Citrus Sinensis ID: 011853

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------
Protein Sequence
MERHGRVSEGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPHSSMQQSGQSSGPSTADDSSAEART
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccHccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccHHHEEccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
merhgrvsegsqsdpspewtapgtetgpeglgvgaesyperpdeadcihyvrtgfcaygsrcrfnhprdrgsvmgaaragggefpervgqpvcqyymrtgtckygasckyhhprqgagsvsnvslnyygyplrpgekeCSYYMKtrqckfgatckfhhpqpagvpaptpspapqvaavptpvpapalypplqspsvpsaqqygvvvarppllhgsyvqgpygpvlvspsmfslqgwspyatslnpisspgtgtqssvgsssiygitqlsasapaytgtyqslpssvgpssssqkehpfperpgqqeCQYYmktgdckfgsscrfhhprelivpkmdvtlspfglplrpgaapcthyvqrgvckfgpackfdhpmgmlsyspsassladmpvapypvgssigtlapssassdlrpelisgsskdsvstrmsssvsissgsvgsilsksgpvphssmqqsgqssgpstaddssaeart
Flexible Loop (DISEMBL)
merhgrvsegsqsdpspewtapgtetgpeGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAaragggefpervgQPVCQYYMRTGTCKYGASCKYHHprqgagsvsnvSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELIsgsskdsvstRMSSSVSISSGSVGSILSKSGPVPHSsmqqsgqssgpstaddssaeart
Low Complexity Region (SEG)
MERHGRVSEGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHpqpagvpaptpspapqvaavptpvpapalyppLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPIsspgtgtqssvgsssIYGITQLSASAPAYTGTYQslpssvgpssssQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISGsskdsvstrmsssvsissgsvgsilsksgPVPHssmqqsgqssgpsTADDSSAEART
Disordered region (IsUnstruct)
********************************************ADCIHYVRTGFCAYGSRCRFNHPR****VM****AGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFH*******************************************QYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYA******************************************************************CQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGML***************************************************************************************************
Disordered Region (DISOPRED)
********************************************ADCIHYVRTGFCAYGSRCRFNHPRDR*****************VGQPVCQYYMRTGTCKYGASCKY*******************YPLRPGEKECSYYMKTRQCKFGATCKFH******************************************************************************************************************************************************QYYMKTGDCKFGSSC************************RPGAAPCTHYVQRGVCKFGPACKF**********************************************************************************************************
Disordered Region (DISEMBL)
*************************TGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPI*************SSIYGITQLSASAPAYTGTY**********************PGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTL*************************************GSILSK******************************
Disordered Region (DISPRO)
**************************************PERPDEADCIHYVRTGFCAYGSRCRFNHPRDR***********GEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP******************************************YGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNP*****************************************************PERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGM**********ADMPV*P***********************************************************************************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERHGRVSEGSQSDPSPEWTAPGTETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPHSSMQQSGQSSGPSTADDSSAEART
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	476	2.2.26 [Sep-21-2011]
Q6NPN3	465	Zinc finger CCCH domain-c	yes	no	0.939	0.961	0.581	1e-136
Q84W91	468	Zinc finger CCCH domain-c	no	no	0.876	0.891	0.547	1e-129
Q9SQU4	462	Zinc finger CCCH domain-c	no	no	0.810	0.835	0.615	1e-123
Q5NAW2	476	Zinc finger CCCH domain-c	yes	no	0.831	0.831	0.537	1e-122
Q5NAV3	466	Zinc finger CCCH domain-c	no	no	0.821	0.839	0.492	1e-108
Q2R4J4	444	Zinc finger CCCH domain-c	no	no	0.806	0.864	0.441	2e-89
Q9SWF9	417	Zinc finger CCCH domain-c	N/A	no	0.758	0.865	0.464	8e-88
Q2QT65	454	Zinc finger CCCH domain-c	no	no	0.785	0.823	0.434	2e-84
Q8GXX7	397	Zinc finger CCCH domain-c	no	no	0.676	0.811	0.438	2e-82
Q5JLB5	439	Zinc finger CCCH domain-c	no	no	0.697	0.756	0.446	6e-81

>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis thaliana GN=At5g18550 PE=2 SV=1

 Score =  486 bits (1250), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 286/492 (58%), Positives = 342/492 (69%), Gaps = 45/492 (9%)

Query: 1   MERHGRVSEG-SQSDPSPEWTAPGTETGPEG---------LGVGAESYPERPDEADCIHY 50
           MER+G   E  S+SDPS EW+A GTETG E           G G E++PERPDE DCI+Y
Sbjct: 1   MERYGGAGEDESRSDPSHEWSAQGTETGIEASMWRLGLRGGGGGGETFPERPDEPDCIYY 60

Query: 51  VRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKY 110
           +RTG C YGSRCRFNHPR+R  V+G  R   GEFPER+GQPVCQ++MRTGTCK+GASCKY
Sbjct: 61  LRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKY 120

Query: 111 HHPRQGAG--SVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPT 168
           HHPRQG G  SV+ VSLNY G+PLRPGEKECSY+M+T QCKFG+TC++HHP P GV AP+
Sbjct: 121 HHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPS 180

Query: 169 PSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGP--YGPVLV 226
                Q++A PT      +YP LQS +VPS+QQYGVV+ARP LL GSYVQ P  YG +++
Sbjct: 181 QQQQQQLSAGPT------MYPSLQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVL 234

Query: 227 SPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSV 286
            P M    GW+PY  S++ + SP  GTQ S+G+SS+YGIT LS SAPA    YQS PSS 
Sbjct: 235 PPGMVPYSGWNPYQASVSAMPSP--GTQPSMGTSSVYGITPLSPSAPA----YQSGPSST 288

Query: 287 GPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPL 346
           G    S KE  FP+RP Q ECQY+M+TGDCKFG+SCRFHHP E   P+   TLS  GLPL
Sbjct: 289 G---VSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEAS-TLSHIGLPL 344

Query: 347 RPGAAPCTHYVQRGVCKFGPACKFDH--PMGMLSYSPSASSLADMPVAPYPVGSSIGTLA 404
           RPGA PCTH+ Q G+CKFGPACKFDH      LSYSPS SSL DMPVAPYP  SS+GTLA
Sbjct: 345 RPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSSLTDMPVAPYP--SSLGTLA 402

Query: 405 PSSASSDLRPELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPHSSMQQSGQSSGP 464
           PSS SSD   ELIS SS + ++T    S ++++G        S P P  +          
Sbjct: 403 PSS-SSDQCTELISSSSIEPITTTTGGSETVAAGVSSMTSDVSHPEPAET---------- 451

Query: 465 STADDSSAEART 476
           +  D +S EA+T
Sbjct: 452 NKGDSASNEAKT 463

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2

 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 246/449 (54%), Positives = 313/449 (69%), Gaps = 32/449 (7%)

Query: 9   EGSQSDPSPEWTAPGTETGPEG----LGVGAESYPERPDEADCIHYVRTGFCAYGSRCRF 64
            GSQS  +P+WT    +TG +     LG+G++SYPERP   DC +Y+RTG C YG+RCR+
Sbjct: 9   NGSQSAQAPDWTPADADTGLQESMWRLGLGSDSYPERPGAPDCAYYMRTGVCGYGNRCRY 68

Query: 65  NHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVS 124
           NHPRDR SV    RA G ++PER G+P CQ+Y++TGTCK+GASCK+HHP+   GS+S+V 
Sbjct: 69  NHPRDRASVEATVRATG-QYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVP 127

Query: 125 LNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPA 184
           LN YGYP+R G+ ECSYY+KT QCKFG TCKFHHPQPAG   P P           P  A
Sbjct: 128 LNIYGYPVREGDNECSYYLKTGQCKFGITCKFHHPQPAGTTVPPP-----------PASA 176

Query: 185 PALYPPLQSPSVPSAQQYG-----VVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPY 239
           P  YP +QS  +P   QYG     + VAR  LL GSY+QG YGP+L++P +  + GWSPY
Sbjct: 177 PQFYPSVQS-LMP--DQYGGPSSSLRVART-LLPGSYMQGAYGPMLLTPGVVPIPGWSPY 232

Query: 240 ATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFP 299
           +  ++P  SPG   Q +VG++S+YG+TQL+++ P+  G Y SL S   P+   QKE  FP
Sbjct: 233 SAPVSPALSPGA--QHAVGATSLYGVTQLTSTTPSLPGVYPSLSS---PTGVIQKEQAFP 287

Query: 300 ERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQR 359
           ERPG+ ECQYY+KTGDCKFG+SC+FHHPR+ + P+ +  LSP GLPLRPG   CT YVQ 
Sbjct: 288 ERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQN 347

Query: 360 GVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISG 419
           G CKFG  CKFDHPMG + Y+PSASSLAD PVAPYPV S +G LA + +SS    ELI+G
Sbjct: 348 GFCKFGSTCKFDHPMGTIRYNPSASSLADAPVAPYPVSSLLGALAAAPSSSST--ELIAG 405

Query: 420 SSKDSVSTRMSSSVSISSGSVGSILSKSG 448
            +KD+  T + +S S S+ S G I S+SG
Sbjct: 406 GAKDAYMTGVPTSRSTSNISAGLIFSQSG 434

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2

 Score =  442 bits (1136), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/413 (61%), Positives = 299/413 (72%), Gaps = 27/413 (6%)

Query: 1   MERHGR-VSEGSQSDPSPEWTAPGTETGPEG----LGVGA--------ESYPERPDEADC 47
           MER+GR   EGS+SDPS EWT+ G ET  E     LG+          ESYPERPDE DC
Sbjct: 1   MERYGRPGEEGSRSDPSLEWTSHGGETAVEAPMWRLGLSGGGGGGGGGESYPERPDEPDC 60

Query: 48  IHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGAS 107
           I+Y+RTG C YGSRCRFNHPRDRG+V+G  R   G  PER+G PVCQ++MRTGTCK+GAS
Sbjct: 61  IYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQHFMRTGTCKFGAS 120

Query: 108 CKYHHPRQ--GAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVP 165
           CKYHHPRQ  G GSV+ VSL+Y GYPLRPGEKECSYY++T QCKFG TC+F+HP P  V 
Sbjct: 121 CKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQ 180

Query: 166 APTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYG-PV 224
            P   P  Q            +YP LQS S+PS+QQYG+V+ RP  L GSY+Q PYG P+
Sbjct: 181 GPPQQPQQQQPQ--PQPQLQTIYPTLQSQSIPSSQQYGLVLTRPSFLTGSYLQSPYGPPM 238

Query: 225 LVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPS 284
           ++ P M    GW+PY  SL+ + SP  GTQ S+GSSSIYG+T LS SA AYTGTYQS+PS
Sbjct: 239 VLPPGMVPYSGWNPYQASLSAMPSP--GTQPSIGSSSIYGLTPLSPSATAYTGTYQSVPS 296

Query: 285 SVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGL 344
               S+S+ KE  FP+RP Q ECQY+M+TGDCKFGSSCR+HHP + + PK  + LS  GL
Sbjct: 297 ----SNSTSKE--FPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGL 350

Query: 345 PLRPGAAPCTHYVQRGVCKFGPACKFDH-PMGMLSYSPSASSLADMPVAPYPV 396
           PLRPG A CTH+ Q G+CKFGPACKFDH     LSYSPSASSL DMPVAPYP+
Sbjct: 351 PLRPGVAQCTHFAQHGICKFGPACKFDHSMSSSLSYSPSASSLTDMPVAPYPI 403

Arabidopsis thaliana (taxid: 3702)

>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=Os01g0258700 PE=2 SV=2

 Score =  437 bits (1124), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/428 (53%), Positives = 290/428 (67%), Gaps = 32/428 (7%)

Query: 39  PERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVM---GAARAGGGEFPERVGQPVCQY 95
           PERP E DC++Y+RTG C +G RCR+NHPRDRG      GA  A   ++PER GQP+C+Y
Sbjct: 57  PERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEY 116

Query: 96  YMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCK 155
           YM+TGTCK+G +CKYHHP+Q  G+V  V LN  G+P+R GEKECSYYMKT QCKFG TCK
Sbjct: 117 YMKTGTCKFGTNCKYHHPKQ-DGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCK 175

Query: 156 FHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVV----VARPPL 211
           FHHP+  GVP                   P +YPPLQSPS+ S   Y  +    + RPP+
Sbjct: 176 FHHPEFGGVPM-----------------TPGIYPPLQSPSIASPHPYASLANWQMGRPPV 218

Query: 212 LHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQL-SA 270
           + GSY+ G Y P+++S  M  LQGWSPY  S+NP+ S   G Q +V +  +YG+    S+
Sbjct: 219 VPGSYIPGSYTPMMLSSGMIPLQGWSPYPASVNPVVS--GGAQQNVQAGPVYGMGHHGSS 276

Query: 271 SAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPREL 330
           S  AY G Y    SS G SS++Q+EH FPERPGQ +CQYYM+TGDCKFG++C++HHPREL
Sbjct: 277 STIAYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPREL 336

Query: 331 IVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMP 390
             PK    ++   LPLRPGA PC +Y Q G C++G ACK+DHPMG L YSPSA  L+DMP
Sbjct: 337 SAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYSPSALPLSDMP 396

Query: 391 VAPYPVGSSIGTLAPSSASSDLRPELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPV 450
           +APYP+G SI TLAPSS S DLRPE I  S+KD    +++S V+ S   VGSIL K G  
Sbjct: 397 IAPYPIGFSIATLAPSSPSPDLRPEYI--STKDQSVNQVTSPVAASE-PVGSILPK-GVF 452

Query: 451 PHSSMQQS 458
           P  +M ++
Sbjct: 453 PADTMMRA 460

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=Os01g0257400 PE=2 SV=1

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/428 (49%), Positives = 276/428 (64%), Gaps = 37/428 (8%)

Query: 33  VGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGG------EFPE 86
           V A   PERP EADC++Y+RTG C YG  CR+NHPRDR +   A   GGG      E+PE
Sbjct: 43  VAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAA--AVLNGGGKTTHSAEYPE 100

Query: 87  RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTR 146
           R GQPVC+YYM+ GTCK+G++CKY HPR+G  SV  V LN  GYPLR GEK+C+YY+KT 
Sbjct: 101 RPGQPVCEYYMKNGTCKFGSNCKYDHPREG--SVQAVMLNSSGYPLRSGEKDCTYYVKTG 158

