 Identities=14% Similarity=0.121 Sum_probs=153.0
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC-------eEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhh
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLF 189 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~-------~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~ 189 (476)
+|+||||||+|+||++++++|+++|+ +|++++|+.+. ......... ...++.++.+|++|++++++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~ 77 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAAD----LEKISLECRAEGALTDTITADISDMADVRRLT 77 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHH----HHHHHHHHHTTTCEEEEEECCTTSHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHH----HHHHHHHHHccCCeeeEEEecCCCHHHHHHHH
Confidence 57899999999999999999999999 99999985321 111211111 1346889999999999999888
Q ss_pred ccC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCC
Q 011841 190 DVV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 190 ~~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~ 256 (476)
+.. ++|+||||||.... ....++.+..+++|+.++.++++++.. .+. ++||++||...+...
T Consensus 78 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~---- 152 (244)
T 2bd0_A 78 THIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS-GHIFFITSVAATKAF---- 152 (244)
T ss_dssp HHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC----
T ss_pred HHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CEEEEEecchhcCCC----
Confidence 742 57999999997532 223456678899999999999988743 444 399999999877432
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.+...|+.+|.+.|.+++.++.+ .|+++++||||.|+++...... .. .
T Consensus 153 --------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-----------~~----------~ 203 (244)
T 2bd0_A 153 --------RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKVD-----------DE----------M 203 (244)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCCC-----------ST----------T
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhcc-----------cc----------c
Confidence 45678999999999999888765 4899999999999998543210 00 0
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcC
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
...+++++|+|++++.++..+.
T Consensus 204 --~~~~~~~~dva~~~~~l~~~~~ 225 (244)
T 2bd0_A 204 --QALMMMPEDIAAPVVQAYLQPS 225 (244)
T ss_dssp --GGGSBCHHHHHHHHHHHHTSCT
T ss_pred --cccCCCHHHHHHHHHHHHhCCc
Confidence 1257899999999999997654
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.4e-22 Score=192.87 Aligned_cols=208 Identities=13% Similarity=0.118 Sum_probs=160.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+|+||||||+|+||++++++|+++|++|++++|+..... ...+.+|++|.++++++++.+
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~---------------~~~~~~d~~d~~~v~~~~~~~~~~ 84 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA---------------DHSFTIKDSGEEEIKSVIEKINSK 84 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS---------------SEEEECSCSSHHHHHHHHHHHHTT
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc---------------ccceEEEeCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999765332 235788999999999888754
Q ss_pred --CccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||... .....++.+..+++|+.++.++++++..... .++||++||...+.+.
T Consensus 85 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~------------ 152 (251)
T 3orf_A 85 SIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRT------------ 152 (251)
T ss_dssp TCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC------------
T ss_pred cCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCC------------
Confidence 6899999999742 2344566778999999999999999875421 2389999998876322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 265 QPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++ +.+...... ....+
T Consensus 153 ~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~----------~~~~~~~~~------------~~~~~ 210 (251)
T 3orf_A 153 SGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTP----------TNRKYMSDA------------NFDDW 210 (251)
T ss_dssp TTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCH----------HHHHHCTTS------------CGGGS
T ss_pred CCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCc----------chhhhcccc------------ccccc
Confidence 45678999999999999999877 4799999999999875 222222221 22357
Q ss_pred eeHHHHHHHHHHHHhhcCc--CCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 340 TYIDDVVKGCVGALDTAGK--STGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~--~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
++++|+|++++.++..+.. .+| +++++.+++..
T Consensus 211 ~~~~dva~~i~~l~~~~~~~~~tG-----------~~i~v~~g~~~ 245 (251)
T 3orf_A 211 TPLSEVAEKLFEWSTNSDSRPTNG-----------SLVKFETKSKV 245 (251)
T ss_dssp BCHHHHHHHHHHHHHCGGGCCCTT-----------CEEEEEEETTE
T ss_pred CCHHHHHHHHHHHhcCccccCCcc-----------eEEEEecCCcc
Confidence 8899999999999987222 222 88998876654
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=194.89 Aligned_cols=222 Identities=16% Similarity=0.095 Sum_probs=161.8
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
+|+||||||+|+||++++++|+++| +.|++++|+.+. ........ ..++.++.+|++|.++++++++.+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~----~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAP----LKKLKEKY--GDRFFYVVGDITEDSVLKQLVNAAVKG 75 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHH----HHHHHHHH--GGGEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHH----HHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHh
Confidence 5799999999999999999999985 788888885321 12222221 347899999999999999988754
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++ ++.+ ++||++||...+...
T Consensus 76 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~~~~~--------- 144 (254)
T 3kzv_A 76 HGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDACNMYF--------- 144 (254)
T ss_dssp HSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCCCCSS---------
T ss_pred cCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchhccCC---------
Confidence 78999999997432 2344566789999999999999987 4444 499999998865422
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEeeCcccCCCCCCCC-------cHHHHHHHHHcCCceEEEeeCCCC
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLRFFTVYGPWGRPDM-------AYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v~G~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++...... ........+....+.
T Consensus 145 ---~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 212 (254)
T 3kzv_A 145 ---SSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKEN--------- 212 (254)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHTT---------
T ss_pred ---CCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHhc---------
Confidence 456789999999999999998875 899999999999988543210 012222222222121
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcC--cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAG--KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~--~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+.+++|+|++++.++.... ..+| +++++.+++.
T Consensus 213 ---~r~~~p~dva~~v~~L~s~~~~~~itG-----------~~i~vdg~~~ 249 (254)
T 3kzv_A 213 ---NQLLDSSVPATVYAKLALHGIPDGVNG-----------QYLSYNDPAL 249 (254)
T ss_dssp ---C----CHHHHHHHHHHHHHCCCGGGTT-----------CEEETTCGGG
T ss_pred ---CCcCCcccHHHHHHHHHhhcccCCCCc-----------cEEEecCccc
Confidence 236778999999999997762 2333 8898877654
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=193.26 Aligned_cols=207 Identities=14% Similarity=0.046 Sum_probs=151.3
Q ss_pred CCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhcc
Q 011841 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
+....+|+||||||+|+||++++++|+++|++|++++|+.+... ....... ...++.++.+|++|.+++.++++.
T Consensus 24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 99 (262)
T 3rkr_A 24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLR----AVEREIVAAGGEAESHACDLSHSDAIAAFATG 99 (262)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHH----HHHHHHHHhCCceeEEEecCCCHHHHHHHHHH
Confidence 34467899999999999999999999999999999999543221 1111111 234789999999999999988876
Q ss_pred C-----CccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCC
Q 011841 192 V-----PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 192 ~-----~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
+ ++|+||||||... .....++.+..+++|+.++.++++++. +.+. ++||++||...+...
T Consensus 100 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~----- 173 (262)
T 3rkr_A 100 VLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKR-GHIINISSLAGKNPV----- 173 (262)
T ss_dssp HHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CEEEEECSSCSSCCC-----
T ss_pred HHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-ceEEEEechhhcCCC-----
Confidence 4 6899999999732 123445667899999999999998864 3444 499999998865322
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|..+.... ... ..
T Consensus 174 -------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----------~~~------------~~ 224 (262)
T 3rkr_A 174 -------ADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVG----------LSA------------KK 224 (262)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccc----------ccc------------cc
Confidence 45678999999999999998876 48999999999998763221 000 11
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCc
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
....++.++|+|++++.++..+..
T Consensus 225 ~~~~~~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 225 SALGAIEPDDIADVVALLATQADQ 248 (262)
T ss_dssp ----CCCHHHHHHHHHHHHTCCTT
T ss_pred ccccCCCHHHHHHHHHHHhcCccc
Confidence 123467899999999999977554
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-22 Score=192.72 Aligned_cols=228 Identities=12% Similarity=0.045 Sum_probs=164.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.... ......... ...++.++.+|++|.+++.++++..
T Consensus 27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 103 (283)
T 1g0o_A 27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTES---AEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 103 (283)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH---HHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999854211 111111111 1347889999999999988887643
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc--CCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV--NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~--~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++... +. ++||++||...+...
T Consensus 104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~~~~~~~----------- 171 (283)
T 1g0o_A 104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSITGQAKA----------- 171 (283)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCGGGTCSS-----------
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEechhhccCC-----------
Confidence 67999999997532 2244566789999999999999998765 33 499999998764321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC-------CC--cHHHHHHHHHc--CCceEEEee
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP-------DM--AYFFFTKDILQ--GKTIDVYKT 329 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~-------~~--~~~~~~~~~~~--g~~~~~~~~ 329 (476)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++.... .. ........+.. ..+
T Consensus 172 ~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p------ 245 (283)
T 1g0o_A 172 VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSP------ 245 (283)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCT------
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHhhcCCC------
Confidence 0236789999999999999988664 8999999999998862110 00 00111122221 111
Q ss_pred CCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 330 QDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
...+.+++|+|++++.++.... ..+| +++++.++.
T Consensus 246 ------~~r~~~p~dvA~~v~~l~s~~~~~itG-----------~~i~vdgG~ 281 (283)
T 1g0o_A 246 ------LRRVGLPIDIARVVCFLASNDGGWVTG-----------KVIGIDGGA 281 (283)
T ss_dssp ------TCSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTC
T ss_pred ------CCCCcCHHHHHHHHHHHhCccccCcCC-----------CEEEeCCCc
Confidence 1237889999999999997643 2333 889998874
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=9.2e-23 Score=198.09 Aligned_cols=202 Identities=15% Similarity=0.008 Sum_probs=153.7
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
...+|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|.++++++++.+
T Consensus 28 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 103 (272)
T 1yb1_A 28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGL----EETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVK 103 (272)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHH----HHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999954321 11111111 1347899999999999998888743
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... ....++.+..+++|+.++.++++++. +.+.. +||++||...+...
T Consensus 104 ~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~~~-------- 174 (272)
T 1yb1_A 104 AEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHG-HIVTVASAAGHVSV-------- 174 (272)
T ss_dssp HHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCCC-CCCH--------
T ss_pred HHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEechhhcCCC--------
Confidence 67999999997542 23445667899999999888877764 44543 99999998876432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh------CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY------GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~------gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
.+...|+.+|.+.|.+++.++.++ |+++++||||.|.++..... ..
T Consensus 175 ----~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~------------------------~~ 226 (272)
T 1yb1_A 175 ----PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP------------------------ST 226 (272)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT------------------------HH
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc------------------------cc
Confidence 345679999999999999988765 79999999999998753210 00
Q ss_pred eeEeceeHHHHHHHHHHHHhhcC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
....+++++|+|++++.++..+.
T Consensus 227 ~~~~~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 227 SLGPTLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp HHCCCCCHHHHHHHHHHHHHTTC
T ss_pred cccCCCCHHHHHHHHHHHHHcCC
Confidence 11246889999999999998754
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=186.34 Aligned_cols=220 Identities=18% Similarity=0.136 Sum_probs=161.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+ ...... +..++.++.+|++|+++++++++.+
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~----~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG----PLREAA----EAVGAHPVVMDVADPASVERGFAEALAH 74 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHH----HTTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHH----HHcCCEEEEecCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999998432 111111 1114889999999999999888753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ....++.+..+++|+.++.++++++.. .+. ++||++||.+.++.
T Consensus 75 ~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~----------- 142 (245)
T 1uls_A 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNP-GSIVLTASRVYLGN----------- 142 (245)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC-EEEEEECCGGGGCC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEccchhcCC-----------
Confidence 57999999997432 223455677899999999999888754 243 48999999884431
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+.+.++.++ |+++++|+||.|.++..... . ......+....+. ..+
T Consensus 143 --~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~-~~~~~~~~~~~p~------------~~~ 206 (245)
T 1uls_A 143 --LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV-P-EKVREKAIAATPL------------GRA 206 (245)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS-C-HHHHHHHHHTCTT------------CSC
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhc-C-HHHHHHHHhhCCC------------CCC
Confidence 345689999999999999887664 89999999999988754321 1 1222223222211 136
Q ss_pred eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.+++|+|++++.++..+. ..+| +++++.++..
T Consensus 207 ~~~~dvA~~v~~l~s~~~~~~tG-----------~~~~vdgG~~ 239 (245)
T 1uls_A 207 GKPLEVAYAALFLLSDESSFITG-----------QVLFVDGGRT 239 (245)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTT
T ss_pred cCHHHHHHHHHHHhCchhcCCcC-----------CEEEECCCcc
Confidence 789999999999987643 2233 8899988754
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-22 Score=190.09 Aligned_cols=218 Identities=15% Similarity=0.086 Sum_probs=159.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~----- 192 (476)
+|+||||||+|+||++++++|+++|++|++++|+.+. ..... ++.++.+|++| ++++++++..
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~-------~~~~~----~~~~~~~D~~~-~~~~~~~~~~~~~~g 69 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE-------AAQSL----GAVPLPTDLEK-DDPKGLVKRALEALG 69 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH-------HHHHH----TCEEEECCTTT-SCHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH-------HHHhh----CcEEEecCCch-HHHHHHHHHHHHHcC
Confidence 5799999999999999999999999999999996531 11111 38889999999 8777766532
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+.. +||++||...+.... .
T Consensus 70 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~~----------~ 138 (239)
T 2ekp_A 70 GLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWG-RVLFIGSVTTFTAGG----------P 138 (239)
T ss_dssp SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCCT----------T
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECchhhccCCC----------C
Confidence 57999999997432 23445677899999999999988873 44544 999999998775321 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.+...|+.+|.+.+.+++.++.++ |+++++||||.|.++..........+...+....++ ..+..
T Consensus 139 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~------------~~~~~ 206 (239)
T 2ekp_A 139 VPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPM------------GRWAR 206 (239)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTCTT------------SSCBC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcCCC------------CCCcC
Confidence 356789999999999999988775 899999999999987422100001222333322211 23788
Q ss_pred HHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 342 IDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
++|+|++++.++..+.. .+| +++++.++.
T Consensus 207 ~~dvA~~~~~l~s~~~~~~tG-----------~~~~vdgG~ 236 (239)
T 2ekp_A 207 PEEIARVAAVLCGDEAEYLTG-----------QAVAVDGGF 236 (239)
T ss_dssp HHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTT
T ss_pred HHHHHHHHHHHcCchhcCCCC-----------CEEEECCCc
Confidence 99999999998865432 233 889998874
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=185.01 Aligned_cols=219 Identities=17% Similarity=0.157 Sum_probs=167.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
.++|++|||||++.||+.+++.|+++|++|++++|+.+..+. ....++..+.+|++|+++++++++.. ++
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~---------~~~~~~~~~~~Dv~~~~~v~~~~~~~g~i 79 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHA---------PRHPRIRREELDITDSQRLQRLFEALPRL 79 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTS---------CCCTTEEEEECCTTCHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhh---------hhcCCeEEEEecCCCHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999997765433 12457899999999999999999875 68
Q ss_pred cEEEEccccCCh--hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV--RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (476)
Q Consensus 195 d~Vi~~Ag~~~~--~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (476)
|++|||||.... ..+.++++..+++|+.++..+.+++. +.+ .+||++||.....+. +...
T Consensus 80 DiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~--G~IVnisS~~~~~~~------------~~~~ 145 (242)
T 4b79_A 80 DVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG--GSILNIASMYSTFGS------------ADRP 145 (242)
T ss_dssp SEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--EEEEEECCGGGTSCC------------SSCH
T ss_pred CEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEeeccccCCC------------CCCH
Confidence 999999997543 33456677899999999998888753 233 489999998754322 3456
Q ss_pred hHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHH
Q 011841 269 LYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (476)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (476)
.|+.+|.+...+.+.++.++ ||+++.|.||.|..|.......-....+.+.+..|+. .+..++|+
T Consensus 146 ~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~Plg------------R~g~peei 213 (242)
T 4b79_A 146 AYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLA------------RWGEAPEV 213 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTC------------SCBCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCC------------CCcCHHHH
Confidence 89999999999999988775 7999999999998874332111133455555555542 24567999
Q ss_pred HHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 346 VKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 346 a~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
|.+++.++.... .-+| +++.+.++
T Consensus 214 A~~v~fLaSd~a~~iTG-----------~~l~VDGG 238 (242)
T 4b79_A 214 ASAAAFLCGPGASFVTG-----------AVLAVDGG 238 (242)
T ss_dssp HHHHHHHTSGGGTTCCS-----------CEEEESTT
T ss_pred HHHHHHHhCchhcCccC-----------ceEEECcc
Confidence 999998875543 3344 88888776
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-22 Score=189.83 Aligned_cols=215 Identities=16% Similarity=0.072 Sum_probs=157.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+. +..+.+|++|+++++++++.+
T Consensus 13 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~--------------~~~~~~D~~~~~~~~~~~~~~~~~ 78 (247)
T 1uzm_A 13 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG--------------LFGVEVDVTDSDAVDRAFTAVEEH 78 (247)
T ss_dssp CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT--------------SEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH--------------hcCeeccCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999997653322 113789999999999888753
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++.. .+. ++||++||...+.+.
T Consensus 79 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~---------- 147 (247)
T 1uzm_A 79 QGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKF-GRMIFIGSVSGLWGI---------- 147 (247)
T ss_dssp HSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCCCC--------------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CEEEEECCHhhccCC----------
Confidence 67999999997542 234456678999999999999988753 444 499999998754221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .......+....+ ...+
T Consensus 148 --~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~p------------~~~~ 211 (247)
T 1uzm_A 148 --GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRAL--DERIQQGALQFIP------------AKRV 211 (247)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHS--CHHHHHHHGGGCT------------TCSC
T ss_pred --CCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhhc--CHHHHHHHHhcCC------------CCCC
Confidence 345789999999999999988764 89999999999987621100 0111122211111 1247
Q ss_pred eeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 TYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
++++|+|++++.++..+.. .+| +++++.++..
T Consensus 212 ~~~~dvA~~~~~l~s~~~~~~~G-----------~~i~vdgG~~ 244 (247)
T 1uzm_A 212 GTPAEVAGVVSFLASEDASYISG-----------AVIPVDGGMG 244 (247)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTT
T ss_pred cCHHHHHHHHHHHcCccccCCcC-----------CEEEECCCcc
Confidence 8999999999999875432 233 8999988754
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-21 Score=185.07 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=155.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
|+||||||+|+||++++++|+++|++|++++|+.+ ........ . ..++.++.+|++|+++++++++.+ +
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 74 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQE----RLQELKDE-L-GDNLYIAQLDVRNRAAIEEMLASLPAEWCN 74 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH-H-CTTEEEEECCTTCHHHHHHHHHTSCTTTCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHH-h-cCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 58999999999999999999999999999998532 11111111 1 247899999999999999998754 6
Q ss_pred ccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 194 ~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
+|+||||||... ...+.++.+..+++|+.++.++++++. +.+. ++||++||.+.+...
T Consensus 75 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~------------ 141 (248)
T 3asu_A 75 IDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNH-GHIINIGSTAGSWPY------------ 141 (248)
T ss_dssp CCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTSCC------------
T ss_pred CCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEccchhccCC------------
Confidence 899999999742 123445667899999999999988875 3444 399999998865321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccC-CCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYG-PWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.| +..... +... .......+ ....++
T Consensus 142 ~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~-----~~~~--~~~~~~~~-------~~~~~~ 207 (248)
T 3asu_A 142 AGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVR-----FKGD--DGKAEKTY-------QNTVAL 207 (248)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC------------------------------------CCB
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhc-----ccCc--hHHHHHHH-------hccCCC
Confidence 456789999999999999988774 89999999999994 532110 0000 00000000 012346
Q ss_pred eHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCC
Q 011841 341 YIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
.++|+|++++.++..+....| +.+.+...
T Consensus 208 ~p~dvA~~v~~l~s~~~~~~g-----------~~i~v~~~ 236 (248)
T 3asu_A 208 TPEDVSEAVWWVSTLPAHVNI-----------NTLEMMPV 236 (248)
T ss_dssp CHHHHHHHHHHHHHSCTTCCC-----------CEEEECCT
T ss_pred CHHHHHHHHHHHhcCCcccee-----------eEEEEccc
Confidence 899999999999987655444 66666554
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=191.53 Aligned_cols=219 Identities=15% Similarity=0.130 Sum_probs=163.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHH-CCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~-~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|++ .|+.|++++|..+.. ...+.++.+|++|.++++++++..
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 68 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS-------------AENLKFIKADLTKQQDITNVLDIIKN 68 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC-------------CTTEEEEECCTTCHHHHHHHHHHTTT
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc-------------cccceEEecCcCCHHHHHHHHHHHHh
Confidence 3568999999999999999999999 799999999865421 236789999999999999888643
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCCC-CeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ-PSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++.....+ .+||++||...+... .+
T Consensus 69 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------------~~ 136 (244)
T 4e4y_A 69 VSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAK------------PN 136 (244)
T ss_dssp CCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCC------------TT
T ss_pred CCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCC------------CC
Confidence 68999999998432 3345567789999999999999998754321 389999998876432 44
Q ss_pred CChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCC---------cHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 267 ASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDM---------AYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++...... ........+....
T Consensus 137 ~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 204 (244)
T 4e4y_A 137 SFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEF------------ 204 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTS------------
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcC------------
Confidence 568999999999999998875 4899999999999887321000 0000222222222
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
....+.+++|+|++++.++..+.. .+| +++++.++..
T Consensus 205 p~~r~~~p~dvA~~v~~l~s~~~~~itG-----------~~i~vdGG~~ 242 (244)
T 4e4y_A 205 PLNRIAQPQEIAELVIFLLSDKSKFMTG-----------GLIPIDGGYT 242 (244)
T ss_dssp TTSSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred CCCCCcCHHHHHHHHHHHhcCccccccC-----------CeEeECCCcc
Confidence 123478899999999999976543 233 8999988753
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=188.63 Aligned_cols=201 Identities=16% Similarity=0.096 Sum_probs=155.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC---CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG---DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G---~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.++|+||||||+|+||++++++|+++| ++|++++|+.+..+. ...... ...++.++.+|++|.++++++++.+
T Consensus 19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~-~~~l~~---~~~~~~~~~~Dl~~~~~v~~~~~~~ 94 (267)
T 1sny_A 19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE-LEDLAK---NHSNIHILEIDLRNFDAYDKLVADI 94 (267)
T ss_dssp -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH-HHHHHH---HCTTEEEEECCTTCGGGHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHH-HHHhhc---cCCceEEEEecCCChHHHHHHHHHH
Confidence 567899999999999999999999999 999999997665432 222111 1347999999999999999888743
Q ss_pred -------CccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHHhc----------CC----CCeEEEecCc
Q 011841 193 -------PFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKSV----------NP----QPSIVWASSS 246 (476)
Q Consensus 193 -------~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~~~----------~~----~~~~V~~SS~ 246 (476)
++|+||||||... .....++.+..+++|+.++.++++++... +. .++||++||.
T Consensus 95 ~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~ 174 (267)
T 1sny_A 95 EGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI 174 (267)
T ss_dssp HHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred HHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecc
Confidence 5799999999754 23344566778999999999999987543 20 2489999998
Q ss_pred cccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCc
Q 011841 247 SVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKT 323 (476)
Q Consensus 247 ~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~ 323 (476)
..+.... ...+...|+.+|.+.|.+++.++.+ .|+++++||||.|.++....
T Consensus 175 ~~~~~~~---------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---------------- 229 (267)
T 1sny_A 175 LGSIQGN---------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDMGGS---------------- 229 (267)
T ss_dssp GGCSTTC---------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTTTCT----------------
T ss_pred cccccCC---------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEeCCcceecCCCCC----------------
Confidence 8765331 1135678999999999999998877 58999999999998764321
Q ss_pred eEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 324 IDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
..++.++|+|+.++.++.....
T Consensus 230 -------------~~~~~~~~~a~~~~~~~~~~~~ 251 (267)
T 1sny_A 230 -------------SAPLDVPTSTGQIVQTISKLGE 251 (267)
T ss_dssp -------------TCSBCHHHHHHHHHHHHHHCCG
T ss_pred -------------CCCCCHHHHHHHHHHHHHhcCc
Confidence 0146789999999999987543
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-21 Score=192.26 Aligned_cols=224 Identities=13% Similarity=0.060 Sum_probs=163.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC-CCCCchHHHHHHhh--hcCCceEEEEeecCC----HHHHHHh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN-SYYDPSLKRARQKL--LQKHQVFIVEGDLND----APLLTKL 188 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~-~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d----~~~l~~~ 188 (476)
.++|+||||||+|+||++++++|+++|++|++++|+. +.. ....... ....++.++.+|++| .++++++
T Consensus 21 l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~----~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~ 96 (288)
T 2x9g_A 21 MEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAA----VSLADELNKERSNTAVVCQADLTNSNVLPASCEEI 96 (288)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHH----HHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHH----HHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHH
Confidence 5678999999999999999999999999999999965 221 1111111 123478999999999 9988888
Q ss_pred hccC-----CccEEEEccccCCh---------h-----hhhcChHHHHHHHHHHHHHHHHHHHhcCC---------CCeE
Q 011841 189 FDVV-----PFTHVLHLAAQAGV---------R-----YAMQNPQSYVASNIAGFVNLLEVCKSVNP---------QPSI 240 (476)
Q Consensus 189 ~~~~-----~~d~Vi~~Ag~~~~---------~-----~~~~~~~~~~~~nv~gt~~ll~~a~~~~~---------~~~~ 240 (476)
++.+ ++|+||||||.... . ...++.+..+++|+.++..+++++..... ..+|
T Consensus 97 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~i 176 (288)
T 2x9g_A 97 INSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSI 176 (288)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEE
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEE
Confidence 8743 67999999997432 2 33455667899999999999988754321 2489
Q ss_pred EEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHH
Q 011841 241 VWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKD 317 (476)
Q Consensus 241 V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~ 317 (476)
|++||.+.+... .+...|+.+|.+.+.+++.++.++ |+++++|+||.|+++. .. . ......
T Consensus 177 v~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~-~~--~-~~~~~~ 240 (288)
T 2x9g_A 177 VNLCDAMVDQPC------------MAFSLYNMGKHALVGLTQSAALELAPYGIRVNGVAPGVSLLPV-AM--G-EEEKDK 240 (288)
T ss_dssp EEECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSCSCCT-TS--C-HHHHHH
T ss_pred EEEecccccCCC------------CCCchHHHHHHHHHHHHHHHHHHhhccCeEEEEEEeccccCcc-cc--C-hHHHHH
Confidence 999998876421 456789999999999999988775 8999999999999986 31 1 122233
Q ss_pred HHcCCceEEEeeCCCCceeEec-eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 318 ILQGKTIDVYKTQDDREVARDF-TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~-v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
+....++ ..+ ..++|+|++++.++.... ..+| +++++.++..
T Consensus 241 ~~~~~p~------------~r~~~~pedvA~~v~~l~s~~~~~itG-----------~~i~vdGG~~ 284 (288)
T 2x9g_A 241 WRRKVPL------------GRREASAEQIADAVIFLVSGSAQYITG-----------SIIKVDGGLS 284 (288)
T ss_dssp HHHTCTT------------TSSCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred HHhhCCC------------CCCCCCHHHHHHHHHHHhCccccCccC-----------CEEEECcchh
Confidence 3322221 124 689999999999987543 2233 8899988754
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=190.30 Aligned_cols=209 Identities=13% Similarity=0.124 Sum_probs=156.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc-----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV----- 191 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~----- 191 (476)
++|+||||||+|+||++++++|+++|++|++++|+.+... ..+.++.+|++|.++++++++.
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~~~~~~~~~~~~~ 68 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------------DSNILVDGNKNWTEQEQSILEQTASSL 68 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------------SEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-------------cccEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4579999999999999999999999999999999765322 1356788999999998888763
Q ss_pred --CCccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 192 --VPFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 192 --~~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
-++|+||||||... .....++.+..+++|+.++.++++++...-. .++||++||...+...
T Consensus 69 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~----------- 137 (236)
T 1ooe_A 69 QGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPT----------- 137 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC-----------
T ss_pred CCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCC-----------
Confidence 26799999999743 2334556678999999999999998875321 1389999998876321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+++.++.++ |+++++||||.|.++. ........ ....
T Consensus 138 -~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~----------~~~~~~~~------------~~~~ 194 (236)
T 1ooe_A 138 -PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM----------NRKWMPNA------------DHSS 194 (236)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH----------HHHHSTTC------------CGGG
T ss_pred -CCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc----------hhhcCCCc------------cccc
Confidence 456789999999999999998765 4999999999998861 22221111 1123
Q ss_pred ceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 339 FTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
++.++|+|++++.++..+....-.| +.+++.++.
T Consensus 195 ~~~~~dvA~~i~~~l~s~~~~~~~G---------~~~~v~gg~ 228 (236)
T 1ooe_A 195 WTPLSFISEHLLKWTTETSSRPSSG---------ALLKITTEN 228 (236)
T ss_dssp CBCHHHHHHHHHHHHHCGGGCCCTT---------CEEEEEEET
T ss_pred cCCHHHHHHHHHHHHcCCCcccccc---------cEEEEecCC
Confidence 5778999999997775443321111 788887654
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=194.61 Aligned_cols=226 Identities=15% Similarity=0.094 Sum_probs=159.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|+++++..... ........ ....++.++.+|++|+++++++++.+
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAA---AEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHH---HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHH---HHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999986644321 11111111 12347899999999999999988754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... ....++.+..+++|+.++.++++++...- ...+||++||...+...
T Consensus 102 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------------ 169 (267)
T 3u5t_A 102 AFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLH------------ 169 (267)
T ss_dssp HHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCC------------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCC------------
Confidence 68999999997542 22334566788999999999998876432 12489999998765422
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
++...|+.+|.+.+.+++.++.++ |+++++|+||.|..+..... ........+....+ ...+..
T Consensus 170 ~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~-~~~~~~~~~~~~~p------------~~r~~~ 236 (267)
T 3u5t_A 170 PSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEG-KSDEVRDRFAKLAP------------LERLGT 236 (267)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC------------CHHHHHTSST------------TCSCBC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCcccccc-CCHHHHHHHHhcCC------------CCCCcC
Confidence 355789999999999999999885 79999999999988743211 00111222222222 234678
Q ss_pred HHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCC
Q 011841 342 IDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
++|+|++++.++..... .+| +++++.++
T Consensus 237 pedvA~~v~~L~s~~~~~itG-----------~~i~vdGG 265 (267)
T 3u5t_A 237 PQDIAGAVAFLAGPDGAWVNG-----------QVLRANGG 265 (267)
T ss_dssp HHHHHHHHHHHHSTTTTTCCS-----------EEEEESSS
T ss_pred HHHHHHHHHHHhCccccCccC-----------CEEEeCCC
Confidence 99999999998865432 233 89999876
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-22 Score=191.67 Aligned_cols=208 Identities=14% Similarity=0.066 Sum_probs=153.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||+|+||.+++++|+++|++|++++|+.+..+..............++.++.+|++|.++++++++..
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK 84 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999654322222222111112257899999999999999888753
Q ss_pred --CccEEEEccccCCh---hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~---~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ..+.++.+..+++|+.++..+++++. +.+. ++||++||...+.+.
T Consensus 85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~----------- 152 (250)
T 3nyw_A 85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKN-GYIFNVASRAAKYGF----------- 152 (250)
T ss_dssp HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECC------------------
T ss_pred cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEEccHHhcCCC-----------
Confidence 68999999997432 33445667899999999999998873 3444 399999997754211
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+ +.+..... .....++
T Consensus 153 -~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~----------~~~~~~~~------------~~~~~~~ 209 (250)
T 3nyw_A 153 -ADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTD----------MAKKAGTP------------FKDEEMI 209 (250)
T ss_dssp -CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSH----------HHHHTTCC------------SCGGGSB
T ss_pred -CCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCc----------hhhhcCCC------------cccccCC
Confidence 346789999999999999988775 899999999999775 22211111 1113478
Q ss_pred eHHHHHHHHHHHHhhcCc
Q 011841 341 YIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~ 358 (476)
.++|+|++++.++..+..
T Consensus 210 ~p~dva~~v~~l~s~~~~ 227 (250)
T 3nyw_A 210 QPDDLLNTIRCLLNLSEN 227 (250)
T ss_dssp CHHHHHHHHHHHHTSCTT
T ss_pred CHHHHHHHHHHHHcCCCc
Confidence 999999999999987654
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=188.81 Aligned_cols=226 Identities=13% Similarity=0.046 Sum_probs=165.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|+++++.... .......... ...++.++.+|++|+++++++++.+
T Consensus 29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAE---RAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHH---HHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999775421 1111111111 1357889999999999999888754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++...- ...+||++||...... +.
T Consensus 106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~-----------~~ 174 (271)
T 3v2g_A 106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELV-----------PW 174 (271)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCC-----------CS
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccC-----------CC
Confidence 67999999997432 23455667899999999999999987542 1348999999654211 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++....... ......+..+. ..+..
T Consensus 175 ~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~---~~~~~~~~~~~------------~r~~~ 239 (271)
T 3v2g_A 175 PGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPADGD---HAEAQRERIAT------------GSYGE 239 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSSCS---SHHHHHHTCTT------------SSCBC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCcccccch---hHHHHHhcCCC------------CCCCC
Confidence 456789999999999999988775 8999999999999985433211 11222222222 23678
Q ss_pred HHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 342 IDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
++|+|++++.++.... ..+| +++++.++.
T Consensus 240 pedvA~~v~fL~s~~~~~itG-----------~~i~vdGG~ 269 (271)
T 3v2g_A 240 PQDIAGLVAWLAGPQGKFVTG-----------ASLTIDGGA 269 (271)
T ss_dssp HHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTT
T ss_pred HHHHHHHHHHHhCcccCCccC-----------CEEEeCcCc
Confidence 9999999998886543 3333 899998874
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=197.84 Aligned_cols=215 Identities=18% Similarity=0.119 Sum_probs=153.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||.+++++|+++|++|++++|+.+..++........ ....+.++.+|++|+++++++++.+
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 108 (281)
T 4dry_A 31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGR--TGNIVRAVVCDVGDPDQVAALFAAVRAE 108 (281)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--HSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--CCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999654222221111111 1224689999999999999988765
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHh----cC-CCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKS----VN-PQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~-~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++.. .+ ..++||++||...+...
T Consensus 109 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~-------- 180 (281)
T 4dry_A 109 FARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPR-------- 180 (281)
T ss_dssp HSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCC--------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCC--------
Confidence 78999999997432 234556678999999998888887643 32 12489999998765321
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|..+... .+..+ ... ........
T Consensus 181 ----~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~----------~~~~~----~~~-~~~~~~~~ 241 (281)
T 4dry_A 181 ----PNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTA----------RMSTG----VLQ-ANGEVAAE 241 (281)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC-----------------CE----EEC-TTSCEEEC
T ss_pred ----CCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhh----------hhcch----hhh-hhhccccc
Confidence 45678999999999999998876 4899999999999886322 11110 000 01112233
Q ss_pred eceeHHHHHHHHHHHHhhcCcC
Q 011841 338 DFTYIDDVVKGCVGALDTAGKS 359 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~~ 359 (476)
.++.++|+|++++.++..+...
T Consensus 242 ~~~~pedvA~~v~fL~s~~~~~ 263 (281)
T 4dry_A 242 PTIPIEHIAEAVVYMASLPLSA 263 (281)
T ss_dssp CCBCHHHHHHHHHHHHHSCTTE
T ss_pred CCCCHHHHHHHHHHHhCCCccC
Confidence 4789999999999999887654
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=184.87 Aligned_cols=197 Identities=15% Similarity=0.076 Sum_probs=142.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
.+|+||||||+|+||++++++|+++|++|++++|+.+ ........ ..++.++.+|++|.++++++++.+
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEK----RLQALAAE---LEGALPLPGDVREEGDWARAVAAMEEAF 76 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHH---STTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHH---hhhceEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578999999999999999999999999999998432 11111111 127889999999999998888753
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ....++.+..+++|+.++.++++. +++.+.. +||++||...+...
T Consensus 77 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~~~~~----------- 144 (234)
T 2ehd_A 77 GELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGG-TIVNVGSLAGKNPF----------- 144 (234)
T ss_dssp SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE-EEEEECCTTTTSCC-----------
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc-EEEEECCchhcCCC-----------
Confidence 67999999997432 223455678999999999766655 4555554 99999998876422
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++||||.+.++.... . .. . + .++
T Consensus 145 -~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----------~-~~-~---~----------~~~ 198 (234)
T 2ehd_A 145 -KGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAGN----------T-PG-Q---A----------WKL 198 (234)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC-----------------------------------------C
T ss_pred -CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCcccc----------c-cc-c---c----------CCC
Confidence 45678999999999998888765 48999999999998763210 0 00 0 1 157
Q ss_pred eHHHHHHHHHHHHhhcCc
Q 011841 341 YIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~ 358 (476)
.++|+|++++.++..+..
T Consensus 199 ~~~dvA~~~~~l~~~~~~ 216 (234)
T 2ehd_A 199 KPEDVAQAVLFALEMPGH 216 (234)
T ss_dssp CHHHHHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHHhCCCcc
Confidence 899999999999987643
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=194.57 Aligned_cols=227 Identities=15% Similarity=0.106 Sum_probs=164.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC---eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD---GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~---~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.++|+||||||+|+||++++++|+++|+ .|++++|+.+..++..+.... .....++.++.+|++|+++++++++.+
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 109 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQ-EFPNAKVHVAQLDITQAEKIKPFIENL 109 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH-HCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHh-hCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999998 999999965432221111111 112347899999999999999998865
Q ss_pred -----CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
++|+||||||.... +.+.++.+..+++|+.|+.++++++ ++.+.. +||++||.+.+...
T Consensus 110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~IV~isS~~~~~~~------ 182 (287)
T 3rku_A 110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSG-DIVNLGSIAGRDAY------ 182 (287)
T ss_dssp CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCC------
T ss_pred HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEECChhhcCCC------
Confidence 68999999997431 2345567789999999999999987 344543 99999998865322
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCC--CCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++... ........ .......
T Consensus 183 ------~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~-~~~~~~~----------- 244 (287)
T 3rku_A 183 ------PTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVRYRGNEEQA-KNVYKDT----------- 244 (287)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHHTTTCHHHH-HHHHTTS-----------
T ss_pred ------CCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCccccccccCcHHHH-HHhhccc-----------
Confidence 45678999999999999999888 4899999999999887310 00000111 1111111
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCCcc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
.++.++|+|++++.++..+... .| +++++.+++..
T Consensus 245 ----~p~~pedvA~~v~~l~s~~~~~i~g-----------~~i~v~~g~~~ 280 (287)
T 3rku_A 245 ----TPLMADDVADLIVYATSRKQNTVIA-----------DTLIFPTNQAS 280 (287)
T ss_dssp ----CCEEHHHHHHHHHHHHTSCTTEEEE-----------EEEEEETTEEE
T ss_pred ----CCCCHHHHHHHHHHHhCCCCCeEec-----------ceEEeeCCCCC
Confidence 1347899999999999765432 22 78888776643
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=194.01 Aligned_cols=208 Identities=15% Similarity=0.010 Sum_probs=154.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHH-CCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~-~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+|+||+++++.|++ +|++|++++|+.+..+ ........ ..++.++.+|++|.++++++++..
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~----~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQ----AAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLR 77 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHH----HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHH----HHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999999 9999999999543211 11111111 347899999999999999888744
Q ss_pred ----CccEEEEccccCChhhh----hcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCC----------
Q 011841 193 ----PFTHVLHLAAQAGVRYA----MQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNT---------- 253 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~~~~----~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~---------- 253 (476)
++|+||||||....... .++.+..+++|+.++.++++++..... .++||++||...+....
T Consensus 78 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~ 157 (276)
T 1wma_A 78 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKF 157 (276)
T ss_dssp HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHH
T ss_pred HhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhc
Confidence 67999999997543221 245677899999999999999876532 13899999987663210
Q ss_pred -CCCCCCCC------------------CCCCCCChHHHHHHHHHHHHHHHHHH-------hCCcEEEEeeCcccCCCCCC
Q 011841 254 -QVPFSESH------------------RTDQPASLYAATKKAGEEIAHTYNHI-------YGLALTGLRFFTVYGPWGRP 307 (476)
Q Consensus 254 -~~~~~E~~------------------~~~~p~~~Y~~sK~~~E~~~~~~~~~-------~gi~~~ilRp~~v~G~~~~~ 307 (476)
..+++|++ ....|...|+.+|.+.|.+++.++.+ .|+++++|+||.|.++....
T Consensus 158 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v~PG~v~t~~~~~ 237 (276)
T 1wma_A 158 RSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP 237 (276)
T ss_dssp HCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCT
T ss_pred cccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEecCCccccCcCCc
Confidence 01122211 01124589999999999999988766 48999999999998874321
Q ss_pred CCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 308 DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
..+.+++|+|++++.++..+
T Consensus 238 -----------------------------~~~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 238 -----------------------------KATKSPEEGAETPVYLALLP 257 (276)
T ss_dssp -----------------------------TCSBCHHHHTHHHHHHHSCC
T ss_pred -----------------------------cccCChhHhhhhHhhhhcCc
Confidence 12578999999999999765
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=185.13 Aligned_cols=205 Identities=16% Similarity=0.105 Sum_probs=152.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~----- 192 (476)
+|+||||||+|+||++++++|+++|++|++++|+.+..+........ ....++.++.+|++|+++++++++..
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQ--EQGVEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--HHCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--hcCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999954422222211111 12457999999999999999998854
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
++|+||||||.... +.+.++.+..+++|+.++.++++++... +. .++|++||...+... +
T Consensus 80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~ii~~sS~~~~~~~------------~ 146 (235)
T 3l77_A 80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTG-GLALVTTSDVSARLI------------P 146 (235)
T ss_dssp SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSCC------------T
T ss_pred CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CcEEEEecchhcccC------------C
Confidence 68999999998543 2245667789999999999999987542 22 377888776644221 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHH-hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHH
Q 011841 266 PASLYAATKKAGEEIAHTYNHI-YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (476)
....|+.+|.+.+.+++.+..+ .|+++++|+||.|..+...... . ......++.++|
T Consensus 147 ~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~~-----------~-----------~~~~~~~~~p~d 204 (235)
T 3l77_A 147 YGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSKP-----------G-----------KPKEKGYLKPDE 204 (235)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCCS-----------C-----------CCGGGTCBCHHH
T ss_pred CcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCccccccccccC-----------C-----------cccccCCCCHHH
Confidence 4568999999999999988544 3899999999999887432110 0 011124788999
Q ss_pred HHHHHHHHHhhcCcC
Q 011841 345 VVKGCVGALDTAGKS 359 (476)
Q Consensus 345 va~a~~~~l~~~~~~ 359 (476)
+|++++.++..+...
T Consensus 205 va~~v~~l~~~~~~~ 219 (235)
T 3l77_A 205 IAEAVRCLLKLPKDV 219 (235)
T ss_dssp HHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999887653
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=187.17 Aligned_cols=230 Identities=14% Similarity=0.068 Sum_probs=165.4
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
+.++|+||||||+|+||++++++|+++|++|+++++.... ......... .....+.++.+|++|.++++++++..
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 80 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKE---EAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLD 80 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSH---HHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchH---HHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHH
Confidence 3578999999999999999999999999999997553321 111111111 12447889999999999988887653
Q ss_pred ----------CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCC
Q 011841 193 ----------PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 193 ----------~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
++|+||||||.... ....++.+..+++|+.++.++++++...- ...+||++||.+.+...
T Consensus 81 ~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~----- 155 (255)
T 3icc_A 81 NELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISL----- 155 (255)
T ss_dssp HHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCC-----
T ss_pred HHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCC-----
Confidence 37999999997433 22344556789999999999999987541 11389999998876432
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
+....|+.+|.+.+.+++.++.++ |+++++|+||.|.++..........+........++
T Consensus 156 -------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~---------- 218 (255)
T 3icc_A 156 -------PDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAF---------- 218 (255)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTSTT----------
T ss_pred -------CCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhhcccHHHHHhhhccCCc----------
Confidence 345789999999999999988774 899999999999988543221112222222222221
Q ss_pred eeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 335 VARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+..++|+|++++.++.... ..+| +++++.++..
T Consensus 219 --~~~~~~~dva~~~~~l~s~~~~~~tG-----------~~i~vdgG~~ 254 (255)
T 3icc_A 219 --NRLGEVEDIADTAAFLASPDSRWVTG-----------QLIDVSGGSC 254 (255)
T ss_dssp --SSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESSSTT
T ss_pred --CCCCCHHHHHHHHHHHhCcccCCccC-----------CEEEecCCee
Confidence 246789999999998886543 2333 8999988753
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-22 Score=196.46 Aligned_cols=226 Identities=14% Similarity=0.026 Sum_probs=164.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEe-CCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHH---------
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD-NFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAP--------- 183 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~-R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~--------- 183 (476)
..+|+||||||+|+||++++++|+++|++|++++ |+.+.. ....... ....++.++.+|++|.+
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 119 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEA----NALSATLNARRPNSAITVQADLSNVATAPVSGADG 119 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH----HHHHHHHHHHSTTCEEEEECCCSSSCBCC------
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHH----HHHHHHHHhhcCCeEEEEEeeCCCchhcccccccc
Confidence 5678999999999999999999999999999999 743221 1111111 11347899999999999
Q ss_pred --------HHHHhhccC-----CccEEEEccccCCh----hhh--------------hcChHHHHHHHHHHHHHHHHHHH
Q 011841 184 --------LLTKLFDVV-----PFTHVLHLAAQAGV----RYA--------------MQNPQSYVASNIAGFVNLLEVCK 232 (476)
Q Consensus 184 --------~l~~~~~~~-----~~d~Vi~~Ag~~~~----~~~--------------~~~~~~~~~~nv~gt~~ll~~a~ 232 (476)
+++++++.+ ++|+||||||.... ... .++.+..+++|+.++.++++++.
T Consensus 120 ~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 199 (328)
T 2qhx_A 120 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 199 (328)
T ss_dssp -CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888754 67999999997432 122 44556789999999999998865
Q ss_pred h----cCC-----CCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcc
Q 011841 233 S----VNP-----QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTV 300 (476)
Q Consensus 233 ~----~~~-----~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v 300 (476)
. .+. .++||++||...+... .+...|+.+|.+.+.+++.++.++ |+++++|+||.|
T Consensus 200 ~~m~~~~~~~~~~~g~IV~isS~~~~~~~------------~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v 267 (328)
T 2qhx_A 200 HRVAGTPAKHRGTNYSIINMVDAMTNQPL------------LGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 267 (328)
T ss_dssp HHHHHSCGGGSCSCEEEEEECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred HHHHhcCCcCCCCCcEEEEECchhhccCC------------CCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcc
Confidence 3 330 2489999998865321 456789999999999999988775 899999999999
Q ss_pred cCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcC
Q 011841 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGN 379 (476)
Q Consensus 301 ~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~ 379 (476)
.++. .. . ......+....++ + ..+..++|+|++++.++.... ..+| +++++.+
T Consensus 268 ~T~~-~~--~-~~~~~~~~~~~p~--------~---~r~~~pedvA~~v~~l~s~~~~~itG-----------~~i~vdG 321 (328)
T 2qhx_A 268 VLVD-DM--P-PAVWEGHRSKVPL--------Y---QRDSSAAEVSDVVIFLCSSKAKYITG-----------TCVKVDG 321 (328)
T ss_dssp SCCC-CS--C-HHHHHHHHTTCTT--------T---TSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEEST
T ss_pred cCCc-cc--c-HHHHHHHHhhCCC--------C---CCCCCHHHHHHHHHHHhCccccCccC-----------cEEEECC
Confidence 9986 21 1 2333344433222 1 026789999999999986533 2233 8999988
Q ss_pred CCcc
Q 011841 380 TSPV 383 (476)
Q Consensus 380 ~~~v 383 (476)
+..+
T Consensus 322 G~~~ 325 (328)
T 2qhx_A 322 GYSL 325 (328)
T ss_dssp TGGG
T ss_pred Cccc
Confidence 7543
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-22 Score=197.02 Aligned_cols=226 Identities=14% Similarity=0.093 Sum_probs=165.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ........ ..++.++.+|++|.++++++++.+
T Consensus 28 l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~----~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 101 (281)
T 3ppi_A 28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEK----GKALADEL--GNRAEFVSTNVTSEDSVLAAIEAANQL 101 (281)
T ss_dssp GTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHH----HHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999995421 12222222 347999999999999999888742
Q ss_pred -CccEEEEccc-cCCh---------hhhhcChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCccccCCC
Q 011841 193 -PFTHVLHLAA-QAGV---------RYAMQNPQSYVASNIAGFVNLLEVCKSV---------NPQPSIVWASSSSVYGLN 252 (476)
Q Consensus 193 -~~d~Vi~~Ag-~~~~---------~~~~~~~~~~~~~nv~gt~~ll~~a~~~---------~~~~~~V~~SS~~vyg~~ 252 (476)
++|+|||||+ .... ....++.+..+++|+.++.++++++... +..++||++||...+...
T Consensus 102 ~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~ 181 (281)
T 3ppi_A 102 GRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQ 181 (281)
T ss_dssp SEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCC
T ss_pred CCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCC
Confidence 5799999944 3221 1233446789999999999999987521 122489999998876432
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEee
Q 011841 253 TQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKT 329 (476)
Q Consensus 253 ~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~ 329 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... .......+....+.
T Consensus 182 ------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~--~~~~~~~~~~~~~~----- 242 (281)
T 3ppi_A 182 ------------IGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKTPIMESV--GEEALAKFAANIPF----- 242 (281)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTT--CHHHHHHHHHTCCS-----
T ss_pred ------------CCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCchhhhcc--cHHHHHHHHhcCCC-----
Confidence 456789999999999999888775 89999999999987632111 11223333333221
Q ss_pred CCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 330 QDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
...+++++|+|++++.++... ..+| +++++.++..++
T Consensus 243 ------~~~~~~pedvA~~v~~l~s~~-~~tG-----------~~i~vdGG~~~~ 279 (281)
T 3ppi_A 243 ------PKRLGTPDEFADAAAFLLTNG-YING-----------EVMRLDGAQRFT 279 (281)
T ss_dssp ------SSSCBCHHHHHHHHHHHHHCS-SCCS-----------CEEEESTTCCCC
T ss_pred ------CCCCCCHHHHHHHHHHHHcCC-CcCC-----------cEEEECCCcccC
Confidence 034788999999999999753 3333 899999987654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-22 Score=196.48 Aligned_cols=226 Identities=18% Similarity=0.072 Sum_probs=165.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+........ ....+.++.+|++|.++++++++..
T Consensus 31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIA---SGGTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHH---TTCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh---cCCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999977655443333222 2457899999999999988887643
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++ ++.+. ++||++||...+...
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~Iv~isS~~~~~~~----------- 175 (275)
T 4imr_A 108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKW-GRVVSIGSINQLRPK----------- 175 (275)
T ss_dssp SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC-----------
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-cEEEEECCHHhCCCC-----------
Confidence 67999999997432 2344566778999999999999987 33444 399999998876421
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc-HHHHHHHHHcCC-ceEEEeeCCCCceeEe
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA-YFFFTKDILQGK-TIDVYKTQDDREVARD 338 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++....... .......+.... ++ ..
T Consensus 176 -~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~------------~r 242 (275)
T 4imr_A 176 -SVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLNWM------------GR 242 (275)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHSTT------------CS
T ss_pred -CCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCcccccccccChHHHHHHHhhcCcc------------CC
Confidence 445679999999999999988775 8999999999998762110000 011111111111 11 23
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
+..++|+|++++.++.... ..+| +++++.+|
T Consensus 243 ~~~pedvA~~v~fL~s~~a~~itG-----------~~i~vdGG 274 (275)
T 4imr_A 243 AGRPEEMVGAALFLASEACSFMTG-----------ETIFLTGG 274 (275)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCS-----------CEEEESSC
T ss_pred CcCHHHHHHHHHHHcCcccCCCCC-----------CEEEeCCC
Confidence 5678999999999887653 2333 89998775
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=190.04 Aligned_cols=212 Identities=17% Similarity=0.163 Sum_probs=149.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
|+||||||+|+||++++++|+++|++|++++|+.+ .............++.++.+|++|+++++++++.+ +
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 97 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREE----RLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFAT 97 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSS
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999999999999542 11222222211247899999999999999998765 6
Q ss_pred ccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
+|+||||||.... ....++.+..+++|+.++.++++++. +.+..++||++||...+...
T Consensus 98 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~------------ 165 (272)
T 2nwq_A 98 LRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPY------------ 165 (272)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCC------------
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCC------------
Confidence 8999999997432 23345667889999999888777653 44432289999998865321
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|.++..... +... ........ ....++.
T Consensus 166 ~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-----~~~~--~~~~~~~~-------~~~~~~~ 231 (272)
T 2nwq_A 166 PGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEFSLVR-----FGGD--QARYDKTY-------AGAHPIQ 231 (272)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC----------------------------------CCCCBC
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcchhcc-----cccc--hHHHHHhh-------ccCCCCC
Confidence 345789999999999999988663 79999999999988742210 0000 00000001 0012478
Q ss_pred HHHHHHHHHHHHhhcCcCC
Q 011841 342 IDDVVKGCVGALDTAGKST 360 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~~~ 360 (476)
++|+|++++.++..+....
T Consensus 232 pedvA~~v~~l~s~~~~~~ 250 (272)
T 2nwq_A 232 PEDIAETIFWIMNQPAHLN 250 (272)
T ss_dssp HHHHHHHHHHHHTSCTTEE
T ss_pred HHHHHHHHHHHhCCCccCc
Confidence 9999999999998654433
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=195.62 Aligned_cols=222 Identities=12% Similarity=0.037 Sum_probs=152.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--CccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--~~d~ 196 (476)
|+||||||+|+||++++++|+++|++|++++|+.+.... . +.+|++|.++++++++.. ++|+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---------------~-~~~Dl~~~~~v~~~~~~~~~~id~ 65 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA---------------D-LSTAEGRKQAIADVLAKCSKGMDG 65 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---------------C-TTSHHHHHHHHHHHHTTCTTCCSE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc---------------c-cccCCCCHHHHHHHHHHhCCCCCE
Confidence 689999999999999999999999999999996543211 1 568999999999998865 6899
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC-----C------
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES-----H------ 261 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~-----~------ 261 (476)
||||||.... ....+..+++|+.++.++++++. +.+. ++||++||.+.+......+..++ +
T Consensus 66 lv~~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (257)
T 1fjh_A 66 LVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQ-PAAVVISSVASAHLAFDKNPLALALEAGEEAKARA 141 (257)
T ss_dssp EEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSS-CEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHH
T ss_pred EEECCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEECChhhhccccccchhhhhhcccchhhhhh
Confidence 9999997541 24578899999999999999875 3444 49999999988732211111000 0
Q ss_pred -----CCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 262 -----RTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 262 -----~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
....+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++..... ............ + .
T Consensus 142 ~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-~~~~~~~~~~~~-----~-----~ 210 (257)
T 1fjh_A 142 IVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG-LQDPRYGESIAK-----F-----V 210 (257)
T ss_dssp HHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------------C-----C
T ss_pred hhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhh-ccchhHHHHHHh-----c-----c
Confidence 11134578999999999999998876 489999999999998743311 000010111100 0 0
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.....+++++|+|++++.++..+.. .+| +++++.++..
T Consensus 211 ~~~~~~~~~~dvA~~~~~l~~~~~~~~tG-----------~~~~vdgG~~ 249 (257)
T 1fjh_A 211 PPMGRRAEPSEMASVIAFLMSPAASYVHG-----------AQIVIDGGID 249 (257)
T ss_dssp CSTTSCCCTHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTHH
T ss_pred cccCCCCCHHHHHHHHHHHhCchhcCCcC-----------CEEEECCCcc
Confidence 0112478999999999999876532 223 8899988753
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=186.92 Aligned_cols=216 Identities=14% Similarity=0.053 Sum_probs=156.1
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-C
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-P 193 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~ 193 (476)
..++|+||||||+|+||++++++|+++|++|++++|+. . .... . ..+.++ +|+ .++++++++.. +
T Consensus 16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~-------~-~~~~-~--~~~~~~-~D~--~~~~~~~~~~~~~ 81 (249)
T 1o5i_A 16 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-------E-LLKR-S--GHRYVV-CDL--RKDLDLLFEKVKE 81 (249)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-------H-HHHH-T--CSEEEE-CCT--TTCHHHHHHHSCC
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH-------H-HHHh-h--CCeEEE-eeH--HHHHHHHHHHhcC
Confidence 36789999999999999999999999999999999943 1 1111 1 256777 999 44566666544 6
Q ss_pred ccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHH----HHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEV----CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~----a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
+|+||||||.... +...++.+..+++|+.++.++++. +++.+.. +||++||...|... .
T Consensus 82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~------------~ 148 (249)
T 1o5i_A 82 VDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWG-RIVAITSFSVISPI------------E 148 (249)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC------------T
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEcchHhcCCC------------C
Confidence 7999999997432 223455677899999997766554 4555654 99999999887532 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHH-HHHcCCceEEEeeCCCCceeEecee
Q 011841 266 PASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTK-DILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
+...|+.+|.+.+.+++.++.+ .|+++++||||.|+++..... ...+.. .+....+ ...+++
T Consensus 149 ~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~~~~~~~~~~~~p------------~~~~~~ 214 (249)
T 1o5i_A 149 NLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKEL--LSEEKKKQVESQIP------------MRRMAK 214 (249)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHH--SCHHHHHHHHTTST------------TSSCBC
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCccccc--chhhHHHHHHhcCC------------CCCCcC
Confidence 4578999999999999988876 489999999999999842110 001112 2222221 124789
Q ss_pred HHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 342 IDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
++|+|++++.++..+.. .+| ++|++.++..
T Consensus 215 ~~dvA~~i~~l~s~~~~~~tG-----------~~~~vdgG~~ 245 (249)
T 1o5i_A 215 PEEIASVVAFLCSEKASYLTG-----------QTIVVDGGLS 245 (249)
T ss_dssp HHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTCC
T ss_pred HHHHHHHHHHHcCccccCCCC-----------CEEEECCCcc
Confidence 99999999998876432 233 8999988753
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-22 Score=188.98 Aligned_cols=201 Identities=18% Similarity=0.120 Sum_probs=149.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
++|+||||||+|+||++++++|+++|++|++++|+.+. ........ ..++.++.+|++|+++++++++.+
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~----~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 75 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQR----LQQQELLL--GNAVIGIVADLAHHEDVDVAFAAAVEWG 75 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHH--GGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHh--cCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999995432 22222222 226999999999999999888754
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
++|+||||||.... +.+.++.+..+++|+.++..+++++...- ...+||++||...+.+. .
T Consensus 76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~------------~ 143 (235)
T 3l6e_A 76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQVGK------------A 143 (235)
T ss_dssp CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCSSC------------S
T ss_pred CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcCCC------------C
Confidence 67999999998433 23456677899999999999998874321 11289999998765322 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+.... . . . .....++.+
T Consensus 144 ~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~------~----~-~------------~~~~~~~~p 200 (235)
T 3l6e_A 144 NESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDN------T----D-H------------VDPSGFMTP 200 (235)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC----------------------------------CBCH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhc------c----C-C------------CCCcCCCCH
Confidence 45789999999999999998774 7999999999998763221 0 0 0 001247899
Q ss_pred HHHHHHHHHHHhhcCc
Q 011841 343 DDVVKGCVGALDTAGK 358 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~ 358 (476)
+|+|++++.++..+..
T Consensus 201 edvA~~v~~l~~~~~~ 216 (235)
T 3l6e_A 201 EDAAAYMLDALEARSS 216 (235)
T ss_dssp HHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHHhCCCC
Confidence 9999999999976543
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-21 Score=186.82 Aligned_cols=229 Identities=13% Similarity=0.006 Sum_probs=169.1
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCCCCC-CchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFNSYY-DPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~~~~-~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.++|+||||||+ |+||.+++++|+++|++|++++|..... .+..+...... ..++.++.+|++|.++++++++.+
T Consensus 18 l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (267)
T 3gdg_A 18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTY--GIKAKAYKCQVDSYESCEKLVKDV 95 (267)
T ss_dssp CTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHH--CCCEECCBCCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhc--CCceeEEecCCCCHHHHHHHHHHH
Confidence 577899999999 8999999999999999999999876543 22222221111 357999999999999999888765
Q ss_pred -----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCC
Q 011841 193 -----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++ ++.+. ++||++||...+....
T Consensus 96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-g~iv~isS~~~~~~~~------ 168 (267)
T 3gdg_A 96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGT-GSLVITASMSGHIANF------ 168 (267)
T ss_dssp HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTSCCS------
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCC-ceEEEEccccccccCC------
Confidence 78999999997543 2244566789999999999999987 44454 3999999987653221
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
..+...|+.+|.+.+.+++.++.+++ +++++|+||.|..+..... .......+....+ ..
T Consensus 169 ----~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~~--~~~~~~~~~~~~~------------~~ 230 (267)
T 3gdg_A 169 ----PQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDFV--PKETQQLWHSMIP------------MG 230 (267)
T ss_dssp ----SSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGGS--CHHHHHHHHTTST------------TS
T ss_pred ----CCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhhC--CHHHHHHHHhcCC------------CC
Confidence 13567899999999999999998864 8999999999987743211 1223333333322 23
Q ss_pred eceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 338 DFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.+.+++|+|++++.++.... ..+| +++++.++..
T Consensus 231 r~~~~~dva~~~~~l~s~~~~~itG-----------~~i~vdgG~~ 265 (267)
T 3gdg_A 231 RDGLAKELKGAYVYFASDASTYTTG-----------ADLLIDGGYT 265 (267)
T ss_dssp SCEETHHHHHHHHHHHSTTCTTCCS-----------CEEEESTTGG
T ss_pred CCcCHHHHHhHhheeecCccccccC-----------CEEEECCcee
Confidence 46788999999999886543 2233 8999988754
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=187.19 Aligned_cols=227 Identities=12% Similarity=0.028 Sum_probs=164.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||+++||+.+++.|+++|++|++++|+.+..++..++.. ....++..+.+|++|+++++++++.+
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~---~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 81 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR---GMGKEVLGVKADVSKKKDVEEFVRRTFET 81 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999996543322222221 12357899999999999999888754
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|++|||||.... +.+.++++..+++|+.++..+.+++. +.+. .+||++||.+.+.+.
T Consensus 82 ~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~IVnisS~~g~~~~--------- 151 (254)
T 4fn4_A 82 YSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGK-GVIVNTASIAGIRGG--------- 151 (254)
T ss_dssp HSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTCSS---------
T ss_pred cCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEEechhhcCCC---------
Confidence 78999999996421 34556678899999999988888753 4444 499999998754322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc-HHHHHHHHHcC-CceEEEeeCCCCcee
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA-YFFFTKDILQG-KTIDVYKTQDDREVA 336 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~-~~~~~~~~~~g-~~~~~~~~~~~~~~~ 336 (476)
.....|+.+|.+...+.+.++.++ ||+++.|.||.|-.|....... -....+...+. .++
T Consensus 152 ---~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~------------ 216 (254)
T 4fn4_A 152 ---FAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLS------------ 216 (254)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTTC------------
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCCC------------
Confidence 345689999999999999988775 8999999999998774321110 01111111111 111
Q ss_pred EeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|.+++.++.... .-+| +++.+.+|-
T Consensus 217 ~R~g~pediA~~v~fLaSd~a~~iTG-----------~~i~VDGG~ 251 (254)
T 4fn4_A 217 SRLAEPEDIANVIVFLASDEASFVNG-----------DAVVVDGGL 251 (254)
T ss_dssp CCCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred CCCcCHHHHHHHHHHHhCchhcCCcC-----------CEEEeCCCc
Confidence 124568999999998885543 3344 899888774
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-21 Score=183.25 Aligned_cols=214 Identities=15% Similarity=0.151 Sum_probs=160.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV----- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~----- 192 (476)
.|+||||||++.||+++++.|+++|++|++++|+.+ .......+..++..+.+|++|+++++++++.+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~-------~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g 74 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEK-------RSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQ 74 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH-------HHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH-------HHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999999998432 12222223457899999999999998887653
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++... +. .++|++||...+.+. +
T Consensus 75 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G~IInisS~~~~~~~------------~ 141 (247)
T 3ged_A 75 RIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-GRIINIASTRAFQSE------------P 141 (247)
T ss_dssp CCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGTSCC------------T
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CcEEEEeecccccCC------------C
Confidence 68999999987432 3345667789999999999888876431 22 499999998765322 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
....|+.+|.+.+.+.+.++.++ +++++.|.||.|-.+... .+.+...+.-|+. .+..++
T Consensus 142 ~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~------~~~~~~~~~~Pl~------------R~g~pe 203 (247)
T 3ged_A 142 DSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQ------EFTQEDCAAIPAG------------KVGTPK 203 (247)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC---------CCHHHHHTSTTS------------SCBCHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcH------HHHHHHHhcCCCC------------CCcCHH
Confidence 45689999999999999988776 699999999999776432 1222333333331 256789
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 344 DVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 344 Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
|+|++++.++.. ..-+| +++.+.+|-
T Consensus 204 diA~~v~fL~s~-~~iTG-----------~~i~VDGG~ 229 (247)
T 3ged_A 204 DISNMVLFLCQQ-DFITG-----------ETIIVDGGM 229 (247)
T ss_dssp HHHHHHHHHHHC-SSCCS-----------CEEEESTTG
T ss_pred HHHHHHHHHHhC-CCCCC-----------CeEEECcCH
Confidence 999999998863 44444 899998874
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-21 Score=187.13 Aligned_cols=213 Identities=13% Similarity=0.096 Sum_probs=158.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc---hHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP---SLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~---~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..++ ......... ....++.++.+|++|+++++++++.
T Consensus 7 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 86 (285)
T 3sc4_A 7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK 86 (285)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence 567899999999999999999999999999999998765433 122222221 1245799999999999999988875
Q ss_pred C-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCC
Q 011841 192 V-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 192 ~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
+ ++|+||||||.... ..+.++.+..+++|+.++.++++++... +. ++||++||...+...
T Consensus 87 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~------ 159 (285)
T 3sc4_A 87 TVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDN-PHILTLSPPIRLEPK------ 159 (285)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSS-CEEEECCCCCCCSGG------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECChhhccCC------
Confidence 4 78999999997542 2344556778999999999999987654 33 499999997754321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
..+...|+.+|.+.+.+++.++.+ .|+++++|+||++... .+.+....... .
T Consensus 160 -----~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t---------~~~~~~~~~~~-----------~ 214 (285)
T 3sc4_A 160 -----WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT---------AAVQNLLGGDE-----------A 214 (285)
T ss_dssp -----GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC---------HHHHHHHTSCC-----------C
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc---------HHHHhhccccc-----------c
Confidence 024478999999999999998877 4899999999953322 12333332221 1
Q ss_pred eEeceeHHHHHHHHHHHHhhcCcCC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGKST 360 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~~~ 360 (476)
...+..++|+|++++.++..+...+
T Consensus 215 ~~r~~~pedvA~~~~~l~s~~~~~t 239 (285)
T 3sc4_A 215 MARSRKPEVYADAAYVVLNKPSSYT 239 (285)
T ss_dssp CTTCBCTHHHHHHHHHHHTSCTTCC
T ss_pred ccCCCCHHHHHHHHHHHhCCccccc
Confidence 1236688999999999998766333
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=189.31 Aligned_cols=225 Identities=16% Similarity=0.138 Sum_probs=159.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. .......... ..++.++.+|++|+++++++++.+
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREA----LEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVR 80 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999985421 1111111111 346889999999999998888744
Q ss_pred ---CccEEEEccccC-Ch----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQA-GV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~-~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|+||||||.. .. ..+.++.+..+++|+.++.++++++.. .+. ++||++||...+...
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-------- 151 (262)
T 1zem_A 81 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNY-GRIVNTASMAGVKGP-------- 151 (262)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHSCC--------
T ss_pred HhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-cEEEEEcchhhccCC--------
Confidence 679999999975 21 234455678899999999999988754 343 399999998766432
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC------------Cc-HHH-HHHHHHcCCc
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD------------MA-YFF-FTKDILQGKT 323 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~------------~~-~~~-~~~~~~~g~~ 323 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+..... .. ... +...+....+
T Consensus 152 ----~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 227 (262)
T 1zem_A 152 ----PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVP 227 (262)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTST
T ss_pred ----CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHHHHhcCC
Confidence 345689999999999999887664 89999999999977621100 00 001 1111211111
Q ss_pred eEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 324 IDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
+ ..+..++|+|++++.++.... ..+| +++++.++
T Consensus 228 ~------------~r~~~p~dvA~~v~~l~s~~~~~itG-----------~~i~vdGG 262 (262)
T 1zem_A 228 M------------RRYGDINEIPGVVAFLLGDDSSFMTG-----------VNLPIAGG 262 (262)
T ss_dssp T------------SSCBCGGGSHHHHHHHHSGGGTTCCS-----------CEEEESCC
T ss_pred C------------CCCcCHHHHHHHHHHHcCchhcCcCC-----------cEEecCCC
Confidence 1 236778999999999886543 2233 78877654
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.4e-21 Score=184.06 Aligned_cols=226 Identities=15% Similarity=0.094 Sum_probs=168.0
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..++|++|||||++.||+.+++.|+++|++|++.+|+.. ++..... .....++..+.+|++|+++++++++..++
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~---~~~g~~~~~~~~Dv~d~~~v~~~~~~g~i 80 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDII---AKDGGNASALLIDFADPLAAKDSFTDAGF 80 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHH---HHTTCCEEEEECCTTSTTTTTTSSTTTCC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHH---HHhCCcEEEEEccCCCHHHHHHHHHhCCC
Confidence 468999999999999999999999999999999999643 1111111 12245789999999999999999887789
Q ss_pred cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 195 d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
|++|||||.... +.+.++++..+++|+.|+..+.+++. +.+...+||++||...+.+. ..
T Consensus 81 DiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~------------~~ 148 (247)
T 4hp8_A 81 DILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGG------------IR 148 (247)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------SS
T ss_pred CEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCC------------CC
Confidence 999999997432 44566778899999999999888643 34433489999998754322 34
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
...|+.+|.+...+.+.++.++ ||+++.|.||.|-.|.......-....+.+.+.-|+.. +..++
T Consensus 149 ~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR------------~g~pe 216 (247)
T 4hp8_A 149 VPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEALRADAARNKAILERIPAGR------------WGHSE 216 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTSS------------CBCTH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCCC------------CcCHH
Confidence 5689999999999999988775 79999999999987632210000223344555544422 45569
Q ss_pred HHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 344 DVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 344 Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
|+|.+++.++.... .-+| +++.+.++
T Consensus 217 eiA~~v~fLaSd~a~~iTG-----------~~i~VDGG 243 (247)
T 4hp8_A 217 DIAGAAVFLSSAAADYVHG-----------AILNVDGG 243 (247)
T ss_dssp HHHHHHHHHTSGGGTTCCS-----------CEEEESTT
T ss_pred HHHHHHHHHhCchhcCCcC-----------CeEEECcc
Confidence 99999988875433 3344 88888776
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=191.11 Aligned_cols=229 Identities=13% Similarity=0.085 Sum_probs=166.4
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..++|+++||||++.||+.+++.|+++|++|++.+|+.+..++..+.... ...++..+.+|++|+++++++++.+
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTR---KGYDAHGVAFDVTDELAIEAAFSKLDA 82 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHH---TTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999965433222222211 2357889999999999998888654
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++. +.+...+||++||.+.+.+.
T Consensus 83 ~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~--------- 153 (255)
T 4g81_D 83 EGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAAR--------- 153 (255)
T ss_dssp TTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBC---------
T ss_pred HCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCC---------
Confidence 68999999997432 34566778899999999999888753 23333499999998865322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
+....|+.+|.+.+.+.+.++.++ ||+++.|.||.|..|.......-..+...+.+..|+. .
T Consensus 154 ---~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~------------R 218 (255)
T 4g81_D 154 ---PTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQ------------R 218 (255)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTC------------S
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCC------------C
Confidence 345789999999999999988774 8999999999998773211000012333333333332 2
Q ss_pred ceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 339 FTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+..++|+|.+++.++... ..-+| +++.+.+|-
T Consensus 219 ~g~pediA~~v~fL~S~~a~~iTG-----------~~i~VDGG~ 251 (255)
T 4g81_D 219 WGRPEELIGTAIFLSSKASDYING-----------QIIYVDGGW 251 (255)
T ss_dssp CBCGGGGHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred CcCHHHHHHHHHHHhCchhCCCcC-----------CEEEECCCe
Confidence 456799999998887543 33344 889887763
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=186.05 Aligned_cols=208 Identities=14% Similarity=0.094 Sum_probs=157.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc----
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV---- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~---- 191 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+... ..+.++.+|++|+++++++++.
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-------------~~~~~~~~D~~~~~~v~~~~~~~~~~ 71 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-------------SASVIVKMTDSFTEQADQVTAEVGKL 71 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-------------SEEEECCCCSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-------------CCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999765322 1457788999999998888873
Q ss_pred ---CCccEEEEccccCC-----hhhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCC
Q 011841 192 ---VPFTHVLHLAAQAG-----VRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 192 ---~~~d~Vi~~Ag~~~-----~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
-++|+||||||... .....++.+..+++|+.++..+++++...-. .++||++||.+.+...
T Consensus 72 ~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 141 (241)
T 1dhr_A 72 LGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT---------- 141 (241)
T ss_dssp HTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC----------
T ss_pred hCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCC----------
Confidence 26899999999743 2334456678899999999999998865311 1389999998876422
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|-.+ +........ ...
T Consensus 142 --~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~----------~~~~~~~~~------------~~~ 197 (241)
T 1dhr_A 142 --PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP----------MNRKSMPEA------------DFS 197 (241)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH----------HHHHHSTTS------------CGG
T ss_pred --CCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCc----------cccccCcch------------hhc
Confidence 355789999999999999988764 599999999998765 122211111 112
Q ss_pred eceeHHHHHHHHHHHHhhcCcC-CCCCCCCCCCCCceEEEEcCCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGKS-TGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~~-~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.++.++|+|++++.++...... +| +++++.++.
T Consensus 198 ~~~~~~~vA~~v~~l~~~~~~~~~G-----------~~~~v~g~~ 231 (241)
T 1dhr_A 198 SWTPLEFLVETFHDWITGNKRPNSG-----------SLIQVVTTD 231 (241)
T ss_dssp GSEEHHHHHHHHHHHHTTTTCCCTT-----------CEEEEEEET
T ss_pred cCCCHHHHHHHHHHHhcCCCcCccc-----------eEEEEeCCC
Confidence 3577899999999998654322 22 788887654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=185.17 Aligned_cols=211 Identities=15% Similarity=0.094 Sum_probs=153.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|++|||||+|+||+++++.|+++|++|++++|+.+.. ........ ...++.++.+|++|+++++++++..
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 80 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKL----RALGDELTAAGAKVHVLELDVADRQGVDAAVASTVE 80 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999954321 11111111 1347899999999999999888743
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+ ++||++||.+.+...
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~~~~~~~--------- 149 (247)
T 2jah_A 81 ALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSSIAGRVNV--------- 149 (247)
T ss_dssp HHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTCCC---------
T ss_pred HcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEccHHhcCCC---------
Confidence 67999999997432 22345567789999999999998874 334 499999998765321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.+.+.+.++.++ |+++++|+||.|.++....... ... .......+ + ...
T Consensus 150 ---~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~-~~~~~~~~---------~--~~~ 213 (247)
T 2jah_A 150 ---RNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHITH-TAT-KEMYEQRI---------S--QIR 213 (247)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCCC-HHH-HHHHHHHT---------T--TSC
T ss_pred ---CCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcccc-hhh-HHHHHhcc---------c--ccC
Confidence 355789999999999999887664 8999999999998874321111 111 11111100 0 011
Q ss_pred ceeHHHHHHHHHHHHhhcC
Q 011841 339 FTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~ 357 (476)
++.++|+|++++.++..+.
T Consensus 214 ~~~pedvA~~v~~l~s~~~ 232 (247)
T 2jah_A 214 KLQAQDIAEAVRYAVTAPH 232 (247)
T ss_dssp CBCHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHHHHHhCCCc
Confidence 5789999999999997654
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=189.67 Aligned_cols=214 Identities=13% Similarity=0.069 Sum_probs=158.2
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCch---HHHHHHhhh-cCCceEEEEeecCCHHHHHHhhc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS---LKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~---~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
..++|+||||||+|+||.+++++|+++|++|++++|+.+...+. +........ ...++.++.+|++|+++++++++
T Consensus 42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~ 121 (346)
T 3kvo_A 42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVE 121 (346)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 35789999999999999999999999999999999987654331 222222221 23478899999999999999887
Q ss_pred cC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCC
Q 011841 191 VV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 191 ~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
.+ ++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+. ++||++||...+....
T Consensus 122 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~-g~IV~iSS~~~~~~~~---- 196 (346)
T 3kvo_A 122 KAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKV-AHILNISPPLNLNPVW---- 196 (346)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSS-CEEEEECCCCCCCGGG----
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC-CEEEEECCHHHcCCCC----
Confidence 54 78999999997442 23345567889999999999999874 3343 4999999988654321
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
..+...|+.+|.+.+.+++.++.++ |+++++|+||++... .+.+.+.... .
T Consensus 197 ------~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T---------~~~~~~~~~~------------~ 249 (346)
T 3kvo_A 197 ------FKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT---------AAMDMLGGPG------------I 249 (346)
T ss_dssp ------TSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC---------HHHHHHCC--------------C
T ss_pred ------CCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc---------HHHHhhcccc------------c
Confidence 1456789999999999999988875 799999999974433 1222221111 1
Q ss_pred eEeceeHHHHHHHHHHHHhhcCcCC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGKST 360 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~~~ 360 (476)
...+..++|+|++++.++......+
T Consensus 250 ~~r~~~pedvA~~v~~L~s~~~~it 274 (346)
T 3kvo_A 250 ESQCRKVDIIADAAYSIFQKPKSFT 274 (346)
T ss_dssp GGGCBCTHHHHHHHHHHHTSCTTCC
T ss_pred cccCCCHHHHHHHHHHHHhcCCCCC
Confidence 2235678999999999998733334
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-21 Score=188.52 Aligned_cols=226 Identities=14% Similarity=0.036 Sum_probs=164.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEe-CCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHH---------
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD-NFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAP--------- 183 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~-R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~--------- 183 (476)
.++|+||||||+|+||+++++.|+++|++|++++ |+.+.. ....... ....++.++.+|++|.+
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~----~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEA----NALSATLNARRPNSAITVQADLSNVATAPVSGADG 82 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH----HHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHH----HHHHHHHhhhcCCeeEEEEeecCCccccccccccc
Confidence 5678999999999999999999999999999999 754221 1111111 11347899999999999
Q ss_pred --------HHHHhhccC-----CccEEEEccccCCh----hhh--------------hcChHHHHHHHHHHHHHHHHHHH
Q 011841 184 --------LLTKLFDVV-----PFTHVLHLAAQAGV----RYA--------------MQNPQSYVASNIAGFVNLLEVCK 232 (476)
Q Consensus 184 --------~l~~~~~~~-----~~d~Vi~~Ag~~~~----~~~--------------~~~~~~~~~~nv~gt~~ll~~a~ 232 (476)
++.++++.+ ++|+||||||.... +.. .++.+..+++|+.++..+++++.
T Consensus 83 ~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 162 (291)
T 1e7w_A 83 SAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 162 (291)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888888754 67999999997432 122 45566789999999999998875
Q ss_pred h----cCC-----CCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcc
Q 011841 233 S----VNP-----QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTV 300 (476)
Q Consensus 233 ~----~~~-----~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v 300 (476)
. .+. .++||++||...+.+. .+...|+.+|.+.+.+.+.++.++ |+++++|+||.|
T Consensus 163 ~~m~~~~~~~~~~~g~Iv~isS~~~~~~~------------~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v 230 (291)
T 1e7w_A 163 HRVAGTPAKHRGTNYSIINMVDAMTNQPL------------LGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLS 230 (291)
T ss_dssp HHHHTSCGGGSCSCEEEEEECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSB
T ss_pred HHHHhcCCCCCCCCcEEEEEechhhcCCC------------CCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCc
Confidence 3 330 2489999998865422 456789999999999999988764 899999999999
Q ss_pred cCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcC
Q 011841 301 YGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGN 379 (476)
Q Consensus 301 ~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~ 379 (476)
..+. . .. ..+...+....++ +. .+..++|+|++++.++.... ..+| +++++.+
T Consensus 231 ~T~~-~--~~-~~~~~~~~~~~p~--------~~---r~~~pedvA~~v~~l~s~~~~~itG-----------~~i~vdG 284 (291)
T 1e7w_A 231 VLVD-D--MP-PAVWEGHRSKVPL--------YQ---RDSSAAEVSDVVIFLCSSKAKYITG-----------TCVKVDG 284 (291)
T ss_dssp CCGG-G--SC-HHHHHHHHTTCTT--------TT---SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEEST
T ss_pred cCCc-c--CC-HHHHHHHHhhCCC--------CC---CCCCHHHHHHHHHHHhCCcccCccC-----------cEEEECC
Confidence 8775 2 11 2333333333222 10 25689999999999987543 2233 8899988
Q ss_pred CCcc
Q 011841 380 TSPV 383 (476)
Q Consensus 380 ~~~v 383 (476)
+..+
T Consensus 285 G~~~ 288 (291)
T 1e7w_A 285 GYSL 288 (291)
T ss_dssp TGGG
T ss_pred Cccc
Confidence 7543
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.9e-21 Score=178.98 Aligned_cols=200 Identities=17% Similarity=0.136 Sum_probs=147.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--CccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--PFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--~~d~ 196 (476)
|+||||||+|+||++++++|+++|++|++++|+.+ ......... ..++.++.+|++|.++++++++.+ .+|+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~ 75 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSES----KLSTVTNCL--SNNVGYRARDLASHQEVEQLFEQLDSIPST 75 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHH----HHHHHHHTC--SSCCCEEECCTTCHHHHHHHHHSCSSCCSE
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHHH--hhccCeEeecCCCHHHHHHHHHHHhhcCCE
Confidence 57999999999999999999999999999999432 111111111 357889999999999999999875 3699
Q ss_pred EEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC--CCeEEEecCccccCCCCCCCCCCCCCCCCCCChH
Q 011841 197 VLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP--QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLY 270 (476)
Q Consensus 197 Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~--~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y 270 (476)
||||||.... ....++.+..+++|+.++.++++++..... ..+||++||...+... .+...|
T Consensus 76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~------------~~~~~Y 143 (230)
T 3guy_A 76 VVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPK------------AQESTY 143 (230)
T ss_dssp EEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCC------------TTCHHH
T ss_pred EEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCC------------CCCchh
Confidence 9999997432 234455678899999999999998754321 1289999998876432 456789
Q ss_pred HHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHH
Q 011841 271 AATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (476)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (476)
+.+|.+.+.+++.++.++ |++++.|+||.|..+.... ... ......+++++|+|+
T Consensus 144 ~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----------~~~------------~~~~~~~~~~~dvA~ 201 (230)
T 3guy_A 144 CAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWET----------SGK------------SLDTSSFMSAEDAAL 201 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC--------------------------------------CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHHh----------cCC------------CCCcccCCCHHHHHH
Confidence 999999999999998886 7999999999998763211 100 111345789999999
Q ss_pred HHHHHHhhcCc
Q 011841 348 GCVGALDTAGK 358 (476)
Q Consensus 348 a~~~~l~~~~~ 358 (476)
+++.++..+..
T Consensus 202 ~i~~l~~~~~~ 212 (230)
T 3guy_A 202 MIHGALANIGN 212 (230)
T ss_dssp HHHHHCCEETT
T ss_pred HHHHHHhCcCC
Confidence 99999986654
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=187.67 Aligned_cols=205 Identities=15% Similarity=0.115 Sum_probs=150.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..+|+||||||+|+||++++++|+++|++|++++|+.+..+....... .....++.++.+|++|.++++++++.+
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 103 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCL--ELGAASAHYIAGTMEDMTFAEQFVAQAGKL 103 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--HHTCSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH--HhCCCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999995432211111111 011236899999999999998888743
Q ss_pred --CccEEEEc-cccCCh---hhhhcChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHL-AAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 --~~d~Vi~~-Ag~~~~---~~~~~~~~~~~~~nv~gt~~ll~~a~~~---~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+|||| ||.... ....++.+..+++|+.|+.++++++... +. ++||++||.+.+...
T Consensus 104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~----------- 171 (286)
T 1xu9_A 104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-GSIVVVSSLAGKVAY----------- 171 (286)
T ss_dssp HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEGGGTSCC-----------
T ss_pred cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCC-CEEEEECCcccccCC-----------
Confidence 67999999 565332 1233455678999999999999887432 22 499999998865422
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.+...|+.+|.+.|.+++.++.++ ++++++++||.|.++. ......+ .....
T Consensus 172 -~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~----------~~~~~~~------------~~~~~ 228 (286)
T 1xu9_A 172 -PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET----------AMKAVSG------------IVHMQ 228 (286)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH----------HHHHSCG------------GGGGG
T ss_pred -CCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh----------HHHhccc------------cccCC
Confidence 456789999999999999887765 8999999999997751 1111111 11134
Q ss_pred ceeHHHHHHHHHHHHhhcC
Q 011841 339 FTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~ 357 (476)
+++++|+|+.++.+++...
T Consensus 229 ~~~~~~vA~~i~~~~~~~~ 247 (286)
T 1xu9_A 229 AAPKEECALEIIKGGALRQ 247 (286)
T ss_dssp CBCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 6889999999999997754
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-21 Score=183.20 Aligned_cols=202 Identities=16% Similarity=0.138 Sum_probs=132.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHH---HhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLT---KLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~---~~~~~~ 192 (476)
.++|+||||||+|+||++++++|++ |+.|++++|+.+ . .....+..++.++.+|++|.+..+ +.++..
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~-------~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPE-------H-LAALAEIEGVEPIESDIVKEVLEEGGVDKLKNL 73 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHH-------H-HHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTC
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHH-------H-HHHHHhhcCCcceecccchHHHHHHHHHHHHhc
Confidence 4678999999999999999999987 999999998432 1 111222457999999998875522 222222
Q ss_pred -CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||..... .+.++.+..+++|+.++.++++++. +.+ .+||++||...+...
T Consensus 74 ~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~~~~~~----------- 140 (245)
T 3e9n_A 74 DHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGAGNGPH----------- 140 (245)
T ss_dssp SCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC-------------------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCcccccCC-----------
Confidence 679999999985432 2445567889999999888888763 333 489999998876532
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.+...|+.+|.+.+.+++.++.+ .|+++++|+||.|.++.... +.... + .......++
T Consensus 141 -~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~------~~~~~--~----------~~~~~~~~~ 201 (245)
T 3e9n_A 141 -PGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQG------LMDSQ--G----------TNFRPEIYI 201 (245)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------------------------------CCGGGS
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhh------hhhhh--h----------cccccccCC
Confidence 45678999999999999998876 48999999999999874221 11100 0 011123478
Q ss_pred eHHHHHHHHHHHHhhcCc
Q 011841 341 YIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~ 358 (476)
+++|+|++++.+++.+..
T Consensus 202 ~p~dvA~~i~~l~~~~~~ 219 (245)
T 3e9n_A 202 EPKEIANAIRFVIDAGET 219 (245)
T ss_dssp CHHHHHHHHHHHHTSCTT
T ss_pred CHHHHHHHHHHHHcCCCc
Confidence 999999999999987654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-21 Score=184.62 Aligned_cols=225 Identities=14% Similarity=0.078 Sum_probs=165.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||+++||+.+++.|+++|++|++++|+.+.. .+...+. ..++..+.+|++|+++++++++.+
T Consensus 27 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l----~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVL----DAAIAEI--GGGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHHc--CCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999964322 2222222 347888999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
++|++|||||.... +.+.++++..+++|+.++..+++++...-. ..++|++||...+.+. +
T Consensus 101 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~------------~ 168 (273)
T 4fgs_A 101 AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGT------------P 168 (273)
T ss_dssp HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCC------------T
T ss_pred cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCC------------C
Confidence 68999999997432 345567788999999999999998754221 1379999998754322 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC---C--cHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD---M--AYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~---~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
....|+.+|.+...+.+.++.++ ||+++.|.||.|..|..... . ....+.+.+.+.-|+.
T Consensus 169 ~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~Plg------------ 236 (273)
T 4fgs_A 169 AFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMG------------ 236 (273)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTS------------
T ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCC------------
Confidence 45689999999999999998775 79999999999988743211 0 1123444444444442
Q ss_pred eceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 338 DFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+..++|+|.+++.++... ..-+| +++.+.+|.
T Consensus 237 R~g~peeiA~~v~FLaSd~a~~iTG-----------~~i~VDGG~ 270 (273)
T 4fgs_A 237 RVGRAEEVAAAALFLASDDSSFVTG-----------AELFVDGGS 270 (273)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTT
T ss_pred CCcCHHHHHHHHHHHhCchhcCccC-----------CeEeECcCh
Confidence 2456799999999888543 33344 889887764
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-20 Score=182.75 Aligned_cols=226 Identities=15% Similarity=0.137 Sum_probs=161.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+. ....... ...++.++.+|++|.++++++++.+
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~----~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAER----LRELEVA--HGGNAVGVVGDVRSLQDQKRAAERCLAA 76 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHHHH--TBTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHH----HHHHHHH--cCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999985321 1222111 1357999999999999998888754
Q ss_pred --CccEEEEccccCChh---------hhhcChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCccccCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGVR---------YAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~~---------~~~~~~~~~~~~nv~gt~~ll~~a~~~~--~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|+||||||..... ...++.+..+++|+.++..+++++.... ...+||++||...+...
T Consensus 77 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 149 (281)
T 3zv4_A 77 FGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFYPN------- 149 (281)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTSSS-------
T ss_pred cCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhccCC-------
Confidence 789999999974321 1122356789999999999998874321 11489999998765322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeeCcccCCCCCCCCc------H--HHHHHHHHcCCceEEEee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRPDMA------Y--FFFTKDILQGKTIDVYKT 329 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~G~~~~~~~~------~--~~~~~~~~~g~~~~~~~~ 329 (476)
.+...|+.+|.+.+.+++.++.+++ +++++|+||.|..+....... . ..+...+....++
T Consensus 150 -----~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~----- 219 (281)
T 3zv4_A 150 -----GGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLKSVLPI----- 219 (281)
T ss_dssp -----SSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTTCC--------CCHHHHHHHTCTT-----
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccccccccccccchhHHHHHHhcCCC-----
Confidence 3456899999999999999988764 999999999998874321100 0 0011222222222
Q ss_pred CCCCceeEeceeHHHHHHHHHHHHhhcCc--CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 330 QDDREVARDFTYIDDVVKGCVGALDTAGK--STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~a~~~~l~~~~~--~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+..++|+|++++.++..+.. .+| +++++.++..
T Consensus 220 -------~r~~~pedvA~~v~fL~s~~~~~~itG-----------~~i~vdGG~~ 256 (281)
T 3zv4_A 220 -------GRMPALEEYTGAYVFFATRGDSLPATG-----------ALLNYDGGMG 256 (281)
T ss_dssp -------SSCCCGGGGSHHHHHHHSTTTSTTCSS-----------CEEEESSSGG
T ss_pred -------CCCCCHHHHHHHHHHhhcccccccccC-----------cEEEECCCCc
Confidence 2367789999999999974332 233 8999988754
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-20 Score=177.93 Aligned_cols=228 Identities=13% Similarity=0.026 Sum_probs=166.1
Q ss_pred CCCCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhc
Q 011841 115 RPNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 115 ~~~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
..++|+++||||+| +||.++++.|+++|++|++.+|+.+.. ++..... ....++.++.+|++|+++++++++
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 78 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSR----KELEKLLEQLNQPEAHLYQIDVQSDEEVINGFE 78 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGH----HHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHH----HHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHH
Confidence 36899999999876 899999999999999999999965422 2222222 223478999999999999988876
Q ss_pred cC-----CccEEEEccccCChh--------hhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCC
Q 011841 191 VV-----PFTHVLHLAAQAGVR--------YAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 191 ~~-----~~d~Vi~~Ag~~~~~--------~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~ 256 (476)
.+ ++|++|||||..... ...++....+++|+.++..+.+.+..... ..+||++||.+..-..
T Consensus 79 ~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~---- 154 (256)
T 4fs3_A 79 QIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAV---- 154 (256)
T ss_dssp HHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCC----
T ss_pred HHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCc----
Confidence 43 689999999975431 12233345678899998888887654322 2489999997753221
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
+....|+.+|.+.+.+.+.++.++ ||++++|.||.|-.+..........+.+.+.+..|+.
T Consensus 155 --------~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~-------- 218 (256)
T 4fs3_A 155 --------QNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPLK-------- 218 (256)
T ss_dssp --------TTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTS--------
T ss_pred --------ccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCCC--------
Confidence 455789999999999999988764 8999999999998875443333445556665554442
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+..++|+|++++.++.... .-+| +++.+.+|-
T Consensus 219 ----R~g~peevA~~v~fL~Sd~a~~iTG-----------~~i~VDGG~ 252 (256)
T 4fs3_A 219 ----RNVDQVEVGKTAAYLLSDLSSGVTG-----------ENIHVDSGF 252 (256)
T ss_dssp ----SCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred ----CCcCHHHHHHHHHHHhCchhcCccC-----------CEEEECcCH
Confidence 24568999999998885533 3344 888887763
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.1e-21 Score=183.38 Aligned_cols=206 Identities=17% Similarity=0.122 Sum_probs=152.5
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeec--CCHHHHHHhhcc
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL--NDAPLLTKLFDV 191 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~l~~~~~~ 191 (476)
...++|+||||||+|+||++++++|+++|++|++++|+.+..++...... .....++.++.+|+ +|.++++++++.
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~~~~d~d~~~~~~~~~~~~~ 87 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIK--SAGQPQPLIIALNLENATAQQYRELAAR 87 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--HTTSCCCEEEECCTTTCCHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHH--hcCCCCceEEEeccccCCHHHHHHHHHH
Confidence 34678999999999999999999999999999999996432222111111 11224677888888 999998888775
Q ss_pred C-----CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCC
Q 011841 192 V-----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 192 ~-----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
. ++|+||||||.... ..+.++.+..+++|+.++.++++++. +.+. ++||++||...+...
T Consensus 88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~iv~isS~~~~~~~----- 161 (247)
T 3i1j_A 88 VEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSED-ASIAFTSSSVGRKGR----- 161 (247)
T ss_dssp HHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-EEEEEECCGGGTSCC-----
T ss_pred HHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CeEEEEcchhhcCCC-----
Confidence 4 68999999997432 23445677899999999999999873 3443 489999998765322
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+ +........
T Consensus 162 -------~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~----------~~~~~~~~~----------- 213 (247)
T 3i1j_A 162 -------ANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTG----------MRAQAYPDE----------- 213 (247)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSH----------HHHHHSTTS-----------
T ss_pred -------CCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCc----------cchhccccc-----------
Confidence 456789999999999999988774 689999999998765 222222111
Q ss_pred ceeEeceeHHHHHHHHHHHHhhc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
....+..++|+|++++.++...
T Consensus 214 -~~~~~~~p~dva~~~~~l~s~~ 235 (247)
T 3i1j_A 214 -NPLNNPAPEDIMPVYLYLMGPD 235 (247)
T ss_dssp -CGGGSCCGGGGTHHHHHHHSGG
T ss_pred -CccCCCCHHHHHHHHHHHhCch
Confidence 1123567899999999988654
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=187.78 Aligned_cols=220 Identities=14% Similarity=0.074 Sum_probs=153.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHH---CCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKK---RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~---~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.++|++|||||+|+||++++++|++ +|++|++++|+.+..+........ .....++.++.+|++|+++++++++.+
T Consensus 4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (259)
T 1oaa_A 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGA-QQPDLKVVLAAADLGTEAGVQRLLSAV 82 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHH-HCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHh-hCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999 899999999954322111111111 011346899999999999988877643
Q ss_pred -------Ccc--EEEEccccCCh------h-hhhcChHHHHHHHHHHHHHHHHHHHhcCC-----CCeEEEecCccccCC
Q 011841 193 -------PFT--HVLHLAAQAGV------R-YAMQNPQSYVASNIAGFVNLLEVCKSVNP-----QPSIVWASSSSVYGL 251 (476)
Q Consensus 193 -------~~d--~Vi~~Ag~~~~------~-~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-----~~~~V~~SS~~vyg~ 251 (476)
++| +||||||.... + .+.++.+..+++|+.++.++++++...-. .++||++||.+.+.+
T Consensus 83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 162 (259)
T 1oaa_A 83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQP 162 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSC
T ss_pred HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcCC
Confidence 468 99999997432 1 23456678999999999999999865322 137999999887632
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEeeCcccCCCCCCCC---cHHHHHHHHHcCCceEEE
Q 011841 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLRFFTVYGPWGRPDM---AYFFFTKDILQGKTIDVY 327 (476)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilRp~~v~G~~~~~~~---~~~~~~~~~~~g~~~~~~ 327 (476)
. .+...|+.+|.+.+.+++.++.++ ++++++|+||.|-.+...... ........+...
T Consensus 163 ~------------~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~------ 224 (259)
T 1oaa_A 163 Y------------KGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKL------ 224 (259)
T ss_dssp C------------TTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHH------
T ss_pred C------------CCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCcchHHHHhhccCChhHHHHHHHh------
Confidence 1 456789999999999999999886 499999999998665210000 000000111100
Q ss_pred eeCCCCceeEeceeHHHHHHHHHHHHhhcCcCC
Q 011841 328 KTQDDREVARDFTYIDDVVKGCVGALDTAGKST 360 (476)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~ 360 (476)
.....+..++|+|++++.++......+
T Consensus 225 ------~p~~~~~~p~dvA~~v~~l~~~~~~it 251 (259)
T 1oaa_A 225 ------KSDGALVDCGTSAQKLLGLLQKDTFQS 251 (259)
T ss_dssp ------HHTTCSBCHHHHHHHHHHHHHHCCSCT
T ss_pred ------hhcCCcCCHHHHHHHHHHHHhhccccC
Confidence 001236789999999999997643333
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=174.68 Aligned_cols=226 Identities=15% Similarity=0.110 Sum_probs=165.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||+++++.|+++|++|++++|+.+... ..........++..+.+|++|+++++++++.+
T Consensus 5 L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~----~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~ 80 (258)
T 4gkb_A 5 LQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGA----FLDALAQRQPRATYLPVELQDDAQCRDAVAQTIAT 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHH----HHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHH----HHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999766421 11111222457899999999999988887653
Q ss_pred --CccEEEEccccCC---hhhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAG---VRYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~---~~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|++|||||... .+.+.++.+..+++|+.++..+.+++. +.+ .+||++||.+.+.+.
T Consensus 81 ~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--G~IVnisS~~~~~~~----------- 147 (258)
T 4gkb_A 81 FGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR--GAIVNISSKTAVTGQ----------- 147 (258)
T ss_dssp HSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTHHHHCC-----------
T ss_pred hCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEeehhhccCC-----------
Confidence 7899999999733 233455677899999999998888764 233 489999998754322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCC----cHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM----AYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
+....|+.+|.+.+.+.+.++.++ ||+++.|.||.|..|...... ........+....|+ +
T Consensus 148 -~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl--------g--- 215 (258)
T 4gkb_A 148 -GNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPL--------G--- 215 (258)
T ss_dssp -SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTT--------T---
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCC--------C---
Confidence 345789999999999999988764 899999999999887432110 011223333433333 1
Q ss_pred EeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 337 RDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++... ..-+| +++.+.+|-
T Consensus 216 ~R~g~peeiA~~v~fLaS~~a~~iTG-----------~~i~VDGG~ 250 (258)
T 4gkb_A 216 RRFTTPDEIADTAVFLLSPRASHTTG-----------EWLFVDGGY 250 (258)
T ss_dssp TSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTT
T ss_pred CCCcCHHHHHHHHHHHhCchhcCccC-----------CeEEECCCc
Confidence 13567899999998887543 33344 899998874
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=179.43 Aligned_cols=219 Identities=14% Similarity=0.083 Sum_probs=150.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
|+||||||+|+||++++++|+++|++|++++|+.+..+... ... . ....+..+ |. ++++++++.+ +
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~l~-~--~~~~~~~~--d~---~~v~~~~~~~~~~~g~ 72 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE-AFA-E--TYPQLKPM--SE---QEPAELIEAVTSAYGQ 72 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH-HHH-H--HCTTSEEC--CC---CSHHHHHHHHHHHHSC
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HHH-h--cCCcEEEE--CH---HHHHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999654322211 111 1 12234433 44 4444444422 6
Q ss_pred ccEEEEccccC-Ch----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQA-GV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 194 ~d~Vi~~Ag~~-~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
+|+||||||.. .. ..+.++.+..+++|+.++.++++++. +.+. ++||++||...+...
T Consensus 73 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------------ 139 (254)
T 1zmt_A 73 VDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKS-GHIIFITSATPFGPW------------ 139 (254)
T ss_dssp CCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCSTTTSCC------------
T ss_pred CCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECCcccccCC------------
Confidence 79999999975 21 22345567899999999999988874 3444 499999998865322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHH------HHHHHHHcCCceEEEeeCCCCce
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYF------FFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~------~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|+||......... .+...+....+
T Consensus 140 ~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p------------ 207 (254)
T 1zmt_A 140 KELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTA------------ 207 (254)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSS------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccCC------------
Confidence 355789999999999999988774 899999999999887543221111 11111111111
Q ss_pred eEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
...+..++|+|++++.++..+.. .+| +++++.++..
T Consensus 208 ~~~~~~p~dvA~~v~~l~s~~~~~~tG-----------~~~~vdgG~~ 244 (254)
T 1zmt_A 208 LQRLGTQKELGELVAFLASGSCDYLTG-----------QVFWLAGGFP 244 (254)
T ss_dssp SSSCBCHHHHHHHHHHHHTTSCGGGTT-----------CEEEESTTCC
T ss_pred CCCCcCHHHHHHHHHHHhCcccCCccC-----------CEEEECCCch
Confidence 12367899999999999876432 233 8999988753
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-20 Score=185.53 Aligned_cols=213 Identities=14% Similarity=0.053 Sum_probs=149.7
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH-HHHHHhhccC
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA-PLLTKLFDVV 192 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~~~ 192 (476)
.+..+|+||||||+|+||++++++|+++|++|++++|+.+...+...... .....++.++.+|++|. ++++++++.+
T Consensus 8 ~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~--~~~~~~~~~~~~Dl~~~~~~v~~~~~~~ 85 (311)
T 3o26_A 8 TVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLK--NSNHENVVFHQLDVTDPIATMSSLADFI 85 (311)
T ss_dssp ----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--TTTCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--hcCCCceEEEEccCCCcHHHHHHHHHHH
Confidence 34578899999999999999999999999999999996532222111111 11124799999999998 8887777633
Q ss_pred -----CccEEEEccccCCh----------------------------------hhhhcChHHHHHHHHHHHHHHHHHHH-
Q 011841 193 -----PFTHVLHLAAQAGV----------------------------------RYAMQNPQSYVASNIAGFVNLLEVCK- 232 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~----------------------------------~~~~~~~~~~~~~nv~gt~~ll~~a~- 232 (476)
++|+||||||.... ....++.+..+++|+.|+..+++++.
T Consensus 86 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 165 (311)
T 3o26_A 86 KTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIP 165 (311)
T ss_dssp HHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhH
Confidence 67999999998532 11234456779999999999988864
Q ss_pred ---hcCCCCeEEEecCccccCCCCC-------------------------------CCCCCCCCCCCCCChHHHHHHHHH
Q 011841 233 ---SVNPQPSIVWASSSSVYGLNTQ-------------------------------VPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 233 ---~~~~~~~~V~~SS~~vyg~~~~-------------------------------~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
+.+. ++||++||...+..... ....+......+...|+.+|.+.+
T Consensus 166 ~l~~~~~-~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~ 244 (311)
T 3o26_A 166 LLQLSDS-PRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLN 244 (311)
T ss_dssp HHTTSSS-CEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHH
T ss_pred hhccCCC-CeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHH
Confidence 3333 49999999875432110 001111111134578999999999
Q ss_pred HHHHHHHHHh-CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 279 EIAHTYNHIY-GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 279 ~~~~~~~~~~-gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
.+++.++.++ ++++++|+||.|.++.... ......++.++.++.++..+.
T Consensus 245 ~~~~~la~e~~~i~v~~v~PG~v~T~~~~~-----------------------------~~~~~~~~~a~~~~~~~~~~~ 295 (311)
T 3o26_A 245 AYTRVLANKIPKFQVNCVCPGLVKTEMNYG-----------------------------IGNYTAEEGAEHVVRIALFPD 295 (311)
T ss_dssp HHHHHHHHHCTTSEEEEECCCSBCSGGGTT-----------------------------CCSBCHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHhhcCCceEEEecCCceecCCcCC-----------------------------CCCCCHHHHHHHHHHHHhCCC
Confidence 9999999886 6999999999998763211 012467899999999887665
Q ss_pred c
Q 011841 358 K 358 (476)
Q Consensus 358 ~ 358 (476)
.
T Consensus 296 ~ 296 (311)
T 3o26_A 296 D 296 (311)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-20 Score=178.95 Aligned_cols=208 Identities=14% Similarity=0.103 Sum_probs=152.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc---hHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP---SLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~---~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+..+. ......... ....++.++.+|++|+++++++++.
T Consensus 4 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 83 (274)
T 3e03_A 4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA 83 (274)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence 567999999999999999999999999999999998765332 122222221 1245789999999999999988875
Q ss_pred C-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCC
Q 011841 192 V-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 192 ~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
+ ++|+||||||.... ..+.++.+..+++|+.++..+++++.. .+. ++||++||...+....
T Consensus 84 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~~----- 157 (274)
T 3e03_A 84 TVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPN-PHILTLAPPPSLNPAW----- 157 (274)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSS-CEEEECCCCCCCCHHH-----
T ss_pred HHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCC-ceEEEECChHhcCCCC-----
Confidence 4 68999999997532 233455677899999999999998743 333 4999999987653210
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCccc-CCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVY-GPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
..+...|+.+|.+.+.+++.++.++ |+++++|+||.+. .+.. ....+.
T Consensus 158 -----~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~~~-----------~~~~~~------------ 209 (274)
T 3e03_A 158 -----WGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAI-----------NMLPGV------------ 209 (274)
T ss_dssp -----HHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC------------------CC------------
T ss_pred -----CCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccchh-----------hhcccc------------
Confidence 1345679999999999999988774 7999999999543 3311 111111
Q ss_pred eeEeceeHHHHHHHHHHHHhhcC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
....+..++|+|++++.++....
T Consensus 210 ~~~~~~~pedvA~~v~~l~s~~~ 232 (274)
T 3e03_A 210 DAAACRRPEIMADAAHAVLTREA 232 (274)
T ss_dssp CGGGSBCTHHHHHHHHHHHTSCC
T ss_pred cccccCCHHHHHHHHHHHhCccc
Confidence 11226789999999999987644
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=178.38 Aligned_cols=215 Identities=18% Similarity=0.075 Sum_probs=146.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||+|+||++++++|+++|++|++++|+.+.. ........ ...++.++.+|++|+++++++++.+
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTL----RVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDR 78 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----HHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999854321 11111111 1347889999999999988877642
Q ss_pred ----CccEEEEccc--cC-------C--hhhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCC
Q 011841 193 ----PFTHVLHLAA--QA-------G--VRYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNT 253 (476)
Q Consensus 193 ----~~d~Vi~~Ag--~~-------~--~~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~ 253 (476)
++|+|||||| .. . .....++.+..+++|+.++..+.+++. +.+. ++||++||...+..
T Consensus 79 ~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~-- 155 (260)
T 2qq5_A 79 EQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQ-GLIVVISSPGSLQY-- 155 (260)
T ss_dssp HHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTC-CEEEEECCGGGTSC--
T ss_pred hcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCC-cEEEEEcChhhcCC--
Confidence 5799999994 21 1 122334456788899999887776653 4444 49999999886531
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeC
Q 011841 254 QVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 254 ~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.|.++........... .........
T Consensus 156 -----------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~~~~----~~~~~~~~~--- 217 (260)
T 2qq5_A 156 -----------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTELLKEHMAKEEV----LQDPVLKQF--- 217 (260)
T ss_dssp -----------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTTC-------------------------
T ss_pred -----------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHHHHHhhccccc----cchhHHHHH---
Confidence 23468999999999999998865 489999999999988743211000000 000000000
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
......+..++|+|++++.++..+.
T Consensus 218 --~~~~~~~~~pe~va~~v~~l~s~~~ 242 (260)
T 2qq5_A 218 --KSAFSSAETTELSGKCVVALATDPN 242 (260)
T ss_dssp ------CHHHHHHHHHHHHHHHHTCTT
T ss_pred --HhhhccCCCHHHHHHHHHHHhcCcc
Confidence 0001124678999999999887653
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.7e-20 Score=182.60 Aligned_cols=269 Identities=14% Similarity=0.082 Sum_probs=175.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC-----CCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY-----YDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~-----~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
..+|+||||||+|+||+++++.|+++|++|++++|.... ............... +.. +.+|+.|.++++++++
T Consensus 7 l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~-~~~-~~~D~~~~~~~~~~~~ 84 (319)
T 1gz6_A 7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRR-GGK-AVANYDSVEAGEKLVK 84 (319)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHT-TCE-EEEECCCGGGHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhh-CCe-EEEeCCCHHHHHHHHH
Confidence 567899999999999999999999999999998764211 111222222222122 222 3589999988777665
Q ss_pred cC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCcc-ccCCCCCCC
Q 011841 191 VV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSS-VYGLNTQVP 256 (476)
Q Consensus 191 ~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~-vyg~~~~~~ 256 (476)
.. ++|+||||||.... ..+.++.+..+++|+.|+.++++++ ++.+.. +||++||.+ .++.
T Consensus 85 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-rIV~vsS~~~~~~~----- 158 (319)
T 1gz6_A 85 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYG-RIIMTASASGIYGN----- 158 (319)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHHHCC-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECChhhccCC-----
Confidence 32 67999999997543 2344567789999999999998886 344543 999999975 4432
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.+...|+.+|.+.+.+++.++.+ +|+++++|+||.+ .+.... .. .
T Consensus 159 --------~~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~~--~~---------------------~ 206 (319)
T 1gz6_A 159 --------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTET--VM---------------------P 206 (319)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTGG--GS---------------------C
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-cccccc--cC---------------------C
Confidence 34578999999999999998876 4899999999987 431110 00 0
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCC
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV 413 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~ 413 (476)
.....++.++|+|.+++.++..+...+| ++|++.++...... ..... -.... .
T Consensus 207 ~~~~~~~~p~dvA~~~~~l~s~~~~~tG-----------~~~~v~GG~~~~~~---------~~~~~-~~~~~------~ 259 (319)
T 1gz6_A 207 EDLVEALKPEYVAPLVLWLCHESCEENG-----------GLFEVGAGWIGKLR---------WERTL-GAIVR------K 259 (319)
T ss_dssp HHHHHHSCGGGTHHHHHHHTSTTCCCCS-----------CEEEEETTEEEEEE---------EEECC-CEECC------B
T ss_pred hhhhccCCHHHHHHHHHHHhCchhhcCC-----------CEEEECCCeEEEEe---------eeecc-ceecc------C
Confidence 0112346789999999998876443333 88988876431110 00000 00000 0
Q ss_pred CcccccHHHH-------HHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 414 PYTHANVSLA-------YKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 414 ~~~~~d~~ka-------~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
.....|.+.+ .+..|++...++.+.++.++++..+...
T Consensus 260 ~~~~~~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (319)
T 1gz6_A 260 RNQPMTPEAVRDNWVKICDFSNASKPKSIQESTGGIIEVLHKIDS 304 (319)
T ss_dssp TTBCCCHHHHHHTHHHHTCCTTCBCCCCHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCHHHHHHHHHHhhccccccCCCchHHHHHHHHHHHhhccc
Confidence 0111233332 2445777667899999999987765544
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=173.47 Aligned_cols=218 Identities=14% Similarity=0.051 Sum_probs=158.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||+++++.|+++|++|++++|..... ......+.+|++|+++++++++.+
T Consensus 9 L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-------------~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (261)
T 4h15_A 9 LRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG-------------LPEELFVEADLTTKEGCAIVAEATRQR 75 (261)
T ss_dssp CTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT-------------SCTTTEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC-------------CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999965421 113346889999999988887643
Q ss_pred --CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++ ++.+. .+||++||...+-+.
T Consensus 76 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~Iv~isS~~~~~~~-------- 146 (261)
T 4h15_A 76 LGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGS-GVVVHVTSIQRVLPL-------- 146 (261)
T ss_dssp TSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC--------
T ss_pred cCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCC-ceEEEEEehhhccCC--------
Confidence 68999999996321 3345667789999999998888775 34454 389999997754211
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC-----------C-CcHHHHHHHHHcCCceE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP-----------D-MAYFFFTKDILQGKTID 325 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~-----------~-~~~~~~~~~~~~g~~~~ 325 (476)
......|+.+|.+.+.+.+.++.++ ||++++|.||.|-.|.... + .....+.......-|+
T Consensus 147 ---~~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl- 222 (261)
T 4h15_A 147 ---PESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKIIMDGLGGIPL- 222 (261)
T ss_dssp ---TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCTT-
T ss_pred ---CCccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHHHHHHhcCCCC-
Confidence 0235679999999999999988774 8999999999997652110 0 0011222223333333
Q ss_pred EEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 326 VYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++.... .-+| +++.+.+|-
T Consensus 223 -----------gR~g~peevA~~v~fLaS~~a~~itG-----------~~i~VDGG~ 257 (261)
T 4h15_A 223 -----------GRPAKPEEVANLIAFLASDRAASITG-----------AEYTIDGGT 257 (261)
T ss_dssp -----------SSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTC
T ss_pred -----------CCCcCHHHHHHHHHHHhCchhcCccC-----------cEEEECCcC
Confidence 235678999999998875433 3344 899998774
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=175.75 Aligned_cols=226 Identities=13% Similarity=0.047 Sum_probs=159.1
Q ss_pred CCCCEEEEECC--CChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGa--tG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+|||||| +|+||+++++.|+++|++|++++|+.+. ...... ... ..++.++.+|++|+++++++++.+
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~-~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR---LIQRIT-DRL-PAKAPLLELDVQNEEHLASLAGRVT 79 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHH---HHHHHH-TTS-SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHH---HHHHHH-Hhc-CCCceEEEccCCCHHHHHHHHHHHH
Confidence 46789999999 9999999999999999999999985421 011111 111 236889999999999999888743
Q ss_pred -------CccEEEEccccCCh---------hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCC
Q 011841 193 -------PFTHVLHLAAQAGV---------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQV 255 (476)
Q Consensus 193 -------~~d~Vi~~Ag~~~~---------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~ 255 (476)
++|+||||||.... ..+.++.+..+++|+.++.++++++...-. ..+||++||...++
T Consensus 80 ~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~----- 154 (269)
T 2h7i_A 80 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA----- 154 (269)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC-----
T ss_pred HHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc-----
Confidence 67999999997541 223455667899999999999999865321 13899999876532
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC------CCCcH----HHHHHHHHcCC
Q 011841 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR------PDMAY----FFFTKDILQGK 322 (476)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~------~~~~~----~~~~~~~~~g~ 322 (476)
......|+.+|.+.+.+++.++.++ |+++++|+||.|..+... ..... ..+...+....
T Consensus 155 --------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (269)
T 2h7i_A 155 --------MPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRA 226 (269)
T ss_dssp --------CTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHC
T ss_pred --------cCchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhhccccccchhhHHHHHHHHHHhhhccC
Confidence 1345789999999999999988775 899999999999775210 00000 00111111111
Q ss_pred ceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 323 TIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 323 ~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
++ + +.+..++|+|++++.++.... ..+| +++++.++.
T Consensus 227 p~--------~---rr~~~p~dvA~~v~~L~s~~~~~itG-----------~~i~vdGG~ 264 (269)
T 2h7i_A 227 PI--------G---WNMKDATPVAKTVCALLSDWLPATTG-----------DIIYADGGA 264 (269)
T ss_dssp TT--------C---CCTTCCHHHHHHHHHHHSSSCTTCCS-----------EEEEESTTG
T ss_pred Cc--------c---cCCCCHHHHHHHHHHHhCchhccCcc-----------eEEEecCCe
Confidence 11 0 135677999999999986533 2233 889988774
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=188.44 Aligned_cols=210 Identities=21% Similarity=0.156 Sum_probs=153.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..+++||||||+|+||.++++.|+++|++ |++++|+...... ..+...... ...++.++.+|++|.+++.++++.+
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~-~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~ 302 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADG-AGELVAELEALGARTTVAACDVTDRESVRELLGGIG 302 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTT-HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHH-HHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999999995 9999996542221 112222111 2347899999999999999999876
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
++|+||||||.... ..+.++.+..+++|+.|+.+|+++++..+.. +||++||++.+-+. .
T Consensus 303 ~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~-~~V~~SS~a~~~g~------------~ 369 (486)
T 2fr1_A 303 DDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLT-AFVLFSSFASAFGA------------P 369 (486)
T ss_dssp TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTCC------------T
T ss_pred hcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCC-EEEEEcChHhcCCC------------C
Confidence 67999999997543 2234456678899999999999999888765 99999997643222 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHH
Q 011841 266 PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (476)
....|+.+|...+.+.+++.. .|+++++|+||.+++++.... .. .... ......+++++|+
T Consensus 370 g~~~Yaaaka~l~~la~~~~~-~gi~v~~i~pG~~~~~gm~~~---------~~----~~~~-----~~~g~~~i~~e~~ 430 (486)
T 2fr1_A 370 GLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAEG---------PV----ADRF-----RRHGVIEMPPETA 430 (486)
T ss_dssp TCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-------------------------C-----TTTTEECBCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCeeCCCcccch---------hH----HHHH-----HhcCCCCCCHHHH
Confidence 457899999999999887665 499999999999987632110 00 0001 1122467999999
Q ss_pred HHHHHHHHhhcCc
Q 011841 346 VKGCVGALDTAGK 358 (476)
Q Consensus 346 a~a~~~~l~~~~~ 358 (476)
++++..++.....
T Consensus 431 a~~l~~~l~~~~~ 443 (486)
T 2fr1_A 431 CRALQNALDRAEV 443 (486)
T ss_dssp HHHHHHHHHTTCS
T ss_pred HHHHHHHHhCCCC
Confidence 9999999987543
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-19 Score=180.78 Aligned_cols=174 Identities=15% Similarity=0.109 Sum_probs=135.1
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh---hcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL---LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~---~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
+|+||||||+|+||++++++|+++|++|++++|.....+.......... ....++.++.+|++|.++++++++.+
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999886654433222221110 11247899999999999999998864
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|+||||||.... ....++.+..+++|+.++.++++++ ++.+.. +||++||.+.+...
T Consensus 82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g-~IV~isS~~~~~~~----------- 149 (327)
T 1jtv_A 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSG-RVLVTGSVGGLMGL----------- 149 (327)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEEEEGGGTSCC-----------
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEECCcccccCC-----------
Confidence 57999999997432 2234556789999999999999986 344543 99999998765321
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHH---hCCcEEEEeeCcccCCC
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHI---YGLALTGLRFFTVYGPW 304 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~---~gi~~~ilRp~~v~G~~ 304 (476)
.....|+.+|.+.+.+++.++.+ +|+++++|+||.|.++.
T Consensus 150 -~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 150 -PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred -CCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 34568999999999999998875 58999999999998874
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.9e-19 Score=183.89 Aligned_cols=223 Identities=15% Similarity=0.041 Sum_probs=159.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
..++++|||||+|+||.++++.|+++|++|++++|... ...........++.++.+|++|.++++++++.+
T Consensus 211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~------~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~ 284 (454)
T 3u0b_A 211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGA------AEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEH 284 (454)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGG------HHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCcc------HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998432 111112222236789999999999998888643
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc----CCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV----NPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~----~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|+||||||.... ..+.++.+..+++|+.|+.++.+++... +. .+||++||.+.+.+.
T Consensus 285 ~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~-g~iV~iSS~a~~~g~--------- 354 (454)
T 3u0b_A 285 HGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEG-GRVIGLSSMAGIAGN--------- 354 (454)
T ss_dssp STTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTT-CEEEEECCHHHHHCC---------
T ss_pred cCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CEEEEEeChHhCCCC---------
Confidence 48999999998543 2344566788999999999999998765 33 489999998755322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.....|+.+|.+.+.+++.++.++ |+++++|+||.|.++....... .......... ....
T Consensus 355 ---~g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~--~~~~~~~~~~------------~l~r 417 (454)
T 3u0b_A 355 ---RGQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEAIPL--ATREVGRRLN------------SLFQ 417 (454)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC------------CHHHHHSB------------TTSS
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhhcch--hhHHHHHhhc------------cccC
Confidence 456789999999999988887664 8999999999998874321100 0000001111 1123
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
+..++|+|++++.++.... ..+| +++++.++..
T Consensus 418 ~g~pedvA~~v~fL~s~~a~~itG-----------~~i~vdGG~~ 451 (454)
T 3u0b_A 418 GGQPVDVAELIAYFASPASNAVTG-----------NTIRVCGQAM 451 (454)
T ss_dssp CBCHHHHHHHHHHHHCGGGTTCCS-----------CEEEESSSBS
T ss_pred CCCHHHHHHHHHHHhCCccCCCCC-----------cEEEECCccc
Confidence 4678999999998886543 2333 8999988653
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-19 Score=168.64 Aligned_cols=215 Identities=12% Similarity=0.029 Sum_probs=145.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEE-e--CCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-D--NFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD---- 190 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~-~--R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 190 (476)
+|+||||||+|+||+++++.|+++|++|+++ + |+.+ ......... .+..+ .|.++++++++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~----~~~~~~~~~---~~~~~-----~~~~~v~~~~~~~~~ 68 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAA----ERQRFESEN---PGTIA-----LAEQKPERLVDATLQ 68 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHH----HHHHHHHHS---TTEEE-----CCCCCGGGHHHHHGG
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHH----HHHHHHHHh---CCCcc-----cCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999 5 8432 112222221 23332 24444443333
Q ss_pred cC-CccEEEEccccCCh-------hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCC
Q 011841 191 VV-PFTHVLHLAAQAGV-------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 191 ~~-~~d~Vi~~Ag~~~~-------~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
.. ++|+||||||.... +...++.+..+++|+.++.++++++. +.+. ++||++||...+...
T Consensus 69 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-g~iv~isS~~~~~~~------ 141 (244)
T 1zmo_A 69 HGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGG-ASVIFITSSVGKKPL------ 141 (244)
T ss_dssp GSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCGGGTSCC------
T ss_pred HcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-cEEEEECChhhCCCC------
Confidence 22 67999999997533 22345567799999999999998874 4444 499999998876432
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCC---CCCCcHHHHHHHHHc-CCceEEEeeCC
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWG---RPDMAYFFFTKDILQ-GKTIDVYKTQD 331 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~---~~~~~~~~~~~~~~~-g~~~~~~~~~~ 331 (476)
.+...|+.+|.+.+.+++.++.++ |+++++|+||.|..+.. .. ..-......+.. ..++
T Consensus 142 ------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~-~~~~~~~~~~~~~~~p~------- 207 (244)
T 1zmo_A 142 ------AYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSD-WENNPELRERVDRDVPL------- 207 (244)
T ss_dssp ------TTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHH-HHHCHHHHHHHHHHCTT-------
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccccc-ccchHHHHHHHhcCCCC-------
Confidence 345789999999999999988764 89999999999987743 10 000011111211 1111
Q ss_pred CCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 332 DREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 332 ~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++..... .+| +++.+.++.
T Consensus 208 -----~r~~~pe~vA~~v~~l~s~~~~~~tG-----------~~i~vdgG~ 242 (244)
T 1zmo_A 208 -----GRLGRPDEMGALITFLASRRAAPIVG-----------QFFAFTGGY 242 (244)
T ss_dssp -----CSCBCHHHHHHHHHHHHTTTTGGGTT-----------CEEEESTTC
T ss_pred -----CCCcCHHHHHHHHHHHcCccccCccC-----------CEEEeCCCC
Confidence 1367899999999999876432 233 888887763
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=171.57 Aligned_cols=225 Identities=12% Similarity=0.030 Sum_probs=152.7
Q ss_pred CCCCEEEEECCC--ChhhHHHHHHHHHCCCeEEEEeCCC-----------CCCCchHHHHHHhhhcCCc----eEEEEee
Q 011841 116 PNGMTVLVTGAA--GFVGSHCSLALKKRGDGVLGLDNFN-----------SYYDPSLKRARQKLLQKHQ----VFIVEGD 178 (476)
Q Consensus 116 ~~~~~VLVtGat--G~IG~~l~~~L~~~G~~V~~~~R~~-----------~~~~~~~~~~~~~~~~~~~----v~~~~~D 178 (476)
.++|++|||||+ |+||++++++|+++|++|++++|.. ...+.. ..+.... ...+.+|
T Consensus 6 l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 79 (297)
T 1d7o_A 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQS------RVLPDGSLMEIKKVYPLD 79 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGG------GBCTTSSBCCEEEEEEEC
T ss_pred cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhh------hhhccccccccccccccc
Confidence 467899999999 9999999999999999999998631 111100 0000111 2344443
Q ss_pred c--------C----C--------HHHHHHhhccC-----CccEEEEccccCC------hhhhhcChHHHHHHHHHHHHHH
Q 011841 179 L--------N----D--------APLLTKLFDVV-----PFTHVLHLAAQAG------VRYAMQNPQSYVASNIAGFVNL 227 (476)
Q Consensus 179 l--------~----d--------~~~l~~~~~~~-----~~d~Vi~~Ag~~~------~~~~~~~~~~~~~~nv~gt~~l 227 (476)
+ . | +++++++++.+ ++|+||||||... ...+.++.+..+++|+.++.++
T Consensus 80 ~~~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l 159 (297)
T 1d7o_A 80 AVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSL 159 (297)
T ss_dssp TTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred eeccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHH
Confidence 2 2 2 44566555432 6799999998632 1334456678999999999999
Q ss_pred HHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEEEEeeCccc
Q 011841 228 LEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVY 301 (476)
Q Consensus 228 l~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~ 301 (476)
++++...-. .++||++||...+... +.. ..|+.+|.+.+.+++.++.+ +|+++++|+||.|.
T Consensus 160 ~~~~~~~m~~~g~iv~isS~~~~~~~------------~~~~~~Y~asKaa~~~~~~~la~e~~~~~gi~vn~v~PG~v~ 227 (297)
T 1d7o_A 160 LSHFLPIMNPGGASISLTYIASERII------------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLG 227 (297)
T ss_dssp HHHHGGGEEEEEEEEEEECGGGTSCC------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCB
T ss_pred HHHHHHHhccCceEEEEeccccccCC------------CCcchHHHHHHHHHHHHHHHHHHHhCcccCcEEEEEeccccc
Confidence 999875411 1389999998765321 223 47999999999999988765 58999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 302 GPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 302 G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
++..........+...+....++ ..+..++|+|++++.++.... ..+| +++++.++
T Consensus 228 T~~~~~~~~~~~~~~~~~~~~p~------------~r~~~pedvA~~v~~l~s~~~~~itG-----------~~i~vdgG 284 (297)
T 1d7o_A 228 SRAAKAIGFIDTMIEYSYNNAPI------------QKTLTADEVGNAAAFLVSPLASAITG-----------ATIYVDNG 284 (297)
T ss_dssp CCCSSCCSHHHHHHHHHHHHSSS------------CCCBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTT
T ss_pred cchhhhccccHHHHHHhhccCCC------------CCCCCHHHHHHHHHHHhCccccCCCC-----------CEEEECCC
Confidence 98654322223333333332222 125689999999999886533 2233 89999887
Q ss_pred C
Q 011841 381 S 381 (476)
Q Consensus 381 ~ 381 (476)
.
T Consensus 285 ~ 285 (297)
T 1d7o_A 285 L 285 (297)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=183.26 Aligned_cols=227 Identities=18% Similarity=0.157 Sum_probs=163.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
..+++||||||+|+||.++++.|+++|+ .|++++|+...... ......... ...++.++.+|++|.+++.++++..+
T Consensus 257 ~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~-~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ 335 (511)
T 2z5l_A 257 QPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPG-AAELAEELRGHGCEVVHAACDVAERDALAALVTAYP 335 (511)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTT-HHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHH-HHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCC
Confidence 4568999999999999999999999999 58889986532221 122222221 13468999999999999999998756
Q ss_pred ccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCcc-ccCCCCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSS-VYGLNTQVPFSESHRTDQPA 267 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~-vyg~~~~~~~~E~~~~~~p~ 267 (476)
+|+||||||.... ....+..+..+++|+.|+.+|.+++... +.. +||++||++ ++|. .+.
T Consensus 336 ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~-~~V~~SS~a~~~g~-------------~g~ 401 (511)
T 2z5l_A 336 PNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLD-AFVLFSSVTGTWGN-------------AGQ 401 (511)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCC-CEEEEEEGGGTTCC-------------TTB
T ss_pred CcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCC-EEEEEeCHHhcCCC-------------CCC
Confidence 7999999998543 2233455678899999999999998876 554 999999975 4432 345
Q ss_pred ChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHH
Q 011841 268 SLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347 (476)
Q Consensus 268 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~ 347 (476)
..|+.+|...|.+++.+.. .|+++++|+||.+.+.+.... .. ...+... + ..+++++|+++
T Consensus 402 ~~YaaaKa~ld~la~~~~~-~gi~v~sv~pG~~~~tgm~~~-~~---~~~~~~~-----------g---~~~l~~e~~a~ 462 (511)
T 2z5l_A 402 GAYAAANAALDALAERRRA-AGLPATSVAWGLWGGGGMAAG-AG---EESLSRR-----------G---LRAMDPDAAVD 462 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TTCCCEEEEECCBCSTTCCCC-HH---HHHHHHH-----------T---BCCBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCcEEEEECCcccCCccccc-cc---HHHHHhc-----------C---CCCCCHHHHHH
Confidence 7899999999999988754 599999999998843322211 11 1111110 1 23688999999
Q ss_pred HHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHH
Q 011841 348 GCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILEN 394 (476)
Q Consensus 348 a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~ 394 (476)
++..++..... .++ +.. +.|..+...+..
T Consensus 463 ~l~~al~~~~~--------------~v~-v~~---~d~~~~~~~~~~ 491 (511)
T 2z5l_A 463 ALLGAMGRNDV--------------CVT-VVD---VDWERFAPATNA 491 (511)
T ss_dssp HHHHHHHHTCS--------------EEE-ECC---BCHHHHHHHHHH
T ss_pred HHHHHHhCCCC--------------EEE-EEe---CCHHHHHhhhcc
Confidence 99999987543 333 433 557777665544
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-17 Score=175.16 Aligned_cols=209 Identities=18% Similarity=0.135 Sum_probs=153.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC---
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
+++||||||+|+||.++++.|+++|+ .|+++.|....... ..+...... ...++.++.+|++|.+++.++++.+
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~-~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~ 317 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPG-AAELRAELEQLGVRVTIAACDAADREALAALLAELPED 317 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTT-HHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHH-HHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999999998 78888885432222 122222221 2347899999999999999998764
Q ss_pred -CccEEEEccccC-Ch----hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQA-GV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 193 -~~d~Vi~~Ag~~-~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
++|+||||||.. .. ..+.+..+..+++|+.|+.++.+++...+.. +||++||++.+-+. ..
T Consensus 318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~-~iV~~SS~a~~~g~------------~g 384 (496)
T 3mje_A 318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLD-AFVLFSSGAAVWGS------------GG 384 (496)
T ss_dssp SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTTC------------TT
T ss_pred CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCC-EEEEEeChHhcCCC------------CC
Confidence 689999999985 21 2334556788999999999999999888765 99999997644222 45
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHH
Q 011841 267 ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (476)
...|+.+|...+.+.+++.. .|+++++|+||.+.+++...+. .....+.+.+ ...+..++.+
T Consensus 385 ~~~YaAaKa~ldala~~~~~-~Gi~v~sV~pG~w~~~gm~~~~---~~~~~l~~~g--------------~~~l~pe~~~ 446 (496)
T 3mje_A 385 QPGYAAANAYLDALAEHRRS-LGLTASSVAWGTWGEVGMATDP---EVHDRLVRQG--------------VLAMEPEHAL 446 (496)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-TTCCCEEEEECEESSSCC---------CHHHHHTT--------------EEEECHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHh-cCCeEEEEECCcccCCccccCh---HHHHHHHhcC--------------CCCCCHHHHH
Confidence 67899999999999987665 5999999999998776432211 1111222111 1245779999
Q ss_pred HHHHHHHhhcCc
Q 011841 347 KGCVGALDTAGK 358 (476)
Q Consensus 347 ~a~~~~l~~~~~ 358 (476)
+++..++..+..
T Consensus 447 ~~l~~~l~~~~~ 458 (496)
T 3mje_A 447 GALDQMLENDDT 458 (496)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHcCCCc
Confidence 999999987654
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-17 Score=172.88 Aligned_cols=211 Identities=21% Similarity=0.161 Sum_probs=150.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEE-eCCCCCC---------CchHHHHHHhhh-cCCceEEEEeecCCHH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGL-DNFNSYY---------DPSLKRARQKLL-QKHQVFIVEGDLNDAP 183 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~-~R~~~~~---------~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~ 183 (476)
..+++||||||+|+||.++++.|+++|++ |+++ +|+.... .+.......... ....+.++.+|++|.+
T Consensus 249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~ 328 (525)
T 3qp9_A 249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE 328 (525)
T ss_dssp CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence 46789999999999999999999999998 5555 6764210 011111111111 2347999999999999
Q ss_pred HHHHhhccC----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC-----CCCeEEEecCccccC
Q 011841 184 LLTKLFDVV----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-----PQPSIVWASSSSVYG 250 (476)
Q Consensus 184 ~l~~~~~~~----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-----~~~~~V~~SS~~vyg 250 (476)
++.++++.+ ++|+||||||.... ..+.++.+..+++|+.|+.+|.+++.... . .+||++||++.+-
T Consensus 329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~-~~iV~~SS~a~~~ 407 (525)
T 3qp9_A 329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRP-PVLVLFSSVAAIW 407 (525)
T ss_dssp HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CC-CEEEEEEEGGGTT
T ss_pred HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCC-CEEEEECCHHHcC
Confidence 999999865 68999999998543 23445567789999999999999987665 4 3899999977543
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeC
Q 011841 251 LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 251 ~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 330 (476)
+. .....|+.+|...+.+.+++.. .|+++++|+||.+-++... +... ...+.+.
T Consensus 408 g~------------~g~~~YaaaKa~l~~lA~~~~~-~gi~v~sI~pG~~~tgm~~-~~~~---~~~~~~~--------- 461 (525)
T 3qp9_A 408 GG------------AGQGAYAAGTAFLDALAGQHRA-DGPTVTSVAWSPWEGSRVT-EGAT---GERLRRL--------- 461 (525)
T ss_dssp CC------------TTCHHHHHHHHHHHHHHTSCCS-SCCEEEEEEECCBTTSGGG-SSHH---HHHHHHT---------
T ss_pred CC------------CCCHHHHHHHHHHHHHHHHHHh-CCCCEEEEECCcccccccc-chhh---HHHHHhc---------
Confidence 22 4567899999999998877655 4999999999999333211 1111 1111111
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
+ ...+..+|+++++..++..+..
T Consensus 462 --g---~~~l~pee~a~~l~~~l~~~~~ 484 (525)
T 3qp9_A 462 --G---LRPLAPATALTALDTALGHGDT 484 (525)
T ss_dssp --T---BCCBCHHHHHHHHHHHHHHTCS
T ss_pred --C---CCCCCHHHHHHHHHHHHhCCCC
Confidence 1 1356789999999999988643
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-18 Score=173.92 Aligned_cols=177 Identities=15% Similarity=0.103 Sum_probs=129.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-------eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhh
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF 189 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-------~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 189 (476)
+.|+|+||||+||||++++..|+++|+ +|+++++... .........+. ....+.++ +|+.+.+.+.+++
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~--~~~~~g~~~dl-~~~~~~~~-~di~~~~~~~~a~ 78 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQA--MKALEGVVMEL-EDCAFPLL-AGLEATDDPKVAF 78 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHH-HTTTCTTE-EEEEEESCHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCc--hhhccchhhhh-hccccccc-CCeEeccChHHHh
Confidence 457999999999999999999999996 8999987421 00011111111 11122233 6777766778888
Q ss_pred ccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCcc-ccCCCCCCCCCCCCC-CCCC
Q 011841 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS-VYGLNTQVPFSESHR-TDQP 266 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~-vyg~~~~~~~~E~~~-~~~p 266 (476)
+++ |+|||+||..... ..++.++++.|+.++.+++++|++.+ ...+|+++|+.. +.. +..++.. ..+|
T Consensus 79 ~~~--D~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~-----~~~~~~~~~~~p 149 (327)
T 1y7t_A 79 KDA--DYALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA-----LIAYKNAPGLNP 149 (327)
T ss_dssp TTC--SEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-----HHHHHTCTTSCG
T ss_pred CCC--CEEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-----HHHHHHcCCCCh
Confidence 877 9999999985432 35678899999999999999999986 555788888753 111 1111111 2256
Q ss_pred CChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 267 ASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
...|+.+|+..|++...+++.+|++.+++|+++||||++.
T Consensus 150 ~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~ 189 (327)
T 1y7t_A 150 RNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS 189 (327)
T ss_dssp GGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred hheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC
Confidence 6789999999999999999999999999999999999753
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-17 Score=179.79 Aligned_cols=215 Identities=14% Similarity=0.006 Sum_probs=143.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC-----CCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY-----YDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~-----~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
.++|+||||||+|+||+++++.|+++|++|++++|.... ............... +.. +.+|++|.++++++++
T Consensus 17 l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~~D~~d~~~~~~~~~ 94 (613)
T 3oml_A 17 YDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKA-GGE-AVADYNSVIDGAKVIE 94 (613)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHT-TCC-EEECCCCGGGHHHHHC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHh-CCe-EEEEeCCHHHHHHHHH
Confidence 678999999999999999999999999999999883211 111111222221111 222 3489999998888887
Q ss_pred cC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCC
Q 011841 191 VV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 191 ~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
.+ ++|+||||||.... ..+.++.+..+++|+.|+.++++++ ++.+. ++||++||.+.+-..
T Consensus 95 ~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~-g~IV~isS~a~~~~~----- 168 (613)
T 3oml_A 95 TAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNY-GRIIMTSSNSGIYGN----- 168 (613)
T ss_dssp ----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCHHHHHCC-----
T ss_pred HHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CEEEEECCHHHcCCC-----
Confidence 54 68999999998543 3345667789999999999999987 44444 399999997654221
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
.+...|+.+|.+.+.+++.++.++ ||++++|+||.+- +...... ..
T Consensus 169 -------~~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t-~~~~~~~-----------------------~~ 217 (613)
T 3oml_A 169 -------FGQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAAS-RMTEGIL-----------------------PD 217 (613)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-------CCCC-----------------------CH
T ss_pred -------CCChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCC-hhhhhcc-----------------------ch
Confidence 356789999999999999988775 8999999998642 1111000 01
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
.....+.++|+|.+++.++......+| +++++.++
T Consensus 218 ~~~~~~~pedvA~~v~~L~s~~~~~tG-----------~~i~vdGG 252 (613)
T 3oml_A 218 ILFNELKPKLIAPVVAYLCHESCEDNG-----------SYIESAAG 252 (613)
T ss_dssp HHHTTCCGGGTHHHHHHTTSTTCCCCS-----------CEEEEETT
T ss_pred hhhhcCCHHHHHHHHHHhcCCCcCCCc-----------eEEEECCC
Confidence 112235779999999988876533333 77777654
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=4e-17 Score=161.71 Aligned_cols=230 Identities=16% Similarity=0.042 Sum_probs=147.9
Q ss_pred CCCCEEEEECC--CChhhHHHHHHHHHCCCeEEEEeCCCCC-------CCchHHHHHHhhhcCC---ceEEEEeec----
Q 011841 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFNSY-------YDPSLKRARQKLLQKH---QVFIVEGDL---- 179 (476)
Q Consensus 116 ~~~~~VLVtGa--tG~IG~~l~~~L~~~G~~V~~~~R~~~~-------~~~~~~~~~~~~~~~~---~v~~~~~Dl---- 179 (476)
.++|++||||| +|+||+++++.|+++|++|++++|+... ........ ....... .+.++.+|+
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~ 85 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDED-RKLPDGSLIEFAGVYPLDAAFDK 85 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHH-HBCTTSCBCCCSCEEECCTTCSS
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhh-hhhhccccccccccccccccccc
Confidence 46789999999 8999999999999999999999873200 00000001 1110110 124444443
Q ss_pred --------CC--------HHHHHHhhccC-----CccEEEEccccCC------hhhhhcChHHHHHHHHHHHHHHHHHHH
Q 011841 180 --------ND--------APLLTKLFDVV-----PFTHVLHLAAQAG------VRYAMQNPQSYVASNIAGFVNLLEVCK 232 (476)
Q Consensus 180 --------~d--------~~~l~~~~~~~-----~~d~Vi~~Ag~~~------~~~~~~~~~~~~~~nv~gt~~ll~~a~ 232 (476)
+| +++++++++.+ ++|+||||||... .....++.+..+++|+.++..+++++.
T Consensus 86 ~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 165 (315)
T 2o2s_A 86 PEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFG 165 (315)
T ss_dssp TTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHS
T ss_pred cchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence 32 44566665532 6799999999642 123345567889999999999999986
Q ss_pred hcCC-CCeEEEecCccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEEEEeeCcccCCCCC
Q 011841 233 SVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 233 ~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~G~~~~ 306 (476)
..-. .++||++||.+.+... ... ..|+.+|.+.+.+++.++.+ +|+++++|+||.|..+...
T Consensus 166 ~~m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~v~PG~v~T~~~~ 233 (315)
T 2o2s_A 166 PIMNEGGSAVTLSYLAAERVV------------PGYGGGMSSAKAALESDTRTLAWEAGQKYGVRVNAISAGPLKSRAAS 233 (315)
T ss_dssp TTEEEEEEEEEEEEGGGTSCC------------TTCCTTHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCCHHHH
T ss_pred HHHhcCCEEEEEecccccccC------------CCccHHHHHHHHHHHHHHHHHHHHhCcccCeEEEEEecccccchhhh
Confidence 4311 1389999998765321 222 47999999999999888765 4899999999999765210
Q ss_pred ------CCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcC
Q 011841 307 ------PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGN 379 (476)
Q Consensus 307 ------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~ 379 (476)
...+...+...+....++ ..+..++|+|++++.++.... ..+| +++.+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~p~------------~r~~~pedvA~~v~~L~s~~~~~itG-----------~~i~vdG 290 (315)
T 2o2s_A 234 AIGKSGEKSFIDYAIDYSYNNAPL------------RRDLHSDDVGGAALFLLSPLARAVSG-----------VTLYVDN 290 (315)
T ss_dssp HTTCSSSSCHHHHHHHHHHHHSSS------------CCCCCHHHHHHHHHHHTSGGGTTCCS-----------CEEEEST
T ss_pred hccccccchhHHHHHHHHhccCCC------------CCCCCHHHHHHHHHHHhCchhccCcC-----------CEEEECC
Confidence 001111121111111111 125678999999999886533 2233 8888888
Q ss_pred CC
Q 011841 380 TS 381 (476)
Q Consensus 380 ~~ 381 (476)
+.
T Consensus 291 G~ 292 (315)
T 2o2s_A 291 GL 292 (315)
T ss_dssp TG
T ss_pred Ce
Confidence 74
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-17 Score=160.98 Aligned_cols=236 Identities=15% Similarity=0.033 Sum_probs=131.3
Q ss_pred CCCCEEEEECC--CChhhHHHHHHHHHCCCeEEEEeCCC-----------CCCCchHH-------HHHHhhhcCC----c
Q 011841 116 PNGMTVLVTGA--AGFVGSHCSLALKKRGDGVLGLDNFN-----------SYYDPSLK-------RARQKLLQKH----Q 171 (476)
Q Consensus 116 ~~~~~VLVtGa--tG~IG~~l~~~L~~~G~~V~~~~R~~-----------~~~~~~~~-------~~~~~~~~~~----~ 171 (476)
.++|++||||| +|+||+++++.|+++|++|++++|+. +..+.... ....+..... .
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVF 86 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------CC
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccccc
Confidence 46789999999 89999999999999999999998631 11110000 0000000000 1
Q ss_pred eEEEEeec------------CC--------HHHHHHhhccC-----CccEEEEccccCC------hhhhhcChHHHHHHH
Q 011841 172 VFIVEGDL------------ND--------APLLTKLFDVV-----PFTHVLHLAAQAG------VRYAMQNPQSYVASN 220 (476)
Q Consensus 172 v~~~~~Dl------------~d--------~~~l~~~~~~~-----~~d~Vi~~Ag~~~------~~~~~~~~~~~~~~n 220 (476)
+.++.+|+ +| .++++++++.+ ++|+||||||... ...+.++.+..+++|
T Consensus 87 ~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN 166 (319)
T 2ptg_A 87 DKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSS 166 (319)
T ss_dssp SEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHH
T ss_pred cccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHh
Confidence 34444442 22 33566655532 6799999999642 123445567889999
Q ss_pred HHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCCCCCC-ChHHHHHHHHHHHHHHHHHH----hCCcEEE
Q 011841 221 IAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPA-SLYAATKKAGEEIAHTYNHI----YGLALTG 294 (476)
Q Consensus 221 v~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~-~~Y~~sK~~~E~~~~~~~~~----~gi~~~i 294 (476)
+.++.++++++...-. ..+||++||...+... ... ..|+.+|.+.+.+++.++.+ +|+++++
T Consensus 167 ~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~l~~~la~el~~~~gIrvn~ 234 (319)
T 2ptg_A 167 SYSFVSLLQHFLPLMKEGGSALALSYIASEKVI------------PGYGGGMSSAKAALESDCRTLAFEAGRARAVRVNC 234 (319)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEEEEECC------------------------------THHHHHHHHHHHHHHHCCEEEE
T ss_pred hHHHHHHHHHHHHHHhcCceEEEEecccccccc------------CccchhhHHHHHHHHHHHHHHHHHhccccCeeEEE
Confidence 9999999999865411 1389999998754321 223 47999999999999888765 5899999
Q ss_pred EeeCcccCCCCCCCCc--HHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCC
Q 011841 295 LRFFTVYGPWGRPDMA--YFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQ 371 (476)
Q Consensus 295 lRp~~v~G~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~ 371 (476)
|+||.|..+....... ...+.....+ .. ........+..++|+|++++.++.... ..+|
T Consensus 235 v~PG~v~T~~~~~~~~~~~~~~~~~~~~-----~~---~~~~p~~r~~~peevA~~v~~L~s~~~~~itG---------- 296 (319)
T 2ptg_A 235 ISAGPLKSRAASAIGKAGDKTFIDLAID-----YS---EANAPLQKELESDDVGRAALFLLSPLARAVTG---------- 296 (319)
T ss_dssp EEECCCC---------------------------------------CCCHHHHHHHHHHHTSGGGTTCCS----------
T ss_pred EeeCCccChhhhhcccccchhhHHHHHH-----HH---hccCCCCCCCCHHHHHHHHHHHhCcccCCccC----------
Confidence 9999998864221000 0000000000 00 000112246789999999999887533 2333
Q ss_pred ceEEEEcCCCc
Q 011841 372 LRVYNLGNTSP 382 (476)
Q Consensus 372 ~~i~ni~~~~~ 382 (476)
+++.+.++..
T Consensus 297 -~~i~vdGG~~ 306 (319)
T 2ptg_A 297 -ATLYVDNGLH 306 (319)
T ss_dssp -CEEEESTTCT
T ss_pred -CEEEECCCce
Confidence 8899988753
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=165.98 Aligned_cols=175 Identities=11% Similarity=-0.007 Sum_probs=124.3
Q ss_pred CCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCC---------CCCCchHHHHHHhhhcCCceEEEEeecCCH--H
Q 011841 117 NGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFN---------SYYDPSLKRARQKLLQKHQVFIVEGDLNDA--P 183 (476)
Q Consensus 117 ~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~---------~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~--~ 183 (476)
++|+||||||++ +||.+++++|+++|++|++.+|.. +..................+.++.+|+++. +
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 368999999875 999999999999999999887632 000000000000001122478899999887 6
Q ss_pred ------------------HHHHhhccC-----CccEEEEccccCC---h---hhhhcChHHHHHHHHHHHHHHHHHHHhc
Q 011841 184 ------------------LLTKLFDVV-----PFTHVLHLAAQAG---V---RYAMQNPQSYVASNIAGFVNLLEVCKSV 234 (476)
Q Consensus 184 ------------------~l~~~~~~~-----~~d~Vi~~Ag~~~---~---~~~~~~~~~~~~~nv~gt~~ll~~a~~~ 234 (476)
++.++++.+ ++|++|||||... . ..+.++.+..+++|+.++..+++++...
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777766543 6899999999631 1 2344556789999999999999987543
Q ss_pred CC-CCeEEEecCccccCCCCCCCCCCCCCCCCCCC-hHHHHHHHHHHHHHHHHHH----hCCcEEEEeeCcccCC
Q 011841 235 NP-QPSIVWASSSSVYGLNTQVPFSESHRTDQPAS-LYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYGP 303 (476)
Q Consensus 235 ~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~-~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~G~ 303 (476)
-. ..+||++||...+... .... .|+.+|.+.+.+.+.++.+ +|+++++|.||.|..+
T Consensus 161 m~~~g~Iv~isS~~~~~~~------------~~~~~~Y~asKaal~~~~~~la~el~~~~gI~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 161 MKPQSSIISLTYHASQKVV------------PGYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSR 223 (329)
T ss_dssp EEEEEEEEEEECGGGTSCC------------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCH
T ss_pred HhhCCeEEEEeCccccCCC------------CcchHHHHHHHHHHHHHHHHHHHHhCCccCeEEEEEecceeech
Confidence 21 1389999998754321 2333 7999999999998887755 4899999999999765
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.9e-15 Score=159.04 Aligned_cols=233 Identities=15% Similarity=0.103 Sum_probs=153.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC-----CCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY-----YDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~-----~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
.++|+++||||+++||+++++.|+++|++|++.+|.... ..+.......+.... +... .+|+.|.++++++++
T Consensus 6 l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~-g~~~-~~d~~d~~~~~~~v~ 83 (604)
T 2et6_A 6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKN-GGVA-VADYNNVLDGDKIVE 83 (604)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHT-TCEE-EEECCCTTCHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhc-CCeE-EEEcCCHHHHHHHHH
Confidence 467899999999999999999999999999999875411 011122222222111 2222 357777765555543
Q ss_pred cC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCC
Q 011841 191 VV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 191 ~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
.+ ++|++|||||.... ..+.++.+..+++|+.|+..+.+++. +.+. .+||++||.+..-+.
T Consensus 84 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~-G~IVnisS~ag~~~~----- 157 (604)
T 2et6_A 84 TAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKY-GRIVNTSSPAGLYGN----- 157 (604)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECCHHHcCCC-----
Confidence 22 67999999997432 33455677899999999998888753 3443 399999997643211
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
.....|+.+|.+.+.+.+.++.++ ||++++|.|+ +..+ +..... + .
T Consensus 158 -------~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg-~~T~----------m~~~~~---~----------~ 206 (604)
T 2et6_A 158 -------FGQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL-ARSR----------MTESIM---P----------P 206 (604)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-CCCH----------HHHTTS---C----------H
T ss_pred -------CCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC-CcCc----------cccccC---C----------h
Confidence 345689999999999999988764 8999999996 2211 111100 0 0
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCC------------------CcccHHHHHHHHHHHh
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNT------------------SPVPVGRLVSILENLL 396 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~------------------~~vt~~el~~~l~~~~ 396 (476)
.......++|+|.+++.++......+| +++.+.++ ..++..++.+.+.++.
T Consensus 207 ~~~~~~~pe~vA~~v~~L~s~~~~itG-----------~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 275 (604)
T 2et6_A 207 PMLEKLGPEKVAPLVLYLSSAENELTG-----------QFFEVAAGFYAQIRWERSGGVLFKPDQSFTAEVVAKRFSEIL 275 (604)
T ss_dssp HHHTTCSHHHHHHHHHHHTSSSCCCCS-----------CEEEEETTEEEEEEEEECCCEECCSSTTCCHHHHHHHHHHHT
T ss_pred hhhccCCHHHHHHHHHHHhCCcccCCC-----------CEEEECCCeEEEEEEEeccceecCCCCCCCHHHHHHHHHHhh
Confidence 001135789999999998876533333 66665543 3467888988888775
Q ss_pred CC
Q 011841 397 NT 398 (476)
Q Consensus 397 g~ 398 (476)
..
T Consensus 276 ~~ 277 (604)
T 2et6_A 276 DY 277 (604)
T ss_dssp CC
T ss_pred ch
Confidence 43
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-15 Score=158.07 Aligned_cols=230 Identities=15% Similarity=0.092 Sum_probs=151.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeec-CCHHH-HHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL-NDAPL-LTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl-~d~~~-l~~~~~~~- 192 (476)
.++|+++||||+++||+++++.|+++|++|++.+|.. .++....... ....+..+.+|+ .+.+. ++++.+..
T Consensus 320 l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~---~g~~~~~~~~Dv~~~~~~~~~~~~~~~G 394 (604)
T 2et6_A 320 LKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKA---AGGEAWPDQHDVAKDSEAIIKNVIDKYG 394 (604)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHH---TTCEEEEECCCHHHHHHHHHHHHHHHHS
T ss_pred cCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHh---cCCeEEEEEcChHHHHHHHHHHHHHhcC
Confidence 5678999999999999999999999999999998732 1111111111 123566677788 55433 23333321
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|++|||||.... +.+.++.+..+++|+.|+..+.+++. +.+. .+||++||.+.+-+.
T Consensus 395 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~IVnisS~ag~~~~------------ 461 (604)
T 2et6_A 395 TIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQF-GRIINITSTSGIYGN------------ 461 (604)
T ss_dssp CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCHHHHSCC------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEECChhhccCC------------
Confidence 57999999997432 33455677899999999998888763 3333 499999997643211
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
.....|+.+|.+...+.+.++.++ ||++++|.||. -.+... .. .... ......
T Consensus 462 ~~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG~-~T~m~~------~~----~~~~-------------~~~~~~ 517 (604)
T 2et6_A 462 FGQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPHA-ETAMTL------SI----MREQ-------------DKNLYH 517 (604)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECC-CCCC--------------------------------CCSSC
T ss_pred CCChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCCC-CCcccc------cc----Cchh-------------hccCCC
Confidence 345689999999999999888764 89999999983 222110 00 0000 012346
Q ss_pred HHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC-----------------cccHHHHHHHHHHHhCC
Q 011841 342 IDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS-----------------PVPVGRLVSILENLLNT 398 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~-----------------~vt~~el~~~l~~~~g~ 398 (476)
++|+|.+++.++......+| +++.+.++. .++..++.+.+.++...
T Consensus 518 pe~vA~~v~~L~s~~~~itG-----------~~~~vdGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 580 (604)
T 2et6_A 518 ADQVAPLLVYLGTDDVPVTG-----------ETFEIGGGWIGNTRWQRAKGAVSHDEHTTVEFIKEHLNEITDF 580 (604)
T ss_dssp GGGTHHHHHHTTSTTCCCCS-----------CEEEEETTEEEEEEEEECCCEECCSSSCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCccCCCC-----------cEEEECCCeeEeeeeeccccccCCCCCCCHHHHHHHHHHHhcc
Confidence 89999999887755433333 777776652 35566666666655543
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=146.69 Aligned_cols=178 Identities=12% Similarity=-0.059 Sum_probs=128.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHH-CCCeEEEEeCCCCCCCch--------HHHHHHh-hhcCCceEEEEeecCCHHHH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYYDPS--------LKRARQK-LLQKHQVFIVEGDLNDAPLL 185 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~-~G~~V~~~~R~~~~~~~~--------~~~~~~~-~~~~~~v~~~~~Dl~d~~~l 185 (476)
..+|++|||||++.||.++++.|++ +|++|++++|..+..... ....... ......+..+.+|++|++++
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v 124 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK 124 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 5789999999999999999999999 999999999876654321 0111111 11234688899999999998
Q ss_pred HHhhccC-----CccEEEEccccCC--------------------------------------hhhhhcChHHHHHHHHH
Q 011841 186 TKLFDVV-----PFTHVLHLAAQAG--------------------------------------VRYAMQNPQSYVASNIA 222 (476)
Q Consensus 186 ~~~~~~~-----~~d~Vi~~Ag~~~--------------------------------------~~~~~~~~~~~~~~nv~ 222 (476)
+++++.+ ++|++|||||... .+.+.++.+..+++|..
T Consensus 125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~ 204 (405)
T 3zu3_A 125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG 204 (405)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence 8887643 6899999998630 11234455667888877
Q ss_pred HHH-HHHHHHHhcCC---CCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEE
Q 011841 223 GFV-NLLEVCKSVNP---QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY----GLALTG 294 (476)
Q Consensus 223 gt~-~ll~~a~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~i 294 (476)
+.. .+++++..... ..++|++||++..-.. +......|+.+|.+.+.+.+.++.++ |+++++
T Consensus 205 ~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~----------p~~~~~aY~AaKaal~~ltrsLA~Ela~~~GIRVNa 274 (405)
T 3zu3_A 205 EDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITH----------DIYWNGSIGAAKKDLDQKVLAIRESLAAHGGGDARV 274 (405)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGT----------TTTTTSHHHHHHHHHHHHHHHHHHHHHTTTSCEEEE
T ss_pred hHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcC----------CCccchHHHHHHHHHHHHHHHHHHHhCcccCeEEEE
Confidence 765 55555432221 1389999997743211 10122789999999999999988763 899999
Q ss_pred EeeCcccCC
Q 011841 295 LRFFTVYGP 303 (476)
Q Consensus 295 lRp~~v~G~ 303 (476)
+.||.|-.+
T Consensus 275 VaPG~i~T~ 283 (405)
T 3zu3_A 275 SVLKAVVSQ 283 (405)
T ss_dssp EECCCCCCH
T ss_pred EEeCCCcCc
Confidence 999999876
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.6e-15 Score=150.46 Aligned_cols=218 Identities=10% Similarity=-0.066 Sum_probs=144.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHH-CCCeEEEEeCCCCCCCchH--------HHHHHh-hhcCCceEEEEeecCCHHHH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYYDPSL--------KRARQK-LLQKHQVFIVEGDLNDAPLL 185 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~-~G~~V~~~~R~~~~~~~~~--------~~~~~~-~~~~~~v~~~~~Dl~d~~~l 185 (476)
..+|++|||||+++||.++++.|++ +|++|++++|..+...... ...... ......+..+.+|++|++++
T Consensus 59 ~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v 138 (422)
T 3s8m_A 59 DGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR 138 (422)
T ss_dssp SSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 3578999999999999999999999 9999999999876654321 101011 11234688899999999988
Q ss_pred HHhhcc------CCccEEEEccccC-------------C--h-----------------------hhhhcChHHHHHHHH
Q 011841 186 TKLFDV------VPFTHVLHLAAQA-------------G--V-----------------------RYAMQNPQSYVASNI 221 (476)
Q Consensus 186 ~~~~~~------~~~d~Vi~~Ag~~-------------~--~-----------------------~~~~~~~~~~~~~nv 221 (476)
+++++. -++|++|||||.. . + +.+.++.+..+++|.
T Consensus 139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~ 218 (422)
T 3s8m_A 139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG 218 (422)
T ss_dssp HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence 877653 2679999999862 0 0 123334455676776
Q ss_pred HHHH-HHHHHHHhcCC---CCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEE
Q 011841 222 AGFV-NLLEVCKSVNP---QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTG 294 (476)
Q Consensus 222 ~gt~-~ll~~a~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~i 294 (476)
.+.. .+++++..... ..++|++||++..-.. +......|+.+|.+.+.+.+.++.++ |+++++
T Consensus 219 ~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~----------p~~~~~aY~ASKaAl~~lTrsLA~Ela~~GIRVNa 288 (422)
T 3s8m_A 219 GQDWELWIDALEGAGVLADGARSVAFSYIGTEITW----------PIYWHGALGKAKVDLDRTAQRLNARLAKHGGGANV 288 (422)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGH----------HHHTSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred hhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccC----------CCccchHHHHHHHHHHHHHHHHHHHhCccCEEEEE
Confidence 6654 55665543221 1379999997643211 00122679999999999999988774 899999
Q ss_pred EeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC
Q 011841 295 LRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 295 lRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
|.||.|-.+....-...+.....+. +++... | -.+||++++..++....
T Consensus 289 VaPG~i~T~~~~~ip~~~~~~~~~~--~~m~r~-----G-------~pEdva~~v~~L~sd~l 337 (422)
T 3s8m_A 289 AVLKSVVTQASAAIPVMPLYISMVY--KIMKEK-----G-------LHEGTIEQLDRLFRERL 337 (422)
T ss_dssp EEECCCCCTTGGGSTHHHHHHHHHH--HHHHHT-----T-------CCCCHHHHHHHHHHHTT
T ss_pred EEcCCCcChhhhcCCCChHHHHHHH--hhhcCC-----c-------ChHHHHHHHHHHhcchh
Confidence 9999998875432111221111111 122111 1 13899999999887754
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=168.37 Aligned_cols=210 Identities=14% Similarity=0.083 Sum_probs=143.4
Q ss_pred CCCCEEEEECCCCh-hhHHHHHHHHHCCCeEEEEe-CCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhcc-
Q 011841 116 PNGMTVLVTGAAGF-VGSHCSLALKKRGDGVLGLD-NFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDV- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~-IG~~l~~~L~~~G~~V~~~~-R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~- 191 (476)
..+++||||||+|+ ||.++++.|+++|++|++++ |+.+............... ...+.++.+|++|.++++++++.
T Consensus 673 l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~i 752 (1887)
T 2uv8_A 673 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI 752 (1887)
T ss_dssp CTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHHH
Confidence 57899999999998 99999999999999999985 5332211111111111111 34688999999999998887752
Q ss_pred --------C--CccEEEEccccCChh--h---h--hcChHHHHHHHHHHHHHHHHHHHhcCC-----CCeEEEecCcccc
Q 011841 192 --------V--PFTHVLHLAAQAGVR--Y---A--MQNPQSYVASNIAGFVNLLEVCKSVNP-----QPSIVWASSSSVY 249 (476)
Q Consensus 192 --------~--~~d~Vi~~Ag~~~~~--~---~--~~~~~~~~~~nv~gt~~ll~~a~~~~~-----~~~~V~~SS~~vy 249 (476)
. ++|+||||||..... . . .++.+..+++|+.++..++++++.... ..+||++||...+
T Consensus 753 ~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag~ 832 (1887)
T 2uv8_A 753 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT 832 (1887)
T ss_dssp HSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTTC
T ss_pred HHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHhc
Confidence 1 489999999975322 1 1 345678999999999999998743221 1389999997653
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHHHhC--CcEEEEeeCcccC-CCCCCCCcHHHHHHHHHcCCceE
Q 011841 250 GLNTQVPFSESHRTDQPASLYAATKKAGEEI-AHTYNHIYG--LALTGLRFFTVYG-PWGRPDMAYFFFTKDILQGKTID 325 (476)
Q Consensus 250 g~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~-~~~~~~~~g--i~~~ilRp~~v~G-~~~~~~~~~~~~~~~~~~g~~~~ 325 (476)
.+ ....|+.+|.+.+.+ .+.++.+++ |++++|+||+|.| +.......... .....++
T Consensus 833 ~g--------------g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG~V~tT~m~~~~~~~~~----~~~~~pl- 893 (1887)
T 2uv8_A 833 FG--------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNIIAE----GIEKMGV- 893 (1887)
T ss_dssp SS--------------CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEECCEECC-----CCTTHH----HHHTTSC-
T ss_pred cC--------------CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEecccccccccccchhHHH----HHHhcCC-
Confidence 21 235799999999998 666665543 9999999999985 32111111111 1111111
Q ss_pred EEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 326 VYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
.+..++|+|++++.++...
T Consensus 894 ------------r~~sPEEVA~avlfLaSd~ 912 (1887)
T 2uv8_A 894 ------------RTFSQKEMAFNLLGLLTPE 912 (1887)
T ss_dssp ------------CCEEHHHHHHHHHGGGSHH
T ss_pred ------------CCCCHHHHHHHHHHHhCCC
Confidence 2347899999999888664
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-14 Score=163.54 Aligned_cols=210 Identities=14% Similarity=0.075 Sum_probs=142.5
Q ss_pred CCCCEEEEECCCCh-hhHHHHHHHHHCCCeEEEEeCCCC-CCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhcc-
Q 011841 116 PNGMTVLVTGAAGF-VGSHCSLALKKRGDGVLGLDNFNS-YYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDV- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~-IG~~l~~~L~~~G~~V~~~~R~~~-~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~- 191 (476)
..+++||||||+|+ ||.++++.|+++|++|+++++... ...+........... ...+.++.+|++|.++++++++.
T Consensus 650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~i 729 (1878)
T 2uv9_A 650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNYI 729 (1878)
T ss_dssp CTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 56799999999999 999999999999999999964332 111111111122111 34688999999999999888753
Q ss_pred ------C--CccEEEEccccCChh-----hh--hcChHHHHHHHHHHHHHHHHHHHhcC-----CCCeEEEecCccccCC
Q 011841 192 ------V--PFTHVLHLAAQAGVR-----YA--MQNPQSYVASNIAGFVNLLEVCKSVN-----PQPSIVWASSSSVYGL 251 (476)
Q Consensus 192 ------~--~~d~Vi~~Ag~~~~~-----~~--~~~~~~~~~~nv~gt~~ll~~a~~~~-----~~~~~V~~SS~~vyg~ 251 (476)
. ++|+||||||..... .. .++.+..+++|+.++..++++++... ...+||++||.+.+.+
T Consensus 730 ~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~g 809 (1878)
T 2uv9_A 730 YDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTFG 809 (1878)
T ss_dssp HCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSSS
T ss_pred HHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhccC
Confidence 2 589999999975332 11 34557899999999999887743211 1138999999764321
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-h--CCcEEEEeeCccc-CCCCCCCCcHHHHHHHHHcCCceEEE
Q 011841 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI-Y--GLALTGLRFFTVY-GPWGRPDMAYFFFTKDILQGKTIDVY 327 (476)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-~--gi~~~ilRp~~v~-G~~~~~~~~~~~~~~~~~~g~~~~~~ 327 (476)
....|+.+|.+.+.+++.+..+ + ++++++|+||++- ++.... ...........++
T Consensus 810 --------------g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V~gT~m~~~----~~~~~~~~~~~pl--- 868 (1878)
T 2uv9_A 810 --------------NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWTRGTGLMSA----NNLVAEGVEKLGV--- 868 (1878)
T ss_dssp --------------CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCBCCTTSCSH----HHHTHHHHHTTTC---
T ss_pred --------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecceecCccccc----chhhHHHHHhcCC---
Confidence 2357999999999988765543 2 3999999999997 442211 1111122222111
Q ss_pred eeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 328 KTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
.+..++|+|++++.++...
T Consensus 869 ----------r~~sPeEVA~avlfLaSd~ 887 (1878)
T 2uv9_A 869 ----------RTFSQQEMAFNLLGLMAPA 887 (1878)
T ss_dssp ----------CCBCHHHHHHHHHHHHSHH
T ss_pred ----------CCCCHHHHHHHHHHHhCCc
Confidence 2347899999999888654
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-14 Score=159.73 Aligned_cols=211 Identities=19% Similarity=0.127 Sum_probs=149.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHH-HCCCe-EEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALK-KRGDG-VLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~-~~G~~-V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
..++++|||||+|.||..+++.|+ ++|++ |++++|+....+...+ ...+. .....+.++.+|++|.++++++++.+
T Consensus 528 ~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~-~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~ 606 (795)
T 3slk_A 528 DAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAE-LVAQLTAYGAEVSLQACDVADRETLAKVLASI 606 (795)
T ss_dssp CTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHH-HHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred ccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHH-HHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence 567899999999999999999999 78984 9999997433322222 11221 12447899999999999999988765
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|+||||||.... ..+.++.+..+++|+.|+.++.+++... . +||++||++.+-+.
T Consensus 607 ~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~-l--~iV~~SS~ag~~g~------------ 671 (795)
T 3slk_A 607 PDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD-V--ALVLFSSVSGVLGS------------ 671 (795)
T ss_dssp CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT-S--EEEEEEETHHHHTC------------
T ss_pred HHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC-C--EEEEEccHHhcCCC------------
Confidence 68999999998542 3344566788999999999999988332 2 89999998754322
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHH
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (476)
..+..|+.+|...+.+.+++.. .|++++.|.||.+-+++.... ........+.+.. ...+..++
T Consensus 672 ~g~~~YaAaka~~~alA~~~~~-~Gi~v~sI~pG~v~t~g~~~~-~~~~~~~~~~~~g--------------~~~l~~~e 735 (795)
T 3slk_A 672 GGQGNYAAANSFLDALAQQRQS-RGLPTRSLAWGPWAEHGMAST-LREAEQDRLARSG--------------LLPISTEE 735 (795)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCCSCCCHHHH-HHHHHHHHHHHTT--------------BCCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-cCCeEEEEECCeECcchhhcc-ccHHHHHHHHhcC--------------CCCCCHHH
Confidence 4567899999988888887765 499999999999875531100 0001111111111 12356688
Q ss_pred HHHHHHHHHhhcCc
Q 011841 345 VVKGCVGALDTAGK 358 (476)
Q Consensus 345 va~a~~~~l~~~~~ 358 (476)
+...+..++..+..
T Consensus 736 ~~~~~~~~l~~~~~ 749 (795)
T 3slk_A 736 GLSQFDAACGGAHT 749 (795)
T ss_dssp HHHHHHHHHTSSCS
T ss_pred HHHHHHHHHhCCCc
Confidence 88888888876554
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=140.80 Aligned_cols=178 Identities=11% Similarity=-0.082 Sum_probs=125.1
Q ss_pred CCCCEEEEECCCChhhHH--HHHHHHHCCCeEEEEeCCCCCCCch--------HHHHHHh-hhcCCceEEEEeecCCHHH
Q 011841 116 PNGMTVLVTGAAGFVGSH--CSLALKKRGDGVLGLDNFNSYYDPS--------LKRARQK-LLQKHQVFIVEGDLNDAPL 184 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~--l~~~L~~~G~~V~~~~R~~~~~~~~--------~~~~~~~-~~~~~~v~~~~~Dl~d~~~ 184 (476)
..+|+||||||+++||.+ +++.|+++|++|++++|........ ....... ......+..+.+|++|.++
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~ 137 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET 137 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence 678999999999999999 9999999999999999977654321 1111111 1123468899999999999
Q ss_pred HHHhhccC-----CccEEEEccccC-------------Ch-------------------------hhhhcChHHHHHHHH
Q 011841 185 LTKLFDVV-----PFTHVLHLAAQA-------------GV-------------------------RYAMQNPQSYVASNI 221 (476)
Q Consensus 185 l~~~~~~~-----~~d~Vi~~Ag~~-------------~~-------------------------~~~~~~~~~~~~~nv 221 (476)
++++++.+ ++|++|||||.. .. +...++.+..+++|.
T Consensus 138 v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~ 217 (418)
T 4eue_A 138 KDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMG 217 (418)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhh
Confidence 88877643 689999999863 00 112333445666666
Q ss_pred HHHH-HHHHHHHhcCC---CCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEE
Q 011841 222 AGFV-NLLEVCKSVNP---QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI----YGLALT 293 (476)
Q Consensus 222 ~gt~-~ll~~a~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ 293 (476)
.+.. .+++++...+. ..++|++||++..-.. +......|+.+|.+.+.+.+.++.+ +|++++
T Consensus 218 ~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~----------p~~~~~aY~ASKaAL~~ltrsLA~ELa~~~GIrVN 287 (418)
T 4eue_A 218 GEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTY----------KIYREGTIGIAKKDLEDKAKLINEKLNRVIGGRAF 287 (418)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGT----------TTTTTSHHHHHHHHHHHHHHHHHHHHHHHHSCEEE
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCC----------CccccHHHHHHHHHHHHHHHHHHHHhCCccCeEEE
Confidence 5554 45555443322 1379999997643211 1122378999999999998888755 589999
Q ss_pred EEeeCcccCC
Q 011841 294 GLRFFTVYGP 303 (476)
Q Consensus 294 ilRp~~v~G~ 303 (476)
+|.||.|-.+
T Consensus 288 ~V~PG~v~T~ 297 (418)
T 4eue_A 288 VSVNKALVTK 297 (418)
T ss_dssp EEECCCCCCH
T ss_pred EEECCcCcCh
Confidence 9999999876
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-14 Score=161.66 Aligned_cols=210 Identities=14% Similarity=0.093 Sum_probs=141.5
Q ss_pred CCCCEEEEECCCCh-hhHHHHHHHHHCCCeEEEE-eCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhcc-
Q 011841 116 PNGMTVLVTGAAGF-VGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDV- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~-IG~~l~~~L~~~G~~V~~~-~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~- 191 (476)
.++|+||||||+|+ ||.++++.|+++|++|+++ .|+.+...+.......... ....+.++.+|++|.++++++++.
T Consensus 474 L~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I 553 (1688)
T 2pff_A 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI 553 (1688)
T ss_dssp CCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence 56789999999998 9999999999999999998 4554443332222211111 123688999999999998887752
Q ss_pred --------C--CccEEEEccccCChh-----hh--hcChHHHHHHHHHHHHHHHHHHHh--cC---CCCeEEEecCcccc
Q 011841 192 --------V--PFTHVLHLAAQAGVR-----YA--MQNPQSYVASNIAGFVNLLEVCKS--VN---PQPSIVWASSSSVY 249 (476)
Q Consensus 192 --------~--~~d~Vi~~Ag~~~~~-----~~--~~~~~~~~~~nv~gt~~ll~~a~~--~~---~~~~~V~~SS~~vy 249 (476)
. ++|+||||||..... .. .++.+..+++|+.++..++++++. .- ...+||++||.+.+
T Consensus 554 ~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~ 633 (1688)
T 2pff_A 554 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT 633 (1688)
T ss_dssp HSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTT
T ss_pred HHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhc
Confidence 1 489999999974322 11 345578899999999999988732 11 11389999997643
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHH-HHHHHHHhC--CcEEEEeeCcccCCC-CCCCCcHHHHHHHHHcCCceE
Q 011841 250 GLNTQVPFSESHRTDQPASLYAATKKAGEEI-AHTYNHIYG--LALTGLRFFTVYGPW-GRPDMAYFFFTKDILQGKTID 325 (476)
Q Consensus 250 g~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~-~~~~~~~~g--i~~~ilRp~~v~G~~-~~~~~~~~~~~~~~~~g~~~~ 325 (476)
.+ ....|+.+|.+.+.+ .+.++.+++ +++++|+||+|.|.. ...... ........
T Consensus 634 ~G--------------g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaPG~V~TT~M~~~~e~----~~~~l~~i--- 692 (1688)
T 2pff_A 634 FG--------------GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIGWTRGTGLMSANNI----IAEGIEKM--- 692 (1688)
T ss_dssp SS--------------CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCCCCCCCCSSSCTTTT----CSTTTSSS---
T ss_pred cC--------------CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEECcCcCCcccCCchH----HHHHHHhC---
Confidence 21 235799999999998 444444333 889999999998532 111000 00001110
Q ss_pred EEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 326 VYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
+ ..+..++|+|++++.++...
T Consensus 693 -------p---lR~~sPEEVA~aIlFLaSd~ 713 (1688)
T 2pff_A 693 -------G---VRTFSQKEMAFNLLGLLTPE 713 (1688)
T ss_dssp -------S---CCCCCCCTTHHHHHHHTSTT
T ss_pred -------C---CCCCCHHHHHHHHHHHhCCC
Confidence 1 12346799999999888654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.5e-12 Score=151.67 Aligned_cols=174 Identities=20% Similarity=0.125 Sum_probs=123.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..++++|||||+|.||..+++.|+++|++ |++++|+....+........-.....++.++.+|++|.++++++++.+
T Consensus 1882 ~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~ 1961 (2512)
T 2vz8_A 1882 PPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQ 1961 (2512)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 36789999999999999999999999997 778888765432211111111112346888999999999998887643
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
++|+||||||.... +.+.++.+..+++|+.|+.++.+++.... ...+||++||++..-+. .
T Consensus 1962 ~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~------------~ 2029 (2512)
T 2vz8_A 1962 LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGN------------A 2029 (2512)
T ss_dssp HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTC------------T
T ss_pred cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCC------------C
Confidence 68999999997432 33456677889999999999988876532 12489999997754222 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccC
Q 011841 266 PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYG 302 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G 302 (476)
....|+.+|...+.+++..+.+ |++...+-.|.+-+
T Consensus 2030 g~~~Y~aaKaal~~l~~~rr~~-Gl~~~a~~~g~~~~ 2065 (2512)
T 2vz8_A 2030 GQANYGFANSAMERICEKRRHD-GLPGLAVQWGAIGD 2065 (2512)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHT-TSCCCEEEECCBCT
T ss_pred CcHHHHHHHHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence 4578999999999999976665 89999998877543
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-10 Score=141.34 Aligned_cols=240 Identities=13% Similarity=0.079 Sum_probs=148.1
Q ss_pred CCCCEEEEECCCCh-hhHHHHHHHHHCCCeEEEEeCCCCCCCc-hHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGF-VGSHCSLALKKRGDGVLGLDNFNSYYDP-SLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~-IG~~l~~~L~~~G~~V~~~~R~~~~~~~-~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.++|++|||||+++ ||.++++.|+++|++|++++|+.+.... ........... ...+..+.+|++|.++++++++.+
T Consensus 2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i 2213 (3089)
T 3zen_D 2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWV 2213 (3089)
T ss_dssp CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHH
Confidence 68899999999999 9999999999999999999986542100 01222222221 235788999999999988875421
Q ss_pred ---------CccEEEEccccCC---------hhhhhcChH----HHHHHHHHHHHHHHHHHHh----cCCCC--eEEEec
Q 011841 193 ---------PFTHVLHLAAQAG---------VRYAMQNPQ----SYVASNIAGFVNLLEVCKS----VNPQP--SIVWAS 244 (476)
Q Consensus 193 ---------~~d~Vi~~Ag~~~---------~~~~~~~~~----~~~~~nv~gt~~ll~~a~~----~~~~~--~~V~~S 244 (476)
++|++|||||... .....++.+ ..+++|+.++..+++.+.. .+... .+|...
T Consensus 2214 ~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~~ 2293 (3089)
T 3zen_D 2214 GTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLPG 2293 (3089)
T ss_dssp TSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred HhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEC
Confidence 5799999999711 111223333 3488899998888776543 33211 222222
Q ss_pred CccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH--h--CCcEEEEeeCcccCCCC-CCCCcHHHHHHHHH
Q 011841 245 SSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI--Y--GLALTGLRFFTVYGPWG-RPDMAYFFFTKDIL 319 (476)
Q Consensus 245 S~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~--gi~~~ilRp~~v~G~~~-~~~~~~~~~~~~~~ 319 (476)
|. ..+.. .....|+.+|.+.+.+.+.++.+ + +++++.+.||+|-+... ....... ...
T Consensus 2294 ss-~~g~~------------g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v~PG~v~tT~l~~~~~~~~----~~~ 2356 (3089)
T 3zen_D 2294 SP-NRGMF------------GGDGAYGEAKSALDALENRWSAEKSWAERVSLAHALIGWTKGTGLMGQNDAIV----SAV 2356 (3089)
T ss_dssp CS-STTSC------------SSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEEECCCEECSTTTTTTTTTH----HHH
T ss_pred Cc-ccccC------------CCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEEeecccCCCcccccchhHH----HHH
Confidence 21 11110 12347999999999999999988 4 58899999999975421 1111111 111
Q ss_pred cCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCcC--CCCCCCCCCCCCceEEEEcCCC---cccHHHHHHHHHH
Q 011841 320 QGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKS--TGSGGKKRGPAQLRVYNLGNTS---PVPVGRLVSILEN 394 (476)
Q Consensus 320 ~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~--~g~~~~~~~~~~~~i~ni~~~~---~vt~~el~~~l~~ 394 (476)
...+ . .....+|+|.+++.++...... ++ +.-...++++- ...+.++.+.+.+
T Consensus 2357 ~~~~----------~---r~~~PeEIA~avlfLaS~~a~~~~~~---------~p~~vdl~GG~~~~~~~~~~~~~~~~~ 2414 (3089)
T 3zen_D 2357 EEAG----------V---TTYTTDEMAAMLLDLCTVETKVAAAG---------APVKVDLTGGLGDIKIDMAELAAKARE 2414 (3089)
T ss_dssp GGGS----------C---BCEEHHHHHHHHHHTTSHHHHHHHHH---------SCEEEECSBSCSSCCCCHHHHTHHHHH
T ss_pred HhcC----------C---CCCCHHHHHHHHHHHhChhhhhHhcC---------CeEEEEcCCCcCcCCCCHHHHHHHHHH
Confidence 1111 0 1227899999999877543211 10 00234444543 3578887776543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.7e-10 Score=93.35 Aligned_cols=94 Identities=19% Similarity=0.110 Sum_probs=74.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.+|+|+|+|+ |++|+.+++.|++.| ++|++++|+.+ ........++.++.+|+.|.+.+.+++++. |
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~---------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--d 71 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLA---------ALAVLNRMGVATKQVDAKDEAGLAKALGGF--D 71 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHH---------HHHHHHTTTCEEEECCTTCHHHHHHHTTTC--S
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHH---------HHHHHHhCCCcEEEecCCCHHHHHHHHcCC--C
Confidence 3579999999 999999999999999 99999998321 111122457889999999999999999866 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIV 241 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V 241 (476)
+|||+++.. ...++++.|.+.++. +|.
T Consensus 72 ~vi~~~~~~------------------~~~~~~~~~~~~g~~-~~~ 98 (118)
T 3ic5_A 72 AVISAAPFF------------------LTPIIAKAAKAAGAH-YFD 98 (118)
T ss_dssp EEEECSCGG------------------GHHHHHHHHHHTTCE-EEC
T ss_pred EEEECCCch------------------hhHHHHHHHHHhCCC-EEE
Confidence 999999641 135788899999874 443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-10 Score=112.64 Aligned_cols=177 Identities=13% Similarity=0.063 Sum_probs=116.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-------eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhh
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF 189 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-------~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~ 189 (476)
+.|+|+||||+|+||++++..|+.+|. +|+++++..+...+.......+.... ...+ ..|+...+++.+++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~-~~~~-~~~i~~~~~~~~al 81 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDC-AFPL-LAGMTAHADPMTAF 81 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTT-TCTT-EEEEEEESSHHHHT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhh-cccc-cCcEEEecCcHHHh
Confidence 457999999999999999999999885 79998874100000011111112111 0111 24555555677889
Q ss_pred ccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCcc-c--cCCCCCCCCCCCCCCCC
Q 011841 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSS-V--YGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~-v--yg~~~~~~~~E~~~~~~ 265 (476)
+++ |+|||+||.... ...+..+++..|+.++.++++.+.+.+ ...+||++|.-. + |-.. +..+..+
T Consensus 82 ~~a--D~Vi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~~------~~~~~~p 151 (329)
T 1b8p_A 82 KDA--DVALLVGARPRG--PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIAM------KSAPSLP 151 (329)
T ss_dssp TTC--SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHH------HTCTTSC
T ss_pred CCC--CEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHHH------HHcCCCC
Confidence 988 999999997332 234566789999999999999999985 666899998722 0 1000 0000012
Q ss_pred CCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCC
Q 011841 266 PASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG 305 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~ 305 (476)
+...|+.+++...++...+++..|++...++..+|+|.++
T Consensus 152 ~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg 191 (329)
T 1b8p_A 152 AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHS 191 (329)
T ss_dssp GGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSS
T ss_pred HHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEeccC
Confidence 2234677788888888888888898877788777888643
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.83 E-value=6.1e-08 Score=96.67 Aligned_cols=179 Identities=12% Similarity=0.005 Sum_probs=113.4
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHH-HCCCeEEEEeCCCCCCCchH-------HHH--HHhhhcCCceEEEEeecCCHHH
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALK-KRGDGVLGLDNFNSYYDPSL-------KRA--RQKLLQKHQVFIVEGDLNDAPL 184 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~-~~G~~V~~~~R~~~~~~~~~-------~~~--~~~~~~~~~v~~~~~Dl~d~~~ 184 (476)
...+|+||||||+.+||.+.+..|+ +.|..|+++.+..+..++.. ... ............+.+|+.|.+.
T Consensus 47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~ 126 (401)
T 4ggo_A 47 AKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI 126 (401)
T ss_dssp SCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence 3567999999999999999999998 67999999998776654321 111 1112234578899999999999
Q ss_pred HHHhhccC-----CccEEEEccccCChhh-------------------------h----------hcChHHHHH-HHHHH
Q 011841 185 LTKLFDVV-----PFTHVLHLAAQAGVRY-------------------------A----------MQNPQSYVA-SNIAG 223 (476)
Q Consensus 185 l~~~~~~~-----~~d~Vi~~Ag~~~~~~-------------------------~----------~~~~~~~~~-~nv~g 223 (476)
++++++.. ++|+|||++|...-.. . ....+++-. +.+.+
T Consensus 127 i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~vMg 206 (401)
T 4ggo_A 127 KAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKVMG 206 (401)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHHHh
Confidence 98888754 7899999999741100 0 001111111 11111
Q ss_pred HH---HHHHHHHhcCC---CCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-CCcEEEEe
Q 011841 224 FV---NLLEVCKSVNP---QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLR 296 (476)
Q Consensus 224 t~---~ll~~a~~~~~---~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-gi~~~ilR 296 (476)
.. ..+++....+. ..++|.+|+.+..- ..+......+|.+|.+.|..++.++.+. ++++.++.
T Consensus 207 ~s~~s~w~~al~~a~lla~G~siva~SYiGse~----------t~P~Y~~G~mG~AKaaLEa~~r~La~eL~~~~a~v~v 276 (401)
T 4ggo_A 207 GEDWERWIKQLSKEGLLEEGCITLAYSYIGPEA----------TQALYRKGTIGKAKEHLEATAHRLNKENPSIRAFVSV 276 (401)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGG----------GHHHHTTSHHHHHHHHHHHHHHHHHHHCTTEEEEEEE
T ss_pred hhHHHHHHHHHHhhhcccCCceEEEEeccCcce----------eecCCCccHHHHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 11 12233333332 12688888754210 0010123468999999999999999886 47777877
Q ss_pred eCcccCC
Q 011841 297 FFTVYGP 303 (476)
Q Consensus 297 p~~v~G~ 303 (476)
++.+...
T Consensus 277 ~~a~vT~ 283 (401)
T 4ggo_A 277 NKGLVTR 283 (401)
T ss_dssp CCCCCCT
T ss_pred cCccccc
Confidence 7777654
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.6e-08 Score=98.59 Aligned_cols=116 Identities=17% Similarity=0.145 Sum_probs=81.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcC-CceEEEEeecCCHHHHHHhhccCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQK-HQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~-~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
+.|+|+||||+|++|..++..|+.+| ++|+++++..+ .....+.... ....+ .+ +.+.+++.++++++
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~------~~~~~dL~~~~~~~~v-~~-~~~t~d~~~al~ga- 77 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA------PGVTADISHMDTGAVV-RG-FLGQQQLEAALTGM- 77 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH------HHHHHHHHTSCSSCEE-EE-EESHHHHHHHHTTC-
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc------HhHHHHhhcccccceE-EE-EeCCCCHHHHcCCC-
Confidence 45799999999999999999999998 89999987442 1111111111 11111 22 33456678888988
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+|||+||.... ......++...|+.++.++++.+.+.+.. .+|+++|
T Consensus 78 -DvVi~~ag~~~~--~g~~r~dl~~~N~~~~~~i~~~i~~~~p~-~~viv~S 125 (326)
T 1smk_A 78 -DLIIVPAGVPRK--PGMTRDDLFKINAGIVKTLCEGIAKCCPR-AIVNLIS 125 (326)
T ss_dssp -SEEEECCCCCCC--SSCCCSHHHHHHHHHHHHHHHHHHHHCTT-SEEEECC
T ss_pred -CEEEEcCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEEC
Confidence 999999996332 12334567899999999999999998876 6666666
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=9.7e-08 Score=81.96 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=73.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d 195 (476)
.+++|+|+|+ |.+|..+++.|.+.|++|++++|+.+ ..+.....+..++.+|..|.+.+.++ ++++ |
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~---------~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~--d 72 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEE---------KVNAYASYATHAVIANATEENELLSLGIRNF--E 72 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHH---------HHHTTTTTCSEEEECCTTCHHHHHTTTGGGC--S
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHhCCEEEEeCCCCHHHHHhcCCCCC--C
Confidence 4568999998 99999999999999999999998321 12222233567788999998888776 5655 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
+||++++.. .+.|. .+++.+++.+.. ++|..++..
T Consensus 73 ~vi~~~~~~------------~~~~~----~~~~~~~~~~~~-~ii~~~~~~ 107 (144)
T 2hmt_A 73 YVIVAIGAN------------IQAST----LTTLLLKELDIP-NIWVKAQNY 107 (144)
T ss_dssp EEEECCCSC------------HHHHH----HHHHHHHHTTCS-EEEEECCSH
T ss_pred EEEECCCCc------------hHHHH----HHHHHHHHcCCC-eEEEEeCCH
Confidence 999998741 01232 466677888875 777766544
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6.2e-08 Score=95.40 Aligned_cols=171 Identities=12% Similarity=0.112 Sum_probs=103.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeC--CCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhccC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDN--FNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R--~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
|+|+||||+|+||++++..|+.+|. ++.++++ ..+..... .....+. .....+.+...| +++.++++++
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~-~~dl~~~~~~~~~~~~i~~~~----d~l~~al~ga 75 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGL-REDIYDALAGTRSDANIYVES----DENLRIIDES 75 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHH-HHHHHHHHTTSCCCCEEEEEE----TTCGGGGTTC
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHH-HHHHHHhHHhcCCCeEEEeCC----cchHHHhCCC
Confidence 6899999999999999999999885 6777876 22100000 0001111 111233333322 2255678888
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHH
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (476)
|+|||+||.... ........+..|+.++.++++++++.+ . ++|+++|--+.-...- .... ...++...+|.
T Consensus 76 --D~Vi~~Ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~-~-~~vlv~SNPv~~~t~~-~~k~--~~~p~~rviG~ 146 (313)
T 1hye_A 76 --DVVIITSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEIC-D-TKIFVITNPVDVMTYK-ALVD--SKFERNQVFGL 146 (313)
T ss_dssp --SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHC-C-CEEEECSSSHHHHHHH-HHHH--HCCCTTSEEEC
T ss_pred --CEEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhC-C-eEEEEecCcHHHHHHH-HHHh--hCcChhcEEEe
Confidence 999999997332 223456789999999999999999998 6 5666655322100000 0000 01134455666
Q ss_pred -HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCC
Q 011841 273 -TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPW 304 (476)
Q Consensus 273 -sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~ 304 (476)
+.+...++...+++..|++..-++. .|+|..
T Consensus 147 gt~LD~~r~~~~la~~lgv~~~~v~~-~v~G~H 178 (313)
T 1hye_A 147 GTHLDSLRFKVAIAKFFGVHIDEVRT-RIIGEH 178 (313)
T ss_dssp TTHHHHHHHHHHHHHHHTCCGGGEEC-CEEECS
T ss_pred CccHHHHHHHHHHHHHhCcCHHHeEE-EEeecc
Confidence 6666777777777777876555654 667753
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2e-08 Score=97.66 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=64.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+++|+||||+|+||+++++.|+++|++|++++|..+.. ...........++.++.+|++|.+++.++++.+ |
T Consensus 117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~----~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--D 190 (287)
T 1lu9_A 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA----QAAADSVNKRFKVNVTAAETADDASRAEAVKGA--H 190 (287)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH----HHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTC--S
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHH----HHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhC--C
Confidence 4678999999999999999999999999999999954221 111111111125678889999999999999876 9
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+||||++.
T Consensus 191 vlVn~ag~ 198 (287)
T 1lu9_A 191 FVFTAGAI 198 (287)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999985
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=91.26 Aligned_cols=166 Identities=14% Similarity=0.071 Sum_probs=98.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeC--CCCCCCchHHHHHHhhhc----CCceEEEEeecCCHHHHHHhhc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDN--FNSYYDPSLKRARQKLLQ----KHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R--~~~~~~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
|+|+||||+|++|+.++..|+.+|. +++++++ ..+. .+....+... ...+.+.. + + .+.++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~----~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~ 69 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDD----TVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTA 69 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHH----HHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhh----HHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhC
Confidence 6899999999999999999999885 6888876 3211 1111111111 12344443 2 2 34577
Q ss_pred cCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChH
Q 011841 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLY 270 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y 270 (476)
++ |+|||+||.... ......+.+..|+.+++++++.+++.+.. .+|+++|--+--.. ....... ..++....
T Consensus 70 ~a--DvVi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~-~~viv~SNPv~~~~-~~~~~~~--~~p~~rvi 141 (303)
T 1o6z_A 70 GS--DVVVITAGIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDD-YISLTTSNPVDLLN-RHLYEAG--DRSREQVI 141 (303)
T ss_dssp TC--SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSC-CEEEECCSSHHHHH-HHHHHHS--SSCGGGEE
T ss_pred CC--CEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCC-cEEEEeCChHHHHH-HHHHHHc--CCCHHHee
Confidence 77 999999996332 22345678899999999999999999876 66666653220000 0000000 00222233
Q ss_pred HH-HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCC
Q 011841 271 AA-TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPW 304 (476)
Q Consensus 271 ~~-sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~ 304 (476)
|. +-+..-++...+++..|++..-+. ..|+|..
T Consensus 142 G~gt~Ld~~r~~~~la~~l~v~~~~v~-~~v~G~H 175 (303)
T 1o6z_A 142 GFGGRLDSARFRYVLSEEFDAPVQNVE-GTILGEH 175 (303)
T ss_dssp ECCHHHHHHHHHHHHHHHHTCCGGGEE-CCEEECS
T ss_pred ecccchhHHHHHHHHHHHhCcCHHHeE-EEEEeCC
Confidence 33 334444555555566677655566 7778853
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.3e-07 Score=78.09 Aligned_cols=98 Identities=20% Similarity=0.256 Sum_probs=69.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d 195 (476)
.+++|+|+|+ |.+|+.+++.|.++|++|++++++.+ ..+.....++.++.+|.+|++.++++ ++ ++|
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~---------~~~~~~~~~~~~~~gd~~~~~~l~~~~~~--~~d 72 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKE---------KIELLEDEGFDAVIADPTDESFYRSLDLE--GVS 72 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH---------HHHHHHHTTCEEEECCTTCHHHHHHSCCT--TCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHH---------HHHHHHHCCCcEEECCCCCHHHHHhCCcc--cCC
Confidence 3568999998 99999999999999999999998321 11112224788999999999988876 33 459
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
+||.+.+. .+.|+ .++..+++.+ ..++|...
T Consensus 73 ~vi~~~~~-------------~~~n~----~~~~~a~~~~-~~~iia~~ 103 (141)
T 3llv_A 73 AVLITGSD-------------DEFNL----KILKALRSVS-DVYAIVRV 103 (141)
T ss_dssp EEEECCSC-------------HHHHH----HHHHHHHHHC-CCCEEEEE
T ss_pred EEEEecCC-------------HHHHH----HHHHHHHHhC-CceEEEEE
Confidence 99988762 11233 4556677777 34666443
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.46 E-value=6.1e-07 Score=91.47 Aligned_cols=100 Identities=19% Similarity=0.153 Sum_probs=74.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC---eEEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhhccCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD---GVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~---~V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
++|+|+|| |+||+.+++.|++.|. +|++++|+.+.. ......... ..++..+.+|++|.+++++++++.+
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~----~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~ 76 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKC----QEIAQSIKAKGYGEIDITTVDADSIEELVALINEVK 76 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHH----HHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHH----HHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhC
Confidence 68999999 9999999999999983 899999854321 111111111 1368899999999999999999856
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~ 243 (476)
+|+|||+++... ...++++|.+.++ ++|-+
T Consensus 77 ~DvVin~ag~~~------------------~~~v~~a~l~~g~--~vvD~ 106 (405)
T 4ina_A 77 PQIVLNIALPYQ------------------DLTIMEACLRTGV--PYLDT 106 (405)
T ss_dssp CSEEEECSCGGG------------------HHHHHHHHHHHTC--CEEES
T ss_pred CCEEEECCCccc------------------ChHHHHHHHHhCC--CEEEe
Confidence 699999998511 1367788888886 45543
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-06 Score=72.82 Aligned_cols=99 Identities=16% Similarity=0.252 Sum_probs=68.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d 195 (476)
++|+|+|+|+ |.+|..+++.|.+.|++|++++|+.+ .. .......++.++.+|..+.+.+.+. ++++ |
T Consensus 3 ~~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~-------~~-~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~--d 71 (140)
T 1lss_A 3 HGMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKD-------IC-KKASAEIDALVINGDCTKIKTLEDAGIEDA--D 71 (140)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH-------HH-HHHHHHCSSEEEESCTTSHHHHHHTTTTTC--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH-------HH-HHHHHhcCcEEEEcCCCCHHHHHHcCcccC--C
Confidence 3589999997 99999999999999999999998321 11 1111122677888999998877654 5555 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
+||++.+.. ..| ..+.+.++..+.. ++|..+
T Consensus 72 ~vi~~~~~~-------------~~~----~~~~~~~~~~~~~-~ii~~~ 102 (140)
T 1lss_A 72 MYIAVTGKE-------------EVN----LMSSLLAKSYGIN-KTIARI 102 (140)
T ss_dssp EEEECCSCH-------------HHH----HHHHHHHHHTTCC-CEEEEC
T ss_pred EEEEeeCCc-------------hHH----HHHHHHHHHcCCC-EEEEEe
Confidence 999997530 122 2455667777765 777543
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2e-06 Score=88.78 Aligned_cols=107 Identities=18% Similarity=0.092 Sum_probs=74.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+++|+|+| +|++|+++++.|++.|++|++++|..+ +...-.....++..+.+|+.|.+++.++++++ |+
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~-------~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~--Dv 71 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLE-------SAKKLSAGVQHSTPISLDVNDDAALDAEVAKH--DL 71 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHH-------HHHHTTTTCTTEEEEECCTTCHHHHHHHHTTS--SE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHH-------HHHHHHHhcCCceEEEeecCCHHHHHHHHcCC--cE
Confidence 357899998 799999999999999999999998421 11111111225788899999999999999865 99
Q ss_pred EEEccccCChhhhhcChHHHHHH--H-------HHHHHHHHHHHHhcCC
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVAS--N-------IAGFVNLLEVCKSVNP 236 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~--n-------v~gt~~ll~~a~~~~~ 236 (476)
|||+++..... ......++. | ...+.+++++|+++|+
T Consensus 72 VIn~a~~~~~~---~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv 117 (450)
T 1ff9_A 72 VISLIPYTFHA---TVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI 117 (450)
T ss_dssp EEECCC--CHH---HHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTC
T ss_pred EEECCccccch---HHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCC
Confidence 99999863221 001112221 1 2357789999999986
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-06 Score=84.98 Aligned_cols=94 Identities=19% Similarity=0.101 Sum_probs=72.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
..|+|+|.|| |++|+.+++.|.+ .++|++.+|..+ +.. .. ...+..+..|+.|.+++.++++++ |+
T Consensus 15 ~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~-------~~~--~~-~~~~~~~~~d~~d~~~l~~~~~~~--Dv 80 (365)
T 3abi_A 15 RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNE-------NLE--KV-KEFATPLKVDASNFDKLVEVMKEF--EL 80 (365)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHH-------HHH--HH-TTTSEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHH-------HHH--HH-hccCCcEEEecCCHHHHHHHHhCC--CE
Confidence 5579999998 9999999998865 589999998332 111 11 235677889999999999999987 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
||++++... ...++++|.++|+ ++|=+|
T Consensus 81 Vi~~~p~~~------------------~~~v~~~~~~~g~--~yvD~s 108 (365)
T 3abi_A 81 VIGALPGFL------------------GFKSIKAAIKSKV--DMVDVS 108 (365)
T ss_dssp EEECCCGGG------------------HHHHHHHHHHHTC--EEEECC
T ss_pred EEEecCCcc------------------cchHHHHHHhcCc--ceEeee
Confidence 999987521 1368889999986 787665
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.5e-06 Score=79.47 Aligned_cols=76 Identities=17% Similarity=0.199 Sum_probs=54.2
Q ss_pred CCCEEEEECC----------------CChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC
Q 011841 117 NGMTVLVTGA----------------AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180 (476)
Q Consensus 117 ~~~~VLVtGa----------------tG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~ 180 (476)
.+|+|||||| +|.+|.+++++|+++|++|+++.|....... ...++.++ |+.