Query: 147 QCKFGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQY---- 202
            CKFG+TCKFHHP+  GV                    P +YPP+Q   + S+  Y    
Sbjct: 159 HCKFGSTCKFHHPEIGGVSE-----------------TPNMYPPVQPQPISSSHPYQHLA 201

Query: 203 GVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSI 262
           G  + RPP+L GS++ G Y P+++  ++  +QGW+PY + +N ++S   G   +V +   
Sbjct: 202 GWQMGRPPVLPGSFLSGSYPPMMLPSTVVPMQGWNPYISPVNQVAS--AGGHQTVQAGPF 259

Query: 263 YGIT-QLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSS 321
           YG++ Q  ++A  Y   Y  L SS  PSSSS++E  FP RPGQ ECQYY+KTG CKFGS+
Sbjct: 260 YGLSHQGPSAAVTYGSQYAPLSSSTMPSSSSKQEPAFPARPGQPECQYYLKTGSCKFGSA 319

Query: 322 CRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSP 381
           C++HHP+ L  PK +  LSP GLPLRPG+ PC +Y Q G CKFGP CKFDHPMG LSYSP
Sbjct: 320 CKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYTQHGFCKFGPTCKFDHPMGTLSYSP 379

Query: 382 SASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISGSSKDSVSTRMSSSVSISSGSVG 441
           SASS+ D+P+APYP+  ++  +AP S+SSDLRPE +        S   S+S   + G  G
Sbjct: 380 SASSITDLPIAPYPLNYAVAPVAPPSSSSDLRPEYL---LTKEFSANQSASPGTTCGPAG 436

Query: 442 SILSKSGP 449
           ++L    P
Sbjct: 437 AMLKAYAP 444

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa subsp. japonica GN=Os11g0472000 PE=2 SV=2

 Score =  330 bits (845), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 187/424 (44%), Positives = 244/424 (57%), Gaps = 40/424 (9%)

Query: 30  GLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVG 89
           G  + A  YPER  E DC +Y+RTG C +G  C+FNHP DR   + AAR  G E+P+R+G
Sbjct: 45  GEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKG-EYPQRIG 103

Query: 90  QPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCK 149
           QP CQYY++TGTCK+GA+CK+HHPR+ A   + V LN  GYPLRP EKEC+YY++T QCK
Sbjct: 104 QPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCK 163

Query: 150 FGATCKFHHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQY-GVVVAR 208
           FG+TCKFHHPQP+            + AV   V     Y P QS + PS   Y G V   
Sbjct: 164 FGSTCKFHHPQPSNT----------MVAVRGSV-----YSPGQSVTSPSQHTYPGAVTNW 208

Query: 209 PPLLHGSYVQGP-------YGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSS 261
           P     S++  P       Y  V+V P +  + GW+PYA  +   SS     Q + G + 
Sbjct: 209 PLSRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIG--SSSSDDQQRTAGGAQ 266

Query: 262 IYGITQLSAS-APAYTGTYQSLPSSVGPSS--SSQKEHPFPERPGQQECQYYMKTGDCKF 318
            Y  ++ S +      G + S  +   P    + Q+E  FPERP Q ECQ+YMKTGDCKF
Sbjct: 267 YYTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKF 326

Query: 319 GSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLS 378
           G+ C+FHHP+E I+P  +  LS  GLPLRPG   CT Y + G+CKFGP CKFDHPMG + 
Sbjct: 327 GAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGTVM 386

Query: 379 YSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRPELISGSSKDSVSTRMSSSVSISSG 438
           Y  + S   D+        S+   LAP  A S++ P+ +SG S+       S S  I SG
Sbjct: 387 YGLATSPTGDV--------SARRMLAPVPAHSEVSPDNVSGRSRRITH---SDSQQIPSG 435

Query: 439 SVGS 442
             G+
Sbjct: 436 ERGT 439

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum sativum PE=2 SV=1

 Score =  324 bits (831), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 182/392 (46%), Positives = 236/392 (60%), Gaps = 31/392 (7%)

Query: 38  YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYM 97
           YPE P E DC +Y+RTG C +G+ CRFNHP +R   +  AR  G EFPER+GQP CQYY+
Sbjct: 27  YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKG-EFPERLGQPECQYYL 85

Query: 98  RTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFH 157
           +TGTCK+GA+C++HHP+  AG    V+LN  GYPLRP E E +YY++T QCKFG TCKFH
Sbjct: 86  KTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESERAYYLRTGQCKFGNTCKFH 145

Query: 158 HPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYV 217
           HPQP+ +                 +    +YP +QSP+ P  Q Y   +        SYV
Sbjct: 146 HPQPSNMV--------------LSMRGSTVYPTVQSPTTPGQQSYAAGITN--WSSSSYV 189

Query: 218 -----QGP--YGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSA 270
                QGP  Y P+++   + S+ GWS Y   +   S   T        +S  G  + + 
Sbjct: 190 PSPRWQGPSSYAPLILPQGVVSVPGWSTYGGQMGSESPQQTMRNDQTYGTSHQGELENAG 249

Query: 271 SAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPREL 330
              AY+  Y+S    VG   + Q+++ FPERP Q ECQ+YMKTGDCKFG+ CRFHHPRE 
Sbjct: 250 LQGAYS-QYRSGSVPVG-FYALQRDNIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRER 307

Query: 331 IVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMP 390
            +P  D  LSP GLPLRPG   C  Y + G+CKFGP+CKFDHPMG+ +Y+  AS LAD P
Sbjct: 308 QIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYN-VASPLADTP 366

Query: 391 VAPYPVGSSIGTLAPSSASSDLRPELISGSSK 422
                +GSS GT A S +S  L   + SG++K
Sbjct: 367 -GRRLLGSSSGTAALSLSSEGL---VESGTAK 394

Pisum sativum (taxid: 3888)

>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa subsp. japonica GN=Os12g0405100 PE=2 SV=1

 Score =  313 bits (802), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 179/412 (43%), Positives = 230/412 (55%), Gaps = 38/412 (9%)

Query: 38  YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYM 97
           YPER  E DC +Y+RTG C +G  C+FNHP +R   + AAR  G E+P RVGQP CQYY+
Sbjct: 63  YPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAVAAARMNG-EYPYRVGQPECQYYL 121

Query: 98  RTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFH 157
           +TGTCK+GA+CK+HHPR+ A   + V LN  GYP+RP EKEC+YY++T QCKF +TCKFH
Sbjct: 122 KTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECAYYLRTGQCKFASTCKFH 181

Query: 158 HPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQY-GVVVARPPLLHGSY 216
           HPQP+            + AV       ++Y P QS + P    Y G V         S+
Sbjct: 182 HPQPSNT----------MVAVRN-----SMYSPGQSATSPGQHTYPGAVTNWTLSRSASF 226

Query: 217 VQGP-------YGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLS 269
           +  P       Y  V+V   +  + GW+PYA  +   SSP    ++ V ++  YG  Q  
Sbjct: 227 IASPRWPGHSGYAQVIVPQGLVQVPGWNPYAAQMGS-SSPDDQQRTPV-TTQYYGSRQSE 284

Query: 270 ASAPAYTGTYQSLPSSVGPSS--SSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHP 327
                  G YQS      P    + Q E+ FPERP Q ECQ+YMKTGDCKFG+ C+FHHP
Sbjct: 285 TGGMGDHGMYQSYQGGSVPVGVYTVQGENIFPERPDQPECQFYMKTGDCKFGAVCKFHHP 344

Query: 328 RELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLA 387
           +E +VP  +  L+  GLPLRPG   CT Y + G+CKFGP CKFDHPMG L Y  + S   
Sbjct: 345 KERLVPAPNCALNSLGLPLRPGEPVCTFYSRYGICKFGPNCKFDHPMGTLMYGSATSPRG 404

Query: 388 DMPVAPYPVGSSIGTLAPSSASSDLRPELISGSSKDSVSTRMSSSVSISSGS 439
           D+    Y        L+PS     +   L+ G S  S     S S  I SG 
Sbjct: 405 DVSSMHY-------QLSPSPGHPGI---LLDGGSGRSHRVPQSDSQQIPSGD 446

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis thaliana GN=ZFN1 PE=1 SV=1

 Score =  306 bits (784), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 157/358 (43%), Positives = 210/358 (58%), Gaps = 36/358 (10%)

Query: 37  SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYY 96
           SYPERP E DC +Y+RTG C +GS CRFNHPRDR  V+  AR  G E+PER+GQP C+YY
Sbjct: 36  SYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRG-EYPERIGQPECEYY 94

Query: 97  MRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKF 156
           ++TGTCK+G +CK+HHPR  AG    VSLN  GYPLR  E +C+Y+++T  CKFG TCKF
Sbjct: 95  LKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKF 154

Query: 157 HHPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSY 216
           +HPQP                 PT +             VP++ Q     +R   +    
Sbjct: 155 NHPQPQ----------------PTNM------------MVPTSGQQSYPWSRASFIASPR 186

Query: 217 VQGP--YGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPA 274
            Q P  Y  +++   +  +QGW+PY+  L  +S  GTG   +  +       +  + +  
Sbjct: 187 WQDPSSYASLIMPQGVVPVQGWNPYSGQLGSVSPSGTGNDQNYRNLQQNETIESGSQSQG 246

Query: 275 YTGTYQ---SLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELI 331
               Y    S+P  +G   +  +E+ FPERPGQ ECQ+YMKTGDCKFG+ C+FHHPR+  
Sbjct: 247 SFSGYNPGSSVP--LGGYYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQ 304

Query: 332 VPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADM 389
            P  D  LS  GLPLRPG   C  Y + G+CKFGP+CKFDHPM + +Y  +AS   ++
Sbjct: 305 APPPDCLLSSIGLPLRPGEPLCVFYTRYGICKFGPSCKFDHPMRVFTYDNTASETDEV 362

Arabidopsis thaliana (taxid: 3702)

>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=Os01g0917400 PE=2 SV=2

 Score =  301 bits (772), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 162/363 (44%), Positives = 216/363 (59%), Gaps = 31/363 (8%)

Query: 38  YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYM 97
           YPER  E DC +Y+RTG C +G  CRFNHP+DR   + +AR  G E+PER+GQP CQYY+
Sbjct: 77  YPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKG-EYPERMGQPECQYYL 135

Query: 98  RTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFH 157
           +TGTCK+G +CK+HHPR+ AG    V LN  GYPLRP EKEC+YY+KT QCK+G TCKFH
Sbjct: 136 KTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKECAYYLKTGQCKYGNTCKFH 195

Query: 158 HPQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYV 217
           HP+                A+ +   +P +YP + S S  +   Y   +A      GS++
Sbjct: 196 HPE-------------LFNAMASSRGSP-IYPSVHS-SATAGPPYTGTMASWAFPRGSFI 240

Query: 218 QGP-------YGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSA 270
             P       Y P++V   +  +  W+ Y   + P+SS  +  QS  G+   YG +Q   
Sbjct: 241 PSPRWQNPSNYAPMIVPQGLVQVPSWNSYTGQMMPVSSSESRLQSP-GAQQTYGTSQQVD 299

Query: 271 SAPAYTGTYQSLPSSV--GPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPR 328
           ++    G      SS    P  + Q+E+ FPERP Q ECQYYMKTGDCKFG+ C+FHHPR
Sbjct: 300 ASAGNQGMLSPYRSSSYPVPQYALQRENVFPERPDQPECQYYMKTGDCKFGAVCKFHHPR 359

Query: 329 ELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDH-----PMGMLSYSPSA 383
              +P  D  LSP GLPLRPG   C  Y + G+CKFG  CKFDH     PMG+ +Y  ++
Sbjct: 360 VRSMPTPDCVLSPVGLPLRPGEELCKFYSRYGICKFGANCKFDHPTMAPPMGVYAYGSAS 419

Query: 384 SSL 386
           +++
Sbjct: 420 TNV 422

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
224107375	456	predicted protein [Populus trichocarpa]	0.943	0.984	0.716	1e-176
224123154	477	predicted protein [Populus trichocarpa]	0.947	0.945	0.705	1e-171
255551693	481	nucleic acid binding protein, putative [	0.934	0.925	0.75	1e-168
449432823	481	PREDICTED: zinc finger CCCH domain-conta	0.930	0.920	0.662	1e-161
147853205	518	hypothetical protein VITISV_003243 [Viti	0.951	0.874	0.717	1e-161
225432344	478	PREDICTED: zinc finger CCCH domain-conta	0.951	0.947	0.717	1e-160
225436765	475	PREDICTED: zinc finger CCCH domain-conta	0.928	0.930	0.622	1e-159
356563888	484	PREDICTED: zinc finger CCCH domain-conta	0.941	0.925	0.677	1e-157
356521891	484	PREDICTED: zinc finger CCCH domain-conta	0.941	0.925	0.675	1e-153
357478675	582	Zinc finger CCCH domain-containing prote	0.953	0.780	0.593	1e-147

>gi|224107375|ref|XP_002314462.1| predicted protein [Populus trichocarpa] gi|222863502|gb|EEF00633.1| predicted protein [Populus trichocarpa]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 333/465 (71%), Positives = 377/465 (81%), Gaps = 16/465 (3%)

Query: 1   MERHGRVSEGSQSDPSPEWTAPGTETGPEG------LGVGAESYPERPDEADCIHYVRTG 54
           M+R+GR  EGSQSDP+ EWT  G ETG E       +G     YPERP+E DC++Y+RTG
Sbjct: 1   MDRYGRGQEGSQSDPAQEWTGSGQETGLEEGVWQLEIGETESEYPERPNEQDCMYYLRTG 60

Query: 55  FCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPR 114
           FC YG+RCR+NHPRDR +V+GAARAGGGEFPERVGQP+CQYYMRTGTCK+GASCKY+HP+
Sbjct: 61  FCGYGARCRYNHPRDRTAVLGAARAGGGEFPERVGQPLCQYYMRTGTCKFGASCKYNHPK 120

Query: 115 QGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQ 174
           QG  SV  VSLNYYGYPLRPGE+EC+YY+KT QCKFGATCKFHHPQPA +  P  S APQ
Sbjct: 121 QGGSSVRPVSLNYYGYPLRPGERECTYYIKTGQCKFGATCKFHHPQPANMQIPAQSLAPQ 180

Query: 175 VAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQ 234
           VA+VP    A  LYP +QSPSVPS+QQYGV+VARPPLL GSYVQGPYGPVL+SPS+    
Sbjct: 181 VASVP----AHTLYPTMQSPSVPSSQQYGVMVARPPLLPGSYVQGPYGPVLLSPSLVPYP 236