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~----------~~~~~~~~--~v~ 69 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE----------PHPNLSIR--EIT 69 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC----------CCTTEEEE--ECC
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc----------CCCCeEEE--EHh
Confidence 5789999999 9999999999999999999999996532110 01255554 454
Q ss_pred CHHH----HHHhhccCCccEEEEccccCCh
Q 011841 181 DAPL----LTKLFDVVPFTHVLHLAAQAGV 206 (476)
Q Consensus 181 d~~~----l~~~~~~~~~d~Vi~~Ag~~~~ 206 (476)
..++ +.+.+..+ |++||+||....
T Consensus 70 s~~em~~~v~~~~~~~--Dili~aAAvsD~ 97 (232)
T 2gk4_A 70 NTKDLLIEMQERVQDY--QVLIHSMAVSDY 97 (232)
T ss_dssp SHHHHHHHHHHHGGGC--SEEEECSBCCSE
T ss_pred HHHHHHHHHHHhcCCC--CEEEEcCccccc
Confidence 5443 33344444 999999998554
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=5.5e-06 Score=81.39 Aligned_cols=113 Identities=19% Similarity=0.116 Sum_probs=79.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcC--C-ceEEEEeecCCHHHHHHhhccCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQK--H-QVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~--~-~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
|+|.|+||+|++|..++..|+..| ++|+++++.. .+....+.... . .+.... ..++++++++++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~------~~~~a~dL~~~~~~~~l~~~~----~t~d~~~a~~~a- 69 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH------TPGVAADLSHIETRATVKGYL----GPEQLPDCLKGC- 69 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS------HHHHHHHHTTSSSSCEEEEEE----SGGGHHHHHTTC-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc------cHHHHHHHhccCcCceEEEec----CCCCHHHHhCCC-
Confidence 689999999999999999999988 7999999854 11111122111 1 122111 113467778888
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||+.||.... ......+.+..|+..+..+++.+.+.....+||++|-
T Consensus 70 -DvVvi~ag~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 70 -DVVVIPAGVPRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp -SEEEECCSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred -CEEEECCCcCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 999999987432 1233345688999999999999988876668888764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-05 Score=70.38 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=59.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHh-hccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKL-FDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~-~~~~~ 193 (476)
..+++|+|+|+ |.+|..+++.|.+.|++|++++|+.+.. .... ..++.++.+|..+.+.+.++ ++++
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~---------~~~~~~~g~~~~~~d~~~~~~l~~~~~~~a- 85 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAF---------HRLNSEFSGFTVVGDAAEFETLKECGMEKA- 85 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGG---------GGSCTTCCSEEEESCTTSHHHHHTTTGGGC-
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHH---------HHHHhcCCCcEEEecCCCHHHHHHcCcccC-
Confidence 45689999996 9999999999999999999999854321 1122 34677888999888877765 5655
Q ss_pred ccEEEEcccc
Q 011841 194 FTHVLHLAAQ 203 (476)
Q Consensus 194 ~d~Vi~~Ag~ 203 (476)
|+||.+.+.
T Consensus 86 -d~Vi~~~~~ 94 (155)
T 2g1u_A 86 -DMVFAFTND 94 (155)
T ss_dssp -SEEEECSSC
T ss_pred -CEEEEEeCC
Confidence 999998864
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=5.4e-06 Score=77.07 Aligned_cols=76 Identities=20% Similarity=0.137 Sum_probs=55.8
Q ss_pred CCCCEEEEECC----------------CChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeec
Q 011841 116 PNGMTVLVTGA----------------AGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179 (476)
Q Consensus 116 ~~~~~VLVtGa----------------tG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl 179 (476)
..+|+|||||| +|.||.+++++|+++|++|+++++... ... ..++. ..|+
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~~-----------~~g~~--~~dv 71 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LPT-----------PPFVK--RVDV 71 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CCC-----------CTTEE--EEEC
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-ccc-----------CCCCe--EEcc
Confidence 57899999999 799999999999999999999987542 110 12343 4688
Q ss_pred CCHHHHHHhh-ccC-CccEEEEccccCC
Q 011841 180 NDAPLLTKLF-DVV-PFTHVLHLAAQAG 205 (476)
Q Consensus 180 ~d~~~l~~~~-~~~-~~d~Vi~~Ag~~~ 205 (476)
.+.+++.+.+ +.. ++|++|||||...
T Consensus 72 ~~~~~~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 72 MTALEMEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp CSHHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred CcHHHHHHHHHHhcCCCCEEEECCcccC
Confidence 8876544332 211 4599999999854
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.7e-05 Score=69.14 Aligned_cols=78 Identities=23% Similarity=0.365 Sum_probs=59.0
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~ 196 (476)
.++|+|+|+ |.+|+++++.|.+.|++|++++++.. +...... .. ...++.++.+|.+|++.+.++ ++++ |+
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~---~~~~~~~-~~-~~~~~~~i~gd~~~~~~l~~a~i~~a--d~ 74 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPE---DDIKQLE-QR-LGDNADVIPGDSNDSSVLKKAGIDRC--RA 74 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCH---HHHHHHH-HH-HCTTCEEEESCTTSHHHHHHHTTTTC--SE
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCh---HHHHHHH-Hh-hcCCCeEEEcCCCCHHHHHHcChhhC--CE
Confidence 467999996 99999999999999999999998421 0011111 11 134789999999999999886 7766 99
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
||-+.+.
T Consensus 75 vi~~~~~ 81 (153)
T 1id1_A 75 ILALSDN 81 (153)
T ss_dssp EEECSSC
T ss_pred EEEecCC
Confidence 9988753
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-05 Score=71.93 Aligned_cols=98 Identities=22% Similarity=0.275 Sum_probs=69.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh--hccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL--FDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~--~~~~ 192 (476)
..+++|+|+|+ |.+|..+++.|.+. |++|++++++.+ + .......++.++.+|.+|.+.+.++ ++++
T Consensus 37 ~~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~-------~--~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~a 106 (183)
T 3c85_A 37 PGHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREE-------A--AQQHRSEGRNVISGDATDPDFWERILDTGHV 106 (183)
T ss_dssp CTTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHH-------H--HHHHHHTTCCEEECCTTCHHHHHTBCSCCCC
T ss_pred CCCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHH-------H--HHHHHHCCCCEEEcCCCCHHHHHhccCCCCC
Confidence 34678999995 99999999999999 999999998331 1 1112234778889999999888877 6655
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVW 242 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~ 242 (476)
|+||.+.+. ......++..+++.+...++|.
T Consensus 107 --d~vi~~~~~-----------------~~~~~~~~~~~~~~~~~~~ii~ 137 (183)
T 3c85_A 107 --KLVLLAMPH-----------------HQGNQTALEQLQRRNYKGQIAA 137 (183)
T ss_dssp --CEEEECCSS-----------------HHHHHHHHHHHHHTTCCSEEEE
T ss_pred --CEEEEeCCC-----------------hHHHHHHHHHHHHHCCCCEEEE
Confidence 999987753 1112345566777764435554
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.1e-05 Score=83.44 Aligned_cols=77 Identities=22% Similarity=0.185 Sum_probs=59.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..+++|+|+|+ |++|+.+++.|++. |++|++++|..+ +.. ......++..+.+|+.|.+++.++++++
T Consensus 21 l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~-------ka~-~la~~~~~~~~~~D~~d~~~l~~~l~~~-- 89 (467)
T 2axq_A 21 HMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLA-------NAQ-ALAKPSGSKAISLDVTDDSALDKVLADN-- 89 (467)
T ss_dssp --CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHH-------HHH-HHHGGGTCEEEECCTTCHHHHHHHHHTS--
T ss_pred CCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHH-------HHH-HHHHhcCCcEEEEecCCHHHHHHHHcCC--
Confidence 35679999998 99999999999998 789999999432 111 1111135778889999999999988866
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+|||+++.
T Consensus 90 DvVIn~tp~ 98 (467)
T 2axq_A 90 DVVISLIPY 98 (467)
T ss_dssp SEEEECSCG
T ss_pred CEEEECCch
Confidence 999999986
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2.1e-06 Score=84.91 Aligned_cols=172 Identities=12% Similarity=0.096 Sum_probs=101.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC--e-----EEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHh
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD--G-----VLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKL 188 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~--~-----V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~ 188 (476)
.++|+||||+|+||++++..|+..|. + ++++|+... ....+....+... .+-+. ++...+...+.
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~--~~~~~g~a~DL~~~~~~~~~----~~~~~~~~~~~ 76 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM--MGVLDGVLMELQDCALPLLK----DVIATDKEEIA 76 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHHTCCTTEE----EEEEESCHHHH
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCc--cccchhhHhhhHhhhhcccC----CEEEcCCcHHH
Confidence 47899999999999999999998875 5 899987321 0011111122211 11121 22112235566
Q ss_pred hccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCcc---ccCCCCCCCCCCCCCCC
Q 011841 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP-SIVWASSSS---VYGLNTQVPFSESHRTD 264 (476)
Q Consensus 189 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~-~~V~~SS~~---vyg~~~~~~~~E~~~~~ 264 (476)
++++ |+||+.||... ....+..+.++.|+..++.+++.+++.+... +++.+|.-. +|-... ....
T Consensus 77 ~~da--DvVvitAg~pr--kpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~~~------~~~~- 145 (333)
T 5mdh_A 77 FKDL--DVAILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTASK------SAPS- 145 (333)
T ss_dssp TTTC--SEEEECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHH------TCTT-
T ss_pred hCCC--CEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHHHH------HcCC-
Confidence 8888 99999998632 2234556788999999999999999988754 577777521 110000 0000
Q ss_pred CCCChH-HHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 265 QPASLY-AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 265 ~p~~~Y-~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
.|..-. +.+-+..-++-..+++..|++..-++--.|+|..++
T Consensus 146 ~p~~~ig~~t~LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd 188 (333)
T 5mdh_A 146 IPKENFSCLTRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS 188 (333)
T ss_dssp SCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST
T ss_pred CCcCEEEEEEhHHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC
Confidence 111111 223444455555556666776666664446786544
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=6.5e-06 Score=74.87 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=65.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh---hccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL---FDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~---~~~~ 192 (476)
..+++|||+||+|.||..+++.+...|++|++++|+.+ .... ....+... ..|..+.+..+.+ ..+.
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~----~~~~-----~~~~g~~~-~~d~~~~~~~~~~~~~~~~~ 106 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA----KREM-----LSRLGVEY-VGDSRSVDFADEILELTDGY 106 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH----HHHH-----HHTTCCSE-EEETTCSTHHHHHHHHTTTC
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH----HHHH-----HHHcCCCE-EeeCCcHHHHHHHHHHhCCC
Confidence 35789999999999999999999999999999998422 1111 11113222 2477665444433 3333
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
++|+||+++|. . .....++.++..| ++|.+++..
T Consensus 107 ~~D~vi~~~g~--~----------------~~~~~~~~l~~~G---~~v~~g~~~ 140 (198)
T 1pqw_A 107 GVDVVLNSLAG--E----------------AIQRGVQILAPGG---RFIELGKKD 140 (198)
T ss_dssp CEEEEEECCCT--H----------------HHHHHHHTEEEEE---EEEECSCGG
T ss_pred CCeEEEECCch--H----------------HHHHHHHHhccCC---EEEEEcCCC
Confidence 57999999973 0 0234445454443 899888754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.4e-05 Score=65.44 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=57.9
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~ 196 (476)
.++|+|.|+ |.+|..+++.|.+.|++|++++++.+ ..+.....++.++.+|.++++.+.++ ++++ |+
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~---------~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~a--d~ 74 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRT---------RVDELRERGVRAVLGNAANEEIMQLAHLECA--KW 74 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH---------HHHHHHHTTCEEEESCTTSHHHHHHTTGGGC--SE
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHH---------HHHHHHHcCCCEEECCCCCHHHHHhcCcccC--CE
Confidence 457999997 99999999999999999999998432 11122234888999999999988875 4555 99
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
||-+.+.
T Consensus 75 vi~~~~~ 81 (140)
T 3fwz_A 75 LILTIPN 81 (140)
T ss_dssp EEECCSC
T ss_pred EEEECCC
Confidence 9987753
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.8e-05 Score=75.36 Aligned_cols=115 Identities=13% Similarity=0.115 Sum_probs=76.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhc----CCceEEEEeecCCHHHHHHhh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQ----KHQVFIVEGDLNDAPLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~ 189 (476)
+.+++|.|+|++|+||..++..|+.+| .+|+++|++.+. .+....+... ..++.+ ..++.+.+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k----~~g~a~DL~~~~~~~~~i~~-------t~d~~~al 74 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVG----LEGVAEEIRHCGFEGLNLTF-------TSDIKEAL 74 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHH----HHHHHHHHHHHCCTTCCCEE-------ESCHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchh----HHHHHHhhhhCcCCCCceEE-------cCCHHHHh
Confidence 456899999999999999999999998 589999974321 1111111111 112221 12355667
Q ss_pred ccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCe-EEEecC
Q 011841 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS-IVWASS 245 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~-~V~~SS 245 (476)
+++ |+||.+||.. +.......+.+..|+.....+++.+.+.+.... ++.+|.
T Consensus 75 ~dA--DvVvitaG~p--~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 75 TDA--KYIVSSGGAP--RKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp TTE--EEEEECCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred CCC--CEEEEccCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 777 9999999862 222344567889999999999999998887643 566654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.87 E-value=7.6e-05 Score=68.95 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=57.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~V 197 (476)
|+|+|+|+ |.+|+++++.|.++|++|++++++.+ .. .......++.++.+|.+|.+.+.++ ++++ |+|
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~-------~~-~~l~~~~~~~~i~gd~~~~~~l~~a~i~~a--d~v 69 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRE-------LC-EEFAKKLKATIIHGDGSHKEILRDAEVSKN--DVV 69 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHH-------HH-HHHHHHSSSEEEESCTTSHHHHHHHTCCTT--CEE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH-------HH-HHHHHHcCCeEEEcCCCCHHHHHhcCcccC--CEE
Confidence 67999997 99999999999999999999998322 11 1111223788999999999988876 5655 999
Q ss_pred EEcccc
Q 011841 198 LHLAAQ 203 (476)
Q Consensus 198 i~~Ag~ 203 (476)
|-+.+.
T Consensus 70 i~~~~~ 75 (218)
T 3l4b_C 70 VILTPR 75 (218)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 977653
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00021 Score=70.25 Aligned_cols=118 Identities=17% Similarity=0.090 Sum_probs=78.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
...++|.|+|+ |.+|..++..|+..|. +|+++++..+..............- ..++.+...| . +.++++
T Consensus 3 ~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~----~a~~~a 74 (326)
T 3pqe_A 3 KHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y----EDCKDA 74 (326)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G----GGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H----HHhCCC
Confidence 34679999996 9999999999999986 8999998332111000001111011 1245554433 1 356777
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||..||... .......+.+..|+.....+++.+.+......++.+|.
T Consensus 75 --DvVvi~ag~p~--kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 75 --DIVCICAGANQ--KPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp --SEEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred --CEEEEecccCC--CCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 99999998632 12234567889999999999999988877656776664
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00012 Score=68.44 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=68.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d 195 (476)
..++|+|+|+ |.+|+.+++.|.+.|+ |++++++.+ .. +... .++.++.+|.+|++.++++ ++++ |
T Consensus 8 ~~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~-------~~--~~~~-~~~~~i~gd~~~~~~l~~a~i~~a--d 73 (234)
T 2aef_A 8 KSRHVVICGW-SESTLECLRELRGSEV-FVLAEDENV-------RK--KVLR-SGANFVHGDPTRVSDLEKANVRGA--R 73 (234)
T ss_dssp --CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGG-------HH--HHHH-TTCEEEESCTTCHHHHHHTTCTTC--S
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHH-------HH--HHHh-cCCeEEEcCCCCHHHHHhcCcchh--c
Confidence 3468999997 9999999999999999 999987432 11 1111 4789999999999999877 7766 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~ 243 (476)
.||.+.+. .+.|+ .++..|++.+...++|.-
T Consensus 74 ~vi~~~~~-------------d~~n~----~~~~~a~~~~~~~~iia~ 104 (234)
T 2aef_A 74 AVIVDLES-------------DSETI----HCILGIRKIDESVRIIAE 104 (234)
T ss_dssp EEEECCSC-------------HHHHH----HHHHHHHHHCSSSEEEEE
T ss_pred EEEEcCCC-------------cHHHH----HHHHHHHHHCCCCeEEEE
Confidence 99987643 02233 455667777764355543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.60 E-value=8.2e-05 Score=73.86 Aligned_cols=77 Identities=25% Similarity=0.160 Sum_probs=53.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH----HHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL----LTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~----l~~~~~~ 191 (476)
..+++|||+||+|.||..+++.+...|++|++++|+.+. .... .. + +.. ...|+.+.++ +.++..+
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~----~~~~-~~-~---g~~-~~~d~~~~~~~~~~~~~~~~~ 237 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGK----EELF-RS-I---GGE-VFIDFTKEKDIVGAVLKATDG 237 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTH----HHHH-HH-T---TCC-EEEETTTCSCHHHHHHHHHTS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHH----HHHH-HH-c---CCc-eEEecCccHhHHHHHHHHhCC
Confidence 467899999999999999999999999999999985431 1111 11 1 222 2247764333 3333344
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
++|+||+++|.
T Consensus 238 -~~D~vi~~~g~ 248 (347)
T 2hcy_A 238 -GAHGVINVSVS 248 (347)
T ss_dssp -CEEEEEECSSC
T ss_pred -CCCEEEECCCc
Confidence 67999999984
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00016 Score=70.99 Aligned_cols=114 Identities=16% Similarity=0.109 Sum_probs=67.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhc----CCceEEEEeecCCHHHHHHhh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ----KHQVFIVEGDLNDAPLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~ 189 (476)
..+++|.|+|+ |.+|..++..|+..|. +|+++++..+ ..+....+... ...+.+...| .+.+
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~----k~~g~a~DL~~~~~~~~~~~i~~~~-------~~a~ 74 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKD----KTKGDAIDLEDALPFTSPKKIYSAE-------YSDA 74 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHH----HHHHHHHHHHTTGGGSCCCEEEECC-------GGGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChH----HHHHHHhhHhhhhhhcCCcEEEECc-------HHHh
Confidence 45689999997 9999999999999886 8999998322 11111111111 1244444332 2357
Q ss_pred ccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
+++ |+||..||... .......+.++.|+.-...+.+.+.+......++.+|.
T Consensus 75 ~~a--DiVvi~ag~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 75 KDA--DLVVITAGAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp TTC--SEEEECCCCC------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred cCC--CEEEECCCCCC--CCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 777 99999998632 12234456788899999999999988877656776664
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00023 Score=72.44 Aligned_cols=100 Identities=21% Similarity=0.239 Sum_probs=72.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d 195 (476)
.+++|+|+|+ |-+|+.+++.|.+.|++|++++++.+ ..+.....++.++.+|.++++.++++ ++.+ |
T Consensus 3 ~~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~---------~v~~~~~~g~~vi~GDat~~~~L~~agi~~A--~ 70 (413)
T 3l9w_A 3 HGMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPD---------HIETLRKFGMKVFYGDATRMDLLESAGAAKA--E 70 (413)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHH---------HHHHHHHTTCCCEESCTTCHHHHHHTTTTTC--S
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH---------HHHHHHhCCCeEEEcCCCCHHHHHhcCCCcc--C
Confidence 3467999997 99999999999999999999998432 11122234788999999999999887 6655 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
+||-+.+. -.....++..+++.+...++|--..
T Consensus 71 ~viv~~~~-----------------~~~n~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 71 VLINAIDD-----------------PQTNLQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp EEEECCSS-----------------HHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred EEEECCCC-----------------hHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 99987643 1223456677777776545554443
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00021 Score=70.15 Aligned_cols=77 Identities=18% Similarity=0.111 Sum_probs=53.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh---hccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL---FDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~---~~~~ 192 (476)
..+++|||+||+|.||..+++.+...|++|++++|+.+ ..... .. + +.. ...|..+.+..+++ ..+.
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~----~~~~~-~~-~---g~~-~~~~~~~~~~~~~~~~~~~~~ 208 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ----KAQSA-LK-A---GAW-QVINYREEDLVERLKEITGGK 208 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH----HHHHH-HH-H---TCS-EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHH-HH-c---CCC-EEEECCCccHHHHHHHHhCCC
Confidence 46789999999999999999999999999999998432 11111 11 1 221 22466665444433 3334
Q ss_pred CccEEEEccc
Q 011841 193 PFTHVLHLAA 202 (476)
Q Consensus 193 ~~d~Vi~~Ag 202 (476)
++|+||+++|
T Consensus 209 ~~D~vi~~~g 218 (327)
T 1qor_A 209 KVRVVYDSVG 218 (327)
T ss_dssp CEEEEEECSC
T ss_pred CceEEEECCc
Confidence 6799999998
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00027 Score=69.92 Aligned_cols=100 Identities=19% Similarity=0.122 Sum_probs=65.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~ 192 (476)
..+++|||+||+|.||..+++.+...|++|++++|+.+ ..... .. + +... ..|..+.+ .+.++..+.
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~----~~~~~-~~-~---ga~~-~~d~~~~~~~~~~~~~~~~~ 234 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSED----KLRRA-KA-L---GADE-TVNYTHPDWPKEVRRLTGGK 234 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHH----HHHHH-HH-H---TCSE-EEETTSTTHHHHHHHHTTTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH----HHHHH-Hh-c---CCCE-EEcCCcccHHHHHHHHhCCC
Confidence 46789999999999999999999999999999998432 11111 11 1 2222 24766543 344444444
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCc
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS 246 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~ 246 (476)
++|+||+++|. .. ....++.++..| ++|.+++.
T Consensus 235 ~~d~vi~~~g~-~~-----------------~~~~~~~l~~~G---~~v~~g~~ 267 (343)
T 2eih_A 235 GADKVVDHTGA-LY-----------------FEGVIKATANGG---RIAIAGAS 267 (343)
T ss_dssp CEEEEEESSCS-SS-----------------HHHHHHHEEEEE---EEEESSCC
T ss_pred CceEEEECCCH-HH-----------------HHHHHHhhccCC---EEEEEecC
Confidence 67999999983 11 234455555544 78887654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00016 Score=71.25 Aligned_cols=77 Identities=22% Similarity=0.205 Sum_probs=52.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHH----HHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLL----TKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l----~~~~~~ 191 (476)
..+++|||+||+|.||..+++.+...|++|++++|+.+ ..... ... +.. ...|..+.+++ .++..
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~----~~~~~-~~~----g~~-~~~d~~~~~~~~~~~~~~~~- 212 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE----KIAYL-KQI----GFD-AAFNYKTVNSLEEALKKASP- 212 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHH----HHHHH-HHT----TCS-EEEETTSCSCHHHHHHHHCT-
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHH----HHHHH-Hhc----CCc-EEEecCCHHHHHHHHHHHhC-
Confidence 46789999999999999999999999999999998432 11111 111 222 23477662333 33322
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
-++|+||+++|.
T Consensus 213 ~~~d~vi~~~g~ 224 (333)
T 1v3u_A 213 DGYDCYFDNVGG 224 (333)
T ss_dssp TCEEEEEESSCH
T ss_pred CCCeEEEECCCh
Confidence 257999999984
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00056 Score=68.53 Aligned_cols=76 Identities=16% Similarity=0.086 Sum_probs=56.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+++|+|+|+ |.||..+++.|...|++|++++|+.+ ...... ... +.. +.+|..+.+++.++++++ |
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~----~~~~~~-~~~---g~~-~~~~~~~~~~l~~~~~~~--D 231 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHK----RLQYLD-DVF---GGR-VITLTATEANIKKSVQHA--D 231 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHH-HHT---TTS-EEEEECCHHHHHHHHHHC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHH----HHHHHH-Hhc---Cce-EEEecCCHHHHHHHHhCC--C
Confidence 45689999999 99999999999999999999998432 111111 111 111 456888888899988877 9
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+||++++.
T Consensus 232 vVi~~~g~ 239 (369)
T 2eez_A 232 LLIGAVLV 239 (369)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99999985
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00087 Score=65.81 Aligned_cols=119 Identities=10% Similarity=0.051 Sum_probs=76.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
++.++|.|+|| |.+|..++..|+..|+ +|++.++..+..+.......... .......+... .|. +.++++
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t--~d~----~a~~~a- 76 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGA--NDY----AAIEGA- 76 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE--SSG----GGGTTC-
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEe--CCH----HHHCCC-
Confidence 45679999998 9999999999999998 99999986653221111111111 11112233211 122 467777
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||..+|...- ......+.+..|+.-...+++.+.+......++.+|.
T Consensus 77 -DiVIiaag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 77 -DVVIVTAGVPRK--PGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp -SEEEECCSCCCC-------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred -CEEEEccCcCCC--CCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 999999986321 1123445788899999999999988876656776664
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00055 Score=64.67 Aligned_cols=109 Identities=19% Similarity=0.150 Sum_probs=68.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHHhhhc--CC--ceEEEEe
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQKLLQ--KH--QVFIVEG 177 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~~~~~--~~--~v~~~~~ 177 (476)
.+++|+|.|+ |.+|.++++.|+..|. +|++++++.-.. -..+.....+.+. .+ .++.+..
T Consensus 30 ~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~ 108 (249)
T 1jw9_B 30 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 108 (249)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence 4579999996 9999999999999997 788888865110 0011111111111 12 3445555
Q ss_pred ecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccc
Q 011841 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSV 248 (476)
Q Consensus 178 Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~v 248 (476)
++. .+.+.++++++ |+||.+... ...-..+.++|++.++. +|+.+....
T Consensus 109 ~~~-~~~~~~~~~~~--DvVi~~~d~-----------------~~~~~~l~~~~~~~~~p--~i~~~~~g~ 157 (249)
T 1jw9_B 109 LLD-DAELAALIAEH--DLVLDCTDN-----------------VAVRNQLNAGCFAAKVP--LVSGAAIRM 157 (249)
T ss_dssp CCC-HHHHHHHHHTS--SEEEECCSS-----------------HHHHHHHHHHHHHHTCC--EEEEEEEBT
T ss_pred cCC-HhHHHHHHhCC--CEEEEeCCC-----------------HHHHHHHHHHHHHcCCC--EEEeeeccc
Confidence 565 35667778766 999998642 12224566778888764 776654433
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00089 Score=64.83 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=77.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+|.|+|+ |.+|..++..|+..|+ +|++.++..+..+........... -.....+... +| .+.++++ |
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~~a~~~a--D 71 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--AD----YSLLKGS--E 71 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SC----GGGGTTC--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CC----HHHhCCC--C
Confidence 68999999 9999999999999998 899999854321100000111110 0112333322 12 3467777 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
+||..+|... .......+.+..|+.-.+.+++.+.+.+....|+.+|.
T Consensus 72 iVViaag~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 72 IIVVTAGLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp EEEECCCCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred EEEECCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 9999998732 12234567889999999999999998877657777764
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00081 Score=65.72 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=59.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..+++|||+|+ |.+|+.++..|++.|. +|++++|..+..++ ............++.+...++.+.+.+.+.+..+
T Consensus 152 l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~-a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~a-- 227 (315)
T 3tnl_A 152 IIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYAN-AEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAES-- 227 (315)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHH-HHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTC--
T ss_pred ccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHH-HHHHHHHhhhhcCCceEEeccchHHHHHhhhcCC--
Confidence 57899999997 8999999999999998 89999996321111 1111112222224455566788877788888776
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+|||+...
T Consensus 228 DiIINaTp~ 236 (315)
T 3tnl_A 228 VIFTNATGV 236 (315)
T ss_dssp SEEEECSST
T ss_pred CEEEECccC
Confidence 999998754
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0017 Score=63.44 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=75.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHh-hhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQK-LLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+|.|+|+ |.+|..++..|+..|. +|+++++..+............ ......+.+...| + .+.++++ |
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~----~~a~~~a--D 71 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D----YGPTEDS--D 71 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S----SGGGTTC--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C----HHHhCCC--C
Confidence 68999997 9999999999999886 8999998664321111111111 1111234443222 2 2467777 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
+||..||... ....+..+.+..|+.-...+.+.+.+......++.+|.
T Consensus 72 vVii~ag~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 72 VCIITAGLPR--SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp EEEECCCC---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred EEEECCCCCC--CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 9999998732 22234567889999999999999998876656776664
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0016 Score=63.81 Aligned_cols=116 Identities=15% Similarity=0.097 Sum_probs=72.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
+.++|.|+|+ |++|..++..|+..|. +|+++|++.+..+...........-...+.+.. .+ .+.++++
T Consensus 6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~---~~----~~a~~~a-- 75 (318)
T 1y6j_A 6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA---GD----YSDVKDC-- 75 (318)
T ss_dssp -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C----GGGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE---CC----HHHhCCC--
Confidence 3578999998 9999999999999987 999999976544421111111000011333332 12 2357777
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|+||..++... .......+.+..|+.....+++.+.+......+|.+|
T Consensus 76 DvVii~~g~p~--k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 76 DVIVVTAGANR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp SEEEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred CEEEEcCCCCC--CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 99999998632 1122345678889999999999988876554566543
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0018 Score=63.49 Aligned_cols=117 Identities=14% Similarity=0.066 Sum_probs=77.4
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
..|+|.|+|+ |.+|..++..|+..|. +|+++++..+..... .....+. .......+... .|. +.++++
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~-a~dL~~~~~~~~~~~~v~~t--~d~----~a~~~a- 74 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGK-ALDLLQTCPIEGVDFKVRGT--NDY----KDLENS- 74 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHH-HHHHHTTHHHHTCCCCEEEE--SCG----GGGTTC-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHH-HHHHHhhhhhcCCCcEEEEc--CCH----HHHCCC-
Confidence 4579999996 9999999999999988 999999865432111 1111111 01112333321 122 467777
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||..+|...- ......+.+..|+.....+++.+.+......++.+|-
T Consensus 75 -DvVIi~ag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 75 -DVVIVTAGVPRK--PGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp -SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred -CEEEEcCCcCCC--CCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 999999986321 2234567788999999999999988876556776653
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0015 Score=64.29 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=77.9
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhc----CCceEEEEeecCCHHHHHH
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ----KHQVFIVEGDLNDAPLLTK 187 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~ 187 (476)
.....++|.|+|+ |.+|..++..|+.+|. +|+++++..+ ..+....+... .....++.. .|.+
T Consensus 15 ~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~----~~~g~a~DL~~~~~~~~~~~i~~~--~d~~---- 83 (331)
T 4aj2_A 15 EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIED----KLKGEMMDLQHGSLFLKTPKIVSS--KDYS---- 83 (331)
T ss_dssp --CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHH----HHHHHHHHHHHTGGGCSCCEEEEC--SSGG----
T ss_pred ccCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChH----HHHHHHHhhhhhhhccCCCeEEEc--CCHH----
Confidence 3456789999998 9999999999999986 8999998422 11111111111 112222222 2322
Q ss_pred hhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 188 ~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
.++++ |+||..||... .......+.++.|+.-...+.+.+.+......++.+|.
T Consensus 84 ~~~~a--DiVvi~aG~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 84 VTANS--KLVIITAGARQ--QEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp GGTTE--EEEEECCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred HhCCC--CEEEEccCCCC--CCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 46777 99999998732 22345567889999999999999988876657777764
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0028 Score=61.82 Aligned_cols=115 Identities=23% Similarity=0.114 Sum_probs=77.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHC-C--CeEEEEeCCCCCCCchHHHHHHhhhcCC-ceEEEEeecCCHHHHHHhhccCCc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR-G--DGVLGLDNFNSYYDPSLKRARQKLLQKH-QVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~-G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~-~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
|+|.|+||+|.||..++..|..+ + .+++++++.. . .+....+..... .+.+... .. +...+.++++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~----~~G~a~Dl~~~~~~~~v~~~-~~--~~~~~~~~~a-- 70 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-V----TPGVAVDLSHIPTAVKIKGF-SG--EDATPALEGA-- 70 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-T----HHHHHHHHHTSCSSEEEEEE-CS--SCCHHHHTTC--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-C----chhHHHHhhCCCCCceEEEe-cC--CCcHHHhCCC--
Confidence 68999999999999999999875 5 5899999854 1 111222222211 2222211 01 1123466777
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||-.||.. +-...+..+.++.|+.-...+.+.+.+......++.+|.
T Consensus 71 Divii~ag~~--rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 71 DVVLISAGVA--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp SEEEECCSCS--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CEEEEeCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 9999999873 222345678899999999999999988876656777764
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00089 Score=65.90 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=53.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~ 192 (476)
..+.+|||+||+|.||..+++.+...|++|++++++.+ ....... -+... ..|..+.+ .+.++..+.
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~-----~~~~~~~----~ga~~-~~~~~~~~~~~~~~~~~~~~ 216 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDE-----KLKIAKE----YGAEY-LINASKEDILRQVLKFTNGK 216 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHH-----HHHHHHH----TTCSE-EEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH-----HHHHHHH----cCCcE-EEeCCCchHHHHHHHHhCCC
Confidence 46789999999999999999999999999999998332 1111111 12221 23544433 344444455
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||+++|.
T Consensus 217 g~D~vid~~g~ 227 (334)
T 3qwb_A 217 GVDASFDSVGK 227 (334)
T ss_dssp CEEEEEECCGG
T ss_pred CceEEEECCCh
Confidence 68999999985
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.002 Score=63.10 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=75.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
++.|+|.|+|| |.+|..++..|+.+| .+|++++++.+..+.......... .....+.+.. | + .+.++++
T Consensus 4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~~~a 75 (317)
T 3d0o_A 4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDCHDA 75 (317)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGGTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHhCCC
Confidence 34579999998 999999999999888 489999874321111001111111 0012344442 2 2 3457777
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|+||..+|.... ........+..|+.-...+.+.+.+......+|.+|
T Consensus 76 --DvVvi~ag~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 76 --DLVVICAGAAQK--PGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp --SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred --CEEEECCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 999999987322 123445678889999999999988887664666654
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00066 Score=66.78 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=53.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH---HHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~~~~ 192 (476)
..+++|||+||+|.||..+++.+...|++|++++|+.+ ..... .. + +.. ...|..+.+. +.+...+.
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~----~~~~~-~~-~---g~~-~~~d~~~~~~~~~i~~~~~~~ 213 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEE----KAETA-RK-L---GCH-HTINYSTQDFAEVVREITGGK 213 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHH----HHHHH-HH-H---TCS-EEEETTTSCHHHHHHHHHTTC
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHH-HH-c---CCC-EEEECCCHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999998432 11111 11 1 221 2246665443 33333344
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||+++|.
T Consensus 214 ~~d~vi~~~g~ 224 (333)
T 1wly_A 214 GVDVVYDSIGK 224 (333)
T ss_dssp CEEEEEECSCT
T ss_pred CCeEEEECCcH
Confidence 67999999985
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0011 Score=64.87 Aligned_cols=113 Identities=16% Similarity=0.125 Sum_probs=72.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhc----CCceEEEEeecCCHHHHHHhhc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ----KHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
+.++|.|+|| |.+|..++..|+..+. +|+++|+..+. .+....+... ...+.+.. | + .+.++
T Consensus 4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~----~~g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~ 71 (318)
T 1ez4_A 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDR----TKGDALDLEDAQAFTAPKKIYS-G--E----YSDCK 71 (318)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH----HHHHHHHHHGGGGGSCCCEEEE-C--C----GGGGT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchH----HHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhC
Confidence 4579999998 9999999999999875 89999984321 1111111111 12444442 2 2 33577
Q ss_pred cCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 191 VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
++ |+||..++.... ......+.+..|+.....+++.+.+......+|.+|-
T Consensus 72 ~a--DvVii~ag~~~~--~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 72 DA--DLVVITAGAPQK--PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp TC--SEEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CC--CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 77 999999987321 1122345678899999999999988876657776654
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0018 Score=63.60 Aligned_cols=114 Identities=16% Similarity=0.101 Sum_probs=75.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcC----CceEEEEeecCCHHHHHHhh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQK----HQVFIVEGDLNDAPLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~ 189 (476)
.+.++|.|+|| |.+|..++..|+..+. +|+++|+..+. .+....+.... ..+.+.. | + .+.+
T Consensus 7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~----~~g~~~dl~~~~~~~~~~~i~~-~--~----~~a~ 74 (326)
T 2zqz_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDK----TKGDAIDLSNALPFTSPKKIYS-A--E----YSDA 74 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHH----HHHHHHHHHTTGGGSCCCEEEE-C--C----GGGG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchH----hHHHHHHHHHHHHhcCCeEEEE-C--C----HHHh
Confidence 35589999998 9999999999998875 89999983321 11111111111 2444442 2 2 3457
Q ss_pred ccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 190 DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
+++ |+||..++.... ........+..|+.....+++.+.+......+|.+|-
T Consensus 75 ~~a--DvVii~ag~~~k--~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 75 KDA--DLVVITAGAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp GGC--SEEEECCCCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred CCC--CEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 777 999999987321 2234456788899999999999888876657777654
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=66.26 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=31.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
|+|+|+||+|.+|+.+++.|++.|++|++.+|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5899999999999999999999999999999853
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0011 Score=65.39 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=73.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHh--hhc-CCceEEEEeecCCHHHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQK--LLQ-KHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~--~~~-~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
.+.|+|.|+|| |.+|..++..|+..|+ +|++.+++.+..+......... ... ..++.. . +| +++.+++
T Consensus 7 ~~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t---~d---~~ea~~~ 78 (331)
T 1pzg_A 7 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-E---YS---YEAALTG 78 (331)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-E---CS---HHHHHTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-e---CC---HHHHhCC
Confidence 34579999998 9999999999999998 9999999764333211111111 111 112221 1 23 4446777
Q ss_pred CCccEEEEccccCChhhhh----cChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 192 VPFTHVLHLAAQAGVRYAM----QNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~----~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
+ |+||-.+|...-. .. .........|+.-...+++.+.+......+|.+|
T Consensus 79 a--DiVi~a~g~p~~~-g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 132 (331)
T 1pzg_A 79 A--DCVIVTAGLTKVP-GKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 132 (331)
T ss_dssp C--SEEEECCSCSSCT-TCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred C--CEEEEccCCCCCC-CcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 7 9999999763211 11 0334557778888888988888776543444443
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.001 Score=65.99 Aligned_cols=78 Identities=19% Similarity=0.209 Sum_probs=53.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH---HHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~~~~ 192 (476)
..+++|||+||+|.||..+++.+...|++|++++|+.+ ... .... .+.. ...|..+.+. +.+...+.
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~----~~~-~~~~----~ga~-~~~d~~~~~~~~~~~~~~~~~ 238 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE----GQK-IVLQ----NGAH-EVFNHREVNYIDKIKKYVGEK 238 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH----HHH-HHHH----TTCS-EEEETTSTTHHHHHHHHHCTT
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChh----HHH-HHHH----cCCC-EEEeCCCchHHHHHHHHcCCC
Confidence 46789999999999999999999999999999998432 111 1111 1222 2246666443 33334444
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||+++|.
T Consensus 239 ~~D~vi~~~G~ 249 (351)
T 1yb5_A 239 GIDIIIEMLAN 249 (351)
T ss_dssp CEEEEEESCHH
T ss_pred CcEEEEECCCh
Confidence 67999999974
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00069 Score=66.81 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=68.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCccE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTH 196 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~ 196 (476)
.++|+|+|+ |.+|+.+++.|.++|+ |++++++.+ .. + ....++.++.+|.+|++.++++ ++++ |.
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~-------~~--~-~~~~~~~~i~gd~~~~~~L~~a~i~~a--~~ 180 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENV-------RK--K-VLRSGANFVHGDPTRVSDLEKANVRGA--RA 180 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGG-------HH--H-HHHTTCEEEESCTTSHHHHHHTCSTTE--EE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChh-------hh--h-HHhCCcEEEEeCCCCHHHHHhcChhhc--cE
Confidence 568999997 9999999999999999 999987432 11 1 2235899999999999999887 6666 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIV 241 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V 241 (476)
||-+.+. .+.|+ .++..+++.+...+++
T Consensus 181 vi~~~~~-------------d~~n~----~~~~~ar~~~~~~~ii 208 (336)
T 1lnq_A 181 VIVDLES-------------DSETI----HCILGIRKIDESVRII 208 (336)
T ss_dssp EEECCSS-------------HHHHH----HHHHHHHTTCTTSEEE
T ss_pred EEEcCCc-------------cHHHH----HHHHHHHHHCCCCeEE
Confidence 9977642 01233 4556677777654555
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0019 Score=63.06 Aligned_cols=118 Identities=19% Similarity=0.104 Sum_probs=76.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCC-CCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhccC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN-SYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~-~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
+.++|.|+|+ |.+|..++..|+..|+ +|++.++.. +...+.......+. .......+...+ |. +.++++
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~--d~----~a~~~a 79 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTS--DY----ADTADS 79 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEES--CG----GGGTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcC--CH----HHhCCC
Confidence 4579999997 9999999999999999 999999852 10000000011110 001122222221 22 356777
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||..+|... .......+.+..|+...+.+.+.+.+.+....++.+|.
T Consensus 80 --DvVIiaag~p~--kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 80 --DVVVITAGIAR--KPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp --SEEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred --CEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 99999998732 22345567889999999999999988776656777764
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0004 Score=60.79 Aligned_cols=74 Identities=15% Similarity=0.072 Sum_probs=52.3
Q ss_pred ChhhHHHHHHHHHCCCeEEEEeCCCCCCCch--HHHHHHhhhcCCceEEEEeecCCH--HHHHHhhccC----CccEEEE
Q 011841 128 GFVGSHCSLALKKRGDGVLGLDNFNSYYDPS--LKRARQKLLQKHQVFIVEGDLNDA--PLLTKLFDVV----PFTHVLH 199 (476)
Q Consensus 128 G~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~--~~~~~~~~~~~~~v~~~~~Dl~d~--~~l~~~~~~~----~~d~Vi~ 199 (476)
|.++..+++.|++.|++|++..|........ ....... ....+..+.+|++++ ++++++++.. +-|++||
T Consensus 26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~--~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVn 103 (157)
T 3gxh_A 26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQ--AGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVH 103 (157)
T ss_dssp BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHH--TTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHH--cCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEEE
Confidence 6899999999999999999998866543221 1111111 123567788899998 8888776532 2399999
Q ss_pred cccc
Q 011841 200 LAAQ 203 (476)
Q Consensus 200 ~Ag~ 203 (476)
|||.
T Consensus 104 nAgg 107 (157)
T 3gxh_A 104 CLAN 107 (157)
T ss_dssp CSBS
T ss_pred CCCC
Confidence 9986
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0011 Score=68.35 Aligned_cols=75 Identities=20% Similarity=0.309 Sum_probs=58.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d 195 (476)
+.|+|+|.|+ |-+|++|++.|.++||+|++++++.+ . .....+..++.++.||-++++.++++ ++.+ |
T Consensus 2 ~~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~-------~-~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~a--d 70 (461)
T 4g65_A 2 NAMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGD-------R-LRELQDKYDLRVVNGHASHPDVLHEAGAQDA--D 70 (461)
T ss_dssp CCEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHH-------H-HHHHHHHSSCEEEESCTTCHHHHHHHTTTTC--S
T ss_pred CcCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH-------H-HHHHHHhcCcEEEEEcCCCHHHHHhcCCCcC--C
Confidence 5689999997 99999999999999999999997332 1 11222233788999999999998876 4555 9
Q ss_pred EEEEccc
Q 011841 196 HVLHLAA 202 (476)
Q Consensus 196 ~Vi~~Ag 202 (476)
.+|-+.+
T Consensus 71 ~~ia~t~ 77 (461)
T 4g65_A 71 MLVAVTN 77 (461)
T ss_dssp EEEECCS
T ss_pred EEEEEcC
Confidence 8885543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00084 Score=66.08 Aligned_cols=79 Identities=23% Similarity=0.242 Sum_probs=52.9
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhc--c
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFD--V 191 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~--~ 191 (476)
...+++|||+||+|.||..+++.+...|++|++++|+.+ +.+.. ..-+.. ...|..+.+..+.+.+ +
T Consensus 147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~---------~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~ 216 (336)
T 4b7c_A 147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAE---------KCRFLVEELGFD-GAIDYKNEDLAAGLKRECP 216 (336)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH---------HHHHHHHTTCCS-EEEETTTSCHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHHcCCC-EEEECCCHHHHHHHHHhcC
Confidence 356789999999999999999999999999999997332 11111 122332 2246655443333322 2
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
.++|+||+++|.
T Consensus 217 ~~~d~vi~~~g~ 228 (336)
T 4b7c_A 217 KGIDVFFDNVGG 228 (336)
T ss_dssp TCEEEEEESSCH
T ss_pred CCceEEEECCCc
Confidence 357999999984
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00099 Score=66.22 Aligned_cols=78 Identities=17% Similarity=0.089 Sum_probs=53.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH---HHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~~~~ 192 (476)
..+.+|||+||+|.||..+++.+...|++|++++|+.+ ..... ... +.. ...|..+.+. +.+...+.
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~----~~~~~-~~~----g~~-~~~~~~~~~~~~~~~~~~~~~ 230 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQK----KLQMA-EKL----GAA-AGFNYKKEDFSEATLKFTKGA 230 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHH-HHH----TCS-EEEETTTSCHHHHHHHHTTTS
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHH-HHc----CCc-EEEecCChHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999998432 11111 111 221 2346665443 33333334
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||+++|.
T Consensus 231 ~~d~vi~~~G~ 241 (354)
T 2j8z_A 231 GVNLILDCIGG 241 (354)
T ss_dssp CEEEEEESSCG
T ss_pred CceEEEECCCc
Confidence 67999999985
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00053 Score=67.81 Aligned_cols=78 Identities=19% Similarity=0.156 Sum_probs=51.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH----HHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP----LLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~----~l~~~~~~ 191 (476)
..+++|||+||+|.||..+++.+...|++|++++|+.+ ....... .-+... ..|..+.+ .+.++..
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~----~~~~~~~----~~g~~~-~~d~~~~~~~~~~~~~~~~- 223 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKE----KVDLLKT----KFGFDD-AFNYKEESDLTAALKRCFP- 223 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH----HHHHHHH----TSCCSE-EEETTSCSCSHHHHHHHCT-
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHH----HcCCce-EEecCCHHHHHHHHHHHhC-
Confidence 46789999999999999999999999999999998321 1111111 112221 23665532 3333322
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
.++|+||+++|.
T Consensus 224 ~~~d~vi~~~g~ 235 (345)
T 2j3h_A 224 NGIDIYFENVGG 235 (345)
T ss_dssp TCEEEEEESSCH
T ss_pred CCCcEEEECCCH
Confidence 357999999974
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0028 Score=61.75 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=69.4
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhc-----CCceEEEEeecCCHHHHHHhhccC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQ-----KHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~-----~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
|+|.|+|| |.+|..++..|+..|+ +|++.+++.+..+ ....+... .....+... +| + +.++++
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~----g~~~dl~~~~~~~~~~~~i~~t--~d---~-~a~~~a 71 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQ----GKALDLYEASPIEGFDVRVTGT--NN---Y-ADTANS 71 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHH----HHHHHHHTTHHHHTCCCCEEEE--SC---G-GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHH----HHHHhHHHhHhhcCCCeEEEEC--CC---H-HHHCCC
Confidence 68999998 9999999999999997 8999988654222 11111111 112222221 22 2 347777
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||..+|.... ......+....|+.....+.+.+.+.... .+|.+.|
T Consensus 72 --D~Vi~a~g~p~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~-a~vi~~t 119 (309)
T 1ur5_A 72 --DVIVVTSGAPRK--PGMSREDLIKVNADITRACISQAAPLSPN-AVIIMVN 119 (309)
T ss_dssp --SEEEECCCC----------CHHHHHHHHHHHHHHHHHGGGCTT-CEEEECC
T ss_pred --CEEEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEcC
Confidence 999999986321 11122345778888899999998888754 4444433
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0029 Score=62.11 Aligned_cols=116 Identities=14% Similarity=0.047 Sum_probs=75.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhc-CCceEEE-EeecCCHHHHHHhhccC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIV-EGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~-~~Dl~d~~~l~~~~~~~ 192 (476)
..++|.|+|+ |.+|..++..|+..|. +|+++++..+......... .+... .....+. ..|+ + .++++
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL-~~~~~~~~~~~i~~t~d~------~-~~~da 90 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDL-EHGSLFLHTAKIVSGKDY------S-VSAGS 90 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHH-HHHGGGSCCSEEEEESSS------C-SCSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHh-hhhhhcccCCeEEEcCCH------H-HhCCC
Confidence 5689999998 9999999999999986 8999998432111110001 11111 1122222 2232 2 26677
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||-.||... ....+..+.+..|+.-...+++.+.+.+....++.+|.
T Consensus 91 --DiVIitaG~p~--kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 91 --KLVVITAGARQ--QEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp --SEEEECCSCCC--CSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred --CEEEEeCCCCC--CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 99999998732 12234456778899999999999888876656776664
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0012 Score=63.07 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=32.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
..+++|+|+|+ |.+|+.++..|++.|++|++++|..
T Consensus 117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 117 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCH
Confidence 46789999998 8899999999999999999999843
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00087 Score=64.22 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=27.9
Q ss_pred CCCEEEEECCCChhhHHHHHHHHH-CCCeEEEEeC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDN 150 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~-~G~~V~~~~R 150 (476)
+.|+|.|+|++|.+|+.+++.+.+ .|++|+++.+
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d 38 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALE 38 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEEC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 347999999999999999999885 4788875543
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0038 Score=60.29 Aligned_cols=112 Identities=19% Similarity=0.132 Sum_probs=76.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhh-----cCCceEEEEeecCCHHHHHHhhcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLL-----QKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~-----~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
|+|.|+|| |+||+.++-.|+.++ .++.++|..... .+-...++. -.....+...+ |. +.+++
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~----~~G~a~DL~h~~~~~~~~~~i~~~~--d~----~~~~~ 69 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDL----AVGEAMDLAHAAAGIDKYPKIVGGA--DY----SLLKG 69 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHH----HHHHHHHHHHHHGGGTCCCEEEEES--CG----GGGTT
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCc----chhhhhhhhcccccCCCCCeEecCC--CH----HHhCC
Confidence 78999996 999999999999887 479999874321 111111111 11123333322 22 24667
Q ss_pred CCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
+ |+||-.||.. +....+..+.++.|..-.+.+.+.+.+......++.+|.
T Consensus 70 a--DvVvitAG~p--rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 70 S--EIIVVTAGLA--RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp C--SEEEECCCCC--CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred C--CEEEEecCCC--CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 7 9999999973 233456778999999999999999999887756666665
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0073 Score=59.62 Aligned_cols=175 Identities=18% Similarity=0.128 Sum_probs=102.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-------eEEEEeCCCCCCCchHHHHHHhhh--cCCc-eEEEEeecCCHHHH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKLL--QKHQ-VFIVEGDLNDAPLL 185 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-------~V~~~~R~~~~~~~~~~~~~~~~~--~~~~-v~~~~~Dl~d~~~l 185 (476)
++..+|.|+||+|.||+.++-.|+.... ++.++|..... +..+-...+.. ..+. ..++..+ | .
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~--~~~~Gva~DL~~~~~~~~~~~~~~~--~---~ 94 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPAL--KALAGVEAELEDCAFPLLDKVVVTA--D---P 94 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGH--HHHHHHHHHHHHTTCTTEEEEEEES--C---H
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCcc--ccchhhhhhhhhcCccCCCcEEEcC--C---h
Confidence 4556999999999999999999987642 68888863210 01111111111 1111 2222221 2 3
Q ss_pred HHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCcc---ccCCCCCCCCCCCC
Q 011841 186 TKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSS---VYGLNTQVPFSESH 261 (476)
Q Consensus 186 ~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~---vyg~~~~~~~~E~~ 261 (476)
.+.++++ |+||-.||.. +-......+.++.|..-.+.+.+.+.+... ...++.+|.-. +|-... ...
T Consensus 95 ~~a~~~a--dvVvi~aG~p--rkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~~~-----~~~ 165 (345)
T 4h7p_A 95 RVAFDGV--AIAIMCGAFP--RKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALILLK-----SAQ 165 (345)
T ss_dssp HHHTTTC--SEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHH-----HTT
T ss_pred HHHhCCC--CEEEECCCCC--CCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHHHH-----Hcc
Confidence 5678888 9999999973 333456678999999999999999877543 22456666421 110000 000
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~ 306 (476)
-..++...-+.+.+..-++-..+++..|++..-+.-..|.|..+.
T Consensus 166 g~~~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~ 210 (345)
T 4h7p_A 166 GKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS 210 (345)
T ss_dssp TCSCGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST
T ss_pred CCCCcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCCC
Confidence 001223333444555566666666777887777766667776543
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.002 Score=62.65 Aligned_cols=37 Identities=41% Similarity=0.444 Sum_probs=32.2
Q ss_pred CCCE-EEEE-CCC-----------------ChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 117 NGMT-VLVT-GAA-----------------GFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 117 ~~~~-VLVt-Gat-----------------G~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
.+++ |||| |+| |-.|.+++++++++|++|+.+.+..+
T Consensus 35 ~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 35 QGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp TTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred cCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 4566 9998 677 89999999999999999999998654
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0019 Score=64.13 Aligned_cols=78 Identities=17% Similarity=0.102 Sum_probs=52.2
Q ss_pred CCC--CEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH---HHHhh
Q 011841 116 PNG--MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLF 189 (476)
Q Consensus 116 ~~~--~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~ 189 (476)
..+ ++|||+||+|.||..+++.+...|+ +|+++++..+ ...... . .-+.. ...|..+.+. +.+..
T Consensus 157 ~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~----~~~~~~-~---~~g~~-~~~d~~~~~~~~~~~~~~ 227 (357)
T 2zb4_A 157 TAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHE----KCILLT-S---ELGFD-AAINYKKDNVAEQLRESC 227 (357)
T ss_dssp CTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHH----HHHHHH-H---TSCCS-EEEETTTSCHHHHHHHHC
T ss_pred CCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHH----HHHHHH-H---HcCCc-eEEecCchHHHHHHHHhc
Confidence 356 8999999999999999999999999 9999998321 111111 1 11222 2346665433 33333
Q ss_pred ccCCccEEEEcccc
Q 011841 190 DVVPFTHVLHLAAQ 203 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~ 203 (476)
.+ ++|+||+++|.
T Consensus 228 ~~-~~d~vi~~~G~ 240 (357)
T 2zb4_A 228 PA-GVDVYFDNVGG 240 (357)
T ss_dssp TT-CEEEEEESCCH
T ss_pred CC-CCCEEEECCCH
Confidence 34 67999999983
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0021 Score=62.61 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=66.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcC----CceEEEEeecCCHHHHHHhhccC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQK----HQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
|+|.|+|| |.+|..++..|+..|+ +|++.+++.+. ......+.... ..+.+... |. +.++++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~----~~~~~~~l~~~~~~~~~~~i~~~---~~----~a~~~a 68 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDR----AQAEAEDIAHAAPVSHGTRVWHG---GH----SELADA 68 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHH----HHHHHHHHTTSCCTTSCCEEEEE---CG----GGGTTC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHH----HHHHHHhhhhhhhhcCCeEEEEC---CH----HHhCCC
Confidence 58999998 9999999999999998 99999985321 11111111111 12333321 22 346777
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||.+++.... ......+.+..|+.....+++.+.+......+|.+|-
T Consensus 69 --DvVIi~~~~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tN 117 (304)
T 2v6b_A 69 --QVVILTAGANQK--PGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSN 117 (304)
T ss_dssp --SEEEECC--------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSS
T ss_pred --CEEEEcCCCCCC--CCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 999999975221 1122334567788888999988877654435555543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0017 Score=63.66 Aligned_cols=78 Identities=22% Similarity=0.151 Sum_probs=53.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~ 192 (476)
..+.+|||+||+|.||..+++.+...|++|++++++.+ ... ..... +.. ...|..+.+ .+.+...+.
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~----~~~-~~~~~----Ga~-~~~~~~~~~~~~~~~~~~~~~ 208 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPE----KAA-HAKAL----GAW-ETIDYSHEDVAKRVLELTDGK 208 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHH----HHH-HHHHH----TCS-EEEETTTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHH----HHH-HHHHc----CCC-EEEeCCCccHHHHHHHHhCCC
Confidence 46789999999999999999999999999999997432 111 11111 221 123554433 344444445
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||+++|.
T Consensus 209 g~Dvvid~~g~ 219 (325)
T 3jyn_A 209 KCPVVYDGVGQ 219 (325)
T ss_dssp CEEEEEESSCG
T ss_pred CceEEEECCCh
Confidence 68999999985
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0068 Score=60.40 Aligned_cols=176 Identities=14% Similarity=0.074 Sum_probs=99.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC--e---EEEEeCCCCCCCchHHHHHHhhhcC--CceEEEEeecCCHHHHHHh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--G---VLGLDNFNSYYDPSLKRARQKLLQK--HQVFIVEGDLNDAPLLTKL 188 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~--~---V~~~~R~~~~~~~~~~~~~~~~~~~--~~v~~~~~Dl~d~~~l~~~ 188 (476)
...++|.|+||+|.||..++-.|+..+. + |.+.+.+.+......+....++... +-..-+. +.+ ...+.
T Consensus 30 ~~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~--i~~--~~y~~ 105 (375)
T 7mdh_A 30 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVS--IGI--DPYEV 105 (375)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEE--EES--CHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcE--Eec--CCHHH
Confidence 3557999999999999999999998763 2 6665433222111122222222221 1111111 111 13456
Q ss_pred hccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCcc---ccCCCCCCCCCCCCCCC
Q 011841 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSS---VYGLNTQVPFSESHRTD 264 (476)
Q Consensus 189 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~---vyg~~~~~~~~E~~~~~ 264 (476)
++++ |+||-.||.. +.......+.++.|+.-.+.+.+.+.+. +....|+.+|.-. .|-.....+ ..
T Consensus 106 ~~da--DvVVitag~p--rkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia~k~sg------~~ 175 (375)
T 7mdh_A 106 FEDV--DWALLIGAKP--RGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALICLKNAP------DI 175 (375)
T ss_dssp TTTC--SEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCT------TS
T ss_pred hCCC--CEEEEcCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHHHHHcC------CC
Confidence 7777 9999999862 2233556788999999999999988874 5554677776521 110000000 00
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCC
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWG 305 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~ 305 (476)
++...-+.+-+..-++-..+++..|++..-++--+|+|..+
T Consensus 176 ~~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHg 216 (375)
T 7mdh_A 176 PAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS 216 (375)
T ss_dssp CGGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSS
T ss_pred CccEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecCC
Confidence 11111222344555555556666777655555446788754
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0041 Score=61.94 Aligned_cols=100 Identities=18% Similarity=0.104 Sum_probs=63.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~ 192 (476)
..+.+|||+||+|.||..+++.+...|++|+++++..+ ..... .. -+... ..|..+.+ .+.+.. +.
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~----~~~~~-~~----~Ga~~-~~~~~~~~~~~~~~~~~-~~ 230 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDE----KSAFL-KS----LGCDR-PINYKTEPVGTVLKQEY-PE 230 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHH----HHHHH-HH----TTCSE-EEETTTSCHHHHHHHHC-TT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHH----HHHHH-HH----cCCcE-EEecCChhHHHHHHHhc-CC
Confidence 46789999999999999999999999999999998321 11111 11 12222 13444432 233322 23
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
++|+||+++|. . .....++.++..| ++|.+++..
T Consensus 231 g~D~vid~~g~--~----------------~~~~~~~~l~~~G---~iv~~g~~~ 264 (362)
T 2c0c_A 231 GVDVVYESVGG--A----------------MFDLAVDALATKG---RLIVIGFIS 264 (362)
T ss_dssp CEEEEEECSCT--H----------------HHHHHHHHEEEEE---EEEECCCGG
T ss_pred CCCEEEECCCH--H----------------HHHHHHHHHhcCC---EEEEEeCCC
Confidence 57999999984 0 1234455555544 789887654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.004 Score=60.72 Aligned_cols=111 Identities=20% Similarity=0.242 Sum_probs=75.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhc----CCceEEEEeecCCHHHHHHhhccC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQ----KHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~----~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
|+|.|+|| |.+|..++..|+..+ .+|+++|++.+. .+....+... ...+.+.. | + .+.++++
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k----~~g~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~a 68 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKL----AQAHAEDILHATPFAHPVWVWA-G--S----YGDLEGA 68 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHH----HHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGTTE
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhH----HHHHHHHHHHhHhhcCCeEEEE-C--C----HHHhCCC
Confidence 68999998 999999999999987 689999984321 1111111111 12344443 2 2 2347777
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||..++.... ........+..|+.....+++.+.+.+....+|.+|-
T Consensus 69 --D~Vii~ag~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 69 --RAVVLAAGVAQR--PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp --EEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred --CEEEECCCCCCC--CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 999999987322 1234456788899999999999888876657776654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0024 Score=62.94 Aligned_cols=75 Identities=15% Similarity=0.081 Sum_probs=49.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~ 192 (476)
..+++|||+|| |.||..+++.+...|++|++++|+.+ ... ... .-+... ..|..+.+ .+.++..
T Consensus 163 ~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~----~~~-~~~----~lGa~~-~~d~~~~~~~~~~~~~~~-- 229 (339)
T 1rjw_A 163 KPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDE----KLE-LAK----ELGADL-VVNPLKEDAAKFMKEKVG-- 229 (339)
T ss_dssp CTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHH----HHH-HHH----HTTCSE-EECTTTSCHHHHHHHHHS--
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHH----HHH-HHH----HCCCCE-EecCCCccHHHHHHHHhC--
Confidence 45789999999 77999999999999999999997322 111 111 113222 24665432 3333332
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||+++|.
T Consensus 230 ~~d~vid~~g~ 240 (339)
T 1rjw_A 230 GVHAAVVTAVS 240 (339)
T ss_dssp SEEEEEESSCC
T ss_pred CCCEEEECCCC
Confidence 56999999984
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0035 Score=60.47 Aligned_cols=110 Identities=16% Similarity=0.151 Sum_probs=68.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCC-------------CCchHHHHHHh----hhcCCceEEEEe
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY-------------YDPSLKRARQK----LLQKHQVFIVEG 177 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~-------------~~~~~~~~~~~----~~~~~~v~~~~~ 177 (476)
....+|+|.|+ |.+|..+++.|+..|. +++++|.+.-. .-..+.....+ ....-.++.+..
T Consensus 34 L~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~ 112 (292)
T 3h8v_A 34 IRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY 112 (292)
T ss_dssp GGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred HhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence 46679999997 9999999999999996 67777765411 00111111111 112234566666
Q ss_pred ecCCHHHHHHhhc---------cCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 178 DLNDAPLLTKLFD---------VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 178 Dl~d~~~l~~~~~---------~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
++++.+.++.+++ ..++|+||++.- |...-..+.++|.+.+.. +|+.+.
T Consensus 113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D-----------------n~~~R~~in~~c~~~~~P--li~~gv 170 (292)
T 3h8v_A 113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD-----------------NFEARMTINTACNELGQT--WMESGV 170 (292)
T ss_dssp CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS-----------------SHHHHHHHHHHHHHHTCC--EEEEEE
T ss_pred cCCcHHHHHHHhhhhcccccccCCCCCEEEECCc-----------------chhhhhHHHHHHHHhCCC--EEEeee
Confidence 7777666766652 124599998763 222234566788888874 665543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.003 Score=65.02 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=32.9
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
...+.+|||+||+|.||...++.+...|.+|+++++
T Consensus 226 ~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~ 261 (456)
T 3krt_A 226 MKQGDNVLIWGASGGLGSYATQFALAGGANPICVVS 261 (456)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 356789999999999999999999999999999987
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0031 Score=62.52 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=52.6
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhcc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDV 191 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~ 191 (476)
...+.+|||+||+|.||..+++.+...|++|++++++.+. . ....+ + +... ..|..+.+ .+.++. +
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~----~-~~~~~-l---Ga~~-~~~~~~~~~~~~~~~~~-~ 233 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGK----C-EACER-L---GAKR-GINYRSEDFAAVIKAET-G 233 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHH----H-HHHHH-H---TCSE-EEETTTSCHHHHHHHHH-S
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHH----H-HHHHh-c---CCCE-EEeCCchHHHHHHHHHh-C
Confidence 3467899999999999999999999999999999984321 1 11111 1 2211 23554433 333333 4
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
.++|+||+++|.
T Consensus 234 ~g~Dvvid~~g~ 245 (353)
T 4dup_A 234 QGVDIILDMIGA 245 (353)
T ss_dssp SCEEEEEESCCG
T ss_pred CCceEEEECCCH
Confidence 467999999985
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0051 Score=59.91 Aligned_cols=84 Identities=12% Similarity=0.162 Sum_probs=56.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..+++|||+|+ |.+|+.++..|++.|. +|++++|..+..++ ............+..+...++.+.+.+.+.+...
T Consensus 146 l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~-a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~-- 221 (312)
T 3t4e_A 146 MRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEK-AVAFAKRVNENTDCVVTVTDLADQHAFTEALASA-- 221 (312)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHH-HHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHC--
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHH-HHHHHHHhhhccCcceEEechHhhhhhHhhccCc--
Confidence 57889999997 9999999999999998 89999996332111 1111111212224445556776754456666666
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+|||+...
T Consensus 222 DiIINaTp~ 230 (312)
T 3t4e_A 222 DILTNGTKV 230 (312)
T ss_dssp SEEEECSST
T ss_pred eEEEECCcC
Confidence 999998754
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0054 Score=59.96 Aligned_cols=115 Identities=23% Similarity=0.152 Sum_probs=71.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhhccC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
..++|.|+|+ |.+|..++..|+..|. +|++.+++.+... .......+... ...+.+.. | +. +.++++
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~-~~~~dl~~~~~~~~~~~~i~~-~--~~----~al~~a 75 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAI-GDAMDFNHGKVFAPKPVDIWH-G--DY----DDCRDA 75 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHH-HHHHHHHHHTTSSSSCCEEEE-C--CG----GGTTTC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHH-HHHhhHHHHhhhcCCCeEEEc-C--cH----HHhCCC
Confidence 4579999998 9999999999988874 8999998532111 00011111111 11344442 2 22 357777
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|+||.+++...... ....+.+..|..-...+++.+.+......++.+|
T Consensus 76 --DvViia~~~~~~~g--~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 76 --DLVVICAGANQKPG--ETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp --SEEEECCSCCCCTT--TCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred --CEEEEcCCCCCCCC--CCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 99999998743221 1224456778888888888888776543555554
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0031 Score=62.31 Aligned_cols=76 Identities=20% Similarity=0.143 Sum_probs=50.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~ 192 (476)
.+.+|||+|| |.||..+++.+...|+ +|++++++.+ ..... ... +... ..|..+.+ .+.++..+.
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~----~~~~~-~~~----Ga~~-~~~~~~~~~~~~v~~~~~g~ 235 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDF----RRELA-KKV----GADY-VINPFEEDVVKEVMDITDGN 235 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHH----HHHHH-HHH----TCSE-EECTTTSCHHHHHHHHTTTS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH----HHHHH-HHh----CCCE-EECCCCcCHHHHHHHHcCCC
Confidence 6789999999 9999999999999999 9999988422 11111 111 2221 13554433 333444444
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||+++|.
T Consensus 236 g~D~vid~~g~ 246 (348)
T 2d8a_A 236 GVDVFLEFSGA 246 (348)
T ss_dssp CEEEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 67999999984
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0029 Score=62.43 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=52.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-HHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~~~ 194 (476)
..+.+|||+||+|.||..+++.+...|++|++++++.+. ..... .. . --.++..+ .+ .+.+.++..+.++
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~----~~~~~-~~-g--a~~v~~~~-~~~~~~v~~~~~~~g~ 228 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAA----TEFVK-SV-G--ADIVLPLE-EGWAKAVREATGGAGV 228 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGG----HHHHH-HH-T--CSEEEESS-TTHHHHHHHHTTTSCE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHH-hc-C--CcEEecCc-hhHHHHHHHHhCCCCc
Confidence 467899999999999999999999999999999985432 11111 11 1 11223222 22 2344555555568
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||+++|.
T Consensus 229 Dvvid~~g~ 237 (342)
T 4eye_A 229 DMVVDPIGG 237 (342)
T ss_dssp EEEEESCC-
T ss_pred eEEEECCch
Confidence 999999985
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.007 Score=59.32 Aligned_cols=119 Identities=11% Similarity=0.091 Sum_probs=71.4
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..|+|.|+|| |.+|..++..|+..|+ +|++.+++.+..+........... ......+... +| + +.++++
T Consensus 3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t--~d---~-~al~~a-- 73 (322)
T 1t2d_A 3 PKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS--NT---Y-DDLAGA-- 73 (322)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE--CC---G-GGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC--CC---H-HHhCCC--
Confidence 3479999998 9999999999999998 999999865433211111111000 0112222221 22 2 457777
Q ss_pred cEEEEccccCChhhhhc----ChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 195 THVLHLAAQAGVRYAMQ----NPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~----~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||..+|...- ..+. ...+....|+.-...+.+.+.+......+|.+|-
T Consensus 74 D~Vi~a~g~p~k-~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 127 (322)
T 1t2d_A 74 DVVIVTAGFTKA-PGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127 (322)
T ss_dssp SEEEECCSCSSC-TTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CEEEEeCCCCCC-CCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999975211 0100 0234566788888888888777665435555543
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0033 Score=62.10 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=52.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH---HHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~~~ 191 (476)
..+++|||+||+|.||..+++.+... |++|++++++.+ ..... .. + +.. ...|..+.+. +.++...
T Consensus 169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~----~~~~~-~~-~---g~~-~~~~~~~~~~~~~~~~~~~~ 238 (347)
T 1jvb_A 169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE----AVEAA-KR-A---GAD-YVINASMQDPLAEIRRITES 238 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH----HHHHH-HH-H---TCS-EEEETTTSCHHHHHHHHTTT
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHH-HH-h---CCC-EEecCCCccHHHHHHHHhcC
Confidence 46789999999999999999999999 999999997432 11111 11 1 221 1236655443 4444431
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
-++|+||+++|.
T Consensus 239 ~~~d~vi~~~g~ 250 (347)
T 1jvb_A 239 KGVDAVIDLNNS 250 (347)
T ss_dssp SCEEEEEESCCC
T ss_pred CCceEEEECCCC
Confidence 267999999985
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.008 Score=58.68 Aligned_cols=118 Identities=13% Similarity=0.121 Sum_probs=69.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
+.|+|.|+|+ |.+|..++..|+..|+ +|++.+++.+..+.......... .......+... +| + +.++++
T Consensus 3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d---~-~a~~~a-- 73 (317)
T 2ewd_A 3 ERRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT--DD---Y-ADISGS-- 73 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE--SC---G-GGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC--CC---H-HHhCCC--
Confidence 4579999998 9999999999999998 99999997543222100000000 00111112211 22 2 346666
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||-+++..... .....+....|......+++.+.+......+|.+|.
T Consensus 74 DiVi~avg~p~~~--g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 74 DVVIITASIPGRP--KDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp SEEEECCCCSSCC--SSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CEEEEeCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 9999999762211 112223455577777778877766654434665554
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.011 Score=60.49 Aligned_cols=36 Identities=28% Similarity=0.283 Sum_probs=33.1
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
...+.+|||+||+|.||...++.+...|.+|+++++
T Consensus 218 ~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~ 253 (447)
T 4a0s_A 218 MKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVS 253 (447)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 356789999999999999999999999999999987
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0017 Score=64.88 Aligned_cols=75 Identities=15% Similarity=0.118 Sum_probs=51.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+++|+|+|+ |.+|..+++.|...|.+|++++|..+. ..... ..... .+.. +..+.+.+.+.+.++ |+
T Consensus 166 ~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r----~~~~~-~~~~~-~~~~---~~~~~~~~~~~~~~~--Dv 233 (361)
T 1pjc_A 166 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVER----LSYLE-TLFGS-RVEL---LYSNSAEIETAVAEA--DL 233 (361)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHH-HHHGG-GSEE---EECCHHHHHHHHHTC--SE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHH----HHHHH-HhhCc-eeEe---eeCCHHHHHHHHcCC--CE
Confidence 4589999999 999999999999999999999984321 11111 11111 2222 223456677777766 99
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
||++++.
T Consensus 234 VI~~~~~ 240 (361)
T 1pjc_A 234 LIGAVLV 240 (361)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 9999976
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.005 Score=60.81 Aligned_cols=76 Identities=21% Similarity=0.200 Sum_probs=50.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC--HHHHHHhhccCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVVPF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~~~~~~ 194 (476)
.+.+|||+||+|.||...++.+...|++|++++++.+ ..... .+ + +...+ .|..+ .+.+.++ .+.++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~~~-~~-l---Ga~~v-i~~~~~~~~~~~~~-~~~g~ 218 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNE----TIEWT-KK-M---GADIV-LNHKESLLNQFKTQ-GIELV 218 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHH----HHHHH-HH-H---TCSEE-ECTTSCHHHHHHHH-TCCCE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHH-Hh-c---CCcEE-EECCccHHHHHHHh-CCCCc
Confidence 5789999999999999999999999999999987332 11111 11 1 22211 23322 2334444 34467
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||+++|.
T Consensus 219 Dvv~d~~g~ 227 (346)
T 3fbg_A 219 DYVFCTFNT 227 (346)
T ss_dssp EEEEESSCH
T ss_pred cEEEECCCc
Confidence 999999874
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0037 Score=60.92 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=72.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
|+|.|+|+ |.+|..++..|+.. |++|++.+++.+..+.. .....+.. ......+... +|. ++ ++++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~-~~~l~~~~~~~~~~~~i~~t--~d~---~~-l~~a-- 70 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGK-ALDMYESGPVGLFDTKVTGS--NDY---AD-TANS-- 70 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHH-HHHHHTTHHHHTCCCEEEEE--SCG---GG-GTTC--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHH-HHhHHhhhhcccCCcEEEEC--CCH---HH-HCCC--
Confidence 68999998 99999999999985 79999999975432211 00001100 0112222211 232 23 5666
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||-+++.... ......+.+..|+.....+++.+.+......+|.++.
T Consensus 71 DvViiav~~p~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN 119 (310)
T 1guz_A 71 DIVIITAGLPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (310)
T ss_dssp SEEEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred CEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 999999975221 1123456777899989999998887765546666643
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.011 Score=57.84 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=70.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+|.|+|+ |.+|..++..|+..|+ +|++.+++.+..+...... ..... .....+.. +|. +.++++ |
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l-~~~~~~~~~~~i~~---~d~----~~~~~a--D 69 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDL-IHGTPFTRRANIYA---GDY----ADLKGS--D 69 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHH-HHHGGGSCCCEEEE---CCG----GGGTTC--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHH-HhhhhhcCCcEEEe---CCH----HHhCCC--C
Confidence 68999998 9999999999999999 9999998532111110000 11110 01222222 232 245666 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
+||-+++.... ......+....|+.....+++.+.+......+|.+|.
T Consensus 70 vViiav~~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tN 117 (319)
T 1a5z_A 70 VVIVAAGVPQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117 (319)
T ss_dssp EEEECCCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEEEccCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 99999986331 1122445677788888888888877654435665543
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0029 Score=62.41 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=54.4
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhcc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDV 191 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~ 191 (476)
...+.+|||+||+|.||..+++.+...|++|++++++.+.. .... .. +... ..|..+.+ .+.++..+
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~----~~~~-~l----ga~~-~~~~~~~~~~~~~~~~~~~ 211 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHT----EELL-RL----GAAY-VIDTSTAPLYETVMELTNG 211 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTH----HHHH-HH----TCSE-EEETTTSCHHHHHHHHTTT
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHH----HHHH-hC----CCcE-EEeCCcccHHHHHHHHhCC
Confidence 34678999999999999999999999999999999865432 1111 11 2211 23554433 34444444
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
.++|+||+++|.
T Consensus 212 ~g~Dvvid~~g~ 223 (340)
T 3gms_A 212 IGADAAIDSIGG 223 (340)
T ss_dssp SCEEEEEESSCH
T ss_pred CCCcEEEECCCC
Confidence 578999999985
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0036 Score=62.40 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=53.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+.+|||+|+ |.||..+++.+...|++|+++++..+ ........ -+... ..|..+.+.+.++.. ++|+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~----~~~~~~~~----lGa~~-v~~~~~~~~~~~~~~--~~D~ 254 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPS----KKEEALKN----FGADS-FLVSRDQEQMQAAAG--TLDG 254 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGG----GHHHHHHT----SCCSE-EEETTCHHHHHHTTT--CEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHh----cCCce-EEeccCHHHHHHhhC--CCCE
Confidence 6789999996 99999999999999999999997442 11111111 12222 246777777777665 4699
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
||+++|.
T Consensus 255 vid~~g~ 261 (366)
T 1yqd_A 255 IIDTVSA 261 (366)
T ss_dssp EEECCSS
T ss_pred EEECCCc
Confidence 9999985
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0098 Score=56.07 Aligned_cols=111 Identities=20% Similarity=0.233 Sum_probs=67.4
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHHhhhc--CCce--EEEEe
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQKLLQ--KHQV--FIVEG 177 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~~~~~--~~~v--~~~~~ 177 (476)
.+.+|+|.|+ |.+|.++++.|+..|. +++++|++.-.. -..+.....+.+. .+.+ +.+..
T Consensus 27 ~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~ 105 (251)
T 1zud_1 27 LDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQ 105 (251)
T ss_dssp HTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence 4579999997 7799999999999997 677776543110 0111222122111 2344 44443
Q ss_pred ecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 178 Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
++ +.+.+.+++++. |+||++... ...-..+.++|.+.+.. +|+.+..+.+|
T Consensus 106 ~~-~~~~~~~~~~~~--DvVi~~~d~-----------------~~~r~~l~~~~~~~~~p--~i~~~~~g~~G 156 (251)
T 1zud_1 106 RL-TGEALKDAVARA--DVVLDCTDN-----------------MATRQEINAACVALNTP--LITASAVGFGG 156 (251)
T ss_dssp CC-CHHHHHHHHHHC--SEEEECCSS-----------------HHHHHHHHHHHHHTTCC--EEEEEEEBTEE
T ss_pred cC-CHHHHHHHHhcC--CEEEECCCC-----------------HHHHHHHHHHHHHhCCC--EEEEeccccce
Confidence 44 345677888877 999998632 22223566778887764 77766554443
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0097 Score=58.73 Aligned_cols=94 Identities=22% Similarity=0.126 Sum_probs=56.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC---eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD---GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~---~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
.|+|+|.||+|.+|+.+++.|.++++ +++.+......... ..-.+..+...|+ |++ .++++
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~---------~~~~g~~i~~~~~-~~~----~~~~~-- 69 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR---------MGFAESSLRVGDV-DSF----DFSSV-- 69 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE---------EEETTEEEECEEG-GGC----CGGGC--
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCc---------cccCCcceEEecC-CHH----HhcCC--
Confidence 47899999999999999999997765 45555421110000 0001112211222 121 24555
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
|+||.+.+.. .+..+++.+.++|. ++|-+|+..
T Consensus 70 DvV~~a~g~~------------------~s~~~a~~~~~aG~--kvId~Sa~~ 102 (340)
T 2hjs_A 70 GLAFFAAAAE------------------VSRAHAERARAAGC--SVIDLSGAL 102 (340)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEETTCTT
T ss_pred CEEEEcCCcH------------------HHHHHHHHHHHCCC--EEEEeCCCC
Confidence 9999998741 13466777778886 578778754
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.014 Score=57.21 Aligned_cols=115 Identities=14% Similarity=0.132 Sum_probs=70.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHh--hh-cCCceEEEEeecCCHHHHHHhhccCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQK--LL-QKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~--~~-~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.|+|.|+|| |.+|..++..|+..|+ +|++.+++.+..+......... .. ...++... .| + +.++++
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d------~-~al~~a- 83 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NN------Y-EYLQNS- 83 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SC------G-GGGTTC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CC------H-HHHCCC-
Confidence 369999998 9999999999999998 9999999765333211111111 11 11122211 22 2 356777
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||-.++...- .. ....+....|+.-...+++.+.+......++.+|-
T Consensus 84 -D~VI~avg~p~k-~g-~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 84 -DVVIITAGVPRK-PN-MTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp -SEEEECCSCCCC-TT-CCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred -CEEEEcCCCCCC-CC-CchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999999975221 11 11223456688888888888777654434555543
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0066 Score=60.00 Aligned_cols=77 Identities=8% Similarity=-0.055 Sum_probs=51.4
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVVP 193 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~~ 193 (476)
.+++|+|+||+|.||...++.+...|++|++++++.+. ....+ .. +... ..|..+.+ .+.++..+.+
T Consensus 164 g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~----~~~~~-~~----Ga~~-~~~~~~~~~~~~v~~~~~~~g 233 (349)
T 3pi7_A 164 GEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQ----IALLK-DI----GAAH-VLNEKAPDFEATLREVMKAEQ 233 (349)
T ss_dssp CCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGG----HHHHH-HH----TCSE-EEETTSTTHHHHHHHHHHHHC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHH-Hc----CCCE-EEECCcHHHHHHHHHHhcCCC
Confidence 34799999999999999999999999999999985432 11111 11 2211 23444433 3444444346
Q ss_pred ccEEEEcccc
Q 011841 194 FTHVLHLAAQ 203 (476)
Q Consensus 194 ~d~Vi~~Ag~ 203 (476)
+|+||+++|.
T Consensus 234 ~D~vid~~g~ 243 (349)
T 3pi7_A 234 PRIFLDAVTG 243 (349)
T ss_dssp CCEEEESSCH
T ss_pred CcEEEECCCC
Confidence 7999999985
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0036 Score=60.19 Aligned_cols=79 Identities=18% Similarity=0.095 Sum_probs=51.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..+++|+|+|+ |.+|+.++..|++.|. +|++++|..+..+...+..... ..++.+...++. ++.+.+.++
T Consensus 125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~---~~~~~i~~~~~~---~l~~~l~~~-- 195 (283)
T 3jyo_A 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNA---VGREAVVGVDAR---GIEDVIAAA-- 195 (283)
T ss_dssp CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH---HTSCCEEEECST---THHHHHHHS--
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhh---cCCceEEEcCHH---HHHHHHhcC--
Confidence 57889999998 9999999999999998 6999998543211111111110 113334444443 355666666
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+|||+...
T Consensus 196 DiVInaTp~ 204 (283)
T 3jyo_A 196 DGVVNATPM 204 (283)
T ss_dssp SEEEECSST
T ss_pred CEEEECCCC
Confidence 999998754
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0047 Score=60.99 Aligned_cols=75 Identities=21% Similarity=0.182 Sum_probs=50.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH---HHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---PLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~~~ 192 (476)
..+.+|||+||+|.||..+++.+...|++|+++ ++.+ ... ....-+... .| .+. +.+.+...+.
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~----~~~-----~~~~lGa~~--i~-~~~~~~~~~~~~~~~~ 215 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGS----DLE-----YVRDLGATP--ID-ASREPEDYAAEHTAGQ 215 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHH----HHH-----HHHHHTSEE--EE-TTSCHHHHHHHHHTTS
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHH----HHH-----HHHHcCCCE--ec-cCCCHHHHHHHHhcCC
Confidence 467899999999999999999999999999998 4221 111 111123443 34 322 3344444555
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||+++|.
T Consensus 216 g~D~vid~~g~ 226 (343)
T 3gaz_A 216 GFDLVYDTLGG 226 (343)
T ss_dssp CEEEEEESSCT
T ss_pred CceEEEECCCc
Confidence 78999999984
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.015 Score=56.49 Aligned_cols=116 Identities=18% Similarity=0.132 Sum_probs=69.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
+.|+|.|+|+ |.+|..++..|+..|+ +|++++|+.+..+.. ......... ...+.+... .|. +.++++
T Consensus 6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~----~~~~~a- 76 (319)
T 1lld_A 6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAE-VLDMQHGSSFYPTVSIDGS--DDP----EICRDA- 76 (319)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHH-HHHHHHTGGGSTTCEEEEE--SCG----GGGTTC-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHH-HHHHHhhhhhcCCeEEEeC--CCH----HHhCCC-
Confidence 4579999998 9999999999999999 999999853211100 000011111 112232222 122 234555
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|+||-+++.... ......+.+..|+.....+++.+.+.+....+|.++
T Consensus 77 -D~Vii~v~~~~~--~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~ 124 (319)
T 1lld_A 77 -DMVVITAGPRQK--PGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 124 (319)
T ss_dssp -SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred -CEEEECCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence 999999975322 123445677788888888888877655432444443
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=63.65 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
..+++|+|||+ |.+|+.+++.|++.| +|++++|..
T Consensus 126 l~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~~ 160 (287)
T 1nvt_A 126 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTV 160 (287)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred cCCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECCH
Confidence 46789999998 599999999999999 999999853
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.013 Score=60.07 Aligned_cols=94 Identities=12% Similarity=0.120 Sum_probs=63.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC-C---eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH---HHHHHhhcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG-D---GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---PLLTKLFDV 191 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G-~---~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~~ 191 (476)
++|+|.| .|.||+.+++.|++++ . +|++++......+ .. . ..++.+...++++. +.+.+++++
T Consensus 14 ~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~--~~---~----~~g~~~~~~~Vdadnv~~~l~aLl~~ 83 (480)
T 2ph5_A 14 NRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVD--VA---Q----QYGVSFKLQQITPQNYLEVIGSTLEE 83 (480)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCC--HH---H----HHTCEEEECCCCTTTHHHHTGGGCCT
T ss_pred CCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhhh--HH---h----hcCCceeEEeccchhHHHHHHHHhcC
Confidence 5799999 5999999999999974 4 7898886554321 11 1 11456666666443 446678876
Q ss_pred CCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
. |+|||++-... ...++++|.++|+ ++|-++
T Consensus 84 ~--DvVIN~s~~~~------------------~l~Im~acleaGv--~YlDTa 114 (480)
T 2ph5_A 84 N--DFLIDVSIGIS------------------SLALIILCNQKGA--LYINAA 114 (480)
T ss_dssp T--CEEEECCSSSC------------------HHHHHHHHHHHTC--EEEESS
T ss_pred C--CEEEECCcccc------------------CHHHHHHHHHcCC--CEEECC
Confidence 3 99998663321 3478999999997 455443
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0088 Score=57.88 Aligned_cols=75 Identities=9% Similarity=-0.024 Sum_probs=50.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..+++|+|+|+ |.+|+.++..|++.|. +|++.+|..+ ..+...+..... .. +..+.+++.+.+.++
T Consensus 139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~-----ka~~la~~~~~~-~~----~~~~~~~~~~~~~~a-- 205 (297)
T 2egg_A 139 LDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVE-----KAERLVREGDER-RS----AYFSLAEAETRLAEY-- 205 (297)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHH-----HHHHHHHHSCSS-SC----CEECHHHHHHTGGGC--
T ss_pred CCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHhhhc-cC----ceeeHHHHHhhhccC--
Confidence 46789999997 8899999999999998 9999998432 111111111110 00 122335566777766
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||++.+.
T Consensus 206 DivIn~t~~ 214 (297)
T 2egg_A 206 DIIINTTSV 214 (297)
T ss_dssp SEEEECSCT
T ss_pred CEEEECCCC
Confidence 999999976
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.002 Score=55.05 Aligned_cols=71 Identities=15% Similarity=0.096 Sum_probs=48.0
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+++|+|+|+ |.+|+.+++.|.+.|++|++.+|..+. .+...... ++... +.. ++.++++++ |+|
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~-----~~~~a~~~---~~~~~--~~~---~~~~~~~~~--Div 84 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDH-----VRAFAEKY---EYEYV--LIN---DIDSLIKNN--DVI 84 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHH-----HHHHHHHH---TCEEE--ECS---CHHHHHHTC--SEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHH-----HHHHHHHh---CCceE--eec---CHHHHhcCC--CEE
Confidence 789999996 999999999999999999999984321 11111111 22222 222 345566666 999
Q ss_pred EEccccC
Q 011841 198 LHLAAQA 204 (476)
Q Consensus 198 i~~Ag~~ 204 (476)
|.+.+..
T Consensus 85 i~at~~~ 91 (144)
T 3oj0_A 85 ITATSSK 91 (144)
T ss_dssp EECSCCS
T ss_pred EEeCCCC
Confidence 9998753
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.44 E-value=0.037 Score=53.57 Aligned_cols=112 Identities=21% Similarity=0.232 Sum_probs=73.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..++|.|+|| |.+|..++..|+.+|. +|++.+++.+....... . .. ...+++... .| + +.++++
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~d-l-~~-~~~~~i~~t-~d------~-~~l~~a-- 78 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMD-L-EI-FNLPNVEIS-KD------L-SASAHS-- 78 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHH-H-HH-HTCTTEEEE-SC------G-GGGTTC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHH-H-hh-hcCCCeEEe-CC------H-HHHCCC--
Confidence 3479999997 9999999999999998 99999997652112211 1 11 222345442 23 2 347777
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||-.+|... ......+.+..|+.-...+++.+.+......|+.+|-
T Consensus 79 D~Vi~aag~~~---pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 79 KVVIFTVNSLG---SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp SEEEECCCC-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred CEEEEcCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 99999998731 2234556788899889999998887665545666664
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0025 Score=61.65 Aligned_cols=74 Identities=19% Similarity=0.146 Sum_probs=50.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-HHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~~~ 194 (476)
..+.+|||+||+|.+|..+++.+...|++|++++++.+..+ ... .. +... ..|..+ .+..+. +. ++
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~----~~~-~~----ga~~-~~~~~~~~~~~~~-~~--~~ 190 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA----LPL-AL----GAEE-AATYAEVPERAKA-WG--GL 190 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH----HHH-HT----TCSE-EEEGGGHHHHHHH-TT--SE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH----HHH-hc----CCCE-EEECCcchhHHHH-hc--Cc
Confidence 46789999999999999999999999999999998544221 111 11 2222 246555 433333 34 45
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||+ +|.
T Consensus 191 d~vid-~g~ 198 (302)
T 1iz0_A 191 DLVLE-VRG 198 (302)
T ss_dssp EEEEE-CSC
T ss_pred eEEEE-CCH
Confidence 99999 875
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.024 Score=55.93 Aligned_cols=77 Identities=18% Similarity=0.080 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC----HHHHHHhhc-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND----APLLTKLFD- 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~l~~~~~- 190 (476)
..+.+|||+|+ |.||...++.+...|++|++++++.+ ..+... .-+... ..|..+ .+.+.+...
T Consensus 167 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~-----~~~~~~----~lGa~~-~~~~~~~~~~~~~i~~~~~~ 235 (352)
T 1e3j_A 167 QLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPR-----RLEVAK----NCGADV-TLVVDPAKEEESSIIERIRS 235 (352)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHH----HTTCSE-EEECCTTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHH-----HHHHHH----HhCCCE-EEcCcccccHHHHHHHHhcc
Confidence 45789999997 99999999999999999999887321 111111 112221 234443 334555443
Q ss_pred --cCCccEEEEcccc
Q 011841 191 --VVPFTHVLHLAAQ 203 (476)
Q Consensus 191 --~~~~d~Vi~~Ag~ 203 (476)
+.++|+||+++|.
T Consensus 236 ~~g~g~D~vid~~g~ 250 (352)
T 1e3j_A 236 AIGDLPNVTIDCSGN 250 (352)
T ss_dssp HSSSCCSEEEECSCC
T ss_pred ccCCCCCEEEECCCC
Confidence 3457999999985
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0075 Score=55.37 Aligned_cols=67 Identities=12% Similarity=0.024 Sum_probs=46.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+|+|.|+| .|.+|..+++.|.+.|++|++.+|+.+ ..+.....++... ++.++++++ |+
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~---------~~~~~~~~g~~~~--------~~~~~~~~~--Dv 86 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPK---------RTARLFPSAAQVT--------FQEEAVSSP--EV 86 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHH---------HHHHHSBTTSEEE--------EHHHHTTSC--SE
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHH---------HHHHHHHcCCcee--------cHHHHHhCC--CE
Confidence 457899999 699999999999999999999998321 1111222244432 244566666 99
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
||.+...
T Consensus 87 Vi~av~~ 93 (215)
T 2vns_A 87 IFVAVFR 93 (215)
T ss_dssp EEECSCG
T ss_pred EEECCCh
Confidence 9988753
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0049 Score=60.83 Aligned_cols=76 Identities=20% Similarity=0.224 Sum_probs=50.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-HHHHHHhhccCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVP 193 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~~ 193 (476)
.+.+|||+|| |.||...++.+... |.+|++++++.+ ..+.... + +...+ .|..+ .+.+.++-++.+
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~-----~~~~~~~-l---Ga~~v-i~~~~~~~~~~~~~~g~g 238 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKK-----HRDFALE-L---GADYV-SEMKDAESLINKLTDGLG 238 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHH-----HHHHHHH-H---TCSEE-ECHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHH-----HHHHHHH-h---CCCEE-eccccchHHHHHhhcCCC
Confidence 5789999999 99999999999999 999999987322 1111111 1 22111 24333 334444444446
Q ss_pred ccEEEEcccc
Q 011841 194 FTHVLHLAAQ 203 (476)
Q Consensus 194 ~d~Vi~~Ag~ 203 (476)
+|+||+++|.
T Consensus 239 ~D~vid~~g~ 248 (344)
T 2h6e_A 239 ASIAIDLVGT 248 (344)
T ss_dssp EEEEEESSCC
T ss_pred ccEEEECCCC
Confidence 7999999985
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.004 Score=62.07 Aligned_cols=74 Identities=15% Similarity=0.138 Sum_probs=49.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC--HHHHHHhhccCCcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVVPFT 195 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~~~~~~d 195 (476)
+.+|||+|| |.||..+++.+...|++|+++++... ..+... ... .-+...+ | .+ .+.+.+ .. .++|
T Consensus 181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~-~~~~~~-~~~----~~ga~~v--~-~~~~~~~~~~-~~-~~~d 248 (366)
T 2cdc_A 181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREP-TEVEQT-VIE----ETKTNYY--N-SSNGYDKLKD-SV-GKFD 248 (366)
T ss_dssp TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCC-CHHHHH-HHH----HHTCEEE--E-CTTCSHHHHH-HH-CCEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCcc-chHHHH-HHH----HhCCcee--c-hHHHHHHHHH-hC-CCCC
Confidence 789999999 99999999999999999999998541 001111 111 1144444 5 44 123333 22 3579
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+||+++|.
T Consensus 249 ~vid~~g~ 256 (366)
T 2cdc_A 249 VIIDATGA 256 (366)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99999985
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.013 Score=58.43 Aligned_cols=77 Identities=22% Similarity=0.229 Sum_probs=51.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+.+|||+||+|.||..+++.+...|.+|+++++. + ..... .. + +... ..|..+.+..+++.+..++|
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~-~----~~~~~-~~-l---Ga~~-v~~~~~~~~~~~~~~~~g~D 250 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQ-D----ASELV-RK-L---GADD-VIDYKSGSVEEQLKSLKPFD 250 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECG-G----GHHHH-HH-T---TCSE-EEETTSSCHHHHHHTSCCBS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCh-H----HHHHH-HH-c---CCCE-EEECCchHHHHHHhhcCCCC
Confidence 467899999999999999999999999999988741 1 12211 11 1 2221 23555544444444334679
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+||+++|.
T Consensus 251 ~vid~~g~ 258 (375)
T 2vn8_A 251 FILDNVGG 258 (375)
T ss_dssp EEEESSCT
T ss_pred EEEECCCC
Confidence 99999985
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0079 Score=59.84 Aligned_cols=100 Identities=14% Similarity=0.082 Sum_probs=59.9
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
+.++|.|.||+|.+|+.+++.|.++.. +|+.+.+..+.. ..... .+..-.+.. ..|+.-.+ ++.++++ |
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g-~~~~~---~~~~~~~~v--~~dl~~~~--~~~~~~v--D 84 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG-QSMES---VFPHLRAQK--LPTLVSVK--DADFSTV--D 84 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT-SCHHH---HCGGGTTSC--CCCCBCGG--GCCGGGC--S
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC-CCHHH---hCchhcCcc--cccceecc--hhHhcCC--C
Confidence 346999999999999999999998764 788776543221 11111 111111110 13332222 3455555 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
+||.+++... +...+..+ +.|. ++|-.|+..
T Consensus 85 vVf~atp~~~------------------s~~~a~~~-~aG~--~VId~sa~~ 115 (359)
T 1xyg_A 85 AVFCCLPHGT------------------TQEIIKEL-PTAL--KIVDLSADF 115 (359)
T ss_dssp EEEECCCTTT------------------HHHHHHTS-CTTC--EEEECSSTT
T ss_pred EEEEcCCchh------------------HHHHHHHH-hCCC--EEEECCccc
Confidence 9999987522 23555666 6665 688888743
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.019 Score=53.84 Aligned_cols=32 Identities=28% Similarity=0.185 Sum_probs=28.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHC-CCeEEEEeC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDN 150 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R 150 (476)
|+|.|+|++|.+|+.+++.+.+. |++|++...
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d 33 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELD 33 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEc
Confidence 58999999999999999999876 899887764
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0045 Score=62.07 Aligned_cols=76 Identities=18% Similarity=0.125 Sum_probs=53.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+++|+|+|+ |.||..+++.+...|.+|++.+|..+ ..... ..... ..+ ..+..+.+.+.+++.++ |
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~----~l~~~-~~~~g-~~~---~~~~~~~~~l~~~l~~a--D 233 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINID----KLRQL-DAEFC-GRI---HTRYSSAYELEGAVKRA--D 233 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHH-HHHTT-TSS---EEEECCHHHHHHHHHHC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHH----HHHHH-HHhcC-Cee---EeccCCHHHHHHHHcCC--C
Confidence 46789999998 99999999999999999999998332 11111 11111 122 23445566788888877 9
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+||++++.
T Consensus 234 vVi~~~~~ 241 (377)
T 2vhw_A 234 LVIGAVLV 241 (377)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99998875
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.015 Score=57.29 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=49.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~ 192 (476)
.+.+|||+|| |.||..+++.+...|+ +|++++++.+ +.+....- .. ...|..+.+ .+.++. +.
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~---------~~~~~~~l-a~-~v~~~~~~~~~~~~~~~~-~~ 230 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPY---------RLAFARPY-AD-RLVNPLEEDLLEVVRRVT-GS 230 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHH---------HHGGGTTT-CS-EEECTTTSCHHHHHHHHH-SS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH---------HHHHHHHh-HH-hccCcCccCHHHHHHHhc-CC
Confidence 6779999999 9999999999999999 9999997321 12222211 11 123544422 233333 44
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||+++|.
T Consensus 231 g~D~vid~~g~ 241 (343)
T 2dq4_A 231 GVEVLLEFSGN 241 (343)
T ss_dssp CEEEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 67999999984
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0069 Score=60.06 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=59.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCC-----C-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRG-----D-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G-----~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
+|+|.|.||||++|+.|++.|++++ + +|+.+.+..+.... .......+.....+.+ .|+ |.+. +.+
T Consensus 9 m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~-~~~~~~~l~~~~~~~~--~~~-~~~~----~~~ 80 (352)
T 2nqt_A 9 ATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGST-LGEHHPHLTPLAHRVV--EPT-EAAV----LGG 80 (352)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSB-GGGTCTTCGGGTTCBC--EEC-CHHH----HTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCc-hhhhcccccccceeee--ccC-CHHH----hcC
Confidence 4799999999999999999999987 4 67777643221111 0000000000012222 233 2322 445
Q ss_pred CCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
+ |+||.+.+... +..+++.+ +.|. ++|-+|+..
T Consensus 81 ~--DvVf~alg~~~------------------s~~~~~~~-~~G~--~vIDlSa~~ 113 (352)
T 2nqt_A 81 H--DAVFLALPHGH------------------SAVLAQQL-SPET--LIIDCGADF 113 (352)
T ss_dssp C--SEEEECCTTSC------------------CHHHHHHS-CTTS--EEEECSSTT
T ss_pred C--CEEEECCCCcc------------------hHHHHHHH-hCCC--EEEEECCCc
Confidence 5 99999987632 24566777 7774 799998865
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.015 Score=57.64 Aligned_cols=108 Identities=19% Similarity=0.118 Sum_probs=67.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHH----hhhcCCceEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQ----KLLQKHQVFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~----~~~~~~~v~~~~ 176 (476)
..+.+|+|.|+ |.+|.++++.|+..|. +++++|++.-.. -..+..... .....-.++.+.
T Consensus 116 L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 194 (353)
T 3h5n_A 116 LKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIA 194 (353)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEE
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEee
Confidence 34679999997 9999999999999996 688888653110 011111111 111223566677
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
.++.+...+.. ++++ |+||++...... .-..+-++|.+.+++ +|+.+.
T Consensus 195 ~~i~~~~~~~~-~~~~--DlVvd~~Dn~~~----------------~r~~ln~~c~~~~~p--~i~~~~ 242 (353)
T 3h5n_A 195 LNINDYTDLHK-VPEA--DIWVVSADHPFN----------------LINWVNKYCVRANQP--YINAGY 242 (353)
T ss_dssp CCCCSGGGGGG-SCCC--SEEEECCCCSTT----------------HHHHHHHHHHHTTCC--EEEEEE
T ss_pred cccCchhhhhH-hccC--CEEEEecCChHH----------------HHHHHHHHHHHhCCC--EEEEEE
Confidence 77776654555 6655 999997632110 123455788888874 776654
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.021 Score=55.42 Aligned_cols=112 Identities=14% Similarity=0.057 Sum_probs=67.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhh-----cCCceEEEEeecCCHHHHHHhhcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLL-----QKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~-----~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
|+|.|+| .|.+|..++..|++.| ++|++.+|+.+.. ........ ....+.+... |. +.+++
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~---d~----~~~~~ 69 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKV----KADQIDFQDAMANLEAHGNIVIN---DW----AALAD 69 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHH----HHHHHHHHHHGGGSSSCCEEEES---CG----GGGTT
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHH----HHHHHHHHhhhhhcCCCeEEEeC---CH----HHhCC
Confidence 6899999 5999999999999999 8999999854321 11111110 1112333322 32 34566
Q ss_pred CCccEEEEccccCCh--hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 192 VPFTHVLHLAAQAGV--RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~--~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
+ |+||-+++.... +.......+....|+.....+++.+.+......+|.+|
T Consensus 70 a--DvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 70 A--DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp C--SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred C--CEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 6 999999875221 00111222356678888888888887765443555544
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0084 Score=59.44 Aligned_cols=74 Identities=15% Similarity=0.234 Sum_probs=49.6
Q ss_pred CEEEEECCCChhhHHH-HHHH-HHCCCe-EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH--HHHHhhccCC
Q 011841 119 MTVLVTGAAGFVGSHC-SLAL-KKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP--LLTKLFDVVP 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l-~~~L-~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~--~l~~~~~~~~ 193 (476)
.+|||+|| |.||... ++.+ ...|.+ |+++++..+. +...... ..-+...+ |..+.+ .+.++ .+ +
T Consensus 174 ~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~-~~~~~~~-----~~lGa~~v--~~~~~~~~~i~~~-~g-g 242 (357)
T 2b5w_A 174 SSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRP-DPTIDII-----EELDATYV--DSRQTPVEDVPDV-YE-Q 242 (357)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSS-CHHHHHH-----HHTTCEEE--ETTTSCGGGHHHH-SC-C
T ss_pred CEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCccc-HHHHHHH-----HHcCCccc--CCCccCHHHHHHh-CC-C
Confidence 79999999 9999999 8888 778997 9999985430 0011111 12255555 655422 25555 45 7
Q ss_pred ccEEEEcccc
Q 011841 194 FTHVLHLAAQ 203 (476)
Q Consensus 194 ~d~Vi~~Ag~ 203 (476)
+|+||+++|.
T Consensus 243 ~Dvvid~~g~ 252 (357)
T 2b5w_A 243 MDFIYEATGF 252 (357)
T ss_dssp EEEEEECSCC
T ss_pred CCEEEECCCC
Confidence 8999999985
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.05 Score=53.82 Aligned_cols=80 Identities=19% Similarity=0.135 Sum_probs=52.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH----HHHhhc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL----LTKLFD 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~----l~~~~~ 190 (476)
..+.+|||+|+ |.||...++.+...|.+ |++++++.+ ....... + ...+.....|-.+.+. +.++..
T Consensus 178 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~~~a~~-l-~~~~~~~~~~~~~~~~~~~~v~~~t~ 249 (363)
T 3m6i_A 178 RLGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEG-----RLKFAKE-I-CPEVVTHKVERLSAEESAKKIVESFG 249 (363)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHH-----HHHHHHH-H-CTTCEEEECCSCCHHHHHHHHHHHTS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHH-h-chhcccccccccchHHHHHHHHHHhC
Confidence 45679999998 99999999999999997 888886332 1112222 2 2244444444333333 333444
Q ss_pred cCCccEEEEcccc
Q 011841 191 VVPFTHVLHLAAQ 203 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~ 203 (476)
+.++|+||+++|.
T Consensus 250 g~g~Dvvid~~g~ 262 (363)
T 3m6i_A 250 GIEPAVALECTGV 262 (363)
T ss_dssp SCCCSEEEECSCC
T ss_pred CCCCCEEEECCCC
Confidence 5568999999985
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.019 Score=57.00 Aligned_cols=78 Identities=21% Similarity=0.083 Sum_probs=51.3
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC--C-HHHHHHhhcc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN--D-APLLTKLFDV 191 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d-~~~l~~~~~~ 191 (476)
...+.+|||+| +|.||...++.+...|++|+++++..+ ... .... + +...+ .|-. | .+.+.++..+
T Consensus 187 ~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~----~~~-~~~~-l---Ga~~v-i~~~~~~~~~~v~~~~~g 255 (363)
T 3uog_A 187 LRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSRE----KLD-RAFA-L---GADHG-INRLEEDWVERVYALTGD 255 (363)
T ss_dssp CCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHH----HHH-HHHH-H---TCSEE-EETTTSCHHHHHHHHHTT
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCch----hHH-HHHH-c---CCCEE-EcCCcccHHHHHHHHhCC
Confidence 34678999999 799999999999999999999997322 111 1111 1 22211 2311 2 2345555555
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
.++|+||+++|.
T Consensus 256 ~g~D~vid~~g~ 267 (363)
T 3uog_A 256 RGADHILEIAGG 267 (363)
T ss_dssp CCEEEEEEETTS
T ss_pred CCceEEEECCCh
Confidence 578999999984
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0073 Score=59.77 Aligned_cols=98 Identities=13% Similarity=0.116 Sum_probs=58.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
++++|.|.||+|+||+.+++.|.+++. +|+.+.+..+...+. .... ..+. +. ....+.+.+ + +.++ |
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~-~~~~-~~~~--g~--~~~~~~~~~---~-~~~v--D 70 (345)
T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPV-HFVH-PNLR--GR--TNLKFVPPE---K-LEPA--D 70 (345)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBG-GGTC-GGGT--TT--CCCBCBCGG---G-CCCC--S
T ss_pred CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchh-HHhC-chhc--Cc--ccccccchh---H-hcCC--C
Confidence 347999999999999999999998764 777776633221110 0000 0000 10 011122322 2 4555 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCc
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSS 246 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~ 246 (476)
+|+.+++... ...++..+.++|. ++|-.|+.
T Consensus 71 vV~~a~g~~~------------------s~~~a~~~~~aG~--~VId~Sa~ 101 (345)
T 2ozp_A 71 ILVLALPHGV------------------FAREFDRYSALAP--VLVDLSAD 101 (345)
T ss_dssp EEEECCCTTH------------------HHHTHHHHHTTCS--EEEECSST
T ss_pred EEEEcCCcHH------------------HHHHHHHHHHCCC--EEEEcCcc
Confidence 9999987521 3456666777785 68888875
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.031 Score=54.25 Aligned_cols=115 Identities=17% Similarity=0.107 Sum_probs=74.3
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+|.|+|| |.+|..++..|+..|. +|++.+++.+............. .....+.+... .|. +.++++ |+|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~----~a~~~a--D~V 71 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS--NSY----EDMRGS--DIV 71 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE--SCG----GGGTTC--SEE
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC--CCH----HHhCCC--CEE
Confidence 4889998 9999999999998887 79999986543321111111110 01123333331 222 357777 999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|..++...- ......+.+..|+.-...+++.+.+......+|.+|-
T Consensus 72 i~~ag~~~k--~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 72 LVTAGIGRK--PGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp EECCSCCCC--SSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 999987331 1234456788899999999999888765546777654
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.016 Score=55.29 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
..+++|+|+|+ |.+|+.++..|++.|++|++.+|..
T Consensus 117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~ 152 (272)
T 1p77_A 117 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTF 152 (272)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46789999998 8899999999999999999999943
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.014 Score=55.68 Aligned_cols=35 Identities=23% Similarity=0.354 Sum_probs=29.0
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHC-CCeEEEE-eCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGL-DNF 151 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~-~R~ 151 (476)
++++|.|+||+|.+|+.+++.+.+. +++++++ +|.
T Consensus 6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~ 42 (272)
T 4f3y_A 6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRT 42 (272)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCT
T ss_pred cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 4579999999999999999999876 6677774 554
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.06 Score=55.32 Aligned_cols=98 Identities=17% Similarity=0.210 Sum_probs=68.9
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d 195 (476)
..++|+|.|| |-||.++++.|. ++++|.++.++. ...+...+. -++..++.||-+|.+.+.+. ++.+ |
T Consensus 234 ~~~~v~I~Gg-G~ig~~lA~~L~-~~~~v~iIE~d~-----~r~~~la~~--l~~~~Vi~GD~td~~~L~ee~i~~~--D 302 (461)
T 4g65_A 234 PYRRIMIVGG-GNIGASLAKRLE-QTYSVKLIERNL-----QRAEKLSEE--LENTIVFCGDAADQELLTEENIDQV--D 302 (461)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHT-TTSEEEEEESCH-----HHHHHHHHH--CTTSEEEESCTTCHHHHHHTTGGGC--S
T ss_pred cccEEEEEcc-hHHHHHHHHHhh-hcCceEEEecCH-----HHHHHHHHH--CCCceEEeccccchhhHhhcCchhh--c
Confidence 4579999997 999999999984 569999998732 222222222 34788999999999987764 5656 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~ 243 (476)
++|-+.+. -+.|+. +...|++.|++ ++|-.
T Consensus 303 ~~ia~T~~-------------De~Ni~----~~llAk~~gv~-kvIa~ 332 (461)
T 4g65_A 303 VFIALTNE-------------DETNIM----SAMLAKRMGAK-KVMVL 332 (461)
T ss_dssp EEEECCSC-------------HHHHHH----HHHHHHHTTCS-EEEEE
T ss_pred EEEEcccC-------------cHHHHH----HHHHHHHcCCc-ccccc
Confidence 99977653 123553 34557889987 66644
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.012 Score=58.29 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=51.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH--HHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA--PLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~--~~l~~~~~~~ 192 (476)
..+.+|||+|| |.||...++.+... |.+|++++++.+ +.+....-+...+ .|..+. +.+.++-.+.
T Consensus 185 ~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~---------~~~~~~~lGa~~v-i~~~~~~~~~v~~~~~g~ 253 (359)
T 1h2b_A 185 YPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEE---------KLKLAERLGADHV-VDARRDPVKQVMELTRGR 253 (359)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHH---------HHHHHHHTTCSEE-EETTSCHHHHHHHHTTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHH---------HHHHHHHhCCCEE-EeccchHHHHHHHHhCCC
Confidence 46789999999 99999999999998 999999997321 1111111233222 355544 3444444444
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||+++|.
T Consensus 254 g~Dvvid~~G~ 264 (359)
T 1h2b_A 254 GVNVAMDFVGS 264 (359)
T ss_dssp CEEEEEESSCC
T ss_pred CCcEEEECCCC
Confidence 67999999985
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.024 Score=56.36 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=48.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHH-CCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC--HHHHHHhhccCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--APLLTKLFDVVP 193 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~-~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~~~~~ 193 (476)
.+.+|||+||+|.||...++.+.. .|.+|+++++..+ +.+....-+...+ .|..+ .+.+.++ .+.+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~---------~~~~~~~lGad~v-i~~~~~~~~~v~~~-~~~g 239 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPE---------TQEWVKSLGAHHV-IDHSKPLAAEVAAL-GLGA 239 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHH---------HHHHHHHTTCSEE-ECTTSCHHHHHHTT-CSCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHH---------HHHHHHHcCCCEE-EeCCCCHHHHHHHh-cCCC
Confidence 567999999999999999988877 6899999987322 1111111232222 23332 2233333 3346
Q ss_pred ccEEEEcccc
Q 011841 194 FTHVLHLAAQ 203 (476)
Q Consensus 194 ~d~Vi~~Ag~ 203 (476)
+|+||+++|.
T Consensus 240 ~Dvvid~~g~ 249 (363)
T 4dvj_A 240 PAFVFSTTHT 249 (363)
T ss_dssp EEEEEECSCH
T ss_pred ceEEEECCCc
Confidence 7999999874
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.038 Score=53.89 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=47.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
...|+|.|.|. |.+|..+++.|++.|++|++.+|+.+ ..+.+...++... .++.++++++ |
T Consensus 29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~---------~~~~l~~~g~~~~-------~~~~e~~~~a--D 89 (320)
T 4dll_A 29 PYARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPA---------RAASLAALGATIH-------EQARAAARDA--D 89 (320)
T ss_dssp CCCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHH---------HHHHHHTTTCEEE-------SSHHHHHTTC--S
T ss_pred cCCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHH---------HHHHHHHCCCEee-------CCHHHHHhcC--C
Confidence 45689999986 99999999999999999999998432 1111122244321 2345566666 9
Q ss_pred EEEEccc
Q 011841 196 HVLHLAA 202 (476)
Q Consensus 196 ~Vi~~Ag 202 (476)
+||-+..
T Consensus 90 vVi~~vp 96 (320)
T 4dll_A 90 IVVSMLE 96 (320)
T ss_dssp EEEECCS
T ss_pred EEEEECC
Confidence 9998764
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.97 E-value=0.12 Score=49.46 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=59.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.+.++|+|.|++|-.|+.+++.|++.|++++..+....... ...++.++ .+++++.+..++|
T Consensus 5 ~~~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~-----------~i~G~~vy-------~sl~el~~~~~~D 66 (288)
T 1oi7_A 5 NRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM-----------EVLGVPVY-------DTVKEAVAHHEVD 66 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC-----------EETTEEEE-------SSHHHHHHHSCCS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc-----------eECCEEee-------CCHHHHhhcCCCC
Confidence 35579999999999999999999999998654443211000 01133332 1244455533569
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
++|.+... ..+..+++.|.+.|++ .+|.+++
T Consensus 67 v~Ii~vp~------------------~~~~~~~~ea~~~Gi~-~vVi~t~ 97 (288)
T 1oi7_A 67 ASIIFVPA------------------PAAADAALEAAHAGIP-LIVLITE 97 (288)
T ss_dssp EEEECCCH------------------HHHHHHHHHHHHTTCS-EEEECCS
T ss_pred EEEEecCH------------------HHHHHHHHHHHHCCCC-EEEEECC
Confidence 99987632 2245778888888985 6776664
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.032 Score=54.82 Aligned_cols=103 Identities=13% Similarity=0.065 Sum_probs=59.8
Q ss_pred CCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCC--CCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNS--YYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~--~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
+++|.|.||||++|..+++.|.+. .+++..+..... ..-+........+.....+.+... .|.+ ++.+++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~--~~~~---~~~~~~-- 76 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPM--SDIS---EFSPGV-- 76 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEE--SSGG---GTCTTC--
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEecc--CCHH---HHhcCC--
Confidence 369999999999999999999985 568887765441 111111211111111112333322 0222 233555
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
|+|+-+.+.. .+..++..+.+.|. ++|=.|+..
T Consensus 77 Dvvf~a~p~~------------------~s~~~~~~~~~~g~--~vIDlSa~f 109 (337)
T 3dr3_A 77 DVVFLATAHE------------------VSHDLAPQFLEAGC--VVFDLSGAF 109 (337)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEECSSTT
T ss_pred CEEEECCChH------------------HHHHHHHHHHHCCC--EEEEcCCcc
Confidence 9999887641 13455566667776 688888853
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.03 Score=54.99 Aligned_cols=106 Identities=20% Similarity=0.111 Sum_probs=64.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHHhhhc--CCceEEEEee
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQKLLQ--KHQVFIVEGD 178 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~~~~~--~~~v~~~~~D 178 (476)
..+.+|+|.|+ |.+|.++++.|+..|. +++++++..-.. -..+.....+.+. .+.+++...+
T Consensus 32 L~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~ 110 (340)
T 3rui_A 32 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK 110 (340)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred HhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEe
Confidence 35679999997 9999999999999996 677777644110 0111111112111 3455544433
Q ss_pred --c--------------CCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q 011841 179 --L--------------NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVW 242 (476)
Q Consensus 179 --l--------------~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~ 242 (476)
+ .+.+.+.++++++ |+||++.-....+ ..+-++|.+.+. .+|.
T Consensus 111 ~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~--DlVvd~tDn~~tR-----------------~lin~~c~~~~~--plI~ 169 (340)
T 3rui_A 111 LSIPMIGHKLVNEEAQHKDFDRLRALIKEH--DIIFLLVDSRESR-----------------WLPSLLSNIENK--TVIN 169 (340)
T ss_dssp CCCCCTTSCCSCHHHHHHHHHHHHHHHHHC--SEEEECCSSTGGG-----------------HHHHHHHHHTTC--EEEE
T ss_pred ccccccCcccchhhhhcCCHHHHHhhhccC--CEEEecCCCHHHH-----------------HHHHHHHHHcCC--cEEE
Confidence 3 1334567788877 9999987542211 245567888876 3565
Q ss_pred e
Q 011841 243 A 243 (476)
Q Consensus 243 ~ 243 (476)
.
T Consensus 170 a 170 (340)
T 3rui_A 170 A 170 (340)
T ss_dssp E
T ss_pred e
Confidence 3
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.022 Score=56.91 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=50.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC---CHH---HHHHh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN---DAP---LLTKL 188 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~---d~~---~l~~~ 188 (476)
..+.+|||+| +|.||...++.+...| .+|++++++.+ +.+....-+...+ .|.. +.+ .+.++
T Consensus 194 ~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~---------~~~~~~~lGa~~v-i~~~~~~~~~~~~~v~~~ 262 (380)
T 1vj0_A 194 FAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPN---------RLKLAEEIGADLT-LNRRETSVEERRKAIMDI 262 (380)
T ss_dssp CBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHH---------HHHHHHHTTCSEE-EETTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHH---------HHHHHHHcCCcEE-EeccccCcchHHHHHHHH
Confidence 4578999999 7999999999999999 69999997332 1111111232221 3443 222 23344
Q ss_pred hccCCccEEEEcccc
Q 011841 189 FDVVPFTHVLHLAAQ 203 (476)
Q Consensus 189 ~~~~~~d~Vi~~Ag~ 203 (476)
..+.++|+||+++|.
T Consensus 263 ~~g~g~Dvvid~~g~ 277 (380)
T 1vj0_A 263 THGRGADFILEATGD 277 (380)
T ss_dssp TTTSCEEEEEECSSC
T ss_pred hCCCCCcEEEECCCC
Confidence 444467999999985
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.02 Score=57.02 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=48.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc----
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD---- 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~---- 190 (476)
..+.+|||+|+ |.+|...++.+...|+ +|+++++..+ ....... + +... ..|..+.+..+.+.+
T Consensus 181 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~~~a~~-l---Ga~~-vi~~~~~~~~~~i~~~~~~ 249 (370)
T 4ej6_A 181 KAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQAT-----KRRLAEE-V---GATA-TVDPSAGDVVEAIAGPVGL 249 (370)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHH-----HHHHHHH-H---TCSE-EECTTSSCHHHHHHSTTSS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHH-c---CCCE-EECCCCcCHHHHHHhhhhc
Confidence 45789999998 9999999999999999 7888876321 1111111 1 2221 235444333333322
Q ss_pred --cCCccEEEEcccc
Q 011841 191 --VVPFTHVLHLAAQ 203 (476)
Q Consensus 191 --~~~~d~Vi~~Ag~ 203 (476)
+ ++|+||+++|.
T Consensus 250 ~~g-g~Dvvid~~G~ 263 (370)
T 4ej6_A 250 VPG-GVDVVIECAGV 263 (370)
T ss_dssp STT-CEEEEEECSCC
T ss_pred cCC-CCCEEEECCCC
Confidence 3 67999999874
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.023 Score=57.12 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=52.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC----HHHHHHhhc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND----APLLTKLFD 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~l~~~~~ 190 (476)
..+.+|||+|+ |.||...++.+...|. +|++++++.+ +.+....-+..+ .|..+ .+.+.++..
T Consensus 184 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~---------~~~~a~~lGa~~--i~~~~~~~~~~~~~~~~~ 251 (398)
T 2dph_A 184 KPGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPE---------RLKLLSDAGFET--IDLRNSAPLRDQIDQILG 251 (398)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHH---------HHHHHHTTTCEE--EETTSSSCHHHHHHHHHS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH---------HHHHHHHcCCcE--EcCCCcchHHHHHHHHhC
Confidence 46789999997 9999999999988898 8999987321 112222335543 45544 334555555
Q ss_pred cCCccEEEEcccc
Q 011841 191 VVPFTHVLHLAAQ 203 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~ 203 (476)
+.++|+||+++|.
T Consensus 252 g~g~Dvvid~~g~ 264 (398)
T 2dph_A 252 KPEVDCGVDAVGF 264 (398)
T ss_dssp SSCEEEEEECSCT
T ss_pred CCCCCEEEECCCC
Confidence 5467999999985
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.065 Score=53.93 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=50.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH---HHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---PLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~~ 191 (476)
..+.+|||+|+ |.||...++.+...|. +|+++++..+ ........ +...+ .|..+. +.+.++..+
T Consensus 212 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~-----~~~~~~~l----Ga~~v-i~~~~~~~~~~i~~~t~g 280 (404)
T 3ip1_A 212 RPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEV-----RRNLAKEL----GADHV-IDPTKENFVEAVLDYTNG 280 (404)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHH-----HHHHHHHH----TCSEE-ECTTTSCHHHHHHHHTTT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH-----HHHHHHHc----CCCEE-EcCCCCCHHHHHHHHhCC
Confidence 46789999998 9999999999999999 8998886321 11111111 22211 244333 344455555
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
.++|+||+++|.
T Consensus 281 ~g~D~vid~~g~ 292 (404)
T 3ip1_A 281 LGAKLFLEATGV 292 (404)
T ss_dssp CCCSEEEECSSC
T ss_pred CCCCEEEECCCC
Confidence 568999999986
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.78 E-value=0.01 Score=58.02 Aligned_cols=73 Identities=29% Similarity=0.204 Sum_probs=46.4
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH--HHHHHhhccCCccEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA--PLLTKLFDVVPFTHV 197 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~--~~l~~~~~~~~~d~V 197 (476)
+|||+||+|.||...++.+...|++|+++++..+.. ...+ .. +...+ .|..+. +.+.++ .+.++|+|
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~----~~~~-~l----Ga~~~-i~~~~~~~~~~~~~-~~~~~d~v 220 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH----DYLR-VL----GAKEV-LAREDVMAERIRPL-DKQRWAAA 220 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH----HHHH-HT----TCSEE-EECC---------C-CSCCEEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----HHHH-Hc----CCcEE-EecCCcHHHHHHHh-cCCcccEE
Confidence 699999999999999999999999999999864421 2121 11 22211 344443 122222 23367999
Q ss_pred EEcccc
Q 011841 198 LHLAAQ 203 (476)
Q Consensus 198 i~~Ag~ 203 (476)
|+++|.
T Consensus 221 id~~g~ 226 (328)
T 1xa0_A 221 VDPVGG 226 (328)
T ss_dssp EECSTT
T ss_pred EECCcH
Confidence 999985
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.032 Score=54.86 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=57.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCC---CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRG---DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G---~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
+++|.|.||+|+||+.+++.|.+++ .+|+.+....+..... . .....+.+ .|+ |++ .++++
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~-~------~~~~~i~~--~~~-~~~----~~~~v-- 66 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTY-R------FNGKTVRV--QNV-EEF----DWSQV-- 66 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEE-E------ETTEEEEE--EEG-GGC----CGGGC--
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCce-e------ecCceeEE--ecC-ChH----HhcCC--
Confidence 4789999999999999999999974 4677666321110000 0 11112222 232 121 33555
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
|+||-+.+.. .+...+..+.+.|. ++|-.|+..
T Consensus 67 DvVf~a~g~~------------------~s~~~a~~~~~~G~--~vId~s~~~ 99 (336)
T 2r00_A 67 HIALFSAGGE------------------LSAKWAPIAAEAGV--VVIDNTSHF 99 (336)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEECSSTT
T ss_pred CEEEECCCch------------------HHHHHHHHHHHcCC--EEEEcCCcc
Confidence 9999998741 13456666777786 688888763
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.042 Score=54.29 Aligned_cols=111 Identities=16% Similarity=0.125 Sum_probs=68.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCC--------------CCCCchHHHHHHhhhc--CCc--eEEEE
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN--------------SYYDPSLKRARQKLLQ--KHQ--VFIVE 176 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~--------------~~~~~~~~~~~~~~~~--~~~--v~~~~ 176 (476)
....+|+|.|+ |.+|.++++.|+..|. +++++|... +..-..+.....+.+. .+. +..+.
T Consensus 34 L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~ 112 (346)
T 1y8q_A 34 LRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT 112 (346)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence 34579999996 8999999999999997 688876432 1111122222222222 234 44554
Q ss_pred eecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 177 ~Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
.++.+ ...++++++ |+||.+.. |...-..+-++|.+.++ .+|...+.+.+|
T Consensus 113 ~~~~~--~~~~~~~~~--dvVv~~~d-----------------~~~~r~~ln~~~~~~~i--p~i~~~~~G~~G 163 (346)
T 1y8q_A 113 EDIEK--KPESFFTQF--DAVCLTCC-----------------SRDVIVKVDQICHKNSI--KFFTGDVFGYHG 163 (346)
T ss_dssp SCGGG--CCHHHHTTC--SEEEEESC-----------------CHHHHHHHHHHHHHTTC--EEEEEEEEBTEE
T ss_pred cccCc--chHHHhcCC--CEEEEcCC-----------------CHHHHHHHHHHHHHcCC--CEEEEeecccEE
Confidence 45533 234566665 99998753 22333456778888886 588877766665
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.75 E-value=0.041 Score=54.34 Aligned_cols=77 Identities=19% Similarity=0.130 Sum_probs=48.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC--C-HHHHHHhhc-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN--D-APLLTKLFD- 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d-~~~l~~~~~- 190 (476)
..+.+|||+|+ |.||...++.+...|. +|+++++..+ +.+....-+... ..|.. | .+..+++.+
T Consensus 170 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~---------~~~~a~~lGa~~-vi~~~~~~~~~~~~~i~~~ 238 (356)
T 1pl8_A 170 TLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT---------RLSKAKEIGADL-VLQISKESPQEIARKVEGQ 238 (356)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH---------HHHHHHHTTCSE-EEECSSCCHHHHHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH---------HHHHHHHhCCCE-EEcCcccccchHHHHHHHH
Confidence 45789999996 9999999999999999 8999987321 111111113221 13444 2 333333222
Q ss_pred -cCCccEEEEcccc
Q 011841 191 -VVPFTHVLHLAAQ 203 (476)
Q Consensus 191 -~~~~d~Vi~~Ag~ 203 (476)
+.++|+||+++|.
T Consensus 239 ~~~g~D~vid~~g~ 252 (356)
T 1pl8_A 239 LGCKPEVTIECTGA 252 (356)
T ss_dssp HTSCCSEEEECSCC
T ss_pred hCCCCCEEEECCCC
Confidence 1357999999985
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.011 Score=56.69 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=32.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
+.++|.|.|+ |.+|..++..|++.|++|++.+|+.+
T Consensus 3 ~~~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~ 38 (283)
T 4e12_A 3 GITNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTD 38 (283)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 3478999986 99999999999999999999998654
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.053 Score=53.90 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=49.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-----HHHHHHhh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-----APLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~l~~~~ 189 (476)
..+.+|||+|+ |.||...++.+...|. +|++++++.+ .....+ . -+...+ .|..+ .+.+.++.
T Consensus 191 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~----~~~~~~-~----lGa~~v-i~~~~~~~~~~~~~~~~~ 259 (374)
T 1cdo_A 191 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPD----KFEKAK-V----FGATDF-VNPNDHSEPISQVLSKMT 259 (374)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHH-H----TTCCEE-ECGGGCSSCHHHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHHH-H----hCCceE-EeccccchhHHHHHHHHh
Confidence 46789999996 9999999999999998 7999887433 111111 1 132221 34432 12344444
Q ss_pred ccCCccEEEEcccc
Q 011841 190 DVVPFTHVLHLAAQ 203 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~ 203 (476)
.+ ++|+||+++|.
T Consensus 260 ~~-g~D~vid~~g~ 272 (374)
T 1cdo_A 260 NG-GVDFSLECVGN 272 (374)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCC
Confidence 44 67999999975
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.03 Score=54.96 Aligned_cols=77 Identities=18% Similarity=0.117 Sum_probs=49.2
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc--cC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD--VV 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~ 192 (476)
...+.+|||+|+ |.||...++.+...|.+|++++++.+ +.+....-+...+ .|..+.+..+.+.+ +
T Consensus 164 ~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~---------~~~~~~~lGa~~~-i~~~~~~~~~~~~~~~g- 231 (340)
T 3s2e_A 164 TRPGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDA---------KLNLARRLGAEVA-VNARDTDPAAWLQKEIG- 231 (340)
T ss_dssp CCTTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHH---------HHHHHHHTTCSEE-EETTTSCHHHHHHHHHS-
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHH---------HHHHHHHcCCCEE-EeCCCcCHHHHHHHhCC-
Confidence 346789999997 88999999999999999999987332 1111111232222 35444333332222 2
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||++++.
T Consensus 232 ~~d~vid~~g~ 242 (340)
T 3s2e_A 232 GAHGVLVTAVS 242 (340)
T ss_dssp SEEEEEESSCC
T ss_pred CCCEEEEeCCC
Confidence 56999999874
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.04 Score=52.63 Aligned_cols=34 Identities=18% Similarity=0.283 Sum_probs=31.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
.|+|.|.|++|.+|..+++.|++.|++|++.+|+
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~ 44 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIA 44 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 3699999999999999999999999999999884
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.018 Score=56.12 Aligned_cols=75 Identities=20% Similarity=0.174 Sum_probs=51.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+.+|||+||+|.||...++.+...|.+|+++++.. . ..... .-+... ..|..+.+.+.+.+.+ +|
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-----~--~~~~~---~lGa~~-~i~~~~~~~~~~~~~g--~D 217 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-----N--HAFLK---ALGAEQ-CINYHEEDFLLAISTP--VD 217 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-----H--HHHHH---HHTCSE-EEETTTSCHHHHCCSC--EE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-----h--HHHHH---HcCCCE-EEeCCCcchhhhhccC--CC
Confidence 4678999999999999999999999999999987521 1 11111 112221 2355555435555554 49
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+||++.|.
T Consensus 218 ~v~d~~g~ 225 (321)
T 3tqh_A 218 AVIDLVGG 225 (321)
T ss_dssp EEEESSCH
T ss_pred EEEECCCc
Confidence 99999984
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=95.59 E-value=0.044 Score=54.69 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=53.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+++|+|+|+ |.+|+.+++.+.+.|++|++++......... . --+.+..|..|.+.+.++.+.+ |
T Consensus 10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~~--------~---ad~~~~~~~~d~~~l~~~~~~~--d 75 (377)
T 3orq_A 10 KFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCRY--------V---AHEFIQAKYDDEKALNQLGQKC--D 75 (377)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTGG--------G---SSEEEECCTTCHHHHHHHHHHC--S
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhhh--------h---CCEEEECCCCCHHHHHHHHHhC--C
Confidence 45789999996 9999999999999999999998754321110 1 1135668999999999998876 8
Q ss_pred EEEE
Q 011841 196 HVLH 199 (476)
Q Consensus 196 ~Vi~ 199 (476)
+|+.
T Consensus 76 vi~~ 79 (377)
T 3orq_A 76 VITY 79 (377)
T ss_dssp EEEE
T ss_pred ccee
Confidence 8754
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.056 Score=51.82 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=30.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
+.|+|.|.|+ |.+|..+++.|.+.|++|++.+|+
T Consensus 3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~~~ 36 (301)
T 3cky_A 3 KSIKIGFIGL-GAMGKPMAINLLKEGVTVYAFDLM 36 (301)
T ss_dssp -CCEEEEECC-CTTHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4579999995 999999999999999999999883
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0078 Score=57.60 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=49.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..+++|+|+|+ |.+|+.++..|++.|. +|++.+|..+..+. +.. ++..+ ..+++.+++.++
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~---------la~-~~~~~-----~~~~~~~~~~~a-- 176 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNN---------WSL-NINKI-----NLSHAESHLDEF-- 176 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTT---------CCS-CCEEE-----CHHHHHHTGGGC--
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH---------HHH-hcccc-----cHhhHHHHhcCC--
Confidence 46789999997 8999999999999998 89999996542221 111 22221 245566777766
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||++...
T Consensus 177 DiVInaTp~ 185 (277)
T 3don_A 177 DIIINTTPA 185 (277)
T ss_dssp SEEEECCC-
T ss_pred CEEEECccC
Confidence 999998754
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.077 Score=49.60 Aligned_cols=33 Identities=21% Similarity=0.516 Sum_probs=28.0
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEE-EeCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLG-LDNF 151 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~-~~R~ 151 (476)
+|+|.|+|+ |.+|+.+++.+.+.++++++ ++|.
T Consensus 3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~ 36 (243)
T 3qy9_A 3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENT 36 (243)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecC
Confidence 479999999 99999999999999777766 4553
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.54 E-value=0.061 Score=53.48 Aligned_cols=76 Identities=20% Similarity=0.255 Sum_probs=49.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-----HHHHHHhh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-----APLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~l~~~~ 189 (476)
..+.+|||+|+ |.||...++.+...|. +|++++++.+. .... ... +... ..|..+ .+.+.++.
T Consensus 190 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~----~~~~-~~l----Ga~~-vi~~~~~~~~~~~~~~~~~ 258 (374)
T 2jhf_A 190 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDK----FAKA-KEV----GATE-CVNPQDYKKPIQEVLTEMS 258 (374)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG----HHHH-HHT----TCSE-EECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHH----HHHH-HHh----CCce-EecccccchhHHHHHHHHh
Confidence 46789999995 9999999999999998 79999874331 1111 111 2221 134432 12344443
Q ss_pred ccCCccEEEEcccc
Q 011841 190 DVVPFTHVLHLAAQ 203 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~ 203 (476)
.+ ++|+||+++|.
T Consensus 259 ~~-g~D~vid~~g~ 271 (374)
T 2jhf_A 259 NG-GVDFSFEVIGR 271 (374)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCcEEEECCCC
Confidence 34 67999999985
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.062 Score=53.48 Aligned_cols=76 Identities=20% Similarity=0.189 Sum_probs=49.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-----HHHHHHhh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-----APLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~l~~~~ 189 (476)
..+.+|||+|+ |.||...++.+...|. +|++++++.+. .... .. -+...+ .|..+ .+.+.++.
T Consensus 194 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~----~~~a-~~----lGa~~v-i~~~~~~~~~~~~v~~~~ 262 (376)
T 1e3i_A 194 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEK----FPKA-KA----LGATDC-LNPRELDKPVQDVITELT 262 (376)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG----HHHH-HH----TTCSEE-ECGGGCSSCHHHHHHHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHH----HHHH-HH----hCCcEE-EccccccchHHHHHHHHh
Confidence 46789999996 9999999999999998 79998874331 1111 11 122211 34432 12344444
Q ss_pred ccCCccEEEEcccc
Q 011841 190 DVVPFTHVLHLAAQ 203 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~ 203 (476)
.+ .+|+||+++|.
T Consensus 263 ~~-g~Dvvid~~G~ 275 (376)
T 1e3i_A 263 AG-GVDYSLDCAGT 275 (376)
T ss_dssp TS-CBSEEEESSCC
T ss_pred CC-CccEEEECCCC
Confidence 44 67999999985
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.024 Score=56.22 Aligned_cols=32 Identities=28% Similarity=0.267 Sum_probs=28.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC-CeEEEEeC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDN 150 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R 150 (476)
++|.|.||+|++|+.+++.|.+++ .+|+++.+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~ 41 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAA 41 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEc
Confidence 689999999999999999998875 58888865
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.015 Score=56.18 Aligned_cols=33 Identities=30% Similarity=0.600 Sum_probs=30.1
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
+|+|.|.|+ |.+|..++..|.+.|++|++.+|+
T Consensus 3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECC
Confidence 479999996 999999999999999999999984
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.042 Score=53.04 Aligned_cols=72 Identities=13% Similarity=0.109 Sum_probs=51.4
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
...+++|+|.|+ |.||+.+++.|...|.+|++.+|..+ +.. . ....++..+. .++++++++++
T Consensus 154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~-------~~~-~-~~~~g~~~~~-----~~~l~~~l~~a-- 216 (300)
T 2rir_A 154 TIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSA-------HLA-R-ITEMGLVPFH-----TDELKEHVKDI-- 216 (300)
T ss_dssp CSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHH-------HHH-H-HHHTTCEEEE-----GGGHHHHSTTC--
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHH-------HHH-H-HHHCCCeEEc-----hhhHHHHhhCC--
Confidence 357899999996 99999999999999999999998431 111 0 1112443321 34577778777
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||.+...
T Consensus 217 DvVi~~~p~ 225 (300)
T 2rir_A 217 DICINTIPS 225 (300)
T ss_dssp SEEEECCSS
T ss_pred CEEEECCCh
Confidence 999998864
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.012 Score=61.67 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=28.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
..+++++|||| |.+|+.++..|++.|++|++++|..
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~ 397 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTY 397 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence 45789999999 7999999999999999999999843
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.035 Score=53.42 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=50.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+++|+|.|+ |.||+.+++.|...|.+|++.+|..+ +.. . ....++..+ + .+++.++++++ |
T Consensus 153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~-------~~~-~-~~~~g~~~~--~---~~~l~~~l~~a--D 215 (293)
T 3d4o_A 153 IHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESD-------LLA-R-IAEMGMEPF--H---ISKAAQELRDV--D 215 (293)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHH-------HHH-H-HHHTTSEEE--E---GGGHHHHTTTC--S
T ss_pred CCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHH-------HHH-H-HHHCCCeec--C---hhhHHHHhcCC--C
Confidence 57899999995 99999999999999999999998421 111 0 111244432 2 34567777777 9
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+|+.+...
T Consensus 216 vVi~~~p~ 223 (293)
T 3d4o_A 216 VCINTIPA 223 (293)
T ss_dssp EEEECCSS
T ss_pred EEEECCCh
Confidence 99998753
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.028 Score=54.58 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=47.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++|+|.|.|. |.+|..+++.|++.|++|++.+|+.+.. .... ..++.. .+++.++++.+ |
T Consensus 19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~----~~l~-----~~g~~~-------~~~~~~~~~~a--D 79 (310)
T 3doj_A 19 SHMMEVGFLGL-GIMGKAMSMNLLKNGFKVTVWNRTLSKC----DELV-----EHGASV-------CESPAEVIKKC--K 79 (310)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGG----HHHH-----HTTCEE-------CSSHHHHHHHC--S
T ss_pred ccCCEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHHH----HHHH-----HCCCeE-------cCCHHHHHHhC--C
Confidence 45689999985 9999999999999999999999865422 1111 113322 12345566666 9
Q ss_pred EEEEccc
Q 011841 196 HVLHLAA 202 (476)
Q Consensus 196 ~Vi~~Ag 202 (476)
+||-+..
T Consensus 80 vvi~~vp 86 (310)
T 3doj_A 80 YTIAMLS 86 (310)
T ss_dssp EEEECCS
T ss_pred EEEEEcC
Confidence 9998764
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.044 Score=57.69 Aligned_cols=36 Identities=33% Similarity=0.305 Sum_probs=30.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~ 152 (476)
..+.+|+|.|+ |.+|.++++.|+..|. +++++|.+.
T Consensus 324 L~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~ 360 (615)
T 4gsl_A 324 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT 360 (615)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 35679999997 9999999999999996 677777654
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.056 Score=53.45 Aligned_cols=38 Identities=16% Similarity=0.026 Sum_probs=33.1
Q ss_pred CCC-CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 116 PNG-MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 116 ~~~-~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
..+ .+|||+||+|.||...++.+...|++|+++++..+
T Consensus 165 ~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~ 203 (364)
T 1gu7_A 165 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP 203 (364)
T ss_dssp CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred CCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCcc
Confidence 356 89999999999999999999989999999987443
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.11 Score=51.64 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC--C---HHHHHHhh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN--D---APLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d---~~~l~~~~ 189 (476)
..+.+|||+|+ |.||...++.+...|+ +|++++++.+. +. ....-+...+ .|.. + .+.+.++.
T Consensus 192 ~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~----~~-----~a~~lGa~~v-i~~~~~~~~~~~~i~~~~ 260 (378)
T 3uko_A 192 EPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKK----YE-----TAKKFGVNEF-VNPKDHDKPIQEVIVDLT 260 (378)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTH----HH-----HHHTTTCCEE-ECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHH----HH-----HHHHcCCcEE-EccccCchhHHHHHHHhc
Confidence 46779999998 9999999999999998 89999875431 11 1112233221 3433 1 23455555
Q ss_pred ccCCccEEEEcccc
Q 011841 190 DVVPFTHVLHLAAQ 203 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~ 203 (476)
.+ ++|+||+++|.
T Consensus 261 ~g-g~D~vid~~g~ 273 (378)
T 3uko_A 261 DG-GVDYSFECIGN 273 (378)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCC
Confidence 55 78999999985
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.039 Score=53.09 Aligned_cols=66 Identities=12% Similarity=0.083 Sum_probs=46.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
..|+|.|.|. |.+|..+++.|++.|++|++.+|+.+..+.. .. .++.. ..+++++++ + |+
T Consensus 14 ~~~~I~vIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~----~~-----~g~~~-------~~~~~~~~~-a--Dv 73 (296)
T 3qha_A 14 EQLKLGYIGL-GNMGAPMATRMTEWPGGVTVYDIRIEAMTPL----AE-----AGATL-------ADSVADVAA-A--DL 73 (296)
T ss_dssp -CCCEEEECC-STTHHHHHHHHTTSTTCEEEECSSTTTSHHH----HH-----TTCEE-------CSSHHHHTT-S--SE
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH----HH-----CCCEE-------cCCHHHHHh-C--CE
Confidence 3578999994 9999999999999999999999976543321 11 13322 123455666 5 99
Q ss_pred EEEccc
Q 011841 197 VLHLAA 202 (476)
Q Consensus 197 Vi~~Ag 202 (476)
||-+..
T Consensus 74 vi~~vp 79 (296)
T 3qha_A 74 IHITVL 79 (296)
T ss_dssp EEECCS
T ss_pred EEEECC
Confidence 998764
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.089 Score=52.22 Aligned_cols=94 Identities=20% Similarity=0.115 Sum_probs=55.0
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC---eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD---GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~---~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
+++|.|.||||++|..|++.|.++++ ++..+.-..+..... ...+.....-++.. + .++++
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~---------~~~~~~~~~~~~~~-~----~~~~~-- 65 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL---------KFKDQDITIEETTE-T----AFEGV-- 65 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEE---------EETTEEEEEEECCT-T----TTTTC--
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcc---------eecCCCceEeeCCH-H----HhcCC--
Confidence 36899999999999999999988766 344443211111110 00111222222221 1 24555
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcc
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSS 247 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~ 247 (476)
|+||-+++.. .+...+..+.+.|. ++|=.|+..
T Consensus 66 Dvvf~a~~~~------------------~s~~~a~~~~~~G~--~vIDlSa~~ 98 (366)
T 3pwk_A 66 DIALFSAGSS------------------TSAKYAPYAVKAGV--VVVDNTSYF 98 (366)
T ss_dssp SEEEECSCHH------------------HHHHHHHHHHHTTC--EEEECSSTT
T ss_pred CEEEECCChH------------------hHHHHHHHHHHCCC--EEEEcCCcc
Confidence 9999998641 13455566667776 688888754
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.065 Score=53.23 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=49.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-----HHHHHHhh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-----APLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~l~~~~ 189 (476)
..+.+|||+|+ |.||...++.+...|. +|++++++.+ .....+ . -+...+ .|..+ .+.+.++.
T Consensus 190 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~a~-~----lGa~~v-i~~~~~~~~~~~~i~~~t 258 (373)
T 1p0f_A 190 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKD----KFPKAI-E----LGATEC-LNPKDYDKPIYEVICEKT 258 (373)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG----GHHHHH-H----TTCSEE-ECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHH----HHHHHH-H----cCCcEE-EecccccchHHHHHHHHh
Confidence 46789999996 9999999999988998 7999887432 111111 1 122211 24332 12344444
Q ss_pred ccCCccEEEEcccc
Q 011841 190 DVVPFTHVLHLAAQ 203 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~ 203 (476)
.+ ++|+||+++|.
T Consensus 259 ~g-g~Dvvid~~g~ 271 (373)
T 1p0f_A 259 NG-GVDYAVECAGR 271 (373)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCC
Confidence 44 67999999975
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.29 E-value=0.017 Score=57.28 Aligned_cols=75 Identities=21% Similarity=0.160 Sum_probs=50.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH-HHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA-PLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~~~~~ 194 (476)
..+.+|||+|+ |.||...++.+...|++|++++++.+.. .... .. +...+ .|..+. +..+++.. ++
T Consensus 178 ~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~----~~~~-~l----Ga~~v-~~~~~~~~~~~~~~~--~~ 244 (360)
T 1piw_A 178 GPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKR----EDAM-KM----GADHY-IATLEEGDWGEKYFD--TF 244 (360)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTH----HHHH-HH----TCSEE-EEGGGTSCHHHHSCS--CE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHH----HHHH-Hc----CCCEE-EcCcCchHHHHHhhc--CC
Confidence 45789999999 9999999999999999999999855421 1111 11 22211 354443 33333332 56
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||+++|.
T Consensus 245 D~vid~~g~ 253 (360)
T 1piw_A 245 DLIVVCASS 253 (360)
T ss_dssp EEEEECCSC
T ss_pred CEEEECCCC
Confidence 999999985
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.05 Score=54.63 Aligned_cols=76 Identities=22% Similarity=0.169 Sum_probs=51.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH----HHHHHhhc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA----PLLTKLFD 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~----~~l~~~~~ 190 (476)
..+.+|||+|+ |.||...++.+...|. +|++++++.+ +.+....-++.+ .|..+. +.+.++..
T Consensus 184 ~~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~---------~~~~a~~lGa~~--i~~~~~~~~~~~v~~~t~ 251 (398)
T 1kol_A 184 GPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPA---------RLAHAKAQGFEI--ADLSLDTPLHEQIAALLG 251 (398)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH---------HHHHHHHTTCEE--EETTSSSCHHHHHHHHHS
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHH---------HHHHHHHcCCcE--EccCCcchHHHHHHHHhC
Confidence 46789999995 9999999999999998 6888876321 111222235543 455432 34545544
Q ss_pred cCCccEEEEcccc
Q 011841 191 VVPFTHVLHLAAQ 203 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~ 203 (476)
+.++|+||+++|.
T Consensus 252 g~g~Dvvid~~G~ 264 (398)
T 1kol_A 252 EPEVDCAVDAVGF 264 (398)
T ss_dssp SSCEEEEEECCCT
T ss_pred CCCCCEEEECCCC
Confidence 4467999999986
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.052 Score=57.69 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=68.4
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCC--------------CchHHHHHHhhh----cCCceEEEEe
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYY--------------DPSLKRARQKLL----QKHQVFIVEG 177 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~--------------~~~~~~~~~~~~----~~~~v~~~~~ 177 (476)
...+|+|.|+ |.||.++++.|+..|. ++++++...=.. ...+.....+.+ ..-.+..+..
T Consensus 16 ~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~ 94 (640)
T 1y8q_B 16 AGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHD 94 (640)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEES
T ss_pred hcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3468999997 9999999999999996 688887543110 011111222222 1234566666
Q ss_pred ecCCHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCcccc
Q 011841 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVY 249 (476)
Q Consensus 178 Dl~d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vy 249 (476)
++++......++.++ |+||++.. |+..-..+.+.|.+.+++ +|+.++.+.+
T Consensus 95 ~i~~~~~~~~~~~~~--DlVvda~D-----------------n~~aR~~ln~~c~~~~iP--lI~~g~~G~~ 145 (640)
T 1y8q_B 95 SIMNPDYNVEFFRQF--ILVMNALD-----------------NRAARNHVNRMCLAADVP--LIESGTAGYL 145 (640)
T ss_dssp CTTSTTSCHHHHTTC--SEEEECCS-----------------CHHHHHHHHHHHHHHTCC--EEEEEEETTE
T ss_pred ccchhhhhHhhhcCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCCC--EEEEEEeccc
Confidence 775433234566666 99999753 233334566778888864 6666554433
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.025 Score=54.22 Aligned_cols=36 Identities=25% Similarity=0.389 Sum_probs=27.5
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEe
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLD 149 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~ 149 (476)
.|...++|.|.|++|-+|+.+++.+.+. +.+++++.
T Consensus 17 ~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~v 53 (288)
T 3ijp_A 17 QGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVL 53 (288)
T ss_dssp ----CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEB
T ss_pred hccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 3345579999999999999999999865 67777664
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.039 Score=54.59 Aligned_cols=75 Identities=20% Similarity=0.086 Sum_probs=51.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+.+|||+|+ |.||...++.+...|.+|+++++..+ ........ -+... ..|..+.+.+.++.. ++|+
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~----~~~~~~~~----lGa~~-vi~~~~~~~~~~~~~--g~D~ 247 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNK----KREEALQD----LGADD-YVIGSDQAKMSELAD--SLDY 247 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTT----HHHHHHTT----SCCSC-EEETTCHHHHHHSTT--TEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChH----HHHHHHHH----cCCce-eeccccHHHHHHhcC--CCCE
Confidence 6789999996 99999999999999999999998543 11111101 12221 135556666666554 4699
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
||+++|.
T Consensus 248 vid~~g~ 254 (357)
T 2cf5_A 248 VIDTVPV 254 (357)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999985
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.084 Score=52.46 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=52.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+.+|||+|+ |.||...++.+...|.+|++++++.+. .+... +. +... ..|..+.+.++++.. ++|
T Consensus 193 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~----~~~a~-~l----Ga~~-vi~~~~~~~~~~~~~--g~D 259 (369)
T 1uuf_A 193 GPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAK----REAAK-AL----GADE-VVNSRNADEMAAHLK--SFD 259 (369)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGG----HHHHH-HH----TCSE-EEETTCHHHHHTTTT--CEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHH-Hc----CCcE-EeccccHHHHHHhhc--CCC
Confidence 46789999998 889999999999999999999974431 12111 11 2221 246666665555543 569
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+||+++|.
T Consensus 260 vvid~~g~ 267 (369)
T 1uuf_A 260 FILNTVAA 267 (369)
T ss_dssp EEEECCSS
T ss_pred EEEECCCC
Confidence 99999986
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=95.20 E-value=0.043 Score=52.54 Aligned_cols=36 Identities=19% Similarity=0.166 Sum_probs=32.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~ 152 (476)
..+++|+|+|+ |.+|+.++..|++.|. +|++.+|..
T Consensus 124 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~ 160 (281)
T 3o8q_A 124 LKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTF 160 (281)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 57899999997 8999999999999996 999999943
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.022 Score=56.17 Aligned_cols=71 Identities=17% Similarity=0.100 Sum_probs=48.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+.+|||+|+ |.||...++.+...|.+|+++++..+.. ... .. + +...+. .+.+.+.+ ++|
T Consensus 175 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~----~~~-~~-l---Ga~~v~---~~~~~~~~-----~~D 236 (348)
T 3two_A 175 TKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKK----QDA-LS-M---GVKHFY---TDPKQCKE-----ELD 236 (348)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTH----HHH-HH-T---TCSEEE---SSGGGCCS-----CEE
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHH----HHH-Hh-c---CCCeec---CCHHHHhc-----CCC
Confidence 46789999997 9999999999999999999998855421 111 11 1 222222 34443322 569
Q ss_pred EEEEccccC
Q 011841 196 HVLHLAAQA 204 (476)
Q Consensus 196 ~Vi~~Ag~~ 204 (476)
+||+++|..
T Consensus 237 ~vid~~g~~ 245 (348)
T 3two_A 237 FIISTIPTH 245 (348)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCcH
Confidence 999999863
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.02 Score=55.91 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=33.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP 157 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~ 157 (476)
...+|.|.|| |.+|+.++..++..|++|++.+.+.+..+.
T Consensus 5 ~~~~VaViGa-G~MG~giA~~~a~~G~~V~l~D~~~~~l~~ 44 (319)
T 3ado_A 5 AAGDVLIVGS-GLVGRSWAMLFASGGFRVKLYDIEPRQITG 44 (319)
T ss_dssp --CEEEEECC-SHHHHHHHHHHHHTTCCEEEECSCHHHHHH
T ss_pred CCCeEEEECC-cHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence 4468999997 999999999999999999999986554333
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.037 Score=52.80 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=47.9
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
...+++|+|+|+++.+|+.++..|+.+|..|+++.+.. ..+.+.++.+
T Consensus 157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------------------------~~L~~~~~~A-- 204 (285)
T 3p2o_A 157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------------------------KDLSLYTRQA-- 204 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------------------------SCHHHHHTTC--
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------------------------hhHHHHhhcC--
Confidence 36889999999999999999999999999999997621 1255666766
Q ss_pred cEEEEccccC
Q 011841 195 THVLHLAAQA 204 (476)
Q Consensus 195 d~Vi~~Ag~~ 204 (476)
|+||...|..
T Consensus 205 DIVI~Avg~p 214 (285)
T 3p2o_A 205 DLIIVAAGCV 214 (285)
T ss_dssp SEEEECSSCT
T ss_pred CEEEECCCCC
Confidence 9999998863
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.11 Score=54.67 Aligned_cols=35 Identities=34% Similarity=0.309 Sum_probs=29.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNF 151 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~ 151 (476)
..+.+|+|.|+ |.+|.++++.|+..|. +++++|.+
T Consensus 325 L~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D 360 (598)
T 3vh1_A 325 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNG 360 (598)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34679999997 9999999999999997 68888654
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.049 Score=51.89 Aligned_cols=35 Identities=20% Similarity=0.140 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNF 151 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~ 151 (476)
..+++++|+|+ |.+|+.++..|++.|. +|++++|.
T Consensus 118 l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~ 153 (272)
T 3pwz_A 118 LRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRD 153 (272)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred ccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 57899999997 8999999999999995 99999984
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.067 Score=51.53 Aligned_cols=35 Identities=23% Similarity=0.315 Sum_probs=31.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
.++|.|.|+ |.+|..++..|++.|++|++.+|+.+
T Consensus 15 ~~~I~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~ 49 (302)
T 1f0y_A 15 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED 49 (302)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 468999997 99999999999999999999998654
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.26 Score=48.74 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=49.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-----HHHHHHhh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-----APLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-----~~~l~~~~ 189 (476)
..+.+|||+|+ |.||...++.+...|. +|++++++.+. ....+ .. +... ..|..+ .+.+.++.
T Consensus 189 ~~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~----~~~~~-~l----Ga~~-vi~~~~~~~~~~~~v~~~~ 257 (373)
T 2fzw_A 189 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDK----FARAK-EF----GATE-CINPQDFSKPIQEVLIEMT 257 (373)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGG----HHHHH-HH----TCSE-EECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHH----HHHHH-Hc----CCce-EeccccccccHHHHHHHHh
Confidence 46789999996 9999999999999998 79999874431 11111 11 2211 134432 12344444
Q ss_pred ccCCccEEEEcccc
Q 011841 190 DVVPFTHVLHLAAQ 203 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~ 203 (476)
.+ ++|+||+++|.
T Consensus 258 ~~-g~D~vid~~g~ 270 (373)
T 2fzw_A 258 DG-GVDYSFECIGN 270 (373)
T ss_dssp TS-CBSEEEECSCC
T ss_pred CC-CCCEEEECCCc
Confidence 44 67999999975
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.059 Score=52.11 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=45.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
..|+|.|+|. |.+|..+++.|++.|++|++.+|+.+. ..... ..++.. . +++.++++++ |+
T Consensus 8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~----~~~~~-----~~g~~~----~---~~~~e~~~~a--Dv 68 (306)
T 3l6d_A 8 FEFDVSVIGL-GAMGTIMAQVLLKQGKRVAIWNRSPGK----AAALV-----AAGAHL----C---ESVKAALSAS--PA 68 (306)
T ss_dssp CSCSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHH----HHHHH-----HHTCEE----C---SSHHHHHHHS--SE
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHH-----HCCCee----c---CCHHHHHhcC--CE
Confidence 4578999985 999999999999999999999984321 11111 113321 1 2345566666 99
Q ss_pred EEEccc
Q 011841 197 VLHLAA 202 (476)
Q Consensus 197 Vi~~Ag 202 (476)
||-+..
T Consensus 69 Vi~~vp 74 (306)
T 3l6d_A 69 TIFVLL 74 (306)
T ss_dssp EEECCS
T ss_pred EEEEeC
Confidence 998764
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.036 Score=54.83 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=27.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEe
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLD 149 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~ 149 (476)
++++|.|.||+|++|+.+++.|.+.. .+|+.+.
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~ 36 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVS 36 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEe
Confidence 34799999999999999999998764 4777775
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.045 Score=55.53 Aligned_cols=71 Identities=21% Similarity=0.186 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
...+++|+|.|+ |.+|+.+++.+.+.|++|++++..... + . .. .. -+.+..|..|.+.+.++.+.+
T Consensus 32 ~~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~~--p----~-~~-~a---d~~~~~~~~d~~~l~~~a~~~-- 97 (419)
T 4e4t_A 32 ILPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPAS--P----A-GA-VA---DRHLRAAYDDEAALAELAGLC-- 97 (419)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTTC--H----H-HH-HS---SEEECCCTTCHHHHHHHHHHC--
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCcC--c----h-hh-hC---CEEEECCcCCHHHHHHHHhcC--
Confidence 346789999996 899999999999999999999753321 1 1 11 11 134568999999999988765
Q ss_pred cEEEE
Q 011841 195 THVLH 199 (476)
Q Consensus 195 d~Vi~ 199 (476)
|+|+.
T Consensus 98 D~V~~ 102 (419)
T 4e4t_A 98 EAVST 102 (419)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99884
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.039 Score=56.32 Aligned_cols=33 Identities=36% Similarity=0.714 Sum_probs=30.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
|+|.|.| .|++|..++..|++.|++|++++|+.
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~ 33 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSS 33 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899999 59999999999999999999999843
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.07 E-value=0.081 Score=55.74 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=68.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
++|+|.|+ |-+|+++++.|.+.|++|++++++.+..++. . .++.+|-+|++.++++=- .+.|.||
T Consensus 349 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~------------~-~~i~gD~t~~~~L~~agi-~~ad~vi 413 (565)
T 4gx0_A 349 ELIFIIGH-GRIGCAAAAFLDRKPVPFILIDRQESPVCND------------H-VVVYGDATVGQTLRQAGI-DRASGII 413 (565)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCEEEEESSCCSSCCS------------S-CEEESCSSSSTHHHHHTT-TSCSEEE
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEECChHHHhhc------------C-CEEEeCCCCHHHHHhcCc-cccCEEE
Confidence 78999997 9999999999999999999999977655432 1 789999999998887532 1459999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIV 241 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V 241 (476)
-+.+. -+.|+ .++..|++.+...++|
T Consensus 414 ~~~~~-------------d~~ni----~~~~~ak~l~~~~~ii 439 (565)
T 4gx0_A 414 VTTND-------------DSTNI----FLTLACRHLHSHIRIV 439 (565)
T ss_dssp ECCSC-------------HHHHH----HHHHHHHHHCSSSEEE
T ss_pred EECCC-------------chHHH----HHHHHHHHHCCCCEEE
Confidence 87653 12344 3445677777754666
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.062 Score=54.22 Aligned_cols=72 Identities=24% Similarity=0.130 Sum_probs=49.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..+++|+|+|+ |.+|..+++.|...|. +|++.+|..+ ......... +... .+ .+++.+++.++
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~-----ra~~la~~~---g~~~--~~---~~~l~~~l~~a-- 228 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYE-----RAVELARDL---GGEA--VR---FDELVDHLARS-- 228 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHH-----HHHHHHHHH---TCEE--CC---GGGHHHHHHTC--
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHH-----HHHHHHHHc---CCce--ec---HHhHHHHhcCC--
Confidence 46789999998 9999999999999998 8999998321 110111111 2322 12 33466666666
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||.+.+.
T Consensus 229 DvVi~at~~ 237 (404)
T 1gpj_A 229 DVVVSATAA 237 (404)
T ss_dssp SEEEECCSS
T ss_pred CEEEEccCC
Confidence 999999865
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.043 Score=52.47 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=45.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|.|.|+ |.+|..+++.|++.|++|++.+|+.+.. ..... .++.. ..++.++++++ |+||
T Consensus 2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~----~~~~~-----~g~~~-------~~~~~~~~~~a--Dvvi 62 (287)
T 3pef_A 2 QKFGFIGL-GIMGSAMAKNLVKAGCSVTIWNRSPEKA----EELAA-----LGAER-------AATPCEVVESC--PVTF 62 (287)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGG----HHHHH-----TTCEE-------CSSHHHHHHHC--SEEE
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCeEEEEcCCHHHH----HHHHH-----CCCee-------cCCHHHHHhcC--CEEE
Confidence 78999995 9999999999999999999999855422 11111 13322 12345566666 9999
Q ss_pred Eccc
Q 011841 199 HLAA 202 (476)
Q Consensus 199 ~~Ag 202 (476)
-+..
T Consensus 63 ~~vp 66 (287)
T 3pef_A 63 AMLA 66 (287)
T ss_dssp ECCS
T ss_pred EEcC
Confidence 8764
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.069 Score=53.23 Aligned_cols=74 Identities=14% Similarity=0.226 Sum_probs=54.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
...|+|||+|+ |.+|..+++.+.+.|++|++++....... ... --+.+..|..|.+.+.++++..++|
T Consensus 9 ~~~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~----------~~~-~d~~~~~~~~d~~~l~~~~~~~~~d 76 (391)
T 1kjq_A 9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPA----------MHV-AHRSHVINMLDGDALRRVVELEKPH 76 (391)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGG----------GGG-SSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCCCCch----------hhh-ccceEECCCCCHHHHHHHHHHcCCC
Confidence 45689999987 79999999999999999999986432110 000 1134567888988888888766779
Q ss_pred EEEEcc
Q 011841 196 HVLHLA 201 (476)
Q Consensus 196 ~Vi~~A 201 (476)
+|+...
T Consensus 77 ~v~~~~ 82 (391)
T 1kjq_A 77 YIVPEI 82 (391)
T ss_dssp EEEECS
T ss_pred EEEECC
Confidence 998754
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.13 Score=51.05 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=30.9
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
.|.++|+|.|+| .|.+|..+++.|++.|++|++.+|.
T Consensus 18 ~Mm~~mkIgiIG-lG~mG~~~A~~L~~~G~~V~v~dr~ 54 (358)
T 4e21_A 18 LYFQSMQIGMIG-LGRMGADMVRRLRKGGHECVVYDLN 54 (358)
T ss_dssp ----CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred hhhcCCEEEEEC-chHHHHHHHHHHHhCCCEEEEEeCC
Confidence 345678999999 5999999999999999999999984
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 476 | ||||
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-75 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 1e-73 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-69 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 1e-65 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 2e-65 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 5e-65 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 2e-58 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 1e-57 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 5e-53 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 8e-53 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-52 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 1e-51 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 2e-49 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 5e-49 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 1e-46 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 7e-41 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 1e-35 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 2e-28 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 7e-26 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 3e-21 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 3e-21 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 2e-16 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 3e-16 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 7e-16 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 2e-14 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 5e-13 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 6e-09 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 3e-08 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 3e-06 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 1e-05 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 1e-05 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 2e-05 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 4e-05 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 3e-04 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 3e-04 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 4e-04 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 5e-04 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 5e-04 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 5e-04 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 6e-04 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 0.001 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 0.002 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 0.002 | |
| d7mdha1 | 175 | c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum ( | 0.003 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.003 |
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 238 bits (609), Expect = 2e-75
Identities = 77/367 (20%), Positives = 143/367 (38%), Gaps = 44/367 (11%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
M +L+TG AGF+GS + K D V+ +D Y +L+ + + ++
Sbjct: 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLT--YAGNLES-LSDISESNRYNFEHA 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
D+ D+ +T++F+ V+HLAA++ V ++ P +++ +NI G LLEV +
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA 117
Query: 238 PS--------IVWASSSSVYG---------LNTQVPFSESHRTDQPASLYAATKKAGEEI 280
S+ VYG + +P P+S Y+A+K + + +
Sbjct: 118 LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSASKASSDHL 177
Query: 281 AHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340
+ YGL YGP+ P+ + L+GK + +Y + RD+
Sbjct: 178 VRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDWL 234
Query: 341 YIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKA 400
Y++D + + YN+G + +V + +LL+
Sbjct: 235 YVEDHARALHMVVTEGKAG-------------ETYNIGGHNEKKNLDVVFTICDLLDEIV 281
Query: 401 K-------KHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQ 453
+ R G + ++ G+KP +G+RK V+WY++
Sbjct: 282 PKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWV 341
Query: 454 PRVKKEN 460
VK
Sbjct: 342 NNVKSGA 348
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 232 bits (593), Expect = 1e-73
Identities = 77/336 (22%), Positives = 134/336 (39%), Gaps = 37/336 (11%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+TG AGFVGSH + L G V +DNF + +++ + ++ D+
Sbjct: 4 ILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVE----HWIGHENFELINHDVV 59
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
+ + + HLA+ A M NP + +N G +N+L + K V + +
Sbjct: 60 EPLY-------IEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR--L 110
Query: 241 VWASSSSVYGLNTQVPFSESHRTD----QPASLYAATKKAGEEIAHTYNHIYGLALTGLR 296
+ AS+S VYG P SE + P + Y K+ E + + Y G+ + R
Sbjct: 111 LLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVAR 170
Query: 297 FFTVYGPWGRPDMAYFF--FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354
F +GP + F LQG+ + VY R F Y+ D+V G V ++
Sbjct: 171 IFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGLVALMN 227
Query: 355 TAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVP 414
+ S NLGN + +++NL+ + ++ + D
Sbjct: 228 SNVSSP--------------VNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSE-AQDDPQ 272
Query: 415 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
++ A G++P L GL K + ++
Sbjct: 273 KRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKEL 308
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 222 bits (566), Expect = 2e-69
Identities = 81/331 (24%), Positives = 131/331 (39%), Gaps = 23/331 (6%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD--PSLKRARQKLLQKHQVF-IV 175
M +LVTG AGF+GSH L + D + RA + V
Sbjct: 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 176 EGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN 235
GD+ DA L ++ ++H AA++ V ++ + +N+ G LL+
Sbjct: 61 HGDIRDAGL--LARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVD-A 117
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
+V S++ VYG ++ES + P S YAA+K + +A Y+ YGL +
Sbjct: 118 GVGRVVHVSTNQVYGSIDSGSWTESSPLE-PNSPYAASKAGSDLVARAYHRTYGLDVRIT 176
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355
R YGP+ P+ F ++L G T+ +Y D R++ + DD +G L
Sbjct: 177 RCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYG---DGANVREWVHTDDHCRGIALVLA- 232
Query: 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPY 415
G +Y++G + L IL + L R G
Sbjct: 233 ------------GGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLR 280
Query: 416 THANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
+ ++ GY+P A GL + V+WY
Sbjct: 281 YSLDGGKIERELGYRPQVSFADGLARTVRWY 311
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 213 bits (542), Expect = 1e-65
Identities = 99/339 (29%), Positives = 155/339 (45%), Gaps = 24/339 (7%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
L+TG AGF+GS+ L K V+GLDNF + + +L R + +K
Sbjct: 18 VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG 77
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
+ L +VLH AA V ++ +P + A+NI GF+N+L + Q
Sbjct: 78 DIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQS- 136
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
+A+SSS YG + +P E P S YA TK E A ++ YG + GLR+F
Sbjct: 137 FTYAASSSTYGDHPGLPKVEDTIGK-PLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFN 195
Query: 300 VYGPWGRPDMAYFF----FTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355
V+G P+ AY +T ++QG + + D E +RDF YI++ V+ + A
Sbjct: 196 VFGRRQDPNGAYAAVIPKWTSSMIQGDDVYING---DGETSRDFCYIENTVQANLLAA-- 250
Query: 356 AGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH----VIRMPRNG 411
A+ +VYN+ + +L L + L + V R R G
Sbjct: 251 ---------TAGLDARNQVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREG 301
Query: 412 DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
DV ++ A++S A K GY P D++AG+ + WY+ +
Sbjct: 302 DVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMFL 340
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 212 bits (541), Expect = 2e-65
Identities = 80/364 (21%), Positives = 134/364 (36%), Gaps = 32/364 (8%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS-LKRARQKLLQKH-QVFIVEG 177
L+TG G GS+ + L ++G V G+ S ++ + Q + + + G
Sbjct: 3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG 62
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK--SVN 235
DL+D LT++ V V +L A + V + ++P+ + G + LLE + +
Sbjct: 63 DLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLE 122
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
+ AS+S +YGL ++P E+ P S YA K I Y YG+
Sbjct: 123 KKTRFYQASTSELYGLVQEIPQKETTPFY-PRSPYAVAKLYAYWITVNYRESYGMYACNG 181
Query: 296 RFFTVYGPWGRPDMAYFFFT---KDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352
F P T +I QG +Y + + RD+ + D VK
Sbjct: 182 ILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL--GNMDSLRDWGHAKDYVKMQWMM 239
Query: 353 LDTAGK-----STGSGGKKRGPAQLRVYNLG------NTSPVPVGRLVSILENLLNTKAK 401
L +TG R ++ LG T G +VS+ +
Sbjct: 240 LQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKP 299
Query: 402 KHVI-----RMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRV 456
VI R R +V + + A++ G+KP L + + V +
Sbjct: 300 GDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAA------ 353
Query: 457 KKEN 460
KK +
Sbjct: 354 KKHS 357
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 211 bits (537), Expect = 5e-65
Identities = 79/344 (22%), Positives = 139/344 (40%), Gaps = 23/344 (6%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M VLVTG +G++GSH + L + G V+ LDN + L + L VEGD
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIER--LGGKHPTFVEGD 58
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ + L+T++ V+H A V ++Q P Y +N+ G + L+ ++ N +
Sbjct: 59 IRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK- 117
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY-GLALTGLRF 297
+ +++SS++VYG ++P+ ES T P S Y +K E+I ++ LR+
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRY 177
Query: 298 FTVYGPWGRPDMAY-----------FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346
F G DM + + + ++ ++ D T + D +
Sbjct: 178 FNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPT---EDGTGVRDYI 234
Query: 347 KGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 406
+D A + K + +YNLG V +V+ H
Sbjct: 235 H----VMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAP 290
Query: 407 MPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
R GD+P A+ S A ++ ++ T L + W +
Sbjct: 291 R-REGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHP 333
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 194 bits (492), Expect = 2e-58
Identities = 64/342 (18%), Positives = 119/342 (34%), Gaps = 13/342 (3%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH---QVFIVEG 177
L+TG G GS+ + L ++G V G+ +S ++ K Q H + + G
Sbjct: 4 ALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYG 63
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK--SVN 235
DL D+ L K+ + V T + +L AQ+ V+ + + + G + LL+ K +
Sbjct: 64 DLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLI 123
Query: 236 PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
AS+S +YG ++P E+ P S Y A K I + Y L
Sbjct: 124 NSVKFYQASTSELYGKVQEIPQKETTPFY-PRSPYGAAKLYAYWIVVNFREAYNLFAVNG 182
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD-DREVARDFTYIDDVVKGCVGALD 354
F P + ++ + + + + + RD+ + D V+ L
Sbjct: 183 ILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQ 242
Query: 355 TAGKSTGSGGKK-----RGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAK-KHVIRMP 408
R + ++G T + K ++
Sbjct: 243 NDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYY 302
Query: 409 RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
R +V + + + A + +KP +R+ V V
Sbjct: 303 RPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELM 344
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 192 bits (487), Expect = 1e-57
Identities = 83/343 (24%), Positives = 128/343 (37%), Gaps = 23/343 (6%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
VLVTG AG++GSH + L + G + DN ++ S+ R ++L KH + E DL
Sbjct: 3 IVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVA--RLEVLTKHHIPFYEVDL 60
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D L K+F V+H A V + Q P Y +NI G V LLE+ + N
Sbjct: 61 CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSK- 119
Query: 240 IVWASSSSVYGLNTQVPFSES---HRTDQPASLYAATKKAGEEIAHTYN--HIYGLALTG 294
V++SS++VYG T+ P P + Y TK A E I +
Sbjct: 120 FVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAI 179
Query: 295 LRFFTVY----------GPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343
LR+F P G P+ + + + + + + ++ D +RD T I
Sbjct: 180 LRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFG---DDYDSRDGTPIR 236
Query: 344 DVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH 403
D + A R +NLG+ V +
Sbjct: 237 DYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYK 296
Query: 404 VIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
V R GDV A A ++ ++ + + KW
Sbjct: 297 VTGR-RAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWT 338
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 179 bits (453), Expect = 5e-53
Identities = 72/346 (20%), Positives = 124/346 (35%), Gaps = 32/346 (9%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
+ LVTG G G++ + L ++G V GL S R +L + + +GD+
Sbjct: 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLR---ELGIEGDIQYEDGDM 58
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
DA + + V +LAAQ+ V + P + + G +LLE + +P+
Sbjct: 59 ADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETR 118
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
AS+S ++GL E+ S Y K G I Y +GL + F
Sbjct: 119 FYQASTSEMFGLIQAERQDENTPFYP-RSPYGVAKLYGHWITVNYRESFGLHASSGILFN 177
Query: 300 VYGPWGRPDMAYFFFTKDILQ---GKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356
P + T + + GK ++ + + RD+ + D V+ L
Sbjct: 178 HESPLRGIEFVTRKVTDAVARIKLGKQQELRLG--NVDAKRDWGFAGDYVEAMWLMLQQ- 234
Query: 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---RNGDV 413
+ Y + V + I + + + P R +V
Sbjct: 235 -------------DKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEV 281
Query: 414 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKE 459
N + A + G+KP T L +R V+ + RV +E
Sbjct: 282 DVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLR------RVSRE 321
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 178 bits (452), Expect = 8e-53
Identities = 63/333 (18%), Positives = 108/333 (32%), Gaps = 33/333 (9%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
V + G G VGS L++RGD L L + E +L
Sbjct: 5 VFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLL 41
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYA-MQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
D+ + F V AA+ G A P ++ N+ N++ N
Sbjct: 42 DSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQ-NDVNK 100
Query: 240 IVWASSSSVYGLNTQVPFSESHRT----DQPASLYAATKKAGEEIAHTYNHIYGLALTGL 295
+++ SS +Y + P +ES + YA K AG ++ +YN YG +
Sbjct: 101 LLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSV 160
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV--VKGCVGAL 353
+YGP + +L+ + D V T + + V A
Sbjct: 161 MPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAAS 220
Query: 354 DTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV 413
+ + L N+G + L + ++ K + V +
Sbjct: 221 IHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRV-VFDASKPDGT 279
Query: 414 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
P +V+ G+ L AGL +W+
Sbjct: 280 PRKLLDVTRL-HQLGWYHEISLEAGLASTYQWF 311
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 178 bits (451), Expect = 2e-52
Identities = 95/357 (26%), Positives = 150/357 (42%), Gaps = 36/357 (10%)
Query: 119 MT--VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKR----ARQKLLQKHQV 172
M VLVTG AG++GSH L L + G + +DNF++ + R + L V
Sbjct: 1 MAEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSV 60
Query: 173 FIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK 232
E D+ D L +LF F V+H A V ++Q P Y N+ G + LLE+ K
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 233 SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY-GLA 291
+ + +V++SS++VYG +P E+H T + Y +K EE+
Sbjct: 121 AHGVKN-LVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWN 179
Query: 292 LTGLRFFTVYGP----------WGRPDM-AYFFFTKDILQGKTIDVYKTQD---DREVAR 337
LR+F G G P+ + I + + ++V+ D R
Sbjct: 180 AVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVR 239
Query: 338 DFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN 397
D+ ++ D+ KG + AL + G R+YNLG + V ++V +E
Sbjct: 240 DYIHVVDLAKGHIAALRKLKEQCGC----------RIYNLGTGTGYSVLQMVQAMEKASG 289
Query: 398 TKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYV---SYYG 451
K V+ R GDV +AN SLA ++ G+ L +W S +G
Sbjct: 290 KKIPYKVVAR-REGDVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 176 bits (446), Expect = 1e-51
Identities = 67/343 (19%), Positives = 121/343 (35%), Gaps = 40/343 (11%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
++VTG AGF+GS+ + V LD +A + + +V +V
Sbjct: 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG----NKANLEAILGDRVELVV 58
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ DA L+ KL H AA++ ++ +P ++ +N G LL +
Sbjct: 59 GDIADAELVDKLAAKADAIV--HYAAESHNDNSLNDPSPFIHTNFIGTYTLL--EAARKY 114
Query: 237 QPSIVWASSSSVYG------------LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTY 284
S+ VYG F+ + P+S Y++TK A + I +
Sbjct: 115 DIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYN-PSSPYSSTKAASDLIVKAW 173
Query: 285 NHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344
+G+ T YGP+ + +IL G +Y + + RD+ + +D
Sbjct: 174 VRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLYG---EGKNVRDWIHTND 230
Query: 345 VVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHV 404
G L G + ++ ++ + +
Sbjct: 231 HSTGVWAILTKGRMGETYLIGADGEKNNK-------------EVLELILEKMGQPKDAYD 277
Query: 405 IRMPRNGDVPYTHANVSLAYKDFGYKPT-TDLAAGLRKFVKWY 446
R G + S + G+ P TD + GL + ++WY
Sbjct: 278 HVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWY 320
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 170 bits (430), Expect = 2e-49
Identities = 76/353 (21%), Positives = 121/353 (34%), Gaps = 26/353 (7%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLK---RARQKLLQKHQVFIVE 176
L+TG G GS+ + L +G V GL +S ++ + K + +
Sbjct: 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHY 62
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
DL DA L + DV+ V +LAAQ+ V + + P G + LLE +S
Sbjct: 63 ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTI 122
Query: 237 QPSIVW---ASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALT 293
+ SS +T P SE+ P S YAA+K A Y YGL
Sbjct: 123 DSGRTVKYYQAGSSEMFGSTPPPQSETTPFH-PRSPYAASKCAAHWYTVNYREAYGLFAC 181
Query: 294 GLRFFTVYGPWGRPDMAYFFFT---KDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350
F P + T I G ++ + + +RD+ + D V+
Sbjct: 182 NGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL--GNLQASRDWGFAGDYVEAMW 239
Query: 351 GALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP-R 409
L + V V VS LN K + + R
Sbjct: 240 LMLQ------------QEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFR 287
Query: 410 NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGF 462
+V + S A + G+KP ++ V + + +V + G+
Sbjct: 288 PAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELAK-REKVLVDAGY 339
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 169 bits (429), Expect = 5e-49
Identities = 60/339 (17%), Positives = 114/339 (33%), Gaps = 33/339 (9%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + +TGA GF+ SH + LK G V+ D + + + D
Sbjct: 16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDE---------FHLVD 66
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L K+ + V A G+ + N + +N N++E + +
Sbjct: 67 LRVMENCLKVTEGVDHVFN-LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR 125
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTD-----QPASLYAATKKAGEEIAHTYNHIYGLALT 293
+S+ + S + +P + K A EE+ YN +G+
Sbjct: 126 FFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECR 185
Query: 294 GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQD--DREVARDFTYIDDVVKGCVG 351
RF +YGP+G + + + D R FT+ID+ V+G +
Sbjct: 186 IGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLR 245
Query: 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG 411
+ + N+G+ V + + ++ + K + +P
Sbjct: 246 LTKSDFR--------------EPVNIGSDEMVSMNEMAEMVLSFEEKKLP--IHHIPGPE 289
Query: 412 DVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYY 450
V +++ +L + G+ P L GLR W
Sbjct: 290 GVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQI 328
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 162 bits (411), Expect = 1e-46
Identities = 66/349 (18%), Positives = 122/349 (34%), Gaps = 39/349 (11%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180
+L+TG GF+GS+ + +G ++ DN + L V GD+
Sbjct: 3 LLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA---TDNLHWLSSLGNFEFVHGDIR 59
Query: 181 DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSI 240
+ +T+L HLA Q + ++ NP N+ G +NLLE + N +I
Sbjct: 60 NKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNI 119
Query: 241 VWASSSSVYGLNTQVPFSESHRTD---------------QPASLYAATKKAGEEIAHTYN 285
+++S++ VYG Q ++E+ S Y +K A ++ Y
Sbjct: 120 IYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYA 179
Query: 286 HIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ--------GKTIDVYKTQDDREVAR 337
I+GL R ++YG + + K + + + R
Sbjct: 180 RIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTISG---NGKQVR 236
Query: 338 DFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLN 397
D + +D++ AL K G + + + L +LE+ N
Sbjct: 237 DVLHAEDMISLYFTALANVSKIRG---------NAFNIGGTIVNSLSLLELFKLLEDYCN 287
Query: 398 TKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
+ + + R D A++ + P G++K W
Sbjct: 288 IDMRFTNLPV-RESDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWT 335
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 148 bits (373), Expect = 7e-41
Identities = 68/397 (17%), Positives = 125/397 (31%), Gaps = 64/397 (16%)
Query: 117 NGMTVLVTGAAGFVGSHCSLAL-KKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH----- 170
+ M VLV G AG++GSH AL + V+ +D+ + S ++ + +
Sbjct: 1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60
Query: 171 ---------QVFIVEGDLNDAPLLTKL------FDVVPFTHVLHLAAQAGVRYAMQNPQS 215
+ GD+ + L + D V ++ +
Sbjct: 61 GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNN 120
Query: 216 YVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275
V LL C + S + ++ ++T + + P S Y +K
Sbjct: 121 VVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESPYGESKL 180
Query: 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFF---------------------- 313
E + YG+ LR+F G D+ +
Sbjct: 181 IAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPDQ 240
Query: 314 ---FTKDILQGKTIDVYKTQD---DREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKR 367
+D K + ++ T D RD+ ++ D+ + ALD K + K
Sbjct: 241 RLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKY 300
Query: 368 GPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDF 427
V+NLG + V ++ + R GD Y A A +
Sbjct: 301 F----SVFNLGTSRGYSVREVIEVARKTTGHPIPVRECGR-REGDPAYLVAASDKAREVL 355
Query: 428 GYKPTTDLAAGLRK-FVKWYVSYYGIQPRVKKENGFS 463
G+KP D + + K+ ++ NG++
Sbjct: 356 GWKPKYDTLEAIMETSWKFQRTH---------PNGYA 383
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 133 bits (335), Expect = 1e-35
Identities = 62/364 (17%), Positives = 103/364 (28%), Gaps = 28/364 (7%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
G V VTG GF G SL L+ G V G + AR +
Sbjct: 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETAR----VADGMQSEI 62
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
GD+ D L + V H+AAQ VR + P ++N+ G V LLE + V
Sbjct: 63 GDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG 122
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNH---------I 287
++V +S Y + + Y+ +K E + +Y +
Sbjct: 123 VKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQ 182
Query: 288 YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVK 347
+G A+ +R V G + + + +
Sbjct: 183 HGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYL 242
Query: 348 GCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM 407
L T G G + A +
Sbjct: 243 LLAQKLYTDGAEYAEGWNFGPNDADATPVKNIVEQMV---------KYWGEGASWQLDGN 293
Query: 408 PRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGIQPRVKKENGFSTTTS 467
+ Y + S A G+ P +L L V W+ ++ + + +
Sbjct: 294 AHPHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWL------SGTDMHEYSIT 347
Query: 468 TIQH 471
I +
Sbjct: 348 EINN 351
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 113 bits (283), Expect = 2e-28
Identities = 69/394 (17%), Positives = 118/394 (29%), Gaps = 44/394 (11%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF-NSYYDPSLKR-------------AR 163
G V+V G G+ G +L L K+ V +DN +D L +R
Sbjct: 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60
Query: 164 QKLLQKHQVFIVEGDLNDAPLLTKLFD---VVPFTHVLHLAAQAGVRYAMQNPQSYVASN 220
K L + + GD+ D L + F H + +N
Sbjct: 61 WKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNN 120
Query: 221 IAGFVNLLEVCKSVNPQPSIVWASSSS------------VYGLNTQVPFSESHRTDQPAS 268
+ G +N+L K + +V + + Q +S
Sbjct: 121 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASS 180
Query: 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGP----WGRPDMAYFFFTKDILQGKTI 324
Y +K +G+ T L VYG + D + G +
Sbjct: 181 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240
Query: 325 DVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGN--TSP 382
+ + Q +G + DT + + RV+N S
Sbjct: 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSV 300
Query: 383 VPVGRLVSILENLLNTKAKKHVIRMPRN-GDVPYTHANVSLAYKDFGYKPTTDLAAGLRK 441
+ LV+ + L KK + PR + Y +A + + G +P + L
Sbjct: 301 NELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKL-MELGLEPHYLSDSLLDS 359
Query: 442 FVKWYVSYYG------IQPRVK-KENGFSTTTST 468
+ + V + I P V K+ G T + T
Sbjct: 360 LLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSMT 393
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 105 bits (262), Expect = 7e-26
Identities = 55/361 (15%), Positives = 111/361 (30%), Gaps = 48/361 (13%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
M VL+ G GF+G+H + L + V GLD + L VEG
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPH--------FHFVEG 52
Query: 178 DLNDAPLLTKLFD---VVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
D++ + V V R ++ + N+ ++ K +
Sbjct: 53 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI 112
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALT- 293
+ S + ++P +Y+ +K+ + + Y GL T
Sbjct: 113 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTL 172
Query: 294 -------GLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVV 346
G R + A ++++G K D + R FT I D +
Sbjct: 173 FRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSP---IKLIDGGKQKRCFTDIRDGI 229
Query: 347 KGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSP-VPVGRLVSILENLLNTKAKKHVI 405
+ ++ AG + N+GN + L +L +H
Sbjct: 230 EALYRIIENAGNRCDG----------EIINIGNPENEASIEELGEMLLASFEKHPLRHHF 279
Query: 406 RM--------------PRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451
DV + ++ A++ ++P D+ + + + +++
Sbjct: 280 PPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 339
Query: 452 I 452
+
Sbjct: 340 L 340
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 92.6 bits (228), Expect = 3e-21
Identities = 52/354 (14%), Positives = 87/354 (24%), Gaps = 41/354 (11%)
Query: 112 TPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQ 171
P G VLVTGA GFV SH L + G V G S KR K + +
Sbjct: 5 NAVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFE 64
Query: 172 VFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
+V D+ ++ + +Y + G +N L
Sbjct: 65 TAVV-EDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIG-----GTLNALRAA 118
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ-------------------PASLYAA 272
+ V SS+ + +YAA
Sbjct: 119 AATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAA 178
Query: 273 TKKAGEEIA--HTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQ 330
+K E A + L + G P+ + ++ +V
Sbjct: 179 SKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL 238
Query: 331 DDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVS 390
+ + D+ +G L P R G +++
Sbjct: 239 ALM-PPQYYVSAVDIGLLHLGCLVL-------------PQIERRRVYGTAGTFDWNTVLA 284
Query: 391 ILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVK 444
L +K + A K G + ++ V
Sbjct: 285 TFRKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVG 338
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 91.6 bits (225), Expect = 3e-21
Identities = 48/330 (14%), Positives = 94/330 (28%), Gaps = 29/330 (8%)
Query: 121 VLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
++VTG AGF+GS+ AL +G +L +DN L+ + +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK------FVNLVDLNIADY----M 51
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
+ L ++ F V + + + Y+ N + L P
Sbjct: 52 DKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPF 111
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
+ +S+++ G + S + Y+ +
Sbjct: 112 LYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVY 171
Query: 300 VYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKS 359
+ MA F + + RDF Y+ DV +
Sbjct: 172 GPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWF------- 224
Query: 360 TGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---RNGDVPYT 416
++NLG + K + I P + +T
Sbjct: 225 -------LENGVSGIFNLGTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRYQAFT 276
Query: 417 HANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
A+++ KP +A G+ +++ W
Sbjct: 277 QADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 76.4 bits (186), Expect = 2e-16
Identities = 37/285 (12%), Positives = 68/285 (23%), Gaps = 40/285 (14%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
N TVLVTGA+G G LK+ D + S +
Sbjct: 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADS 61
Query: 177 GDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP 236
+ ++ L + +P
Sbjct: 62 INPAFQ----------GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIG 111
Query: 237 QPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIA-HTYNHIYGLALTGL 295
Q + + A+ + V D P + + Y G T +
Sbjct: 112 QKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTII 171
Query: 296 RFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDT 355
R + G ++LQ DV + C+ AL
Sbjct: 172 RAGGLLDKEGGVRELLVGKDDELLQTD--------------TKTVPRADVAEVCIQALLF 217
Query: 356 AGKSTGSGGKKRGPAQLRVYNLGN---TSPVPVGRLVSILENLLN 397
A+ + ++LG+ + P ++ + +
Sbjct: 218 EE------------AKNKAFDLGSKPEGTSTPTKDFKALFSQVTS 250
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 77.1 bits (188), Expect = 3e-16
Identities = 33/287 (11%), Positives = 65/287 (22%), Gaps = 42/287 (14%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
VL+ G G++G A G L + K ++ ++E
Sbjct: 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNID-KVQMLLYFKQLGAKLIEAS 62
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
L+D L V ++ +I + L+E K
Sbjct: 63 LDDHQRLVDALKQVDVVISAL-------------AGGVLSHHILEQLKLVEAIKEAGNIK 109
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+ + P H + + + + T +
Sbjct: 110 RFLPSE-------FGMDPDIMEHALQPGSITFIDKR-----KVRRAIEAASIPYTYVSSN 157
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358
G + I + DDV + ++D
Sbjct: 158 MFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVK-----GIWVDEDDVGTYTIKSIDDPQT 212
Query: 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI 405
+ +Y + + ++ I E L K I
Sbjct: 213 LNKT-----------MYIRPPMNILSQKEVIQIWERLSEQNLDKIYI 248
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 76.0 bits (185), Expect = 7e-16
Identities = 45/354 (12%), Positives = 86/354 (24%), Gaps = 79/354 (22%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+L+ GA G++G H + A G L ++ S K + + IV G
Sbjct: 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGS 63
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
++D V +V + + G A
Sbjct: 64 IDDHA-----SLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEV---------------- 102
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
V S +G + + G+ T +
Sbjct: 103 GTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKA---------KVRRAIEAEGIPYTYVSSN 153
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358
G + R + + + F +D+ + A+D
Sbjct: 154 CFAGYFLRSLAQAGLTAPPRDKVVILGDGNAR------VVFVKEEDIGTFTIKAVDDPRT 207
Query: 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---------- 408
+ +Y + + + LV++ E ++ +K +
Sbjct: 208 LNKT-----------LYLRLPANTLSLNELVALWEKKIDKTLEKAYVPEEEVLKLIADTP 256
Query: 409 -------------------RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFV 443
N ++ S Y D K TT + L FV
Sbjct: 257 FPANISIAISHSIFVKGDQTNFEIGPAGVEASQLYPDV--KYTT-VDEYLSNFV 307
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 71.0 bits (172), Expect = 2e-14
Identities = 44/332 (13%), Positives = 84/332 (25%), Gaps = 58/332 (17%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +L+TGA G +G LK + V+ D + + D
Sbjct: 2 MKILITGANGQLGREIQKQLKGKNVEVIPTD------------------------VQDLD 37
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
+ + + K F+ V++ AA V + N G N + +
Sbjct: 38 ITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKN--LAAAAYSVGA 95
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
IV S+ V+ + P +E + ++ + + +R
Sbjct: 96 EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGEN-----FVKALNPKYYIVRTA 150
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358
+YG KT D+ +V D +
Sbjct: 151 WLYGDGNNFVKTMINL------------GKTHDELKVVHDQVGTPTSTVDLARVVLKVID 198
Query: 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR---MPRNGDVP- 414
G ++ + L K PR P
Sbjct: 199 EKNYG----------TFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPK 248
Query: 415 YTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446
Y+ + G + L++++
Sbjct: 249 YSVLRNYMLELTTGDIT-REWKESLKEYIDLL 279
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 67.3 bits (162), Expect = 5e-13
Identities = 45/331 (13%), Positives = 90/331 (27%), Gaps = 37/331 (11%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
M +L+ G G VG +L G+ ++ LD + + GD
Sbjct: 1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKEF--------------------CGD 39
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
++ + + + +++ AA V A P+ N +
Sbjct: 40 FSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNA--TSVEAIAKAANETGA 97
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFF 298
+V S+ V+ +P+ E P ++Y TK AGE+ + +
Sbjct: 98 WVVHYSTDYVFPGTGDIPWQE-TDATSPLNVYGKTKLAGEKALQDNCPKHL-IFRTSWVY 155
Query: 299 TVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358
G M + L +A + V
Sbjct: 156 AGKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHL 215
Query: 359 STGSGGKKRGPAQLRVYNLGNTS-PVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTH 417
G A L + + L ++ + T A + P +
Sbjct: 216 VAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASR-----PG-----NSR 265
Query: 418 ANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 448
N ++F G+++ + +
Sbjct: 266 LNTEKFQRNFDLIL-PQWELGVKRMLTEMFT 295
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 6e-09
Identities = 36/217 (16%), Positives = 64/217 (29%), Gaps = 28/217 (12%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGD 178
+ + GA G G + G V L +S + + D
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPS---EGPRPAHVVVGDVLQAAD 60
Query: 179 LNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP 238
++ V+ L N S G N++ K+
Sbjct: 61 VDKTV--------AGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDK 105
Query: 239 SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTY-NHIYGLALTGLRF 297
+V +S+ + T+VP TD ++ +++G + HI LTG
Sbjct: 106 -VVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRESGLKYVAVMPPHIGDQPLTGAYT 164
Query: 298 FTVYGPWG-----RPDMAYFFF---TKDILQGKTIDV 326
T+ G + D+ +F T D G +
Sbjct: 165 VTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGHSTYP 201
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 52.7 bits (125), Expect = 3e-08
Identities = 39/291 (13%), Positives = 64/291 (21%), Gaps = 51/291 (17%)
Query: 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179
T+ V GA G G+ G V + ++L V + +G L
Sbjct: 5 TIAVVGATGRQGASLIRVAAAVGHHVRAQVH-----SLK-GLIAEELQAIPNVTLFQGPL 58
Query: 180 NDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPS 239
+ L G A N S IA +L + K
Sbjct: 59 LNNVPLMD-------------TLFEGAHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQH 105
Query: 240 IVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFT 299
++ S A A + Y GL T +
Sbjct: 106 YIY---------------SSMPDHSLYGPWPAVPMWAPKFTVENYVRQLGLPSTFVYAGI 150
Query: 300 VYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGAL-DTAGK 358
+ F D DV + D K
Sbjct: 151 YNNNFTSLPYPLFQMELMPDGTFEWHAPFDPDIP--LPWLDAEHDVGPALLQIFKDGPQK 208
Query: 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR 409
G L + ++ + LN + +++P+
Sbjct: 209 WNG-----------HRIALT-FETLSPVQVCAAFSRALNRRVT--YVQVPK 245
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (110), Expect = 3e-06
Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 20/191 (10%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE 176
NG LVTGAA +G + AL +G V +D +N K A + + + ++
Sbjct: 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVD-WNLEAGVQCKAALHEQFEPQKTLFIQ 60
Query: 177 GDLNDAPLLTKLFDVVP--FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC--- 231
D+ D L F V F + L AGV +N + + N+ ++ +
Sbjct: 61 CDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNN-EKNWEKTLQINLVSVISGTYLGLDY 119
Query: 232 --KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYG 289
K + I+ SS +Y A+K +
Sbjct: 120 MSKQNGGEGGIIINMSSLA-----------GLMPVAQQPVYCASKHGIVGFTRSAALAAN 168
Query: 290 LALTGLRFFTV 300
L +G+R +
Sbjct: 169 LMNSGVRLNAI 179
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 44.6 bits (105), Expect = 1e-05
Identities = 31/208 (14%), Positives = 71/208 (34%), Gaps = 13/208 (6%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
R +G ++TG +G + + G V+ + ++A + + Q+
Sbjct: 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGR----HSDVGEKAAKSVGTPDQIQF 58
Query: 175 VEGDLNDAPLLTKLFDVV-----PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLE 229
+ D +D TKLFD P + +++ A A + + + +A ++ +
Sbjct: 59 FQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVF 118
Query: 230 VCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYG 289
+ I + + + E D Y A+K A ++ +
Sbjct: 119 FGT----RLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCA 174
Query: 290 LALTGLRFFTVYGPWGRPDMAYFFFTKD 317
L +R TV+ + + + +
Sbjct: 175 LKDYDVRVNTVHPGYIKTPLVDDLPGAE 202
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 44.2 bits (104), Expect = 1e-05
Identities = 37/239 (15%), Positives = 76/239 (31%), Gaps = 4/239 (1%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
R + TV++TG++ +G ++ + G V + + + + + + + QV
Sbjct: 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNS 61
Query: 175 VEGDLNDAPLLTKLFDVVP--FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC- 231
V D+ ++ + F + L AG + I + L++
Sbjct: 62 VVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNL 121
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
++V V + G V + QP LY A KA +T + LA
Sbjct: 122 QAVIEMTKKVKPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAA-LDQYTRSTAIDLA 180
Query: 292 LTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350
G+R +V D K + + + + + +
Sbjct: 181 KFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIIL 239
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 43.6 bits (102), Expect = 2e-05
Identities = 41/228 (17%), Positives = 75/228 (32%), Gaps = 10/228 (4%)
Query: 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH-QV 172
++ NG LVTGA G +G +L L + G + LD +L++A + +K +
Sbjct: 1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLD----MNREALEKAEASVREKGVEA 56
Query: 173 FIVEGDLNDAPLLTKLF-DVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC 231
D+ + VV + P S+ V + V
Sbjct: 57 RSYVCDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVT 116
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLA 291
+ + ++ + YG + + Y +K A + T LA
Sbjct: 117 GAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAIIALTETAAL--DLA 174
Query: 292 LTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339
+R + + P + + LQ K Y + D + VA+
Sbjct: 175 PYNIRVNAISPGYMGPGFMWERQVE--LQAKVGSQYFSTDPKVVAQQM 220
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 42.7 bits (100), Expect = 4e-05
Identities = 30/254 (11%), Positives = 74/254 (29%), Gaps = 10/254 (3%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
R +G +V++TG++ +G ++ K G V + + ++ + + ++
Sbjct: 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINA 60
Query: 175 VEGDLNDAPLLTKLFDVVP--FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV-C 231
V D+ +A + + F + L A + + + + + ++
Sbjct: 61 VVADVTEASGQDDIINTTLAKFGKIDILVNNA--GANLADGTANTDQPVELYQKTFKLNF 118
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPA-SLYAATKKAGEEIAHTYNHIYGL 290
++V G V + YA K A +T L
Sbjct: 119 QAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAAL--DQYTRCTAIDL 176
Query: 291 ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350
G+R +V + K ++ + +++ V
Sbjct: 177 IQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIV 236
Query: 351 --GALDTAGKSTGS 362
+ + G
Sbjct: 237 FLADRNLSSYIIGQ 250
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (94), Expect = 3e-04
Identities = 41/243 (16%), Positives = 75/243 (30%), Gaps = 31/243 (12%)
Query: 115 RPN-----GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQK 169
RP LVTGA+G +G+ + AL ++G V+G + L +
Sbjct: 2 RPGMERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIE-ELAAECKSAGYP 60
Query: 170 HQVFIVEGDLNDAPLLTKLFDVVP--FTHVLHLAAQAGV-------RYAMQNPQSYVASN 220
+ DL++ + +F + + V AG+ + + N
Sbjct: 61 GTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVN 120
Query: 221 IAGFVNLLEVC-----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275
+ + I+ +S S + + +P Y+ATK
Sbjct: 121 VLALSICTREAYQSMKERNVDDGHIININSMSGHRV---LPL-------SVTHFYSATKY 170
Query: 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQ-GKTIDVYKTQDDRE 334
A + A T +R + A+ KD + T + K +
Sbjct: 171 AVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPED 230
Query: 335 VAR 337
VA
Sbjct: 231 VAE 233
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.3 bits (94), Expect = 3e-04
Identities = 35/254 (13%), Positives = 71/254 (27%), Gaps = 8/254 (3%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
R ++TG++ +G ++ + G V + + ++ + + V
Sbjct: 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNS 61
Query: 175 VEGDLNDAPLLTKLFDVVP--FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV-C 231
V D+ ++ F + L AG ++ A +I + L +
Sbjct: 62 VVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNL 121
Query: 232 KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP-ASLYAATKKAGEEIAHTYNHIYGL 290
+SV SS G + S P Y+ K A ++ L
Sbjct: 122 RSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAI--DL 179
Query: 291 ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCV 350
G+R ++ + K T + A D+ +
Sbjct: 180 IQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIA 239
Query: 351 --GALDTAGKSTGS 362
T+ G
Sbjct: 240 FLADRKTSSYIIGH 253
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 39.4 bits (90), Expect = 4e-04
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 5/34 (14%)
Query: 112 TPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGV 145
TP+R VL+ GA G G H +
Sbjct: 1 TPKR-----VLLAGATGLTGEHLLDRILSEPTLA 29
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 39.2 bits (91), Expect = 5e-04
Identities = 34/198 (17%), Positives = 60/198 (30%), Gaps = 11/198 (5%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH--QVFI 174
G LVTG + +G + L + G V+ A QKL +K+ +
Sbjct: 4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASR----NLEEASEAAQKLTEKYGVETMA 59
Query: 175 VEGDLNDAPLLTKLFDVVP--FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCK 232
D+++ + KL + V F + + AG+ ++P + V + +
Sbjct: 60 FRCDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGI--NRRHPAEEFPLDEFRQVIEVNLFG 117
Query: 233 SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLAL 292
+ S + P A K G + T
Sbjct: 118 TYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGG-VASLTKALAKEWGR 176
Query: 293 TGLRFFTVYGPWGRPDMA 310
G+R + W R M
Sbjct: 177 YGIRVNVIAPGWYRTKMT 194
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 39.2 bits (90), Expect = 5e-04
Identities = 35/205 (17%), Positives = 60/205 (29%), Gaps = 28/205 (13%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
+P G TVLVTG G VG + L +RG L L + + +L
Sbjct: 7 KPTG-TVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTT 65
Query: 175 VEGDLND---------APLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFV 225
V + + F L + + + + G
Sbjct: 66 VAACDVTDRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGAR 125
Query: 226 NLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYN 285
NL E+ + ++ ++++S +S +G YA + +A
Sbjct: 126 NLHELTRELDLTAFVLFSSFASAFGAPGLGG-------------YAPGNAYLDGLAQQRR 172
Query: 286 HIYGLALTGLRFFTVYGPWGRPDMA 310
A +G W MA
Sbjct: 173 SDGLPATA-----VAWGTWAGSGMA 192
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.2 bits (91), Expect = 5e-04
Identities = 39/193 (20%), Positives = 59/193 (30%), Gaps = 12/193 (6%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
G+ LVTGA +G AL G V+ + + + + V
Sbjct: 5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTR-------TNSDLVSLAKECPGIEPVCV 57
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237
DL D K + +L A + + A + + VNL V + Q
Sbjct: 58 DLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLE-VTKEAFDRSFSVNLRSVFQVS--Q 114
Query: 238 PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRF 297
+ V G V +H T Y++TK A T L +R
Sbjct: 115 MVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGA--MTMLTKAMAMELGPHKIRV 172
Query: 298 FTVYGPWGRPDMA 310
+V DM
Sbjct: 173 NSVNPTVVLTDMG 185
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 6e-04
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 119 MTVLVTGAAGFVGSHCSLALKKRGDGV 145
+V + GA+G G + ++G
Sbjct: 15 KSVFILGASGETGRVLLKEILEQGLFS 41
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 38.1 bits (88), Expect = 0.001
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI 174
R ++TG AG +G + + G V+ D D ++ + +
Sbjct: 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIAD----IADDHGQKVCNNIGSPDVISF 58
Query: 175 VEGDLNDAPLLTKLFD 190
V D+ + L D
Sbjct: 59 VHCDVTKDEDVRNLVD 74
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 37.8 bits (87), Expect = 0.002
Identities = 21/167 (12%), Positives = 48/167 (28%), Gaps = 6/167 (3%)
Query: 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH-- 170
P G +TG +G + L G + LK +++ +
Sbjct: 20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASR----KMDVLKATAEQISSQTGN 75
Query: 171 QVFIVEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEV 230
+V ++ D+ D ++ + +P ++ N + + +
Sbjct: 76 KVHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVL 135
Query: 231 CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAG 277
+ I + G + T + +A+ KAG
Sbjct: 136 NGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAG 182
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 37.5 bits (86), Expect = 0.002
Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 7/196 (3%)
Query: 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKH--QVFI 174
G +VTG+ +G + AL +G ++ ++ +++ R L +H +V
Sbjct: 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA---AEIEKVRAGLAAQHGVKVLY 59
Query: 175 VEGDLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV 234
DL+ + L D + + L +
Sbjct: 60 DGADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVF 119
Query: 235 NPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTG 294
+ + + +G + + S Y A K + T A G
Sbjct: 120 HGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHG--VVGFTKVTALETAGQG 177
Query: 295 LRFFTVYGPWGRPDMA 310
+ + W R +
Sbjct: 178 ITANAICPGWVRTPLV 193
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Score = 36.5 bits (84), Expect = 0.003
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 112 TPRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLD 149
T + + V+GAAG + +H L V G D
Sbjct: 18 TKSWKKLVNIAVSGAAGMISNHLLFKLASG--EVFGQD 53
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.7 bits (84), Expect = 0.003
Identities = 23/177 (12%), Positives = 52/177 (29%), Gaps = 18/177 (10%)
Query: 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG 177
VLV G G +GS C A + R V +D + + + +++ F +
Sbjct: 2 ARRVLVYGGRGALGSRCVQAFRARNWWVASID-----VVENEEASASVIVKMTDSFTEQA 56
Query: 178 DLNDAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNP-----QSYVASNIAGFVNL--LEV 230
D A + KL +L +A A +I L
Sbjct: 57 DQVTA-EVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLAT 115
Query: 231 CKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI 287
+ + +++ G + + + +++ + + + +
Sbjct: 116 KHLKEGGLLTLAGAKAALDGTPGMIGYGMAK-----GAVHQLCQSLAGKNSGMPSGA 167
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 476 | |||
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.96 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.96 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.94 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.93 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.92 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.91 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.9 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.88 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.88 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.87 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.87 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.87 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.87 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.87 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.87 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.87 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.87 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.87 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.87 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.87 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.86 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.86 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.86 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.86 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.86 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.86 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.86 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.86 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.86 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.86 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.86 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.86 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.85 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.85 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.85 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.85 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.84 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.84 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.84 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.84 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.83 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.83 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.83 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.83 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.83 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.83 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.82 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.82 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.81 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.81 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.81 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.8 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.8 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.8 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.8 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.79 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.79 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.77 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.76 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.76 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.75 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.74 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.73 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.72 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.72 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.69 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.69 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.68 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.64 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.63 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.59 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.56 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.47 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.16 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.21 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.16 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.13 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.88 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.85 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.85 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.84 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.83 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.75 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.73 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.72 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.59 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.55 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.55 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.5 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.48 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.42 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.35 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.33 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.32 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.32 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.27 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.26 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.2 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.16 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.14 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.06 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.05 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.0 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.0 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.98 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.97 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.91 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.81 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.8 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.7 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.65 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.65 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.57 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.57 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 96.54 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.51 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.5 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.5 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.49 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.47 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.45 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.44 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.42 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.41 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.39 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.38 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.35 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.34 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.34 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.33 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.32 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.3 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.3 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.29 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.17 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.15 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 96.14 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.13 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.07 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.05 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.99 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.99 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.91 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.9 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.8 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 95.76 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.74 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.71 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.68 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.68 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.64 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.61 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.6 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 95.56 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 95.44 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 95.4 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.34 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 95.34 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.28 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.21 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 95.06 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.91 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.83 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 94.77 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 94.69 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.69 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 94.65 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 94.63 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.47 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.31 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.3 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.26 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.24 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 94.12 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.01 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.0 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.91 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.91 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.86 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 93.86 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 93.57 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 93.53 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 93.5 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 93.46 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.45 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.39 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 93.15 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.1 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 93.05 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 92.93 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 92.64 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 92.58 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 92.53 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 92.53 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 92.45 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 92.45 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.39 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.26 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.22 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 92.15 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 91.98 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 91.95 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 91.9 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 91.88 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 91.83 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 91.82 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 91.64 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.6 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 91.56 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 91.33 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 91.24 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 91.08 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 90.91 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 90.87 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 90.85 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 90.85 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 90.56 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 90.52 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.39 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 90.26 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 89.99 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 89.99 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 89.95 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 89.95 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 89.79 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 89.61 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 89.61 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 89.45 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 89.42 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 89.15 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 88.9 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 88.76 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 88.63 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 88.47 | |
| d1xk7a1 | 402 | Crotonobetainyl-CoA:carnitine CoA-transferase, Cai | 88.26 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 88.13 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 87.92 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 87.88 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 87.83 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 87.74 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 87.73 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 87.6 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 87.57 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 87.43 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 87.24 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 87.15 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 86.88 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 86.58 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 86.39 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 85.38 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 85.38 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 84.78 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 84.45 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 84.22 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 84.14 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 83.56 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 83.52 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 83.27 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 83.16 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 83.09 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 82.23 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 81.77 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 80.62 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 80.44 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 80.14 |
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=1.3e-49 Score=394.52 Aligned_cols=314 Identities=26% Similarity=0.417 Sum_probs=276.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeE------EEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGV------LGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V------~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
|+||||||+||||++|++.|+++|++| +++++........ .........++.++.+|+.+...+...+...