Query: 235 GWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQK 294
            WSPY   ++P++SP    Q +VGS S+YGI+ LS SAPAYTG YQS+P++ GPSSSSQK
Sbjct: 237 SWSPYPAPVSPVASPNA--QPAVGSGSVYGISPLSPSAPAYTGAYQSIPTAKGPSSSSQK 294

Query: 295 EHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCT 354
           EH FPERPGQ ECQYYMKTGDCKF SSCR+HHP EL+  K +V LSP GLPLRPGA  CT
Sbjct: 295 EHVFPERPGQPECQYYMKTGDCKFESSCRYHHPPELVTSKTNVVLSPMGLPLRPGAPTCT 354

Query: 355 HYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRP 414
           HY Q G CKFGPACKFDHPMG LSYSPSASSLADMPVAPYPVGSSIGTLAPSS+SSD+R 
Sbjct: 355 HYTQHGQCKFGPACKFDHPMGTLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSDMR- 413

Query: 415 ELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPHSSMQQSG 459
              S  SKDS STR+SSS S  SGSVGS  SKSGP  HSS+Q+SG
Sbjct: 414 ---SKPSKDSSSTRLSSSTSTPSGSVGSKYSKSGPASHSSVQKSG 455

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123154|ref|XP_002330352.1| predicted protein [Populus trichocarpa] gi|222871556|gb|EEF08687.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 328/465 (70%), Positives = 375/465 (80%), Gaps = 14/465 (3%)

Query: 1   MERHGRVSEGSQSDPSPEWTAPGTETGPE------GLGVGAESYPERPDEADCIHYVRTG 54
           M+R+ R  EGSQSDP+ EWT  G ETG E      GLG     YPER +E DC++Y+RTG
Sbjct: 1   MDRYSRGQEGSQSDPALEWTGSGPETGLEEGVWQLGLGETESEYPERSNEQDCMYYLRTG 60

Query: 55  FCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPR 114
           FC YG+RCR+NHPRDR +V+GAARAGG E+PER GQP+CQYYMRTGTCK+GASCKYHHP+
Sbjct: 61  FCGYGARCRYNHPRDRNAVLGAARAGGAEYPERAGQPLCQYYMRTGTCKFGASCKYHHPK 120

Query: 115 QGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQ 174
           QG GS S VSLNYYGYPLRPGE+EC+YY+KT QCKFGATCKFHHPQP  +  P  S APQ
Sbjct: 121 QGGGSASPVSLNYYGYPLRPGERECTYYIKTGQCKFGATCKFHHPQPGNIQIPAQSLAPQ 180

Query: 175 VAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQ 234
           +A    PVP P LYP +QSPSVPS+QQYGV+VARPPLL GSYVQGPYGPVL+SPS+    
Sbjct: 181 IA----PVPGPTLYPSVQSPSVPSSQQYGVMVARPPLLPGSYVQGPYGPVLLSPSVVPYP 236

Query: 235 GWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQK 294
            W+PY   ++P++SP T  Q +VGS S+YG++ LS SAPAYTG +QS+P + GPSSS+QK
Sbjct: 237 SWNPYPAPVSPVASPNT--QPAVGSGSVYGMSALSPSAPAYTGAFQSIPPATGPSSSTQK 294

Query: 295 EHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCT 354
           EH FPERPGQ ECQYY+KTGDCKF SSCR+HHP EL+V K +V LSP GLPLRPGA  C+
Sbjct: 295 EHLFPERPGQPECQYYIKTGDCKFRSSCRYHHPPELVVSKSNVVLSPIGLPLRPGAPTCS 354

Query: 355 HYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRP 414
           HY QRG CKFGPACKFDHPMG LSYSPSASSLADMPVAPY VGSSIGTLAPSS+SSDLR 
Sbjct: 355 HYTQRGQCKFGPACKFDHPMGTLSYSPSASSLADMPVAPYLVGSSIGTLAPSSSSSDLRS 414

Query: 415 ELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPHSSMQQSG 459
           + ISG SKDS ST    S S  SGSVGSI SKSGP PH ++QQSG
Sbjct: 415 KPISGPSKDSSST--RLSTSTPSGSVGSIFSKSGPAPHLNVQQSG 457

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551693|ref|XP_002516892.1| nucleic acid binding protein, putative [Ricinus communis] gi|223543980|gb|EEF45506.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 345/460 (75%), Positives = 380/460 (82%), Gaps = 15/460 (3%)

Query: 1   MERHGRVSEGSQSDPSPEWTAPGTETGPE------GLGVGAESYPERPDEADCIHYVRTG 54
           M+R+GR  EGSQSDPSPEWT PG ET  E      GLG     YPERP+EADCI+Y+RTG
Sbjct: 1   MDRYGRTQEGSQSDPSPEWTGPGPETVLEEGDWQLGLGEVEPGYPERPEEADCIYYLRTG 60

Query: 55  FCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPR 114
           FC YGSRCRFNHPRDRG+V+GAARAG  EFPERVGQPVCQYYMRTGTCK+GASCKYHHP+
Sbjct: 61  FCGYGSRCRFNHPRDRGAVLGAARAGAAEFPERVGQPVCQYYMRTGTCKFGASCKYHHPK 120

Query: 115 QGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQ 174
           QG GS + VSLNYYGYPLRPGEKEC+YY+KT QCKFG TCKFHHPQPA +     SPA Q
Sbjct: 121 QGGGSANPVSLNYYGYPLRPGEKECTYYVKTGQCKFGVTCKFHHPQPANLQIQAQSPALQ 180

Query: 175 VAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQ 234
           VA VP PVPA ALYP +QSPSVPS QQYG+VVARPPLL GSYVQGPYGP+LVSP +    
Sbjct: 181 VAPVPAPVPASALYPNVQSPSVPSTQQYGLVVARPPLLPGSYVQGPYGPMLVSPGVVPYP 240

Query: 235 GWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQK 294
            WSPY   ++P++SP   TQ  VG S +YGITQLS SAPAYTG YQ++     PSSS+QK
Sbjct: 241 SWSPYPGPISPVASP--STQLGVG-SGVYGITQLSPSAPAYTGGYQAM-----PSSSNQK 292

Query: 295 EHP-FPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPC 353
           E P FPERPGQ ECQYYMKTGDCKFGSSC++HHP ELI PK +V LSP GLPLRPGA  C
Sbjct: 293 EQPSFPERPGQPECQYYMKTGDCKFGSSCKYHHPPELIAPKTNVVLSPMGLPLRPGAPHC 352

Query: 354 THYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLR 413
           THY QRG CKFGPACKFDHPMG LSYSPSASSL+DMPVAPYPVGSS+GTLAPSS+SS+LR
Sbjct: 353 THYTQRGQCKFGPACKFDHPMGSLSYSPSASSLSDMPVAPYPVGSSMGTLAPSSSSSELR 412

Query: 414 PELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPHS 453
           PEL+SGSSKDS STRMSSS+S +SG VGSI SKSG V HS
Sbjct: 413 PELVSGSSKDSSSTRMSSSMSTTSGMVGSIFSKSGTVHHS 452

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432823|ref|XP_004134198.1| PREDICTED: zinc finger CCCH domain-containing protein 58-like [Cucumis sativus]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 300/453 (66%), Positives = 353/453 (77%), Gaps = 10/453 (2%)

Query: 1   MERHGRVSEGSQSDPSPEWTAPGTETGPEGLGV------GAESYPERPDEADCIHYVRTG 54
           M+ +G   EGS SDPSPEWT  G +T   G  +        +SYPERPDEADCI+Y+RTG
Sbjct: 1   MKPYGHSIEGSHSDPSPEWTVSGPDTTSHGDSLWPLGSRDRDSYPERPDEADCIYYLRTG 60

Query: 55  FCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPR 114
           FC YGSRCRFNHPR+R   +G +R GG E+PER+GQPVCQYYMRTG CK+GASCKYHHP+
Sbjct: 61  FCGYGSRCRFNHPRERTPALGGSRPGGREYPERIGQPVCQYYMRTGMCKFGASCKYHHPQ 120

Query: 115 QGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQ 174
           Q  GS+S VSLN+YGYPLRPGEKECSYY+K  QCKFGATCKFHHP+PAG+  P PSP  Q
Sbjct: 121 QERGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPV-Q 179

Query: 175 VAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQ 234
           VA +   VPAP++YPP+QSPS  S+QQYGV++ARP LL   YV GPYGP+LVSP +    
Sbjct: 180 VAPIAGQVPAPSVYPPVQSPSAHSSQQYGVILARPSLLSNPYVPGPYGPMLVSPGVVQFP 239

Query: 235 GWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQK 294
            WSPY   ++P++SP    Q SVGS  +YG+  +S SA  + G+YQ +PS+ GPSS+SQK
Sbjct: 240 SWSPYPAPMSPVASPSA--QPSVGSGPLYGMAHVSPSASGFAGSYQPMPST-GPSSTSQK 296

Query: 295 EHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCT 354
           EH FPERPGQ ECQYYM+TGDCKFGSSCR+HHP EL+  +  V LS  GLPLRPGA PCT
Sbjct: 297 EHSFPERPGQPECQYYMRTGDCKFGSSCRYHHPPELVTSRPSVVLSQLGLPLRPGAPPCT 356

Query: 355 HYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLRP 414
           H++QRG+CKFGPACKFDH M  LSYSPSASSLADMPVAPYPVGS  GTLAPSS+SS+LRP
Sbjct: 357 HFMQRGMCKFGPACKFDHSMDRLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRP 416

Query: 415 ELISGSSKDSVSTRMSSSVSISSGSVGSILSKS 447
           E  SGS KDS  +RMSSS+S SSG V S  S++
Sbjct: 417 EHFSGSRKDSNPSRMSSSMSTSSGLVSSTTSRT 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853205|emb|CAN78551.1| hypothetical protein VITISV_003243 [Vitis vinifera]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 336/468 (71%), Positives = 373/468 (79%), Gaps = 15/468 (3%)

Query: 1   MERHGRV--SEGSQSDPSPEWTAPGTETGPE------GLGVGAESYPERPDEADCIHYVR 52
           M+R+GR    EGS SDPS EWT P  ETG E      GLG G E+YPERPDEADCI+Y++
Sbjct: 41  MDRYGRAPAMEGSPSDPSQEWTGPVAETGLEEPLWXLGLGGGGEAYPERPDEADCIYYLK 100

Query: 53  TGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHH 112
           TGFC YG+RCRFNHPRDRG V G  R GGGEFPERVGQPVCQ+YM+TGTCK+GASCKYHH
Sbjct: 101 TGFCGYGARCRFNHPRDRGGVGGTVRPGGGEFPERVGQPVCQFYMKTGTCKFGASCKYHH 160

Query: 113 PRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPA 172
           PRQG G+VS V+LNY+GYPLRPGEKECSYY+KT  CKFG TCKFHHPQP  +   TP PA
Sbjct: 161 PRQGGGTVSPVTLNYFGYPLRPGEKECSYYVKTGLCKFGETCKFHHPQPDSIQLSTPGPA 220

Query: 173 PQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFS 232
              A VP       LYP +QSPSVPS+QQYG+VVARPPLL  SY+ GPY PVL+ P M  
Sbjct: 221 ALPAPVPAHT----LYPXVQSPSVPSSQQYGLVVARPPLLPSSYIHGPYSPVLIPPGMVP 276

Query: 233 LQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSS 292
             GWS Y   ++P++SP T  Q +VGS  +YG+T LS SAPAYTG Y  LPSSVGPSSSS
Sbjct: 277 FPGWSHYPAPVSPVASPST--QPTVGSGQMYGLTPLSPSAPAYTGPYTPLPSSVGPSSSS 334

Query: 293 QKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAP 352
           QKE  FPERPGQ ECQYYM+TGDCKFGSSC++HHP E   PK +  LSP GLPLRPGA  
Sbjct: 335 QKEQIFPERPGQPECQYYMRTGDCKFGSSCKYHHPPEWDTPKTNCVLSPMGLPLRPGAPQ 394

Query: 353 CTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDL 412
           CTHY QRG+CKFGP CKFDHPMG LSYSPSASSLADMPVAPYPVGSS+GTLAPSS+SSDL
Sbjct: 395 CTHYAQRGICKFGPTCKFDHPMGTLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSDL 454

Query: 413 RPELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPHSSMQQSGQ 460
           RPELISGSSK+S+STRMSSS+S SSGSVGSI SKSGP  HSS QQ  Q
Sbjct: 455 RPELISGSSKESLSTRMSSSMSTSSGSVGSIFSKSGPG-HSSTQQPVQ 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432344|ref|XP_002276435.1| PREDICTED: zinc finger CCCH domain-containing protein 32 [Vitis vinifera] gi|297736890|emb|CBI26091.3| unnamed protein product [Vitis vinifera]

 Score =  572 bits (1473), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 336/468 (71%), Positives = 372/468 (79%), Gaps = 15/468 (3%)

Query: 1   MERHGRV--SEGSQSDPSPEWTAPGTETGPE------GLGVGAESYPERPDEADCIHYVR 52
           M+R+GR    EGS SDPS EWT P  ETG E      GLG G E+YPERPDEADCI+Y++
Sbjct: 1   MDRYGRAPAMEGSPSDPSQEWTGPVAETGLEEPLWQLGLGGGGEAYPERPDEADCIYYLK 60

Query: 53  TGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHH 112
           TGFC YG+RCRFNHPRDRG V G  R GGGEFPERVGQPVCQ+YM+TGTCK+GASCKYHH
Sbjct: 61  TGFCGYGARCRFNHPRDRGGVGGTVRPGGGEFPERVGQPVCQFYMKTGTCKFGASCKYHH 120

Query: 113 PRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPA 172
           PRQG G+VS V+LNY+GYPLRPGEKECSYY+KT  CKFG TCKFHHPQP  +   TP PA
Sbjct: 121 PRQGGGTVSPVTLNYFGYPLRPGEKECSYYVKTGLCKFGETCKFHHPQPDSIQLSTPGPA 180

Query: 173 PQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFS 232
              A VP       LYP +QSPSVPS+QQYG+VVARPPLL  SY  GPY PVL+ P M  
Sbjct: 181 ALPAPVPAHT----LYPTVQSPSVPSSQQYGLVVARPPLLPSSYFHGPYSPVLIPPGMVP 236

Query: 233 LQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSS 292
             GWS Y   ++P++SP T  Q +VGS  +YG+T LS SAPAYTG Y  LPSSVGPSSSS
Sbjct: 237 FPGWSHYPAPVSPVASPST--QPTVGSGQMYGLTPLSPSAPAYTGPYTPLPSSVGPSSSS 294