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRA---NLAPVDADPRLRFVHGDIRDAGLLARELRGV 77 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGG---GGGGGTTCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHh---HhhhhhcCCCeEEEEeccccchhhhcccccc
Confidence 789999999999999999999999854 4444433222111 1112233568999999999999888877765
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHH
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (476)
|+|+|+|+.........++...+++|+.|+.+|+++|++.+++ +|||+||.++||.....+++|+++. .|.+.|+.
T Consensus 78 --d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~-~~I~~Ss~~~yg~~~~~~~~E~~~~-~p~~~Y~~ 153 (322)
T d1r6da_ 78 --DAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWTESSPL-EPNSPYAA 153 (322)
T ss_dssp --CEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBCTTSCC-CCCSHHHH
T ss_pred --ceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCc-eEEEeecceeecCCCCCCCCCCCCC-CCCCHHHH
Confidence 9999999998888888899999999999999999999999986 9999999999999988899999987 79999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHH
Q 011841 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (476)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~ 352 (476)
+|.++|.+++.+.+++++++++|||++||||+...+.+++.+++++..++++.++ +++.+.++|+|++|+|++++.+
T Consensus 154 sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~~~~i~v~---~~g~~~r~~i~v~D~a~ai~~~ 230 (322)
T d1r6da_ 154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLFVTNLLDGGTLPLY---GDGANVREWVHTDDHCRGIALV 230 (322)
T ss_dssp HHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHHHHHHHTTCCEEEE---TTSCCEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHHHHHHHcCCCcEEe---cCCCeEEccEEHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888899999999999999998 7899999999999999999999
Q ss_pred HhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCcc
Q 011841 353 LDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPT 432 (476)
Q Consensus 353 l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~ 432 (476)
++++... ++||+++++++++.|+++.+.+.+|.+........+..++.....+|++|+++.|||+|+
T Consensus 231 ~~~~~~~-------------~~~ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~ 297 (322)
T d1r6da_ 231 LAGGRAG-------------EIYHIGGGLELTNRELTGILLDSLGADWSSVRKVADRKGHDLRYSLDGGKIERELGYRPQ 297 (322)
T ss_dssp HHHCCTT-------------CEEEECCCCEEEHHHHHHHHHHHHTCCGGGEEEECCCTTCCCBCCBCCHHHHHHHCCCCC
T ss_pred HhCCCCC-------------CeeEEeecccchhHHHHHHHHHHhCCCccceeecCCCCCCCceeeeCHHHHHHHHCCCCC
Confidence 9987642 899999999999999999999999998776666666677777888999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHcCCCCc
Q 011841 433 TDLAAGLRKFVKWYVSYYGIQPR 455 (476)
Q Consensus 433 ~~l~e~l~~~v~~~~~~~~~~~~ 455 (476)
++++|+|+++++||+++.+-++.
T Consensus 298 ~~~eegI~~~i~w~~~n~~~~~~ 320 (322)
T d1r6da_ 298 VSFADGLARTVRWYRENRGWWEP 320 (322)
T ss_dssp SCHHHHHHHHHHHHHHCHHHHGG
T ss_pred CCHHHHHHHHHHHHHHhHHhHhh
Confidence 99999999999999987654433
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.5e-49 Score=395.95 Aligned_cols=316 Identities=22% Similarity=0.243 Sum_probs=255.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchH-HHHHH-hhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSL-KRARQ-KLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~-~~~~~-~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|+|||||||||||++|+++|+++|++|++++|......... +.... ......+++++++|++|.+++.++++++++|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 78999999999999999999999999999999654332211 11111 12234589999999999999999999999999
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCC--eEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP--SIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~--~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (476)
|||+|+..+...+.+++..++++|+.||.+|+++|++.++++ +|||+||++|||.....+++|+++. .|.++|+.+|
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~-~P~~~Y~~sK 160 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPF-YPRSPYAVAK 160 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCC-CCCSHHHHHH
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCC-CCCChHHHHH
Confidence 999999988888889999999999999999999999887643 7999999999998888899999987 7899999999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCc---HHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHH
Q 011841 275 KAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (476)
Q Consensus 275 ~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~ 351 (476)
+++|.+++.++++++++++++||++||||+...+.. +..++..+..++...+.. |++++.++|+|++|+|++++.
T Consensus 161 ~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~--g~~~~~r~~~~v~D~~~a~~~ 238 (357)
T d1db3a_ 161 LYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL--GNMDSLRDWGHAKDYVKMQWM 238 (357)
T ss_dssp HHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCCCEEE--SCTTCEECCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCCchHHHHHHHHHHhCCCceEEE--CCCCeeecceeechHHHHHHH
Confidence 999999999999999999999999999997665543 334444555665543332 778999999999999999999
Q ss_pred HHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecC------------------------
Q 011841 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM------------------------ 407 (476)
Q Consensus 352 ~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~------------------------ 407 (476)
++++.. . ++|||++++++|+.|+++.+.+.+|........+.
T Consensus 239 ~~~~~~--~------------~~yni~sg~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (357)
T d1db3a_ 239 MLQQEQ--P------------EDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVII 304 (357)
T ss_dssp TTSSSS--C------------CCEEECCCCCEEHHHHHHHHHHTTTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEE
T ss_pred HHhCCC--C------------CeEEECCCCceehHHHHHHHHHHhCCccccccccccccchhhhhhcccccccccCceeE
Confidence 987642 2 78999999999999999999999986543221110
Q ss_pred ------CCCCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 408 ------PRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 408 ------~~~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
.+..+.....+|++|++++|||+|+++|+|+|+++++++.+..+
T Consensus 305 ~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~~~k 354 (357)
T d1db3a_ 305 AVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLEAAK 354 (357)
T ss_dssp EECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred eeccccCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 02234455678999999999999999999999999988877643
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=1.8e-48 Score=392.82 Aligned_cols=314 Identities=23% Similarity=0.399 Sum_probs=263.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEE-EeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLG-LDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~-~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
|+||||||+||||++|+++|++.|++|++ +++....... ..........+++++++|++|.+.+.++++..++|+|
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~V 77 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNL---ESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAV 77 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCG---GGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccH---HHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEE
Confidence 78999999999999999999999998555 4443322111 1122334456899999999999999999998889999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC--------CeEEEecCccccCCCCCC---------CCCCC
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--------PSIVWASSSSVYGLNTQV---------PFSES 260 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~--------~~~V~~SS~~vyg~~~~~---------~~~E~ 260 (476)
||+||..+...+..++..++++|+.|+.+++++|++.++. ++||++||.++||..... +..++
T Consensus 78 ihlAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e 157 (361)
T d1kewa_ 78 MHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTE 157 (361)
T ss_dssp EECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCT
T ss_pred EECccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCccc
Confidence 9999998888888999999999999999999999876532 389999999999865432 22333
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
+.+..|.+.|+.+|.++|.++..+.+.+++++++|||++||||++..+.+++.+++.+..|+++.++ +++++.++|+
T Consensus 158 ~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~~v~---g~g~~~r~~i 234 (361)
T d1kewa_ 158 TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIY---GKGDQIRDWL 234 (361)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCEEEE---TTSCCEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCcEEe---CCCCeEEeCE
Confidence 3344789999999999999999999999999999999999999988888889999999999999998 7899999999
Q ss_pred eHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccce-------eecCCCCCCC
Q 011841 341 YIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKH-------VIRMPRNGDV 413 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~-------~~~~~~~~~~ 413 (476)
|++|+|++++.++++.... ++|||+++.++++.|+++.+.+.++...... .......++.
T Consensus 235 ~v~D~a~ai~~~~~~~~~~-------------~~~Ni~s~~~~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (361)
T d1kewa_ 235 YVEDHARALHMVVTEGKAG-------------ETYNIGGHNEKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHD 301 (361)
T ss_dssp EHHHHHHHHHHHHHHCCTT-------------CEEEECCCCEEEHHHHHHHHHHHHHHHSCCSSCGGGGEEEECCCTTCC
T ss_pred EHHHHHHHHHHHHhcCCCC-------------CeEEECCCCCcchHHHHhHhhhhcccccccccCcccceeecCCCCCCC
Confidence 9999999999999987542 8999999999999999999998875432211 1112234667
Q ss_pred CcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 414 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 414 ~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
....+|++|++++|||+|+++++|+|+++++||+++..
T Consensus 302 ~~~~~d~~k~~~~lgw~P~~~l~e~i~~ti~w~~~n~~ 339 (361)
T d1kewa_ 302 RRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQ 339 (361)
T ss_dssp CBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHCHH
T ss_pred ceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHH
Confidence 77889999999999999999999999999999998754
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.1e-47 Score=377.89 Aligned_cols=320 Identities=25% Similarity=0.404 Sum_probs=271.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||++|++.|+++|++|++++|.........+.. +.....++.++++|++|.+.+.++++..++|+||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vi 78 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI--ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVI 78 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHH--HHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHH--HhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEE
Confidence 78999999999999999999999999999998666544433322 2234458999999999999999999988889999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+||....+++.++++..+++|+.|+.+|+++|++.+++ +||++||.++|+.....+..|+++...|.+.|+.+|.++|
T Consensus 79 HlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~-~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e 157 (338)
T d1udca_ 79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVE 157 (338)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHH
T ss_pred ECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCC-EEEecCcceEEccccccccccccccCCCcchHHHHHhhhh
Confidence 999998888888999999999999999999999999986 9999999999998888888888877789999999999999
Q ss_pred HHHHHHHHH-hCCcEEEEeeCcccCCCCCC----------CCcHHHHHHHHHc-CCceEEEee---CCCCceeEeceeHH
Q 011841 279 EIAHTYNHI-YGLALTGLRFFTVYGPWGRP----------DMAYFFFTKDILQ-GKTIDVYKT---QDDREVARDFTYID 343 (476)
Q Consensus 279 ~~~~~~~~~-~gi~~~ilRp~~v~G~~~~~----------~~~~~~~~~~~~~-g~~~~~~~~---~~~~~~~~~~v~v~ 343 (476)
.++.++... .+++++++|+++||||+... +.+++.+...+.. +.++.+++. ..++.+.++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~ 237 (338)
T d1udca_ 158 QILTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVM 237 (338)
T ss_dssp HHHHHHHHHSTTCEEEEEEECEEECCCTTSSSCCCCCSSCCSHHHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHH
T ss_pred HHHHHHHhhccCCeEEEEeeccEEeccCCCCCCCCccccHHHHHHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEe
Confidence 999977665 48999999999999985432 2355556655554 446777621 12377899999999
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHH
Q 011841 344 DVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLA 423 (476)
Q Consensus 344 Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka 423 (476)
|++.++..+........+. ++||++++.++++.|+++.+.+.+|.+.++...+. ..++.....+|++|+
T Consensus 238 D~~~~~~~~~~~~~~~~~~----------~i~Ni~~~~~~si~e~~~~i~~~~g~~~~~~~~~~-~~~~~~~~~~d~~k~ 306 (338)
T d1udca_ 238 DLADGHVVAMEKLANKPGV----------HIYNLGAGVGNSVLDVVNAFSKACGKPVNYHFAPR-REGDLPAYWADASKA 306 (338)
T ss_dssp HHHHHHHHHHHHHTTCCEE----------EEEEESCSSCEEHHHHHHHHHHHHTSCCCEEEECC-CTTCCSBCCBCCHHH
T ss_pred ehhhhccccccccccccCc----------ceeeecCCCCCcHHHHHHHHHHHHCCCCceEECCC-CCCCCCEeeECHHHH
Confidence 9999998888776554321 89999999999999999999999999888776664 356677788999999
Q ss_pred HHhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 424 YKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 424 ~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
+++|||+|+++++|+|+++++||+++++.
T Consensus 307 ~~~lgwkp~~~l~egi~~ti~w~~~~~~~ 335 (338)
T d1udca_ 307 DRELNWRVTRTLDEMAQDTWHWQSRHPQG 335 (338)
T ss_dssp HHHHCCCCCCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCCcCCCHHHHHHHHHHHHHhchhh
Confidence 99999999999999999999999998763
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=4.5e-47 Score=379.08 Aligned_cols=318 Identities=31% Similarity=0.461 Sum_probs=274.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.+.|+|||||||||||++|+++|+++|++|++++|................ .....++++.+|+.|...+.......
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~- 92 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV- 92 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC-
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc-
Confidence 456899999999999999999999999999999986655544443332221 22357999999999999888887766
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
++|+|+++......+.+++...+++|+.|+.+|+++|++.+++ +|||+||.++||.....|++|+++. .|.+.|+.+
T Consensus 93 -~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~-~p~~~Y~~s 169 (341)
T d1sb8a_ 93 -DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVEDTIG-KPLSPYAVT 169 (341)
T ss_dssp -SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCTTCCC-CCCSHHHHH
T ss_pred -cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCc-eEEEcccceeeCCCCCCCccCCCCC-CCCCcchHH
Confidence 9999999998888888999999999999999999999999986 9999999999999888899998887 899999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGC 349 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 349 (476)
|.++|.+++.+.+.++++++++||++||||+..++ .++..++..++.|+++.++ +++.+.++|+|++|+|.++
T Consensus 170 K~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~~~~~~~~i~~~~~~~~~g~~i~~~---g~g~~~r~~i~v~D~~~a~ 246 (341)
T d1sb8a_ 170 KYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYIN---GDGETSRDFCYIENTVQAN 246 (341)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCCSTTCCHHHHHHHHHHHTCCCEEE---SSSCCEECCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCCCCchhhhHHHHHHHHHcCCceEEc---CCCCEEEEEEEEeccchhh
Confidence 99999999999999999999999999999976543 3567888999999999999 7889999999999999999
Q ss_pred HHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceee----cCCCCCCCCcccccHHHHHH
Q 011841 350 VGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVI----RMPRNGDVPYTHANVSLAYK 425 (476)
Q Consensus 350 ~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~----~~~~~~~~~~~~~d~~ka~~ 425 (476)
..++..+....+ ++||++++..+|+.|+++.+.+.++.+...... .....++..+...|++|+++
T Consensus 247 ~~~~~~~~~~~~-----------~~~~~~~~~~~si~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~ 315 (341)
T d1sb8a_ 247 LLAATAGLDARN-----------QVYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAK 315 (341)
T ss_dssp HHHHTCCGGGCS-----------EEEEESCSCCEEHHHHHHHHHHHHHHTTCCCCCCCEEECCCTTCCSBCCBCCHHHHH
T ss_pred hhhhhccccccc-----------eeeeecccccchHHHHHHHHHHHhccccccccccccccCCCCCCcCeeeeCHHHHHH
Confidence 999987654433 899999999999999999999999865321111 11224566777899999999
Q ss_pred hcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 426 DFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 426 ~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
+|||+|+++++++|+++++||+++++
T Consensus 316 ~LGw~p~~sl~~gi~~ti~wy~~~~k 341 (341)
T d1sb8a_ 316 LLGYAPKYDVSAGVALAMPWYIMFLK 341 (341)
T ss_dssp HTCCCCCCCHHHHHHHHHHHHHHHTC
T ss_pred HHCCCcCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999874
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-48 Score=380.68 Aligned_cols=303 Identities=25% Similarity=0.402 Sum_probs=256.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
.|+||||||+||||++|+++|+++|++|++++|.......... .......+.+...|+. +.++. ++|+|
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~----~~~~~~~~d~~~~~~~-----~~~~~--~~d~V 69 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVE----HWIGHENFELINHDVV-----EPLYI--EVDQI 69 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTG----GGTTCTTEEEEECCTT-----SCCCC--CCSEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHH----HhcCCCceEEEehHHH-----HHHHc--CCCEE
Confidence 3799999999999999999999999999999985543322211 2223335556655554 34554 45999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCC----CCCCCChHHHH
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHR----TDQPASLYAAT 273 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~----~~~p~~~Y~~s 273 (476)
||+|+......+..++...+++|+.|+.+|+++|++.++ ++||+||.+|||.....+..|+.. +..|.++|+.+
T Consensus 70 ihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~s 147 (312)
T d2b69a1 70 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEG 147 (312)
T ss_dssp EECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHH
T ss_pred EECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHH
Confidence 999999887777889999999999999999999999885 799999999999877667666542 23688999999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC--CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~ 351 (476)
|.++|.+++.+++.+|++++++||++||||+...+ .+++.++..+..|+++.++ +++.+.++|+|++|++++++.
T Consensus 148 K~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~~~i~~~i~~~~~g~~i~i~---~~g~~~r~~i~v~D~~~~~~~ 224 (312)
T d2b69a1 148 KRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVY---GSGSQTRAFQYVSDLVNGLVA 224 (312)
T ss_dssp HHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCCCHHHHHHHHHHHTCCEEEE---SSSCCEEECEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCCccHHHHHHHHHHcCCCeEEe---CCCCeeEccEEHHHHHHHHHH
Confidence 99999999999999999999999999999976543 4678899999999999999 788999999999999999999
Q ss_pred HHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCc
Q 011841 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKP 431 (476)
Q Consensus 352 ~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p 431 (476)
+++.... ++||++++..+++.++++++.+.+|.+.++...+.. .++...+.+|++|++++|||+|
T Consensus 225 ~~~~~~~--------------~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lgw~p 289 (312)
T d2b69a1 225 LMNSNVS--------------SPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEA-QDDPQKRKPDIKKAKLMLGWEP 289 (312)
T ss_dssp HHTSSCC--------------SCEEESCCCEEEHHHHHHHHHHHHTCCCCEEEECCC-TTCCCCCCBCCHHHHHHHCCCC
T ss_pred HHhhccC--------------CceEecCCcccchhhHHHHHHHHhCCCCceEECCCC-CCCCCeeeECHHHHHHHHCCCC
Confidence 8865432 789999999999999999999999998887776643 5667788899999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHcC
Q 011841 432 TTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 432 ~~~l~e~l~~~v~~~~~~~~ 451 (476)
+++++|+|+++++||+++++
T Consensus 290 ~~~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 290 VVPLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp CSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999998764
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=2.1e-45 Score=367.70 Aligned_cols=312 Identities=21% Similarity=0.320 Sum_probs=264.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++|+|||||||||||++|+++|+++|++|.+++++...... ...........+++++.+|+.|.+.+.+++... +.
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~--~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~--~~ 76 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG--NKANLEAILGDRVELVVGDIADAELVDKLAAKA--DA 76 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC--CGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTC--SE
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccc--cHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhh--hh
Confidence 36899999999999999999999999986666553211111 111112234568999999999999999999987 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCC------------CCCCCCCCCCCC
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLN------------TQVPFSESHRTD 264 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~------------~~~~~~E~~~~~ 264 (476)
|+|+|+......+..++...+++|+.|+.+|+++|+..+. ++|++||+.+||.. ....+.|+++.
T Consensus 77 v~~~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~--k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~- 153 (346)
T d1oc2a_ 77 IVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNY- 153 (346)
T ss_dssp EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCC-
T ss_pred hhhhhhcccccchhhCcccceeeehHhHHhhhhhhccccc--cccccccceEecccCccccccccccCcccccccCCCC-
Confidence 9999999888878889999999999999999999999985 79999999999842 12244555555
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHH
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDD 344 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~D 344 (476)
.|.+.|+.+|.++|.+++.+++.++++++++||++||||+......+..++..+..+.++.++ +++++.++|+|++|
T Consensus 154 ~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~~~~~~~~i~~~~~~~~~~i~---~~g~~~r~~i~v~D 230 (346)
T d1oc2a_ 154 NPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHIEKFIPRQITNILAGIKPKLY---GEGKNVRDWIHTND 230 (346)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCTTSHHHHHHHHHHHTCCCEEE---TTSCCEEECEEHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCccchhHHHHHHHHcCCceeEe---CCCCccccccchhh
Confidence 788999999999999999999999999999999999999888778888888889999999988 78999999999999
Q ss_pred HHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHH
Q 011841 345 VVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAY 424 (476)
Q Consensus 345 va~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~ 424 (476)
+|++++.+++++... ++||+++++++++.++++.+.+.++.+...........++...+.+|++|++
T Consensus 231 ~a~a~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~ 297 (346)
T d1oc2a_ 231 HSTGVWAILTKGRMG-------------ETYLIGADGEKNNKEVLELILEKMGQPKDAYDHVTDRAGHDLRYAIDASKLR 297 (346)
T ss_dssp HHHHHHHHHHHCCTT-------------CEEEECCSCEEEHHHHHHHHHHHTTCCTTCSEEECCCTTCCCBCCBCCHHHH
T ss_pred HHHHHHHHHhhcccC-------------ccccccccccccchHHHHHHHHHhCCCCcceEECCCCCCCCceeeeCHHHHH
Confidence 999999998877654 7899999999999999999999999865544444445566667779999999
Q ss_pred HhcCCCccc-CHHHHHHHHHHHHHHHcC
Q 011841 425 KDFGYKPTT-DLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 425 ~~LG~~p~~-~l~e~l~~~v~~~~~~~~ 451 (476)
++|||+|++ +|+|+|+++++||+++..
T Consensus 298 ~~LGw~P~~t~l~e~i~~ti~w~~~n~~ 325 (346)
T d1oc2a_ 298 DELGWTPQFTDFSEGLEETIQWYTDNQD 325 (346)
T ss_dssp HHHCCCCSCCCHHHHHHHHHHHHHHTHH
T ss_pred HHHCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 999999997 699999999999998653
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=5.3e-45 Score=360.24 Aligned_cols=311 Identities=23% Similarity=0.225 Sum_probs=264.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|||||||||||++|+++|+++||+|++++|....... .+ .......++++++.+|+.|.+.+.+++....+++++
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~--~~-l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 77 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR--WR-LRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVY 77 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC--HH-HHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccH--HH-HHHhcccCCcEEEEccccChHHhhhhhccccccccc
Confidence 689999999999999999999999999999997654322 11 122223458999999999999999999988889999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+|+.........++..++..|+.|+.+++++|++.+.+.+|++.||..+||.....+.+|+++. .|.+.|+.+|.++|
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~-~p~~~Y~~sK~~~E 156 (321)
T d1rpna_ 78 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPF-YPRSPYGVAKLYGH 156 (321)
T ss_dssp ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCC-CCCSHHHHHHHHHH
T ss_pred cccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCc-cccChhHHHHHHHH
Confidence 99999888888889999999999999999999999998878999999999998888888888877 89999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCc---HHHHHHHHHcCC-ceEEEeeCCCCceeEeceeHHHHHHHHHHHHh
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMA---YFFFTKDILQGK-TIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~---~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~ 354 (476)
.++.++.+.++++++++||+++|||....+.. +..++.++..++ +...+ +++++.++|+|++|+|++++.+++
T Consensus 157 ~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~i~~---g~g~~~r~~i~v~D~~~~~~~~~~ 233 (321)
T d1rpna_ 157 WITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRL---GNVDAKRDWGFAGDYVEAMWLMLQ 233 (321)
T ss_dssp HHHHHHHHHHCCCEEEEEECCEECTTSCTTSHHHHHHHHHHHHHTTSCSCEEE---SCTTCEEECEEHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcEEEEEEecccCCCccccccHHHHHHHHHHHHhCCCCcEEE---CCCCeEEccEEeHHHHHHHHHHHh
Confidence 99999999999999999999999997665543 234445555554 44445 778999999999999999999998
Q ss_pred hcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCC---CCCCCCcccccHHHHHHhcCCCc
Q 011841 355 TAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP---RNGDVPYTHANVSLAYKDFGYKP 431 (476)
Q Consensus 355 ~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~---~~~~~~~~~~d~~ka~~~LG~~p 431 (476)
++.. +.||+++++.+++.++++.+.+.+|.+.+......+ +.++......|++|++++|||+|
T Consensus 234 ~~~~--------------~~~ni~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P 299 (321)
T d1rpna_ 234 QDKA--------------DDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKP 299 (321)
T ss_dssp SSSC--------------CCEEECCSCEEEHHHHHHHHHHTTTCCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCC
T ss_pred cCCc--------------CCceecccccceehhhhHHHHHHhCCCccceeecCCCCCCCCccCCccCCHHHHHHHHCCCc
Confidence 8653 679999999999999999999999987544433322 23566677889999999999999
Q ss_pred ccCHHHHHHHHHHHHHHHc
Q 011841 432 TTDLAAGLRKFVKWYVSYY 450 (476)
Q Consensus 432 ~~~l~e~l~~~v~~~~~~~ 450 (476)
+++|+|+|+++++||++..
T Consensus 300 ~~~l~e~i~~tv~~~l~~~ 318 (321)
T d1rpna_ 300 RTSLDELIRMMVEADLRRV 318 (321)
T ss_dssp CSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998753
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.9e-44 Score=356.40 Aligned_cols=321 Identities=28% Similarity=0.421 Sum_probs=266.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc----hHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP----SLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~----~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
|+|||||||||||++|+++|+++|++|++++|....... .............++.++.+|++|.+.+.+++....+
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 82 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF 82 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccccc
Confidence 689999999999999999999999999999864433211 1111122233456899999999999999999999988
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATK 274 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK 274 (476)
++++|+||..+...+..++...++.|+.|+.+++++|++.+++ +|||+||+.+|+........++.....+.++|+.+|
T Consensus 83 ~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~-~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~~k 161 (346)
T d1ek6a_ 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSK 161 (346)
T ss_dssp EEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHHH
T ss_pred ccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcc-cccccccceeeeccccccccccccccccCChHHHHH
Confidence 9999999998888888999999999999999999999999997 999999999999887766666666667889999999
Q ss_pred HHHHHHHHHHHHH-hCCcEEEEeeCcccCCCCC----------CCCcHHHHHHHHH-cCCceEEEee---CCCCceeEec
Q 011841 275 KAGEEIAHTYNHI-YGLALTGLRFFTVYGPWGR----------PDMAYFFFTKDIL-QGKTIDVYKT---QDDREVARDF 339 (476)
Q Consensus 275 ~~~E~~~~~~~~~-~gi~~~ilRp~~v~G~~~~----------~~~~~~~~~~~~~-~g~~~~~~~~---~~~~~~~~~~ 339 (476)
..+|..++++.+. .+++.+++|++.+|||... .+..++.+...+. ++.++.++.. ..++.+.+||
T Consensus 162 ~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdf 241 (346)
T d1ek6a_ 162 FFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241 (346)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECE
T ss_pred HHHHHHHHHHHHhccCCceEEEeecceeccCCCCCcCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeE
Confidence 9999999998765 5899999999999998532 2234555544443 5667777632 1346788999
Q ss_pred eeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCccccc
Q 011841 340 TYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHAN 419 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d 419 (476)
+|++|+|.++..+++....... .++|||++++.+++.|+++.+.+.+|.+.++...+ .+.++.....+|
T Consensus 242 i~v~D~a~~~~~~~~~~~~~~~----------~~i~Ni~~~~~~s~~dl~~~i~~~~~~~~~~~~~~-~~~~e~~~~~~d 310 (346)
T d1ek6a_ 242 IHVVDLAKGHIAALRKLKEQCG----------CRIYNLGTGTGYSVLQMVQAMEKASGKKIPYKVVA-RREGDVAACYAN 310 (346)
T ss_dssp EEHHHHHHHHHHHHHHHTTTCC----------EEEEEECCSCCEEHHHHHHHHHHHHCSCCCEEEEC-CCTTCCSEECBC
T ss_pred EEEEeccchhhhhccccccccC----------ceEEEeCCCCcccHHHHHHHHHHHhCCCCCeEECC-CCCCCCCEeeEC
Confidence 9999999999998877655432 18999999999999999999999999988877655 456778888899
Q ss_pred HHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 420 VSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 420 ~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
++|++++|||+|+++++|+|+++++||+++.+
T Consensus 311 ~~k~~~~lgw~p~~slee~I~~~i~w~~~n~~ 342 (346)
T d1ek6a_ 311 PSLAQEELGWTAALGLDRMCEDLWRWQKQNPS 342 (346)
T ss_dssp CHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHCCCcCCCHHHHHHHHHHHHHhCHh
Confidence 99999999999999999999999999987654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=5.7e-44 Score=359.37 Aligned_cols=305 Identities=23% Similarity=0.318 Sum_probs=256.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.+.|+||||||+||||++|+++|+++||+|++++|....... .......+..+|+.|.+.+.++++++ |
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~--d 81 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT---------EDMFCDEFHLVDLRVMENCLKVTEGV--D 81 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC---------GGGTCSEEEECCTTSHHHHHHHHTTC--S
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh---------hhcccCcEEEeechhHHHHHHHhhcC--C
Confidence 578999999999999999999999999999999986543211 11236678889999999999988866 9
Q ss_pred EEEEccccCChh-hhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCC------CCCCCCCC
Q 011841 196 HVLHLAAQAGVR-YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSES------HRTDQPAS 268 (476)
Q Consensus 196 ~Vi~~Ag~~~~~-~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~------~~~~~p~~ 268 (476)
+|||+|+..... .....+......|+.++.+++++|++.+++ +||++||..+|+.....+..|+ +.+..|.+
T Consensus 82 ~Vih~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~ 160 (363)
T d2c5aa1 82 HVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQD 160 (363)
T ss_dssp EEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSS
T ss_pred eEeecccccccccccccccccccccccchhhHHHHhHHhhCcc-ccccccccccccccccccccccccccccCCcCCCCC
Confidence 999999875543 345778889999999999999999999997 9999999999997765554443 22337889
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC-----CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD-----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
.|+.+|+++|.+++++.+.+|++++++||++||||++... .....+........+...+ +++.+.++|+|++
T Consensus 161 ~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~rd~i~v~ 237 (363)
T d2c5aa1 161 AFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMW---GDGLQTRSFTFID 237 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSSSCCCHHHHHHHHHHHCSSCEEEE---SCSCCEECCEEHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCccccccccccccccccccccccccccc---CCCCeEEEEeehh
Confidence 9999999999999999999999999999999999976432 2234455556667777777 7889999999999
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHH
Q 011841 344 DVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLA 423 (476)
Q Consensus 344 Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka 423 (476)
|++++++.+++.+. + ++||++++..+++.|+++++.+++|.+..+...+.+ .+.....+|++|+
T Consensus 238 D~~~~~~~~~~~~~--~------------~~~ni~~~~~~s~~~l~~~i~~~~g~~~~i~~~~~~--~~~~~~~~d~ska 301 (363)
T d2c5aa1 238 ECVEGVLRLTKSDF--R------------EPVNIGSDEMVSMNEMAEMVLSFEEKKLPIHHIPGP--EGVRGRNSDNNLI 301 (363)
T ss_dssp HHHHHHHHHHHSSC--C------------SCEEECCCCCEEHHHHHHHHHHTTTCCCCEEEECCC--CCCSBCEECCHHH
T ss_pred HHHHHHHHHHhCCC--C------------CeEEEecCCcccHHHHHHHHHHHhCCCCceEeCCCC--CCccccccCHHHH
Confidence 99999999887542 2 789999999999999999999999998877666544 4566677899999
Q ss_pred HHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 424 YKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 424 ~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
+++|||+|+++|+|+|+++++||+++++
T Consensus 302 ~~~LGw~p~~sleegi~~ti~w~~~~~~ 329 (363)
T d2c5aa1 302 KEKLGWAPNMRLKEGLRITYFWIKEQIE 329 (363)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999865
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-44 Score=356.03 Aligned_cols=309 Identities=22% Similarity=0.358 Sum_probs=255.4
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHH-hhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTK-LFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~-~~~~~~~d~ 196 (476)
|+||||||+||||++|+++|+++|+ +|+++++..... ......++++++++|++|.+.+.+ +++++ |+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~--------~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~--d~ 70 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI--------SRFLNHPHFHFVEGDISIHSEWIEYHVKKC--DV 70 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGG--------GGGTTCTTEEEEECCTTTCSHHHHHHHHHC--SE
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcch--------hhhccCCCeEEEECccCChHHHHHHHHhCC--Cc
Confidence 7899999999999999999999994 899998854321 123345689999999998766555 55554 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCC------CCCCCCChH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESH------RTDQPASLY 270 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~------~~~~p~~~Y 270 (476)
|||+|+.........++...+..|+.|+.+++++|.+.+. +++++||..+|+........|.. +...|...|
T Consensus 71 Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~--~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y 148 (342)
T d2blla1 71 VLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRK--RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY 148 (342)
T ss_dssp EEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTC--EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH
T ss_pred cccccccccccccccCCccccccccccccccccccccccc--cccccccccccccccccccccccccccccccCCCcchh
Confidence 9999999888778888999999999999999999999986 68899999999987665554432 233567889
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC--------CCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP--------DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~--------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
+.+|.++|.+++.+.+.+|++++++|++.+|||+... ......++..++.|+++.++ +++++.++|+|+
T Consensus 149 ~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~g~~~r~~i~v 225 (342)
T d2blla1 149 SVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLI---DGGKQKRCFTDI 225 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTCSBSCBCHHHHHHHHHHHHTCCEEEG---GGSCCEEECEEH
T ss_pred hhcccchhhhhhhhhcccCceeEEeeccccccccccccccccccccccchHHHHHHHhCCCcccc---CCCCeeeeeccc
Confidence 9999999999999999999999999999999986432 22467888999999999998 788999999999
Q ss_pred HHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC-cccHHHHHHHHHHHhCCCccceeecCCC------------
Q 011841 343 DDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS-PVPVGRLVSILENLLNTKAKKHVIRMPR------------ 409 (476)
Q Consensus 343 ~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~-~vt~~el~~~l~~~~g~~~~~~~~~~~~------------ 409 (476)
+|+|++++.+++++..... | ++||+++++ .+|+.|+++.+.+.+|.+......+...
T Consensus 226 ~D~~~a~~~~~~~~~~~~~-g---------~~~Nig~~~~~~t~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (342)
T d2blla1 226 RDGIEALYRIIENAGNRCD-G---------EIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYG 295 (342)
T ss_dssp HHHHHHHHHHHHCGGGTTT-T---------EEEEECCTTSEEEHHHHHHHHHHHHHTCTTGGGSCCCCCEEEC-------
T ss_pred ccccceeeeehhhccccCC-C---------eEEEEecccchhHHHHHHHHHHHHhCCCccccccCcccccceeccccccc
Confidence 9999999999998643321 1 899998765 5899999999999999876555444221
Q ss_pred --CCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 410 --NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 410 --~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
..+..+..+|++|++++|||+|+++++|+|+++++||+++.+.
T Consensus 296 ~~~~~~~~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~~~ 340 (342)
T d2blla1 296 KGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (342)
T ss_dssp -----CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred cccccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCcCC
Confidence 1244566789999999999999999999999999999998764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.5e-44 Score=355.76 Aligned_cols=315 Identities=20% Similarity=0.205 Sum_probs=259.3
Q ss_pred CEE-EEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCch-HHHH--HHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 119 MTV-LVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS-LKRA--RQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 119 ~~V-LVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~-~~~~--~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
|+| |||||+||||++|+++|+++||+|++++|..+..... .... ........+++++.+|++|.+.+.+++...++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 467 9999999999999999999999999999976533221 1110 00111134899999999999999999999889
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC--CeEEEecCccccCCCCCCCCCCCCCCCCCCChHHH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ--PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAA 272 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~--~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~ 272 (476)
++|+|+++.........++..++++|+.||.+|+++|++++.. .+|||+||++|||.....+++|+++. .|.++|+.
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~-~P~~~Yg~ 159 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPF-YPRSPYGA 159 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCC-CCCSHHHH
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCC-CCCCHHHH
Confidence 9999999998888888899999999999999999999998764 38999999999998888899999987 79999999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcH----HHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHH
Q 011841 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAY----FFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348 (476)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a 348 (476)
+|.++|++++.+.+.++++++++||+.||||+....... ..+......+.++.++ +++.+.++|+|++|++++
T Consensus 160 sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~~~~~~~~~i~~~~~~~~~~~~~---g~g~~~r~~i~v~D~~~a 236 (347)
T d1t2aa_ 160 AKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSL---GNLDAKRDWGHAKDYVEA 236 (347)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCSCEEE---SCTTCEECCEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCccccccceeeehhhcCCcceeec---CCCcceeeeeEecHHHHH
Confidence 999999999999999999999999999999976655433 3344555567778777 788999999999999999
Q ss_pred HHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCC--------------------
Q 011841 349 CVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP-------------------- 408 (476)
Q Consensus 349 ~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~-------------------- 408 (476)
+..++++... +.|+++.....++.+..+.+...++........+..
T Consensus 237 ~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (347)
T d1t2aa_ 237 MWLMLQNDEP--------------EDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYY 302 (347)
T ss_dssp HHHHHHSSSC--------------CCEEECCSCCEEHHHHHHHHHHHTTCCEEEESCGGGCEEEETTTCCEEEEECGGGS
T ss_pred HHHHhhcCCC--------------ccceeccccccccchhhhhhhhhhcceeeecccchhhhhhhhhcCCceeeecccCC
Confidence 9999988653 568999999999999999999999986433222110
Q ss_pred CCCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 409 RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 409 ~~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
+..+.....+|++|++++|||+|+++++|+|+++++|..+.++
T Consensus 303 rp~~~~~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~~~~~k 345 (347)
T d1t2aa_ 303 RPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMR 345 (347)
T ss_dssp CSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHh
Confidence 1234455668999999999999999999999999988776553
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.2e-43 Score=351.99 Aligned_cols=322 Identities=26% Similarity=0.352 Sum_probs=256.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+||||||+||||++|+++|+++|++|++++|............ ......+++++.+|++|.+.++++++..++|+||
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~--~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 79 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARL--EVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI 79 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHH--HHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhH--HhhcccCCeEEEeecCCHHHHHHHHhccCCCEEE
Confidence 67999999999999999999999999999987665443333322 2333458999999999999999999988999999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCC----CCCCCCCCCCCCCChHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ----VPFSESHRTDQPASLYAATK 274 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~----~~~~E~~~~~~p~~~Y~~sK 274 (476)
|+||...+....+++..+..+|+.++.+|+++|++.+++ +||++||..|||.... .++.|+.+. .|.+.|+.+|
T Consensus 80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~-~~i~~SS~~vyg~~~~~~~~~~~~e~~~~-~p~~~Y~~sK 157 (347)
T d1z45a2 80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPNMIPIPEECPL-GPTNPYGHTK 157 (347)
T ss_dssp ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTTCCSBCTTSCC-CCCSHHHHHH
T ss_pred EccccccccccccCcccccccchhhhHHHHHHHHhcccc-eEEeecceeeecCcccCCCCCccccccCC-CCCChhHhHH
Confidence 999998888888899999999999999999999999987 9999999999996643 356666655 7889999999
Q ss_pred HHHHHHHHHHHHH--hCCcEEEEeeCcccCCCCC----------CCCcHHHHHHHHH-cCCceEEEee---CCCCceeEe
Q 011841 275 KAGEEIAHTYNHI--YGLALTGLRFFTVYGPWGR----------PDMAYFFFTKDIL-QGKTIDVYKT---QDDREVARD 338 (476)
Q Consensus 275 ~~~E~~~~~~~~~--~gi~~~ilRp~~v~G~~~~----------~~~~~~~~~~~~~-~g~~~~~~~~---~~~~~~~~~ 338 (476)
.++|.+++++.+. ++++++++||++|||+... .+.++..+...+. .+.++.+++. ..++...+|
T Consensus 158 ~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d 237 (347)
T d1z45a2 158 YAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRD 237 (347)
T ss_dssp HHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSSCCCCCSSSCCSHHHHHHHHHTTSSSCCCCC------CCSSCEEC
T ss_pred HHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCccCCCccccHHHHHHHHHHHHhcCCCCeEEeCCCccccCCceeee
Confidence 9999999998764 4799999999999997431 2334555554444 3455655521 023456889
Q ss_pred ceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccc
Q 011841 339 FTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHA 418 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 418 (476)
++++.|++.+++.+++........ ....++||++++.++|+.|+++.+.+.+|.+..+...+. ..++.....+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~Ni~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~ 310 (347)
T d1z45a2 238 YIHVVDLAKGHIAALQYLEAYNEN------EGLCREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGR-RAGDVLNLTA 310 (347)
T ss_dssp EEEHHHHHHHHHHHHHHHHHSCTT------CCEEEEEEESCSCCEEHHHHHHHHHHHHTCCCCC----------CCCCCB
T ss_pred eeeeeccccccccccccccccccc------ccccccceecCCCcccHHHHHHHHHHHHCCCCceEeCCC-CCCCCCEeeE
Confidence 999999999999988775433211 112289999999999999999999999999887765554 3466777889
Q ss_pred cHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 419 NVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 419 d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
|++|++++|||+|+++|+|+|+++++||++|..
T Consensus 311 d~sk~~~~lGw~p~~~lee~i~~ti~w~~~np~ 343 (347)
T d1z45a2 311 KPDRAKRELKWQTELQVEDSCKDLWKWTTENPF 343 (347)
T ss_dssp CCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHCCCCCCCHHHHHHHHHHHHHhChh
Confidence 999999999999999999999999999998843
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2e-42 Score=351.78 Aligned_cols=318 Identities=23% Similarity=0.292 Sum_probs=251.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC-------------CCCCchHHH-HHHhhhcCCceEEEEeecCCHH
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN-------------SYYDPSLKR-ARQKLLQKHQVFIVEGDLNDAP 183 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~-------------~~~~~~~~~-~~~~~~~~~~v~~~~~Dl~d~~ 183 (476)
||+|||||||||||++|+++|+++||+|+++|+.. ......... .........+++++.+||+|.+
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 68999999999999999999999999999997311 011111111 1112233468999999999999
Q ss_pred HHHHhhccCCccEEEEccccCChhhhhcC---hHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCC-
Q 011841 184 LLTKLFDVVPFTHVLHLAAQAGVRYAMQN---PQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSE- 259 (476)
Q Consensus 184 ~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~---~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E- 259 (476)
.+.++|++++||+|||+||......+..+ +..++++|+.||.+++++|++.+.+.+|++.||..+|+.... +..|
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~-~~~~~ 159 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEG 159 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CBCSS
T ss_pred HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccc-ccccc
Confidence 99999999999999999998777666555 446789999999999999999998878999999999875432 1111
Q ss_pred ------C------CCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCC-----------------CCc
Q 011841 260 ------S------HRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRP-----------------DMA 310 (476)
Q Consensus 260 ------~------~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~-----------------~~~ 310 (476)
+ ..+..|.+.|+.+|+++|.+++.+.++++++++++||++||||+... ...
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTA 239 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCH
T ss_pred cccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccc
Confidence 1 11347788999999999999999999999999999999999997542 234
Q ss_pred HHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHH
Q 011841 311 YFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVS 390 (476)
Q Consensus 311 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~ 390 (476)
+..+...+..++++.++ +++.+.+||+|++|++++++.+++++...+. +..+|. +++.+++.+|++
T Consensus 240 i~~~~~~~~~~~~~~i~---g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~----------~~~~~~-~~~~~si~el~~ 305 (393)
T d1i24a_ 240 LNRFCVQAAVGHPLTVY---GKGGQTRGYLDIRDTVQCVEIAIANPAKAGE----------FRVFNQ-FTEQFSVNELAS 305 (393)
T ss_dssp HHHHHHHHHHTCCEEEE---TTSCCEEEEEEHHHHHHHHHHHHHSCCCTTC----------EEEEEE-CSEEEEHHHHHH
T ss_pred hhhhhHHhhcCCeeEEe---eecccccccccccchHHHHHHHHHhhcccce----------eeeecC-CCCeeEHHHHHH
Confidence 67888999999999999 8899999999999999999999998766531 023333 446799999999
Q ss_pred HHHHHh---CCCccceeecCCC-CCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHHHcC
Q 011841 391 ILENLL---NTKAKKHVIRMPR-NGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVSYYG 451 (476)
Q Consensus 391 ~l~~~~---g~~~~~~~~~~~~-~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~~~~ 451 (476)
++.++. +.+......+.+. ..+..+...|++|+++ |||+|+++++++++++++|++++..
T Consensus 306 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-LGw~P~~~~~~~i~~~~~~~~~~k~ 369 (393)
T d1i24a_ 306 LVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLME-LGLEPHYLSDSLLDSLLNFAVQFKD 369 (393)
T ss_dssp HHHHHHHTTTCCCCEEEECCSSCSCSSCCCCBCCCHHHH-TTCCCCCCCHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHhhCCCcceeeccCCCCCCCccEecCCHHHHHH-cCCccccCHHHHHHHHHHHHHHHHH
Confidence 998875 4444444444443 3456677789999975 9999999999999999999998864
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.4e-42 Score=345.24 Aligned_cols=316 Identities=23% Similarity=0.228 Sum_probs=254.3
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCch-HHHH--HHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPS-LKRA--RQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~-~~~~--~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
.|+|||||||||||++|++.|+++||+|++++|..+..... .... .........++++.+|+.+.+.+.+.++..++
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~ 80 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP 80 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence 37999999999999999999999999999999965432211 1100 11112245789999999999999999998899
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcC----CCCeEEEecCccccCCCCCCCCCCCCCCCCCCChH
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVN----PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLY 270 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~----~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y 270 (476)
|+|||+|+........+++...+..|+.++.+++++|++.. ...++++.||+.+|+... .+++|+++. .|.+.|
T Consensus 81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~-~~~~E~~~~-~p~~~Y 158 (339)
T d1n7ha_ 81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP-PPQSETTPF-HPRSPY 158 (339)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC-SSBCTTSCC-CCCSHH
T ss_pred chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC-CCCCCCCCC-CCcchh
Confidence 99999999988777778999999999999999999987532 223688888888876654 478888876 899999
Q ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHH---HHHH-HcCCceEEEeeCCCCceeEeceeHHHHH
Q 011841 271 AATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFF---TKDI-LQGKTIDVYKTQDDREVARDFTYIDDVV 346 (476)
Q Consensus 271 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~---~~~~-~~g~~~~~~~~~~~~~~~~~~v~v~Dva 346 (476)
+.+|.++|.++..+.+.++++++++||++||||+...+.....+ +... ....+..+. +++.+.++|+|++|+|
T Consensus 159 ~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~~~~i~~~~~~~~~~~~~~~~~---g~~~~~rd~~~v~D~a 235 (339)
T d1n7ha_ 159 AASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFVTRKITRALGRIKVGLQTKLFL---GNLQASRDWGFAGDYV 235 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSHHHHHHHHHHHHHHTSCCCEEE---SCTTCEEECEEHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCCcchhhHHHHHHhcCCCCeEEe---CCCCccccceeeehHH
Confidence 99999999999999999999999999999999987665543322 2233 334445555 6789999999999999
Q ss_pred HHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecC---CCCCCCCcccccHHHH
Q 011841 347 KGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM---PRNGDVPYTHANVSLA 423 (476)
Q Consensus 347 ~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~---~~~~~~~~~~~d~~ka 423 (476)
++++.+++++.. ..+++..+...++.++++.+.+.+|.+........ -+..+......|++|+
T Consensus 236 ~~~~~~~~~~~~--------------~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~~Ka 301 (339)
T d1n7ha_ 236 EAMWLMLQQEKP--------------DDYVVATEEGHTVEEFLDVSFGYLGLNWKDYVEIDQRYFRPAEVDNLQGDASKA 301 (339)
T ss_dssp HHHHHHHTSSSC--------------CEEEECCSCEEEHHHHHHHHHHHTTCCGGGTEEECGGGSCSSCCCBCCBCCHHH
T ss_pred HHHHHHHhcCCC--------------CccccccccccccchhhhhhhhhhhcccCceeeeccCCCCCCCCCeeeECHHHH
Confidence 999999998654 55777788899999999999999998754433221 2345666777899999
Q ss_pred HHhcCCCcccCHHHHHHHHHHHHHHHcCC
Q 011841 424 YKDFGYKPTTDLAAGLRKFVKWYVSYYGI 452 (476)
Q Consensus 424 ~~~LG~~p~~~l~e~l~~~v~~~~~~~~~ 452 (476)
+++|||+|+++++|+|+++++||++..+.
T Consensus 302 k~~LGw~P~~~le~gi~~ti~~~~~~~~~ 330 (339)
T d1n7ha_ 302 KEVLGWKPQVGFEKLVKMMVDEDLELAKR 330 (339)
T ss_dssp HHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCcCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998764
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=6.5e-42 Score=346.96 Aligned_cols=326 Identities=23% Similarity=0.354 Sum_probs=257.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHH-CCCeEEEEeCCCCC-----CCchHHHHHHhh---------hcCCceEEEEeecCCH
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSY-----YDPSLKRARQKL---------LQKHQVFIVEGDLNDA 182 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~-~G~~V~~~~R~~~~-----~~~~~~~~~~~~---------~~~~~v~~~~~Dl~d~ 182 (476)
.|+||||||+||||++|+++|++ .||+|+++|+-... ............ .....+.++.+|++|.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 58999999999999999999986 69999999852211 111112111111 1134689999999999
Q ss_pred HHHHHhhccC-CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCC-------
Q 011841 183 PLLTKLFDVV-PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ------- 254 (476)
Q Consensus 183 ~~l~~~~~~~-~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~------- 254 (476)
+.++++++.. ++|+|||+|+........+++...++.|+.++.+++++|++.+++ +++++||..+|+....
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~ 160 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTMGSVSTNA 160 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC-----CC
T ss_pred HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCc-ccccccccccccccccccccccc
Confidence 9999999865 459999999998888888889999999999999999999999987 9999999999875533
Q ss_pred CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCC---------cHHHHHHHH-------
Q 011841 255 VPFSESHRTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM---------AYFFFTKDI------- 318 (476)
Q Consensus 255 ~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~---------~~~~~~~~~------- 318 (476)
.++.|+++. .|.+.|+.+|..+|.+++++.+.+|++++++||+++|||+...+. .++.++..+
T Consensus 161 ~~~~e~~~~-~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ip~ii~~~~~~~~~~ 239 (383)
T d1gy8a_ 161 EPIDINAKK-SPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMSDIAPD 239 (383)
T ss_dssp CCBCTTSCC-BCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCSTTCCSHHHHHHHHHHHHHSCC
T ss_pred cccccccCC-CCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccccccchhHHHHHHHHHhhcccc
Confidence 345666655 789999999999999999999999999999999999999765432 233333322
Q ss_pred ---------HcCCceEEEee---CCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHH
Q 011841 319 ---------LQGKTIDVYKT---QDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVG 386 (476)
Q Consensus 319 ---------~~g~~~~~~~~---~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~ 386 (476)
..++++.+++. .++|.+.++|+|++|+|++++.+++........ ......++|||++++++++.
T Consensus 240 ~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~----~~~~~~~i~Ni~s~~~~s~~ 315 (383)
T d1gy8a_ 240 QRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPN----DKSKYFSVFNLGTSRGYSVR 315 (383)
T ss_dssp -----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTT----TGGGSEEEEEESCSCCEEHH
T ss_pred ccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhcccccc----ccccCccEEEeCCCCceeHH
Confidence 34566666631 124788899999999999999999876543211 11223389999999999999
Q ss_pred HHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHHhcCCCcccCHHHHHHHH-HHHHHHHc
Q 011841 387 RLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKF-VKWYVSYY 450 (476)
Q Consensus 387 el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~-v~~~~~~~ 450 (476)
|+++++.+.+|.+..+...+. +.++..+...|++|++++|||+|+++++|+|+++ +.||+++.
T Consensus 316 el~~~i~~~~~~~~~~~~~~~-~~~d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~~~ 379 (383)
T d1gy8a_ 316 EVIEVARKTTGHPIPVRECGR-REGDPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRTHP 379 (383)
T ss_dssp HHHHHHHHHHCCCCCEEEECC-CTTCCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHhCCCCceEECCC-CCCCcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHhCc
Confidence 999999999999887776653 4667788889999999999999999999999887 58887753
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-41 Score=334.80 Aligned_cols=299 Identities=20% Similarity=0.304 Sum_probs=247.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
.|+|||||||||||++|+++|+++|+.|+++++.. ..|+.|.+.+.++++..++|+|
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~d~v 58 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-----------------------ELNLLDSRAVHDFFASERIDQV 58 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-----------------------TCCTTCHHHHHHHHHHHCCSEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch-----------------------hccccCHHHHHHHHhhcCCCEE
Confidence 47999999999999999999999999998887532 1689999999999998889999
Q ss_pred EEccccCCh-hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCC----CCCChHHH
Q 011841 198 LHLAAQAGV-RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTD----QPASLYAA 272 (476)
Q Consensus 198 i~~Ag~~~~-~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~----~p~~~Y~~ 272 (476)
+|+|+..+. .....++.++++.|+.||.+|+++|++.+++ +|||+||.+|||.....+++|+.+.. .+.++|+.
T Consensus 59 ~~~a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~-~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~ 137 (315)
T d1e6ua_ 59 YLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAI 137 (315)
T ss_dssp EECCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHH
T ss_pred EEcchhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHH
Confidence 999987543 3455677788999999999999999999987 99999999999988777887765432 34467999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCC---------cHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 273 TKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDM---------AYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 273 sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~---------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
+|.++|++++.+.+++|+++++|||++||||++..+. ....+......+.++.++ +++.+.++|+|++
T Consensus 138 sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~~~~~~~v~ 214 (315)
T d1e6ua_ 138 AKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQKAPDVVVW---GSGTPMREFLHVD 214 (315)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTCSSHHHHHHHHHHHHHHHTCSEEEEE---SCSCCEECEEEHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccccccceeeeccchhhhhccCCceEEc---CCCceEEEEEEee
Confidence 9999999999999999999999999999999765331 123345666778888888 7789999999999
Q ss_pred HHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHH
Q 011841 344 DVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLA 423 (476)
Q Consensus 344 Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka 423 (476)
|+++++..++++....... ........+|++.+...++.++++.+.+.+|.+..+...+. +.++......|++|+
T Consensus 215 d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~i~~~~~-~~~~~~~~~~d~sk~ 289 (315)
T d1e6ua_ 215 DMAAASIHVMELAHEVWLE----NTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDAS-KPDGTPRKLLDVTRL 289 (315)
T ss_dssp HHHHHHHHHHHSCHHHHHH----TSBTTBCCEEESCSCCEEHHHHHHHHHHHHTCCSEEEEETT-SCCCCSBCCBCCHHH
T ss_pred hhHHHHHHhhhhccccccc----cccccccccccCCCcchHHHHHHHHHHHHhCCCcceEECCC-CCCCCceeccCHHHH
Confidence 9999999998665332100 00111278999999999999999999999999887766553 345666677999999
Q ss_pred HHhcCCCcccCHHHHHHHHHHHHHHH
Q 011841 424 YKDFGYKPTTDLAAGLRKFVKWYVSY 449 (476)
Q Consensus 424 ~~~LG~~p~~~l~e~l~~~v~~~~~~ 449 (476)
+ +|||+|+++++|+|+++++||+++
T Consensus 290 k-~Lg~~p~~~l~e~i~~ti~w~~~N 314 (315)
T d1e6ua_ 290 H-QLGWYHEISLEAGLASTYQWFLEN 314 (315)
T ss_dssp H-HTTCCCCCCHHHHHHHHHHHHHHT
T ss_pred H-HcCCCCCCCHHHHHHHHHHHHHHc
Confidence 7 599999999999999999999976
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=2.5e-41 Score=335.02 Aligned_cols=310 Identities=23% Similarity=0.350 Sum_probs=253.9
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVLH 199 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 199 (476)
+||||||+||||++|+++|+++|++|+++++...... ...........+++++.+|++|.+.+.++++++++|+|||
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~---~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih 78 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA---TDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH 78 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTH---HHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccc---hhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEe
Confidence 7999999999999999999999999999986443221 1111222335689999999999999999999999999999
Q ss_pred ccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCC----------------CCCCCC
Q 011841 200 LAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPF----------------SESHRT 263 (476)
Q Consensus 200 ~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~----------------~E~~~~ 263 (476)
+|+.........++...+++|+.||.+|+++|.+.++..+|++.|+..+|+.....+. .+..+
T Consensus 79 ~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 157 (338)
T d1orra_ 79 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQ- 157 (338)
T ss_dssp CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSC-
T ss_pred ecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCc-
Confidence 9999888878889999999999999999999999999855666666666665433221 12222
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCC---CCCcHHHHHHHHHc-----CCceEEEeeCCCCce
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGR---PDMAYFFFTKDILQ-----GKTIDVYKTQDDREV 335 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~ 335 (476)
..|.+.|+.+|...|.++..+.+.+++...++|+..+|++... ....+..++..+++ ++++.++ +++.+
T Consensus 158 ~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~g~~ 234 (338)
T d1orra_ 158 LDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQKAVEIKNGINKPFTIS---GNGKQ 234 (338)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBTTBCHHHHHHHHHHHHHTTCCCCEEEE---SSSCC
T ss_pred cccccccccccchhhhhhhhhhhccCcccccccccceeeccccccccccccchhhHHHHHHHhccCCceEEe---CCCce
Confidence 2678899999999999999999999999999999999987543 22345556655543 7788888 78899
Q ss_pred eEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcC--CCcccHHHHHHHHHHHhCCCccceeecCCCCCCC
Q 011841 336 ARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGN--TSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDV 413 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~--~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~ 413 (476)
.++|+|++|++++++.+++++....| ++||+.. +..+++.|+++.+.+.+|.+.++...+. +.++.
T Consensus 235 ~r~~~~v~D~~~~~~~~l~~~~~~~~-----------~~~~i~~~~~~~~s~~e~~~~i~~~~~~~~~~~~~~~-~~~~~ 302 (338)
T d1orra_ 235 VRDVLHAEDMISLYFTALANVSKIRG-----------NAFNIGGTIVNSLSLLELFKLLEDYCNIDMRFTNLPV-RESDQ 302 (338)
T ss_dssp EEECEEHHHHHHHHHHHHHTHHHHTT-----------CEEEESSCGGGEEEHHHHHHHHHHHHTCCCCEEEECC-CSSCC
T ss_pred eEeeecccchhhHHHHHHhccccccC-----------ccccccccccccccHHHHHHHHHHHHCCCceeEeCCC-CCCCc
Confidence 99999999999999999988655433 8999954 4678999999999999999887777664 35566
Q ss_pred CcccccHHHHHHhcCCCcccCHHHHHHHHHHHHHH
Q 011841 414 PYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVS 448 (476)
Q Consensus 414 ~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~~~ 448 (476)
..+..|++|++++|||+|+++++|+|+++++||++
T Consensus 303 ~~~~~d~~k~~~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 303 RVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp SEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred CeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence 67778999999999999999999999999999985
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=2.7e-40 Score=330.83 Aligned_cols=322 Identities=20% Similarity=0.229 Sum_probs=257.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+|+|||||||||||++|++.|+++|++|++++|......... .......+++++.+|++|++.+.++++..++|+
T Consensus 7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~----~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~ 82 (356)
T d1rkxa_ 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLF----ETARVADGMQSEIGDIRDQNKLLESIREFQPEI 82 (356)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHH----HHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHH----hhhhcccCCeEEEeeccChHhhhhhhhhchhhh
Confidence 5799999999999999999999999999999999776544322 111223489999999999999999999999999
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCC-CCCCCCCCCCCCChHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQV-PFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~-~~~E~~~~~~p~~~Y~~sK~ 275 (476)
|+|+|+....+.+..++...+.+|+.|+.+++++|++.+....+++.|+..+|...... +..|+++ ..|.++|+.+|.
T Consensus 83 v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~p~~~y~~~k~ 161 (356)
T d1rkxa_ 83 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEA-MGGYDPYSNSKG 161 (356)
T ss_dssp EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSC-BCCSSHHHHHHH
T ss_pred hhhhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccc-cCCCCccccccc
Confidence 99999998888888999999999999999999999998776577777777766655444 4444444 488999999999
Q ss_pred HHHHHHHHHHH---------HhCCcEEEEeeCcccCCCCCC-CCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHH
Q 011841 276 AGEEIAHTYNH---------IYGLALTGLRFFTVYGPWGRP-DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDV 345 (476)
Q Consensus 276 ~~E~~~~~~~~---------~~gi~~~ilRp~~v~G~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dv 345 (476)
..|..+..+.. ++++.++++||+.+|||+... ..++..+.+.+..+.++ ++ +.+.+.++++|++|+
T Consensus 162 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~i~~~~~~~~~~~~~-~~---~~~~~~~~~~~v~D~ 237 (356)
T d1rkxa_ 162 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDRIVPDILRAFEQSQPV-II---RNPHAIRPWQHVLEP 237 (356)
T ss_dssp HHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSCHHHHHHHHHHTTCCE-EC---SCTTCEECCEETHHH
T ss_pred cchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhHHHHHHHHHHhCCCce-EE---eeccccccccccccc
Confidence 99999887765 347889999999999998643 34566777777766655 45 568899999999999
Q ss_pred HHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCCCCCcccccHHHHHH
Q 011841 346 VKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNGDVPYTHANVSLAYK 425 (476)
Q Consensus 346 a~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~d~~ka~~ 425 (476)
+.++..++..+.......+ ....++......+++.++++.+.+.++....+.........+.....+|++|+++
T Consensus 238 ~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~skak~ 311 (356)
T d1rkxa_ 238 LSGYLLLAQKLYTDGAEYA------EGWNFGPNDADATPVKNIVEQMVKYWGEGASWQLDGNAHPHEAHYLKLDCSKAKM 311 (356)
T ss_dssp HHHHHHHHHHHHHTCGGGC------SEEECCCCGGGCEEHHHHHHHHHHHHCTTCCEEC-------CCCCCCBCCHHHHH
T ss_pred cchhhhhhhhhcccccccc------cccccccccccccccchhhhhhHHHhCCCccEEEcCCCCCCCcCeeeEcHHHHHH
Confidence 9999999988654321100 0033444456789999999999999998877766655556677888899999999
Q ss_pred hcCCCcccCHHHHHHHHHHHHHHHcCCC
Q 011841 426 DFGYKPTTDLAAGLRKFVKWYVSYYGIQ 453 (476)
Q Consensus 426 ~LG~~p~~~l~e~l~~~v~~~~~~~~~~ 453 (476)
+|||+|+++++++|+++++||+++.+.+
T Consensus 312 ~LGw~P~~~l~egi~~ti~wyk~~~~~~ 339 (356)
T d1rkxa_ 312 QLGWHPRWNLNTTLEYIVGWHKNWLSGT 339 (356)
T ss_dssp HHCCCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCcCCCHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999987753
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=2.7e-38 Score=305.28 Aligned_cols=275 Identities=18% Similarity=0.155 Sum_probs=244.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|||||||||||++|+++|.++||+|++++|.. +|+.|.+.+++++++.++|+||
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~------------------------~D~~d~~~~~~~l~~~~~d~vi 57 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD------------------------LDITNVLAVNKFFNEKKPNVVI 57 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT------------------------CCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh------------------------ccCCCHHHHHHHHHHcCCCEEE
Confidence 7899999999999999999999999999999822 5899999999999988999999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+|+......+...++.....|+..+..+++.+...+. .++++||..+|+.....+..|+++. .+...|+.+|..+|
T Consensus 58 h~a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~~~ss~~v~~~~~~~~~~e~~~~-~~~~~~~~~k~~~e 134 (281)
T d1vl0a_ 58 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQISTDYVFDGEAKEPITEFDEV-NPQSAYGKTKLEGE 134 (281)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCSCCSSCBCTTSCC-CCCSHHHHHHHHHH
T ss_pred eeccccccccccccchhhcccccccccccccccccccc--cccccccceeeeccccccccccccc-cchhhhhhhhhHHH
Confidence 99999888888889999999999999999999988775 7999999999999888899999987 78999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
.++++ ++++++++||++||||+.+ +...++..+..++++.++ +++.++|+|++|+++++..++++...
T Consensus 135 ~~~~~----~~~~~~i~R~~~vyG~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~i~v~D~~~~~~~~~~~~~~ 202 (281)
T d1vl0a_ 135 NFVKA----LNPKYYIVRTAWLYGDGNN---FVKTMINLGKTHDELKVV-----HDQVGTPTSTVDLARVVLKVIDEKNY 202 (281)
T ss_dssp HHHHH----HCSSEEEEEECSEESSSSC---HHHHHHHHHHHCSEEEEE-----SSCEECCEEHHHHHHHHHHHHHHTCC
T ss_pred HHHHH----hCCCccccceeEEeCCCcc---cccchhhhhccCCceeec-----CCceeccchhhhhhhhhhhhhhhccc
Confidence 88876 5889999999999999654 667788888899988888 56899999999999999999988653
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCCCC----CCCcccccHHHHHHhcCCCcccC
Q 011841 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPRNG----DVPYTHANVSLAYKDFGYKPTTD 434 (476)
Q Consensus 359 ~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~~~----~~~~~~~d~~ka~~~LG~~p~~~ 434 (476)
++||+++++.+|+.|+++.+.+.+|.+.++...+..... ++.+..+|++|+++.|||+|. +
T Consensus 203 --------------g~~~~~~~~~~s~~e~~~~i~~~~g~~~~i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~-~ 267 (281)
T d1vl0a_ 203 --------------GTFHCTCKGICSWYDFAVEIFRLTGIDVKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-E 267 (281)
T ss_dssp --------------EEEECCCBSCEEHHHHHHHHHHHHCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-B
T ss_pred --------------CceeEeCCCccchHHHHHHHHHHhCCCceEEeccHHHcCCcCCCccccccCHHHHHHHhCCCCC-C
Confidence 899999999999999999999999998877666533221 234556899999999999998 8
Q ss_pred HHHHHHHHHHHHH
Q 011841 435 LAAGLRKFVKWYV 447 (476)
Q Consensus 435 l~e~l~~~v~~~~ 447 (476)
|+|+|+++++|++
T Consensus 268 ~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 268 WKESLKEYIDLLQ 280 (281)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999999984
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=1.3e-36 Score=303.17 Aligned_cols=309 Identities=18% Similarity=0.142 Sum_probs=225.2
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
....+++||||||+||||++|+++|+++|++|++++|+.+.... ..+.............+.+|+.|.+.+.+++.++
T Consensus 7 ~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~- 84 (342)
T d1y1pa1 7 VLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN-LQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGA- 84 (342)
T ss_dssp SSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTC-
T ss_pred CCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHH-HHHhhhccccccccEEEeccccchhhhhhhcccc-
Confidence 34678999999999999999999999999999999995432111 1111112222334566889999999999999887
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCC---CC-C------------
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQ---VP-F------------ 257 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~---~~-~------------ 257 (476)
|+|+|+|+.... ..++..++..|+.||.+++++|.+.+..++|||+||+++++.... .. .
T Consensus 85 -~~v~~~a~~~~~---~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 160 (342)
T d1y1pa1 85 -AGVAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDK 160 (342)
T ss_dssp -SEEEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHH
T ss_pred -hhhhhhcccccc---cccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccc
Confidence 999999998553 355677889999999999999988743349999999865432211 11 1
Q ss_pred ----CCCCCCCCCCChHHHHHHHHHHHHHHHHHHhC--CcEEEEeeCcccCCCCCC---CCcHHHHHHHHHcCCceEEEe
Q 011841 258 ----SESHRTDQPASLYAATKKAGEEIAHTYNHIYG--LALTGLRFFTVYGPWGRP---DMAYFFFTKDILQGKTIDVYK 328 (476)
Q Consensus 258 ----~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g--i~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~~g~~~~~~~ 328 (476)
.|+++ ..|.+.|+.+|..+|.+++.+.+.++ +.++++||+.+|||...+ ......++..+.+|+.....
T Consensus 161 ~~~~~e~~~-~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~~~~~~~~~~~~l~~g~~~~~~- 238 (342)
T d1y1pa1 161 AKTLPESDP-QKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPAL- 238 (342)
T ss_dssp HHHSCTTST-THHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTTCCCHHHHHHHHHHTTCCCHHH-
T ss_pred cccccccCC-CCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccccccchHHHHHHHHcCCcCccc-
Confidence 22222 25667899999999999999988774 778899999999986432 33567788888888866544
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCC
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMP 408 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~ 408 (476)
++.+.++|+|++|+|++++.+++++... +.||+++++.+|+.|+++++.+.++........+..
T Consensus 239 ---~~~~~~~~v~v~Dva~~~i~~l~~~~~~-------------g~~~~~~~~~~t~~eia~~i~k~~p~~~~~~~~~~~ 302 (342)
T d1y1pa1 239 ---ALMPPQYYVSAVDIGLLHLGCLVLPQIE-------------RRRVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQ 302 (342)
T ss_dssp ---HTCCSEEEEEHHHHHHHHHHHHHCTTCC-------------SCEEEECCEEECHHHHHHHHHHHCTTSCCCCCCCCC
T ss_pred ---CCccceeeeeHHHHHHHHHHhhcCcccc-------------ceEEEEcCCceEHHHHHHHHHHHcCCCcCCccCCcc
Confidence 2456689999999999999999987654 456688889999999999999998543221111111
Q ss_pred CCCCCCcccccHHHHHHhcCCCcccCHHHHHHHHHHHH
Q 011841 409 RNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWY 446 (476)
Q Consensus 409 ~~~~~~~~~~d~~ka~~~LG~~p~~~l~e~l~~~v~~~ 446 (476)
.............+..+.|||+|.++|+|+|+++++.+
T Consensus 303 ~~~~~~~~~~~s~~~~k~lg~~~~~~lee~i~d~I~s~ 340 (342)
T d1y1pa1 303 GQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSE 340 (342)
T ss_dssp CCCCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCS
T ss_pred CcccccccchHHHHHHHHcCCCCCcCHHHHHHHHHHhC
Confidence 11111111122345556799999999999999998643
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-34 Score=280.48 Aligned_cols=285 Identities=16% Similarity=0.153 Sum_probs=227.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|||||||||||++|++.|.++|+.|. +++.... +.+|++|.+.++++++..+||+||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v~-~~~~~~~--------------------~~~Dl~~~~~~~~~i~~~~~D~Vi 59 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLIA-LDVHSKE--------------------FCGDFSNPKGVAETVRKLRPDVIV 59 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEEE-ECTTCSS--------------------SCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEE-EECCCcc--------------------ccCcCCCHHHHHHHHHHcCCCEEE
Confidence 7899999999999999999999987554 4442221 347999999999999998999999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGE 278 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E 278 (476)
|+||......+..++...++.|+.++.+|+++|++.+. +++++||+.+|+.....|++|+++. .|.+.|+.+|..+|
T Consensus 60 h~Aa~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~~ss~~~~~~~~~~~~~E~~~~-~p~~~y~~~k~~~e 136 (298)
T d1n2sa_ 60 NAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYSTDYVFPGTGDIPWQETDAT-SPLNVYGKTKLAGE 136 (298)
T ss_dssp ECCCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEEEGGGSCCCTTCCBCTTSCC-CCSSHHHHHHHHHH
T ss_pred EecccccccccccCccccccccccccccchhhhhcccc--ccccccccccccCCCCCCCcccccc-CCCchHhhhhhhhh
Confidence 99999888888899999999999999999999998885 7999999999998888899999987 78999999999999
Q ss_pred HHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 279 EIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 279 ~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
.+++++ .....++|++..|+..+. .....+...+..+.++.+. +.+..+++|++|+++++..+++....
T Consensus 137 ~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~i~~~~~ 205 (298)
T d1n2sa_ 137 KALQDN----CPKHLIFRTSWVYAGKGN--NFAKTMLRLAKERQTLSVI-----NDQYGAPTGAELLADCTAHAIRVALN 205 (298)
T ss_dssp HHHHHH----CSSEEEEEECSEECSSSC--CHHHHHHHHHHHCSEEEEE-----CSCEECCEEHHHHHHHHHHHHHHHHH
T ss_pred hhHHhh----hcccccccccceeeccCC--ccchhhhhhhcccceeecc-----cceeecccccchHHHHHHHHHhhhhc
Confidence 988774 445677777777754332 2345566777777777776 56788999999999999888764322
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCC---cccee-ecCCC------CCCCCcccccHHHHHHhcC
Q 011841 359 STGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTK---AKKHV-IRMPR------NGDVPYTHANVSLAYKDFG 428 (476)
Q Consensus 359 ~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~---~~~~~-~~~~~------~~~~~~~~~d~~ka~~~LG 428 (476)
.... .++||++++..+++.++++.+.+..+.. ..... .+.+. ..++.+..+|++|+++.||
T Consensus 206 ~~~~---------~~~~n~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~ 276 (298)
T d1n2sa_ 206 KPEV---------AGLYHLVAGGTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFD 276 (298)
T ss_dssp CGGG---------CEEEECCCBSCEEHHHHHHHHHHHHHHHTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHT
T ss_pred cccc---------cccccccCCCceecHHHHHHHHhhhhccCccccccceeeeehhhcCccCCCccccccCHHHHHHHHC
Confidence 1100 1999999999999999999988876432 21111 11111 1123455789999999999
Q ss_pred CCcccCHHHHHHHHHHHHHH
Q 011841 429 YKPTTDLAAGLRKFVKWYVS 448 (476)
Q Consensus 429 ~~p~~~l~e~l~~~v~~~~~ 448 (476)
|+|+ +|+++|+++++++.+
T Consensus 277 ~~~~-~~~~gl~~~i~~~~~ 295 (298)
T d1n2sa_ 277 LILP-QWELGVKRMLTEMFT 295 (298)
T ss_dssp CCCC-BHHHHHHHHHHHHHS
T ss_pred CCCC-cHHHHHHHHHHHHHh
Confidence 9998 899999999998864
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-34 Score=281.03 Aligned_cols=293 Identities=21% Similarity=0.330 Sum_probs=206.1
Q ss_pred EEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH-HHHhhc---cCCcc
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL-LTKLFD---VVPFT 195 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~-l~~~~~---~~~~d 195 (476)
||||||+||||++|+++|+++|+ +|+++++....... .. ..+. . ..|..+.+. ....+. -..++
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~--~~----~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~ 70 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF--VN----LVDL-N----IADYMDKEDFLIQIMAGEEFGDVE 70 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGG--HH----HHTS-C----CSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchh--hc----cccc-c----hhhhccchHHHHHHhhhhcccchh
Confidence 89999999999999999999995 79998754332111 11 1111 1 122222222 222222 12469
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
+|+|+|+.... ...+.+...+.|+.++.+++++++..++ ++|+.||..+|+........++++ ..|.+.|+.+|.
T Consensus 71 ~i~~~aa~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~i--~~v~~ss~~~~~~~~~~~~~~~~~-~~~~~~Y~~~K~ 145 (307)
T d1eq2a_ 71 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIESREY-EKPLNVYGYSKF 145 (307)
T ss_dssp EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCSSGGG-CCCSSHHHHHHH
T ss_pred hhhhhcccccc--cccccccccccccccccccccccccccc--cccccccccccccccccccccccc-cccccccccccc
Confidence 99999987443 3456677888999999999999999987 488888888877665544444444 478899999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHH
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVG 351 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~ 351 (476)
.+|.+++++.+.++++++++||+.||||+.... .....+.+.+..++...+.. +++...++|+|++|+++++..
T Consensus 146 ~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~r~~~~v~d~~~~~~~ 223 (307)
T d1eq2a_ 146 LFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFE--GSENFKRDFVYVGDVADVNLW 223 (307)
T ss_dssp HHHHHHHHHGGGCSSCEEEEEECEEESSSCGGGGGGSCHHHHHHHHHHC---------------CBCEEEHHHHHHHHHH
T ss_pred hhhhhccccccccccccccccceeEeeccccccccccccccccccccccccceeeec--CccceeeeeeecccHHHHHHH
Confidence 999999999999999999999999999976433 34567778888887766542 567888999999999999999
Q ss_pred HHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecCCC---CCCCCcccccHHHHHHhcC
Q 011841 352 ALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRMPR---NGDVPYTHANVSLAYKDFG 428 (476)
Q Consensus 352 ~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~~~---~~~~~~~~~d~~ka~~~LG 428 (476)
++++... ++||+++++.+++.|+++++.+..+. .++...+.+. .....+...|++|+++.+|
T Consensus 224 ~~~~~~~--------------~~~~~~~~~~~si~~i~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~ 288 (307)
T d1eq2a_ 224 FLENGVS--------------GIFNLGTGRAESFQAVADATLAYHKK-GQIEYIPFPDKLKGRYQAFTQADLTNLRAAGY 288 (307)
T ss_dssp HHHHCCC--------------EEEEESCSCCBCHHHHHHHC----------------------CCCSCCBCCHHHHHTTC
T ss_pred Hhhhccc--------------cccccccccchhHHHHHHHHHHhcCC-CCeeEeeCCccCCCCCceeeecCHHHHHHHHC
Confidence 9988643 89999999999999999999887653 3343333332 2345556679999999999
Q ss_pred CCcccCHHHHHHHHHHHH
Q 011841 429 YKPTTDLAAGLRKFVKWY 446 (476)
Q Consensus 429 ~~p~~~l~e~l~~~v~~~ 446 (476)
|+|.++++|+|+++++||
T Consensus 289 ~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 289 DKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp CCCCCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 999999999999999996
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.96 E-value=2.5e-29 Score=243.17 Aligned_cols=243 Identities=18% Similarity=0.164 Sum_probs=186.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++|+|||||||||||++++++|+++||+|++++|+........+......+...+++++.+|+.+.+.+.+.+++. +.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~~ 79 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV--DV 79 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC--SE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc--ee
Confidence 4579999999999999999999999999999999887765554444444555678999999999999999999987 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
|||+++.. +..++.+++++++.++.. ++++.|+...+... .. ...+...+...+..
T Consensus 80 vi~~~~~~---------------~~~~~~~~~~a~~~~~~~-~~~~~s~~~~~~~~-------~~-~~~~~~~~~~~~~~ 135 (307)
T d1qyca_ 80 VISTVGSL---------------QIESQVNIIKAIKEVGTV-KRFFPSEFGNDVDN-------VH-AVEPAKSVFEVKAK 135 (307)
T ss_dssp EEECCCGG---------------GSGGGHHHHHHHHHHCCC-SEEECSCCSSCTTS-------CC-CCTTHHHHHHHHHH
T ss_pred eeeccccc---------------ccchhhHHHHHHHHhccc-cceeeecccccccc-------cc-cccccccccccccc
Confidence 99999762 334556788899988886 88888875543211 11 11233345555555
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
.+.++ .+.+++++++||+.+||++... +..+.....+++.+.++ +++++.++|+|++|+|++++.+++++
T Consensus 136 ~~~~~----~~~~~~~~i~r~~~v~g~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~i~v~Dva~~~~~~l~~~ 205 (307)
T d1qyca_ 136 VRRAI----EAEGIPYTYVSSNCFAGYFLRS---LAQAGLTAPPRDKVVIL---GDGNARVVFVKEEDIGTFTIKAVDDP 205 (307)
T ss_dssp HHHHH----HHHTCCBEEEECCEEHHHHTTT---TTCTTCSSCCSSEEEEE---TTSCCEEEEECHHHHHHHHHTTSSCG
T ss_pred ccchh----hccCCCceecccceecCCCccc---hhhhhhhhhhcccceee---ecccccccCCcHHHHHHHHHHHhcCh
Confidence 55444 4469999999999999985432 11233345566777777 77899999999999999999999988
Q ss_pred CcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeec
Q 011841 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 406 (476)
Q Consensus 357 ~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~ 406 (476)
...++ .+||+++++.+|+.|+++.+.+++|.+.++...+
T Consensus 206 ~~~~~-----------~~~~~~~~~~~s~~ei~~~~~~~~G~~~~~~~~~ 244 (307)
T d1qyca_ 206 RTLNK-----------TLYLRLPANTLSLNELVALWEKKIDKTLEKAYVP 244 (307)
T ss_dssp GGTTE-----------EEECCCGGGEEEHHHHHHHHHHHTTSCCEEEEEC
T ss_pred hhcCc-----------eeEEeCCCCccCHHHHHHHHHHHHCCCCcEEECC
Confidence 76542 4567778899999999999999999988776654
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.96 E-value=5e-29 Score=242.63 Aligned_cols=248 Identities=16% Similarity=0.120 Sum_probs=186.9
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
+.++|||||||||||++|+++|+++||+|++++|.......... .........+++++.+|+.|.+.+.+++++. ++
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~-~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~--~~ 78 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKV-QMLLYFKQLGAKLIEASLDDHQRLVDALKQV--DV 78 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHH-HHHHHHHTTTCEEECCCSSCHHHHHHHHTTC--SE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHH-HHHhhhccCCcEEEEeecccchhhhhhccCc--ch
Confidence 45689999999999999999999999999999997765544322 2333445568999999999999999999988 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
++++++..... .|..++.+++++|++.+.. ++++.||.+++.... ..+. .+...|...|..
T Consensus 79 ~~~~~~~~~~~-----------~~~~~~~~~l~~a~~~~~~-~~v~~Ss~g~~~~~~------~~~~-~~~~~~~~~~~~ 139 (312)
T d1qyda_ 79 VISALAGGVLS-----------HHILEQLKLVEAIKEAGNI-KRFLPSEFGMDPDIM------EHAL-QPGSITFIDKRK 139 (312)
T ss_dssp EEECCCCSSSS-----------TTTTTHHHHHHHHHHSCCC-SEEECSCCSSCTTSC------CCCC-SSTTHHHHHHHH
T ss_pred hhhhhhhcccc-----------cchhhhhHHHHHHHHhcCC-cEEEEeeccccCCCc------cccc-chhhhhhHHHHH
Confidence 99999764322 2556677889999988876 788888876653322 2222 455667777776
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
++.+. ...+++++++||+.+||+....... .+......++.+.++ +++++.++|+|++|+|++++.+++++
T Consensus 140 ~~~~~----~~~~~~~~i~r~~~~~g~~~~~~~~--~~~~~~~~~~~~~~~---~~g~~~~~~i~v~Dva~a~~~~l~~~ 210 (312)
T d1qyda_ 140 VRRAI----EAASIPYTYVSSNMFAGYFAGSLAQ--LDGHMMPPRDKVLIY---GDGNVKGIWVDEDDVGTYTIKSIDDP 210 (312)
T ss_dssp HHHHH----HHTTCCBCEEECCEEHHHHTTTSSC--TTCCSSCCSSEECCB---TTSCSEEEEECHHHHHHHHHHHTTCG
T ss_pred HHHhh----cccccceEEeccceeecCCccchhh--HHHHhhhcccccccc---cccccccceeeHHHHHHHHHHHhcCc
Confidence 66554 4469999999999999975432111 111122345566666 77899999999999999999999998
Q ss_pred CcCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeec
Q 011841 357 GKSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIR 406 (476)
Q Consensus 357 ~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~ 406 (476)
...++ .+|++++++.+|++|+++.+++++|.+.+....+
T Consensus 211 ~~~~~-----------~~~~~~~~~~~s~~e~~~~~~~~~g~~~~~~~i~ 249 (312)
T d1qyda_ 211 QTLNK-----------TMYIRPPMNILSQKEVIQIWERLSEQNLDKIYIS 249 (312)
T ss_dssp GGSSS-----------EEECCCGGGEEEHHHHHHHHHHHHTCCCEECCBC
T ss_pred cccCc-----------eEEEeCCCcCCCHHHHHHHHHHHHCCCCeEEECC
Confidence 76542 4567777788999999999999999987665554
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.6e-26 Score=211.53 Aligned_cols=195 Identities=15% Similarity=0.027 Sum_probs=153.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+|+|+||||||+||++|+++|+++||+|++++|+.+... .....+++++.+|+.|.+++.++++++ |+
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~---------~~~~~~~~~~~gD~~d~~~l~~al~~~--d~ 70 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP---------SEGPRPAHVVVGDVLQAADVDKTVAGQ--DA 70 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC---------SSSCCCSEEEESCTTSHHHHHHHHTTC--SE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcc---------cccccccccccccccchhhHHHHhcCC--CE
Confidence 4679999999999999999999999999999999654322 123458999999999999999999988 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHH
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKA 276 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~ 276 (476)
|||++|..... + ..+++..++.++++++++++++ |||++||..+|+..... ......|...|..
T Consensus 71 vi~~~g~~~~~----~---~~~~~~~~~~~l~~aa~~~~v~-r~i~~ss~~~~~~~~~~--------~~~~~~~~~~~~~ 134 (205)
T d1hdoa_ 71 VIVLLGTRNDL----S---PTTVMSEGARNIVAAMKAHGVD-KVVACTSAFLLWDPTKV--------PPRLQAVTDDHIR 134 (205)
T ss_dssp EEECCCCTTCC----S---CCCHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCTTCS--------CGGGHHHHHHHHH
T ss_pred EEEEeccCCch----h---hhhhhHHHHHHHHHHHHhcCCC-eEEEEeeeeccCCCccc--------cccccccchHHHH
Confidence 99999873321 1 1235788999999999999997 99999999987654321 1233568889999
Q ss_pred HHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhc
Q 011841 277 GEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTA 356 (476)
Q Consensus 277 ~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~ 356 (476)
+|+++++ .|+++|+|||+.+++.... + ...+. .++.....+++++|+|++++.+++++
T Consensus 135 ~e~~l~~----~~~~~tiirp~~~~~~~~~--------------~-~~~~~---~~~~~~~~~i~~~DvA~~~~~~l~~~ 192 (205)
T d1hdoa_ 135 MHKVLRE----SGLKYVAVMPPHIGDQPLT--------------G-AYTVT---LDGRGPSRVISKHDLGHFMLRCLTTD 192 (205)
T ss_dssp HHHHHHH----TCSEEEEECCSEEECCCCC--------------S-CCEEE---SSSCSSCSEEEHHHHHHHHHHTTSCS
T ss_pred HHHHHHh----cCCceEEEecceecCCCCc--------------c-cEEEe---eCCCCCCCcCCHHHHHHHHHHHhCCC
Confidence 9987765 6999999999999874221 1 12233 34666778999999999999999988
Q ss_pred CcCC
Q 011841 357 GKST 360 (476)
Q Consensus 357 ~~~~ 360 (476)
...+
T Consensus 193 ~~~g 196 (205)
T d1hdoa_ 193 EYDG 196 (205)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 7543
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.1e-25 Score=211.34 Aligned_cols=202 Identities=12% Similarity=0.050 Sum_probs=158.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
+++|+|||||||||||++|+++|+++|. +|++++|+....... ....+.+..+|+.+.+.+.++++++
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~---------~~~~i~~~~~D~~~~~~~~~~~~~~- 81 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE---------AYKNVNQEVVDFEKLDDYASAFQGH- 81 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG---------GGGGCEEEECCGGGGGGGGGGGSSC-
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc---------ccceeeeeeeccccccccccccccc-
Confidence 3568999999999999999999999994 899999976543321 1237888889999999999999987
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHH
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAAT 273 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~s 273 (476)
|+|||++|... ...+...+.++|+.++.+++++|++.+++ +||++|+..+++ .+.+.|+++
T Consensus 82 -d~vi~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~v~-~fi~~Ss~~~~~--------------~~~~~Y~~~ 142 (232)
T d2bkaa1 82 -DVGFCCLGTTR---GKAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSSKGADK--------------SSNFLYLQV 142 (232)
T ss_dssp -SEEEECCCCCH---HHHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHH
T ss_pred -ccccccccccc---cccchhhhhhhcccccceeeecccccCcc-ccccCCcccccc--------------CccchhHHH
Confidence 99999998643 22345677889999999999999999987 999999998763 345789999
Q ss_pred HHHHHHHHHHHHHHhCC-cEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHH
Q 011841 274 KKAGEEIAHTYNHIYGL-ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGA 352 (476)
Q Consensus 274 K~~~E~~~~~~~~~~gi-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~ 352 (476)
|..+|..+.+ .++ +++||||+.+||++.... ....+...++...+ +.......++++|+|++++.+
T Consensus 143 K~~~E~~l~~----~~~~~~~IlRP~~i~G~~~~~~-~~~~~~~~~~~~~~--------~~~~~~~~I~~~dvA~a~i~~ 209 (232)
T d2bkaa1 143 KGEVEAKVEE----LKFDRYSVFRPGVLLCDRQESR-PGEWLVRKFFGSLP--------DSWASGHSVPVVTVVRAMLNN 209 (232)
T ss_dssp HHHHHHHHHT----TCCSEEEEEECCEEECTTGGGS-HHHHHHHHHHCSCC--------TTGGGGTEEEHHHHHHHHHHH
T ss_pred HHHhhhcccc----ccccceEEecCceeecCCCcCc-HHHHHHHHHhhccC--------CcccCCCeEEHHHHHHHHHHH
Confidence 9999998876 466 489999999999865432 33344555544322 233334579999999999999
Q ss_pred HhhcCcC
Q 011841 353 LDTAGKS 359 (476)
Q Consensus 353 l~~~~~~ 359 (476)
+..+...
T Consensus 210 ~~~~~~~ 216 (232)
T d2bkaa1 210 VVRPRDK 216 (232)
T ss_dssp HTSCCCS
T ss_pred HhcCccC
Confidence 8877653
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.92 E-value=5.6e-24 Score=211.50 Aligned_cols=241 Identities=17% Similarity=0.110 Sum_probs=173.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH-HHHHHhhccCCcc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA-PLLTKLFDVVPFT 195 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~-~~l~~~~~~~~~d 195 (476)
+.|+|+|||||||||++|+++|+++||+|++++|+.+.. ........++++++.+|+.|. +.++.++.++ |
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~------~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~--~ 73 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL------IAEELQAIPNVTLFQGPLLNNVPLMDTLFEGA--H 73 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH------HHHHHHTSTTEEEEESCCTTCHHHHHHHHTTC--S
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh------hhhhhcccCCCEEEEeeCCCcHHHHHHHhcCC--c
Confidence 568999999999999999999999999999999965421 112233456899999999985 5678899887 8
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
+++++...... .++..+.+++++|+++|+. ++|+.||......... .+...|..+|.
T Consensus 74 ~~~~~~~~~~~------------~~~~~~~~~~~aa~~agv~-~~v~~Ss~~~~~~~~~----------~~~~~~~~~k~ 130 (350)
T d1xgka_ 74 LAFINTTSQAG------------DEIAIGKDLADAAKRAGTI-QHYIYSSMPDHSLYGP----------WPAVPMWAPKF 130 (350)
T ss_dssp EEEECCCSTTS------------CHHHHHHHHHHHHHHHSCC-SEEEEEECCCGGGTSS----------CCCCTTTHHHH
T ss_pred eEEeecccccc------------hhhhhhhHHHHHHHHhCCC-ceEEEeeccccccCCc----------ccchhhhhhHH
Confidence 88877653221 2677788999999999987 7777887654432211 33455677888
Q ss_pred HHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH-HHHHHHHHHHHh
Q 011841 276 AGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI-DDVVKGCVGALD 354 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v-~Dva~a~~~~l~ 354 (476)
..|.++.+ .+++++++|++.+++........... ......+. .. ...+.+++....++++ +|+++++..++.
T Consensus 131 ~~~~~~~~----~~~~~~~vr~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~~~~~~~i~~~~Dva~~v~~~l~ 203 (350)
T d1xgka_ 131 TVENYVRQ----LGLPSTFVYAGIYNNNFTSLPYPLFQ-MELMPDGT-FE-WHAPFDPDIPLPWLDAEHDVGPALLQIFK 203 (350)
T ss_dssp HHHHHHHT----SSSCEEEEEECEEGGGCBSSSCSSCB-EEECTTSC-EE-EEESSCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHh----hccCceeeeeceeecccccccccccc-cccccccc-ce-eeecccCCCcceEEEeHHHHHHHHHHHHh
Confidence 88876665 58999999999988753322111000 00111222 22 2233567778888886 799999999997
Q ss_pred hcC-cCCCCCCCCCCCCCceEEEEcCCCcccHHHHHHHHHHHhCCCccceeecC
Q 011841 355 TAG-KSTGSGGKKRGPAQLRVYNLGNTSPVPVGRLVSILENLLNTKAKKHVIRM 407 (476)
Q Consensus 355 ~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt~~el~~~l~~~~g~~~~~~~~~~ 407 (476)
.+. ...| ++|++++ +.+|+.|+++++++++|++.++..+|.
T Consensus 204 ~~~~~~~G-----------~~~~~~g-~~~T~~eia~~l~~~~G~~v~~~~vp~ 245 (350)
T d1xgka_ 204 DGPQKWNG-----------HRIALTF-ETLSPVQVCAAFSRALNRRVTYVQVPK 245 (350)
T ss_dssp HCHHHHTT-----------CEEEECS-EEECHHHHHHHHHHHHTSCEEEEECSS
T ss_pred CChhhcCC-----------eEEEEeC-CcCCHHHHHHHHHHHHCCcceEEECCH
Confidence 643 2222 8999987 569999999999999999987766653
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=2e-24 Score=201.53 Aligned_cols=231 Identities=19% Similarity=0.167 Sum_probs=164.9
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCe--EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDG--VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~--V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
++++|||||||||||++|++.|+++|++ |+++.|..+ .... ...+++++.+|+.|.+.+.++++++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~---------~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~-- 69 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ---------GKEK-IGGEADVFIGDITDADSINPAFQGI-- 69 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH---------HHHH-TTCCTTEEECCTTSHHHHHHHHTTC--
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH---------HHHh-ccCCcEEEEeeeccccccccccccc--
Confidence 4579999999999999999999999976 555666221 1111 2348899999999999999999987
Q ss_pred cEEEEccccCChh-------------hhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGVR-------------YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 195 d~Vi~~Ag~~~~~-------------~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
|+|||+|+..... ...........+|+.++.++++.+.....+ ++.+.|+...+.....
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~------- 141 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVGSMGGTNPDHP------- 141 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEEETTTTCTTCG-------
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccccc-ccccccccccCCCCcc-------
Confidence 9999999864321 112334557788999999999999988886 8888888776543211
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEecee
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTY 341 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~ 341 (476)
....+...|...+.+.+.+ ....|++++++||+++||+....... .............+++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ilRp~~v~g~~~~~~~~--------------~~~~~~~~~~~~~~~i~ 203 (252)
T d2q46a1 142 LNKLGNGNILVWKRKAEQY----LADSGTPYTIIRAGGLLDKEGGVREL--------------LVGKDDELLQTDTKTVP 203 (252)
T ss_dssp GGGGGGCCHHHHHHHHHHH----HHHSSSCEEEEEECEEECSCTTSSCE--------------EEESTTGGGGSSCCEEE
T ss_pred cccccccchhhhhhhhhhh----hhcccccceeecceEEECCCcchhhh--------------hhccCcccccCCCCeEE
Confidence 0112334566666655544 44479999999999999996442111 11100011244467999
Q ss_pred HHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC---cccHHHHHHHHHHHhC
Q 011841 342 IDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS---PVPVGRLVSILENLLN 397 (476)
Q Consensus 342 v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~---~vt~~el~~~l~~~~g 397 (476)
++|+|++++.+++++...+ ++|||+++. ..++.++.+++.++.+
T Consensus 204 ~~Dva~a~~~~l~~~~~~g------------~~~~i~~~~~~~~~~~~~~~~lf~~i~~ 250 (252)
T d2q46a1 204 RADVAEVCIQALLFEEAKN------------KAFDLGSKPEGTSTPTKDFKALFSQVTS 250 (252)
T ss_dssp HHHHHHHHHHHTTCGGGTT------------EEEEEEECCTTTSCCCCCHHHHHTTCCC
T ss_pred HHHHHHHHHHHhCCccccC------------cEEEEeeCCCCCChhHHHHHHHHHHHHh
Confidence 9999999999999887654 899998743 4667788777765544
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=4e-23 Score=190.68 Aligned_cols=191 Identities=15% Similarity=0.098 Sum_probs=138.3
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.|+|||||||||||++|+++|+++|+ +|+++.|.... .... +..+..|..++.+.+.. .+|
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------------~~~~---~~~~~~d~~~~~~~~~~-~~d 64 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------------EHPR---LDNPVGPLAELLPQLDG-SID 64 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------------CCTT---EECCBSCHHHHGGGCCS-CCS
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------------hccc---ccccccchhhhhhcccc-chh
Confidence 48999999999999999999999998 67777764321 1123 33455555544443332 459
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHH
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKK 275 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~ 275 (476)
+|||++|.. .....+.+.+.+.|+.++.+++++|++.+++ +|+++||..+++ .+.+.|+.+|.
T Consensus 65 ~vi~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~-~~i~~Ss~~~~~--------------~~~~~y~~~K~ 127 (212)
T d2a35a1 65 TAFCCLGTT--IKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGADA--------------KSSIFYNRVKG 127 (212)
T ss_dssp EEEECCCCC--HHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCT--------------TCSSHHHHHHH
T ss_pred eeeeeeeee--ccccccccccccchhhhhhhccccccccccc-cccccccccccc--------------ccccchhHHHH
Confidence 999999863 2334566789999999999999999999997 999999988864 34578999999
Q ss_pred HHHHHHHHHHHHhCC-cEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHh
Q 011841 276 AGEEIAHTYNHIYGL-ALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALD 354 (476)
Q Consensus 276 ~~E~~~~~~~~~~gi-~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~ 354 (476)
.+|+.+++ .++ +++|+||+.|||+....... . .. ..++... ....+.++|++|+|++++.+++
T Consensus 128 ~~E~~l~~----~~~~~~~I~Rp~~v~G~~~~~~~~-~-----~~-~~~~~~~-----~~~~~~~i~v~DvA~ai~~~~~ 191 (212)
T d2a35a1 128 ELEQALQE----QGWPQLTIARPSLLFGPREEFRLA-E-----IL-AAPIARI-----LPGKYHGIEACDLARALWRLAL 191 (212)
T ss_dssp HHHHHHTT----SCCSEEEEEECCSEESTTSCEEGG-G-----GT-TCCCC---------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhhccc----cccccceeeCCcceeCCcccccHH-H-----HH-HHHHhhc-----cCCCCcEEEHHHHHHHHHHHHc
Confidence 99988765 465 59999999999996543211 0 11 1222111 1123467999999999999998
Q ss_pred hcCc
Q 011841 355 TAGK 358 (476)
Q Consensus 355 ~~~~ 358 (476)
++..
T Consensus 192 ~~~~ 195 (212)
T d2a35a1 192 EEGK 195 (212)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.88 E-value=3e-22 Score=190.65 Aligned_cols=230 Identities=14% Similarity=0.106 Sum_probs=167.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||+.+++.|+++|++|++++|+.+..++........ ....++..+.+|++|+++++++++.+
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~-~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLET-APDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-CTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh-CCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999654332222222221 22347889999999999999888754
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++. +.+. .+||++||.+.+-+.
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Ii~isS~~~~~~~--------- 150 (258)
T d1iy8a_ 81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGS-GMVVNTASVGGIRGI--------- 150 (258)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCGGGTSBC---------
T ss_pred hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcC-CCCcccccHhhccCC---------
Confidence 68999999996432 23456677899999999999988753 3343 489999998754221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC------CCCcHHHHHHHHHcCCceEEEeeCCC
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR------PDMAYFFFTKDILQGKTIDVYKTQDD 332 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (476)
+....|+.+|.+.+.+.+.++.++ ||++++|.||.|..|... .......+.+.+.+..|+.
T Consensus 151 ---~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~------- 220 (258)
T d1iy8a_ 151 ---GNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSK------- 220 (258)
T ss_dssp ---SSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTC-------
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCC-------
Confidence 345789999999999999988764 799999999999765210 0011223444444444432
Q ss_pred CceeEeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 333 REVARDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 333 ~~~~~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.+..++|+|++++.++... ..-+| +++.+.+|..
T Consensus 221 -----R~~~p~dvA~~v~fL~S~~s~~itG-----------~~i~VDGG~s 255 (258)
T d1iy8a_ 221 -----RYGEAPEIAAVVAFLLSDDASYVNA-----------TVVPIDGGQS 255 (258)
T ss_dssp -----SCBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTTT
T ss_pred -----CCcCHHHHHHHHHHHhCchhcCCcC-----------ceEEcCcchh
Confidence 2567899999999888643 33344 8999988764
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2e-21 Score=183.44 Aligned_cols=224 Identities=19% Similarity=0.163 Sum_probs=166.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
.++|++|||||++.||+++++.|+++|++|++++|+.+. +.+.. .+..+++.+.+|++|+++++++++.. ++
T Consensus 5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~----l~~~~---~~~~~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD----LDSLV---RECPGIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHH---HHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH----HHHHH---HhcCCCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 588999999999999999999999999999999995421 22222 22347889999999999999999876 78
Q ss_pred cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 195 d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
|++|||||.... +.+.++.+..+++|+.++..+.+.+.. .+...++|++||.+..... +.
T Consensus 78 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------------~~ 145 (244)
T d1pr9a_ 78 DLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------------TN 145 (244)
T ss_dssp CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TT
T ss_pred eEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccc------------cc
Confidence 999999998443 334566778999999999888876532 2333489999998764322 34
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
...|+.+|.+.+.+.+.++.++ ||+++.|.||.|..+.......-....+.+.+.-|+. .+..++
T Consensus 146 ~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~------------R~~~pe 213 (244)
T d1pr9a_ 146 HSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLG------------KFAEVE 213 (244)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTTC------------SCBCHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCCCC------------CCcCHH
Confidence 5689999999999999988764 7999999999998763221111123444455544431 256789
Q ss_pred HHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 344 DVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 344 Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
|+|++++.++.... .-+| +++.+.+|-
T Consensus 214 evA~~v~fL~S~~a~~itG-----------~~i~vDGG~ 241 (244)
T d1pr9a_ 214 HVVNAILFLLSDRSGMTTG-----------STLPVEGGF 241 (244)
T ss_dssp HHHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred HHHHHHHHHhCchhCCcCC-----------cEEEECccH
Confidence 99999998875433 3344 889887764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=9.3e-22 Score=185.45 Aligned_cols=224 Identities=19% Similarity=0.153 Sum_probs=165.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
.++|++|||||++.||+.++++|+++|++|++++|+.+ ..++. ..+..++..+.+|++|+++++++++.. ++
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~----~l~~~---~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~i 75 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNS----DLVSL---AKECPGIEPVCVDLGDWDATEKALGGIGPV 75 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHH---HHHSTTCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHH---HHhcCCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999998532 11222 223457889999999999999999876 68
Q ss_pred cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 195 d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
|++|||||.... ..+.++.+..+++|+.++..+.+++. +.+...++|++||...+... +.
T Consensus 76 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------------~~ 143 (242)
T d1cyda_ 76 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------------PN 143 (242)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------------TT
T ss_pred eEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccC------------Cc
Confidence 999999997443 33455677899999999999888653 23333489999998764322 34
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
...|+.+|.+.+.+.+.++.++ ||++++|.||.|..+..........+.+.+.+..|+ ..+..++
T Consensus 144 ~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl------------~R~~~pe 211 (242)
T d1cyda_ 144 LITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPL------------RKFAEVE 211 (242)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTT------------SSCBCHH
T ss_pred cccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcCCC------------CCCcCHH
Confidence 5689999999999999988764 799999999999776211000012333444433333 1256789
Q ss_pred HHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 344 DVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 344 Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
|+|++++.++... ..-+| +++.+.+|.
T Consensus 212 eva~~v~fL~S~~s~~itG-----------~~i~vDGG~ 239 (242)
T d1cyda_ 212 DVVNSILFLLSDRSASTSG-----------GGILVDAGY 239 (242)
T ss_dssp HHHHHHHHHHSGGGTTCCS-----------SEEEESTTG
T ss_pred HHHHHHHHHhCchhcCcCC-----------ceEEeCcch
Confidence 9999999888543 33343 899888764
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.87 E-value=8e-22 Score=187.96 Aligned_cols=230 Identities=12% Similarity=0.059 Sum_probs=166.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+++||||++.||++++++|+++|++|++++|..+.. .+....... ...++..+.+|++|+++++++++.+
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~---~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDE---ANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHH---HHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999965321 111111111 2347889999999999999888754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++ ++.+....||++||.+.+.+.
T Consensus 82 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~--------- 152 (261)
T d1geea_ 82 EFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW--------- 152 (261)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC---------
T ss_pred HhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccC---------
Confidence 78999999998443 3445667789999999988888765 344544469999998754221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
+....|+.+|.+.+.+.+.++.++ ||++++|.||.|..|.......-......+.+..|+. .
T Consensus 153 ---~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~------------R 217 (261)
T d1geea_ 153 ---PLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMG------------Y 217 (261)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTS------------S
T ss_pred ---ccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCCC------------C
Confidence 345689999999999999988765 7999999999998763221000122333344333331 2
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
+..++|+|++++.++.... .-+| +++.+.++..+
T Consensus 218 ~~~pediA~~v~fL~S~~s~~itG-----------~~i~vDGG~sl 252 (261)
T d1geea_ 218 IGEPEEIAAVAAWLASSEASYVTG-----------ITLFADGGMTL 252 (261)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGG
T ss_pred CCCHHHHHHHHHHHhCchhcCCcC-----------CeEEECCCeeC
Confidence 5678999999998885433 3344 89999888643
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.87 E-value=6e-22 Score=188.92 Aligned_cols=233 Identities=15% Similarity=0.117 Sum_probs=160.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|++|||||++.||++++++|+++|++|++.+|++.. ..++..... ....++.++.+|++|+++++++++.+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~---~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 78 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAA---EIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAV 78 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHH---HHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHH---HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999996431 111222211 12347889999999999999988754
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|++|||||.... +.+.++.+..+++|+.++..+++++ ++.+. .+||++||.+.+.+.
T Consensus 79 ~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Iv~isS~~~~~~~-------- 149 (260)
T d1x1ta1 79 RQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGF-GRIINIASAHGLVAS-------- 149 (260)
T ss_dssp HHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC--------
T ss_pred HHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCC-ceEeecccccceecc--------
Confidence 68999999997443 3445667789999999998887765 44444 399999998764322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceE----EEeeCCCC
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTID----VYKTQDDR 333 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~ 333 (476)
+....|+.+|.+.+.+.+.++.++ |++++.|.||.|-.|.... +........... ........
T Consensus 150 ----~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 219 (260)
T d1x1ta1 150 ----ANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEK------QISALAEKNGVDQETAARELLSEK 219 (260)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------------------------------CHHHH
T ss_pred ----CCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhh------hhhhhhhhcCCChHHHHHHHHHhc
Confidence 345689999999999999998774 7999999999997763221 111000000000 00000000
Q ss_pred ceeEeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 334 EVARDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.....+..++|+|++++.++... ..-+| +++.+.+|-
T Consensus 220 ~Pl~R~g~pediA~~v~fL~S~~a~~itG-----------~~i~vDGG~ 257 (260)
T d1x1ta1 220 QPSLQFVTPEQLGGTAVFLASDAAAQITG-----------TTVSVDGGW 257 (260)
T ss_dssp CTTCCCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred CCCCCCcCHHHHHHHHHHHhChhhCCCcC-----------CEEEECcch
Confidence 11123678999999999888543 33344 899888763
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.87 E-value=2.8e-21 Score=182.77 Aligned_cols=226 Identities=12% Similarity=0.033 Sum_probs=158.7
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
+.++|++|||||++.||+.+++.|+++|++|++.+|++.. ....... ....++..+.+|++|+++++++++.+
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~---~~~~~~~--~~g~~~~~~~~Dvs~~~~v~~~~~~~~~ 76 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP---EAEAAIR--NLGRRVLTVKCDVSQPGDVEAFGKQVIS 76 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH---HHHHHHH--HTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH---HHHHHHH--HcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999996541 1111111 12347899999999999999887654
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++ ++.+. .+||++||.+...+.
T Consensus 77 ~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~Iv~isS~~~~~~~--------- 146 (247)
T d2ew8a1 77 TFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGW-GRIINLTSTTYWLKI--------- 146 (247)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGGSCC---------
T ss_pred HcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCC-CCccccccchhcccC---------
Confidence 68999999998442 3455677889999999999888875 34443 389999998764321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
+....|+.+|.+.+.+.+.++.++ ||++++|.||.|..+....... ....+..... ......
T Consensus 147 ---~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~~~~~~-----------~~~l~r 211 (247)
T d2ew8a1 147 ---EAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASAL-SAMFDVLPNM-----------LQAIPR 211 (247)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC-------------------CT-----------TSSSCS
T ss_pred ---cccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCcccccccc-chhHHHHHHH-----------hccCCC
Confidence 345789999999999999988764 7999999999998764322110 0111111100 111223
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+..++|+|++++.++.... .-+| +++.+.+|-
T Consensus 212 ~~~pedvA~~v~fL~S~~s~~itG-----------~~i~vDGG~ 244 (247)
T d2ew8a1 212 LQVPLDLTGAAAFLASDDASFITG-----------QTLAVDGGM 244 (247)
T ss_dssp CCCTHHHHHHHHHHTSGGGTTCCS-----------CEEEESSSC
T ss_pred CCCHHHHHHHHHHHhCchhcCCcC-----------CeEEECCCE
Confidence 5678999999998886433 2344 889888764
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=9.6e-22 Score=186.38 Aligned_cols=229 Identities=15% Similarity=0.110 Sum_probs=165.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||+++||+.+++.|+++|++|++++|+.+..++..++..... ..++..+.+|++|+++++++++.+
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY--GVETMAFRCDVSNYEEVKKLLEAVKEK 80 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH--CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh--CCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999996543333222222211 347889999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++. +.+. +++|++||......
T Consensus 81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~Ii~i~S~~~~~~----------- 148 (251)
T d1vl8a_ 81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDN-PSIINIGSLTVEEV----------- 148 (251)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSS-CEEEEECCGGGTCC-----------
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccc-ccccccccchhccc-----------
Confidence 68999999997432 33556677899999999999988754 3333 49999998654211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.......|+.+|.+.+.+.+.++.++ |+++++|.||.|-.+.......-....+.+.+.-|+. .+
T Consensus 149 ~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~------------R~ 216 (251)
T d1vl8a_ 149 TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLG------------RT 216 (251)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTS------------SC
T ss_pred cCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCC------------CC
Confidence 11335689999999999999988764 7999999999998774321000123344444444432 24
Q ss_pred eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 340 TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..++|+|++++.++.... .-+| +++.+.+|-
T Consensus 217 ~~pedvA~~v~fL~S~~a~~itG-----------~~i~vDGG~ 248 (251)
T d1vl8a_ 217 GVPEDLKGVAVFLASEEAKYVTG-----------QIIFVDGGW 248 (251)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred CCHHHHHHHHHHHhCchhCCCcC-----------cEEEeCcCe
Confidence 567999999998875432 3344 899888764
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.87 E-value=8.8e-22 Score=186.70 Aligned_cols=224 Identities=12% Similarity=0.072 Sum_probs=166.0
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccC-
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
..++|++|||||++.||+++++.|+++|++|++++|+.+..+ +...+... ..++..+.+|++|+++++++++.+
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~----~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~ 82 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCD----SVVDEIKSFGYESSGYAGDVSKKEEISEVINKIL 82 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHH----HHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHH----HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999544322 22222222 347899999999999999888754
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|++|||||.... +...++.+..+++|+.++..+.+++ ++.+. .+||++||.+.+.+.
T Consensus 83 ~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~~~~~~~-------- 153 (251)
T d2c07a1 83 TEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRY-GRIINISSIVGLTGN-------- 153 (251)
T ss_dssp HHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHCC--------
T ss_pred HhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCC-eEEEEECCHHhcCCC--------
Confidence 78999999997443 3344667789999999998888865 34443 399999998754322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.....|+.+|.+.+.+.+.++.++ ||++++|.||.|-.+..... ...+.+.+.+.-|+.
T Consensus 154 ----~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~--~~~~~~~~~~~~pl~------------ 215 (251)
T d2c07a1 154 ----VGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDKI--SEQIKKNIISNIPAG------------ 215 (251)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC-----C--CHHHHHHHHTTCTTS------------
T ss_pred ----CCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEeccccccc--CHHHHHHHHhcCCCC------------
Confidence 345689999999999999988764 79999999999988754321 234555555554442
Q ss_pred eceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 338 DFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
.+..++|+|++++.++.... .-+| +++.+.+|
T Consensus 216 R~~~pedvA~~v~fL~S~~s~~itG-----------~~i~vDGG 248 (251)
T d2c07a1 216 RMGTPEEVANLACFLSSDKSGYING-----------RVFVIDGG 248 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTT
T ss_pred CCcCHHHHHHHHHHHhCchhCCCcC-----------cEEEECCC
Confidence 25678999999988885443 3344 88988776
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.87 E-value=1.7e-21 Score=184.32 Aligned_cols=223 Identities=15% Similarity=0.058 Sum_probs=162.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||+++++.|+++|++|++++|+.+. .+.. +..+..++++|++|+++++++++.+
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~-----~~~~----~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 73 (248)
T d2d1ya1 3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-----KEVA----EAIGGAFFQVDLEDERERVRFVEEAAYA 73 (248)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-----HHHH----HHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH-----HHHH----HHcCCeEEEEeCCCHHHHHHHHHHHHHh
Confidence 588999999999999999999999999999999996541 1111 1225678899999999998888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++. +.+. .+||++||...+.+.
T Consensus 74 ~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~Ii~isS~~~~~~~---------- 142 (248)
T d2d1ya1 74 LGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGG-GAIVNVASVQGLFAE---------- 142 (248)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSBC----------
T ss_pred cCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccc-ccccccccccccccc----------
Confidence 78999999997433 33456677899999999999888764 3443 489999998865322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC----CCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR----PDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
+....|+.+|.+.+.+.+.++.++ |+++++|.||.|-.|... .......+.+.+.+..|+
T Consensus 143 --~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pl----------- 209 (248)
T d2d1ya1 143 --QENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHAL----------- 209 (248)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTT-----------
T ss_pred --cccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCCC-----------
Confidence 455789999999999999888774 799999999999765210 000001112222222222
Q ss_pred eEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 336 ARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..+..++|+|++++.++.... .-+| +++.+.+|-.-
T Consensus 210 -~R~~~pedia~~v~fL~S~~s~~itG-----------~~i~vDGG~ta 246 (248)
T d2d1ya1 210 -RRLGKPEEVAEAVLFLASEKASFITG-----------AILPVDGGMTA 246 (248)
T ss_dssp -SSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGG
T ss_pred -CCCcCHHHHHHHHHHHhCchhcCCCC-----------cEEEcCcCccc
Confidence 235678999999998885433 3344 89999887543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.5e-21 Score=181.49 Aligned_cols=224 Identities=15% Similarity=0.064 Sum_probs=164.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||+++++.|+++|++|++++|+.+ ..+... .+..++..+.+|++|+++++++++.+
T Consensus 4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~~~~~~---~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 76 (250)
T d1ydea1 4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES----GGRALE---QELPGAVFILCDVTQEDDVKTLVSETIRR 76 (250)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHH---HHCTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHH---HhcCCCeEEEccCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999998532 122222 22357899999999999999888754
Q ss_pred --CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|++|||||.... +.+.++.+..+++|+.++..+++++. +.+ .++|++||.+.....
T Consensus 77 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--G~Ii~isS~~~~~~~--------- 145 (250)
T d1ydea1 77 FGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ--GNVINISSLVGAIGQ--------- 145 (250)
T ss_dssp HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCHHHHHCC---------
T ss_pred cCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC--CCCcccccccccccc---------
Confidence 68999999996321 23445677899999999998888753 333 489999998754321
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC----CCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR----PDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
+....|+.+|.+.+.+.+.++.++ ||+++.|.||.|..|... ........++......|+
T Consensus 146 ---~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---------- 212 (250)
T d1ydea1 146 ---AQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPL---------- 212 (250)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTT----------
T ss_pred ---cCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCC----------
Confidence 345789999999999999988764 799999999999765210 000112233333333333
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..+..++|+|++++.++.....-+| +++.+.++..+
T Consensus 213 --~R~g~p~eva~~v~fL~Sda~~itG-----------~~i~vDGG~~l 248 (250)
T d1ydea1 213 --GRMGQPAEVGAAAVFLASEANFCTG-----------IELLVTGGAEL 248 (250)
T ss_dssp --SSCBCHHHHHHHHHHHHHHCTTCCS-----------CEEEESTTTTS
T ss_pred --CCCCCHHHHHHHHHHHhCccCCCcC-----------CeEEECCCccc
Confidence 1356789999999988754333344 89999887543
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.87 E-value=1.7e-21 Score=182.95 Aligned_cols=214 Identities=16% Similarity=0.076 Sum_probs=159.8
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
+.++|++|||||++.||+++++.|+++|++|++++|+.+.. .++..+.+|++|+++++++++.+
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~--------------~~~~~~~~Dv~~~~~v~~~~~~~~~ 69 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP--------------KGLFGVEVDVTDSDAVDRAFTAVEE 69 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC--------------TTSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh--------------cCceEEEEecCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999976532 25678999999999998888754
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+.+ ++.+.. +||++||.+...+.
T Consensus 70 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g-~Iv~isS~~~~~~~--------- 139 (237)
T d1uzma1 70 HQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFG-RMIFIGSVSGLWGI--------- 139 (237)
T ss_dssp HHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCCCC-------------
T ss_pred hcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCC-ceEEEcchhhccCC---------
Confidence 68999999997443 3345667789999999988887754 445543 89999998754322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
.....|+.+|.+.+.+.+.++.++ |+++++|.||.|..+.... ......+.+.+.-|+ ..
T Consensus 140 ---~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~--~~~~~~~~~~~~~pl------------~R 202 (237)
T d1uzma1 140 ---GNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA--LDERIQQGALQFIPA------------KR 202 (237)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH--SCHHHHHHHGGGCTT------------CS
T ss_pred ---cccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhhc--cCHHHHHHHHhcCCC------------CC
Confidence 345689999999999999988764 7999999999997762211 011223333333222 23
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
+..++|+|++++.++.... .-+| +++.+.+|
T Consensus 203 ~~~pedvA~~v~fL~S~~s~~itG-----------~~i~vdGG 234 (237)
T d1uzma1 203 VGTPAEVAGVVSFLASEDASYISG-----------AVIPVDGG 234 (237)
T ss_dssp CBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTT
T ss_pred CcCHHHHHHHHHHHhCchhcCCcC-----------CeEEECCC
Confidence 5678999999998885533 3344 88988776
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=7.9e-22 Score=186.07 Aligned_cols=223 Identities=14% Similarity=0.063 Sum_probs=165.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+++||||++.||+++++.|+++|++|++++|+.+. .+....+. ..++..+.+|++|+++++++++.+
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~----l~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENG----AQAISDYL--GANGKGLMLNVTDPASIESVLEKIRAE 75 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHH----HHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHHh--CCCCcEEEEEecCHHHhhhhhhhhhcc
Confidence 478999999999999999999999999999999995432 22222222 236788999999999998888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... +...++.+..+++|+.++..+++++ ++.+. .+||++||.+.+.+.
T Consensus 76 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~II~isS~~~~~~~---------- 144 (243)
T d1q7ba_ 76 FGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRH-GRIITIGSVVGTMGN---------- 144 (243)
T ss_dssp TCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC----------
T ss_pred cCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCC-CEeeeecchhhcCCC----------
Confidence 68999999987443 3345567788999999999988876 33443 389999998755322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.....|+.+|.+.+.+.+.++.++ |+++++|+||.|-.+.... ........+.+..|+ ..+
T Consensus 145 --~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl------------~R~ 208 (243)
T d1q7ba_ 145 --GGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTRA--LSDDQRAGILAQVPA------------GRL 208 (243)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT--SCHHHHHHHHTTCTT------------SSC
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhhh--hhhhHHHHHHhcCCC------------CCC
Confidence 345789999999999999988764 8999999999997653211 112233344444333 125
Q ss_pred eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..++|+|++++.++.... .-+| +++++.+|..
T Consensus 209 ~~pedvA~~v~fL~S~~s~~itG-----------q~i~vdGG~~ 241 (243)
T d1q7ba_ 209 GGAQEIANAVAFLASDEAAYITG-----------ETLHVNGGMY 241 (243)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTSS
T ss_pred CCHHHHHHHHHHHhCchhcCCcC-----------CeEEECCCeE
Confidence 678999999998886543 2344 8999988753
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=1.4e-21 Score=185.62 Aligned_cols=226 Identities=15% Similarity=0.170 Sum_probs=167.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||+++++.|+++|++|++++|+.+..++..++... ...++..+.+|++|+++++++++.+
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~---~g~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ---LGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH---cCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999965433222222211 1347899999999999998887654
Q ss_pred --CccEEEEccccCCh---hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV---RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~---~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+.+. +.+. .++|++||.+.+.+.
T Consensus 86 ~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-g~Ii~isS~~~~~~~----------- 153 (255)
T d1fmca_ 86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGG-GVILTITSMAAENKN----------- 153 (255)
T ss_dssp HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTCCC-----------
T ss_pred cCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccc-cccccccccchhccc-----------
Confidence 78999999997432 33456677899999999998887653 3443 389999998765322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
.....|+.+|.+.+.+.+.++.++ ||++++|.||.|..+..... .-....+.+.+..|+. .+.
T Consensus 154 -~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~-~~~e~~~~~~~~~pl~------------R~g 219 (255)
T d1fmca_ 154 -INMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSV-ITPEIEQKMLQHTPIR------------RLG 219 (255)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTT-CCHHHHHHHHHTCSSC------------SCB
T ss_pred -cccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhhcc-CCHHHHHHHHhcCCCC------------CCc
Confidence 456789999999999999988774 79999999999977632111 1123444455444432 256
Q ss_pred eHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 341 YIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.++|+|++++.++.... .-+| +++.+.+|.
T Consensus 220 ~pedvA~~v~fL~S~~s~~itG-----------~~i~vDGG~ 250 (255)
T d1fmca_ 220 QPQDIANAALFLCSPAASWVSG-----------QILTVSGGG 250 (255)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTS
T ss_pred CHHHHHHHHHHHhCchhcCCcC-----------CEEEECcCc
Confidence 78999999999885433 3344 899998875
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=1.1e-20 Score=177.88 Aligned_cols=220 Identities=17% Similarity=0.117 Sum_probs=164.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||+++++.|+++|++|++++|+.+ . ..+..+..+++.+.+|++|+++++++++.+
T Consensus 3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~----~----l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG----P----LREAAEAVGAHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----H----HHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----H----HHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999999999532 1 112223447889999999999999888764
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++.. .+. ..++++||.+..+.
T Consensus 75 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-~~i~~~ss~~~~~~----------- 142 (242)
T d1ulsa_ 75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNP-GSIVLTASRVYLGN----------- 142 (242)
T ss_dssp HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC-EEEEEECCGGGGCC-----------
T ss_pred cCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhcccccccccc-ceeeeeccccccCC-----------
Confidence 68999999997432 344566778999999999999887643 232 26777777654321
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
+....|+.+|.+.+.+.+.++.++ ||+++.|.||.|-.+..... .....+.+.+..|+. .+
T Consensus 143 --~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~--~~~~~~~~~~~~pl~------------R~ 206 (242)
T d1ulsa_ 143 --LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV--PEKVREKAIAATPLG------------RA 206 (242)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS--CHHHHHHHHHTCTTC------------SC
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhcC--CHHHHHHHHhcCCCC------------CC
Confidence 345789999999999999988765 79999999999988754322 233444555444442 25
Q ss_pred eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..++|+|++++.++.... .-+| +++.+.+|..
T Consensus 207 ~~pedia~~v~fL~S~~s~~itG-----------~~i~vDGG~t 239 (242)
T d1ulsa_ 207 GKPLEVAYAALFLLSDESSFITG-----------QVLFVDGGRT 239 (242)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTT
T ss_pred CCHHHHHHHHHHHhchhhCCCCC-----------cEEEECCCcc
Confidence 568999999998886433 3344 8999988754
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.86 E-value=1.8e-21 Score=185.36 Aligned_cols=227 Identities=17% Similarity=0.123 Sum_probs=150.6
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..++|++|||||++.||+.+++.|+++|++|++++|+.+..++..++.. ....++..+.+|++|+++++++++.+
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~---~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ---KKGFQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCceEEEeccCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999996543333222221 12347899999999999988877532
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|++|||||.... +.+.++.+..+++|+.++..+++++. +.+. .+||++||.......
T Consensus 82 ~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Iv~isS~~~~~~~-------- 152 (259)
T d1xq1a_ 82 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGC-GNIIFMSSIAGVVSA-------- 152 (259)
T ss_dssp HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CEEEEEC----------------
T ss_pred HhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccc-ccccccccccccccc--------
Confidence 58999999997443 33456677899999999998888753 3444 399999997754221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.....|+.+|.+.+.+.+.++.++ ||++++|.||.|-.|..... ......+.+.+..|+ .
T Consensus 153 ----~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~-~~~~~~~~~~~~~pl------------~ 215 (259)
T d1xq1a_ 153 ----SVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV-YDDEFKKVVISRKPL------------G 215 (259)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC------------------------------------
T ss_pred ----cccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhh-chHHHHHHHHhCCCC------------C
Confidence 345789999999999999988774 89999999999987643211 111112222222222 2
Q ss_pred eceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 338 DFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+..++|+|.+++.++.... .-+| +++.+.+|-
T Consensus 216 R~~~pedvA~~v~fL~S~~s~~iTG-----------~~i~vDGG~ 249 (259)
T d1xq1a_ 216 RFGEPEEVSSLVAFLCMPAASYITG-----------QTICVDGGL 249 (259)
T ss_dssp --CCGGGGHHHHHHHTSGGGTTCCS-----------CEEECCCCE
T ss_pred CCcCHHHHHHHHHHHhCchhcCCcC-----------cEEEeCCCE
Confidence 35667999999998875432 3343 888887764
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.86 E-value=7e-21 Score=179.44 Aligned_cols=218 Identities=18% Similarity=0.103 Sum_probs=162.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||+++++.|+++|++|++++|+.+ ..+....+. ...+.++.+|++|+++++++++.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDE----EGKAMAAEL--ADAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHT--GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHh--hCcceEEEeecCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999543 222222222 247889999999999998888654
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+.+ ++.+. .+||++||...+.+.
T Consensus 78 ~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~Ii~isS~~~~~~~---------- 146 (244)
T d1nffa_ 78 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGR-GSIINISSIEGLAGT---------- 146 (244)
T ss_dssp HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC----------
T ss_pred hCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCc-ceEEecccccccccc----------
Confidence 68999999998443 3345667789999999999888765 33443 389999998865322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.....|+.+|.+.+.+.+.++.++ ||+++.|.||.|..|..... .+ .... .....+
T Consensus 147 --~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~------~~-~~~~------------~pl~R~ 205 (244)
T d1nffa_ 147 --VACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWV------PE-DIFQ------------TALGRA 205 (244)
T ss_dssp --TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTTS------CT-TCSC------------CSSSSC
T ss_pred --ccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhhh------hH-HHHh------------ccccCC
Confidence 345789999999999999988775 79999999999987632210 00 0001 111236
Q ss_pred eeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 TYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..++|+|++++.++... ..-+| +++.+.+|..
T Consensus 206 ~~p~diA~~v~fL~s~~s~~itG-----------~~i~vDGG~~ 238 (244)
T d1nffa_ 206 AEPVEVSNLVVYLASDESSYSTG-----------AEFVVDGGTV 238 (244)
T ss_dssp BCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred CCHHHHHHHHHHHhChhhCCCcC-----------CEEEECCCee
Confidence 78999999999888543 33344 8999987753
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.86 E-value=3.6e-21 Score=183.23 Aligned_cols=228 Identities=15% Similarity=0.104 Sum_probs=166.2
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..++|++|||||++.||+++++.|+++|++|++.+|+.+..++..++... ....+.++.+|++|+++++++++.+
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS---KGFKVEASVCDLSSRSERQELMNTVAN 81 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999965433332222211 2347888999999999988877532
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++. +.+. .+||++||.......
T Consensus 82 ~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~Ii~isS~~~~~~~-------- 152 (259)
T d2ae2a_ 82 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASER-GNVVFISSVSGALAV-------- 152 (259)
T ss_dssp HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSS-EEEEEECCGGGTSCC--------
T ss_pred HhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcc-ccccccccccccccc--------
Confidence 58999999997432 34456677899999999998888753 3333 489999998754221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCC---CCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWG---RPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
+....|+.+|.+.+.+.+.++.++ ||++++|.||.|-.+.. ..+.........+...-|+.
T Consensus 153 ----~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~--------- 219 (259)
T d2ae2a_ 153 ----PYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALR--------- 219 (259)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTC---------
T ss_pred ----ccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCC---------
Confidence 345789999999999999988764 79999999999976521 11111223444444444432
Q ss_pred eeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+..++|+|++++.++.... .-+| +++.+.+|-
T Consensus 220 ---R~g~pedvA~~v~fL~S~~s~~itG-----------~~i~VDGG~ 253 (259)
T d2ae2a_ 220 ---RMGEPKELAAMVAFLCFPAASYVTG-----------QIIYVDGGL 253 (259)
T ss_dssp ---SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred ---CCcCHHHHHHHHHHHhCchhCCCcC-----------cEEEECCCe
Confidence 25668999999998886433 3344 889888764
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.5e-22 Score=192.41 Aligned_cols=230 Identities=15% Similarity=0.097 Sum_probs=160.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
++|++|||||++.||+++++.|+++|++|++++|+.+..++...... ......++.++.+|++|+++++++++.+
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~-~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALH-EQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 80 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-TTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH-HhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999996543222111111 1122347899999999999999888654
Q ss_pred -CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHh----c--CCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS----V--NPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~----~--~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
++|++|||||... .++.++.+++|+.++..+..++.. . +...+||++||.+.+-+. +
T Consensus 81 G~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~------------~ 144 (254)
T d2gdza1 81 GRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV------------A 144 (254)
T ss_dssp SCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC------------T
T ss_pred CCcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCC------------C
Confidence 6899999999853 356788999999998888776532 2 222479999998754221 3
Q ss_pred CCChHHHHHHHHHHHHHH--HHH---HhCCcEEEEeeCcccCCCCCCCC------cHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 266 PASLYAATKKAGEEIAHT--YNH---IYGLALTGLRFFTVYGPWGRPDM------AYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~--~~~---~~gi~~~ilRp~~v~G~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
....|+.+|.+.+.+.+. ++. .+|+++++|+||.|-.+...... ....+.+.+.+.-|
T Consensus 145 ~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~p----------- 213 (254)
T d2gdza1 145 QQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIK----------- 213 (254)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHHH-----------
T ss_pred CccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcCC-----------
Confidence 456899999999999875 333 35899999999999654210000 00001111111111
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCcccHHH
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSPVPVGR 387 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~vt~~e 387 (476)
...+..++|+|++++.++.++. -+| +++.+.++..+.++|
T Consensus 214 -~~r~~~pedvA~~v~fL~s~~~-itG-----------~~i~VdGG~~~~~~~ 253 (254)
T d2gdza1 214 -YYGILDPPLIANGLITLIEDDA-LNG-----------AIMKITTSKGIHFQD 253 (254)
T ss_dssp -HHCCBCHHHHHHHHHHHHHCTT-CSS-----------CEEEEETTTEEEECC
T ss_pred -CCCCcCHHHHHHHHHHHHcCCC-CCC-----------CEEEECCCCeeeccc
Confidence 1125667999999999997654 444 899999887665543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.86 E-value=1.8e-21 Score=184.46 Aligned_cols=226 Identities=16% Similarity=0.106 Sum_probs=163.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||+++++.|+++|++|++++|+.+ ..+..........++.++.+|++|+++++++++.+
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD----VGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKA 79 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999543 22333333334558999999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++. +.+...+||++||.+.+-+.
T Consensus 80 ~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~---------- 149 (251)
T d1zk4a1 80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD---------- 149 (251)
T ss_dssp HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC----------
T ss_pred hCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccC----------
Confidence 68999999998432 33456677899999999999988754 33433379999998754221
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
+....|+.+|.+.+.+.+.++.+ +||+++.|.||.|..+....... ...........|+ .
T Consensus 150 --~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~-~~~~~~~~~~~pl------------~ 214 (251)
T d1zk4a1 150 --PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG-AEEAMSQRTKTPM------------G 214 (251)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTT-HHHHHTSTTTCTT------------S
T ss_pred --CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCC-HHHHHHHHhCCCC------------C
Confidence 34568999999999998887654 47999999999997763211100 1111111111111 2
Q ss_pred eceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 338 DFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+..++|+|++++.++.... .-+| +++.+.+|-
T Consensus 215 R~~~pedvA~~v~fL~S~~s~~itG-----------~~i~vDGG~ 248 (251)
T d1zk4a1 215 HIGEPNDIAYICVYLASNESKFATG-----------SEFVVDGGY 248 (251)
T ss_dssp SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred CCcCHHHHHHHHHHHhCchhCCCcC-----------cEEEECccc
Confidence 36788999999998875433 3343 889888763
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.86 E-value=2.7e-21 Score=184.00 Aligned_cols=225 Identities=17% Similarity=0.113 Sum_probs=166.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
.+|++|||||+++||+++++.|+++|++|++.+|+.+..++..++... ...++..+.+|++|+++++++++.+
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~---~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELRE---AGVEADGRTCDVRSVPEIEALVAAVVERY 77 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999999999965433332222211 1347899999999999998888754
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh------cCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS------VNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~------~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|++|||||.... +.+.++.+..+++|+.++..+++++.. .+. .++|++||...+.+.
T Consensus 78 g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~-g~Ii~i~S~~~~~~~--------- 147 (257)
T d2rhca1 78 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGT-GRIVNIASTGGKQGV--------- 147 (257)
T ss_dssp CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTE-EEEEEECCGGGTSCC---------
T ss_pred CCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCC-ccccccccccccccc---------
Confidence 68999999997432 345566778999999999999998753 233 389999998764322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC---------CCCcHHHHHHHHHcCCceEEEee
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR---------PDMAYFFFTKDILQGKTIDVYKT 329 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~---------~~~~~~~~~~~~~~g~~~~~~~~ 329 (476)
+....|+.+|.+.+.+.+.++.++ ||++++|.||.|-.|... .........+.+.+.-|+.
T Consensus 148 ---~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Plg---- 220 (257)
T d2rhca1 148 ---VHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIG---- 220 (257)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTSTTS----
T ss_pred ---ccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCCCC----
Confidence 345789999999999999998875 699999999999665210 0112234455555554442
Q ss_pred CCCCceeEeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCC
Q 011841 330 QDDREVARDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 330 ~~~~~~~~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
.+..++|+|++++.++... ..-+| +++.+.+|
T Consensus 221 --------R~~~pedia~~v~fL~S~~s~~itG-----------~~i~vDGG 253 (257)
T d2rhca1 221 --------RYVQPSEVAEMVAYLIGPGAAAVTA-----------QALNVCGG 253 (257)
T ss_dssp --------SCBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTT
T ss_pred --------CCcCHHHHHHHHHHHhCchhcCCcC-----------ceEEECcC
Confidence 2567899999999888543 33344 88988776
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.86 E-value=1.2e-21 Score=186.27 Aligned_cols=228 Identities=14% Similarity=0.105 Sum_probs=164.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||+++||+++++.|+++|++|++++|+.+. .+....+. ..++..+.+|++|+++++++++.+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~----l~~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEA----ARATAAEI--GPAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHH----HHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHHh--CCceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999995432 22222222 347889999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... +.+.++.+..+++|+.++..+++++. +.+...+||++||.+.+-+.
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~---------- 146 (256)
T d1k2wa_ 77 WGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGE---------- 146 (256)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----------
T ss_pred hCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcccc----------
Confidence 78999999997442 33456677899999999999887642 33333489999998764322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC---------CCcHHHHHHHHHcCCceEEEeeC
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP---------DMAYFFFTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~ 330 (476)
.....|+.+|.+.+.+.+.++.++ ||+++.|.||.+-.|.... ........+.+.+.-|+
T Consensus 147 --~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl------ 218 (256)
T d1k2wa_ 147 --ALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAVPF------ 218 (256)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHSTT------
T ss_pred --ccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcCCC------
Confidence 445789999999999999888664 8999999999998763110 00000112222222222
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
..+..++|+|.+++.++.... .-+| +++.+.+|..++
T Consensus 219 ------gR~~~p~evA~~v~fL~S~~a~~iTG-----------~~i~vDGG~~ms 256 (256)
T d1k2wa_ 219 ------GRMGRAEDLTGMAIFLATPEADYIVA-----------QTYNVDGGNWMS 256 (256)
T ss_dssp ------SSCBCHHHHHHHHHHTTSGGGTTCCS-----------CEEEESTTSSCC
T ss_pred ------CCCcCHHHHHHHHHHHhCchhCCccC-----------ceEEECcchhhC
Confidence 235678999999998775432 3344 899998887553
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.86 E-value=3.2e-21 Score=182.92 Aligned_cols=223 Identities=15% Similarity=0.083 Sum_probs=160.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||++++++|+++|++|++++|+.+ ...+...+. ...+.++.+|++|+++++++++.+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~----~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE----EGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHh--CCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999543 222222222 247899999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... +...++.+..+++|+.++..+.+++. +.+. .+||++||.+.+...
T Consensus 77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~-G~II~isS~~~~~~~---------- 145 (254)
T d1hdca_ 77 FGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGG-GSIVNISSAAGLMGL---------- 145 (254)
T ss_dssp HSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC----------
T ss_pred cCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCC-Ceecccccchhcccc----------
Confidence 68999999997443 33455667899999999999888763 3443 499999998764322
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.....|+.+|.+.+.+.+.++.++ |+++++|.||.|..+ +.........-... .......+
T Consensus 146 --~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~----------~~~~~~~~~~~~~~----~~~pl~R~ 209 (254)
T d1hdca_ 146 --ALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTP----------MTAETGIRQGEGNY----PNTPMGRV 209 (254)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCH----------HHHHHTCCCSTTSC----TTSTTSSC
T ss_pred --cchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCc----------cchhcCHHHHHHHH----hCCCCCCC
Confidence 345789999999999999988764 799999999999765 11111111100000 00001112
Q ss_pred -eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 340 -TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 340 -v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
+.++|+|++++.++.... .-+| +++.+.+|..
T Consensus 210 g~~PedvA~~v~fL~S~~a~~itG-----------~~i~vDGG~t 243 (254)
T d1hdca_ 210 GNEPGEIAGAVVKLLSDTSSYVTG-----------AELAVDGGWT 243 (254)
T ss_dssp B-CHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTT
T ss_pred CCCHHHHHHHHHHHhchhhCCCCC-----------ceEEeCCCcc
Confidence 357999999998885432 3344 8999988753
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.86 E-value=9.9e-21 Score=181.15 Aligned_cols=231 Identities=13% Similarity=0.116 Sum_probs=165.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||+.++++|+++|++|++++|+.+ ..++...+......+.++.+|++|+++++++++.+
T Consensus 4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD----HGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999543 23333334444557888999999999999888653
Q ss_pred --CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|++|||||.... ....++.+..+++|+.++..+.+++. +.+. .++|++||...+...
T Consensus 80 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~ii~iss~~~~~~~-------- 150 (268)
T d2bgka1 80 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKK-GSIVFTASISSFTAG-------- 150 (268)
T ss_dssp HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTC-EEEEEECCGGGTCCC--------
T ss_pred cCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCC-CCccccccccccccc--------
Confidence 78999999997432 22345567789999999998888753 3343 389999997754221
Q ss_pred CCCCCC-CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC--CcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 261 HRTDQP-ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD--MAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 261 ~~~~~p-~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
.+ ...|+.+|.+.+.+.+.++.++ ||++++|.||.|..|..... ...........+....
T Consensus 151 ----~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~---------- 216 (268)
T d2bgka1 151 ----EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANL---------- 216 (268)
T ss_dssp ----TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSS----------
T ss_pred ----cccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhcccc----------
Confidence 22 2379999999999999988764 79999999999988753321 1111111111111110
Q ss_pred eeEeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCCcccH
Q 011841 335 VARDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTSPVPV 385 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~~vt~ 385 (476)
...+..++|+|++++.++... ..-+| +++.+.+|-..+.
T Consensus 217 -~gr~~~pedvA~~v~fL~S~~s~~itG-----------q~i~VDGG~t~~~ 256 (268)
T d2bgka1 217 -KGTLLRAEDVADAVAYLAGDESKYVSG-----------LNLVIDGGYTRTN 256 (268)
T ss_dssp -CSCCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGCC
T ss_pred -CCCCcCHHHHHHHHHHHhChhhCCccC-----------ceEEECcCcccCC
Confidence 112567899999999888543 33344 8999988764433
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.86 E-value=1.3e-21 Score=186.94 Aligned_cols=230 Identities=11% Similarity=0.079 Sum_probs=159.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||++++++|+++|++|++++|+.+..++..++.........++..+.+|++|+++++++++.+
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 82 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999655433333333332233447999999999999999888754
Q ss_pred --CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCcc-ccCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSS-VYGLNTQVPF 257 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~-vyg~~~~~~~ 257 (476)
++|++|||||.... ..+.++++..+++|+.++..+.+++.. .+ ..+|+++|+. .+.+.
T Consensus 83 ~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~--g~iI~~~S~~~~~~~~----- 155 (264)
T d1spxa_ 83 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIASGLHAT----- 155 (264)
T ss_dssp HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTTSSSSCC-----
T ss_pred hCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc--CcceeeeeeccccccC-----
Confidence 68999999997421 123355678899999999888887642 32 2566666644 22111
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC-------CcHHHHHHHHHcCCceEEE
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD-------MAYFFFTKDILQGKTIDVY 327 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~-------~~~~~~~~~~~~g~~~~~~ 327 (476)
+....|+.+|.+.+.+.+.++.++ ||+++.|.||.|-.+..... .........+.+.-|+
T Consensus 156 -------~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl--- 225 (264)
T d1spxa_ 156 -------PDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPA--- 225 (264)
T ss_dssp -------TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--------------HHHHHHHHHHCTT---
T ss_pred -------CCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHhcCCC---
Confidence 344679999999999999988764 89999999999977643211 0111222223322222
Q ss_pred eeCCCCceeEeceeHHHHHHHHHHHHhhc--CcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 328 KTQDDREVARDFTYIDDVVKGCVGALDTA--GKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~a~~~~l~~~--~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+..++|+|++++.++..+ ..-+| +++.+.+|..
T Consensus 226 ---------~R~g~pedvA~~v~fL~S~~~s~~itG-----------~~i~vDGG~s 262 (264)
T d1spxa_ 226 ---------GVMGQPQDIAEVIAFLADRKTSSYIIG-----------HQLVVDGGSS 262 (264)
T ss_dssp ---------SSCBCHHHHHHHHHHHHCHHHHTTCCS-----------CEEEESTTGG
T ss_pred ---------CCCcCHHHHHHHHHHHhCCcccCCccC-----------ceEEeCCChh
Confidence 12567899999999988643 33454 8999988753
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.86 E-value=4.9e-21 Score=182.46 Aligned_cols=225 Identities=16% Similarity=0.134 Sum_probs=164.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|++|||||++.||+++++.|+++|++|++++|+.+..+ +...... ...++..+.+|++|+++++++++.+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~----~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALE----KAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVR 78 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH----HHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999544322 2222221 2347899999999999999888754
Q ss_pred ---CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++. +.+. .+||++||.+.+.+.
T Consensus 79 ~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~-G~II~isS~~~~~~~-------- 149 (260)
T d1zema1 79 DFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNY-GRIVNTASMAGVKGP-------- 149 (260)
T ss_dssp HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHSCC--------
T ss_pred HhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcC-CCCCeeechhhccCC--------
Confidence 78999999997432 33456677899999999998888753 3333 499999998765322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCC--------------CCCCcHHHHHHHHHcCCc
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWG--------------RPDMAYFFFTKDILQGKT 323 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~--------------~~~~~~~~~~~~~~~g~~ 323 (476)
+....|+.+|.+.+.+.+.++.++ ||+++.|.||.|-.+.. ........+.+.+...-|
T Consensus 150 ----~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P 225 (260)
T d1zema1 150 ----PNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQMIGSVP 225 (260)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHHHHHTST
T ss_pred ----cchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHHHHHhcCC
Confidence 345689999999999999988775 79999999999976521 011112334444444444
Q ss_pred eEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 324 IDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
+. .+..++|+|++++.++.... .-+| +++.+.+|
T Consensus 226 l~------------R~g~pedvA~~v~fL~S~~s~~itG-----------~~i~VDGG 260 (260)
T d1zema1 226 MR------------RYGDINEIPGVVAFLLGDDSSFMTG-----------VNLPIAGG 260 (260)
T ss_dssp TS------------SCBCGGGSHHHHHHHHSGGGTTCCS-----------CEEEESCC
T ss_pred CC------------CCcCHHHHHHHHHHHhCchhcCccC-----------CeEEeCCC
Confidence 42 24567999999998886533 2333 88887664
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.85 E-value=2.1e-21 Score=186.40 Aligned_cols=231 Identities=12% Similarity=0.073 Sum_probs=163.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+++||||++.||+++++.|+++|++|++.+|+.+..++..++.........++..+.+|++|+++++++++.+
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 81 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK 81 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999654333333333332223447899999999999998888754
Q ss_pred --CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|++|||||.... ..+.++.+..+++|+.++..+.+++. +.+. .+++++||.+.....
T Consensus 82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-g~ii~~ss~~~~~~~-------- 152 (274)
T d1xhla_ 82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKG-EIVNVSSIVAGPQAH-------- 152 (274)
T ss_dssp HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEECCGGGSSSCC--------
T ss_pred cCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccccc-ccccchhhhhccccC--------
Confidence 68999999986322 12334567899999999998888764 3333 378888876543221
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC---CCCc-H---HHHHHHHHcCCceEEEeeC
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR---PDMA-Y---FFFTKDILQGKTIDVYKTQ 330 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~---~~~~-~---~~~~~~~~~g~~~~~~~~~ 330 (476)
.....|+.+|.+.+.+.+.++.++ ||+++.|.||.|-.|... .... . ..+.....+.-|+
T Consensus 153 ----~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iPl------ 222 (274)
T d1xhla_ 153 ----SGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIPV------ 222 (274)
T ss_dssp ----TTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT------
T ss_pred ----CCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCCC------
Confidence 345689999999999999888764 899999999999876211 0001 1 1111211122222
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhh--cCcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDT--AGKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~--~~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+..++|+|++++.++.. ...-+| +++.+.+|..
T Consensus 223 ------gR~g~pediA~~v~fL~S~d~s~~itG-----------~~i~vDGG~~ 259 (274)
T d1xhla_ 223 ------GHCGKPEEIANIIVFLADRNLSSYIIG-----------QSIVADGGST 259 (274)
T ss_dssp ------SSCBCHHHHHHHHHHHHCHHHHTTCCS-----------CEEEESTTGG
T ss_pred ------CCCcCHHHHHHHHHHHcCCccccCccC-----------cEEEeCcCHH
Confidence 2356789999999988853 344454 8999988754
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.85 E-value=1.9e-20 Score=177.79 Aligned_cols=225 Identities=17% Similarity=0.105 Sum_probs=160.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
|.+|||||++.||++++++|+++|++|++++|+.+..++..+... ....++..+.+|++|+++++++++.+ +
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~---~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEIN---QAGGHAVAVKVDVSDRDQVFAAVEQARKTLGG 78 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 567999999999999999999999999999996543222222221 12347889999999999998887654 6
Q ss_pred ccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
+|++|||||.... +.+.++.+..+++|+.++..+++++ .+.+...+||++||.+.+... +
T Consensus 79 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~------------~ 146 (255)
T d1gega_ 79 FDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN------------P 146 (255)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC------------T
T ss_pred ccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccC------------c
Confidence 8999999997432 3345667789999999999988775 344444479999998754222 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCC---------CCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRP---------DMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~---------~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
....|+.+|.+.+.+.+.++.++ ||++++|.||.|-.|.... ..........+.+.-|+
T Consensus 147 ~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl--------- 217 (255)
T d1gega_ 147 ELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITL--------- 217 (255)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTT---------
T ss_pred ccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCC---------
Confidence 45789999999999999988664 8999999999996651100 00001122223333332
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|++++.++.... .-+| +++.+.+|-
T Consensus 218 ---~R~~~peevA~~v~fL~S~~a~~itG-----------~~i~vDGG~ 252 (255)
T d1gega_ 218 ---GRLSEPEDVAACVSYLASPDSDYMTG-----------QSLLIDGGM 252 (255)
T ss_dssp ---CSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESSSS
T ss_pred ---CCCcCHHHHHHHHHHHhCchhCCccC-----------cEEEecCCE
Confidence 235678999999998885432 2344 889888874
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.85 E-value=5.7e-21 Score=180.23 Aligned_cols=223 Identities=15% Similarity=0.045 Sum_probs=161.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----C
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----P 193 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~ 193 (476)
+.||||||++.||++++++|+++|++|++.++++....+...+.... ...++.++.+|++|+++++++++.+ +
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~--~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEA--YGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH--HTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHH--cCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 47999999999999999999999999998876443211111111111 1347889999999999998888754 7
Q ss_pred ccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
+|++|||||.... +.+.++.+..+++|+.++..+.+++ ++.+. .+||++||.+.+-+. .
T Consensus 80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~~~~~~~------------~ 146 (244)
T d1edoa_ 80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIASVVGLIGN------------I 146 (244)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHCC------------T
T ss_pred CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCC-cEEEEEcChhhcCCC------------C
Confidence 8999999997442 3455677789999999999888875 33443 499999998754322 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
....|+.+|.+.+.+.+.++.++ |+++++|.||.+-.+.... ....+.+.+.+..|+. .+..+
T Consensus 147 ~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl~------------R~~~p 212 (244)
T d1edoa_ 147 GQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK--LGEDMEKKILGTIPLG------------RTGQP 212 (244)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT--TCHHHHHHHHTSCTTC------------SCBCH
T ss_pred CCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHHH--hhHHHHHHHHhcCCCC------------CCcCH
Confidence 45789999999999999998775 8999999999997653211 1123444455444432 25678
Q ss_pred HHHHHHHHHHHhhc--CcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 343 DDVVKGCVGALDTA--GKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 343 ~Dva~a~~~~l~~~--~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+|+|++++.+...+ ..-+| +++.+.+|-
T Consensus 213 ~dvA~~v~fLa~S~~a~~itG-----------~~i~vdGG~ 242 (244)
T d1edoa_ 213 ENVAGLVEFLALSPAASYITG-----------QAFTIDGGI 242 (244)
T ss_dssp HHHHHHHHHHHHCSGGGGCCS-----------CEEEESTTT
T ss_pred HHHHHHHHHHHCCchhcCCcC-----------CeEEeCCCe
Confidence 99999999875333 33444 888888763
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.85 E-value=1.2e-20 Score=180.97 Aligned_cols=232 Identities=14% Similarity=0.072 Sum_probs=160.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||+++++.|+++|++|++++|+.+..++..+..........++..+.+|++|+++++++++.+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999654333322222222222346899999999999999888754
Q ss_pred --CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhc---CCCCeEEEecC-ccccCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSV---NPQPSIVWASS-SSVYGLNTQVPFS 258 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~---~~~~~~V~~SS-~~vyg~~~~~~~~ 258 (476)
++|++|||||.... +...++.+..+++|+.++..+.+++... +. ..+|+++| .+...+
T Consensus 83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~Ss~a~~~~------- 154 (272)
T d1xkqa_ 83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQA------- 154 (272)
T ss_dssp HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSC-------
T ss_pred hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC-CccccccchhccccC-------
Confidence 68999999997432 1122246678899999999988876431 22 25665555 343211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC----CCCcHHHHHH---HHHcCCceEEEe
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR----PDMAYFFFTK---DILQGKTIDVYK 328 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~----~~~~~~~~~~---~~~~g~~~~~~~ 328 (476)
.+....|+.+|.+.+.+.+.++.++ ||++++|.||.|-.+... .+.....+.. ...+.-|+
T Consensus 155 -----~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl---- 225 (272)
T d1xkqa_ 155 -----QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIPI---- 225 (272)
T ss_dssp -----CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCTT----
T ss_pred -----CCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHhcCCCC----
Confidence 1345679999999999999988764 899999999999766211 1111111111 11111122
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhc--CcCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTA--GKSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~--~~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
..+..++|+|++++.++..+ ..-+| +++.+.+|..+
T Consensus 226 --------gR~g~pediA~~v~fL~S~~as~~iTG-----------~~i~vDGG~~l 263 (272)
T d1xkqa_ 226 --------GAAGKPEHIANIILFLADRNLSFYILG-----------QSIVADGGTSL 263 (272)
T ss_dssp --------SSCBCHHHHHHHHHHHHCHHHHTTCCS-----------CEEEESTTGGG
T ss_pred --------CCCcCHHHHHHHHHHHhCcchhCCccC-----------eEEEeCcCHHH
Confidence 13667899999999988533 33454 89999887654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.84 E-value=2.5e-20 Score=177.28 Aligned_cols=227 Identities=15% Similarity=0.082 Sum_probs=162.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||++.||++++++|+++|++|++++|+.+..++..+... .....+.++.+|++|.++++++++.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~---~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 80 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR---EKGLNVEGSVCDLLSRTERDKLMQTVAHV 80 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---hcCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999996543332222211 12346788999999999988776532
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
.+|+||||||.... +.+.++.+..+++|+.++..+.+++. +.+. .++|++||.....+.
T Consensus 81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~-g~ii~isS~~~~~~~--------- 150 (258)
T d1ae1a_ 81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQN-GNVIFLSSIAGFSAL--------- 150 (258)
T ss_dssp TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-EEEEEECCGGGTSCC---------
T ss_pred hCCCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccc-ccccccccccccccc---------
Confidence 57999999997442 33556677899999999998888753 3333 499999998865322
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC----CcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD----MAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
+....|+.+|.+.+.+++.++.++ ||++++|.||.+..|..... .........+.+..|+
T Consensus 151 ---~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl---------- 217 (258)
T d1ae1a_ 151 ---PSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPM---------- 217 (258)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTT----------
T ss_pred ---ccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCC----------
Confidence 346789999999999999988774 79999999999988743211 0112333444433333
Q ss_pred eeEeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|.+++.++... ..-+| +++.+.+|-
T Consensus 218 --gR~~~pediA~~v~fL~S~~s~~itG-----------~~i~vDGG~ 252 (258)
T d1ae1a_ 218 --GRAGKPQEVSALIAFLCFPAASYITG-----------QIIWADGGF 252 (258)
T ss_dssp --CSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTG
T ss_pred --CCCcCHHHHHHHHHHHhChhhCCCcC-----------cEEEeCCCe
Confidence 12678899999999988543 33344 888888764
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=3.2e-20 Score=176.35 Aligned_cols=228 Identities=15% Similarity=0.047 Sum_probs=160.5
Q ss_pred CCCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|++|||||+| .||++++++|+++|++|++.+|.++ .................+.+|++|+++++++++.+
T Consensus 6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~----~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (256)
T d1ulua_ 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER----LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVK 81 (256)
T ss_dssp CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH----HHHHHHHhhhccCcccccccccCCHHHHHHHHHHHH
Confidence 5789999999987 8999999999999999999988532 12222222223446788999999999999888653
Q ss_pred ----CccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|++|||||.... +...++....+++|+.++..+++.+...-. ..++|++||.......
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~------- 154 (256)
T d1ulua_ 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVV------- 154 (256)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBC-------
T ss_pred HhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCC-------
Confidence 68999999987432 222334556889999999999887653211 1379999998764322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
+....|+.+|.+.+.+.+.++.++ |+++++|.||.|..+..........+.+.+.+.-|+.
T Consensus 155 -----~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~----------- 218 (256)
T d1ulua_ 155 -----PKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLR----------- 218 (256)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC----------CHHHHHHHHHHSTTS-----------
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCCC-----------
Confidence 455789999999999999988775 7999999999998875433222234444454444431
Q ss_pred EeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCCc
Q 011841 337 RDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.+..++|+|++++.++..... -+| +++.+.+|..
T Consensus 219 -R~~~pedvA~~v~fL~S~~s~~itG-----------~~i~VDGG~~ 253 (256)
T d1ulua_ 219 -RNITQEEVGNLGLFLLSPLASGITG-----------EVVYVDAGYH 253 (256)
T ss_dssp -SCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred -CCcCHHHHHHHHHHHhCchhCCccC-----------CeEEECcCEe
Confidence 255689999999988865432 344 8999988754
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.2e-20 Score=183.10 Aligned_cols=232 Identities=13% Similarity=0.099 Sum_probs=165.4
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCCHHHHHHhhcc
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
.+.++|++|||||++.||++++++|+++|++|++++|+.+..+...++...... ...++..+.+|++|+++++++++.
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~ 87 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS 87 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence 347899999999999999999999999999999999965433333333322222 234788999999999999988865
Q ss_pred C-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh----cCCCCeEEEecCccccCCCCCCCCC
Q 011841 192 V-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS----VNPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 192 ~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
+ ++|++|||||.... ....++.+..+++|+.++..+.+++.. .+. .++|++|+....+
T Consensus 88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~Ii~~ss~~~~~-------- 158 (297)
T d1yxma1 88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIVPTKAG-------- 158 (297)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECCCCTTC--------
T ss_pred HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc-ccccccccccccc--------
Confidence 3 68999999987432 334566778999999999999887643 333 2788887654321
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCC--cHHHHHHHHHcCCceEEEeeCCCC
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDM--AYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.+....|+.+|.+.+.+.+.++.++ ||++++|.||.|..+...... .-..+.+.+.+.-|+
T Consensus 159 -----~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~pl--------- 224 (297)
T d1yxma1 159 -----FPLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPA--------- 224 (297)
T ss_dssp -----CTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTT---------
T ss_pred -----ccccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCC---------
Confidence 1345789999999999999988775 799999999999876422110 011122222222222
Q ss_pred ceeEeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+..++|+|.+++.++... ..-+| +++.+.+|..
T Consensus 225 ---gR~g~pedvA~~v~fL~Sd~s~~iTG-----------~~i~VDGG~s 260 (297)
T d1yxma1 225 ---KRIGVPEEVSSVVCFLLSPAASFITG-----------QSVDVDGGRS 260 (297)
T ss_dssp ---SSCBCTHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred ---CCCcCHHHHHHHHHHHhCchhcCcCC-----------cEEEeCcChh
Confidence 23566899999999888543 33344 8999988753
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.84 E-value=1.4e-19 Score=171.64 Aligned_cols=220 Identities=15% Similarity=0.112 Sum_probs=158.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC-CHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN-DAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~l~~~~~~~-- 192 (476)
.++|+||||||+++||..++++|+++|++|++++|..+... ...+ ........++.++.+|++ +.++++++++.+
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~-~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPT-ALAE-LKAINPKVNITFHTYDVTVPVAESKKLLKKIFD 80 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHH-HHHH-HHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHH-HHHH-HHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999988765421 1221 122333458999999998 666677766543
Q ss_pred ---CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHh------cCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKS------VNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~------~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
++|++|||||.. .+++.+..+++|+.|+.++.+++.. .+...+||++||...+.+.
T Consensus 81 ~~g~iDilvnnAG~~----~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~----------- 145 (254)
T d1sbya1 81 QLKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI----------- 145 (254)
T ss_dssp HHSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-----------
T ss_pred HcCCCCEEEeCCCCC----CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCC-----------
Confidence 689999999974 3577889999999999999887643 1222479999998865322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCC---CCCCCcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW---GRPDMAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.....|+.+|.+...+.+.++.++ |++++.|.||.|..+- ..........+.....++
T Consensus 146 -~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~--------------- 209 (254)
T d1sbya1 146 -HQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTFNSWLDVEPRVAELLLSH--------------- 209 (254)
T ss_dssp -TTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSCCCGGGSCTTHHHHHTTS---------------
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCccccccccchhHHHHHHhccccC---------------
Confidence 456789999999999999888664 8999999999998751 111000001111111121
Q ss_pred eceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 338 DFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
....++++|++++.+++... +| +++.+.++.
T Consensus 210 ~~~~~e~va~~~~~~~~~~~--tG-----------~vi~vdgG~ 240 (254)
T d1sbya1 210 PTQTSEQCGQNFVKAIEANK--NG-----------AIWKLDLGT 240 (254)
T ss_dssp CCEEHHHHHHHHHHHHHHCC--TT-----------CEEEEETTE
T ss_pred CCCCHHHHHHHHHHhhhCCC--CC-----------CEEEECCCE
Confidence 23357999999998887653 33 788887763
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.5e-20 Score=177.24 Aligned_cols=204 Identities=14% Similarity=0.024 Sum_probs=153.1
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
....||+||||||++.||++++++|+++|++|++++|+.+..++..++... ...++..+.+|++|+++++++++.+
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~~i~ 79 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKG---LGAKVHTFVVDCSNREDIYSSAKKVK 79 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 347899999999999999999999999999999999965433332222221 2357899999999999988887643
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSES 260 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~ 260 (476)
++|++|||||.... +...+..+..+++|+.|+..+++++ ++.+. ++||++||...+-+.
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~-G~Iv~isS~~~~~~~-------- 150 (244)
T d1yb1a_ 80 AEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNH-GHIVTVASAAGHVSV-------- 150 (244)
T ss_dssp HHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEEECCCC-CCCH--------
T ss_pred HHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCC-ceEEEeecchhcCCC--------
Confidence 68999999998543 3445567789999999998888764 34554 489999998865322
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH------hCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 261 HRTDQPASLYAATKKAGEEIAHTYNHI------YGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 261 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~------~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
+....|+.+|.+.+.+.+.++.+ .|+++++|+||.|-.+..... . .
T Consensus 151 ----~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~-~-----------------------~ 202 (244)
T d1yb1a_ 151 ----PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP-S-----------------------T 202 (244)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT-H-----------------------H
T ss_pred ----CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCc-C-----------------------c
Confidence 33567999999999999998865 379999999999876632210 0 0
Q ss_pred eeEeceeHHHHHHHHHHHHhhcC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
.....+.++|+|+.++..+....
T Consensus 203 ~~~~~~~pe~va~~i~~~~~~~~ 225 (244)
T d1yb1a_ 203 SLGPTLEPEEVVNRLMHGILTEQ 225 (244)
T ss_dssp HHCCCCCHHHHHHHHHHHHHTTC
T ss_pred cccCCCCHHHHHHHHHHHHhcCC
Confidence 01123467999999998887754
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.83 E-value=1.7e-20 Score=177.81 Aligned_cols=224 Identities=15% Similarity=0.084 Sum_probs=159.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||+++++.|+++|++|++++|+.+ ..++...+. ..+..++.+|++|+++++++++.+
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~----~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (253)
T d1hxha_ 4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA----AGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRR 77 (253)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH----HHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHh--CCCeEEEEeecCCHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998543 222222222 346888999999999998888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC--CCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN--PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~--~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|++|||||.... +.+.++.+..+++|+.++..+++++...- ...+||++||.+.+-+.
T Consensus 78 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~------------ 145 (253)
T d1hxha_ 78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPI------------ 145 (253)
T ss_dssp HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCC------------
T ss_pred hCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCc------------
Confidence 68999999997432 33456677899999999998888764311 12489999998754221
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeeCcccCCCCC---CCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGR---PDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~G~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
+....|+.+|.+.+.+.+.++.++ +|+++.|.||.|..+... ++... +........ ....
T Consensus 146 ~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~----~~~~~~~~~--------~~~~ 213 (253)
T d1hxha_ 146 EQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQASLPKGVS----KEMVLHDPK--------LNRA 213 (253)
T ss_dssp TTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHHHSCTTCC----HHHHBCBTT--------TBTT
T ss_pred cccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHhhCcchhh----HHHHHhCcc--------cccc
Confidence 345689999999999988877553 499999999999765110 00000 011111100 1111
Q ss_pred EeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCC
Q 011841 337 RDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
..+..++|+|++++.++... ..-+| +++++.++
T Consensus 214 gr~~~pedvA~~v~fL~S~~s~~itG-----------~~i~VDGG 247 (253)
T d1hxha_ 214 GRAYMPERIAQLVLFLASDESSVMSG-----------SELHADNS 247 (253)
T ss_dssp CCEECHHHHHHHHHHHHSGGGTTCCS-----------CEEEESSS
T ss_pred CCCCCHHHHHHHHHHHhChhhCCCcC-----------cEEEECcc
Confidence 24677899999999887543 33344 88988776
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=2.5e-20 Score=177.19 Aligned_cols=217 Identities=17% Similarity=0.077 Sum_probs=153.0
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
...++|+||||||++.||.++++.|+++|++|++++|+.+..++..++.... .....+..+.+|++|+++++++++.+
T Consensus 6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~-~~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSA-GYPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-CCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999654332222222221 11247889999999999999888754
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCC-CCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNP-QPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~-~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|++|||||.... +.+.++.+..+++|+.+...+.+.+ ++.+. ..++|++||.+.+...
T Consensus 85 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------- 157 (257)
T d1xg5a_ 85 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL------- 157 (257)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC-------
T ss_pred HhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC-------
Confidence 68999999998432 3455667789999999988877765 33332 3499999998754221
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHH-----hCCcEEEEeeCcccCCCCC--CCCcHHHHHHHHHcCCceEEEeeCCC
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHI-----YGLALTGLRFFTVYGPWGR--PDMAYFFFTKDILQGKTIDVYKTQDD 332 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-----~gi~~~ilRp~~v~G~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~ 332 (476)
+......|+.+|.+.+.+.+.++.+ +|+++++|.||.+-.+... .+.....+...
T Consensus 158 ---p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~--------------- 219 (257)
T d1xg5a_ 158 ---PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAAT--------------- 219 (257)
T ss_dssp ---SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHH---------------
T ss_pred ---CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhc---------------
Confidence 1123456999999999999988754 4799999999988654210 11111111111
Q ss_pred CceeEeceeHHHHHHHHHHHHhhcC
Q 011841 333 REVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 333 ~~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
.....++.++|+|++++.++..+.
T Consensus 220 -~~~~r~~~pedvA~~v~fL~s~~a 243 (257)
T d1xg5a_ 220 -YEQMKCLKPEDVAEAVIYVLSTPA 243 (257)
T ss_dssp -HC---CBCHHHHHHHHHHHHHSCT
T ss_pred -CCCCCCcCHHHHHHHHHHHhCChh
Confidence 111236779999999999886654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.83 E-value=3.5e-20 Score=176.53 Aligned_cols=234 Identities=15% Similarity=0.123 Sum_probs=168.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||+++||+++++.|+++|++|++++|+.+...+..++..... ..++..+.+|++|+++++++++.+
T Consensus 7 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 7 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF--GVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH--TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999998775544433333222 347899999999999998888643
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHR 262 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... +.+.++.+..+++|+.++..+.+++. +.+....++.+|+...+....... .
T Consensus 85 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~-----~ 159 (260)
T d1h5qa_ 85 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSL-----N 159 (260)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEET-----T
T ss_pred hCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecccccccccccc-----c
Confidence 68999999997432 33456677899999999988877643 334444677777766542221100 0
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEec
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDF 339 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 339 (476)
.......|+.+|.+.+.+.+.++.++ |+++++|.||.|-.+.... ....+.+.+.+.-|+. .+
T Consensus 160 ~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl~------------R~ 225 (260)
T d1h5qa_ 160 GSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAH--MDKKIRDHQASNIPLN------------RF 225 (260)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG--SCHHHHHHHHHTCTTS------------SC
T ss_pred cCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchhc--cCHHHHHHHHhcCCCC------------CC
Confidence 01345679999999999999988664 7999999999997764321 1134445555544442 24
Q ss_pred eeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 340 TYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 340 v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..++|+|++++.++.... .-+| +++.+.+|.
T Consensus 226 g~pedvA~~v~fL~S~~s~~itG-----------~~i~VDGG~ 257 (260)
T d1h5qa_ 226 AQPEEMTGQAILLLSDHATYMTG-----------GEYFIDGGQ 257 (260)
T ss_dssp BCGGGGHHHHHHHHSGGGTTCCS-----------CEEEECTTG
T ss_pred cCHHHHHHHHHHHhcchhCCCcC-----------ceEEECCCe
Confidence 567999999998875433 2343 889898875
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.83 E-value=3.5e-20 Score=174.28 Aligned_cols=200 Identities=14% Similarity=0.128 Sum_probs=149.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCe-------EEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDG-------VLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~-------V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
+.||||||+++||++++++|+++|++ |++.+|+.+.. .+...+.. ....+..+.+|++|+++++++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l----~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~ 77 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADL----EKISLECRAEGALTDTITADISDMADVRRLTT 77 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHH----HHHHHHHHTTTCEEEEEECCTTSHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHH----HHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH
Confidence 35899999999999999999999997 88888854322 22222222 23468889999999999988886
Q ss_pred cC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCC
Q 011841 191 VV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 191 ~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
.+ ++|++|||||.... +.+.++.+..+++|+.++..+++++. +.+. .++|++||.+.+.+.
T Consensus 78 ~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-G~Ii~isS~~~~~~~----- 151 (240)
T d2bd0a1 78 HIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHS-GHIFFITSVAATKAF----- 151 (240)
T ss_dssp HHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCGGGTSCC-----
T ss_pred HHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCC-CceEEEechhhcCCC-----
Confidence 54 68999999997442 34456677899999999988887753 4443 389999998765322
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
+....|+.+|.+.+.+.+.++.++ |++++.|.||.|-.+..... . ..
T Consensus 152 -------~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~~------------------~-----~~ 201 (240)
T d2bd0a1 152 -------RHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV------------------D-----DE 201 (240)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC------------------C-----ST
T ss_pred -------CCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhhc------------------C-----Hh
Confidence 345789999999999999988764 79999999999987632210 0 01
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCc
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
....+..++|+|++++.++..+..
T Consensus 202 ~~~~~~~PedvA~~v~~l~s~~~~ 225 (240)
T d2bd0a1 202 MQALMMMPEDIAAPVVQAYLQPSR 225 (240)
T ss_dssp TGGGSBCHHHHHHHHHHHHTSCTT
T ss_pred hHhcCCCHHHHHHHHHHHHcCCcc
Confidence 112345689999999999887653
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.83 E-value=1.3e-19 Score=172.40 Aligned_cols=229 Identities=17% Similarity=0.145 Sum_probs=162.8
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccC-
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
+..+|+||||||++.||.+++++|+++|++|++.+|.+.. ..+....... ...++..+.+|++|+++++++++..
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~---~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~ 79 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSK---AAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAV 79 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChH---HHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999988774432 1122222221 2347899999999999998888643
Q ss_pred ----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCcc-ccCCCCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSS-VYGLNTQVPFSESHR 262 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~-vyg~~~~~~~~E~~~ 262 (476)
++|++|||||.... ....+..+..+++|+.+...+++++...-. ..+++.++|.. .+.+.
T Consensus 80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~~---------- 149 (259)
T d1ja9a_ 80 SHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGI---------- 149 (259)
T ss_dssp HHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSC----------
T ss_pred HHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccCC----------
Confidence 68999999998433 234556678999999999999888754221 12566666543 33211
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCC-----------CCCCCcHHHHHHHHHcCCceEEEe
Q 011841 263 TDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW-----------GRPDMAYFFFTKDILQGKTIDVYK 328 (476)
Q Consensus 263 ~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~-----------~~~~~~~~~~~~~~~~g~~~~~~~ 328 (476)
+....|+.+|.+.+.+++.++.++ |+++++|+||.+-.+. .........+...+.+..|+.
T Consensus 150 --~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~--- 224 (259)
T d1ja9a_ 150 --PNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNPLK--- 224 (259)
T ss_dssp --CSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHHHTSTTS---
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHHhCCCCC---
Confidence 345679999999999999988764 7999999999986531 111122344555555554442
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+..++|||++++.++..... -+| +++.+.+|.
T Consensus 225 ---------R~g~p~eVa~~v~fL~S~~a~~itG-----------~~i~vDGG~ 258 (259)
T d1ja9a_ 225 ---------RIGYPADIGRAVSALCQEESEWING-----------QVIKLTGGG 258 (259)
T ss_dssp ---------SCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTC
T ss_pred ---------CCcCHHHHHHHHHHHhCchhcCCcC-----------ceEEeCCCC
Confidence 356789999999988866442 344 888887764
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.82 E-value=1.1e-19 Score=170.90 Aligned_cols=223 Identities=19% Similarity=0.178 Sum_probs=162.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|++|||||++.||..+++.|+++|++|++.+|+.+ ..++...+ + ..++.++++|++|+++++++++.+
T Consensus 3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~----~~~~~~~~-~-~~~~~~~~~Dls~~~~i~~~~~~i~~~ 76 (241)
T d2a4ka1 3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREER----LLAEAVAA-L-EAEAIAVVADVSDPKAVEAVFAEALEE 76 (241)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHT-C-CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHH-c-CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999543 12222222 1 347889999999999999888754
Q ss_pred --CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCC-eEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQP-SIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~-~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
++|++|||||.... ..+.++.+..+++|+.++..+.+++.....+. .++.+|+.+.... +
T Consensus 77 ~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~-------------~ 143 (241)
T d2a4ka1 77 FGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA-------------F 143 (241)
T ss_dssp HSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH-------------H
T ss_pred hCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccc-------------c
Confidence 68999999987432 33455667889999999999999876544333 4555555443211 2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeH
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYI 342 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v 342 (476)
....|+.+|.+.|.+.+.+++++ |+++++|.||.|-.+.... ......+.+.+..|+. .+..+
T Consensus 144 ~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~--~~~~~~~~~~~~~p~~------------r~~~p 209 (241)
T d2a4ka1 144 GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG--LPPWAWEQEVGASPLG------------RAGRP 209 (241)
T ss_dssp HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT--SCHHHHHHHHHTSTTC------------SCBCH
T ss_pred CccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHHh--hhHhHHHHHHhCCCCC------------CCcCH
Confidence 34579999999999999998886 6999999999997664321 1233444555544442 25678
Q ss_pred HHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 343 DDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 343 ~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
+|+|++++.++... ..-+| +++.+.+|..
T Consensus 210 ~dva~~v~fL~S~~s~~itG-----------~~i~vDGG~s 239 (241)
T d2a4ka1 210 EEVAQAALFLLSEESAYITG-----------QALYVDGGRS 239 (241)
T ss_dssp HHHHHHHHHHHSGGGTTCCS-----------CEEEESTTTT
T ss_pred HHHHHHHHHHhcchhCCCcC-----------ceEEeCCCcc
Confidence 99999999888653 33344 8888888754
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.82 E-value=1.6e-19 Score=175.44 Aligned_cols=215 Identities=17% Similarity=0.070 Sum_probs=151.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC-----CchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY-----DPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~-----~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
.++|++|||||+++||+++++.|+++|++|++.+|+.+.. .....+....... ......+|+.|.++++++++
T Consensus 5 l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~v~ 82 (302)
T d1gz6a_ 5 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR--RGGKAVANYDSVEAGEKLVK 82 (302)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH--TTCEEEEECCCGGGHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhh--cccccccccchHHHHHHHHH
Confidence 6899999999999999999999999999999999876532 1122222222211 33456789988877776665
Q ss_pred cC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCC
Q 011841 191 VV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 191 ~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
.+ ++|++|||||.... +.+.++.+..+++|+.++..+++++ ++.+. ++||++||.+.+-+.
T Consensus 83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-G~IV~isS~~~~~~~----- 156 (302)
T d1gz6a_ 83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNY-GRIIMTASASGIYGN----- 156 (302)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEECCHHHHHCC-----
T ss_pred HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCC-cEEEEeCChhhcCCC-----
Confidence 32 68999999998543 3345667789999999999988875 34454 399999997754222
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCc
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDRE 334 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 334 (476)
.....|+.+|.+.+.+.+.++.++ ||++++|.||.+-.+.... .. ..
T Consensus 157 -------~~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~~t~~~~~-~~-~~--------------------- 206 (302)
T d1gz6a_ 157 -------FGQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAGSRMTETV-MP-ED--------------------- 206 (302)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECCSTTTGGG-SC-HH---------------------
T ss_pred -------CCcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCCCcchhhc-Cc-Hh---------------------
Confidence 345789999999999999988764 8999999999874332110 00 01
Q ss_pred eeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCC
Q 011841 335 VARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 335 ~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
...++.++|+|.+++.++......+| +++.+.+|
T Consensus 207 -~~~~~~PedvA~~v~fL~S~~a~itG-----------~~i~vdGG 240 (302)
T d1gz6a_ 207 -LVEALKPEYVAPLVLWLCHESCEENG-----------GLFEVGAG 240 (302)
T ss_dssp -HHHHSCGGGTHHHHHHHTSTTCCCCS-----------CEEEEETT
T ss_pred -hHhcCCHHHHHHHHHHHcCCCcCCCC-----------cEEEeCCC
Confidence 11233468999999988753333333 66666554
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.81 E-value=4e-19 Score=168.96 Aligned_cols=221 Identities=14% Similarity=0.077 Sum_probs=153.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHH---CCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc-
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKK---RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV- 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~---~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~- 191 (476)
.++|+++||||+++||.+++++|++ +|++|++++|+.+..++..++.... ....++..+.+|++|+++++++++.
T Consensus 4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~-~~~~~~~~~~~Dvs~~~~v~~l~~~~ 82 (259)
T d1oaaa_ 4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQ-QPDLKVVLAAADLGTEAGVQRLLSAV 82 (259)
T ss_dssp CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHH-CTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhh-cCCceEEEEEccCCCHHHHHHHHHHH
Confidence 5789999999999999999999986 7999999999654333322222221 1234788999999999998887642
Q ss_pred --------CCccEEEEccccCCh-------hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-----CCeEEEecCccccCC
Q 011841 192 --------VPFTHVLHLAAQAGV-------RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-----QPSIVWASSSSVYGL 251 (476)
Q Consensus 192 --------~~~d~Vi~~Ag~~~~-------~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-----~~~~V~~SS~~vyg~ 251 (476)
..+|++|||||.... ....++.+..+++|+.++..+.+++...-. ..+||++||.+.+.+
T Consensus 83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~~ 162 (259)
T d1oaaa_ 83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQP 162 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSC
T ss_pred HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccCC
Confidence 256899999987432 112344567899999999999998754321 238999999876432
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH-hCCcEEEEeeCcccCCCCCC---CCcHHHHHHHHHcCCceEEE
Q 011841 252 NTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI-YGLALTGLRFFTVYGPWGRP---DMAYFFFTKDILQGKTIDVY 327 (476)
Q Consensus 252 ~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~-~gi~~~ilRp~~v~G~~~~~---~~~~~~~~~~~~~g~~~~~~ 327 (476)
. +....|+.+|.+.+.+.+.++.+ .|++++.|.||.|-.+.... ....+.+...+....+.
T Consensus 163 ~------------~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~--- 227 (259)
T d1oaaa_ 163 Y------------KGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSD--- 227 (259)
T ss_dssp C------------TTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSSHHHHHHHHHCSCHHHHHHHHHHHHT---
T ss_pred C------------ccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHHHHHhcCCC---
Confidence 2 45678999999999999998866 48999999999998762110 00001111111111111
Q ss_pred eeCCCCceeEeceeHHHHHHHHHHHHhhcCcCCC
Q 011841 328 KTQDDREVARDFTYIDDVVKGCVGALDTAGKSTG 361 (476)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~~~g 361 (476)
..+..++|+|++++.++......+|
T Consensus 228 ---------~r~~~p~evA~~i~~ll~~~s~~TG 252 (259)
T d1oaaa_ 228 ---------GALVDCGTSAQKLLGLLQKDTFQSG 252 (259)
T ss_dssp ---------TCSBCHHHHHHHHHHHHHHCCSCTT
T ss_pred ---------CCCCCHHHHHHHHHHHhhhccCCCC
Confidence 1245689999999999977554444
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.81 E-value=1.4e-19 Score=173.67 Aligned_cols=223 Identities=15% Similarity=0.150 Sum_probs=158.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
.++|+||||||++.||+++++.|+++|++|++++|+.+ .+++...+. ..++..+.+|++|.++++++++.+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~----~l~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAE----RLAELETDH--GDNVLGIVGDVRSLEDQKQAASRCVAR 76 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH----HHHHHHHHc--CCCeeEEecccccHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999543 222222222 347899999999999988887643
Q ss_pred --CccEEEEccccCChh---------hhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCC
Q 011841 193 --PFTHVLHLAAQAGVR---------YAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPF 257 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~~---------~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~ 257 (476)
++|++|||||..... ...++.+..+++|+.++..+++++. +.+ .++|++||...+-+.
T Consensus 77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--g~iI~i~S~~~~~~~----- 149 (276)
T d1bdba_ 77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR--GNVIFTISNAGFYPN----- 149 (276)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTSTT-----
T ss_pred hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC--CCceeeeechhccCC-----
Confidence 689999999964321 1112366889999999988887753 333 378988887643221
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh--CCcEEEEeeCcccCCCCCCC--------CcHHHHHHHHHcCCceEEE
Q 011841 258 SESHRTDQPASLYAATKKAGEEIAHTYNHIY--GLALTGLRFFTVYGPWGRPD--------MAYFFFTKDILQGKTIDVY 327 (476)
Q Consensus 258 ~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--gi~~~ilRp~~v~G~~~~~~--------~~~~~~~~~~~~g~~~~~~ 327 (476)
.....|+.+|.+.+.+.+.++.++ +++++.|.||.|-.+...+. .....+.+.+.+.-|+.
T Consensus 150 -------~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~Plg-- 220 (276)
T d1bdba_ 150 -------GGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLKSVLPIG-- 220 (276)
T ss_dssp -------SSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCCGGGC---------CHHHHHTTTCTTS--
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHHhcCCCC--
Confidence 345679999999999999988775 49999999999976532211 01112333333333332
Q ss_pred eeCCCCceeEeceeHHHHHHHHHHHHhh--cCcCCCCCCCCCCCCCceEEEEcCCC
Q 011841 328 KTQDDREVARDFTYIDDVVKGCVGALDT--AGKSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~a~~~~l~~--~~~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
.+..++|+|.+++.++.. ...-+| +++++.+|-
T Consensus 221 ----------R~g~peeva~~v~fL~S~~~a~~itG-----------~~i~VDGG~ 255 (276)
T d1bdba_ 221 ----------RMPEVEEYTGAYVFFATRGDAAPATG-----------ALLNYDGGL 255 (276)
T ss_dssp ----------SCCCGGGGSHHHHHHHCHHHHTTCSS-----------CEEEESSSG
T ss_pred ----------CCcCHHHHHHHHHHHcCCcccCCeeC-----------cEEEECcCh
Confidence 245679999999888743 344454 899998863
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.81 E-value=1.6e-18 Score=165.96 Aligned_cols=229 Identities=13% Similarity=0.067 Sum_probs=161.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.++|+||||||++.||+++++.|+++|++|++++|+.... .+...... .....+.++.+|++|++++.++++..
T Consensus 16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~---~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 92 (272)
T d1g0oa_ 16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTES---AEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVK 92 (272)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHH---HHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999864321 11222211 12347899999999999988887644
Q ss_pred ---CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSESHRTD 264 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~ 264 (476)
++|++|||+|.... ....++.+..+++|+.++..+++++...- ...++++++|...... ..
T Consensus 93 ~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~-----------~~ 161 (272)
T d1g0oa_ 93 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAK-----------AV 161 (272)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCS-----------SC
T ss_pred HhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccccc-----------cc
Confidence 68999999997543 33445566789999999999999876432 2347888887653211 11
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCC----------CCCCcHHHHH-HHHHcCCceEEEeeC
Q 011841 265 QPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWG----------RPDMAYFFFT-KDILQGKTIDVYKTQ 330 (476)
Q Consensus 265 ~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~----------~~~~~~~~~~-~~~~~g~~~~~~~~~ 330 (476)
.....|+.+|.+.+.+++.++.++ ||++++|+||.|-.+.. .......... ....+..|+
T Consensus 162 ~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl------ 235 (272)
T d1g0oa_ 162 PKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAVQWSPL------ 235 (272)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHHHSCTT------
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHHccCCC------
Confidence 345679999999999999888764 89999999999965410 0011111111 122223222
Q ss_pred CCCceeEeceeHHHHHHHHHHHHhhcCc-CCCCCCCCCCCCCceEEEEcCCC
Q 011841 331 DDREVARDFTYIDDVVKGCVGALDTAGK-STGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 331 ~~~~~~~~~v~v~Dva~a~~~~l~~~~~-~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
..+..++|+|.+++.++..... -+| +++.+.+|.
T Consensus 236 ------gR~~~peevA~~v~fL~s~~s~~itG-----------~~i~vDGG~ 270 (272)
T d1g0oa_ 236 ------RRVGLPIDIARVVCFLASNDGGWVTG-----------KVIGIDGGA 270 (272)
T ss_dssp ------CSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTC
T ss_pred ------CCCcCHHHHHHHHHHHhCchhcCccC-----------ceEeECCCC
Confidence 2367789999999998865432 343 888888875
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.1e-18 Score=164.52 Aligned_cols=224 Identities=16% Similarity=0.130 Sum_probs=165.0
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-C
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-P 193 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~ 193 (476)
+.++|++|||||++.||+++++.|+++|++|++++|+.+ ..++..+..+++...+|+.+.+.++..++.. +
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~--------~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 74 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINES--------KLQELEKYPGIQTRVLDVTKKKQIDQFANEVER 74 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH--------HHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH--------HHHHHHhccCCceeeeecccccccccccccccc
Confidence 368899999999999999999999999999999999432 1223344568999999999988888776654 6
Q ss_pred ccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHH----hcCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 194 FTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCK----SVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
+|++|||||.... +.+.++.+..+++|+.++..+++++. +.+. .++|++||...- . ....
T Consensus 75 id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~-g~Ii~isS~~~~--~---------~~~~ 142 (245)
T d2ag5a1 75 LDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKS-GNIINMSSVASS--V---------KGVV 142 (245)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCSBTT--T---------BCCT
T ss_pred ceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCC-ceeeeeechhhc--c---------CCcc
Confidence 7999999998543 33455677899999999999888753 3333 389999986531 0 0114
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC----CCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR----PDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
....|+.+|.+.+.+++.++.++ ||++++|.||.|-.|... .......+.+.+.+..|+. .
T Consensus 143 ~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~------------R 210 (245)
T d2ag5a1 143 NRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTG------------R 210 (245)
T ss_dssp TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTS------------S
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCC------------C
Confidence 55789999999999999998775 799999999999876321 0011123444444444431 2
Q ss_pred ceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 339 FTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
+..++|+|+++..++.... .-+| +++.+.+|.