Query: 293 QKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAP 352
           QKE  FPERPGQ ECQYYM+TGDCKFGSSC++HHP E   PK +  LSP GLPLRPGA  
Sbjct: 295 QKEQIFPERPGQPECQYYMRTGDCKFGSSCKYHHPPEWDTPKTNCVLSPMGLPLRPGAPQ 354

Query: 353 CTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDL 412
           CTHY QRG+CKFGP CKFDHPMG LSYSPSASSLADMPVAPYPVGSS+GTLAPSS+SSDL
Sbjct: 355 CTHYAQRGICKFGPTCKFDHPMGTLSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSDL 414

Query: 413 RPELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPHSSMQQSGQ 460
           RPELISGSSK+S+STRMSSS+S SSGSVGSI SKSGP  HSS QQ  Q
Sbjct: 415 RPELISGSSKESLSTRMSSSMSTSSGSVGSIFSKSGPG-HSSTQQPVQ 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436765|ref|XP_002267320.1| PREDICTED: zinc finger CCCH domain-containing protein 32 isoform 1 [Vitis vinifera] gi|296086618|emb|CBI32253.3| unnamed protein product [Vitis vinifera]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 294/472 (62%), Positives = 348/472 (73%), Gaps = 30/472 (6%)

Query: 1   MERHGRV--SEGSQSDPSPEWT----APGTETGPEGLGVGA-ESYPERPDEADCIHYVRT 53
           ME +GR    +GSQSDPS EW+      G E     LG+ + ESYPERP  ADC++Y++T
Sbjct: 1   MELYGRAPARDGSQSDPSVEWSPVRAVSGLEESMWRLGLSSRESYPERPGVADCVYYMKT 60

Query: 54  GFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHP 113
           GFC +GSRCR+NHPRDR SV    R+GGGE+PER+G+P CQ+Y++TGTCK+GASC++HHP
Sbjct: 61  GFCGFGSRCRYNHPRDRSSV-STLRSGGGEYPERIGEPACQFYLKTGTCKFGASCRFHHP 119

Query: 114 RQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAP 173
           R G GS+S+VSLN YGYPLR GEKECSYY+KT QCKFG TCKFHHPQPAG   P      
Sbjct: 120 RNGGGSMSHVSLNIYGYPLRLGEKECSYYLKTGQCKFGITCKFHHPQPAGTSLP------ 173

Query: 174 QVAAVPTPVPAPALYPPLQSPSVPSAQQYGVV-----VARPPLLHGSYVQGPYGPVLVSP 228
                     AP  YP +QSPSVP+  QYG       V RPP+L GSYVQGPYGPVL  P
Sbjct: 174 --------ASAPTFYPTVQSPSVPTPTQYGGTSTSWRVPRPPVLPGSYVQGPYGPVLFPP 225

Query: 229 SMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGP 288
            +  + GWSPY+T ++P+ SPG   Q +VG+ S+YG+TQL  S     G Y SLPSS GP
Sbjct: 226 GVVPIPGWSPYSTPVSPVLSPGA--QPTVGAGSVYGVTQL-PSTHTLAGPYASLPSSAGP 282

Query: 289 SSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRP 348
           SSS+QKE  FPERPGQQECQYY++TGDCKFGSSCR+HHPRE +VPK +  LSP GLPLRP
Sbjct: 283 SSSNQKEQVFPERPGQQECQYYLRTGDCKFGSSCRYHHPREWVVPKTNCVLSPLGLPLRP 342

Query: 349 GAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSA 408
           G  PCT Y+Q G CKFG  CKFDHP+G + YSPSASSL DMPVAPYPVGSS+ TLAPS +
Sbjct: 343 GVQPCTFYLQNGYCKFGSTCKFDHPLGNMRYSPSASSLTDMPVAPYPVGSSLATLAPSFS 402

Query: 409 SSDLRPELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPHSSMQQSGQ 460
           SSDLRP+ ISGS KDS STRM SS + +S SVG I S++G V  S +Q SGQ
Sbjct: 403 SSDLRPDFISGSKKDSHSTRMPSSGNTTSSSVGLIFSQTGSVSLSDVQLSGQ 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563888|ref|XP_003550189.1| PREDICTED: zinc finger CCCH domain-containing protein 58-like [Glycine max]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 311/459 (67%), Positives = 356/459 (77%), Gaps = 11/459 (2%)

Query: 1   MERHGRVSEGSQSDPSPEWT-APGTETGPEG----LGV-GAESYPERPDEADCIHYVRTG 54
           MER+GR SEGSQSDPSPEWT A G + G E     LG+ GAESYP RPDEADCI+Y+RTG
Sbjct: 1   MERYGRASEGSQSDPSPEWTLAAGADAGLEESSWQLGLAGAESYPMRPDEADCIYYLRTG 60

Query: 55  FCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPR 114
           FC YG+RCRFNHPRDR +V+GAA   GGEFPERVGQPVCQY+MRTG CK+G SCKYHHPR
Sbjct: 61  FCGYGTRCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQYFMRTGLCKFGVSCKYHHPR 120

Query: 115 QGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQ 174
           Q AG+ + V LNYYGYPLR  EKECSYY+KT QCKFGATCKFHHPQPAGV A        
Sbjct: 121 QAAGTATPVPLNYYGYPLRVAEKECSYYVKTGQCKFGATCKFHHPQPAGVQA-LAPSPVP 179

Query: 175 VAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQ 234
             +         +YP +Q PS PS QQYGV+VARPP+L GS VQGPYGP++VSP+M    
Sbjct: 180 PVSPLPVPVPSPMYPTVQIPSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFS 239

Query: 235 GWSPY-ATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQ 293
           GWSPY A + NP+  P + T S+ GS+  YGI+QL +S   +TG YQ   SS+GPS +SQ
Sbjct: 240 GWSPYQAPATNPVL-PSSNT-SNAGSTQFYGISQLPSSPATFTGPYQPSGSSIGPSGASQ 297

Query: 294 KEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPC 353
           KEHPFPERP Q EC +YMKTG+CKFG SCR+HHP +   PK  VTLSP GLPLRPGA PC
Sbjct: 298 KEHPFPERPDQPECHHYMKTGECKFGLSCRYHHPPDKSAPKATVTLSPVGLPLRPGAPPC 357

Query: 354 THYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLR 413
           THY QRGVCKFG ACKFDHPMG LSYSPSASSLADMPVAPYPVGSSIGTLAPSS+SS+LR
Sbjct: 358 THYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELR 417

Query: 414 PELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPH 452
           PEL +GS+K+SV++RMSS  + +  SVG  LS  GP+ H
Sbjct: 418 PELGAGSNKESVASRMSSMSTSTG-SVGMTLSSVGPISH 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521891|ref|XP_003529584.1| PREDICTED: zinc finger CCCH domain-containing protein 32-like [Glycine max]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 310/459 (67%), Positives = 353/459 (76%), Gaps = 11/459 (2%)

Query: 1   MERHGRVSEGSQSDPSPEWTAP-----GTETGPEGLGV-GAESYPERPDEADCIHYVRTG 54
           MER+GR SEGSQSDPSPEWT       G E     LG+ GAESYP RPDEADCI+Y+RTG
Sbjct: 1   MERYGRASEGSQSDPSPEWTVAADVDAGLEESSWQLGLPGAESYPMRPDEADCIYYLRTG 60

Query: 55  FCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPR 114
           FC YG+RCRFNHPRDR +V+GAA   GGEFPERVGQPVCQYYMRTG+CK+GASCKYHHPR
Sbjct: 61  FCGYGTRCRFNHPRDRAAVIGAAPRTGGEFPERVGQPVCQYYMRTGSCKFGASCKYHHPR 120

Query: 115 QGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQ 174
           Q  G+ + V LNYYGYPLR G+KECSYY+KT QCKFGATCKFHHPQPAGV          
Sbjct: 121 QVPGTATPVPLNYYGYPLRVGQKECSYYVKTGQCKFGATCKFHHPQPAGVQV-LAPSPVP 179

Query: 175 VAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQ 234
             +         +YP +  PS PS QQYGV+VARPP+L GS VQGPYGP++VSP+M    
Sbjct: 180 PVSPLPVPVPSPMYPTVHPPSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPTMVPFS 239

Query: 235 GWSPY-ATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQ 293
           GWSPY A + NP+    + T S+VGS+ +YGITQL +SA  YTG YQ   SS+GPS +SQ
Sbjct: 240 GWSPYQAPATNPLLP--SSTTSNVGSTQLYGITQLPSSAATYTGPYQPSGSSIGPSGASQ 297

Query: 294 KEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPC 353
           KEHPFPERP Q EC +YMKTGDCKFG  CR+HHP +   PK +VTLSP GLPLRPGA PC
Sbjct: 298 KEHPFPERPDQPECHHYMKTGDCKFGPLCRYHHPPDKSAPKANVTLSPVGLPLRPGAPPC 357

Query: 354 THYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLAPSSASSDLR 413
           THY QRGVCKFG ACKFDHPMG LSYSPSASSLADMPVAPYPVGSSIGTLA SS SS+LR
Sbjct: 358 THYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLALSSLSSELR 417

Query: 414 PELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPH 452
           PEL +GS+K+SV++RMSS  + +  SVG  LS  GP+ H
Sbjct: 418 PELGAGSNKESVASRMSSMSTSTG-SVGLTLSSVGPISH 455

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478675|ref|XP_003609623.1| Zinc finger CCCH domain-containing protein [Medicago truncatula] gi|355510678|gb|AES91820.1| Zinc finger CCCH domain-containing protein [Medicago truncatula]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 321/541 (59%), Positives = 365/541 (67%), Gaps = 87/541 (16%)

Query: 3   RHGRVSEGS---QSDPSPEWTAPGT-ETGPEGLGVGAESYPERPDEADCIHYVRTGFCAY 58
           R+GR ++GS    SDPSPEWT+ G  E     +G G ESYP+RPDEADCI+Y+RTGFC Y
Sbjct: 4   RYGRANDGSSQLHSDPSPEWTSVGADEGYGGLVGGGGESYPQRPDEADCIYYLRTGFCGY 63

Query: 59  GSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG 118
           GSRCRFNHPRDRG+V+GAAR  G E+PERVGQPVCQYY RTG+CK+GASCKYHHPRQ AG
Sbjct: 64  GSRCRFNHPRDRGAVIGAARIAG-EYPERVGQPVCQYYARTGSCKFGASCKYHHPRQAAG 122

Query: 119 SVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPTPSPAPQVAAV 178
           +   VSLN YGYPLR GEKECSYY+KT QCKFGATCKFHHPQPAG     PSP PQV+ +
Sbjct: 123 TTPPVSLNCYGYPLRVGEKECSYYVKTGQCKFGATCKFHHPQPAGGQMIAPSPVPQVSPL 182

Query: 179 PTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSP 238
           P PVP+P +Y  +Q PS PS QQYGV+VARPPLLHGS+VQGPYGP+++SP+M    GWSP
Sbjct: 183 PMPVPSP-IYQTVQPPSGPSQQQYGVLVARPPLLHGSFVQGPYGPMVMSPTMVPFSGWSP 241

Query: 239 YATSLNPISSPGTGTQS--SVGSSSIYGITQLSASAPAYT-------------------- 276
           Y     P  SP   + +  SVGS+ +YGITQL +   AYT                    
Sbjct: 242 YQA---PAGSPVLPSSNPLSVGSTQLYGITQLPSPTTAYTQLPSPTTAYTGPYQSSGPSA 298

Query: 277 ----------GTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHH 326
                     G YQS   S GPS SSQKEH  PERP QQECQ+YMKTGDCKFGS+CR+HH
Sbjct: 299 GPYQSSGPSAGPYQSSGPSTGPSGSSQKEHSLPERPDQQECQHYMKTGDCKFGSTCRYHH 358

Query: 327 PRELIVPKMDVTLSPFGLPLRP-------------------------------------- 348
           P ++  PK  V LSP GLPLRP                                      
Sbjct: 359 PPDMGAPK--VNLSPIGLPLRPLMLFRCILLHASTKPHIILTWLFVFIDLFGFISPLMQY 416

Query: 349 ------GAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGT 402
                 GA PCTHY QRG CKFG ACKFDHP G LSYSPSASSL+DMPVAPYPVGS+IGT
Sbjct: 417 FVFGLQGAQPCTHYTQRGFCKFGSACKFDHPTGSLSYSPSASSLSDMPVAPYPVGSAIGT 476

Query: 403 LAPSSASSDLRPELISGSSKDSVSTRMSSSVSISSGSVGSILSKSGPVPHSSMQQSGQSS 462
           LAPSS+SS+LRPEL SGSSK+  S+RMSSS+S S+ S G  LS   PV  S  Q S QSS
Sbjct: 477 LAPSSSSSELRPELASGSSKEPASSRMSSSMSTSTASAGLTLSTVVPVSQSDAQPSSQSS 536

Query: 463 G 463
           G
Sbjct: 537 G 537

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	476
TAIR|locus:2081066	462	AT3G06410 [Arabidopsis thalian	0.462	0.476	0.551	3e-127
TAIR|locus:2182988	465	AT5G18550 [Arabidopsis thalian	0.838	0.858	0.571	1.1e-124
TAIR|locus:2043368	468	AT2G47850 [Arabidopsis thalian	0.447	0.455	0.521	2.6e-115
TAIR|locus:2075477	397	ZFN1 "zinc finger protein 1" [	0.254	0.304	0.614	5.8e-80
TAIR|locus:2171407	375	ZFN3 "zinc finger nuclease 3"	0.264	0.336	0.578	4.1e-75
TAIR|locus:2010562	404	AT1G04990 [Arabidopsis thalian	0.264	0.311	0.5	1.6e-61
TAIR|locus:2101170	448	AT3G48440 [Arabidopsis thalian	0.254	0.270	0.455	6.1e-54
TAIR|locus:2087775	524	HUA1 "ENHANCER OF AG-4 1" [Ara	0.247	0.225	0.460	4.5e-51
TAIR|locus:1006230718	82	AT1G48195 [Arabidopsis thalian	0.163	0.951	0.512	7e-22
ASPGD|ASPL0000062209	254	AN0298 [Emericella nidulans (t	0.138	0.259	0.342	8.8e-06

TAIR|locus:2081066 AT3G06410 [Arabidopsis thaliana (taxid:3702)]

 Score = 649 (233.5 bits), Expect = 3.0e-127, Sum P(2) = 3.0e-127
 Identities = 128/232 (55%), Positives = 154/232 (66%)

Query:   191 LQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLV-SPSMFSLQGWSPYATSLNPIXXX 249
             LQS S+PS+QQYG+V+ RP  L GSY+Q PYGP +V  P M    GW+PY  SL+ +   
Sbjct:   204 LQSQSIPSSQQYGLVLTRPSFLTGSYLQSPYGPPMVLPPGMVPYSGWNPYQASLSAMPSP 263

Query:   250 XXXXXXXXXXXXIYGITQLSASAPAYTGTYQXXXXXXXXXXXXQKEHPFPERPGQQECQY 309
                         IYG+T LS SA AYTGTYQ             KE  FP+RP Q ECQY
Sbjct:   264 GTQPSIGSSS--IYGLTPLSPSATAYTGTYQSVPSSNSTS----KE--FPQRPDQPECQY 315

Query:   310 YMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACK 369
             +M+TGDCKFGSSCR+HHP + + PK  + LS  GLPLRPG A CTH+ Q G+CKFGPACK
Sbjct:   316 FMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHFAQHGICKFGPACK 375

Query:   370 FDHPMGM-LSYSPSASSLADMPVAPYPVGSSI--GTLAPSSASSDLRPELIS 418
             FDH M   LSYSPSASSL DMPVAPYP+GSS   G+ AP S+S++   E ++
Sbjct:   376 FDHSMSSSLSYSPSASSLTDMPVAPYPIGSSSLSGSSAPVSSSNEPTKEAVT 427

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2182988 AT5G18550 [Arabidopsis thaliana (taxid:3702)]

 Score = 1225 (436.3 bits), Expect = 1.1e-124, P = 1.1e-124
 Identities = 248/434 (57%), Positives = 288/434 (66%)

Query:     1 MERHGRVSEG-SQSDPSPEWTAPGTETGPE------GL---GVGAESYPERPDEADCIHY 50
             MER+G   E  S+SDPS EW+A GTETG E      GL   G G E++PERPDE DCI+Y
Sbjct:     1 MERYGGAGEDESRSDPSHEWSAQGTETGIEASMWRLGLRGGGGGGETFPERPDEPDCIYY 60

Query:    51 VRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKY 110
             +RTG C YGSRCRFNHPR+R  V+G  R   GEFPER+GQPVCQ++MRTGTCK+GASCKY
Sbjct:    61 LRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQHFMRTGTCKFGASCKY 120

Query:   111 HHPRQGAG--SVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHXXXXXXXXXX 168
             HHPRQG G  SV+ VSLNY G+PLRPGEKECSY+M+T QCKFG+TC++HH          
Sbjct:   121 HHPRQGGGGDSVTPVSLNYMGFPLRPGEKECSYFMRTGQCKFGSTCRYHHPVPPGVQAPS 180

Query:   169 XXXXXXXXXXXXXXXXXXXXXXLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYG--PVLV 226
                                   LQS +VPS+QQYGVV+ARP LL GSYVQ PYG   +++
Sbjct:   181 QQQQQQLSAGPTMYPS------LQSQTVPSSQQYGVVLARPQLLPGSYVQSPYGYGQMVL 234

Query:   227 SPSMFSLQGWSPYATSLNPIXXXXXXXXXXXXXXXIYGITQLSASAPAYTGTYQXXXXXX 286
              P M    GW+PY  S++ +               +YGIT LS SAPAY           
Sbjct:   235 PPGMVPYSGWNPYQASVSAMPSPGTQPSMGTSS--VYGITPLSPSAPAYQS-------GP 285

Query:   287 XXXXXXQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPL 346
                    KE  FP+RP Q ECQY+M+TGDCKFG+SCRFHHP E   P+   TLS  GLPL
Sbjct:   286 SSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEAS-TLSHIGLPL 344

Query:   347 RPGAAPCTHYVQRGVCKFGPACKFDHPMGM--LSYSPSASSLADMPVAPYPVGSSIGTLA 404
             RPGA PCTH+ Q G+CKFGPACKFDH +G   LSYSPS SSL DMPVAPYP  SS+GTLA
Sbjct:   345 RPGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSPSSLTDMPVAPYP--SSLGTLA 402

Query:   405 PSSASSDLRPELIS 418
             PSS SSD   ELIS
Sbjct:   403 PSS-SSDQCTELIS 415

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2043368 AT2G47850 [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.6e-115, Sum P(2) = 2.6e-115
 Identities = 119/228 (52%), Positives = 149/228 (65%)

Query:   194 PSVPSAQ--QYG-----VVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNPI 246
             PSV S    QYG     + VAR  LL GSY+QG YGP+L++P +  + GWSPY+  ++P 
Sbjct:   181 PSVQSLMPDQYGGPSSSLRVART-LLPGSYMQGAYGPMLLTPGVVPIPGWSPYSAPVSP- 238

Query:   247 XXXXXXXXXXXXXXXIYGITQLSASAPAYTGTYQXXXXXXXXXXXXQKEHPFPERPGQQE 306
                            +YG+TQL+++ P+  G Y             QKE  FPERPG+ E
Sbjct:   239 -ALSPGAQHAVGATSLYGVTQLTSTTPSLPGVYPSLSSPTGVI---QKEQAFPERPGEPE 294

Query:   307 CQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGP 366
             CQYY+KTGDCKFG+SC+FHHPR+ + P+ +  LSP GLPLRPG   CT YVQ G CKFG 
Sbjct:   295 CQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYVQNGFCKFGS 354

Query:   367 ACKFDHPMGMLSYSPSASSLADMPVAPYPVGSSIGTLA--PSSASSDL 412
              CKFDHPMG + Y+PSASSLAD PVAPYPV S +G LA  PSS+S++L
Sbjct:   355 TCKFDHPMGTIRYNPSASSLADAPVAPYPVSSLLGALAAAPSSSSTEL 402

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2075477 ZFN1 "zinc finger protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 460 (167.0 bits), Expect = 5.8e-80, Sum P(2) = 5.8e-80
 Identities = 75/122 (61%), Positives = 93/122 (76%)

Query:    37 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYY 96
             SYPERP E DC +Y+RTG C +GS CRFNHPRDR  V+  AR  G E+PER+GQP C+YY
Sbjct:    36 SYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDRELVIATARMRG-EYPERIGQPECEYY 94

Query:    97 MRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKF 156
             ++TGTCK+G +CK+HHPR  AG    VSLN  GYPLR  E +C+Y+++T  CKFG TCKF
Sbjct:    95 LKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYFLRTGHCKFGGTCKF 154

Query:   157 HH 158
             +H
Sbjct:   155 NH 156

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0010313 "phytochrome binding" evidence=IPI

GO:0017148 "negative regulation of translation" evidence=IMP

GO:0048027 "mRNA 5'-UTR binding" evidence=IPI

TAIR|locus:2171407 ZFN3 "zinc finger nuclease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 445 (161.7 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
 Identities = 74/128 (57%), Positives = 95/128 (74%)

Query:    31 LGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQ 90
             +GV   SYPER  E DC +Y+RTG C +GS CRFNHP DR  V+  AR  G E+PER+GQ
Sbjct:    33 MGVDG-SYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKG-EYPERIGQ 90

Query:    91 PVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKF 150
             P C++Y++TGTCK+G +CK+HHPR  AG   +VS+N   YPLRP E +CSY+++  QCKF
Sbjct:    91 PECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYFLRIGQCKF 150

Query:   151 GATCKFHH 158
             G TCKF+H
Sbjct:   151 GGTCKFNH 158

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=TAS

GO:0004518 "nuclease activity" evidence=TAS

TAIR|locus:2010562 AT1G04990 [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
 Identities = 67/134 (50%), Positives = 84/134 (62%)

Query:    25 ETGPEGLGVGAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEF 84
             ETG E L      YP+RP E DC  Y+RTG C YGS CR+NHP      +   +    E 
Sbjct:    35 ETGVEELN----PYPDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKE---EL 87

Query:    85 PERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMK 144
             PER+GQP C+Y+++TG CKYG +CKYHHP+   G+   V  N  G P+R GEK C YY++
Sbjct:    88 PERIGQPDCEYFLKTGACKYGPTCKYHHPKDRNGA-QPVMFNVIGLPMRLGEKPCPYYLR 146

Query:   145 TRQCKFGATCKFHH 158
             T  C+FG  CKFHH
Sbjct:   147 TGTCRFGVACKFHH 160

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007623 "circadian rhythm" evidence=RCA

TAIR|locus:2101170 AT3G48440 [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 56/123 (45%), Positives = 74/123 (60%)

Query:    38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPE--RVGQPVCQY 95
             YP RP   DC  Y+RTG C +GS C+FNHP  R   +        +  +  ++G   C+Y
Sbjct:   107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKLGLIDCKY 166

Query:    96 YMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCK 155
             Y RTG CKYG +C+++H    +G  S   LN+ G PLRPGE EC YYM+   CK+GA CK
Sbjct:   167 YFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGAECK 226

Query:   156 FHH 158
             F+H
Sbjct:   227 FNH 229

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2087775 HUA1 "ENHANCER OF AG-4 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 4.5e-51, Sum P(2) = 4.5e-51
 Identities = 58/126 (46%), Positives = 79/126 (62%)

Query:    38 YPERPDEADCIHYVRTGFCAYGSRCRFNHPR--DRGSVMGAARAG---GGEFPERVGQPV 92
             YP+R  E DC HY++T  C +G  CRF+HP     G +     A      E+PER G+P 
Sbjct:   171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPERPGEPD 230

Query:    93 CQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGA 152
             C YY++T  CKYG+ CK++HPR+ A +VS  + +    P RP E  C++YMKT +CKFG 
Sbjct:   231 CPYYIKTQRCKYGSKCKFNHPREEA-AVSVETQD--SLPERPSEPMCTFYMKTGKCKFGL 287

Query:   153 TCKFHH 158
             +CKFHH
Sbjct:   288 SCKFHH 293

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0003723 "RNA binding" evidence=ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:1006230718 AT1G48195 [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 40/78 (51%), Positives = 54/78 (69%)

Query:   295 EHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCT 354
             E  FPERPG+ EC YY++TG+C    +C++HHP+ +   +   TL+  GLPLRPG A C 
Sbjct:     3 EEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAICP 62

Query:   355 HYVQRGVCKFGPACKFDH 372
             HY + G+C+ GP CKFDH
Sbjct:    63 HYSRFGICRSGPTCKFDH 80

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

ASPGD|ASPL0000062209 AN0298 [Emericella nidulans (taxid:162425)]

 Score = 87 (35.7 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
 Identities = 26/76 (34%), Positives = 33/76 (43%)

Query:   306 ECQYYMKTGDCKFGSSCRFHHPRELI-VPKMDVTLSPFGLPLRPGAAP-------CTHYV 357
             ECQ + ++G C  G  C + H RE   +P  +     F  PL P  A        C +YV
Sbjct:   119 ECQSFSRSGYCPNGDDCLYQHVREQARLPPCEHYDQGF-CPLGPLCAKRHVRRRLCPYYV 177

Query:   358 QRGVCKFGPACKFDHP 373
               G C  GP C   HP
Sbjct:   178 A-GFCPEGPNCANAHP 192

GO:0006379 "mRNA cleavage" evidence=IEA

GO:0006378 "mRNA polyadenylation" evidence=IEA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5NAW2	C3H6_ORYSJ	No assigned EC number	0.5373	0.8319	0.8319	yes	no
Q6NPN3	C3H58_ARATH	No assigned EC number	0.5813	0.9390	0.9612	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	476
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-08
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	4e-08
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	3e-07
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	2e-06
smart00356	27	smart00356, ZnF_C3H1, zinc finger	7e-05
pfam00642	27	pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H t	9e-05
smart00356	27	smart00356, ZnF_C3H1, zinc finger	7e-04
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.001
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.003

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 49.1 bits (118), Expect = 2e-08
 Identities = 12/26 (46%), Positives = 18/26 (69%)

Query: 89  GQPVCQYYMRTGTCKYGASCKYHHPR 114
              +C+++ RTGTCKYG  CK+ H +
Sbjct: 2   KTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 302 PGQQECQYYMKTGDCKFGSSCRFHHPR 328
              + C+++ +TG CK+G  C+F H +
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 134 PGEKECSYYMKTRQCKFGATCKFHHPQ 160
              + C ++ +T  CK+G  CKF H Q
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 42 PDEADCIHYVRTGFCAYGSRCRFNHPR 68
               C  + RTG C YG RC+F H +
Sbjct: 1  YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 39.5 bits (93), Expect = 7e-05
 Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 89  GQPVCQYYMRTGTCKYGASCKYHHPR 114
              +C+++ + G C  G  CK+ HP 
Sbjct: 3   KTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|144294 pfam00642, zf-CCCH, Zinc finger C-x8-C-x5-C-x3-H type (and similar)

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 348 PGAAPCTHYVQRGVCKFGPACKFDHPM 374
                C  + + G CK+G  CKF H  
Sbjct: 1   YKTELCRFFSRTGTCKYGDRCKFAHGQ 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 36.5 bits (85), Expect = 7e-04
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 301 RPGQQECQYYMKTGDCKFGSSCRFHHPR 328
           +   + C+++ K G C  G  C+F HP 
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 347 RPGAAPCTHYVQRGVCKFGPACKFDHPM 374
           +     C  + +RG C  G  CKF HP+
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHPL 27

Length = 27

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)

Query: 133 RPGEKECSYYMKTRQCKFGATCKFHHP 159
           +   + C ++ K   C  G  CKF HP
Sbjct: 1   KYKTELCKFF-KRGYCPRGDRCKFAHP 26

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	476
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.93
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	99.5
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.38
KOG1040	325	consensus Polyadenylation factor I complex, subuni	99.24
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	99.18
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	99.15
KOG1492	377	consensus C3H1-type Zn-finger protein [General fun	99.09
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.64
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.59
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	98.5
KOG4791	667	consensus Uncharacterized conserved protein [Funct	98.48
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	98.46
KOG2494	331	consensus C3H1-type Zn-finger protein [Transcripti	98.35
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.32
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	98.24
KOG2333	614	consensus Uncharacterized conserved protein [Gener	98.06
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	97.81
KOG4791	667	consensus Uncharacterized conserved protein [Funct	97.81
smart00356	27	ZnF_C3H1 zinc finger.	97.68
smart00356	27	ZnF_C3H1 zinc finger.	97.67
KOG1763	343	consensus Uncharacterized conserved protein, conta	97.43
KOG1763	343	consensus Uncharacterized conserved protein, conta	97.36
KOG2333	614	consensus Uncharacterized conserved protein [Gener	97.0
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	96.89
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	96.66
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.18
KOG2185	486	consensus Predicted RNA-processing protein, contai	96.05
COG5252	299	Uncharacterized conserved protein, contains CCCH-t	96.04
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	95.84
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.84
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	95.78
COG5152	259	Uncharacterized conserved protein, contains RING a	95.11
COG5152	259	Uncharacterized conserved protein, contains RING a	94.09
KOG3702	681	consensus Nuclear polyadenylated RNA binding prote	91.19
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	91.1
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	88.86
KOG2202	260	consensus U2 snRNP splicing factor, small subunit,	88.33
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	88.23
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	87.4
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	83.18
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	81.15