T Consensus 211 ~~~pedva~~v~fL~s~~s~~iTG-----------~~i~VDGG~ 243 (245)
T d2ag5a1 211 FATAEEIAMLCVYLASDESAYVTG-----------NPVIIDGGW 243 (245)
T ss_dssp CEEHHHHHHHHHHHHSGGGTTCCS-----------CEEEECTTG
T ss_pred CcCHHHHHHHHHHHhChhhCCCcC-----------ceEEeCCCc
Confidence 5678999999999886543 3344 889888874
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.80 E-value=1e-18 Score=163.64 Aligned_cols=215 Identities=15% Similarity=0.048 Sum_probs=153.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-Cc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-PF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-~~ 194 (476)
.++|+||||||++.||++++++|+++|++|++++|+.+ .++..+.+++.+|+++. ++.+++.. ++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~------------~l~~~~~~~~~~Dv~~~--~~~~~~~~g~i 67 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE------------LLKRSGHRYVVCDLRKD--LDLLFEKVKEV 67 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH------------HHHHTCSEEEECCTTTC--HHHHHHHSCCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH------------HHHhcCCcEEEcchHHH--HHHHHHHhCCC
Confidence 36899999999999999999999999999999998421 11223567788999863 33344332 46
Q ss_pred cEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQP 266 (476)
Q Consensus 195 d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p 266 (476)
|++|||||.... +.+.++.+..+++|+.++..+++++ ++.+.. ++|++||....... ..
T Consensus 68 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G-~ii~i~S~~~~~~~------------~~ 134 (234)
T d1o5ia_ 68 DILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWG-RIVAITSFSVISPI------------EN 134 (234)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTSCC------------TT
T ss_pred cEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccc-cccccccccccccc------------cc
Confidence 999999997432 3345667788999999988888765 344443 89999998764322 45
Q ss_pred CChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHH
Q 011841 267 ASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYID 343 (476)
Q Consensus 267 ~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~ 343 (476)
...|+.+|.+.+.+.+.++.++ ||++++|.||.+-.+...... -....+.+.+.-|+ ..+..++
T Consensus 135 ~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~~-~~~~~~~~~~~~pl------------~R~~~pe 201 (234)
T d1o5ia_ 135 LYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELL-SEEKKKQVESQIPM------------RRMAKPE 201 (234)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHHS-CHHHHHHHHTTSTT------------SSCBCHH
T ss_pred cccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhhc-CHHHHHHHHhcCCC------------CCCcCHH
Confidence 5689999999999999888764 799999999999776321100 01233344444333 2356789
Q ss_pred HHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 344 DVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 344 Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
|+|++++.++.... .-+| +++.+.+|-
T Consensus 202 diA~~v~fL~S~~s~~itG-----------~~i~vDGG~ 229 (234)
T d1o5ia_ 202 EIASVVAFLCSEKASYLTG-----------QTIVVDGGL 229 (234)
T ss_dssp HHHHHHHHHHSGGGTTCCS-----------CEEEESTTC
T ss_pred HHHHHHHHHhChhhcCCcC-----------cEEEECccc
Confidence 99999988875433 3344 899998764
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=4.8e-19 Score=170.71 Aligned_cols=218 Identities=15% Similarity=0.110 Sum_probs=149.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc--hHHHHHHh-hhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP--SLKRARQK-LLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~--~~~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
.|.||||||+++||+++++.|+++|++|+.+.+.....+. .+.+.... .....++..+.+|++|.+++.++++.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 4678999999999999999999999886665543322221 12222222 223458999999999999999887654
Q ss_pred -CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 193 -PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 193 -~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
.+|++|||||.... ..+.++.+..+++|+.|+.++++++ ++.+. ++||++||.+..-+.
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~-G~Iv~isS~~g~~~~----------- 149 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGS-GRVLVTGSVGGLMGL----------- 149 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEEGGGTSCC-----------
T ss_pred cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCC-CceEEEechhhcCCC-----------
Confidence 68999999987443 3345566788999999988888875 44554 399999998754221
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC--C-----------cHHHHHHHHHcCCceEEE
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD--M-----------AYFFFTKDILQGKTIDVY 327 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~--~-----------~~~~~~~~~~~g~~~~~~ 327 (476)
+....|+.+|.+.+.+.+.++.++ |+++++|+||.|-.+..... . ....+.+.+...+.+.
T Consensus 150 -~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 226 (285)
T d1jtva_ 150 -PFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAFMEKVLGSPEEVLDRTDIHTFHRFYQYLAHSKQVF-- 226 (285)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-------CCHHHHHHTSCHHHHHHHHHHHHHHHHHH--
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCChHHHHhccCHHHHhhccchhHHHHHHHHHHHHhhhh--
Confidence 445789999999999999988774 89999999999976532110 0 0111111111111110
Q ss_pred eeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 328 KTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
......++|||++++.++..+..
T Consensus 227 --------~~~~~~PeeVA~~v~~~~~~~~p 249 (285)
T d1jtva_ 227 --------REAAQNPEEVAEVFLTALRAPKP 249 (285)
T ss_dssp --------HHHCBCHHHHHHHHHHHHHCSSC
T ss_pred --------cccCCCHHHHHHHHHHHHhCCCC
Confidence 11245689999999999987654
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.80 E-value=1.7e-18 Score=164.50 Aligned_cols=209 Identities=20% Similarity=0.130 Sum_probs=149.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC----
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV---- 192 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~---- 192 (476)
+.+||||||+|+||.++++.|+++|+ .|+++.|+....+........-......+.++.+|++|.++++++++.+
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~ 88 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDV 88 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccccc
Confidence 35999999999999999999999999 4888888644333322222211122357899999999999999888754
Q ss_pred CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCC
Q 011841 193 PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPAS 268 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~ 268 (476)
++|.||||+|.... +...++....+++|+.++.++.+++...+.. +||++||++..-+. ....
T Consensus 89 ~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~-~iv~~SS~a~~~g~------------~~~~ 155 (259)
T d2fr1a1 89 PLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLT-AFVLFSSFASAFGA------------PGLG 155 (259)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTCC------------TTCT
T ss_pred cccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCc-eEeeecchhhccCC------------cccH
Confidence 58999999998543 2223445567899999999999988877665 99999998754322 3456
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHH
Q 011841 269 LYAATKKAGEEIAHTYNHIYGLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKG 348 (476)
Q Consensus 269 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a 348 (476)
.|+.+|...+.+.+++..+ |++++.|.||.+.+++-.... ..+ .++ ..-...+.+++++++
T Consensus 156 ~YaAaka~l~~la~~~~~~-Gi~v~~I~pg~~~~~g~~~~~----~~~-~~~-------------~~G~~~~~~~~~~~~ 216 (259)
T d2fr1a1 156 GYAPGNAYLDGLAQQRRSD-GLPATAVAWGTWAGSGMAEGP----VAD-RFR-------------RHGVIEMPPETACRA 216 (259)
T ss_dssp TTHHHHHHHHHHHHHHHHT-TCCCEEEEECCBC-----------------CT-------------TTTEECBCHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHhC-CCCEEECCCCcccCCccccch----HHH-HHH-------------hcCCCCCCHHHHHHH
Confidence 7999999999999887764 999999999998876422110 111 111 111235778999999
Q ss_pred HHHHHhhcCc
Q 011841 349 CVGALDTAGK 358 (476)
Q Consensus 349 ~~~~l~~~~~ 358 (476)
+..++.....
T Consensus 217 l~~~l~~~~~ 226 (259)
T d2fr1a1 217 LQNALDRAEV 226 (259)
T ss_dssp HHHHHHTTCS
T ss_pred HHHHHhCCCc
Confidence 9999987654
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.79 E-value=1e-18 Score=169.21 Aligned_cols=232 Identities=9% Similarity=0.042 Sum_probs=161.0
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
..++|++|||||+|+||++++++|+++|++|++++|+.+..++..++.... ....+..+.+|++|.+.++++++..
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~--~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQ--TGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--HSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHh--cCCceEEEEecccChHHHHHHhhhhhh
Confidence 478899999999999999999999999999999999655433333332222 2357889999999999988777543
Q ss_pred ---CccEEEEccccCChh----hhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCC
Q 011841 193 ---PFTHVLHLAAQAGVR----YAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESH 261 (476)
Q Consensus 193 ---~~d~Vi~~Ag~~~~~----~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~ 261 (476)
++|++|||||..... ...++....+.+|..+...+...+ ........++.+||.+.....
T Consensus 100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~--------- 170 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS--------- 170 (294)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC---------
T ss_pred hccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcc---------
Confidence 689999999974432 222344567778888877766543 223333367777776543221
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCC-CcHHHHHHHHHcCCceEEEeeCCCCceeE
Q 011841 262 RTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPD-MAYFFFTKDILQGKTIDVYKTQDDREVAR 337 (476)
Q Consensus 262 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 337 (476)
.....|+.+|.+.+.+++.++.++ ||++++|.||.|..+..... .......+.+.+.-|+.
T Consensus 171 ---~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~------------ 235 (294)
T d1w6ua_ 171 ---GFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCG------------ 235 (294)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTS------------
T ss_pred ---cccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCCC------------
Confidence 345679999999999999988764 79999999999987743211 01123444555544442
Q ss_pred eceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 338 DFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 338 ~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
.+..++|+|.+++.++.... .-+| +++.+.+|..+
T Consensus 236 R~~~pediA~~v~fL~sd~s~~itG-----------~~i~vDGG~~l 271 (294)
T d1w6ua_ 236 RLGTVEELANLAAFLCSDYASWING-----------AVIKFDGGEEV 271 (294)
T ss_dssp SCBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTHHH
T ss_pred CCCCHHHHHHHHHHHhCchhcCCCC-----------cEEEECCChhh
Confidence 25568999999999886543 2344 89999888543
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.79 E-value=7e-19 Score=166.59 Aligned_cols=218 Identities=14% Similarity=0.082 Sum_probs=155.8
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-----Cc
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-----PF 194 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~~ 194 (476)
++|||||+++||+.++++|+++|++|++.+|+.+..++. +... ..+..+|++|.++++++++.+ ++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~-~~~~--------~~~~~~dv~~~~~~~~~~~~~~~~~G~i 72 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDEL-EAFA--------ETYPQLKPMSEQEPAELIEAVTSAYGQV 72 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH-HHHH--------HHCTTSEECCCCSHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-Hhhh--------CcEEEeccCCHHHHHHHHHHHHHHcCCC
Confidence 689999999999999999999999999999866543221 1111 112357888888777776543 68
Q ss_pred cEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 195 THVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 195 d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
|++|||||.... +.+.++.+..+++|+.++..+++++ ++.+. .+||++||.+.+... .
T Consensus 73 DiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~-G~IV~isS~~~~~~~------------~ 139 (252)
T d1zmta1 73 DVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKS-GHIIFITSATPFGPW------------K 139 (252)
T ss_dssp CEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEECCSTTTSCC------------T
T ss_pred CEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhccccc-ceeeccccccccccc------------c
Confidence 999999986321 2344567788999999988888775 34443 399999998765332 3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCc------HHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMA------YFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~------~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
....|+.+|.+.+.+.+.++.++ ||++++|.||.|-.+....... .+.....+.+..|+.
T Consensus 140 ~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~----------- 208 (252)
T d1zmta1 140 ELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQ----------- 208 (252)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSS-----------
T ss_pred cccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCC-----------
Confidence 45689999999999999988765 7999999999998764322111 123334444433331
Q ss_pred EeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 337 RDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.+..++|+|++++.++.... .-+| +++.+.+|-.
T Consensus 209 -R~g~pedvA~~v~fL~S~~s~~iTG-----------~~i~vdGG~~ 243 (252)
T d1zmta1 209 -RLGTQKELGELVAFLASGSCDYLTG-----------QVFWLAGGFP 243 (252)
T ss_dssp -SCBCHHHHHHHHHHHHTTSCGGGTT-----------CEEEESTTCC
T ss_pred -CCcCHHHHHHHHHHHhCchhcCCcC-----------CeEEECCCce
Confidence 25678999999998886543 3344 8999988753
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=7.1e-18 Score=159.08 Aligned_cols=210 Identities=13% Similarity=0.089 Sum_probs=148.1
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc---
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV--- 191 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--- 191 (476)
+.++|++|||||+++||..++++|+++|++|++++|+.+..++..++ . .........|+.+.+.+++.+..
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~----l--~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK----L--GNNCVFAPADVTSEKDVQTALALAKG 75 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH----H--CTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH----h--CCCccccccccccccccccccccccc
Confidence 46899999999999999999999999999999999977644332222 1 34778889999998777665543
Q ss_pred --CCccEEEEccccCCh----------hhhhcChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCccccC
Q 011841 192 --VPFTHVLHLAAQAGV----------RYAMQNPQSYVASNIAGFVNLLEVCKSV---------NPQPSIVWASSSSVYG 250 (476)
Q Consensus 192 --~~~d~Vi~~Ag~~~~----------~~~~~~~~~~~~~nv~gt~~ll~~a~~~---------~~~~~~V~~SS~~vyg 250 (476)
...|.++++++.... ....+..+..+++|+.++.++.+++... ....+||++||.+.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~ 155 (248)
T d2o23a1 76 KFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE 155 (248)
T ss_dssp HHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred ccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc
Confidence 256999988865221 1123455678999999999999887432 1123799999988653
Q ss_pred CCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEE
Q 011841 251 LNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVY 327 (476)
Q Consensus 251 ~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~ 327 (476)
+. +....|+.+|.+.+.+.+.++.++ |+++++|.||.+..+.... ....+...+.+..|+ .
T Consensus 156 ~~------------~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i~T~~~~~--~~~~~~~~~~~~~pl--~ 219 (248)
T d2o23a1 156 GQ------------VGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTS--LPEKVCNFLASQVPF--P 219 (248)
T ss_dssp CC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCC------------CHHHHTCSS--S
T ss_pred CC------------CCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCceecchhhc--CCHHHHHHHHhcCCC--C
Confidence 22 456789999999999999998775 7999999999998764321 111222223322221 0
Q ss_pred eeCCCCceeEeceeHHHHHHHHHHHHhh
Q 011841 328 KTQDDREVARDFTYIDDVVKGCVGALDT 355 (476)
Q Consensus 328 ~~~~~~~~~~~~v~v~Dva~a~~~~l~~ 355 (476)
..+..++|+|++++.+++.
T Consensus 220 ---------~R~g~peevA~~v~fL~s~ 238 (248)
T d2o23a1 220 ---------SRLGDPAEYAHLVQAIIEN 238 (248)
T ss_dssp ---------CSCBCHHHHHHHHHHHHHC
T ss_pred ---------CCCcCHHHHHHHHHHHHhC
Confidence 1256789999999988763
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=3.5e-18 Score=163.81 Aligned_cols=209 Identities=15% Similarity=0.053 Sum_probs=144.3
Q ss_pred CCEE-EEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC---
Q 011841 118 GMTV-LVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV--- 192 (476)
Q Consensus 118 ~~~V-LVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~--- 192 (476)
+|+| |||||+++||.+++++|+++ |+.|++.+|+.+..++..+.... ...+++++.+|++|.++++++++.+
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~---~~~~~~~~~~Dvs~~~sv~~~~~~~~~~ 78 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQA---EGLSPRFHQLDIDDLQSIRALRDFLRKE 78 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHH---TTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh---cCCcEEEEEEecCCHHHHHHHHHHHHHh
Confidence 4555 89999999999999999986 89999999966543333333222 2457899999999999998887654
Q ss_pred --CccEEEEccccCChhh----hhcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCC-CCCC--------
Q 011841 193 --PFTHVLHLAAQAGVRY----AMQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLN-TQVP-------- 256 (476)
Q Consensus 193 --~~d~Vi~~Ag~~~~~~----~~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~-~~~~-------- 256 (476)
++|++|||||...... ..++.+..+++|+.|+..+++.+...- ...++|++||....... ...+
T Consensus 79 ~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~~~~~~~y~~~k~~~ 158 (275)
T d1wmaa1 79 YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRS 158 (275)
T ss_dssp HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHC
T ss_pred cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceeccccccchhhhhhhcc
Confidence 7899999999854322 233455789999999999999875421 12389999996542110 0000
Q ss_pred --C------------------CCCCCCCCCCChHHHHHHHHHHHHHHHHHHh-------CCcEEEEeeCcccCCCCCCCC
Q 011841 257 --F------------------SESHRTDQPASLYAATKKAGEEIAHTYNHIY-------GLALTGLRFFTVYGPWGRPDM 309 (476)
Q Consensus 257 --~------------------~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-------gi~~~ilRp~~v~G~~~~~~~ 309 (476)
. ........+...|+.+|.+...+.+.+++++ |++++.|.||+|-.+-..+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~~~- 237 (275)
T d1wmaa1 159 ETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGPK- 237 (275)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTCTT-
T ss_pred cccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCcccCc-
Confidence 0 0000112456789999999988877665443 89999999999976532210
Q ss_pred cHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 310 AYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 310 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
....++|.|+.++.+...+..
T Consensus 238 ----------------------------~~~~pee~A~~~~~~a~~~~~ 258 (275)
T d1wmaa1 238 ----------------------------ATKSPEEGAETPVYLALLPPD 258 (275)
T ss_dssp ----------------------------CSBCHHHHTHHHHHHHSCCTT
T ss_pred ----------------------------ccCCHHHHHHHHHHHHcCChh
Confidence 012478999988877654433
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.76 E-value=2.6e-17 Score=155.16 Aligned_cols=174 Identities=16% Similarity=0.036 Sum_probs=129.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHH---CCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc---
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKK---RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV--- 191 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~---~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~--- 191 (476)
+|+||||||+++||+++++.|++ +|++|++.+|+.+..++. .. ......++.++.+|++|+++++++++.
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~-~~---~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 77 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-ED---LAKNHSNIHILEIDLRNFDAYDKLVADIEG 77 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HH---HHHHCTTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-HH---HHhcCCcEEEEEEEeccHHHHHHHHhhhHH
Confidence 47899999999999999999974 699999999988765432 22 122345899999999999998877653
Q ss_pred ----CCccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hc----------CCCCeEEEecCccc
Q 011841 192 ----VPFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SV----------NPQPSIVWASSSSV 248 (476)
Q Consensus 192 ----~~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~----------~~~~~~V~~SS~~v 248 (476)
-++|++|||||.... +...++.+..+++|+.|+..+++++. +. ....++|++||...
T Consensus 78 ~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g 157 (248)
T d1snya_ 78 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG 157 (248)
T ss_dssp HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGG
T ss_pred HhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccccccc
Confidence 268999999997432 22233456789999999988887653 21 11248999999663
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCC
Q 011841 249 YGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPW 304 (476)
Q Consensus 249 yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~ 304 (476)
.-.. .+......|+.+|.+...+.+.++.++ |++++.|.||.|-.+.
T Consensus 158 ~~~~---------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG~v~T~m 207 (248)
T d1snya_ 158 SIQG---------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPGWVKTDM 207 (248)
T ss_dssp CSTT---------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCSBCSTT
T ss_pred ccCC---------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCCcccCCc
Confidence 2110 011345689999999999998887654 7999999999997763
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.75 E-value=2.2e-17 Score=155.97 Aligned_cols=202 Identities=12% Similarity=0.047 Sum_probs=138.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC--
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV-- 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-- 192 (476)
++|+||||||+++||.+++++|+++|+ .|++.+|+.+..++ .. .....++.++.+|++|.++++++++.+
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~----l~--~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 75 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE----LK--SIKDSRVHVLPLTVTCDKSLDTFVSKVGE 75 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH----HH--TCCCTTEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHH----HH--HhhCCceEEEEEecCCHHHHHHHHHHHHH
Confidence 458999999999999999999999996 68888886654322 11 123458999999999999988776532
Q ss_pred -----CccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHH----hcC----------CCCeEEEecCccc
Q 011841 193 -----PFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCK----SVN----------PQPSIVWASSSSV 248 (476)
Q Consensus 193 -----~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~----~~~----------~~~~~V~~SS~~v 248 (476)
++|++|||||.... ....++.+..+++|+.|+..+++.+. +.+ ...+++.+|+...
T Consensus 76 ~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~ 155 (250)
T d1yo6a1 76 IVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG 155 (250)
T ss_dssp HHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGG
T ss_pred HhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccc
Confidence 48999999997432 22234466799999999998888753 111 1136888887654
Q ss_pred cCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceE
Q 011841 249 YGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTID 325 (476)
Q Consensus 249 yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~ 325 (476)
+-.... . .....+...|+.||.+...+++.++.++ |++++.|.||.|-.+-...
T Consensus 156 ~~~~~~---~--~~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~v~T~m~~~------------------ 212 (250)
T d1yo6a1 156 SITDNT---S--GSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGWVQTNLGGK------------------ 212 (250)
T ss_dssp CSTTCC---S--TTSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCCC-------------------------
T ss_pred cccCCc---c--cccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCCCCCCC------------------
Confidence 322111 0 0111344579999999999999988764 8999999999986541110
Q ss_pred EEeeCCCCceeEeceeHHHHHHHHHHHHhhcCc
Q 011841 326 VYKTQDDREVARDFTYIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 326 ~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~~ 358 (476)
. ..+.+++.++.++..+.....
T Consensus 213 --------~---~~~~~e~~a~~~~~~~~~~~~ 234 (250)
T d1yo6a1 213 --------N---AALTVEQSTAELISSFNKLDN 234 (250)
T ss_dssp -----------------HHHHHHHHHHHTTCCG
T ss_pred --------C---CCCCHHHHHHHHHHHHhcCCC
Confidence 0 123468899988888876543
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=7.2e-17 Score=152.83 Aligned_cols=228 Identities=13% Similarity=0.085 Sum_probs=159.3
Q ss_pred CCCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|+||||||+| +||+++++.|+++|++|++.+|+++ .................+..|+.+..++.+.++..
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK----LKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELG 78 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT----THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhh
Confidence 5789999999998 7999999999999999999999643 22222222333456778889999988877666432
Q ss_pred ----CccEEEEccccCChhhh---------hcChHHHHHHHHHHHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGVRYA---------MQNPQSYVASNIAGFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~~~~---------~~~~~~~~~~nv~gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
.+|++||+|+....... .+.......+|+.+...+...+...- ....+|++||.....+.
T Consensus 79 ~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~------ 152 (258)
T d1qsga_ 79 KVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAI------ 152 (258)
T ss_dssp TTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC------
T ss_pred hcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCC------
Confidence 67999999987543221 12233466777777777777765422 12368888887643211
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCce
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREV 335 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 335 (476)
+....|+.+|.+.+.+++.++.++ |+++++|+||.|..+..............+.+..|+.
T Consensus 153 ------~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~---------- 216 (258)
T d1qsga_ 153 ------PNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIR---------- 216 (258)
T ss_dssp ------TTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTS----------
T ss_pred ------CCcHHHHHHHHHHHHHHHHHHHHhCccCceeecccccccccccccccchhhhHHHHHHhCCCCC----------
Confidence 345789999999999999998876 6999999999998875433222333444444333331
Q ss_pred eEeceeHHHHHHHHHHHHhhc-CcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 336 ARDFTYIDDVVKGCVGALDTA-GKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 336 ~~~~v~v~Dva~a~~~~l~~~-~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
.+..++|+|.+++.++... ..-+| +++.+.+|..
T Consensus 217 --R~~~peeia~~v~fL~s~~s~~itG-----------~~i~vDGG~~ 251 (258)
T d1qsga_ 217 --RTVTIEDVGNSAAFLCSDLSAGISG-----------EVVHVDGGFS 251 (258)
T ss_dssp --SCCCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTGG
T ss_pred --CCcCHHHHHHHHHHHhCchhcCccC-----------ceEEECcCHH
Confidence 2567899999999988653 23343 8899988754
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.73 E-value=2.2e-17 Score=154.53 Aligned_cols=194 Identities=14% Similarity=0.087 Sum_probs=139.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-------h
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-------F 189 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-------~ 189 (476)
++|+||||||+|.||+++++.|+++|++|+++++..... ......+.+|..+.++.+.+ +
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE-------------ASASVIVKMTDSFTEQADQVTAEVGKLL 67 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT-------------SSEEEECCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc-------------ccccceeecccCcHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999865421 11334455666555544333 2
Q ss_pred ccCCccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEecCccccCCCCCCCCCCCCCC
Q 011841 190 DVVPFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWASSSSVYGLNTQVPFSESHRT 263 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~SS~~vyg~~~~~~~~E~~~~ 263 (476)
...++|++|||||.... ....++.+..+++|+.++..+.+++... ....+||++||.+.+...
T Consensus 68 ~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~----------- 136 (236)
T d1dhra_ 68 GDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGT----------- 136 (236)
T ss_dssp TTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC-----------
T ss_pred CCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCc-----------
Confidence 33368999999985321 2233456678999999999988876542 112489999998765322
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEe
Q 011841 264 DQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARD 338 (476)
Q Consensus 264 ~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 338 (476)
+....|+.+|.+.+.+.+.++.+. |++++.|.||.|..| +.+...... ..-.
T Consensus 137 -~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~----------~~~~~~~~~------------~~~~ 193 (236)
T d1dhra_ 137 -PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTP----------MNRKSMPEA------------DFSS 193 (236)
T ss_dssp -TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECH----------HHHHHSTTS------------CGGG
T ss_pred -cCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCC----------cchhhCccc------------hhhc
Confidence 345689999999999999998653 699999999999875 222222111 1124
Q ss_pred ceeHHHHHHHHHHHHhhcC
Q 011841 339 FTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 339 ~v~v~Dva~a~~~~l~~~~ 357 (476)
++.++|+|+.++.++....
T Consensus 194 ~~~pe~va~~~~~l~s~~~ 212 (236)
T d1dhra_ 194 WTPLEFLVETFHDWITGNK 212 (236)
T ss_dssp SEEHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHhCCCc
Confidence 6789999999998886544
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.7e-17 Score=157.02 Aligned_cols=206 Identities=15% Similarity=0.117 Sum_probs=147.6
Q ss_pred CCCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHHhhc
Q 011841 113 PRRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 113 ~~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
+.+.++|++|||||+++||++++++|+++|++|++++|+.+..+ +...+. .....+..+.+|+.+.+.+..+++
T Consensus 9 ~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~----~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 84 (269)
T d1xu9a_ 9 PEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQ----KVVSHCLELGAASAHYIAGTMEDMTFAEQFVA 84 (269)
T ss_dssp GGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----HHHHHHHHHTCSEEEEEECCTTCHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH----HHHHHHhhhhcccchhhhhhhhhHHHHHHHHH
Confidence 44478999999999999999999999999999999999654332 222222 223467888899999887776654
Q ss_pred cC-----CccEEEEccccCCh----hhhhcChHHHHHHHHHHHHHHHHHHHh---cCCCCeEEEecCccccCCCCCCCCC
Q 011841 191 VV-----PFTHVLHLAAQAGV----RYAMQNPQSYVASNIAGFVNLLEVCKS---VNPQPSIVWASSSSVYGLNTQVPFS 258 (476)
Q Consensus 191 ~~-----~~d~Vi~~Ag~~~~----~~~~~~~~~~~~~nv~gt~~ll~~a~~---~~~~~~~V~~SS~~vyg~~~~~~~~ 258 (476)
.+ .+|+++||||.... ....++.+..+++|+.++..+.+.+.. .+. .++|++||.+.+-+.
T Consensus 85 ~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~-G~ii~isS~~~~~~~------ 157 (269)
T d1xu9a_ 85 QAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-GSIVVVSSLAGKVAY------ 157 (269)
T ss_dssp HHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEGGGTSCC------
T ss_pred HHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC-CcceEeccchhcCCC------
Confidence 32 57999999987443 223445567899999998888776532 122 389999998754221
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 259 ESHRTDQPASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 259 E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
+....|+.+|.+.+.+.+.++.++ +++++.|.||.|-.+ +......+.
T Consensus 158 ------p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~----------~~~~~~~~~----------- 210 (269)
T d1xu9a_ 158 ------PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTE----------TAMKAVSGI----------- 210 (269)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCH----------HHHHHSCGG-----------
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCc----------HHHHhccCC-----------
Confidence 456789999999999999888663 589999999998654 222222221
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcC
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAG 357 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~ 357 (476)
........+++|+.++..+....
T Consensus 211 -~~~~~~~~e~~a~~i~~~~~~~~ 233 (269)
T d1xu9a_ 211 -VHMQAAPKEECALEIIKGGALRQ 233 (269)
T ss_dssp -GGGGCBCHHHHHHHHHHHHHTTC
T ss_pred -ccccCCCHHHHHHHHHHHhhcCC
Confidence 11234567999998888775533
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.72 E-value=3.3e-17 Score=153.26 Aligned_cols=193 Identities=13% Similarity=0.094 Sum_probs=135.9
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHH-------Hhhcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLT-------KLFDV 191 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~-------~~~~~ 191 (476)
.+||||||++.||++++++|+++|++|++++|...... .....+.+|..+.+... ..++.
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-------------DSNILVDGNKNWTEQEQSILEQTASSLQG 69 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-------------SEEEECCTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc-------------cccceeccccCchhHHHHHHHHHHHHhcC
Confidence 47899999999999999999999999999999664321 13344556665554433 22233
Q ss_pred CCccEEEEccccCCh-----hhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEecCccccCCCCCCCCCCCCCCCC
Q 011841 192 VPFTHVLHLAAQAGV-----RYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWASSSSVYGLNTQVPFSESHRTDQ 265 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~-----~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~SS~~vyg~~~~~~~~E~~~~~~ 265 (476)
-++|+||||||.... ....+..+..+++|+.++..+.+++...-. ..++|++||...+.+. +
T Consensus 70 g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~------------~ 137 (235)
T d1ooea_ 70 SQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPT------------P 137 (235)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCC------------T
T ss_pred CCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCc------------c
Confidence 468999999996322 112234556799999999888887654211 1389999998755322 4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHh-----CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCceeEece
Q 011841 266 PASLYAATKKAGEEIAHTYNHIY-----GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVARDFT 340 (476)
Q Consensus 266 p~~~Y~~sK~~~E~~~~~~~~~~-----gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v 340 (476)
....|+.+|.+.+.+.+.++.++ +++++.|+||.+-.+ +.+....+. ....++
T Consensus 138 ~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~----------~~~~~~~~~------------~~~~~~ 195 (235)
T d1ooea_ 138 SMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP----------MNRKWMPNA------------DHSSWT 195 (235)
T ss_dssp TBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH----------HHHHHSTTC------------CGGGCB
T ss_pred cccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc----------chhhhCcCC------------ccccCC
Confidence 45789999999999999988664 678999999998654 233333221 122467
Q ss_pred eHHHHHHHHHHHHhhcCc
Q 011841 341 YIDDVVKGCVGALDTAGK 358 (476)
Q Consensus 341 ~v~Dva~a~~~~l~~~~~ 358 (476)
..+|+++.++..+..+..
T Consensus 196 ~~~~va~~~~~~l~~~~~ 213 (235)
T d1ooea_ 196 PLSFISEHLLKWTTETSS 213 (235)
T ss_dssp CHHHHHHHHHHHHHCGGG
T ss_pred CHHHHHHHHHHHhcCccc
Confidence 899999999877765543
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.69 E-value=7e-16 Score=147.21 Aligned_cols=228 Identities=12% Similarity=0.061 Sum_probs=149.1
Q ss_pred CCCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC-
Q 011841 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV- 192 (476)
Q Consensus 116 ~~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~- 192 (476)
.++|++|||||+| .||.+++++|+++|++|++++|+.+ .++..++..+ ......+..+|+++.+++.++++..
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~---~~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQ---ELNSPYVYELDVSKEEHFKSLYNSVK 78 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHH---HTTCCCEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHh---hCCceeEeeecccchhhHHHHHHHHH
Confidence 5789999999887 7999999999999999999999743 2222222222 2446778899999999888777533
Q ss_pred ----CccEEEEccccCChhhh-----hcChHHHHHHHHH---HHHHHHHHHHhcC-CCCeEEEecCccccCCCCCCCCCC
Q 011841 193 ----PFTHVLHLAAQAGVRYA-----MQNPQSYVASNIA---GFVNLLEVCKSVN-PQPSIVWASSSSVYGLNTQVPFSE 259 (476)
Q Consensus 193 ----~~d~Vi~~Ag~~~~~~~-----~~~~~~~~~~nv~---gt~~ll~~a~~~~-~~~~~V~~SS~~vyg~~~~~~~~E 259 (476)
++|++|||+|....... ..........+.. ....+.....+.. ....++.+|+.+.....
T Consensus 79 ~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~------- 151 (274)
T d2pd4a1 79 KDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYM------- 151 (274)
T ss_dssp HHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBC-------
T ss_pred HHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccccc-------
Confidence 68999999997543221 1222222222222 2333333333222 22246666666654322
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCCcee
Q 011841 260 SHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDREVA 336 (476)
Q Consensus 260 ~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 336 (476)
.....|+.+|.+.+.+++.++.++ |+++++|.||.+..+..........+........++
T Consensus 152 -----~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~------------ 214 (274)
T d2pd4a1 152 -----AHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPL------------ 214 (274)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTT------------
T ss_pred -----ccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhhhhc------------
Confidence 345689999999999999888764 799999999999887543222222333333332222
Q ss_pred EeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 337 RDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 337 ~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+..++|+|.+++.++.... .-+| +++.+.+|..
T Consensus 215 ~r~~~pedIA~~v~fL~S~~s~~itG-----------~~i~vDGG~~ 250 (274)
T d2pd4a1 215 RKNVSLEEVGNAGMYLLSSLSSGVSG-----------EVHFVDAGYH 250 (274)
T ss_dssp SSCCCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGG
T ss_pred cCCcCHHHHHHHHHHHhChhhCCCcC-----------ceEEECCChh
Confidence 235678999999999887543 2333 8999988763
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.69 E-value=4.7e-16 Score=149.04 Aligned_cols=227 Identities=12% Similarity=-0.017 Sum_probs=149.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEE-----------------EEeecCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFI-----------------VEGDLND 181 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~-----------------~~~Dl~d 181 (476)
..+|||||++.||+++++.|+++|++|++.+|.+....+.......... ...... ..+|+++
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~ 81 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-PNSAITVQADLSNVATAPVSGADGSAPVTL 81 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhc-CCceEEEEeecccccccccccccccccCCC
Confidence 4789999999999999999999999999998855322222222211111 123333 4456888
Q ss_pred HHHHHHhhccC-----CccEEEEccccCChh----hhhcC--------------hHHHHHHHHHHHHHHHHHHHh-----
Q 011841 182 APLLTKLFDVV-----PFTHVLHLAAQAGVR----YAMQN--------------PQSYVASNIAGFVNLLEVCKS----- 233 (476)
Q Consensus 182 ~~~l~~~~~~~-----~~d~Vi~~Ag~~~~~----~~~~~--------------~~~~~~~nv~gt~~ll~~a~~----- 233 (476)
.++++++++.+ ++|++|||||..... ...++ ....+.+|+.+...+.+.+.+
T Consensus 82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 161 (284)
T d1e7wa_ 82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT 161 (284)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence 88888887643 689999999974321 11111 123678899888888876532
Q ss_pred ----cCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCC
Q 011841 234 ----VNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGR 306 (476)
Q Consensus 234 ----~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~ 306 (476)
.+....+|+++|.....+. .....|+.+|.+.+.+.+.++.++ |+++++|.||.+-.....
T Consensus 162 ~~~~~~~~~~ii~~~s~~~~~~~------------~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~t~~~~~~ 229 (284)
T d1e7wa_ 162 PAKHRGTNYSIINMVDAMTNQPL------------LGYTIYTMAKGALEGLTRSAALELAPLQIRVNGVGPGLSVLVDDM 229 (284)
T ss_dssp CGGGSCSCEEEEEECCTTTTSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCGGGS
T ss_pred HHHhcCCCCcccccccccccCCc------------cceeeeccccccchhhhHHHHHHhCCccccccccccccccccccC
Confidence 2222368888877653221 445789999999999999988764 899999999974332211
Q ss_pred CCCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCccc
Q 011841 307 PDMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPVP 384 (476)
Q Consensus 307 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~vt 384 (476)
...+.+...+..++ . ..+..++|+|++++.++.... .-+| +++.+.+|..++
T Consensus 230 ----~~~~~~~~~~~~pl--~---------~R~~~peeiA~~v~fL~S~~s~~itG-----------~~i~VDGG~sl~ 282 (284)
T d1e7wa_ 230 ----PPAVWEGHRSKVPL--Y---------QRDSSAAEVSDVVIFLCSSKAKYITG-----------TCVKVDGGYSLT 282 (284)
T ss_dssp ----CHHHHHHHHTTCTT--T---------TSCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGGC
T ss_pred ----CHHHHHHHHhcCCC--C---------CCCCCHHHHHHHHHHHhCchhcCccC-----------CeEEECcChhcc
Confidence 13445555554432 0 125678999999998886543 2344 899999886554
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.68 E-value=4.4e-16 Score=145.51 Aligned_cols=213 Identities=18% Similarity=0.150 Sum_probs=149.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc----CC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV----VP 193 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~----~~ 193 (476)
.|++|||||++.||+++++.|+++|++|++++|+.+ ..+....++|+.+......+... ..
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~---------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 65 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE---------------GEDLIYVEGDVTREEDVRRAVARAQEEAP 65 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC---------------SSSSEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc---------------cccceEeeccccchhhhHHHHHhhhcccc
Confidence 479999999999999999999999999999999654 23567788999988776655432 24
Q ss_pred ccEEEEccccCCh--------hhhhcChHHHHHHHHHHHHHHHHHHHhc---------CCCCeEEEecCccccCCCCCCC
Q 011841 194 FTHVLHLAAQAGV--------RYAMQNPQSYVASNIAGFVNLLEVCKSV---------NPQPSIVWASSSSVYGLNTQVP 256 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~--------~~~~~~~~~~~~~nv~gt~~ll~~a~~~---------~~~~~~V~~SS~~vyg~~~~~~ 256 (476)
.+.++++++.... ....+..+..+++|+.+...++..+... ....+||++||...+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~---- 141 (241)
T d1uaya_ 66 LFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ---- 141 (241)
T ss_dssp EEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC----
T ss_pred ccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCC----
Confidence 4666666654221 1122345567899999988887765321 112389999998765322
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEeeCCCC
Q 011841 257 FSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYKTQDDR 333 (476)
Q Consensus 257 ~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (476)
.....|+.+|.+.+.+.+.++.++ ||++++|.||.|..+..... .......+....++ .
T Consensus 142 --------~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~~~--~~~~~~~~~~~~~~--~------ 203 (241)
T d1uaya_ 142 --------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQGL--PEKAKASLAAQVPF--P------ 203 (241)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHTS--CHHHHHHHHTTCCS--S------
T ss_pred --------CCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccchh--hhhHHHHHHhcCCC--C------
Confidence 456789999999999999988764 79999999999977632211 12233334433332 1
Q ss_pred ceeEeceeHHHHHHHHHHHHhhcCcCCCCCCCCCCCCCceEEEEcCCCc
Q 011841 334 EVARDFTYIDDVVKGCVGALDTAGKSTGSGGKKRGPAQLRVYNLGNTSP 382 (476)
Q Consensus 334 ~~~~~~v~v~Dva~a~~~~l~~~~~~~g~~~~~~~~~~~~i~ni~~~~~ 382 (476)
..+..++|+|++++.++.. ..-+| +++.+.+|-.
T Consensus 204 ---~R~g~pedvA~~v~fL~s~-~~iTG-----------~~i~VDGG~~ 237 (241)
T d1uaya_ 204 ---PRLGRPEEYAALVLHILEN-PMLNG-----------EVVRLDGALR 237 (241)
T ss_dssp ---CSCCCHHHHHHHHHHHHHC-TTCCS-----------CEEEESTTCC
T ss_pred ---CCCcCHHHHHHHHHHHHhC-CCCCC-----------CEEEECCccc
Confidence 1245689999999988863 33444 8999988753
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.64 E-value=6e-15 Score=139.71 Aligned_cols=226 Identities=11% Similarity=0.022 Sum_probs=144.4
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC----HHHHHHhhcc---
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND----APLLTKLFDV--- 191 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d----~~~l~~~~~~--- 191 (476)
.++|||||++.||+.++++|+++|++|++++|+.+...+........ .....+.....|+.+ .+.+.++++.
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNA-ARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFR 80 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH-HSTTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHh-hcCCceEEEecccccchhHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999654322211111111 123356666666654 3344444432
Q ss_pred --CCccEEEEccccCChhh---------------hhcChHHHHHHHHHHHHHHHHHHHhcC--------CCCeEEEecCc
Q 011841 192 --VPFTHVLHLAAQAGVRY---------------AMQNPQSYVASNIAGFVNLLEVCKSVN--------PQPSIVWASSS 246 (476)
Q Consensus 192 --~~~d~Vi~~Ag~~~~~~---------------~~~~~~~~~~~nv~gt~~ll~~a~~~~--------~~~~~V~~SS~ 246 (476)
-++|++|||||...... ...........|+.+............ ....++.+|+.
T Consensus 81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (266)
T d1mxha_ 81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA 160 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence 15799999999743211 111122345556555555544433211 11256677766
Q ss_pred cccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCc
Q 011841 247 SVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKT 323 (476)
Q Consensus 247 ~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~ 323 (476)
...... +....|+.+|.+.+.+.+.++.++ |++++.|.||.+..+...+ ..+.+.+.+.-+
T Consensus 161 ~~~~~~------------~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~t~~~~~----~~~~~~~~~~~p 224 (266)
T d1mxha_ 161 MTDLPL------------PGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAPGLSLLPPAMP----QETQEEYRRKVP 224 (266)
T ss_dssp GGGSCC------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSCCSSSC----HHHHHHHHTTCT
T ss_pred cccccC------------cchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEeccCcEeccccCC----HHHHHHHHhcCC
Confidence 543221 456789999999999999988764 7999999999998764333 344455555444
Q ss_pred eEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 324 IDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 324 ~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
+. +.+..++|+|.+++.++.... .-+| +++.+.+|-.+
T Consensus 225 l~-----------r~~~~peeva~~v~fL~s~~s~~itG-----------~~i~vDGG~~l 263 (266)
T d1mxha_ 225 LG-----------QSEASAAQIADAIAFLVSKDAGYITG-----------TTLKVDGGLIL 263 (266)
T ss_dssp TT-----------SCCBCHHHHHHHHHHHHSGGGTTCCS-----------CEEEESTTGGG
T ss_pred CC-----------CCCCCHHHHHHHHHHHhCchhCCccC-----------CeEEECccHhh
Confidence 31 123568999999999887643 3344 89999887543
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.63 E-value=2.1e-15 Score=143.26 Aligned_cols=230 Identities=11% Similarity=0.012 Sum_probs=147.5
Q ss_pred CCCCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 115 RPNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
+.++|++|||||+| +||++++++|+++|++|++++|+... ..+...+. ...+...+++|+.+++++.++++.+
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~----~~~~~~~~-~~~~~~~~~~dv~~~~~~~~~~~~v 77 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR----LIQRITDR-LPAKAPLLELDVQNEEHLASLAGRV 77 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHH----HHHHHHTT-SSSCCCEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHH----HHHHHHHH-cCCceeeEeeecccccccccccchh
Confidence 36889999999654 69999999999999999999985431 11111222 2346778999999998766665432
Q ss_pred --------CccEEEEccccCChh---------hhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCC
Q 011841 193 --------PFTHVLHLAAQAGVR---------YAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQV 255 (476)
Q Consensus 193 --------~~d~Vi~~Ag~~~~~---------~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~ 255 (476)
++|++|||||..... .........+..|+.........+........++.++|.......
T Consensus 78 ~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~--- 154 (268)
T d2h7ma1 78 TEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAM--- 154 (268)
T ss_dssp HHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCC---
T ss_pred hhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccC---
Confidence 579999999974321 111223345566666666666665543332244555444432211
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCC------CCCC----cHHHHHHHHHcCC
Q 011841 256 PFSESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWG------RPDM----AYFFFTKDILQGK 322 (476)
Q Consensus 256 ~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~------~~~~----~~~~~~~~~~~g~ 322 (476)
+....|+.+|.+.+.+++.++.++ |++++.|.||.|-.+.. .... ....+.+...+.-
T Consensus 155 ---------p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (268)
T d2h7ma1 155 ---------PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRA 225 (268)
T ss_dssp ---------TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHHHHHHHHHHHC
T ss_pred ---------cccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhhhhccchhhhhhccchHHHHHHHHhcC
Confidence 345689999999999999988765 79999999999875411 1110 1122223333333
Q ss_pred ceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCCcc
Q 011841 323 TIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTSPV 383 (476)
Q Consensus 323 ~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~~v 383 (476)
|+. +.+..++|+|++++.++.... .-+| +++.+.+|...
T Consensus 226 pl~-----------rr~~~p~dva~~v~fL~Sd~a~~iTG-----------~~i~vDGG~~~ 265 (268)
T d2h7ma1 226 PIG-----------WNMKDATPVAKTVCALLSDWLPATTG-----------DIIYADGGAHT 265 (268)
T ss_dssp TTC-----------CCTTCCHHHHHHHHHHHSSSCTTCCS-----------EEEEESTTGGG
T ss_pred CCC-----------CCCCCHHHHHHHHHHHhCchhcCccC-----------CEEEECcCccc
Confidence 321 224557999999998885322 2233 89999887644
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.59 E-value=3.7e-14 Score=136.50 Aligned_cols=231 Identities=10% Similarity=-0.006 Sum_probs=147.5
Q ss_pred CCCCEEEEECCCC--hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc---------CCc-eEEEEee--c--
Q 011841 116 PNGMTVLVTGAAG--FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ---------KHQ-VFIVEGD--L-- 179 (476)
Q Consensus 116 ~~~~~VLVtGatG--~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~---------~~~-v~~~~~D--l-- 179 (476)
.++|++|||||+| .||+.++++|+++|++|++.+|......... ........ ... -....+| +
T Consensus 6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (297)
T d1d7oa_ 6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFET-SLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHH-HHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHH-HHHHhhhhhhhhhhhhhhhhhhhhhhhhhhccc
Confidence 6899999999987 8999999999999999999988321000000 00000000 001 1222333 1
Q ss_pred ----------------CCHHHHHHhhcc-----CCccEEEEccccCC------hhhhhcChHHHHHHHHHHHHHHHHHHH
Q 011841 180 ----------------NDAPLLTKLFDV-----VPFTHVLHLAAQAG------VRYAMQNPQSYVASNIAGFVNLLEVCK 232 (476)
Q Consensus 180 ----------------~d~~~l~~~~~~-----~~~d~Vi~~Ag~~~------~~~~~~~~~~~~~~nv~gt~~ll~~a~ 232 (476)
.|...++++++. -++|++|||||... .+.+.++....+++|+.+...+++++.
T Consensus 85 ~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~ 164 (297)
T d1d7oa_ 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred cccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHHH
Confidence 222222333332 16799999998632 123445567899999999999998876
Q ss_pred hcCCC-CeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHH----HhCCcEEEEeeCcccCCCCCC
Q 011841 233 SVNPQ-PSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNH----IYGLALTGLRFFTVYGPWGRP 307 (476)
Q Consensus 233 ~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~----~~gi~~~ilRp~~v~G~~~~~ 307 (476)
....+ ..++.+++.+..... ......|..+|.+.+.+++.+.. .+|++++.|+||.+..+....
T Consensus 165 ~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~T~~~~~ 233 (297)
T d1d7oa_ 165 PIMNPGGASISLTYIASERII-----------PGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLGSRAAKA 233 (297)
T ss_dssp GGEEEEEEEEEEECGGGTSCC-----------TTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCBCCCSSC
T ss_pred HHhhcCCcceeeeehhhcccc-----------cccccceecccccccccccccchhccccceEEecccccccccchhhhh
Confidence 54322 245666655433211 13456799999999888776544 358999999999999887655
Q ss_pred CCcHHHHHHHHHcCCceEEEeeCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCCC
Q 011841 308 DMAYFFFTKDILQGKTIDVYKTQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNTS 381 (476)
Q Consensus 308 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~~ 381 (476)
......+.+...+.-|+. .+..++|+|++++.++.... .-+| +++.+.+|-
T Consensus 234 ~~~~~~~~~~~~~~~Plg------------R~~~peevA~~v~fL~S~~a~~itG-----------q~i~vDGG~ 285 (297)
T d1d7oa_ 234 IGFIDTMIEYSYNNAPIQ------------KTLTADEVGNAAAFLVSPLASAITG-----------ATIYVDNGL 285 (297)
T ss_dssp CSHHHHHHHHHHHHSSSC------------CCBCHHHHHHHHHHHTSGGGTTCCS-----------CEEEESTTG
T ss_pred ccCCHHHHHHHHhCCCCC------------CCCCHHHHHHHHHHHhCchhcCCcC-----------ceEEECcCH
Confidence 444555666665554442 24678999999999886533 2344 888888764
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.56 E-value=1.1e-14 Score=142.59 Aligned_cols=175 Identities=11% Similarity=0.042 Sum_probs=116.6
Q ss_pred CCCEEEEEC--CCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhh----hc-----CCceEEEEe--------
Q 011841 117 NGMTVLVTG--AAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKL----LQ-----KHQVFIVEG-------- 177 (476)
Q Consensus 117 ~~~~VLVtG--atG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~----~~-----~~~v~~~~~-------- 177 (476)
++|.+|||| ++.+||..+++.|+++|++|++.++................ .. ........+
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 468999999 55799999999999999999999874431110000000000 00 011223333
Q ss_pred ------------ecCCHHHHHHhhccC-----CccEEEEccccCCh------hhhhcChHHHHHHHHHHHHHHHHHHHhc
Q 011841 178 ------------DLNDAPLLTKLFDVV-----PFTHVLHLAAQAGV------RYAMQNPQSYVASNIAGFVNLLEVCKSV 234 (476)
Q Consensus 178 ------------Dl~d~~~l~~~~~~~-----~~d~Vi~~Ag~~~~------~~~~~~~~~~~~~nv~gt~~ll~~a~~~ 234 (476)
|+.+.++++++++.+ ++|++|||||.... +.+.++....+++|+.++..+++.+...
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 444555555555432 67999999986432 2344567788999999999998887653
Q ss_pred C-CCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----hCCcEEEEeeCcccC
Q 011841 235 N-PQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYAATKKAGEEIAHTYNHI----YGLALTGLRFFTVYG 302 (476)
Q Consensus 235 ~-~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gi~~~ilRp~~v~G 302 (476)
- ...+||.+||.+..... + .....|+.+|.+.+.+++.++.+ +||+++.|.||.|-.
T Consensus 161 m~~~GsIv~iss~~~~~~~----------p-~y~~~y~asKaal~~ltr~lA~Ela~~~gIRVNaI~PG~i~T 222 (329)
T d1uh5a_ 161 MKPQSSIISLTYHASQKVV----------P-GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKS 222 (329)
T ss_dssp EEEEEEEEEEECGGGTSCC----------T-TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_pred cccccccccceeehhcccc----------c-ccchhhhhhhccccccchhhHHHHhcccCcEEEEEecCcccc
Confidence 2 22479999987754221 1 23467999999999998887744 589999999998854
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.47 E-value=1e-12 Score=123.50 Aligned_cols=217 Identities=15% Similarity=0.105 Sum_probs=129.0
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhc----c--
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFD----V-- 191 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~----~-- 191 (476)
+|+||||||++.||++++++|+++|++|++++|+... ...|+.+.+.....+. .
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~--------------------~~~d~~~~~~~~~~~~~~~~~~~ 60 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE--------------------VIADLSTAEGRKQAIADVLAKCS 60 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS--------------------EECCTTSHHHHHHHHHHHHTTCT
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH--------------------HHHHhcCHHHHHHHHHHHHHHhC
Confidence 4788999999999999999999999999999985431 2457776655443322 1
Q ss_pred CCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHH----HhcCCCCeEEEecCccccCCC-CCCCCC--------
Q 011841 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVC----KSVNPQPSIVWASSSSVYGLN-TQVPFS-------- 258 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a----~~~~~~~~~V~~SS~~vyg~~-~~~~~~-------- 258 (476)
..+|+++||||.... .+.......+|..+...+.+.. .+.... ....+++....... ...+..
T Consensus 61 ~~id~lv~~Ag~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 136 (257)
T d1fjha_ 61 KGMDGLVLCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQP-AAVVISSVASAHLAFDKNPLALALEAGEE 136 (257)
T ss_dssp TCCSEEEECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSC-EEEEECCGGGGSSCGGGCTTHHHHHHTCH
T ss_pred CCCcEEEEcCCCCCc---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC-cceeeeeccccchhhhhhhhhhhccCCcE
Confidence 147999999986432 2445667778888877766653 333332 55555554322111 000000
Q ss_pred -------CCCCCCCCCChHHHHHHHHHHHHHHHHHHh---CCcEEEEeeCcccCCCCCCCCcHHHHHHHHHcCCceEEEe
Q 011841 259 -------ESHRTDQPASLYAATKKAGEEIAHTYNHIY---GLALTGLRFFTVYGPWGRPDMAYFFFTKDILQGKTIDVYK 328 (476)
Q Consensus 259 -------E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---gi~~~ilRp~~v~G~~~~~~~~~~~~~~~~~~g~~~~~~~ 328 (476)
.......+...|+.+|.+.+.+.+.++.++ ||+++.|.||.|-.|.......-..+.+.+.+..
T Consensus 137 ~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~------ 210 (257)
T d1fjha_ 137 AKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFV------ 210 (257)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------------------CC------
T ss_pred EEEeeehhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhhcCCHHHHHHHHhcC------
Confidence 000010123469999999999999988664 7999999999997764221100011111111110
Q ss_pred eCCCCceeEeceeHHHHHHHHHHHHhhcC-cCCCCCCCCCCCCCceEEEEcCC
Q 011841 329 TQDDREVARDFTYIDDVVKGCVGALDTAG-KSTGSGGKKRGPAQLRVYNLGNT 380 (476)
Q Consensus 329 ~~~~~~~~~~~v~v~Dva~a~~~~l~~~~-~~~g~~~~~~~~~~~~i~ni~~~ 380 (476)
.....+..++|+|++++.++.... .-+| +++.+.+|
T Consensus 211 -----~PlgR~g~p~eva~~v~fL~S~~s~~itG-----------~~i~vDGG 247 (257)
T d1fjha_ 211 -----PPMGRRAEPSEMASVIAFLMSPAASYVHG-----------AQIVIDGG 247 (257)
T ss_dssp -----CSTTSCCCTHHHHHHHHHHTSGGGTTCCS-----------CEEEESTT
T ss_pred -----CCCCCCcCHHHHHHHHHHHhCchhCCccC-----------ceEEeCCC
Confidence 111235678999999999886543 2343 88988776
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.16 E-value=6.2e-12 Score=112.96 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=69.0
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
..++|+|+||||+|+||+.+++.|+++|++|++++|+.+..+. .........++.+..+|++|.+++++++.++
T Consensus 20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i-- 93 (191)
T d1luaa1 20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQA----AADSVNKRFKVNVTAAETADDASRAEAVKGA-- 93 (191)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH----HHHHHHHHHTCCCEEEECCSHHHHHHHTTTC--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHH----HHHHHHhccchhhhhhhcccHHHHHHHhcCc--
Confidence 3688999999999999999999999999999999996543322 2222233346778999999999999999877
Q ss_pred cEEEEccccC
Q 011841 195 THVLHLAAQA 204 (476)
Q Consensus 195 d~Vi~~Ag~~ 204 (476)
|+||||||..
T Consensus 94 Dilin~Ag~g 103 (191)
T d1luaa1 94 HFVFTAGAIG 103 (191)
T ss_dssp SEEEECCCTT
T ss_pred CeeeecCccc
Confidence 9999999863
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.21 E-value=6e-06 Score=68.22 Aligned_cols=94 Identities=16% Similarity=0.261 Sum_probs=67.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~V 197 (476)
|+|+|+|+ |.+|+.+++.|.++|++|++++.+.+ .. ....+..++.++.+|.+|++.++++ ++.+ |.+
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~-------~~-~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a--~~v 69 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKD-------IC-KKASAEIDALVINGDCTKIKTLEDAGIEDA--DMY 69 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH-------HH-HHHHHHCSSEEEESCTTSHHHHHHTTTTTC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChh-------hh-hhhhhhhhhhhccCcccchhhhhhcChhhh--hhh
Confidence 78999998 99999999999999999999997332 11 1111223788999999999999887 4555 888
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEE
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIV 241 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V 241 (476)
+-+... .+.|+. +...+++.+.+ ++|
T Consensus 70 v~~t~~-------------d~~N~~----~~~~~k~~~~~-~iI 95 (132)
T d1lssa_ 70 IAVTGK-------------EEVNLM----SSLLAKSYGIN-KTI 95 (132)
T ss_dssp EECCSC-------------HHHHHH----HHHHHHHTTCC-CEE
T ss_pred cccCCc-------------HHHHHH----HHHHHHHcCCc-eEE
Confidence 876532 123443 33456777876 665
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.16 E-value=4.5e-06 Score=70.37 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=73.8
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhh----hcCCceEEEEeecCCHHHHHHh
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKL----LQKHQVFIVEGDLNDAPLLTKL 188 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~----~~~~~v~~~~~Dl~d~~~l~~~ 188 (476)
|.+.|+|.|.|+ |++|..++..|+.+| .+|+++|+++.. .+....+. .......+..+|. + .
T Consensus 2 m~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~----~~g~a~Dl~~a~~~~~~~~~~~~d~---~----~ 69 (146)
T d1ez4a1 2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDR----TKGDALDLEDAQAFTAPKKIYSGEY---S----D 69 (146)
T ss_dssp BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHH----HHHHHHHHHGGGGGSCCCEEEECCG---G----G
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccch----hHHHHHHHhccccccCCceEeeccH---H----H
Confidence 356789999996 999999999999987 689999984421 11111111 1222344555553 2 2
Q ss_pred hccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 189 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
++++ |+||..||... ....+..+....|+.-...+++.+.+.+.+.-++.+|
T Consensus 70 ~~~a--divvitag~~~--~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 70 CKDA--DLVVITAGAPQ--KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp GTTC--SEEEECCCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred hccc--cEEEEeccccc--CCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 4566 99999998733 2234556678889999999999999988775555554
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.13 E-value=9.9e-06 Score=67.98 Aligned_cols=114 Identities=20% Similarity=0.134 Sum_probs=78.7
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
+|.|+||+|.+|+.++-.|..+|. ++++++.... +....+.....-......- ....+..+.++++ |+|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~------~~~a~Dl~~~~~~~~~~~~-~~~~~~~~~~~~a--Div 72 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT------PGVAADLSHIETRATVKGY-LGPEQLPDCLKGC--DVV 72 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH------HHHHHHHTTSSSSCEEEEE-ESGGGHHHHHTTC--SEE
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecccc------chhhHHHhhhhhhcCCCeE-EcCCChHHHhCCC--CEE
Confidence 689999999999999999998874 7888887421 1111222211111111112 2345566777888 999
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|..||... ....+..+.++.|+...+.+++.+++.+....++.+|
T Consensus 73 Vitag~~~--~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt 117 (144)
T d1mlda1 73 VIPAGVPR--KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS 117 (144)
T ss_dssp EECCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred EECCCcCC--CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99999732 2334666789999999999999999998875666665
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.88 E-value=5.8e-05 Score=62.02 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=56.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~V 197 (476)
|+++|.|+ |.+|+++++.|.++|++|++++.+. ...+.....+...+.+|.+|++.+.++ ++.+ |.|
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~---------~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a--~~v 68 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINE---------EKVNAYASYATHAVIANATEENELLSLGIRNF--EYV 68 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCH---------HHHHHTTTTCSEEEECCTTCTTHHHHHTGGGC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcH---------HHHHHHHHhCCcceeeecccchhhhccCCccc--cEE
Confidence 56889987 9999999999999999999999732 222233445778889999999999887 6666 888
Q ss_pred EEccc
Q 011841 198 LHLAA 202 (476)
Q Consensus 198 i~~Ag 202 (476)
|-..+
T Consensus 69 i~~~~ 73 (134)
T d2hmva1 69 IVAIG 73 (134)
T ss_dssp EECCC
T ss_pred EEEcC
Confidence 76654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.85 E-value=8.1e-05 Score=62.24 Aligned_cols=112 Identities=20% Similarity=0.129 Sum_probs=74.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHC---CCeEEEEeCCCCCCCchHHHHHHhhhc---CCceEEEEeecCCHHHHHHhhccC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR---GDGVLGLDNFNSYYDPSLKRARQKLLQ---KHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~---G~~V~~~~R~~~~~~~~~~~~~~~~~~---~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
|+|.|+|++|.+|+.++-.|..+ +.++.+.+..+. .+....+... ......+ .+-.+ .+ .+++.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-----~~g~a~Dl~h~~~~~~~~~~-~~~~~---~~-~~~~a 70 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-----TPGVAVDLSHIPTAVKIKGF-SGEDA---TP-ALEGA 70 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-----HHHHHHHHHTSCSSCEEEEE-CSSCC---HH-HHTTC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-----chhHHHHHHCCccccCCcEE-EcCCC---cc-ccCCC
Confidence 78999999999999999888643 478999986321 1111112211 1122221 12222 32 46666
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|+||..||... ....+..+.+..|..-.+.+.+.+.+.+.+.-+|.+|
T Consensus 71 --DvvvitaG~~~--k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt 118 (145)
T d2cmda1 71 --DVVLISAGVRR--KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT 118 (145)
T ss_dssp --SEEEECCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred --CEEEECCCccC--CCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 99999999732 2334666788999999999999999988765566665
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.85 E-value=4.3e-05 Score=65.63 Aligned_cols=75 Identities=21% Similarity=0.137 Sum_probs=55.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
.|+|+|.|| |.+|+.+++.|.++||+|++++|+.+ +...-............+..+.......+... |.+
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~-------~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~ 71 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLE-------SAKKLSAGVQHSTPISLDVNDDAALDAEVAKH--DLV 71 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHH-------HHHHHHTTCTTEEEEECCTTCHHHHHHHHTTS--SEE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChH-------HHHHHHhcccccccccccccchhhhHhhhhcc--cee
Confidence 589999997 99999999999999999999999432 22211122335555666777777888888766 888
Q ss_pred EEccc
Q 011841 198 LHLAA 202 (476)
Q Consensus 198 i~~Ag 202 (476)
+.+..
T Consensus 72 i~~~~ 76 (182)
T d1e5qa1 72 ISLIP 76 (182)
T ss_dssp EECSC
T ss_pred Eeecc
Confidence 86653
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.84 E-value=2.4e-05 Score=65.63 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=75.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhh-----cCCceEEEEeecCCHHHHHHhhcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLL-----QKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~-----~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
|+|.|+||+|.+|..++..|+.+| .++.++++..... ..+....+.. ....+.+...--.|. +.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~--~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSIN--KLEGLREDIYDALAGTRSDANIYVESDENL----RIIDE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHH--HHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhH--hhhcccccchhcccccccCCccccCCcchH----HHhcc
Confidence 789999999999999999999998 5899999743210 0111111111 122344332221222 34566
Q ss_pred CCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEe
Q 011841 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWA 243 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~ 243 (476)
+ |+||-.||.. +....+..+.++.|..-.+.+++...+.+.. .++.+
T Consensus 75 a--DvVVitAG~~--~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~-~iivV 121 (145)
T d1hyea1 75 S--DVVIITSGVP--RKEGMSRMDLAKTNAKIVGKYAKKIAEICDT-KIFVI 121 (145)
T ss_dssp C--SEEEECCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCCC-EEEEC
T ss_pred c--eEEEEecccc--cCCCCChhhhhhhhHHHHHHHHHHHhccCCC-eEEEE
Confidence 6 9999999973 2233466788999999999999999888754 55544
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.83 E-value=8e-05 Score=62.10 Aligned_cols=114 Identities=17% Similarity=0.133 Sum_probs=72.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
++|.|+|+ |.+|..++-.|+.+|. +++++++..+....................+..+| . +.++++ |+
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~----~~~~~a--di 71 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---Y----SDVKDC--DV 71 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---G----GGGTTC--SE
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---H----HHhCCC--ce
Confidence 47889997 9999999999999974 89999987754432211111111112233333332 2 235566 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
||-.||.. +....+..+.+..|..-...+++.+.+.+.+..++.+|
T Consensus 72 vvitag~~--~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 72 IVVTAGAN--RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp EEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred EEEecccc--cCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 99999863 23345667889999999999999999988765566555
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.75 E-value=8.5e-05 Score=62.39 Aligned_cols=117 Identities=24% Similarity=0.214 Sum_probs=77.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHh-hhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQK-LLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
..+++|.|+|| |++|..++..|+.+|. +++++|+.++............ ......+.+...|. +.++++
T Consensus 4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l~da 75 (148)
T d1ldna1 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDCRDA 75 (148)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGTTTC
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHhccc
Confidence 45679999997 9999999999999874 8999997443211100001110 11122455544443 235666
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|+||..||... .......+.+..|..-.+.+++.+.+.+....|+.+|
T Consensus 76 --Dvvvitag~~~--~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 76 --DLVVICAGANQ--KPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp --SEEEECCSCCC--CTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred --eeEEEeccccc--ccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 99999998733 2234556677889999999999998888775666665
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.73 E-value=0.00011 Score=61.15 Aligned_cols=114 Identities=17% Similarity=0.063 Sum_probs=76.4
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCC-CCchHHHHHHh-hhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSY-YDPSLKRARQK-LLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~-~~~~~~~~~~~-~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
+|.|+||+|.+|..++-.|+.+|. ++++++..... ..+.......+ ..-.....+..+|. + .++++ |
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~----~~~~a--D 72 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---E----DTAGS--D 72 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG---G----GGTTC--S
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH---H----Hhhhc--C
Confidence 789999999999999999999974 78888863210 00000111111 11123445554443 2 24566 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
+||-.||.. +....+..+.++.|..-.+.+++.+.+.+.+.-++.+|
T Consensus 73 iVvitaG~~--~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 73 VVVITAGIP--RQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp EEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred EEEEecccc--cccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 999999963 23345677899999999999999999988775566555
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.72 E-value=0.0001 Score=61.29 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=74.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|+|.|+|+ |.+|..++..|+.+| .++.++|++++..............-.....+..+| . +.++++ |+
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~----~~~~~a--di 70 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---Y----ADLKGS--DV 70 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---G----GGGTTC--SE
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---H----HHhcCC--CE
Confidence 68999997 999999999999887 589999875432111100111111112344444433 2 235666 99
Q ss_pred EEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 197 VLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 197 Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
||-.||... .......+.+..|..-...+++...+.+....++.+|
T Consensus 71 vvitag~~~--~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 71 VIVAAGVPQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp EEECCCCCC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred EEEeccccc--CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 999998733 2234556788889999999999999988775555554
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.59 E-value=0.00032 Score=58.26 Aligned_cols=115 Identities=16% Similarity=0.109 Sum_probs=75.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHH-hhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQ-KLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~-~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
|+|.|+|| |.+|+.++..|+..| .++++.|+++............ .........+... .|.+ .++++ |
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~--~~~~----~~~da--d 71 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDYA----DTANS--D 71 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCGG----GGTTC--S
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEec--CCHH----HhcCC--e
Confidence 68999997 999999999999997 5899999866422111101000 0011223444322 2222 35666 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
+||-.||... ....+..+.+..|..-...+++.+.+.+.+..++.+|
T Consensus 72 vvvitag~~~--~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 72 IVIITAGLPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp EEEECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred EEEEEEecCC--CCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 9999998732 2234556788899999999999998888764555554
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.55 E-value=0.00037 Score=57.93 Aligned_cols=114 Identities=19% Similarity=0.121 Sum_probs=74.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.+|.|+|+ |.+|..++-.|+.+|. ++++++++++.... ........ .......+...+ |.+ .++++ |
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g-~a~Dl~~a~~~~~~~~i~~~~--~~~----~~~da--D 71 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEA-EVLDMQHGSSFYPTVSIDGSD--DPE----ICRDA--D 71 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH-HHHHHHHTGGGSTTCEEEEES--CGG----GGTTC--S
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchh-HHHHHHhccccCCCceeecCC--CHH----HhhCC--c
Confidence 47899997 9999999999999974 89999874321100 00001111 111233333322 222 35556 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
+||-.||... ....+..+.+..|..-.+.++..+++.+.+..++.+|
T Consensus 72 vVVitaG~~~--~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 72 MVVITAGPRQ--KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp EEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred EEEEeccccc--CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 9999999733 2345667889999999999999999988764556555
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.55 E-value=0.00035 Score=58.87 Aligned_cols=121 Identities=12% Similarity=0.044 Sum_probs=76.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.+.++|.|+|+ |.+|..++..|+..|. ++++++.+.+............. ........... ...++.++++
T Consensus 5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~a- 77 (154)
T d1pzga1 5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE-----YSYEAALTGA- 77 (154)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE-----CSHHHHHTTC-
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEecc-----CchhhhhcCC-
Confidence 46679999997 9999999998888884 89998875542211111111100 01111112111 1234566777
Q ss_pred ccEEEEccccCChhh---hhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 194 FTHVLHLAAQAGVRY---AMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~---~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|+||-.||...... ...+..+.+..|..-...+++.+.+.+....|+.+|
T Consensus 78 -diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 78 -DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp -SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred -CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99999998743221 112455678889999999999999988874555554
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.50 E-value=0.00033 Score=58.99 Aligned_cols=119 Identities=16% Similarity=0.021 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC----e---EEEEeCCCCCCCchHHHHHHh--hhcCCceEEEEeecCCHHHHH
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD----G---VLGLDNFNSYYDPSLKRARQK--LLQKHQVFIVEGDLNDAPLLT 186 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~----~---V~~~~R~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~l~ 186 (476)
.+.|+|.|+||+|++|++++-.|+..+. + ..+++-.. ..+........ ......+..+...- ...
T Consensus 2 ~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 75 (154)
T d1y7ta1 2 KAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQ--AMKALEGVVMELEDCAFPLLAGLEATD----DPK 75 (154)
T ss_dssp CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGG--GHHHHHHHHHHHHTTTCTTEEEEEEES----CHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhcccc--chhhHcCchhhhhccccccccccccCC----chh
Confidence 3567999999999999999999998752 1 22222110 11111111111 11122344444332 234
Q ss_pred HhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEec
Q 011841 187 KLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWAS 244 (476)
Q Consensus 187 ~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~S 244 (476)
+.++++ |+||-.||.. +....+..+.+..|+.-.+.+.+.+.+... ...++.+|
T Consensus 76 ~~~~~a--dvViitaG~~--~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 76 VAFKDA--DYALLVGAAP--RKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp HHTTTC--SEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred hhcccc--cEEEeecCcC--CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 567777 9999999973 234456778899999999999999888543 22455555
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.48 E-value=0.00037 Score=60.24 Aligned_cols=106 Identities=23% Similarity=0.186 Sum_probs=67.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEE--EeecCCHHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIV--EGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~--~~Dl~d~~~l~~~~~~~~ 193 (476)
..+.+|||+||+|.+|...++.....|.+|++++++.+ +.+.....+...+ .-|-...+.+.+......
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~---------~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~G 98 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE---------KIAYLKQIGFDAAFNYKTVNSLEEALKKASPDG 98 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH---------HHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHH---------HHHHHHhhhhhhhcccccccHHHHHHHHhhcCC
Confidence 46789999999999999999999999999999997321 1122222232222 223333344555555557
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~ 251 (476)
+|+|+++.|... ....++.++..| +++.+.....|+.
T Consensus 99 vd~v~D~vG~~~------------------~~~~~~~l~~~G---~~v~~G~~~~~~~ 135 (182)
T d1v3va2 99 YDCYFDNVGGEF------------------LNTVLSQMKDFG---KIAICGAISVYNR 135 (182)
T ss_dssp EEEEEESSCHHH------------------HHHHGGGEEEEE---EEEECCCGGGTTC
T ss_pred CceeEEecCchh------------------hhhhhhhccCCC---eEEeecceeeccc
Confidence 899999987410 123344444443 7887776665543
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.42 E-value=3.5e-05 Score=66.92 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=32.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
|||.|+||+|.+|+.|++.|+++||+|++.+|+.+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 78999999999999999999999999999999654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00041 Score=54.99 Aligned_cols=73 Identities=14% Similarity=0.205 Sum_probs=57.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
....+|.|.|| |.+|+-++.+..+.|++|++++.+.+.... .---+++.+|..|.+.+.++...+++|
T Consensus 9 ~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~-----------~va~~~i~~~~~d~~~l~~~~~~~~~D 76 (111)
T d1kjqa2 9 PAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM-----------HVAHRSHVINMLDGDALRRVVELEKPH 76 (111)
T ss_dssp TTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG-----------GGSSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchh-----------hcCCeEEECCCCCHHHHHHHHHhhCCc
Confidence 46679999996 999999999999999999999975542111 012356779999999999988766669
Q ss_pred EEEEc
Q 011841 196 HVLHL 200 (476)
Q Consensus 196 ~Vi~~ 200 (476)
+|-.=
T Consensus 77 viT~E 81 (111)
T d1kjqa2 77 YIVPE 81 (111)
T ss_dssp EEEEC
T ss_pred eEEEE
Confidence 88653
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.33 E-value=0.0012 Score=56.64 Aligned_cols=118 Identities=17% Similarity=0.108 Sum_probs=74.0
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCC---C----eEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHH
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRG---D----GVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTK 187 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G---~----~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~ 187 (476)
+..+|.||||+|.||+.++-.|++.+ . .+++++.... .........+. ...+.+..+..- ....+
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~--~~~l~g~~mdl~d~a~~~~~~~~~~----~~~~~ 96 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERS--FQALEGVAMELEDSLYPLLREVSIG----IDPYE 96 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHTTTCTTEEEEEEE----SCHHH
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccc--cchhcchhhhhcccccccccCcccc----ccchh
Confidence 34589999999999999999998753 1 4555554221 11111111111 111222222211 12456
Q ss_pred hhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCC-CCeEEEec
Q 011841 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNP-QPSIVWAS 244 (476)
Q Consensus 188 ~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~-~~~~V~~S 244 (476)
.++++ |+||-.||. .+.......+.+..|..-.+.+.+++.+... ..+++.+|
T Consensus 97 ~~~~a--DvVvi~ag~--~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 97 VFEDV--DWALLIGAK--PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp HTTTC--SEEEECCCC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred hccCC--ceEEEeecc--CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 77877 999999987 3344567778999999999999999988543 22565555
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.32 E-value=0.00034 Score=60.37 Aligned_cols=78 Identities=24% Similarity=0.246 Sum_probs=54.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~ 192 (476)
..+.+|||+||+|.+|...++.+...|.+|+++++.++ +.+.....+...+ .|..+++ .+.+...+.
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~---------~~~~l~~~Ga~~v-i~~~~~~~~~~v~~~t~~~ 93 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA---------KREMLSRLGVEYV-GDSRSVDFADEILELTDGY 93 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH---------HHHHHHTTCCSEE-EETTCSTHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCcccccchhhccccccceeeecccc---------ccccccccccccc-ccCCccCHHHHHHHHhCCC
Confidence 35679999999999999999999999999999987321 1222223343332 3555543 344444556
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+||++.|.
T Consensus 94 g~d~v~d~~g~ 104 (183)
T d1pqwa_ 94 GVDVVLNSLAG 104 (183)
T ss_dssp CEEEEEECCCT
T ss_pred CEEEEEecccc
Confidence 78999999984
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.32 E-value=0.00076 Score=55.90 Aligned_cols=114 Identities=17% Similarity=0.079 Sum_probs=73.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
|+|.|+|+ |.+|..++-.|+.+| .++++++++.+..... .....+.. ......+...+ |. +.+++.
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~-alDl~~~~~~~~~~~~i~~~~--d~----~~~~~a-- 70 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGE-AMDLAHAAAGIDKYPKIVGGA--DY----SLLKGS-- 70 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHH-HHHHHHHHHTTTCCCEEEEES--CG----GGGTTC--
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHH-HHHHhhhccccCCCCccccCC--CH----HHhccc--
Confidence 78999997 999999999999887 4799998743211100 00011111 11122333221 22 245566
Q ss_pred cEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 195 THVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|+||-.||... ....+..+.+..|..-...+.+.+++.+....++.+|
T Consensus 71 diVvitag~~~--~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 71 EIIVVTAGLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp SEEEECCCCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred cEEEEeccccC--CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 99999998632 2334567788899999999999999988764555554
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.27 E-value=0.00018 Score=62.12 Aligned_cols=78 Identities=26% Similarity=0.155 Sum_probs=49.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-HHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~~~ 194 (476)
..+.+|||+||+|.+|...++.+...|.+|++++++++.. ..... . +...+ .|-.+ .++..+...+.++
T Consensus 30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~-----~~~~~-l---Ga~~v-i~~~~~~~~~~~~~~~~gv 99 (176)
T d1xa0a2 30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEH-----DYLRV-L---GAKEV-LAREDVMAERIRPLDKQRW 99 (176)
T ss_dssp GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCH-----HHHHH-T---TCSEE-EECC---------CCSCCE
T ss_pred CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHH-----HHHHh-c---cccee-eecchhHHHHHHHhhccCc
Confidence 4567899999999999999999999999999999865421 11111 1 21111 12222 1223334455578
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||++.|.
T Consensus 100 D~vid~vgg 108 (176)
T d1xa0a2 100 AAAVDPVGG 108 (176)
T ss_dssp EEEEECSTT
T ss_pred CEEEEcCCc
Confidence 999999986
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.26 E-value=0.0012 Score=55.74 Aligned_cols=115 Identities=15% Similarity=0.143 Sum_probs=75.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHh-h-hcCCceEEEEeecCCHHHHHHhhccC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQK-L-LQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~-~-~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
..++|.|+|+ |.+|..++-.|+.+|. ++.++|++.+.... ....... . ..........+| .+ .++++
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g-~alDl~h~~~~~~~~~~~~~~d---~~----~~~~a 89 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKG-EMMDLQHGSLFLQTPKIVADKD---YS----VTANS 89 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH-HHHHHHHTGGGCCCSEEEECSS---GG----GGTTC
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHH-HHHHHhccccccCCCeEEeccc---hh----hcccc
Confidence 4569999996 9999999999999985 89999874321100 0001111 1 111122222223 22 35556
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|+||..||... ....+..+.++.|..-.+.++...++.+.+.-++.+|
T Consensus 90 --diVVitAg~~~--~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 90 --KIVVVTAGVRQ--QEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp --SEEEECCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred --cEEEEecCCcc--ccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 99999999743 2334566788889999999999999988765666666
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.20 E-value=0.00039 Score=58.79 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=73.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCCCCchHHHHHHhhh----c-CCceEEEEeecCCHHHHHHh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSYYDPSLKRARQKLL----Q-KHQVFIVEGDLNDAPLLTKL 188 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~----~-~~~v~~~~~Dl~d~~~l~~~ 188 (476)
....+|.|+|+ |.+|..++..|+.+|. +++++|++.+. .+....+.. . .....+...|. + .
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~----a~g~alDl~~~~~~~~~~~~~~~~d~---~----~ 84 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDK----LRGEALDLQHGSLFLSTPKIVFGKDY---N----V 84 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHH----HHHHHHHHHHTTTTCSCCEEEEESSG---G----G
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchh----hhccHHHHhCcchhcCCCeEEeccch---h----h
Confidence 45568999996 9999999999999974 89999874321 111111111 1 11222233332 2 3
Q ss_pred hccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 189 FDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 189 ~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
++++ |+||..||.... ...+..+.++.|+.-.+.++...++.+.+..++.+|
T Consensus 85 ~~~a--divvitag~~~~--~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt 136 (159)
T d2ldxa1 85 SANS--KLVIITAGARMV--SGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT 136 (159)
T ss_dssp GTTE--EEEEECCSCCCC--TTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred hccc--cEEEEecccccC--CCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence 4555 999999987332 234444567889999999998888888775666665
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.16 E-value=0.00091 Score=55.65 Aligned_cols=115 Identities=14% Similarity=0.059 Sum_probs=71.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCCCCCchHHHHHHhhh--cCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNSYYDPSLKRARQKLL--QKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~~~~~~~~~~~~~~~--~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
|+|.|+|+ |.+|..++-.|+.+| .++++.+++.+..... .....+.. ......+...| .+ .++++
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~-~~Dl~~a~~~~~~~~~~~~~d---~~----~l~~a-- 70 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKAD-QIDFQDAMANLEAHGNIVIND---WA----ALADA-- 70 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHH-HHHHHHHGGGSSSCCEEEESC---GG----GGTTC--
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhH-HHhhhccccccCCccceeccC---HH----Hhccc--
Confidence 68999996 999999999999987 4899988744321110 01111111 12234444444 22 34566
Q ss_pred cEEEEccccCChhh--hhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 195 THVLHLAAQAGVRY--AMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~--~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|+||-.||...... ...+..+.++.|..-.+.+.+..++.+...-||.+|
T Consensus 71 diVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 71 DVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp SEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred cEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 99999998632110 111223457789999999999999888775566555
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.14 E-value=0.00074 Score=56.78 Aligned_cols=118 Identities=14% Similarity=0.031 Sum_probs=69.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-------eEEEEeCCCCCCCchHHHHHHhh--hcCCceEEEEeecCCHHHHHH
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-------GVLGLDNFNSYYDPSLKRARQKL--LQKHQVFIVEGDLNDAPLLTK 187 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-------~V~~~~R~~~~~~~~~~~~~~~~--~~~~~v~~~~~Dl~d~~~l~~ 187 (476)
+.++|.|+||+|.+|++++-.|+..+- +++..+.+.. .........+. ........+..- ....+
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~ 75 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM--MGVLDGVLMELQDCALPLLKDVIAT----DKEEI 75 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHHTCCTTEEEEEEE----SCHHH
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc--hhhhhhhhhhhcccccccccccccC----ccccc
Confidence 457999999999999999999986541 3455543211 11111111111 112223222221 11345
Q ss_pred hhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhc-CCCCeEEEec
Q 011841 188 LFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSV-NPQPSIVWAS 244 (476)
Q Consensus 188 ~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~-~~~~~~V~~S 244 (476)
.++++ |+||-.+|.... ...+..+.+..|..-.+.+.+.+.+. +....++.+|
T Consensus 76 ~~~~~--dvVVitag~~~~--~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 76 AFKDL--DVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp HTTTC--SEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred ccCCc--eEEEEecccCCC--CCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 67777 999999987332 23445567888999999999887664 4332344454
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.0031 Score=52.43 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=56.5
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhh-ccCCccEEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLF-DVVPFTHVL 198 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~-~~~~~d~Vi 198 (476)
.|+|+|. |-+|..+++.|.++|++|++++.+.+ ............++.++.||.+|++.++++- +.+ +.||
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~-----~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a--~~vi 76 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPE-----DDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRC--RAIL 76 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCH-----HHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTC--SEEE
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccch-----hHHHHHHHhhcCCcEEEEccCcchHHHHHhccccC--CEEE
Confidence 5899997 99999999999999999999986332 1112222233458999999999999887753 444 8888
Q ss_pred Eccc
Q 011841 199 HLAA 202 (476)
Q Consensus 199 ~~Ag 202 (476)
-+..
T Consensus 77 ~~~~ 80 (153)
T d1id1a_ 77 ALSD 80 (153)
T ss_dssp ECSS
T ss_pred Eccc
Confidence 7764
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.05 E-value=0.0011 Score=56.53 Aligned_cols=78 Identities=22% Similarity=0.272 Sum_probs=53.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH---HHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~~~~ 192 (476)
..+.+|||+||+|.+|...++.+...|.+|++++++.+ +.+....-+...+ .|..+.+. +.+...+.
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~---------~~~~~~~~Ga~~v-i~~~~~~~~~~i~~~t~~~ 96 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEE---------GQKIVLQNGAHEV-FNHREVNYIDKIKKYVGEK 96 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHH---------HHHHHHHTTCSEE-EETTSTTHHHHHHHHHCTT
T ss_pred CCCCEEEEEeccccccccccccccccCccccccccccc---------ccccccccCcccc-cccccccHHHHhhhhhccC
Confidence 35679999999999999999999999999999997321 1111111233222 36665543 34444556
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
.+|+||++.|.
T Consensus 97 g~d~v~d~~g~ 107 (174)
T d1yb5a2 97 GIDIIIEMLAN 107 (174)
T ss_dssp CEEEEEESCHH
T ss_pred CceEEeecccH
Confidence 78999999874
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00052 Score=57.16 Aligned_cols=99 Identities=11% Similarity=-0.037 Sum_probs=58.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCC----CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRG----DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G----~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
+++|.|.||||++|+.+++.|+++. .+++.+.+....... ....+-.....++.+.+. ++++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~---------~~~~~~~~~~~~~~~~~~----~~~~- 66 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA---------PSFGGTTGTLQDAFDLEA----LKAL- 66 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC---------CGGGTCCCBCEETTCHHH----HHTC-
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc---------ccccCCceeeecccchhh----hhcC-
Confidence 3689999999999999999988763 356666654332111 000111122233444333 4555
Q ss_pred ccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCC
Q 011841 194 FTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGL 251 (476)
Q Consensus 194 ~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~ 251 (476)
|+++.+++. .....+...+.+.|.+ .+.++.++.|-.
T Consensus 67 -DivF~a~~~------------------~~s~~~~~~~~~~g~~--~~VID~Ss~fR~ 103 (146)
T d1t4ba1 67 -DIIVTCQGG------------------DYTNEIYPKLRESGWQ--GYWIDAASSLRM 103 (146)
T ss_dssp -SEEEECSCH------------------HHHHHHHHHHHHTTCC--CEEEECSSTTTT
T ss_pred -cEEEEecCc------------------hHHHHhhHHHHhcCCC--eecccCCccccc
Confidence 999998853 1134566667777763 455565555543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.00 E-value=0.0018 Score=54.87 Aligned_cols=79 Identities=20% Similarity=0.122 Sum_probs=48.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeec--CCHHHHHHhhc---
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL--NDAPLLTKLFD--- 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~l~~~~~--- 190 (476)
..+.+|+|+| .|.||...++.+...|.+|++++++.+ +.+...+. .... .+..|- .+.+.+.+.+.
T Consensus 25 ~~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~-----r~~~a~~~--ga~~-~~~~~~~~~~~~~~~~~~~~~~ 95 (170)
T d1e3ja2 25 QLGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPR-----RLEVAKNC--GADV-TLVVDPAKEEESSIIERIRSAI 95 (170)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHH-----HHHHHHHT--TCSE-EEECCTTTSCHHHHHHHHHHHS
T ss_pred CCCCEEEEEc-ccccchhhHhhHhhhcccccccchHHH-----HHHHHHHc--CCcE-EEeccccccccchhhhhhhccc
Confidence 3556899998 599999999999999999999998332 11111111 1122 222232 23333333332
Q ss_pred cCCccEEEEcccc
Q 011841 191 VVPFTHVLHLAAQ 203 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~ 203 (476)
+..+|+||+++|.
T Consensus 96 g~g~D~vid~~g~ 108 (170)
T d1e3ja2 96 GDLPNVTIDCSGN 108 (170)
T ss_dssp SSCCSEEEECSCC
T ss_pred ccCCceeeecCCC
Confidence 3467999999985
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.98 E-value=0.0034 Score=49.45 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=65.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++++|||.|+ |-+|..-++.|++.|.+|++.+.... ..........++.+...+..+. .++++ +
T Consensus 10 l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~-------~~~~~~~~~~~i~~~~~~~~~~-----dl~~~--~ 74 (113)
T d1pjqa1 10 LRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFI-------PQFTVWANEGMLTLVEGPFDET-----LLDSC--W 74 (113)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCC-------HHHHHHHTTTSCEEEESSCCGG-----GGTTC--S
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCC-------hHHHHHHhcCCceeeccCCCHH-----HhCCC--c
Confidence 57799999997 99999999999999999999986432 2233334455788887665542 24444 7
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
.|+.+.+. -.-...+.+.|++.++ +|++..
T Consensus 75 lv~~at~d-----------------~~~n~~i~~~a~~~~i---lVNv~D 104 (113)
T d1pjqa1 75 LAIAATDD-----------------DTVNQRVSDAAESRRI---FCNVVD 104 (113)
T ss_dssp EEEECCSC-----------------HHHHHHHHHHHHHTTC---EEEETT
T ss_pred EEeecCCC-----------------HHHHHHHHHHHHHcCC---EEEeCC
Confidence 77766542 1112367788888875 677653
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.97 E-value=0.0029 Score=52.17 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=67.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhh-----hcCCceEEEE-eecCCHHHHHHhhcc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKL-----LQKHQVFIVE-GDLNDAPLLTKLFDV 191 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~-----~~~~~v~~~~-~Dl~d~~~l~~~~~~ 191 (476)
++|.|+|+ |.+|..++-.|+.++. ++++++...+.. .....+. .......+.. .|. + .+++
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~----~~~~~Dl~~~~~~~~~~~~i~~~~d~---~----~~~~ 69 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVP----QGKALDLYEASPIEGFDVRVTGTNNY---A----DTAN 69 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHH----HHHHHHHHTTHHHHTCCCCEEEESCG---G----GGTT
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccc----hhHHHHhhccccccCCCCEEEecCcH---H----HhcC
Confidence 68999997 9999999999988874 899998755421 1111111 1111233332 232 2 2345
Q ss_pred CCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
. |+||-.||.... ...+..+.+..|..-.+.+++...+.+.+..++.+|
T Consensus 70 a--dvvvitag~~~~--~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 70 S--DVIVVTSGAPRK--PGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp C--SEEEECCSCC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred C--CEEEEeeeccCC--cCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 5 999999997332 223445667889999999999999988774555544
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.91 E-value=0.0037 Score=52.04 Aligned_cols=117 Identities=10% Similarity=0.091 Sum_probs=73.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHh--hhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQK--LLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~--~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
+++|.|+|+ |.+|..++..|+.++ .++.++++..+..... ...... ........+...+ +. +.+++.
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~-a~Dl~~~~~~~~~~~~v~~~~--~~----~~~~~a-- 72 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGK-ALDTSHTNVMAYSNCKVSGSN--TY----DDLAGA-- 72 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHH-HHHHHTHHHHHTCCCCEEEEC--CG----GGGTTC--
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceee-ecchhhhccccCCCcEEEecc--cc----cccCCC--
Confidence 358999996 999999998888776 4888888755321111 111111 1112233344332 22 234556
Q ss_pred cEEEEccccCChhh---hhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 195 THVLHLAAQAGVRY---AMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 195 d~Vi~~Ag~~~~~~---~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|+||-.+|.....- ...+....+..|..-.+.+++.+++.+....|+.+|
T Consensus 73 dvvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 73 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred cEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 99999999643211 112355678899999999999999988764556555
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.81 E-value=0.0006 Score=58.50 Aligned_cols=33 Identities=30% Similarity=0.258 Sum_probs=31.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
|+|.|.|| |.+|..++..|.++||+|++.+|+.
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence 79999998 9999999999999999999999943
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.003 Score=54.36 Aligned_cols=84 Identities=14% Similarity=0.189 Sum_probs=63.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
.++++|+|.|+ |+.|+.++..|.+.|. ++++++|..+..++... ...+....-.......|+.+.+.+...+...
T Consensus 16 l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (182)
T d1vi2a1 16 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALA-FAQRVNENTDCVVTVTDLADQQAFAEALASA-- 91 (182)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHH-HHHHHHHHSSCEEEEEETTCHHHHHHHHHTC--
T ss_pred cCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHH-HHHHHHhhcCcceEeeecccccchhhhhccc--
Confidence 57789999997 8999999999999986 78899987665443222 2222223334556778999999888888777
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+|||+...
T Consensus 92 diiIN~Tp~ 100 (182)
T d1vi2a1 92 DILTNGTKV 100 (182)
T ss_dssp SEEEECSST
T ss_pred ceeccccCC
Confidence 999999754
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.002 Score=55.00 Aligned_cols=77 Identities=18% Similarity=0.129 Sum_probs=53.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH---HHHhhccCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDVVP 193 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~~~~~ 193 (476)
.+.+|||+||+|.+|..+++.+...|.+|++++++++ ..+...+ -+...+ .|..+++. +.++-.+..
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~-----k~~~~~~----lGa~~v-i~~~~~d~~~~v~~~t~g~g 97 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ-----KAQSALK----AGAWQV-INYREEDLVERLKEITGGKK 97 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH-----HHHHHHH----HTCSEE-EETTTSCHHHHHHHHTTTCC
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchH-----HHHHHHh----cCCeEE-EECCCCCHHHHHHHHhCCCC
Confidence 4679999999999999999999999999999998432 1111111 132222 36655443 444445667
Q ss_pred ccEEEEcccc
Q 011841 194 FTHVLHLAAQ 203 (476)
Q Consensus 194 ~d~Vi~~Ag~ 203 (476)
+|+|+++.+.
T Consensus 98 ~d~v~d~~g~ 107 (179)
T d1qora2 98 VRVVYDSVGR 107 (179)
T ss_dssp EEEEEECSCG
T ss_pred eEEEEeCccH
Confidence 8999999975
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.65 E-value=0.00096 Score=57.00 Aligned_cols=76 Identities=17% Similarity=0.093 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+.+|||+||+|.+|...++.+...|.+|++++++.+.. +..+. -+...+ .|..+. ..++-.+.++|
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~----~~~~~-----lGa~~~-i~~~~~--~~~~~~~~g~D 93 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL----ALPLA-----LGAEEA-ATYAEV--PERAKAWGGLD 93 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS----HHHHH-----TTCSEE-EEGGGH--HHHHHHTTSEE
T ss_pred CCCCEEEEEeccccchhhhhhhhccccccccccccccccc----ccccc-----ccccee-eehhhh--hhhhhcccccc
Confidence 4678999999999999999999999999999999854322 11111 122222 244332 23333344579
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+||++.|.
T Consensus 94 ~v~d~~G~ 101 (171)
T d1iz0a2 94 LVLEVRGK 101 (171)
T ss_dssp EEEECSCT
T ss_pred ccccccch
Confidence 99998773
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.65 E-value=0.0025 Score=52.72 Aligned_cols=33 Identities=30% Similarity=0.275 Sum_probs=27.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCC---eEEEEeC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGD---GVLGLDN 150 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~---~V~~~~R 150 (476)
.|+|.|.||||++|+.+++.|.+++| ++..+..
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s 37 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLAS 37 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEee
Confidence 47899999999999999999987654 6666654
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.57 E-value=0.0031 Score=49.96 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=44.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC---CchHHHHHHhhhcCCceEEEEe
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVEG 177 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~---~~~~~~~~~~~~~~~~v~~~~~ 177 (476)
.++|+|.|| |++|-.++..|.+.|.+|+++.|...-. ++.......+.+...+++++..
T Consensus 22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI~i~~~ 83 (117)
T d1ebda2 22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVVTN 83 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEES
T ss_pred CCeEEEECC-CccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCCEEEcC
Confidence 478999997 9999999999999999999999887543 3344444445555556666553
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.57 E-value=0.0043 Score=49.58 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=46.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC----CchHHHHHHhhhcCCceEEEEe
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY----DPSLKRARQKLLQKHQVFIVEG 177 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~----~~~~~~~~~~~~~~~~v~~~~~ 177 (476)
..++|+|.|| |++|-.++..|.++|.+|+++.+.+.-. ++.......+.+...+|+++..
T Consensus 29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~~l~~~GV~i~~~ 92 (121)
T d1d7ya2 29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFE 92 (121)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEEES
T ss_pred cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHHHHHHCCcEEEeC
Confidence 4579999997 9999999999999999999999987543 3344444455566667777654
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=96.54 E-value=0.0051 Score=49.22 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=46.4
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC----CCchHHHHHHhhhcCCceEEEEe
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY----YDPSLKRARQKLLQKHQVFIVEG 177 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~----~~~~~~~~~~~~~~~~~v~~~~~ 177 (476)
..++|+|.|| |++|-.++..|.+.|.+|+++.+.+.. .++.......+.+...+++++..
T Consensus 29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~ 92 (123)
T d1nhpa2 29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATG 92 (123)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEES
T ss_pred CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeC
Confidence 4679999997 999999999999999999999987643 24444555555566667777664
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.51 E-value=0.006 Score=52.16 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=49.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC--HH----HHHHh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND--AP----LLTKL 188 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~----~l~~~ 188 (476)
..+.+|||+|+ |.||...++.+...|. +|++++++.+ +.+....-+...+ .|..+ .. .+.++
T Consensus 27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~---------~~~~a~~lGa~~v-i~~~~~~~~~~~~~i~~~ 95 (182)
T d1vj0a2 27 FAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPN---------RLKLAEEIGADLT-LNRRETSVEERRKAIMDI 95 (182)
T ss_dssp CBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHH---------HHHHHHHTTCSEE-EETTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECC-Cccchhheecccccccccccccccccc---------cccccccccceEE-EeccccchHHHHHHHHHh
Confidence 35679999997 9999999999999997 7999987332 1111111122111 23332 22 23444
Q ss_pred hccCCccEEEEcccc
Q 011841 189 FDVVPFTHVLHLAAQ 203 (476)
Q Consensus 189 ~~~~~~d~Vi~~Ag~ 203 (476)
..+..+|+||.+.|.
T Consensus 96 ~~~~g~Dvvid~vG~ 110 (182)
T d1vj0a2 96 THGRGADFILEATGD 110 (182)
T ss_dssp TTTSCEEEEEECSSC
T ss_pred hCCCCceEEeecCCc
Confidence 445568999999986
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.50 E-value=0.0046 Score=53.28 Aligned_cols=77 Identities=14% Similarity=-0.017 Sum_probs=46.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEE-eCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhccC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDVV 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~-~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~~ 192 (476)
.+.+|||+||+|.+|...++.....|.++++. ++.+ +.........+.. ...|..+++ .++++. ..
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~--------e~~~~l~~~~gad-~vi~~~~~~~~~~~~~~~-~~ 99 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQ--------EKCLFLTSELGFD-AAVNYKTGNVAEQLREAC-PG 99 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSH--------HHHHHHHHHSCCS-EEEETTSSCHHHHHHHHC-TT
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchH--------HHHhhhhhcccce-EEeeccchhHHHHHHHHh-cc
Confidence 44789999999999999999999999865554 4311 1111111111221 223444432 333333 34
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|+|+++.|.
T Consensus 100 GvDvv~D~vGg 110 (187)
T d1vj1a2 100 GVDVYFDNVGG 110 (187)
T ss_dssp CEEEEEESSCH
T ss_pred CceEEEecCCc
Confidence 67999999974
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.50 E-value=0.0037 Score=49.63 Aligned_cols=59 Identities=17% Similarity=0.234 Sum_probs=45.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC---CchHHHHHHhhhcCCceEEEE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVE 176 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~---~~~~~~~~~~~~~~~~v~~~~ 176 (476)
+.++|+|.|| |++|-.++..|.+.|.+|+++.|...-. ++.......+.++..+++++.
T Consensus 21 ~p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV~i~~ 82 (117)
T d1onfa2 21 ESKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNINIVT 82 (117)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCEEEEECC-chHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCCEEEE
Confidence 3579999997 9999999999999999999999977543 444555555555555666653
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.00087 Score=49.20 Aligned_cols=37 Identities=35% Similarity=0.457 Sum_probs=33.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
.++++|||+||+|.+|...++.+...|++|++++++.
T Consensus 30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~ 66 (77)
T d1o8ca2 30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE 66 (77)
T ss_dssp GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence 3567899999999999999999999999999998844
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.47 E-value=0.0023 Score=53.19 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=34.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
.+.++|.|.||.|.+|+.+++.|.++||+|++.+|...