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.93  E-value=2.8e-25  Score=225.85  Aligned_cols=277  Identities=38%  Similarity=0.732  Sum_probs=184.8

Q ss_pred             CCCCCCCCCCCCCCCCCCccccCC------CCCCCCCCCCCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCC
Q 011853           10 GSQSDPSPEWTAPGTETGPEGLGV------GAESYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGE   83 (476)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~e~~~------~~~~yp~Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~   83 (476)
                      ...++...+|.............+      ....|++++...+|.+|.+++.|.++..|+|+|+..+.+.....+.....
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~p~~~~~~~~~~~~~~~~  125 (332)
T KOG1677|consen   46 STRSDNSKQPSELAAEDSSPGTELEQLRTPGSSPYPERSGEGDCSAYLRTGVCGYGSSCRYNHPDLRLRPRPVRRSRGER  125 (332)
T ss_pred             CcccccccCcccccccccCcccccchhcccccCcCCCCCCccccccccccCCCCCCCCCCccCcccccccCCcccccccc
Confidence            345666777776533233322222      34569999998999999999999999999999997444332221234458


Q ss_pred             CCCCCCCcCcccccccCCCCC-CCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCC
Q 011853           84 FPERVGQPVCQYYMRTGTCKY-GASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA  162 (476)
Q Consensus        84 ~Per~ktp~C~~flrtG~Ck~-G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~  162 (476)
                      .|++.++++|++|.++|.|+| |++|+|+|...+.+...  .++..+++.+.++++|.+|+++|.|+||.+|+|.|+...
T Consensus       126 ~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~  203 (332)
T KOG1677|consen  126 KPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFIHGEPE  203 (332)
T ss_pred             CcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeecCCCcc
Confidence            899999999999999999999 99999999998774222  346678889999999999999999999999999999875


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCC-CCCCCCcccccCCccccCCCCCCCCc
Q 011853          163 GVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGS-YVQGPYGPVLVSPSMFSLQGWSPYAT  241 (476)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~~~~~r~~~~p~s-~~~~~y~p~~~~~g~vp~~~w~~y~~  241 (476)
                      .......                . + .+..  .+..++|+....|+.+.... .++.+|.+..++++++|  .|.    
T Consensus       204 ~~~~~~~----------------~-~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~----  257 (332)
T KOG1677|consen  204 DRASNRH----------------P-Y-PVSR--NPQPQSYGLTASRSSLLNQQSKLQQPFAPSGLSESVLP--RSS----  257 (332)
T ss_pred             ccccccC----------------C-c-cccc--cccccccchhhcchhhccccccccccccccccccccCc--CCc----
Confidence            4432110                0 1 1111  33445565444444443222 33334444334555555  110    


Q ss_pred             CCCCCCCCCCCCccCCCcccccccccCCCCCCCCCCccccCCCCCCCC--CCCCCCCCCCCCCCcccccccccCCCCCCC
Q 011853          242 SLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPS--SSSQKEHPFPERPGQQECQYYMKTGDCKFG  319 (476)
Q Consensus       242 ~~~p~~s~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~s~~~P~--~~~~k~~~~p~rp~~~~C~yy~k~G~Ck~G  319 (476)
                                  ++.+.....+      ..            ....+.  ....+++.+++++.+++|.+ |++|     
T Consensus       258 ------------~~~~~~~~~~------~~------------~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~-----  301 (332)
T KOG1677|consen  258 ------------QQNLLPQGLR------SS------------SSSHPSGSQENVNENGFRARPEQPECRS-MKSG-----  301 (332)
T ss_pred             ------------cccccccccc------cc------------cccccccchhccccccCcCCCCCCccch-hccc-----
Confidence                        0000000000      00            000011  12345677899999999999 9988     


Q ss_pred             CCCCCCCCCCccCCCCCcccCCCCCCCCCCCccCccccccCCCCCCCCCCC
Q 011853          320 SSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKF  370 (476)
Q Consensus       320 ~~Ckf~Hp~~~~~~~~~~~l~~~g~p~Rpg~~~C~~y~~~G~Ck~G~~Crf  370 (476)
                              .++.            +++|++...|.+|..+|+|+||..|+|
T Consensus       302 --------~~~l------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (332)
T KOG1677|consen  302 --------ENRL------------LPLRPGPGACTLFSRYGSCKFGPLCKF  332 (332)
T ss_pred             --------cccc------------cCCCCCcccccccccccccCCCCcCCC
Confidence                    1111            789999999999999999999999997

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=99.50  E-value=1.7e-13  Score=139.72  Aligned_cols=83  Identities=28%  Similarity=0.626  Sum_probs=70.0

Q ss_pred             CCCCCCCCCCCCcCCcchhccCCCCC-CCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCC
Q 011853           33 VGAESYPERPDEADCIHYVRTGFCAY-GSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYH  111 (476)
Q Consensus        33 ~~~~~yp~Rpgt~~C~~f~rtG~C~~-Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~  111 (476)
                      ......|++.++++|.+|.++|.|+| |++|+|+|..++.+...  ......++.++|+++|.+|+++|.|+||.+|+|+
T Consensus       121 ~~~~~~p~~~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r~~~--~~~~~~~~~~~kt~lC~~f~~tG~C~yG~rC~F~  198 (332)
T KOG1677|consen  121 SRGERKPERYKTPLCRSFRKSGTCKYRGEQCRFAHGLEELRLPS--SENQVGNPPKYKTKLCPKFQKTGLCKYGSRCRFI  198 (332)
T ss_pred             cccccCcccccCCcceeeecCccccccCchhhhcCCcccccccc--cchhhcCCCCCCCcCCCccccCCCCCCCCcCeec
Confidence            35678899999999999999999999 99999999999875211  0111256678999999999999999999999999


Q ss_pred             CCCCCC
Q 011853          112 HPRQGA  117 (476)
Q Consensus       112 H~~~~~  117 (476)
                      |...+.
T Consensus       199 H~~~~~  204 (332)
T KOG1677|consen  199 HGEPED  204 (332)
T ss_pred             CCCccc
Confidence            998865

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.38  E-value=5.6e-13  Score=136.25  Aligned_cols=66  Identities=21%  Similarity=0.127  Sum_probs=40.2

Q ss_pred             ccccccccCCCCCCCCC-CCCCCCCCccCCCCCcccCCCCCCCCCCCccCccccccCCCCCCCCCCCCCCC
Q 011853          305 QECQYYMKTGDCKFGSS-CRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPM  374 (476)
Q Consensus       305 ~~C~yy~k~G~Ck~G~~-Ckf~Hp~~~~~~~~~~~l~~~g~p~Rpg~~~C~~y~~~G~Ck~G~~Crf~Hp~  374 (476)
                      +.|..|+ .|.|..|.+ |.+.|+.-.....-  .+..-.-+.|.++.++.+| -...|.....|++.+.-
T Consensus       159 ~~c~~y~-~gfC~~g~q~c~~~hp~~~~~~~~--~~~~q~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~~  225 (325)
T KOG1040|consen  159 VLCPPYN-AGFCPKGPQRCDMLHPEFQQPPFH--QGSVQHPPQRQSQQPGKIS-GEEKIHKLLQDKQLPQQ  225 (325)
T ss_pred             cCCCchh-hhhccCCCCcccccCCCCCCChhh--ccccCCCCCCCCcCccccc-cccccchhhhhhhhhHH
Confidence            5667777 688888877 88888543222110  0111122455667777777 56677777778887754

>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]

Probab=99.24  E-value=8e-12  Score=127.85  Aligned_cols=98  Identities=24%  Similarity=0.593  Sum_probs=75.2

Q ss_pred             cCCCCCCCC--CCCCCcCCcchhcc-CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCC
Q 011853           31 LGVGAESYP--ERPDEADCIHYVRT-GFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGAS  107 (476)
Q Consensus        31 ~~~~~~~yp--~Rpgt~~C~~f~rt-G~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~  107 (476)
                      .++....+.  .+-+...|.++.+. -.|.+|..|.+.|...+               ...+..+|+||++ |.|++|+.
T Consensus        30 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~vcK~~l~-glC~kgD~   93 (325)
T KOG1040|consen   30 PGASLAPFRVRDESGRATCEFNESREKPCERGPICPKSHNDVS---------------DSRGKVVCKHWLR-GLCKKGDQ   93 (325)
T ss_pred             ccccccccccccccccchhcccccCCCCccCCCCCccccCCcc---------------ccCCceeehhhhh-hhhhccCc
Confidence            344333443  33346889988631 47889999999998653               1136789999999 99999999


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853          108 CKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP  161 (476)
Q Consensus       108 CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~  161 (476)
                      |-|+|..+..                 +.++|.||..+|.|.++.+|.|.|..+
T Consensus        94 C~Flhe~~~~-----------------k~rec~ff~~~g~c~~~~~c~y~h~dp  130 (325)
T KOG1040|consen   94 CEFLHEYDLT-----------------KMRECKFFSLFGECTNGKDCPYLHGDP  130 (325)
T ss_pred             Ccchhhhhhc-----------------ccccccccccccccccccCCcccCCCh
Confidence            9999987532                 335899999999999999999999884

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=99.18  E-value=1.3e-11  Score=119.39  Aligned_cols=80  Identities=26%  Similarity=0.752  Sum_probs=60.9

Q ss_pred             CCCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCC
Q 011853           42 PDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVS  121 (476)
Q Consensus        42 pgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~  121 (476)
                      |....|+||..+|.|.+|..|+|.|...+.                   .+|..|+. |.|.+.+.|...|..+..    
T Consensus       204 psavycryynangicgkgaacrfvheptrk-------------------ticpkfln-grcnkaedcnlsheldpr----  259 (377)
T KOG1492|consen  204 PSAVYCRYYNANGICGKGAACRFVHEPTRK-------------------TICPKFLN-GRCNKAEDCNLSHELDPR----  259 (377)
T ss_pred             CceeEEEEecCCCcccCCceeeeecccccc-------------------ccChHHhc-CccCchhcCCcccccCcc----
Confidence            345668888888888888888888875542                   36888888 888888888888877643    


Q ss_pred             ccccCCCCCCCCCCccccccccccccCCCCCCCccCCCC
Q 011853          122 NVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQ  160 (476)
Q Consensus       122 ~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~  160 (476)
                                   .-+.|+||+- |.|. ..+|||.|..
T Consensus       260 -------------ripacryfll-gkcn-npncryvhih  283 (377)
T KOG1492|consen  260 -------------RIPACRYFLL-GKCN-NPNCRYVHIH  283 (377)
T ss_pred             -------------ccchhhhhhh-ccCC-CCCceEEEEe
Confidence                         1247888887 8886 6788888865

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=99.15  E-value=4.4e-11  Score=120.96  Aligned_cols=218  Identities=20%  Similarity=0.380  Sum_probs=116.6

Q ss_pred             CcCcccccccCCCCCCCC-CCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCCCCCCCC
Q 011853           90 QPVCQYYMRTGTCKYGAS-CKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVPAPT  168 (476)
Q Consensus        90 tp~C~~flrtG~Ck~G~~-CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~~~~~~~  168 (476)
                      -.+||.|+| |.|++|++ |||.|+.....    |+.+        +-..|..|+| |.|. .++|||.|+....+....
T Consensus        37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~~~----V~~g--------~v~aC~Ds~k-grCs-R~nCkylHpp~hlkdql~  101 (331)
T KOG2494|consen   37 LEVCREFLR-NTCSRGDRECKFAHPPKNCQ----VSNG--------RVIACFDSQK-GRCS-RENCKYLHPPQHLKDQLK  101 (331)
T ss_pred             HHHHHHHHh-ccccCCCccccccCCCCCCC----ccCC--------eEEEEecccc-CccC-cccceecCCChhhhhhhh
Confidence            358999999 99999999 99999987432    2111        2257999999 9998 577999999887766543


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCccccc---CCccccCCCCCCCCcCCC-
Q 011853          169 PSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLV---SPSMFSLQGWSPYATSLN-  244 (476)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~~~~~r~~~~p~s~~~~~y~p~~~---~~g~vp~~~w~~y~~~~~-  244 (476)
                      ..           .+...+++...-+++..+.+.          ||-.+.+  .|++-   --+-++.-.+++|+.++. 
T Consensus       102 in-----------grn~l~lq~~~aA~~~q~~~~----------~g~Pi~~--v~~f~~~~~~~g~~~~s~~~y~~~~Pg  158 (331)
T KOG2494|consen  102 IN-----------GRNNLILQKTAAAMLAQQMQG----------PGTPICS--VPMFATGPCLGGNTACSYWPYLPPVPG  158 (331)
T ss_pred             hc-----------ccccHHHHHHHHhhhcccccC----------CCccccc--cccccccccccCCCccccccccCCCCC
Confidence            20           111122222111222223232          1111111  11110   012233445555555330 


Q ss_pred             CCCCCCCCCccCCCcccccccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCC-CC
Q 011853          245 PISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSS-CR  323 (476)
Q Consensus       245 p~~s~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~s~~~P~~~~~k~~~~p~rp~~~~C~yy~k~G~Ck~G~~-Ck  323 (476)
                      .....+     .+....+|.               ...+.+..|...  -+......+..++|+- . .|.|..++. |+
T Consensus       159 ~~vp~~-----~~p~~~~~~---------------~g~p~v~~~~~~--~~~k~~r~~~~e~~~~-~-~gn~~r~e~d~~  214 (331)
T KOG2494|consen  159 GLVPAD-----GLPTTPVFV---------------PGGPGVPGPGLV--GGQKLLRSDRLEVCRE-Q-RGNCRRGEQDAQ  214 (331)
T ss_pred             CCCCCc-----CCCCCcccc---------------CCCCcccccccc--cccccccCCCCCCCcc-c-ccccccchhHHH
Confidence            000000     011112221               111212222221  1122223344677887 3 699999875 99


Q ss_pred             CCCCCCccCCCCCcccCCCCCCCCCCCccCccccccCCCCCCCCCCCCCCCCCCCCCC
Q 011853          324 FHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSP  381 (476)
Q Consensus       324 f~Hp~~~~~~~~~~~l~~~g~p~Rpg~~~C~~y~~~G~Ck~G~~Crf~Hp~~~~~~~~  381 (476)
                      |.|+.+.+....+...          ...|..| .+|.|.- ++||+.|......++.
T Consensus       215 f~~~~k~~~~~s~~~t----------~~~~~~~-t~~~~~~-en~~~~~~~~h~~~~~  260 (331)
T KOG2494|consen  215 FAHPAKSIMIDSNDNT----------VEVCLRY-TKGRCET-ENCKYFHAPAHDQASA  260 (331)
T ss_pred             HhhhhhhhhcccCCCc----------chhcccc-ccceech-hcccccCchHHHHHHH
Confidence            9998876643332211          2358888 7899984 7899999876654433

>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]

Probab=99.09  E-value=4.9e-11  Score=115.51  Aligned_cols=54  Identities=24%  Similarity=0.679  Sum_probs=47.2

Q ss_pred             CCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853           88 VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP  161 (476)
Q Consensus        88 ~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~  161 (476)
                      +...-|+||..+|.|-+|..|+|.|.....                   .+|.-|+. |.|...++|.+.|..+
T Consensus       204 psavycryynangicgkgaacrfvheptrk-------------------ticpkfln-grcnkaedcnlsheld  257 (377)
T KOG1492|consen  204 PSAVYCRYYNANGICGKGAACRFVHEPTRK-------------------TICPKFLN-GRCNKAEDCNLSHELD  257 (377)
T ss_pred             CceeEEEEecCCCcccCCceeeeecccccc-------------------ccChHHhc-CccCchhcCCcccccC
Confidence            356689999999999999999999977643                   48999998 9999999999999764

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.64  E-value=3.3e-07  Score=92.53  Aligned_cols=87  Identities=24%  Similarity=0.492  Sum_probs=68.4

Q ss_pred             CCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 011853           43 DEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSN  122 (476)
Q Consensus        43 gt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~  122 (476)
                      .+..|.+|+..+-+...-.|.+.|.....                ....+|++|++ |.|+.+..|.|+|..+....   
T Consensus        73 n~~~~~~~~~~~~~~~~~s~~~~~~~~~~----------------~s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~s---  132 (285)
T COG5084          73 NTVACISRNFNSIRGSRLSTPNNHVNPVL----------------SSSVVCKFFLR-GLCKSGFSCEFLHEYDLRSS---  132 (285)
T ss_pred             cccccccccccCCccccccCCccccCccc----------------cCCcccchhcc-ccCcCCCccccccCCCcccc---
Confidence            45679999876666666689999886431                24468999999 99999999999998885421   


Q ss_pred             cccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853          123 VSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP  161 (476)
Q Consensus       123 ~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~  161 (476)
                                  -...|++|...|.|..|..|.+.|.++
T Consensus       133 ------------~~~~c~~Fs~~G~cs~g~~c~~~h~dp  159 (285)
T COG5084         133 ------------QGPPCRSFSLKGSCSSGPSCGYSHIDP  159 (285)
T ss_pred             ------------cCCCcccccccceeccCCCCCccccCc
Confidence                        124899996569999999999999983

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.59  E-value=5.4e-08  Score=97.89  Aligned_cols=103  Identities=20%  Similarity=0.419  Sum_probs=80.4

Q ss_pred             cCCcchhccCCCCC---CCCCCCC---CCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCC
Q 011853           45 ADCIHYVRTGFCAY---GSRCRFN---HPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG  118 (476)
Q Consensus        45 ~~C~~f~rtG~C~~---Gd~CkF~---H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~  118 (476)
                      .+|.-|.+.|.|++   |+.|.|+   |+.+++....        .-..++++.|..|.+-|.|.||.+|.|.|..++.-
T Consensus       231 ~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~k~--------k~~~frTePcinwe~sGyc~yg~Rc~F~hgd~~~i  302 (351)
T COG5063         231 ELCESFTRKGTCPYWISGVKCQFACRGHGLNELKSKK--------KKQNFRTEPCINWEKSGYCPYGLRCCFKHGDDSDI  302 (351)
T ss_pred             HHhhccCcCCCCccccccccccccccccccccccccc--------cccccccCCccchhhcccCccccccccccCChhhc
Confidence            89999999999999   9999999   9988765321        11236789999999999999999999999887542


Q ss_pred             CCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853          119 SVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP  161 (476)
Q Consensus       119 ~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~  161 (476)
                      .. ... ...+|    ....|+-++++|.|+.|.+|.|.|.+.
T Consensus       303 e~-~~~-~~~~y----~~~~crt~~~~g~~p~g~~~c~~~dkk  339 (351)
T COG5063         303 EM-YEE-ASLGY----LDGPCRTRAKGGAFPSGGAVCKSFDKK  339 (351)
T ss_pred             cc-ccc-ccccc----cccccccccccCccCCCCchhhccccc
Confidence            11 000 11122    345899999999999999999999874

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=98.50  E-value=4.7e-07  Score=91.23  Aligned_cols=197  Identities=18%  Similarity=0.355  Sum_probs=129.1

Q ss_pred             CCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 011853           43 DEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSN  122 (476)
Q Consensus        43 gt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~  122 (476)
                      +++.|.-=..-+.|++++.|.|+|........        ..+.+.+++-|..|..-|.|.++.+|-|.|-.-.......
T Consensus       114 kt~~l~ss~~~~~~~~p~~n~fahs~~issl~--------~~~~K~kt~slev~in~~~vp~s~~~~~~slP~t~~~~q~  185 (351)
T COG5063         114 KTEMLRSSTEIPYCRYPDKNPFAHSKAISSLA--------QTHPKYKTESLEVFINPGYVPYSKRCCFISLPLTDINLQP  185 (351)
T ss_pred             cchhhhccccccccccCCCCcCCCcccccccc--------ccCccccccceeEEecCCccccccccccccccccccCcch
Confidence            45666653334899999999999997764321        3455678899999999999999998999884432110000


Q ss_pred             c-------ccCCCC-----------------------CCCCCC-ccccccccccccCCC---CCCCccC---CCCCCCCC
Q 011853          123 V-------SLNYYG-----------------------YPLRPG-EKECSYYMKTRQCKF---GATCKFH---HPQPAGVP  165 (476)
Q Consensus       123 ~-------~ln~~g-----------------------~P~rp~-~~~C~~f~ktG~C~~---G~~CrF~---Hp~~~~~~  165 (476)
                      .       ..+..+                       .+++.. -.+|.-|...|.|++   |+.|.|+   |.......
T Consensus       186 l~~rkpks~~~~~s~t~~kes~a~P~~~~~~~~~e~n~~L~kt~~~lc~~ft~kg~~p~~~sG~~~q~a~~~HGlN~l~~  265 (351)
T COG5063         186 LSQRKPKSGKNCTSYTLGKESDAHPHDELIYQKQEQNKPLYKTNPELCESFTRKGTCPYWISGVKCQFACRGHGLNELKS  265 (351)
T ss_pred             hhccCcccCcCccccccccccccCchhhhhhhhhhccchhhcCCHHHhhccCcCCCCccccccccccccccccccccccc
Confidence            0       000011                       122211 257999999999999   9999999   77432100


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCcccccCCccccCCCCCCCCcCCCC
Q 011853          166 APTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQGPYGPVLVSPSMFSLQGWSPYATSLNP  245 (476)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~y~~~~~r~~~~p~s~~~~~y~p~~~~~g~vp~~~w~~y~~~~~p  245 (476)
                                                                                                      
T Consensus       266 --------------------------------------------------------------------------------  265 (351)
T COG5063         266 --------------------------------------------------------------------------------  265 (351)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCccCCCcccccccccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCCCCCCCCC
Q 011853          246 ISSPGTGTQSSVGSSSIYGITQLSASAPAYTGTYQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFH  325 (476)
Q Consensus       246 ~~s~~~~~~~~~~~~~~yg~~~~~~~~~~~~~~~~~~~s~~~P~~~~~k~~~~p~rp~~~~C~yy~k~G~Ck~G~~Ckf~  325 (476)
                                                                    ..+-+.|    ....|..+.+.|.|.+|..|.|.
T Consensus       266 ----------------------------------------------k~k~~~f----rTePcinwe~sGyc~yg~Rc~F~  295 (351)
T COG5063         266 ----------------------------------------------KKKKQNF----RTEPCINWEKSGYCPYGLRCCFK  295 (351)
T ss_pred             ----------------------------------------------ccccccc----ccCCccchhhcccCccccccccc
Confidence                                                          0000111    13679999999999999999999


Q ss_pred             CCCCccCCCCCcccCCCCCCCCCCCccCccccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 011853          326 HPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMGMLSYSPSA  383 (476)
Q Consensus       326 Hp~~~~~~~~~~~l~~~g~p~Rpg~~~C~~y~~~G~Ck~G~~Crf~Hp~~~~~~~~sa  383 (476)
                      |--+...  .......+|+-    ..+|.-+++.|.|..|-.|.|.|.+-.+..+..+
T Consensus       296 hgd~~~i--e~~~~~~~~y~----~~~crt~~~~g~~p~g~~~c~~~dkkn~~~s~~~  347 (351)
T COG5063         296 HGDDSDI--EMYEEASLGYL----DGPCRTRAKGGAFPSGGAVCKSFDKKNLDFSVKA  347 (351)
T ss_pred             cCChhhc--ccccccccccc----ccccccccccCccCCCCchhhccccchhhhhhhh
Confidence            9433211  11111112322    3469999999999999999999988877776654

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=1e-07  Score=100.48  Aligned_cols=86  Identities=23%  Similarity=0.583  Sum_probs=66.1

Q ss_pred             cCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCccc
Q 011853           45 ADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVS  124 (476)
Q Consensus        45 ~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~  124 (476)
                      .+|.||+ ...|++++.|.|.|-.+.+.                ...+|.+|+..-.|+.  .|+|.|..-..-      
T Consensus         4 ~dcyff~-ys~cKk~d~c~~rh~E~al~----------------n~t~C~~w~~~~~C~k--~C~YRHSe~~~k------   58 (667)
T KOG4791|consen    4 EDCYFFF-YSTCKKGDSCPFRHCEAALG----------------NETVCTLWQEGRCCRK--VCRYRHSEIDKK------   58 (667)
T ss_pred             ccchhhh-hhhhhccCcCcchhhHHHhc----------------CcchhhhhhhcCcccc--cccchhhHHhhh------
Confidence            6899998 59999999999999866532                3458999999555665  699999765321      


Q ss_pred             cCCCCCCCCCCcccccccccccc-CCCCCCCccCCCCCCCCCC
Q 011853          125 LNYYGYPLRPGEKECSYYMKTRQ-CKFGATCKFHHPQPAGVPA  166 (476)
Q Consensus       125 ln~~g~P~rp~~~~C~~f~ktG~-C~~G~~CrF~Hp~~~~~~~  166 (476)
                               ..+.+|.+|.+ +. |. .++|-|.|..+...++
T Consensus        59 ---------r~e~~CYwe~~-p~gC~-k~~CgfRH~~pPLkg~   90 (667)
T KOG4791|consen   59 ---------RSEIPCYWENQ-PTGCQ-KLNCGFRHNRPPLKGV   90 (667)
T ss_pred             ---------cCcccceeecC-CCccC-CCccccccCCCchhhh
Confidence                     13468999998 77 98 6999999977655543

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=98.46  E-value=1.9e-07  Score=94.26  Aligned_cols=87  Identities=32%  Similarity=0.693  Sum_probs=71.8

Q ss_pred             CCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 011853           43 DEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSN  122 (476)
Q Consensus        43 gt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~  122 (476)
                      ...+|++|++ |.|+.|..|.|+|..+...               .....|++|...|.|..|..|.|.|.....     
T Consensus       103 s~V~c~~~~~-g~c~s~~~c~~lh~~d~~~---------------s~~~~c~~Fs~~G~cs~g~~c~~~h~dp~~-----  161 (285)
T COG5084         103 SSVVCKFFLR-GLCKSGFSCEFLHEYDLRS---------------SQGPPCRSFSLKGSCSSGPSCGYSHIDPDS-----  161 (285)
T ss_pred             CCcccchhcc-ccCcCCCccccccCCCccc---------------ccCCCcccccccceeccCCCCCccccCccc-----
Confidence            4578999997 9999999999999988642               135689999655999999999999986432     


Q ss_pred             cccCCCCCCCCCCccccccccc--cccCCCCCCCccCCCCCC
Q 011853          123 VSLNYYGYPLRPGEKECSYYMK--TRQCKFGATCKFHHPQPA  162 (476)
Q Consensus       123 ~~ln~~g~P~rp~~~~C~~f~k--tG~C~~G~~CrF~Hp~~~  162 (476)
                                  ....|.+|.+  +++|.+|..|+|.|..-+
T Consensus       162 ------------~~~~~~~~~~~~~~f~p~g~~c~~~H~~~~  191 (285)
T COG5084         162 ------------FAGNCDQYSGATYGFCPLGASCKFSHTLKR  191 (285)
T ss_pred             ------------ccccccccCcccccccCCCCcccccccccc
Confidence                        1247888874  699999999999999864

>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]

Probab=98.35  E-value=3e-07  Score=93.57  Aligned_cols=102  Identities=28%  Similarity=0.529  Sum_probs=67.6

Q ss_pred             CcCCcchhccCCCCCCCC-CCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 011853           44 EADCIHYVRTGFCAYGSR-CRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSN  122 (476)
Q Consensus        44 t~~C~~f~rtG~C~~Gd~-CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~  122 (476)
                      -++|+.|+| |.|.+||+ |||+|+.....+      .      .-+-.-|.+|++ |.|.+.. |||+|+.....+.--
T Consensus        37 ~eVCReF~r-n~C~R~d~~CkfaHP~~~~~V------~------~g~v~aC~Ds~k-grCsR~n-CkylHpp~hlkdql~  101 (331)
T KOG2494|consen   37 LEVCREFLR-NTCSRGDRECKFAHPPKNCQV------S------NGRVIACFDSQK-GRCSREN-CKYLHPPQHLKDQLK  101 (331)
T ss_pred             HHHHHHHHh-ccccCCCccccccCCCCCCCc------c------CCeEEEEecccc-CccCccc-ceecCCChhhhhhhh
Confidence            389999999 99999999 999999775322      1      123456999999 9998755 999998874321100