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~ 44 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW 44 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence 45579999999999999999999999999999999653
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.45 E-value=0.015 Score=44.24 Aligned_cols=73 Identities=18% Similarity=0.099 Sum_probs=48.6
Q ss_pred CCCCCCEEEEECCCChhh-HHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 114 RRPNGMTVLVTGAAGFVG-SHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG-~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
.+...++|.+.|- |.+| +.||+.|.++|++|.+.|+... + ....+...++.+..++- ++ .+++.
T Consensus 4 ~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~---~-----~~~~L~~~Gi~v~~g~~--~~----~i~~~ 68 (96)
T d1p3da1 4 EMRRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADG---V-----VTQRLAQAGAKIYIGHA--EE----HIEGA 68 (96)
T ss_dssp CCTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCS---H-----HHHHHHHTTCEEEESCC--GG----GGTTC
T ss_pred cchhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCC---h-----hhhHHHHCCCeEEECCc--cc----cCCCC
Confidence 3456789999986 5555 7789999999999999998532 1 11222234777766543 22 23344
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
|.||.-.|.
T Consensus 69 --d~vV~S~AI 77 (96)
T d1p3da1 69 --SVVVVSSAI 77 (96)
T ss_dssp --SEEEECTTS
T ss_pred --CEEEECCCc
Confidence 889888876
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.44 E-value=0.0062 Score=51.14 Aligned_cols=32 Identities=28% Similarity=0.566 Sum_probs=30.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
|+|.|.|. |.+|..+++.|.++|++|++.+|+
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQ 32 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECC
Confidence 78999986 999999999999999999999984
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.42 E-value=0.014 Score=50.75 Aligned_cols=33 Identities=36% Similarity=0.714 Sum_probs=30.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
|+|.|.|. |++|..++..|+++|++|++.|.+.
T Consensus 1 MkI~ViGl-G~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 1 MRISIFGL-GYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECC-CHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 78999985 9999999999999999999999743
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.41 E-value=0.0049 Score=52.54 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=49.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC---HHHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND---APLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d---~~~l~~~~~~ 191 (476)
..+.+|+|.|+ |.||...++.+...|. +|++++++.+ +.+...+. +... ..|..+ .+.+.+...+
T Consensus 26 ~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~-----r~~~a~~l----Ga~~-~i~~~~~~~~~~v~~~t~g 94 (174)
T d1jqba2 26 EMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPI-----CVEAAKFY----GATD-ILNYKNGHIEDQVMKLTNG 94 (174)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHH-----HHHHHHHH----TCSE-EECGGGSCHHHHHHHHTTT
T ss_pred CCCCEEEEEcC-Ccchhhhhhhhhcccccccccccchhh-----hHHHHHhh----Cccc-cccccchhHHHHHHHHhhc
Confidence 35668999987 9999999999999997 6888887321 11111111 2211 123333 3445555556
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
..+|+||.++|.
T Consensus 95 ~G~D~vid~~g~ 106 (174)
T d1jqba2 95 KGVDRVIMAGGG 106 (174)
T ss_dssp SCEEEEEECSSC
T ss_pred cCcceEEEccCC
Confidence 668999999986
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.39 E-value=0.0073 Score=53.67 Aligned_cols=76 Identities=20% Similarity=0.118 Sum_probs=52.5
Q ss_pred CCCCEEEEEC----------------CCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeec
Q 011841 116 PNGMTVLVTG----------------AAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL 179 (476)
Q Consensus 116 ~~~~~VLVtG----------------atG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl 179 (476)
..+|+||||+ .||..|.+|++++..+|++|+++.-..... ...++.++..
T Consensus 4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~------------~p~~~~~~~~-- 69 (223)
T d1u7za_ 4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP------------TPPFVKRVDV-- 69 (223)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC------------CCTTEEEEEC--
T ss_pred cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccC------------ccccccccee--
Confidence 4677788774 569999999999999999999998643321 1225555543
Q ss_pred CCHHH----HHHhhccCCccEEEEccccCChh
Q 011841 180 NDAPL----LTKLFDVVPFTHVLHLAAQAGVR 207 (476)
Q Consensus 180 ~d~~~----l~~~~~~~~~d~Vi~~Ag~~~~~ 207 (476)
...++ +.+.+..+ |++|++|+.....
T Consensus 70 ~t~~~m~~~~~~~~~~~--D~~i~aAAvsDf~ 99 (223)
T d1u7za_ 70 MTALEMEAAVNASVQQQ--NIFIGCAAVADYR 99 (223)
T ss_dssp CSHHHHHHHHHHHGGGC--SEEEECCBCCSEE
T ss_pred hhhHHHHHHHHhhhccc--eeEeeeechhhhh
Confidence 33333 33444555 9999999986653
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.38 E-value=0.0041 Score=49.80 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=44.8
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC--CCCCchHHHHHHhhhcCCceEEEEe
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN--SYYDPSLKRARQKLLQKHQVFIVEG 177 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~--~~~~~~~~~~~~~~~~~~~v~~~~~ 177 (476)
.++++|.|| |+||-.++..|.+.|.+|+++.|+. ...++.........+...+++++..
T Consensus 20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l~~~l~~~Gv~i~~~ 80 (122)
T d1h6va2 20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHMEEHGIKFIRQ 80 (122)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHHHHHHHHTTEEEEES
T ss_pred CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHHHHHHHHCCCEEEEC
Confidence 357999997 9999999999999999999999854 2345555555555566667777654
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.0019 Score=54.22 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=32.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY 154 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~ 154 (476)
|||+|.|+ |.||..++..|.+.|++|++++|..+.
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~ 35 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQP 35 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence 79999998 999999999999999999999997653
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.34 E-value=0.0045 Score=49.70 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=43.8
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC---CchHHHHHHhhhcCCceEEEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVE 176 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~---~~~~~~~~~~~~~~~~v~~~~ 176 (476)
.++|+|.|| |+||-.++..|.+.|.+|+++.|...-. ++...+...+.++..+++++.
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~ 82 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLK 82 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEET
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEe
Confidence 378999997 9999999999999999999999987543 444555544555555655543
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.34 E-value=0.0064 Score=51.03 Aligned_cols=72 Identities=22% Similarity=0.129 Sum_probs=50.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
.++++|||+|+ |-+|+.+++.|...|. +|++..|..+ ....... .-+.+. .+.+++.+.+..+
T Consensus 22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~-----ka~~l~~---~~~~~~-----~~~~~~~~~l~~~-- 85 (159)
T d1gpja2 22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYE-----RAVELAR---DLGGEA-----VRFDELVDHLARS-- 85 (159)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHH-----HHHHHHH---HHTCEE-----CCGGGHHHHHHTC--
T ss_pred cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHH-----HHHHHHH---hhhccc-----ccchhHHHHhccC--
Confidence 57789999997 9999999999999997 6888888322 1111111 112222 2345677777766
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||.+.+.
T Consensus 86 Divi~atss 94 (159)
T d1gpja2 86 DVVVSATAA 94 (159)
T ss_dssp SEEEECCSS
T ss_pred CEEEEecCC
Confidence 999999875
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.33 E-value=0.0046 Score=49.42 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=43.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC---CCchHHHHHHhhhcCCceEEEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---YDPSLKRARQKLLQKHQVFIVE 176 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~---~~~~~~~~~~~~~~~~~v~~~~ 176 (476)
.++++|.|| |+||-.++..|.+.|.+|+++.+.+.- .++......+..++..+++++.
T Consensus 23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~ 83 (122)
T d1v59a2 23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKL 83 (122)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEEC
T ss_pred CCeEEEECC-CchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEe
Confidence 479999997 999999999999999999999987744 3444444444445455555543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.32 E-value=0.023 Score=47.78 Aligned_cols=77 Identities=18% Similarity=0.169 Sum_probs=49.9
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCce-EEEEeecCCHHHHHHhhc---c
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQV-FIVEGDLNDAPLLTKLFD---V 191 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d~~~l~~~~~---~ 191 (476)
.+.+|+|.|+ |.+|...++.+...|. +|++++++.+ +.+....-+. +++..+-.+.....+.+. +
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~---------rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g 95 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT---------RLSKAKEIGADLVLQISKESPQEIARKVEGQLG 95 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH---------HHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHH---------HHHHHHHhCCcccccccccccccccccccccCC
Confidence 4568999987 9999999999999998 7999887332 1111111133 233333344444444432 3
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
.++|+||.+.|.
T Consensus 96 ~g~Dvvid~~G~ 107 (171)
T d1pl8a2 96 CKPEVTIECTGA 107 (171)
T ss_dssp SCCSEEEECSCC
T ss_pred CCceEEEeccCC
Confidence 467999999985
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0068 Score=45.82 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=58.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++|+|+|.|. |-.|..+++.|.++|++|++.+........ ... ...+.+..+.. +. ..+++. |
T Consensus 3 ~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-------~~~-~~~~~~~~~~~-~~----~~~~~~--d 66 (93)
T d2jfga1 3 YQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGL-------DKL-PEAVERHTGSL-ND----EWLMAA--D 66 (93)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTG-------GGS-CTTSCEEESBC-CH----HHHHHC--S
T ss_pred cCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhH-------HHH-hhccceeeccc-ch----hhhccC--C
Confidence 46789999998 889999999999999999999985542211 111 12444444443 22 234445 9
Q ss_pred EEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCC
Q 011841 196 HVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQ 237 (476)
Q Consensus 196 ~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~ 237 (476)
.||-.-|... + ..+++.|++.|++
T Consensus 67 ~vi~SPGi~~-----~-------------~~~~~~a~~~gi~ 90 (93)
T d2jfga1 67 LIVASPGIAL-----A-------------HPSLSAAADAGIE 90 (93)
T ss_dssp EEEECTTSCT-----T-------------SHHHHHHHHTTCE
T ss_pred EEEECCCCCC-----C-------------CHHHHHHHHcCCC
Confidence 9998777521 1 2577778888763
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.30 E-value=0.0058 Score=48.55 Aligned_cols=59 Identities=24% Similarity=0.324 Sum_probs=45.0
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC---CCchHHHHHHhhhcCCceEEEE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---YDPSLKRARQKLLQKHQVFIVE 176 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~---~~~~~~~~~~~~~~~~~v~~~~ 176 (476)
-.++++|.|| |+||-.++..|.+.|.+|+++.|...- .++......++.+...+++++.
T Consensus 21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~ 82 (119)
T d3lada2 21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILL 82 (119)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeec
Confidence 3478999997 999999999999999999999987753 3444555555555555666554
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.29 E-value=0.0024 Score=51.68 Aligned_cols=73 Identities=15% Similarity=0.329 Sum_probs=52.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|.|.|++|-+|+.|++.+.++|+++.+..- .... +.++ ++|+||
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id----------------------------~~~~----~~~~--~~DVvI 46 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVD----------------------------VNGV----EELD--SPDVVI 46 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEE----------------------------TTEE----EECS--CCSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEEC----------------------------CCcH----HHhc--cCCEEE
Confidence 68999999999999999999999998876531 0000 1123 349999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
+..-+. ++...++.|.+.+. .+|.-+|
T Consensus 47 DFS~p~------------------~~~~~l~~~~~~~~--p~ViGTT 73 (128)
T d1vm6a3 47 DFSSPE------------------ALPKTVDLCKKYRA--GLVLGTT 73 (128)
T ss_dssp ECSCGG------------------GHHHHHHHHHHHTC--EEEECCC
T ss_pred EecCHH------------------HHHHHHHHHHhcCC--CEEEEcC
Confidence 987542 25678889999987 4664444
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.17 E-value=0.025 Score=46.54 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=25.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC----CeEEEEeC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG----DGVLGLDN 150 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G----~~V~~~~R 150 (476)
|+|.|.||||++|+.+++.|+++. .++..+..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss 36 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFST 36 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEES
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecc
Confidence 789999999999999999988753 35555443
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.15 E-value=0.0006 Score=58.19 Aligned_cols=37 Identities=38% Similarity=0.407 Sum_probs=33.1
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
.+.+|||+||+|.+|...++.....|++|++++++.+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~ 59 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE 59 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHH
Confidence 3457999999999999999999999999999999654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=96.14 E-value=0.0056 Score=48.40 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=42.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC---CchHHHHHHhhhcCCceEEEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVE 176 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~---~~~~~~~~~~~~~~~~v~~~~ 176 (476)
.++|+|.|| |++|-.++..|.+.|.+|+++.|..... ++...+...+.++..+++++.
T Consensus 21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~ 81 (116)
T d1gesa2 21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHT 81 (116)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEEC
T ss_pred CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEe
Confidence 368999997 9999999999999999999999987543 333334434444444555543
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.13 E-value=0.0066 Score=48.41 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=43.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC--CchHHHHHHhhhcCCceEEEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY--DPSLKRARQKLLQKHQVFIVE 176 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~--~~~~~~~~~~~~~~~~v~~~~ 176 (476)
.++|+|.|| |++|-.++..|.+.|.+|+++.|...-. ++...+...+.+...+++++.
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~ 91 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFL 91 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEEC
T ss_pred CCcEEEECC-cHHHHHHHHHhhcccceEEEEeccccccCCCHHHHHHHHHHHHHCCcEEEe
Confidence 478999997 9999999999999999999999876532 344444444445555777654
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.07 E-value=0.0013 Score=56.53 Aligned_cols=76 Identities=18% Similarity=0.167 Sum_probs=49.9
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
.+.+|||+||+|.+|...++.....|++|+++++..+. ..... .-+...+ .|..+.+ ..+.+....+|.
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k-----~~~~~----~lGad~v-i~~~~~~-~~~~l~~~~~~~ 99 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST-----HEYLK----SLGASRV-LPRDEFA-ESRPLEKQVWAG 99 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG-----HHHHH----HHTEEEE-EEGGGSS-SCCSSCCCCEEE
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH-----HHHHH----hhccccc-cccccHH-HHHHHHhhcCCe
Confidence 34589999999999999999999999999999985431 11111 1133333 2332222 233444445799
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
+|++.+.
T Consensus 100 vvD~Vgg 106 (177)
T d1o89a2 100 AIDTVGD 106 (177)
T ss_dssp EEESSCH
T ss_pred eEEEcch
Confidence 9998874
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.05 E-value=0.011 Score=50.53 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=26.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHHC-CCeEEEEe
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLD 149 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~ 149 (476)
+++|.|.||||++|..|++.|..+ ..+|..+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 469999999999999999999997 45665543
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.99 E-value=0.0058 Score=48.19 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=41.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC---CchHHHHHHhhhcCCceEEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIV 175 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~---~~~~~~~~~~~~~~~~v~~~ 175 (476)
.++++|.|| |++|-.++..|.+.|.+|+++.|.+.-. ++...+...+.+...+++++
T Consensus 21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~ 80 (115)
T d1lvla2 21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALH 80 (115)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEE
Confidence 478999997 9999999999999999999999877543 33333343444444455544
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.99 E-value=0.0037 Score=53.98 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=33.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP 157 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~ 157 (476)
-++|.|.|| |.+|+.++..++..|++|++.+++.+..+.
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~ 42 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQ 42 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhh
Confidence 367999998 999999999999999999999996654333
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.91 E-value=0.0054 Score=51.80 Aligned_cols=75 Identities=21% Similarity=0.162 Sum_probs=48.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC-CHHHHHHhhccCCc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN-DAPLLTKLFDVVPF 194 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~-d~~~l~~~~~~~~~ 194 (476)
..+.+|+|.|+ |.+|...++.+...|.+|++++++.++. +..+ +. +...+ .|.. +.+..++..+ .+
T Consensus 26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~----~~a~-~l----Ga~~~-i~~~~~~~~~~~~~~--~~ 92 (168)
T d1piwa2 26 GPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKR----EDAM-KM----GADHY-IATLEEGDWGEKYFD--TF 92 (168)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTH----HHHH-HH----TCSEE-EEGGGTSCHHHHSCS--CE
T ss_pred CCCCEEEEECC-CCcchhHHHHhhhccccccccccchhHH----HHhh-cc----CCcEE-eeccchHHHHHhhhc--cc
Confidence 45679999997 9999999998888999999999865422 1111 11 22211 1322 2333444444 45
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|++|.+.+.
T Consensus 93 d~vi~~~~~ 101 (168)
T d1piwa2 93 DLIVVCASS 101 (168)
T ss_dssp EEEEECCSC
T ss_pred ceEEEEecC
Confidence 999998775
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.024 Score=47.55 Aligned_cols=75 Identities=17% Similarity=0.118 Sum_probs=52.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+.+|+|.|+ |.||...++.+...|++|+++++.++.. + ...+. +... ..|..+.+......+++ |
T Consensus 29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~----~-~a~~l----Gad~-~i~~~~~~~~~~~~~~~--D 95 (168)
T d1uufa2 29 GPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKR----E-AAKAL----GADE-VVNSRNADEMAAHLKSF--D 95 (168)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGH----H-HHHHH----TCSE-EEETTCHHHHHTTTTCE--E
T ss_pred CCCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHH----H-HHhcc----CCcE-EEECchhhHHHHhcCCC--c
Confidence 46789999996 9999999999999999999998754311 1 11111 2222 24666766666555544 9
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
++|.+.|.
T Consensus 96 ~vid~~g~ 103 (168)
T d1uufa2 96 FILNTVAA 103 (168)
T ss_dssp EEEECCSS
T ss_pred eeeeeeec
Confidence 99999985
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.80 E-value=0.018 Score=48.08 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=44.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
|+|-|.|- |.+|..+++.|+++||+|++.+|..+ ..+.+...+.... ++..++++.+ |+||
T Consensus 1 MkIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~---------~~~~~~~~~~~~~-------~~~~e~~~~~--d~ii 61 (161)
T d1vpda2 1 MKVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPE---------AIADVIAAGAETA-------STAKAIAEQC--DVII 61 (161)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHH---------HHHHHHHTTCEEC-------SSHHHHHHHC--SEEE
T ss_pred CEEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcc---------hhHHHHHhhhhhc-------ccHHHHHhCC--CeEE
Confidence 68999985 99999999999999999999998432 1111112233221 2344566666 9999
Q ss_pred Eccc
Q 011841 199 HLAA 202 (476)
Q Consensus 199 ~~Ag 202 (476)
-+..
T Consensus 62 ~~v~ 65 (161)
T d1vpda2 62 TMLP 65 (161)
T ss_dssp ECCS
T ss_pred EEcC
Confidence 8763
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.013 Score=49.56 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=32.6
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
.++|+|||.|+ |+.++.++..|.+.|.+|+++.|..
T Consensus 16 ~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 16 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchH
Confidence 57799999997 9999999999999999999999843
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.74 E-value=0.023 Score=45.45 Aligned_cols=69 Identities=22% Similarity=0.200 Sum_probs=50.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHh-hccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKL-FDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~-~~~~~~d~V 197 (476)
|.|+|.|. |-+|+.+++.| +|++|++++...+. . ......++.++.||.+|++.++++ ++.+ +.+
T Consensus 1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~-----~----~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A--~~v 66 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENV-----R----KKVLRSGANFVHGDPTRVSDLEKANVRGA--RAV 66 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTH-----H----HHHHHTTCEEEESCTTSHHHHHHTTCTTC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHH-----H----HHHHhcCccccccccCCHHHHHHhhhhcC--cEE
Confidence 45889986 88999999999 46778888764331 1 112234899999999999988875 3444 888
Q ss_pred EEcc
Q 011841 198 LHLA 201 (476)
Q Consensus 198 i~~A 201 (476)
|-+.
T Consensus 67 i~~~ 70 (129)
T d2fy8a1 67 IVNL 70 (129)
T ss_dssp EECC
T ss_pred EEec
Confidence 8654
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.71 E-value=0.016 Score=48.64 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=49.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH---HHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~~~ 191 (476)
..+.+|+|+|++|.+|...++.+...|. +|++++++.+ +.+....-+... ..|..+.+. +.+...+
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~---------~~~~~~~~Ga~~-~i~~~~~~~~~~~~~~~~~ 95 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE---------AVEAAKRAGADY-VINASMQDPLAEIRRITES 95 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH---------HHHHHHHHTCSE-EEETTTSCHHHHHHHHTTT
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchh---------hHHHHHHcCCce-eeccCCcCHHHHHHHHhhc
Confidence 3557899999999999999999999884 8888887321 111111112221 224444333 3333334
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
..+|+||+++|.
T Consensus 96 ~~~d~vid~~g~ 107 (170)
T d1jvba2 96 KGVDAVIDLNNS 107 (170)
T ss_dssp SCEEEEEESCCC
T ss_pred ccchhhhccccc
Confidence 468999999985
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.68 E-value=0.012 Score=47.60 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=42.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCC----chHHHHHHhhhcCCceEEE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYD----PSLKRARQKLLQKHQVFIV 175 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~----~~~~~~~~~~~~~~~v~~~ 175 (476)
..++|+|.|| |++|-.++..|.+.|.+|+++.+...... +.......+.++..+++++
T Consensus 34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~ 95 (133)
T d1q1ra2 34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIR 95 (133)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEE
Confidence 4579999997 99999999999999999999999876543 2333333344444455544
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.68 E-value=0.016 Score=49.08 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=31.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
+.+|-|.|- |.+|..+++.|+++||+|++.+|..+
T Consensus 2 ~~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~ 36 (176)
T d2pgda2 2 QADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVS 36 (176)
T ss_dssp CBSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred CCcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence 357899995 99999999999999999999999654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.64 E-value=0.0024 Score=55.51 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=33.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP 157 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~ 157 (476)
++|.|.|| |.+|+.++..++..|++|++.+++.+..+.
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~ 42 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAK 42 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHH
Confidence 69999998 999999999999999999999997654433
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.61 E-value=0.015 Score=46.57 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=42.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC---CCchHHHHHHhhhcCCceEEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---YDPSLKRARQKLLQKHQVFIV 175 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~---~~~~~~~~~~~~~~~~~v~~~ 175 (476)
.++++|.|| |+||-.++..|.+.|.+|+++.+...- .++...+...+.+...++.++
T Consensus 26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~ 85 (125)
T d1ojta2 26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIM 85 (125)
T ss_dssp CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEE
T ss_pred CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccc
Confidence 479999997 999999999999999999999887644 344444444444555555443
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.60 E-value=0.0093 Score=50.99 Aligned_cols=79 Identities=23% Similarity=0.125 Sum_probs=49.4
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhh-cCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLL-QKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~-~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
|+|.|.|+ |-.|..++..|.+.|++|++..|..+. +.......... ...+......++.-.+++.++++++ |+|
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~a--d~I 75 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENA--EVV 75 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTC--SEE
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccH--HHHHHHhhhhhhhhhcchhccccccccccHHHHHhcc--chh
Confidence 78999997 999999999999999999999883321 01111111100 0111111122233345678888887 999
Q ss_pred EEccc
Q 011841 198 LHLAA 202 (476)
Q Consensus 198 i~~Ag 202 (476)
|.+.-
T Consensus 76 i~avp 80 (180)
T d1txga2 76 LLGVS 80 (180)
T ss_dssp EECSC
T ss_pred hcccc
Confidence 88653
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.56 E-value=0.0096 Score=49.91 Aligned_cols=104 Identities=15% Similarity=0.086 Sum_probs=61.5
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHH------HHHhhhcCCceEEEEeecCCHHHHHHhhcc
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKR------ARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~------~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
+++|.|.| .|.+|..+++.|+++||+|++.+|+....+..... ...+.. ....++..-+.+.+.++.++..
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~--~~~diii~~v~~~~~~~~v~~~ 77 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAV--QGADVVISMLPASQHVEGLYLD 77 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHH--TSCSEEEECCSCHHHHHHHHHS
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhc--cccCeeeecccchhhHHHHHhc
Confidence 36899998 59999999999999999999999853211100000 000111 1233444445566666655432
Q ss_pred C--------CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEE
Q 011841 192 V--------PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVW 242 (476)
Q Consensus 192 ~--------~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~ 242 (476)
. +=++||++... ....+..+.+.+++.|. +|+-
T Consensus 78 ~~~~~~~l~~g~iiid~st~----------------~p~~~~~~~~~~~~~gi--~~~d 118 (162)
T d3cuma2 78 DDGLLAHIAPGTLVLECSTI----------------APTSARKIHAAARERGL--AMLD 118 (162)
T ss_dssp TTCHHHHSCTTCEEEECSCC----------------CHHHHHHHHHHHHHTTC--EEEE
T ss_pred cccccccCCCCCEEEECCCC----------------CHHHHHHHHHHHHHCCC--cEEe
Confidence 1 12577776654 12234567777888775 5664
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.44 E-value=0.01 Score=47.35 Aligned_cols=57 Identities=19% Similarity=0.304 Sum_probs=41.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC---CchHHHHHHhhhcCCceEEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIV 175 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~---~~~~~~~~~~~~~~~~v~~~ 175 (476)
.++++|.|| |+||-.++..|.+.|.+|+++.|..... ++.......+.++..+++++
T Consensus 25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~ 84 (123)
T d1dxla2 25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFK 84 (123)
T ss_dssp CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEE
T ss_pred CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEE
Confidence 478999997 9999999999999999999999877543 33333333344444444443
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.40 E-value=0.044 Score=43.94 Aligned_cols=115 Identities=17% Similarity=0.151 Sum_probs=71.7
Q ss_pred CCCCEEEEECCC---ChhhHHHHHHHHHCC-CeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhcc
Q 011841 116 PNGMTVLVTGAA---GFVGSHCSLALKKRG-DGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGat---G~IG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~ 191 (476)
.+.++|.|.||+ +..|..+.+.|.+.| ++|+.+....+. -.++.++ -++.| +-+
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~--------------i~G~~~y-~sl~d------lp~- 63 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE--------------VQGVKAY-KSVKD------IPD- 63 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE--------------ETTEECB-SSTTS------CSS-
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc--------------cCCeEee-cchhh------cCC-
Confidence 466899999998 899999999998766 688888642210 0122222 13333 222
Q ss_pred CCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccCCCCCCCCCCCCCCCCCCChHH
Q 011841 192 VPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYGLNTQVPFSESHRTDQPASLYA 271 (476)
Q Consensus 192 ~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~p~~~Y~ 271 (476)
.+|.++-+... ..+..+++.|.+.|++ .++.+|+... |. .
T Consensus 64 -~vDlvvi~vp~------------------~~~~~~~~~~~~~g~~-~~vi~s~Gf~----------e~-------~--- 103 (129)
T d2csua1 64 -EIDLAIIVVPK------------------RFVKDTLIQCGEKGVK-GVVIITAGFG----------ET-------G--- 103 (129)
T ss_dssp -CCSEEEECSCH------------------HHHHHHHHHHHHHTCC-EEEECCCSST----------TS-------C---
T ss_pred -CCceEEEecCh------------------HHhHHHHHHHHHcCCC-EEEEeccccc----------cc-------c---
Confidence 46988876532 2345788889999986 7787776431 11 1
Q ss_pred HHHHHHHHHHHHHHHHhCCcE
Q 011841 272 ATKKAGEEIAHTYNHIYGLAL 292 (476)
Q Consensus 272 ~sK~~~E~~~~~~~~~~gi~~ 292 (476)
......|+.+.+.++++|+++
T Consensus 104 ~~~~~~~~~l~~~a~~~girv 124 (129)
T d2csua1 104 EEGKREEKELVEIAHKYGMRI 124 (129)
T ss_dssp HHHHHHHHHHHHHHHHHTCEE
T ss_pred hhhHHHHHHHHHHHHHcCCEE
Confidence 123444555666677778754
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.34 E-value=0.025 Score=44.50 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=40.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC---CCchHHHHHHhhhcCCceE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY---YDPSLKRARQKLLQKHQVF 173 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~---~~~~~~~~~~~~~~~~~v~ 173 (476)
.+++|+|.|| |+||-.++..|.+.|.+|+++.|.... .++.......+.+...+++
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~ 79 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGME 79 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccE
Confidence 4689999997 999999999999999999999997654 3333344444444433443
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.34 E-value=0.045 Score=44.93 Aligned_cols=34 Identities=26% Similarity=0.192 Sum_probs=30.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
|+|.|.|. |.+|+.+++.|+++|++|++.++..+
T Consensus 1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~ 34 (152)
T d1i36a2 1 LRVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRS 34 (152)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCEEEECCTTCC
T ss_pred CEEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchh
Confidence 78999985 99999999999999999999887544
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.28 E-value=0.034 Score=46.91 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=46.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEE-eCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHH---HHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGL-DNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPL---LTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~-~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~---l~~~~~~ 191 (476)
..+.+|+|.|+ |.||...++.+...|.+++++ ++.+ .+.+...++ . -.+++ |..+++. +.++..+
T Consensus 27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~-----~k~~~a~~~-G--a~~~i--~~~~~~~~~~i~~~t~g 95 (174)
T d1f8fa2 27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVE-----SRLELAKQL-G--ATHVI--NSKTQDPVAAIKEITDG 95 (174)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCH-----HHHHHHHHH-T--CSEEE--ETTTSCHHHHHHHHTTS
T ss_pred CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHH-----HHHHHHHHc-C--CeEEE--eCCCcCHHHHHHHHcCC
Confidence 45678999997 999999999999999866554 4421 111111111 1 12333 4444333 3334333
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
++|+||.+.|.
T Consensus 96 -g~D~vid~~G~ 106 (174)
T d1f8fa2 96 -GVNFALESTGS 106 (174)
T ss_dssp -CEEEEEECSCC
T ss_pred -CCcEEEEcCCc
Confidence 68999999985
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.21 E-value=0.073 Score=44.89 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=51.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCC-HHHHHHhhccCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLND-APLLTKLFDVVP 193 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d-~~~l~~~~~~~~ 193 (476)
..+.+|+|+|+ |.+|...++.+...|. +|+++++++++. +...++-. ...+-.-|-.+ .+.+.+...+..
T Consensus 28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl-----~~Ak~~GA--~~~in~~~~~~~~~~~~~~~~g~G 99 (176)
T d1d1ta2 28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKF-----EKAMAVGA--TECISPKDSTKPISEVLSEMTGNN 99 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH-----HHHHHHTC--SEEECGGGCSSCHHHHHHHHHTSC
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHH-----HHHHhcCC--cEEECccccchHHHHHHHHhcccc
Confidence 46679999986 9999999999999995 799999855421 11111111 11111112221 334555555667
Q ss_pred ccEEEEcccc
Q 011841 194 FTHVLHLAAQ 203 (476)
Q Consensus 194 ~d~Vi~~Ag~ 203 (476)
+|++|.+.|.
T Consensus 100 ~d~vi~~~g~ 109 (176)
T d1d1ta2 100 VGYTFEVIGH 109 (176)
T ss_dssp CCEEEECSCC
T ss_pred ceEEEEeCCc
Confidence 8999999986
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=95.06 E-value=0.048 Score=46.56 Aligned_cols=38 Identities=16% Similarity=0.067 Sum_probs=31.6
Q ss_pred CCCEEEE-ECCCChhhHHHHHHHHHCCCeEEEEeCCCCC
Q 011841 117 NGMTVLV-TGAAGFVGSHCSLALKKRGDGVLGLDNFNSY 154 (476)
Q Consensus 117 ~~~~VLV-tGatG~IG~~l~~~L~~~G~~V~~~~R~~~~ 154 (476)
.+.+|+| +||+|.+|...++.....|.+|++++|..+.
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~ 66 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN 66 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccc
Confidence 4455666 6999999999999999999999999986553
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.91 E-value=0.06 Score=43.44 Aligned_cols=74 Identities=20% Similarity=0.112 Sum_probs=49.1
Q ss_pred EEEEECCCChhhHHHHHHHHHC-CCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEEE
Q 011841 120 TVLVTGAAGFVGSHCSLALKKR-GDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHVL 198 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi 198 (476)
||.|.|++|-+|+.+++.+.+. ++++.+..- ..+. +. .+...++|+||
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d----------------------------~~~~--~~-~~~~~~~DvvI 49 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELD----------------------------AGDP--LS-LLTDGNTEVVI 49 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEEC----------------------------TTCC--TH-HHHTTTCSEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe----------------------------cCCc--hh-hhccccCCEEE
Confidence 6899999999999999998775 566655431 1111 11 11223569999
Q ss_pred EccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 199 HLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 199 ~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
++.-+.. +...++.|.+.+.. +|.-+
T Consensus 50 DFS~p~~------------------~~~~~~~~~~~~~~--~ViGT 75 (135)
T d1yl7a1 50 DFTHPDV------------------VMGNLEFLIDNGIH--AVVGT 75 (135)
T ss_dssp ECCCTTT------------------HHHHHHHHHHTTCE--EEECC
T ss_pred EcccHHH------------------HHHHHHHHHhcCCC--EEEec
Confidence 9875522 45778889999974 55433
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.83 E-value=0.13 Score=43.29 Aligned_cols=78 Identities=18% Similarity=0.123 Sum_probs=49.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceE-EEEeecCC--HHHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVF-IVEGDLND--APLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~-~~~~Dl~d--~~~l~~~~~~ 191 (476)
..+.+|+|.|+ |.||...++.+...|. .|++.+++++ +.+...++ +.. ++...-.| .+.+.+...+
T Consensus 27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~-----r~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (174)
T d1e3ia2 27 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGE-----KFPKAKAL----GATDCLNPRELDKPVQDVITELTA 96 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG-----GHHHHHHT----TCSEEECGGGCSSCHHHHHHHHHT
T ss_pred CCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchH-----HHHHHHHh----CCCcccCCccchhhhhhhHhhhhc
Confidence 45679999986 9999999999999998 5777776332 11122221 222 22211112 2334444455
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
..+|+||.+.|.
T Consensus 97 ~G~d~vie~~G~ 108 (174)
T d1e3ia2 97 GGVDYSLDCAGT 108 (174)
T ss_dssp SCBSEEEESSCC
T ss_pred CCCcEEEEeccc
Confidence 578999999986
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=94.77 E-value=0.041 Score=46.35 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=49.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
.++++|+|.|+ |..++.++..|.+.+.+|+++.|..+ ..+...........+.....|-. .+. .+|
T Consensus 16 ~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~----~a~~l~~~~~~~~~~~~~~~~~~-------~~~--~~d 81 (171)
T d1p77a1 16 RPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFS----KTKELAERFQPYGNIQAVSMDSI-------PLQ--TYD 81 (171)
T ss_dssp CTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHH----HHHHHHHHHGGGSCEEEEEGGGC-------CCS--CCS
T ss_pred CCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHH----HHHHHHHHHhhccccchhhhccc-------ccc--ccc
Confidence 57789999996 88999999999998899999999542 12222222222334444443321 122 459
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+|||+...
T Consensus 82 iiIN~tp~ 89 (171)
T d1p77a1 82 LVINATSA 89 (171)
T ss_dssp EEEECCCC
T ss_pred eeeecccc
Confidence 99999764
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.69 E-value=0.018 Score=49.35 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=28.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC-CeEEEEe
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLD 149 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~ 149 (476)
.+..+|.|.||||++|+.+++.|.++- .++..+.
T Consensus 3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 456799999999999999999999874 4665554
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.69 E-value=0.02 Score=50.68 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=32.7
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
+.+.++|+|+|| |..|-..|..|.++|++|+++.|.
T Consensus 3 ~~~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 3 MHSQKRVVVLGS-GVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCC
Confidence 356679999997 999999999999999999999984
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=94.65 E-value=0.035 Score=47.37 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=44.1
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN 180 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~ 180 (476)
...+++|.|.|. |-||+.+++.|..-|.+|++.+|..............+.+....+.++-+-++
T Consensus 39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~~~~~~~~~~l~ell~~sDiv~~~~pl~ 103 (181)
T d1qp8a1 39 LIQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLN 103 (181)
T ss_dssp CCTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCCCSSSCCBSCSHHHHTTCSEEEECCCCS
T ss_pred cccCceEEEecc-ccccccceeeeeccccccccccccccccceeeeechhhhhhccchhhcccccc
Confidence 367899999996 99999999999999999999999764432211111223333345555555443
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=94.63 E-value=0.15 Score=37.87 Aligned_cols=68 Identities=22% Similarity=0.218 Sum_probs=45.5
Q ss_pred CEEEEECCCChhhH-HHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 119 MTVLVTGAAGFVGS-HCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~-~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
|+|-++|- |.+|- .||+.|+++|++|.+.|+... .....++..++.+..+. +++. +++. |.|
T Consensus 2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~--------~~t~~L~~~Gi~i~~gh--~~~~----i~~~--d~v 64 (89)
T d1j6ua1 2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEET--------ERTAYLRKLGIPIFVPH--SADN----WYDP--DLV 64 (89)
T ss_dssp CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCC--------HHHHHHHHTTCCEESSC--CTTS----CCCC--SEE
T ss_pred cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCC--------hhHHHHHHCCCeEEeee--cccc----cCCC--CEE
Confidence 78888886 44443 789999999999999998542 12223445577765542 2222 2344 999
Q ss_pred EEcccc
Q 011841 198 LHLAAQ 203 (476)
Q Consensus 198 i~~Ag~ 203 (476)
|.-.+.
T Consensus 65 V~SsAI 70 (89)
T d1j6ua1 65 IKTPAV 70 (89)
T ss_dssp EECTTC
T ss_pred EEecCc
Confidence 998886
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.2 Score=44.32 Aligned_cols=112 Identities=20% Similarity=0.151 Sum_probs=67.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCC---------C-----CchHHHHHHhhhc--CCceEEEEeec
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY---------Y-----DPSLKRARQKLLQ--KHQVFIVEGDL 179 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~---------~-----~~~~~~~~~~~~~--~~~v~~~~~Dl 179 (476)
+..+|+|.|+ |.+|.+++..|+..|. +++++|.+.=. + -..+.....+.+. .+.+.+...+.
T Consensus 29 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~ 107 (247)
T d1jw9b_ 29 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA 107 (247)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred hCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence 4579999996 9999999999999997 56666633211 0 0111111111111 34555555543
Q ss_pred C-CHHHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 180 N-DAPLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 180 ~-d~~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
. +.+.....+... |+||.+... ...-..+-++|.+.+.+ +|+.+....+|
T Consensus 108 ~~~~~~~~~~~~~~--divid~~d~-----------------~~~~~~in~~~~~~~ip--~i~g~~~~~~g 158 (247)
T d1jw9b_ 108 LLDDAELAALIAEH--DLVLDCTDN-----------------VAVRNQLNAGCFAAKVP--LVSGAAIRMEG 158 (247)
T ss_dssp CCCHHHHHHHHHTS--SEEEECCSS-----------------HHHHHHHHHHHHHHTCC--EEEEEEEBTEE
T ss_pred hhhhcccccccccc--ceeeeccch-----------------hhhhhhHHHHHHHhCCC--ccccccccccc
Confidence 2 345556666666 999987632 23334566778888874 77766555444
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.31 E-value=0.028 Score=47.15 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=55.4
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~ 196 (476)
..-+|+|.|| |..|..-++.....|.+|+++|.+.+ .++...... ...++.. ..+.+.+++.++.+ |+
T Consensus 31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~----~l~~l~~~~--~~~~~~~---~~~~~~l~~~~~~a--Di 98 (168)
T d1pjca1 31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVE----RLSYLETLF--GSRVELL---YSNSAEIETAVAEA--DL 98 (168)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHHHH--GGGSEEE---ECCHHHHHHHHHTC--SE
T ss_pred CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHH----HHHHHHHhh--cccceee---hhhhhhHHHhhccC--cE
Confidence 4468999997 99999999999999999999998432 111122111 1234443 45678889999988 99
Q ss_pred EEEccccC
Q 011841 197 VLHLAAQA 204 (476)
Q Consensus 197 Vi~~Ag~~ 204 (476)
||..+-..
T Consensus 99 vI~aalip 106 (168)
T d1pjca1 99 LIGAVLVP 106 (168)
T ss_dssp EEECCCCT
T ss_pred EEEeeecC
Confidence 99998653
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.30 E-value=0.076 Score=44.43 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=47.4
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccCCc
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPF 194 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~ 194 (476)
.+.+|+|.|+ |.+|...++.+...|. .|++++++++ +.+... ....+++..+=.+.+.+.+...+..+
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~---------k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~ 101 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEE---------KLKLAERLGADHVVDARRDPVKQVMELTRGRGV 101 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHH---------HHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhH---------HHHHHhhcccceeecCcccHHHHHHHhhCCCCc
Confidence 4678999986 9999999999988886 5666666321 111111 11223333221223344455555578
Q ss_pred cEEEEcccc
Q 011841 195 THVLHLAAQ 203 (476)
Q Consensus 195 d~Vi~~Ag~ 203 (476)
|+||.++|.
T Consensus 102 d~vid~~g~ 110 (172)
T d1h2ba2 102 NVAMDFVGS 110 (172)
T ss_dssp EEEEESSCC
T ss_pred eEEEEecCc
Confidence 999999985
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.059 Score=44.86 Aligned_cols=70 Identities=19% Similarity=0.141 Sum_probs=49.4
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
.+..+|+|.|.| .|.||+.+++.|...|.+|++.++.. -+..+... .+.++. .+++++...
T Consensus 20 ~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp-------~~al~A~~--dG~~v~--------~~~~a~~~a- 80 (163)
T d1li4a1 20 VMIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDP-------INALQAAM--EGYEVT--------TMDEACQEG- 80 (163)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH-------HHHHHHHH--TTCEEC--------CHHHHTTTC-
T ss_pred ceecCCEEEEec-cccccHHHHHHHHhCCCeeEeeeccc-------chhHHhhc--CceEee--------ehhhhhhhc-
Confidence 347899999999 79999999999999999999998722 11222221 133322 245666666
Q ss_pred ccEEEEcccc
Q 011841 194 FTHVLHLAAQ 203 (476)
Q Consensus 194 ~d~Vi~~Ag~ 203 (476)
|+||-+.|.
T Consensus 81 -divvtaTGn 89 (163)
T d1li4a1 81 -NIFVTTTGC 89 (163)
T ss_dssp -SEEEECSSC
T ss_pred -cEEEecCCC
Confidence 888888875
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.24 E-value=0.018 Score=47.77 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.8
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD 143 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~ 143 (476)
+|.|.||||++|..+++.|.++.+
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCS
T ss_pred EEEEECCCcHHHHHHHHHHHcCCC
Confidence 799999999999999999988754
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=94.12 E-value=0.012 Score=49.44 Aligned_cols=97 Identities=20% Similarity=0.205 Sum_probs=56.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEe-CCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhhccC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLD-NFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~-R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
+.++|.|.|++|-+|+.|++.+.+. +.++++.. |........ ....... ..++.+ .-| ++.+++.+
T Consensus 3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~---d~~~~~~~~~~~~~~-~~~------~~~~~~~~ 72 (162)
T d1diha1 3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DAGELAGAGKTGVTV-QSS------LDAVKDDF 72 (162)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CTTCSSSSSCCSCCE-ESC------STTTTTSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccc---hhhhhhccccCCcee-ecc------HHHHhccc
Confidence 4579999999999999999999886 55655443 322211000 0000000 111111 112 23355544
Q ss_pred CccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecC
Q 011841 193 PFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASS 245 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS 245 (476)
|+||...-+ .++...+++|.+.++. +|.-+|
T Consensus 73 --DViIDFs~p------------------~~~~~~~~~a~~~~~~--~ViGTT 103 (162)
T d1diha1 73 --DVFIDFTRP------------------EGTLNHLAFCRQHGKG--MVIGTT 103 (162)
T ss_dssp --SEEEECSCH------------------HHHHHHHHHHHHTTCE--EEECCC
T ss_pred --ceEEEeccH------------------HHHHHHHHHHHhccce--eEEecC
Confidence 999998632 3456788899999874 664443
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.01 E-value=0.018 Score=48.87 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=30.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
.++++|||.|+ |+.++.++..|.+.| +|+++.|..+
T Consensus 16 ~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ 51 (177)
T d1nvta1 16 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVE 51 (177)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhh
Confidence 57899999996 889999999998777 8999999543
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.00 E-value=0.11 Score=43.57 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=66.4
Q ss_pred CCEEEEECCCChhhHH--HHHHHHHC----CCeEEEEeCCCCCCCchHHHHHHhhhc--CCceEEEEeecCCHHHHHHhh
Q 011841 118 GMTVLVTGAAGFVGSH--CSLALKKR----GDGVLGLDNFNSYYDPSLKRARQKLLQ--KHQVFIVEGDLNDAPLLTKLF 189 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~--l~~~L~~~----G~~V~~~~R~~~~~~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~ 189 (476)
.|+|.|.|| |.+|.. ++..|+.. +.++++.|++.+....... ...+... ....++... .+.++++
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~-~~~~~~~~~~~~~~i~~~-----td~~eaL 74 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILT-IAKKYVEEVGADLKFEKT-----MNLDDVI 74 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHH-HHHHHHHHTTCCCEEEEE-----SCHHHHH
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHH-HHHHHHHhcCCCeEEEEe-----CChhhcc
Confidence 479999997 888865 34445433 4699999985432211111 1111111 123333321 2255677
Q ss_pred ccCCccEEEEccccCChhhhhcChHH------------------------HHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 190 DVVPFTHVLHLAAQAGVRYAMQNPQS------------------------YVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~~~~~~~~~~~~~------------------------~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
+++ |+||+.++.........+..- ...-|+.-...+++.+++......++.+|
T Consensus 75 ~da--d~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T 151 (171)
T d1obba1 75 IDA--DFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA 151 (171)
T ss_dssp TTC--SEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cCC--CeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence 888 999999876432211110000 01247777888888888888765677665
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.91 E-value=0.12 Score=43.26 Aligned_cols=78 Identities=15% Similarity=0.144 Sum_probs=48.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEE--eecCC-HHHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVE--GDLND-APLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~--~Dl~d-~~~l~~~~~~ 191 (476)
..+.+|+|.|+ |.+|...+..+...|. +|+++++++++ .+...+. +..... .|-.| .+.+.+...+
T Consensus 27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k-----~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~~~ 96 (176)
T d2jhfa2 27 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDK-----FAKAKEV----GATECVNPQDYKKPIQEVLTEMSN 96 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG-----HHHHHHT----TCSEEECGGGCSSCHHHHHHHHTT
T ss_pred CCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHH-----HHHHHHh----CCeeEEecCCchhHHHHHHHHHhc
Confidence 46789999999 7799999999999984 78888874431 1111111 222111 12212 2333344444
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
..+|++|.+.|.
T Consensus 97 ~G~D~vid~~G~ 108 (176)
T d2jhfa2 97 GGVDFSFEVIGR 108 (176)
T ss_dssp SCBSEEEECSCC
T ss_pred CCCCEEEecCCc
Confidence 467999999986
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.91 E-value=0.15 Score=42.30 Aligned_cols=32 Identities=31% Similarity=0.591 Sum_probs=28.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNF 151 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~ 151 (476)
|+|+|.|. |.+|..+++.|.+.|+ +|++.+|+
T Consensus 2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~ 35 (171)
T d2g5ca2 2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDIN 35 (171)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 57999985 9999999999999996 78888873
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.86 E-value=0.12 Score=42.77 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNF 151 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~ 151 (476)
..+.+|+|.|+ |.||...++.+...|++|++++++
T Consensus 26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 26 RPGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCEEEEeec-cccHHHHHHHHHHcCCccceecch
Confidence 35679999986 999999999999999999999983
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=93.86 E-value=0.036 Score=46.53 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=30.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~ 152 (476)
.+++|+|.|+ |+.|+.++..|.+.|. +|+++.|+.
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccH
Confidence 4578999997 9999999999999996 799998843
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=93.57 E-value=0.067 Score=41.81 Aligned_cols=59 Identities=19% Similarity=0.173 Sum_probs=41.4
Q ss_pred CCEEEEECCCChhhHHHHHHHHHC---CCeEEEEeCCCCCC---CchHHHHHHhhhcCCceEEEEe
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKR---GDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVEG 177 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~---G~~V~~~~R~~~~~---~~~~~~~~~~~~~~~~v~~~~~ 177 (476)
.++++|.|| |++|-.++..|.+. |.+|+++.|.+.-. ++.......+.++..+++++..
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~ 84 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTK 84 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEES
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcC
Confidence 478999997 99999999776654 56899999877544 3344444455555556666654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.53 E-value=0.036 Score=45.70 Aligned_cols=33 Identities=18% Similarity=0.146 Sum_probs=30.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
|+|.+.|+ |-+|+.+++.|++.|++|++.+|+.
T Consensus 1 MkIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~ 33 (152)
T d2ahra2 1 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSSL 33 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred CEEEEEec-cHHHHHHHHHHHhCCCeEEEEcChH
Confidence 78999985 9999999999999999999999854
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=93.50 E-value=0.1 Score=40.53 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=41.7
Q ss_pred CCEEEEECCCChhhHHHHHHHHH---CCCeEEEEeCCCCCC---CchHHHHHHhhhcCCceEEEE
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKK---RGDGVLGLDNFNSYY---DPSLKRARQKLLQKHQVFIVE 176 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~---~G~~V~~~~R~~~~~---~~~~~~~~~~~~~~~~v~~~~ 176 (476)
.++++|.|| |++|-.++..|.+ .|.+|+++.|...-. ++.......+.+...+++++.
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~ 81 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRT 81 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEE
T ss_pred CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEc
Confidence 478999997 9999999987655 488999999977543 344444455555555666654
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=93.46 E-value=0.097 Score=43.37 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=51.7
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCC
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVP 193 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~ 193 (476)
-+..+|+|+|.| -|.+|+-++++|...|.+|+++.++ + -+..+.. ..+.++.. ++++++..
T Consensus 19 ~~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~D-----P--i~alqA~--mdGf~v~~--------~~~a~~~a- 79 (163)
T d1v8ba1 19 FLISGKIVVICG-YGDVGKGCASSMKGLGARVYITEID-----P--ICAIQAV--MEGFNVVT--------LDEIVDKG- 79 (163)
T ss_dssp CCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSC-----H--HHHHHHH--TTTCEECC--------HHHHTTTC-
T ss_pred ceecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecC-----c--hhhHHHH--hcCCccCc--------hhHccccC-
Confidence 347899999999 6999999999999999999999862 2 1222222 23444433 45677766
Q ss_pred ccEEEEccccCC
Q 011841 194 FTHVLHLAAQAG 205 (476)
Q Consensus 194 ~d~Vi~~Ag~~~ 205 (476)
|++|-..|..+
T Consensus 80 -Di~vTaTGn~~ 90 (163)
T d1v8ba1 80 -DFFITCTGNVD 90 (163)
T ss_dssp -SEEEECCSSSS
T ss_pred -cEEEEcCCCCc
Confidence 99998888643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.45 E-value=0.12 Score=44.32 Aligned_cols=77 Identities=21% Similarity=0.138 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCH---HHHHHhhcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDA---PLLTKLFDV 191 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~---~~l~~~~~~ 191 (476)
..+.+|||.|+ |.||...+..+...|. +|+++++..+ +.+....-+...+. |-.+. +.+.++..+
T Consensus 24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~---------rl~~a~~~Ga~~~~-~~~~~~~~~~i~~~t~g 92 (195)
T d1kola2 24 GPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPA---------RLAHAKAQGFEIAD-LSLDTPLHEQIAALLGE 92 (195)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH---------HHHHHHHTTCEEEE-TTSSSCHHHHHHHHHSS
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccch---------hhHhhhhccccEEE-eCCCcCHHHHHHHHhCC
Confidence 46779999986 9999888888888887 6777776221 22222222444332 32222 345556666
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
..+|++|.+.|.
T Consensus 93 ~g~D~vid~vG~ 104 (195)
T d1kola2 93 PEVDCAVDAVGF 104 (195)
T ss_dssp SCEEEEEECCCT
T ss_pred CCcEEEEECccc
Confidence 678999999985
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.39 E-value=0.12 Score=43.11 Aligned_cols=79 Identities=14% Similarity=0.072 Sum_probs=45.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCCCCCCchHHHHHHhhhcCCceEEEEe-e-cCCHHHHHHhhccC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEG-D-LNDAPLLTKLFDVV 192 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~-D-l~d~~~l~~~~~~~ 192 (476)
..+.+|+|.|+ |.+|...++.+...|.. |++++++.+ +.+...++-. .+++.. + -.+.+...+...+.
T Consensus 27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~-----k~~~ak~lGa---~~~i~~~~~~~~~~~~~~~~~~~ 97 (176)
T d2fzwa2 27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKD-----KFARAKEFGA---TECINPQDFSKPIQEVLIEMTDG 97 (176)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG-----GHHHHHHHTC---SEEECGGGCSSCHHHHHHHHTTS
T ss_pred CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHH-----HHHHHHHhCC---cEEEeCCchhhHHHHHHHHHcCC
Confidence 45679999998 68999999999999965 555554222 1112222211 112211 1 11222233333344
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
.+|+||.+.|.
T Consensus 98 g~D~vid~~G~ 108 (176)
T d2fzwa2 98 GVDYSFECIGN 108 (176)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEeeecCCC
Confidence 67999999985
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=93.15 E-value=0.3 Score=40.68 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=30.1
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
|+|-|.| .|.+|..+++.|++.||+|++.+|+.
T Consensus 2 MkIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~ 34 (178)
T d1pgja2 2 MDVGVVG-LGVMGANLALNIAEKGFKVAVFNRTY 34 (178)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CEEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCH
Confidence 6799998 59999999999999999999999844
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.10 E-value=0.12 Score=42.59 Aligned_cols=33 Identities=27% Similarity=0.254 Sum_probs=29.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
.+.+|+|.|+ |.||...++.+...|++|+++++
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~ 59 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDI 59 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECS
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCC
Confidence 4678999976 99999999999999999999987
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.12 Score=41.51 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=41.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHH----HCCCeEEEEeCCCCCC----CchHHHHHHhhhcCCceEEE
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALK----KRGDGVLGLDNFNSYY----DPSLKRARQKLLQKHQVFIV 175 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~----~~G~~V~~~~R~~~~~----~~~~~~~~~~~~~~~~v~~~ 175 (476)
..++++|.|| |++|-.++..|. +.|.+|+++.+.+... ++.......+.+...+++++
T Consensus 36 ~~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~ 101 (137)
T d1m6ia2 36 EVKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM 101 (137)
T ss_dssp HCSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred cCCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 3578999997 999999999985 3589999999877543 33344444455555566654
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.93 E-value=0.036 Score=45.49 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=31.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
.++|+|||+|| |.+|..-++.|++.|.+|+++..
T Consensus 11 l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 11 LKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred eCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 67899999998 99999999999999999999964
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=92.64 E-value=0.079 Score=44.77 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=27.1
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCC-CeEEEEeC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDN 150 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R 150 (476)
+++|.|.||||++|..+++.|.+.- .++..+.-
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s 34 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSS 34 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEEC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeec
Confidence 4689999999999999999998864 46666653
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=92.58 E-value=0.094 Score=44.43 Aligned_cols=38 Identities=24% Similarity=0.287 Sum_probs=34.2
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
...+|+|+|.|| |..|-..+..|.++||+|+++.+...
T Consensus 40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 40 AVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccCc
Confidence 356789999997 99999999999999999999998654
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=92.53 E-value=0.087 Score=46.56 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=32.3
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
..++|+|+|| |..|-.++..|.++|++|+++.|...
T Consensus 3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4578999997 99999999999999999999998543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.45 E-value=0.057 Score=45.65 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=31.6
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNS 153 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~ 153 (476)
.++||+|.|| |..|-..|..|.++|+ +|+++.|...
T Consensus 3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 3 YSAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GGCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 3579999997 9999999999999998 5999998553
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=92.45 E-value=0.53 Score=39.02 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=62.0
Q ss_pred CCEEEEECCCChhhHH-HHHHHHHC-----CCeEEEEeCCCCCCCchHHHHHHhh-hcCCceEEEEeecCCHHHHHHhhc
Q 011841 118 GMTVLVTGAAGFVGSH-CSLALKKR-----GDGVLGLDNFNSYYDPSLKRARQKL-LQKHQVFIVEGDLNDAPLLTKLFD 190 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~-l~~~L~~~-----G~~V~~~~R~~~~~~~~~~~~~~~~-~~~~~v~~~~~Dl~d~~~l~~~~~ 190 (476)
..+|.|.|| |.+|.. ++..|+.. +.+|++.|.+.+............. .......+... .+.+++++
T Consensus 3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~eal~ 76 (167)
T d1u8xx1 3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAFT 76 (167)
T ss_dssp CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHHS
T ss_pred CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-----CChhhccC
Confidence 458999998 555654 44455543 2489999985443211111111111 01123333321 12566788
Q ss_pred cCCccEEEEccccCChhhhhcChHHHH--------------------HHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 191 VVPFTHVLHLAAQAGVRYAMQNPQSYV--------------------ASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~~~~~~~~~~~~~~~--------------------~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
++ |+||..||...... ...++.+ .-|+.-...+++..++......++.+|
T Consensus 77 ~A--D~Vvitag~~~~~g--~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~T 146 (167)
T d1u8xx1 77 DV--DFVMAHIRVGKYAM--RALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYS 146 (167)
T ss_dssp SC--SEEEECCCTTHHHH--HHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred CC--CEEEECCCcCCCCc--eeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 88 99999998733221 1111121 134555667777777777665677666
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.39 E-value=0.11 Score=45.55 Aligned_cols=40 Identities=30% Similarity=0.311 Sum_probs=35.1
Q ss_pred CCCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCC
Q 011841 114 RRPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSY 154 (476)
Q Consensus 114 ~~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~ 154 (476)
+....++|+|.|| |..|-..+..|.++|++|+++.+....
T Consensus 45 ~~~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 45 QTKNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp CCSSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred cccCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecccc
Confidence 3457789999997 999999999999999999999986643
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=92.26 E-value=0.13 Score=42.75 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=32.8
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
..+|+|+|.|-+..+|+-++..|.++|+.|+.+..
T Consensus 35 l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~ 69 (166)
T d1b0aa1 35 TFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHR 69 (166)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred cccceEEEEeccccccHHHHHHHHHhhcccccccc
Confidence 68899999999999999999999999999998875
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.22 E-value=0.28 Score=40.98 Aligned_cols=77 Identities=17% Similarity=0.074 Sum_probs=48.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecC--C--HHHHHHhhc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLN--D--APLLTKLFD 190 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~--d--~~~l~~~~~ 190 (476)
..+.+|+|.|+ |.+|...++.+...|. +|+++++++++ .+...++ +...+ .|.. | .+.+.+...
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~k-----l~~a~~l----Ga~~~-i~~~~~d~~~~~~~~~~~ 94 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDK-----FPKAIEL----GATEC-LNPKDYDKPIYEVICEKT 94 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGG-----HHHHHHT----TCSEE-ECGGGCSSCHHHHHHHHT
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHH-----HHHHHHc----CCcEE-EcCCCchhHHHHHHHHhc
Confidence 46679999996 9999999999999996 68888874431 1111111 22222 2322 2 233444444
Q ss_pred cCCccEEEEcccc
Q 011841 191 VVPFTHVLHLAAQ 203 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~ 203 (476)
+-.+|+||.+.|.
T Consensus 95 ~~G~d~vid~~g~ 107 (174)
T d1p0fa2 95 NGGVDYAVECAGR 107 (174)
T ss_dssp TSCBSEEEECSCC
T ss_pred CCCCcEEEEcCCC
Confidence 4467999999985
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=92.15 E-value=0.058 Score=46.54 Aligned_cols=36 Identities=25% Similarity=0.337 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
..+++|.|.| .|.||+.+++.|..-|.+|++.++..
T Consensus 41 l~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~ 76 (197)
T d1j4aa1 41 VRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFR 76 (197)
T ss_dssp GGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred ccCCeEEEec-ccccchhHHHhHhhhcccccccCccc
Confidence 5789999999 59999999999999999999998743
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.98 E-value=0.4 Score=39.83 Aligned_cols=121 Identities=11% Similarity=0.072 Sum_probs=63.9
Q ss_pred CEEEEECC-CChhhHHHHHHHHHC----CCeEEEEeCCCCCCCc-hHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 119 MTVLVTGA-AGFVGSHCSLALKKR----GDGVLGLDNFNSYYDP-SLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 119 ~~VLVtGa-tG~IG~~l~~~L~~~----G~~V~~~~R~~~~~~~-~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
|+|.|.|| +.+.+..++..++.. +.++++.+.+++.... .............+..+....-+| ..+.++++
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td---~~~al~ga 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLD---RRRALDGA 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESC---HHHHHTTC
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCC---chhhcCCC
Confidence 68999997 234445555555443 2488888875431100 000000111111122222233334 34567777
Q ss_pred CccEEEEccccCChhhhhc----------------Ch--HHHHHHHHHHHHHHHHHHHhcCCCCeEEEec
Q 011841 193 PFTHVLHLAAQAGVRYAMQ----------------NP--QSYVASNIAGFVNLLEVCKSVNPQPSIVWAS 244 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~~~~~~~----------------~~--~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~S 244 (476)
|+||..|+......... .+ ......|+.-...+++.+++......++.+|
T Consensus 79 --DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 79 --DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp --SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred --CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 99999998743211100 00 1223457777888888888888765666555
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=91.95 E-value=0.053 Score=46.45 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
..+++|.|.|| |-.|.+++..|.+.|++|++.+|+.
T Consensus 5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 5 LYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp CCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecH
Confidence 45568999997 9999999999999999999999854
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.90 E-value=0.3 Score=47.09 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=49.7
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCC---------C-----CchHHHHHHhhh----cCCceEEEEe
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY---------Y-----DPSLKRARQKLL----QKHQVFIVEG 177 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~---------~-----~~~~~~~~~~~~----~~~~v~~~~~ 177 (476)
+..+|||.|+ |.||.++++.|+..|. +++++|.+.=. + -..+.....+.+ ..-++..+..
T Consensus 36 ~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~ 114 (426)
T d1yovb1 36 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN 114 (426)
T ss_dssp HHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred hcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence 3468999998 7899999999999997 68888753311 1 111112111111 1224555555
Q ss_pred ecCCHHHHHHhhccCCccEEEEccc
Q 011841 178 DLNDAPLLTKLFDVVPFTHVLHLAA 202 (476)
Q Consensus 178 Dl~d~~~l~~~~~~~~~d~Vi~~Ag 202 (476)
++.+.. ..++++. |+||.+.-
T Consensus 115 ~i~~~~--~~~~~~~--DlVi~~~D 135 (426)
T d1yovb1 115 KIQDFN--DTFYRQF--HIIVCGLD 135 (426)
T ss_dssp CGGGBC--HHHHTTC--SEEEECCS
T ss_pred cccchH--HHHHHhc--chheeccC
Confidence 554432 3567766 99998763
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=91.88 E-value=0.034 Score=45.74 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=29.6
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~ 152 (476)
|+|.+.|+ |.+|.++++.|++.| ++|++.+|+.
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 78999997 999999999999887 9999999843
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=91.83 E-value=0.16 Score=43.85 Aligned_cols=35 Identities=34% Similarity=0.471 Sum_probs=32.1
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
..++++|+|-| -|.+|+++++.|.+.|.+|++.+.
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~ 58 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADT 58 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecc
Confidence 46889999999 599999999999999999998876
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.82 E-value=0.079 Score=47.23 Aligned_cols=34 Identities=29% Similarity=0.314 Sum_probs=31.0
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
+|+|+|+|| |.-|-..+.+|.++|++|+++.+..
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 489999997 9999999999999999999998744
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=91.64 E-value=0.094 Score=43.25 Aligned_cols=37 Identities=24% Similarity=0.327 Sum_probs=31.5
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC--eEEEEeCCCCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD--GVLGLDNFNSY 154 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~--~V~~~~R~~~~ 154 (476)
.+|+|+|.|| |++|-.++..|.+.|. +|+++.+....
T Consensus 1 ~gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~~~ 39 (186)
T d1fcda1 1 AGRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNTDY 39 (186)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence 3689999997 9999999999999885 78888876543
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.60 E-value=0.22 Score=41.52 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=33.2
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
..+|+|.|.|-+.-+|+-++..|+++|..|+.+..
T Consensus 37 l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~ 71 (170)
T d1a4ia1 37 IAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHS 71 (170)
T ss_dssp CTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred cccceEEEEecCCccchHHHHHHHhccCceEEEec
Confidence 68999999999999999999999999999999875
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=91.56 E-value=0.23 Score=42.37 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=32.8
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
...+++|.|.|. |.||+.+++.|..-|.+|.+.++..
T Consensus 44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 80 (191)
T d1gdha1 44 KLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHR 80 (191)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred eecccceEEeec-ccchHHHHHHHHhhccccccccccc
Confidence 357899999995 9999999999999999999998744
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=91.33 E-value=0.27 Score=40.19 Aligned_cols=35 Identities=14% Similarity=0.128 Sum_probs=29.2
Q ss_pred CCEEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFN 152 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~ 152 (476)
+|+|.|.|+||.||....+-+.+. .++|.+++=+.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~ 37 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK 37 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 368999999999999999988886 47888887544
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=91.24 E-value=0.11 Score=47.24 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=32.9
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
..+.++|+|+|| |..|-..|..|.++|++|+++.+..
T Consensus 27 ~~~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 27 TSNPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CSSCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 356789999997 9999999999999999999998743
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=91.08 E-value=0.049 Score=46.90 Aligned_cols=38 Identities=37% Similarity=0.381 Sum_probs=33.7
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
...+++|.|.|. |-||+.+++.|..-|.+|++.++...
T Consensus 46 eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 83 (193)
T d1mx3a1 46 RIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLS 83 (193)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred eeeCceEEEecc-ccccccceeeeeccccceeeccCccc
Confidence 368899999995 99999999999999999999998543
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=90.91 E-value=0.069 Score=42.43 Aligned_cols=77 Identities=14% Similarity=0.143 Sum_probs=53.2
Q ss_pred CCCCEEEEECCCC----------hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHH
Q 011841 116 PNGMTVLVTGAAG----------FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLL 185 (476)
Q Consensus 116 ~~~~~VLVtGatG----------~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l 185 (476)
.+.++|||.|+.. +-+.+.+++|.+.|++++++..+.+-.+. +.....+ +...--..+.+
T Consensus 5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVst-------d~d~aD~---lYfePlt~e~v 74 (127)
T d1a9xa3 5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMT-------DPEMADA---TYIEPIHWEVV 74 (127)
T ss_dssp SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGG-------CGGGSSE---EECSCCCHHHH
T ss_pred CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhc-------Chhhcce---eeeecCCHHHH
Confidence 4568999999843 57899999999999999998765542111 1111112 23334457889
Q ss_pred HHhhccCCccEEEEccc
Q 011841 186 TKLFDVVPFTHVLHLAA 202 (476)
Q Consensus 186 ~~~~~~~~~d~Vi~~Ag 202 (476)
.++++..+||.|+--.|
T Consensus 75 ~~Ii~~E~pd~il~~~G 91 (127)
T d1a9xa3 75 RKIIEKERPDAVLPTMG 91 (127)
T ss_dssp HHHHHHHCCSEEECSSS
T ss_pred HHHHHHhCcCCeEEEee
Confidence 99998889999985554
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=90.87 E-value=0.15 Score=43.41 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=47.1
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
..+++|.|.| .|.||+.+++.|..-|.+|+..++....... .. . . .+.++++++.+ |
T Consensus 42 l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-------------~~--~--~---~~~l~ell~~s--D 98 (188)
T d1sc6a1 42 ARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIENKLPLG-------------NA--T--Q---VQHLSDLLNMS--D 98 (188)
T ss_dssp STTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCCT-------------TC--E--E---CSCHHHHHHHC--S
T ss_pred ccceEEEEee-cccchhhhhhhcccccceEeeccccccchhh-------------hh--h--h---hhhHHHHHhhc--c
Confidence 5788999998 5999999999999999999999985432111 11 0 1 12466777777 8
Q ss_pred EEEEcccc
Q 011841 196 HVLHLAAQ 203 (476)
Q Consensus 196 ~Vi~~Ag~ 203 (476)
+|+.+...
T Consensus 99 ii~i~~pl 106 (188)
T d1sc6a1 99 VVSLHVPE 106 (188)
T ss_dssp EEEECCCS
T ss_pred ceeecccC
Confidence 88777654
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=90.85 E-value=0.071 Score=46.05 Aligned_cols=38 Identities=26% Similarity=0.328 Sum_probs=33.5
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
...+++|.|.|. |-||+.+++.|..-|.+|++.++...
T Consensus 42 ~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 79 (199)
T d1dxya1 42 ELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPM 79 (199)
T ss_dssp CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred cccceeeeeeec-ccccccccccccccceeeeccCCccc
Confidence 357899999995 99999999999999999999998543
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.85 E-value=0.12 Score=47.67 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=31.8
Q ss_pred CCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
.|+|+|+|| |.-|-.+|..|.++|++|.++.+.+.
T Consensus 2 ~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 589999997 99999999999999999999987654
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=90.56 E-value=0.099 Score=46.52 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=30.2
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
|+|+|+|| |.-|-..+.+|.++|++|+++.+.+
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 68999997 9999999999999999999998743
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.52 E-value=0.36 Score=40.77 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=32.4
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
...++++.|.|. |.||+.+++.|..-|.+|++.++..
T Consensus 41 ~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~ 77 (184)
T d1ygya1 41 EIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYV 77 (184)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred cccceeeeeccc-cchhHHHHHHhhhccceEEeecCCC
Confidence 357889999995 9999999999999999999998744
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.39 E-value=0.22 Score=41.95 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=31.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
-+|+|.|| |..|.+-++..+..|..|+++|.+.+
T Consensus 30 a~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 30 ARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred cEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 48999997 99999999999999999999998654
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=90.26 E-value=0.12 Score=46.05 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=29.4
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
.|+|+|| |.+|..++.+|+++|++|+++++..
T Consensus 6 DvvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGG-GIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4999997 9999999999999999999999843
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.99 E-value=0.099 Score=45.20 Aligned_cols=83 Identities=10% Similarity=0.071 Sum_probs=49.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCC-CchHHHHHHhhhcCCceEEEE-eecCCHHHHHHhhccCCccE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYY-DPSLKRARQKLLQKHQVFIVE-GDLNDAPLLTKLFDVVPFTH 196 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~-~~~~~~~~~~~~~~~~v~~~~-~Dl~d~~~l~~~~~~~~~d~ 196 (476)
|+|+|.|. +..|..+.+.|.+.|++|.++.-..+.. ...............++.++. .++++++.+ +.++..++|+
T Consensus 1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~-~~i~~~~~Dl 78 (203)
T d2blna2 1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWV-ERIAQLSPDV 78 (203)
T ss_dssp CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHH-HHHHHTCCSE
T ss_pred CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhh-hhhhhhcccc
Confidence 78888875 6689999999999999997766322211 000000011111222555544 466665544 4556678899
Q ss_pred EEEcccc
Q 011841 197 VLHLAAQ 203 (476)
Q Consensus 197 Vi~~Ag~ 203 (476)
+|.....
T Consensus 79 ii~~g~~ 85 (203)
T d2blna2 79 IFSFYYR 85 (203)
T ss_dssp EEEESCC
T ss_pred eeeeecc
Confidence 9887643
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=89.95 E-value=0.52 Score=38.31 Aligned_cols=35 Identities=26% Similarity=0.269 Sum_probs=29.6
Q ss_pred CCEEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCC
Q 011841 118 GMTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFN 152 (476)
Q Consensus 118 ~~~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~ 152 (476)
+|+|.|.|+||.||....+-+.+. .++|.+++-+.
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~ 38 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR 38 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence 479999999999999999999875 47888887543
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.47 Score=46.96 Aligned_cols=112 Identities=15% Similarity=0.069 Sum_probs=66.0
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCC--------------CCchHHHHHHhhhc--CCc--eEEEEe
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSY--------------YDPSLKRARQKLLQ--KHQ--VFIVEG 177 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~--------------~~~~~~~~~~~~~~--~~~--v~~~~~ 177 (476)
...+|+|.|+ |.+|.++++.|...|. .++++|...-. .-+.+.....+.+. .+. +..+..
T Consensus 24 ~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~ 102 (529)
T d1yova1 24 ESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE 102 (529)
T ss_dssp HHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESS
T ss_pred hCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcC
Confidence 4468999997 8899999999999996 67777643210 11112222222222 223 333433
Q ss_pred ecCCH-HHHHHhhccCCccEEEEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccccC
Q 011841 178 DLNDA-PLLTKLFDVVPFTHVLHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSVYG 250 (476)
Q Consensus 178 Dl~d~-~~l~~~~~~~~~d~Vi~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~vyg 250 (476)
++.+. +...+++.+. |+||.+.. |......+-+.|++.+++ +|.+.+.+.||
T Consensus 103 ~~~~~~~~~~~~~~~~--dvVv~~~~-----------------~~~~~~~l~~~c~~~~ip--~i~~~~~G~~G 155 (529)
T d1yova1 103 SPENLLDNDPSFFCRF--TVVVATQL-----------------PESTSLRLADVLWNSQIP--LLICRTYGLVG 155 (529)
T ss_dssp CHHHHHHSCGGGGGGC--SEEEEESC-----------------CHHHHHHHHHHHHHHTCC--EEEEEEETTEE
T ss_pred CchhhhhhHHHHhcCC--CEEEECCC-----------------CHHHHHHHHHHHHHcCCC--EEEEeccCCEE
Confidence 32211 1112345555 99997653 233345677889998874 88888877776
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.79 E-value=0.45 Score=39.64 Aligned_cols=82 Identities=20% Similarity=0.059 Sum_probs=53.4
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeec--CCHHHHHHhhccC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDL--NDAPLLTKLFDVV 192 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl--~d~~~l~~~~~~~ 192 (476)
...+|+|+|.|-+.-+|+=++..|+++|..|+.+......... ......-......|+ ...+.+++.....
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~lk~~~~~a 98 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-------RGESLKLNKHHVEDLGEYSEDLLKKCSLDS 98 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-------SCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc-------cccceeeeeeccccccccchhHHhhccccC
Confidence 4789999999999999999999999999999988753210000 000000001112222 3456677777777
Q ss_pred CccEEEEccccCC
Q 011841 193 PFTHVLHLAAQAG 205 (476)
Q Consensus 193 ~~d~Vi~~Ag~~~ 205 (476)
|+||..+|..+
T Consensus 99 --DIvIsavG~p~ 109 (171)
T d1edza1 99 --DVVITGVPSEN 109 (171)
T ss_dssp --SEEEECCCCTT
T ss_pred --CEEEEccCCCc
Confidence 99999988744
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=89.61 E-value=0.41 Score=38.83 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=29.5
Q ss_pred CCEEEEE-CCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 118 GMTVLVT-GAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 118 ~~~VLVt-GatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
++.|+|. .+.||||..+++.|.++|++|+++.+...
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 4566665 34599999999999999999999998653
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=89.61 E-value=0.29 Score=38.63 Aligned_cols=95 Identities=11% Similarity=-0.012 Sum_probs=60.4
Q ss_pred CEEEEECCCChhhHHHHHHHHH-CCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccCCccEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKK-RGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVVPFTHV 197 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~-~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V 197 (476)
.+|+|.|| |.+|+.+++.+.. .|++++++.-...... ...-.++.++. .+.+.++.+. .++++
T Consensus 4 ~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~---------G~~I~Gi~V~~-----~~~l~~~~~~-~i~ia 67 (126)
T d2dt5a2 4 WGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKV---------GRPVRGGVIEH-----VDLLPQRVPG-RIEIA 67 (126)
T ss_dssp EEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTT---------TCEETTEEEEE-----GGGHHHHSTT-TCCEE
T ss_pred ceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhc---------CCEECCEEEec-----HHHHHHHHhh-cccEE
Confidence 38999997 9999999998754 4788888876443211 11122566553 3456666654 34665
Q ss_pred EEccccCChhhhhcChHHHHHHHHHHHHHHHHHHHhcCCCCeEEEecCccc
Q 011841 198 LHLAAQAGVRYAMQNPQSYVASNIAGFVNLLEVCKSVNPQPSIVWASSSSV 248 (476)
Q Consensus 198 i~~Ag~~~~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~~V~~SS~~v 248 (476)
+-+... .....+++.|.+.|++ .+..++....
T Consensus 68 i~~i~~------------------~~~~~I~d~l~~~gIk-~I~~f~~~~l 99 (126)
T d2dt5a2 68 LLTVPR------------------EAAQKAADLLVAAGIK-GILNFAPVVL 99 (126)
T ss_dssp EECSCH------------------HHHHHHHHHHHHHTCC-EEEECSSSCC
T ss_pred EEeCCH------------------HHHHHHHHHHHHcCCC-EEeecCceee
Confidence 554421 1234678888889986 7887766543
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=89.45 E-value=0.87 Score=37.20 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCChhhHHH-HHHHHHC-CCeEEEEe
Q 011841 116 PNGMTVLVTGAAGFVGSHC-SLALKKR-GDGVLGLD 149 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l-~~~L~~~-G~~V~~~~ 149 (476)
.+.++|.|.| +|.||+.+ .+.|... ..+++++.
T Consensus 2 ~kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~ava 36 (157)
T d1nvmb1 2 NQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMV 36 (157)
T ss_dssp CSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred CCCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEE
Confidence 3557999999 89999865 4555443 34666664
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=89.42 E-value=0.59 Score=40.85 Aligned_cols=34 Identities=26% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
..+++|+|-|- |-+|+++++.|.+.|.+|++.+.
T Consensus 37 l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~ 70 (230)
T d1leha1 37 LEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDV 70 (230)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecc
Confidence 68899999995 99999999999999999999875
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=89.15 E-value=0.16 Score=36.53 Aligned_cols=34 Identities=24% Similarity=0.116 Sum_probs=30.5
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
|+|.|.|+ |.+|+-++.+-.+.|++|++++-..+
T Consensus 2 k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 68999996 99999999999999999999986443
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.90 E-value=0.72 Score=36.90 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=30.3
Q ss_pred CCCEEEEECCC---ChhhHHHHHHHHHCCCeEEEEeC
Q 011841 117 NGMTVLVTGAA---GFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 117 ~~~~VLVtGat---G~IG~~l~~~L~~~G~~V~~~~R 150 (476)
+.++|.|.||+ +-.|..+++.|.+.||+|+.+..
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP 54 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNP 54 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECC
Confidence 45799999998 78999999999999999988864
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=88.76 E-value=0.6 Score=36.32 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=51.6
Q ss_pred CCCEEEEECCCC----------hhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHH
Q 011841 117 NGMTVLVTGAAG----------FVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLT 186 (476)
Q Consensus 117 ~~~~VLVtGatG----------~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~ 186 (476)
+.++|||.|+.. +-+.+.+++|.+.|++++++..+.+-.+.. .....+ +...--..+.+.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd-------~d~aD~---lYfeplt~e~v~ 72 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTD-------YDTSDR---LYFEPVTLEDVL 72 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTS-------TTSSSE---EECCCCSHHHHH
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcC-------hhhcCc---eEEccCCHHHHH
Confidence 567999999743 578899999999999999988755432211 001112 222334567788
Q ss_pred HhhccCCccEEEEccc
Q 011841 187 KLFDVVPFTHVLHLAA 202 (476)
Q Consensus 187 ~~~~~~~~d~Vi~~Ag 202 (476)
++++..+||.||--.|
T Consensus 73 ~Ii~~E~p~~ii~~~G 88 (121)
T d1a9xa4 73 EIVRIEKPKGVIVQYG 88 (121)
T ss_dssp HHHHHHCCSEEECSSS
T ss_pred HHHHHhCCCEEEeehh
Confidence 8888778888876554
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.63 E-value=0.24 Score=41.08 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=30.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
.+++|+|.|| |++|-.++..|.+.|.+|.++.+...
T Consensus 2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~~ 37 (185)
T d1q1ra1 2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGDA 37 (185)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecCc
Confidence 4578999997 99999999999999998777665543
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=88.47 E-value=0.34 Score=41.58 Aligned_cols=86 Identities=10% Similarity=0.027 Sum_probs=54.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchH----HHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSL----KRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~----~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
+.|+|++.| ++..+..+.+.|.+.|++|.++....+...... ...........++.+...+..+.+...+.++..
T Consensus 2 ~~mKI~f~G-~~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (206)
T d1fmta2 2 ESLRIIFAG-TPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAEL 80 (206)
T ss_dssp CCCEEEEEE-CSHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHT
T ss_pred CCcEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhh
Confidence 468999998 578899999999999999877664322111100 001111222335666666665666677778888
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
++|++|-+...
T Consensus 81 ~~d~~v~~~~~ 91 (206)
T d1fmta2 81 QADVMVVVAYG 91 (206)
T ss_dssp TCSEEEEESCC
T ss_pred cceEEEeeccc
Confidence 88998877654
|
| >d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-transferase family III (CaiB/BaiF) superfamily: CoA-transferase family III (CaiB/BaiF) family: CoA-transferase family III (CaiB/BaiF) domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB species: Escherichia coli [TaxId: 562]
Probab=88.26 E-value=1.8 Score=40.60 Aligned_cols=85 Identities=12% Similarity=0.204 Sum_probs=58.2
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHH---HHHHhhcc
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAP---LLTKLFDV 191 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~---~l~~~~~~ 191 (476)
+.++.+||=.+ +..-|-+..+.|++.|++|+=+-+................ ...+-+.+..|+.+++ .+.++++.
T Consensus 8 PL~GirVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~-~n~~K~si~ldl~~~~G~~~~~~Lv~~ 85 (402)
T d1xk7a1 8 PLAGLRVVFSG-IEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQL-SRRNLHALSLNIFKDEGREAFLKLMET 85 (402)
T ss_dssp TTTTCEEEEEC-CSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHH-HTTTCEEEEECTTSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeC-ChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHH-hCCCCeEEEEeCcCHHHHHHHHHHHhh
Confidence 36788888666 4556999999999999999998764422111111111111 1346678999998875 57788888
Q ss_pred CCccEEEEcccc
Q 011841 192 VPFTHVLHLAAQ 203 (476)
Q Consensus 192 ~~~d~Vi~~Ag~ 203 (476)
+ |+||+|--.
T Consensus 86 a--Dv~i~n~rp 95 (402)
T d1xk7a1 86 T--DIFIEASKG 95 (402)
T ss_dssp C--SEEEEECSS
T ss_pred c--CCceeeecc
Confidence 8 999999754
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=88.13 E-value=0.58 Score=38.57 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=46.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCCCCCCchHHHHHHhhhcCCce-EEEEeecCC----HHHHHHhh
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFNSYYDPSLKRARQKLLQKHQV-FIVEGDLND----APLLTKLF 189 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~~~v-~~~~~Dl~d----~~~l~~~~ 189 (476)
..+.+|+|.|+ |.+|...+..+...|. .|+++++.+++ .+...+. +. +++ |..+ .+.+.+..
T Consensus 27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r-----l~~a~~~----GAd~~i--n~~~~~~~~~~~~~~~ 94 (175)
T d1cdoa2 27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDK-----FEKAKVF----GATDFV--NPNDHSEPISQVLSKM 94 (175)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGG-----HHHHHHT----TCCEEE--CGGGCSSCHHHHHHHH
T ss_pred CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHH-----HHHHHHc----CCcEEE--cCCCcchhHHHHHHhh
Confidence 46678999997 6688888888888765 68888774431 1111111 22 222 3222 23444555
Q ss_pred ccCCccEEEEcccc
Q 011841 190 DVVPFTHVLHLAAQ 203 (476)
Q Consensus 190 ~~~~~d~Vi~~Ag~ 203 (476)
.+..+|++|.+.|.
T Consensus 95 ~~~G~d~vid~~G~ 108 (175)
T d1cdoa2 95 TNGGVDFSLECVGN 108 (175)
T ss_dssp HTSCBSEEEECSCC
T ss_pred ccCCcceeeeecCC
Confidence 55567999999986
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=87.92 E-value=0.28 Score=45.29 Aligned_cols=37 Identities=27% Similarity=0.247 Sum_probs=32.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCC--CeEEEEeCCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRG--DGVLGLDNFNS 153 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G--~~V~~~~R~~~ 153 (476)
...|+|+|+|| |.-|-.++..|+++| ++|+++.|.+.
T Consensus 2 ~~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 2 PTIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CSCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 46689999997 999999999999876 69999998654
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=87.88 E-value=0.58 Score=39.47 Aligned_cols=37 Identities=19% Similarity=0.051 Sum_probs=33.2
Q ss_pred CCCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 115 RPNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 115 ~~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
...+++|.|.|. |.||+.+++.|..-|.+|...+|..
T Consensus 41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 41 DLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred eccccceeeccc-cccchhhhhhhhccCceEEEEeecc
Confidence 367899999995 9999999999999999999999854
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.83 E-value=0.76 Score=41.60 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
.++++|+|-|- |-+|+++++.|.+.|.+|++++-
T Consensus 34 L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 34 FGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence 67899999995 99999999999999999998764
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.74 E-value=0.25 Score=42.26 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=29.8
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
-|+|+|| |.-|...|..|+++|++|.++.+.+.
T Consensus 7 DviViGa-G~~Gl~~A~~La~~G~~V~vlE~~~~ 39 (297)
T d2bcgg1 7 DVIVLGT-GITECILSGLLSVDGKKVLHIDKQDH 39 (297)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence 4899996 99999999999999999999998653
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=87.73 E-value=1.2 Score=34.37 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=28.5
Q ss_pred CEEEEECCC---ChhhHHHHHHHHHCCCeEEEEeC
Q 011841 119 MTVLVTGAA---GFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 119 ~~VLVtGat---G~IG~~l~~~L~~~G~~V~~~~R 150 (476)
|+|.|.|++ +-.|..+.+.|++.||+|+.+..
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP 36 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNP 36 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcc
Confidence 689999988 67999999999999999988753
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.60 E-value=0.051 Score=47.45 Aligned_cols=29 Identities=38% Similarity=0.581 Sum_probs=25.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEE
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGL 148 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~ 148 (476)
|+|+|.|| |.+|-.+|..|+++|++|+++
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~ 29 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYHSVLQP 29 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHTTTSSS
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCceEE
Confidence 78999997 999999999999999876544
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=87.57 E-value=1 Score=37.11 Aligned_cols=33 Identities=18% Similarity=0.355 Sum_probs=26.2
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHC-CCeEEEEeC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKR-GDGVLGLDN 150 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~-G~~V~~~~R 150 (476)
+.++|.|.|. |.+|+.+++.|.+. +.+++++..
T Consensus 2 ~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~ 35 (170)
T d1f06a1 2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFS 35 (170)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred CcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEe
Confidence 3568999995 99999999999876 567766554
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.43 E-value=0.24 Score=42.12 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=27.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
|+|.|.| .|++|..++..| ++|++|++.|.+.
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~ 32 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILP 32 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCH
Confidence 7899998 699999999755 5799999999743
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=87.24 E-value=0.27 Score=43.86 Aligned_cols=32 Identities=38% Similarity=0.574 Sum_probs=29.2
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
-|+|+|| |..|..++.+|+++|++|+++.+..
T Consensus 5 DvvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3899997 9999999999999999999999854
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.15 E-value=0.32 Score=43.63 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=30.8
Q ss_pred CCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 117 NGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 117 ~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
+..+|+|+|| |.-|-..+.+|.++|++|+++-..+
T Consensus 4 ~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 4 KTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 4568999997 9999999999999999999997543
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=86.88 E-value=0.3 Score=41.25 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=28.7
Q ss_pred CEEEEECCCChhhHHHHHHHHHC--CCeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKR--GDGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~--G~~V~~~~R~~ 152 (476)
|||+|.|| |++|-.++..|.+. +.+|+++.|..
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 78999997 99999999999887 45788888765
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=86.58 E-value=0.34 Score=44.20 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=32.7
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
.+...|+|+|| |..|-.++..|+++|.+|+++.+.++
T Consensus 5 ~~~~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 5 PEEVDVLVVGA-GFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp CSEEEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CCCCCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 45568999998 99999999999999999999998554
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=86.39 E-value=1.1 Score=39.29 Aligned_cols=34 Identities=32% Similarity=0.489 Sum_probs=31.0
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDN 150 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R 150 (476)
.++++|+|-| -|-+|+++++.|.+.|.+|++++-
T Consensus 29 l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 29 IEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence 6889999998 599999999999999999988774
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.38 E-value=1.3 Score=35.87 Aligned_cols=36 Identities=22% Similarity=0.204 Sum_probs=30.3
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCe-EEEEeCCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDG-VLGLDNFN 152 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~-V~~~~R~~ 152 (476)
.-+++|+|.|| |.+|-..+..+++.|.+ |+++.|..
T Consensus 43 ~~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 43 SIRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred cCCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 45678999997 99999999999999875 77887755
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=85.38 E-value=0.35 Score=43.60 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=28.7
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~ 152 (476)
+|+|+|| |.+|..++..|+++|. +|++++|+.
T Consensus 3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 5999997 9999999999999996 699999853
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.78 E-value=1.1 Score=37.84 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=55.1
Q ss_pred CCEEE-EECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc-CCceEEEEeecCCHHHHHHhhccCCcc
Q 011841 118 GMTVL-VTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ-KHQVFIVEGDLNDAPLLTKLFDVVPFT 195 (476)
Q Consensus 118 ~~~VL-VtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~~~v~~~~~Dl~d~~~l~~~~~~~~~d 195 (476)
+.+|+ +|.|+|....++.+.+ . +.+|+++|++.. +++........ ..++.++.++..+...+-.-+...++|
T Consensus 24 ~~~~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~----~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vd 97 (192)
T d1m6ya2 24 EKIILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSE----VLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVD 97 (192)
T ss_dssp TCEEEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHH----HHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEE
T ss_pred CCEEEEecCCCcHHHHHHHhcC-C-CCeEEEeechHH----HHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcc
Confidence 34444 6788888888888876 3 468999999443 33333333322 347999999988766655554445679
Q ss_pred EEEEccccCC
Q 011841 196 HVLHLAAQAG 205 (476)
Q Consensus 196 ~Vi~~Ag~~~ 205 (476)
.|+.-.|..+
T Consensus 98 gIl~DlGvSs 107 (192)
T d1m6ya2 98 GILMDLGVST 107 (192)
T ss_dssp EEEEECSCCH
T ss_pred eeeeccchhH
Confidence 9988888744
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=84.45 E-value=0.59 Score=37.93 Aligned_cols=31 Identities=19% Similarity=0.117 Sum_probs=25.1
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
||-+.|- |.+|..+++.|++.|+.| +.+|..
T Consensus 2 kIg~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~ 32 (156)
T d2cvza2 2 KVAFIGL-GAMGYPMAGHLARRFPTL-VWNRTF 32 (156)
T ss_dssp CEEEECC-STTHHHHHHHHHTTSCEE-EECSST
T ss_pred eEEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCH
Confidence 5788885 999999999999999866 455533
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.22 E-value=0.6 Score=40.90 Aligned_cols=34 Identities=35% Similarity=0.634 Sum_probs=30.0
Q ss_pred CEEEEECCCChhhHHHHHHHHHCC-CeEEEEeCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRG-DGVLGLDNFNS 153 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G-~~V~~~~R~~~ 153 (476)
++|+|+|| |..|-.++..|.++| ++|+++.|...
T Consensus 2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 68999997 999999999999999 58999987543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=84.14 E-value=4.1 Score=33.07 Aligned_cols=77 Identities=18% Similarity=0.045 Sum_probs=45.9
Q ss_pred CCCCEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhc--------------CCceEEEEeecCC
Q 011841 116 PNGMTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQ--------------KHQVFIVEGDLND 181 (476)
Q Consensus 116 ~~~~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~Dl~d 181 (476)
..+.+||..|+ +.|+ .+..|+++|++|++++.+.. ++...+..... ...+.++.+|..+
T Consensus 19 ~~~~rvLd~GC--G~G~-~a~~la~~G~~V~gvD~S~~----~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 91 (201)
T d1pjza_ 19 VPGARVLVPLC--GKSQ-DMSWLSGQGYHVVGAELSEA----AVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA 91 (201)
T ss_dssp CTTCEEEETTT--CCSH-HHHHHHHHCCEEEEEEECHH----HHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred CCCCEEEEecC--cCCH-HHHHHHHcCCceEeecccHH----HHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence 46679999995 3343 45577778999999997433 33333333211 2345677888766
Q ss_pred HHHHHHhhccCCccEEEEcccc
Q 011841 182 APLLTKLFDVVPFTHVLHLAAQ 203 (476)
Q Consensus 182 ~~~l~~~~~~~~~d~Vi~~Ag~ 203 (476)
..... ...+|.|+.....
T Consensus 92 l~~~~----~~~~D~i~~~~~l 109 (201)
T d1pjza_ 92 LTARD----IGHCAAFYDRAAM 109 (201)
T ss_dssp STHHH----HHSEEEEEEESCG
T ss_pred ccccc----ccceeEEEEEeee
Confidence 43221 1134777765544
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=83.56 E-value=0.53 Score=38.20 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=26.9
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
||+|.|| |++|-.++..|. ++.+|+++.+..
T Consensus 2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence 7899997 999999999985 578999998754
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.52 E-value=0.41 Score=43.52 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=30.4
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNS 153 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~ 153 (476)
..|+|+|| |.-|-.+|+.|+++|++|.++.+.+.
T Consensus 2 ~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 2 YDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred ccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 36899997 99999999999999999999987554
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.27 E-value=0.97 Score=38.54 Aligned_cols=79 Identities=15% Similarity=0.174 Sum_probs=47.3
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCCCCCCc--hHHHHHHhhhcCCceEEEE------eecCCHHHHHHhhc
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFNSYYDP--SLKRARQKLLQKHQVFIVE------GDLNDAPLLTKLFD 190 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~--~~~~~~~~~~~~~~v~~~~------~Dl~d~~~l~~~~~ 190 (476)
|||++.| ++..|..+.+.|.+.|++|.++....+.... ...... ...++.+.. -+..+++.++ .++
T Consensus 1 MkI~~~G-~~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a----~~~~ipv~~~~~~~~~~~~~~~~~~-~l~ 74 (203)
T d2bw0a2 1 MKIAVIG-QSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEA----EKDGVPVFKYSRWRAKGQALPDVVA-KYQ 74 (203)
T ss_dssp CEEEEEC-CHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHH----HHHTCCEEECSCCEETTEECHHHHH-HHH
T ss_pred CEEEEEc-CCHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhH----HhcCCcccccccccccccccHHHHH-HHH
Confidence 7899998 5788999999999999999876642222111 111111 111333222 2334445444 456
Q ss_pred cCCccEEEEcccc
Q 011841 191 VVPFTHVLHLAAQ 203 (476)
Q Consensus 191 ~~~~d~Vi~~Ag~ 203 (476)
..++|++|-.+..
T Consensus 75 ~~~~Dliv~~~~~ 87 (203)
T d2bw0a2 75 ALGAELNVLPFCS 87 (203)
T ss_dssp TTCCSEEEESSCS
T ss_pred HhCCCceEEeecc
Confidence 6688999987643
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=83.16 E-value=0.9 Score=39.39 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=54.0
Q ss_pred CCCCEEEEEC-CCChhhHHHHHHHHHCC----CeEEEEeCCCCCCCchHHHHHH---hhhcCCceEEEEeecCCHHHHHH
Q 011841 116 PNGMTVLVTG-AAGFVGSHCSLALKKRG----DGVLGLDNFNSYYDPSLKRARQ---KLLQKHQVFIVEGDLNDAPLLTK 187 (476)
Q Consensus 116 ~~~~~VLVtG-atG~IG~~l~~~L~~~G----~~V~~~~R~~~~~~~~~~~~~~---~~~~~~~v~~~~~Dl~d~~~l~~ 187 (476)
..+.+||..| ||||....+++.+...| .+|+.+.+..+-.+...+.... ......++.++.+|..+.
T Consensus 79 ~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~----- 153 (223)
T d1r18a_ 79 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKG----- 153 (223)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGC-----
T ss_pred CCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccc-----
Confidence 4567999998 47888888887777777 4899998744322222221111 112334789999987541
Q ss_pred hhccCCccEEEEccccC
Q 011841 188 LFDVVPFTHVLHLAAQA 204 (476)
Q Consensus 188 ~~~~~~~d~Vi~~Ag~~ 204 (476)
..+..+||.||-.++..
T Consensus 154 ~~~~~~fD~Iiv~~a~~ 170 (223)
T d1r18a_ 154 YPPNAPYNAIHVGAAAP 170 (223)
T ss_dssp CGGGCSEEEEEECSCBS
T ss_pred cccccceeeEEEEeech
Confidence 23345789999888763
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.23 E-value=0.48 Score=42.25 Aligned_cols=32 Identities=28% Similarity=0.255 Sum_probs=29.5
Q ss_pred EEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
+|+|.|| |-.|-.++..|.++|++|+++.+..
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 6999998 8999999999999999999998843
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=81.77 E-value=0.63 Score=39.76 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=28.6
Q ss_pred EEEEECCCChhhHHHHHHHHHCCC-eEEEEeCCC
Q 011841 120 TVLVTGAAGFVGSHCSLALKKRGD-GVLGLDNFN 152 (476)
Q Consensus 120 ~VLVtGatG~IG~~l~~~L~~~G~-~V~~~~R~~ 152 (476)
+|+|+|| |.-|-..|..|.++|+ +|+++.+..
T Consensus 2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 5899997 9999999999999996 799998754
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=80.62 E-value=1.7 Score=36.98 Aligned_cols=82 Identities=15% Similarity=0.156 Sum_probs=56.7
Q ss_pred CCCCCCEEEEEC-CCChhhHHHHHHHHHCCCeEEEEeCCCCCCCchHHHHHHhhhcCCceEEEEeecCCHHHHHHhhccC
Q 011841 114 RRPNGMTVLVTG-AAGFVGSHCSLALKKRGDGVLGLDNFNSYYDPSLKRARQKLLQKHQVFIVEGDLNDAPLLTKLFDVV 192 (476)
Q Consensus 114 ~~~~~~~VLVtG-atG~IG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 192 (476)
....+++||=.| |+|..-.++++.. ..| +|++++.... +.+..........++.++.+|..++......++.+
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v-~~g-~V~gvDis~~----~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v 126 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIV-DEG-IIYAVEYSAK----PFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKV 126 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHT-TTS-EEEEECCCHH----HHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhc-cCC-eEEEEeCCHH----HHHHHHHHhhccCCceEEEeeccCccccccccceE
Confidence 335678999777 5677777787655 455 8999987433 34444444444568999999999988777666655
Q ss_pred CccEEEEcccc
Q 011841 193 PFTHVLHLAAQ 203 (476)
Q Consensus 193 ~~d~Vi~~Ag~ 203 (476)
|+|+|....
T Consensus 127 --d~v~~~~~~ 135 (209)
T d1nt2a_ 127 --DLIYQDIAQ 135 (209)
T ss_dssp --EEEEECCCS
T ss_pred --EEEEecccC
Confidence 888876543
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.44 E-value=0.78 Score=41.42 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=28.5
Q ss_pred EEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 121 VLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 121 VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
|+|+|| |.-|-..+..|+++|++|+++.+.+
T Consensus 2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 789997 9999999999999999999998754
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=80.14 E-value=0.42 Score=39.68 Aligned_cols=33 Identities=24% Similarity=0.182 Sum_probs=26.8
Q ss_pred CEEEEECCCChhhHHHHHHHHHCCCeEEEEeCCC
Q 011841 119 MTVLVTGAAGFVGSHCSLALKKRGDGVLGLDNFN 152 (476)
Q Consensus 119 ~~VLVtGatG~IG~~l~~~L~~~G~~V~~~~R~~ 152 (476)
.+|+|.|| |++|-.++..|.+.|.+|.++.+..
T Consensus 4 a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~~ 36 (183)
T d1d7ya1 4 APVVVLGA-GLASVSFVAELRQAGYQGLITVVGD 36 (183)
T ss_dssp SSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred CCEEEECc-cHHHHHHHHHHHhcCCceEEEEEec
Confidence 35999996 9999999999999998766655433
|