Q ss_pred             --cccC----------CCCCCCCCCccccc--cccccccCCCCC-CCccCCCCC
Q 011853          123 --VSLN----------YYGYPLRPGEKECS--YYMKTRQCKFGA-TCKFHHPQP  161 (476)
Q Consensus       123 --~~ln----------~~g~P~rp~~~~C~--~f~ktG~C~~G~-~CrF~Hp~~  161 (476)
                        .+++          ..+-..-++.++|.  .|. ++.|.-|. .|+|.|...
T Consensus       102 ingrn~l~lq~~~aA~~~q~~~~~g~Pi~~v~~f~-~~~~~~g~~~~s~~~y~~  154 (331)
T KOG2494|consen  102 INGRNNLILQKTAAAMLAQQMQGPGTPICSVPMFA-TGPCLGGNTACSYWPYLP  154 (331)
T ss_pred             hcccccHHHHHHHHhhhcccccCCCcccccccccc-ccccccCCCccccccccC
Confidence              0000          00111124667888  554 47787664 688888765

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.32  E-value=1.5e-07  Score=62.86  Aligned_cols=26  Identities=38%  Similarity=0.950  Sum_probs=21.7

Q ss_pred             CCCcCCcchhccCCCCCCCCCCCCCC
Q 011853           42 PDEADCIHYVRTGFCAYGSRCRFNHP   67 (476)
Q Consensus        42 pgt~~C~~f~rtG~C~~Gd~CkF~H~   67 (476)
                      +++++|++|+++|.|++|++|+|+|+
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             CccccChhhccCCccCCCCCcCccCC
Confidence            57899999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.24  E-value=2.2e-07  Score=62.03  Aligned_cols=27  Identities=37%  Similarity=1.091  Sum_probs=21.6

Q ss_pred             CCCcCcccccccCCCCCCCCCCCCCCC
Q 011853           88 VGQPVCQYYMRTGTCKYGASCKYHHPR  114 (476)
Q Consensus        88 ~ktp~C~~flrtG~Ck~G~~CkF~H~~  114 (476)
                      +++++|++|+++|.|++|++|+|+|+.
T Consensus         1 ~k~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    1 YKTKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             TTSSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             CccccChhhccCCccCCCCCcCccCCC
Confidence            367899999999999999999999973

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=98.06  E-value=1.3e-06  Score=92.96  Aligned_cols=59  Identities=25%  Similarity=0.675  Sum_probs=52.5

Q ss_pred             cccccccccC--CCCCCCCCCCCCCCCCccCCCCCcccCCCCCCCCCCCccCccccccCCCCCCCCCCCCC
Q 011853          304 QQECQYYMKT--GDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDH  372 (476)
Q Consensus       304 ~~~C~yy~k~--G~Ck~G~~Ckf~Hp~~~~~~~~~~~l~~~g~p~Rpg~~~C~~y~~~G~Ck~G~~Crf~H  372 (476)
                      ..+|.-.+..  ..|.||++|||.|+++++...+..+|          .+.|++|...|+|.||-+|||.-
T Consensus        76 n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~Di----------g~~Cp~f~s~G~Cp~G~~CRFl~  136 (614)
T KOG2333|consen   76 NRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPDI----------GPSCPVFESLGFCPYGFKCRFLG  136 (614)
T ss_pred             hccChHhhcCCCccCcccccccccccHHHHHhccCccc----------CCccceeeccccCCccceeehhh
Confidence            5789999965  36999999999999999998888877          46899999999999999999963

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=97.81  E-value=4.1e-05  Score=82.50  Aligned_cols=91  Identities=22%  Similarity=0.452  Sum_probs=68.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCC
Q 011853           54 GFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLR  133 (476)
Q Consensus        54 G~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~r  133 (476)
                      +.|.-+-.|.|.|+-+..+..+..     .|.  +.-.+|.-|-+ |.|++||.|.|.|..-+.          +=.|.+
T Consensus       207 ~~shDwteCPf~HpgEkARRRDPR-----kyh--Ys~tpCPefrk-G~C~rGD~CEyaHgvfEc----------wLHPa~  268 (528)
T KOG1595|consen  207 PRSHDWTECPFAHPGEKARRRDPR-----KYH--YSSTPCPEFRK-GSCERGDSCEYAHGVFEC----------WLHPAR  268 (528)
T ss_pred             ccCCCcccCCccCCCcccccCCcc-----ccc--ccCccCccccc-CCCCCCCccccccceehh----------hcCHHH
Confidence            467778899999977665422111     122  45678999999 999999999999987754          123667


Q ss_pred             CCccccccccccccCCCCCCCccCCCCCCCCCC
Q 011853          134 PGEKECSYYMKTRQCKFGATCKFHHPQPAGVPA  166 (476)
Q Consensus       134 p~~~~C~~f~ktG~C~~G~~CrF~Hp~~~~~~~  166 (476)
                      .++..|+.-   |.|++ .-|-|+|........
T Consensus       269 YRT~~CkDg---~~C~R-rvCfFAH~~eqLR~l  297 (528)
T KOG1595|consen  269 YRTRKCKDG---GYCPR-RVCFFAHSPEQLRPL  297 (528)
T ss_pred             hccccccCC---CCCcc-ceEeeecChHHhccc
Confidence            788999985   88998 999999987765443

>KOG4791 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=9.5e-06  Score=86.02  Aligned_cols=53  Identities=28%  Similarity=0.785  Sum_probs=42.3

Q ss_pred             CcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853           90 QPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP  161 (476)
Q Consensus        90 tp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~  161 (476)
                      .+.|.||+. -.||+++.|.|.|......                ....|.+|+..-.|+  +.|+|.|-+.
T Consensus         3 ~~dcyff~y-s~cKk~d~c~~rh~E~al~----------------n~t~C~~w~~~~~C~--k~C~YRHSe~   55 (667)
T KOG4791|consen    3 GEDCYFFFY-STCKKGDSCPFRHCEAALG----------------NETVCTLWQEGRCCR--KVCRYRHSEI   55 (667)
T ss_pred             cccchhhhh-hhhhccCcCcchhhHHHhc----------------CcchhhhhhhcCccc--ccccchhhHH
Confidence            468999998 8999999999999776442                235899999844455  4999999874

>smart00356 ZnF_C3H1 zinc finger

Probab=97.68  E-value=2.9e-05  Score=50.78  Aligned_cols=26  Identities=35%  Similarity=1.085  Sum_probs=22.3

Q ss_pred             CCCcCcccccccCCCCCCCCCCCCCCC
Q 011853           88 VGQPVCQYYMRTGTCKYGASCKYHHPR  114 (476)
Q Consensus        88 ~ktp~C~~flrtG~Ck~G~~CkF~H~~  114 (476)
                      .++.+|++| .+|.|++|++|+|+|+.
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            467799999 55999999999999963

>smart00356 ZnF_C3H1 zinc finger

Probab=97.67  E-value=3.2e-05  Score=50.59  Aligned_cols=26  Identities=38%  Similarity=1.096  Sum_probs=22.8

Q ss_pred             CCCcCCcchhccCCCCCCCCCCCCCCC
Q 011853           42 PDEADCIHYVRTGFCAYGSRCRFNHPR   68 (476)
Q Consensus        42 pgt~~C~~f~rtG~C~~Gd~CkF~H~~   68 (476)
                      .++.+|++| ++|.|.+|++|+|+|..
T Consensus         2 ~k~~~C~~~-~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        2 YKTELCKFF-KRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCCcCcCc-cCCCCCCCCCcCCCCcC
Confidence            467899999 57999999999999973

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=97.43  E-value=3.4e-05  Score=77.76  Aligned_cols=76  Identities=25%  Similarity=0.624  Sum_probs=50.5

Q ss_pred             CCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc-------------------CCCCCCCCCCccccccccc----
Q 011853           88 VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSL-------------------NYYGYPLRPGEKECSYYMK----  144 (476)
Q Consensus        88 ~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~l-------------------n~~g~P~rp~~~~C~~f~k----  144 (476)
                      ++..+|.||.. |.|..|+.|+|+|+........-.++                   ...+-|--....+|.||+.    
T Consensus        90 PKSvvCafFk~-g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFLeAvE~  168 (343)
T KOG1763|consen   90 PKSVVCAFFKQ-GTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFLEAVEN  168 (343)
T ss_pred             chHHHHHHHhc-cCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHHHHHhc
Confidence            57889999999 99999999999998774321111110                   0011111112358999973    


Q ss_pred             --ccc---CCCCC-CCccCCCCCCCC
Q 011853          145 --TRQ---CKFGA-TCKFHHPQPAGV  164 (476)
Q Consensus       145 --tG~---C~~G~-~CrF~Hp~~~~~  164 (476)
                        +|+   |++|. .|.|.|-.+...
T Consensus       169 ~kYGWfW~CPnGg~~C~YrHaLP~Gy  194 (343)
T KOG1763|consen  169 GKYGWFWECPNGGDKCIYRHALPEGY  194 (343)
T ss_pred             CCccceeECCCCCCeeeeeecCCcch
Confidence              232   99996 999999987654

>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]

Probab=97.36  E-value=3.1e-05  Score=78.07  Aligned_cols=79  Identities=22%  Similarity=0.516  Sum_probs=54.0

Q ss_pred             CCCCCCCCcCCcchhccCCCCCCCCCCCCCCCCCCCcc------ccccCC--C-----------CCCCCCCCCcCccccc
Q 011853           37 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVM------GAARAG--G-----------GEFPERVGQPVCQYYM   97 (476)
Q Consensus        37 ~yp~Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~------~~~r~~--~-----------~~~Per~ktp~C~~fl   97 (476)
                      ..-+.|+..+|.||. .|.|..|+.|+|.|+....+-.      ...|..  .           ...|......+|+||+
T Consensus        85 ~~gvDPKSvvCafFk-~g~C~KG~kCKFsHdl~~~~k~eK~dly~d~rdemWD~~kl~~vv~~K~~k~k~~tdiVCKfFL  163 (343)
T KOG1763|consen   85 PKGVDPKSVVCAFFK-QGTCTKGDKCKFSHDLAVERKKEKIDLYPDTRDEMWDEEKLEEVVLKKHGKPKPTTDIVCKFFL  163 (343)
T ss_pred             ccCCCchHHHHHHHh-ccCCCCCCcccccchHHHhhhccchhccccchhhhhhHHHHHHHHHhhccCCCCchhHHHHHHH
Confidence            345788999999998 4999999999999998664421      111111  0           0122223445899998


Q ss_pred             cc---------CCCCCC-CCCCCCCCCCC
Q 011853           98 RT---------GTCKYG-ASCKYHHPRQG  116 (476)
Q Consensus        98 rt---------G~Ck~G-~~CkF~H~~~~  116 (476)
                      -.         -.|.+| +.|-|.|-...
T Consensus       164 eAvE~~kYGWfW~CPnGg~~C~YrHaLP~  192 (343)
T KOG1763|consen  164 EAVENGKYGWFWECPNGGDKCIYRHALPE  192 (343)
T ss_pred             HHHhcCCccceeECCCCCCeeeeeecCCc
Confidence            52         259998 59999997664

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=97.00  E-value=0.00022  Score=76.40  Aligned_cols=63  Identities=17%  Similarity=0.518  Sum_probs=47.8

Q ss_pred             CCcCccccccc--CCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccC--CCCC
Q 011853           89 GQPVCQYYMRT--GTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFH--HPQP  161 (476)
Q Consensus        89 ktp~C~~flrt--G~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~--Hp~~  161 (476)
                      ...+|.-..++  -.|.||++|+|.|+.+..-.....+          -.+.|.+|...|+|++|-.|||.  |...
T Consensus        75 ~n~LCPsli~g~~~~C~f~d~Crf~HDi~ayLatK~~D----------ig~~Cp~f~s~G~Cp~G~~CRFl~aHld~  141 (614)
T KOG2333|consen   75 QNRLCPSLIQGDISKCSFGDNCRFVHDIEAYLATKAPD----------IGPSCPVFESLGFCPYGFKCRFLGAHLDI  141 (614)
T ss_pred             hhccChHhhcCCCccCcccccccccccHHHHHhccCcc----------cCCccceeeccccCCccceeehhhcccCc
Confidence            46799999995  4799999999999987532111111          12589999999999999999995  5443

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=96.89  E-value=0.00043  Score=74.84  Aligned_cols=59  Identities=22%  Similarity=0.479  Sum_probs=50.3

Q ss_pred             cCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCC
Q 011853           45 ADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAG  118 (476)
Q Consensus        45 ~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~  118 (476)
                      ..|.-|.+ |.|..||.|.|+|++-+--          -+|+++++..|+.=   |.|++ .-|-|+|..+..+
T Consensus       237 tpCPefrk-G~C~rGD~CEyaHgvfEcw----------LHPa~YRT~~CkDg---~~C~R-rvCfFAH~~eqLR  295 (528)
T KOG1595|consen  237 TPCPEFRK-GSCERGDSCEYAHGVFECW----------LHPARYRTRKCKDG---GYCPR-RVCFFAHSPEQLR  295 (528)
T ss_pred             ccCccccc-CCCCCCCccccccceehhh----------cCHHHhccccccCC---CCCcc-ceEeeecChHHhc
Confidence            56888865 9999999999999987632          68999999999986   78999 6799999888653

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=96.66  E-value=0.00026  Score=69.68  Aligned_cols=79  Identities=24%  Similarity=0.575  Sum_probs=54.8

Q ss_pred             CCCCCCCCcCCcchhccCCCCCCCCCCCCCCCCCCCcc------ccccCCCCCC-----CCCCCCcCccccccc---C--
Q 011853           37 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVM------GAARAGGGEF-----PERVGQPVCQYYMRT---G--  100 (476)
Q Consensus        37 ~yp~Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~------~~~r~~~~~~-----Per~ktp~C~~flrt---G--  100 (476)
                      ..-+.|++.+|..|+. +.|..|+.|+|+|..++.+..      ..+|......     |--..-.+|+||+-.   |  
T Consensus        78 ragvdpK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkY  156 (299)
T COG5252          78 RAGVDPKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKY  156 (299)
T ss_pred             ccccCchhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCc
Confidence            3457789999999995 999999999999997765421      1122222222     222344689999842   2  


Q ss_pred             ----CCCCC-CCCCCCCCCCC
Q 011853          101 ----TCKYG-ASCKYHHPRQG  116 (476)
Q Consensus       101 ----~Ck~G-~~CkF~H~~~~  116 (476)
                          .|.+| .+|-|.|....
T Consensus       157 gw~W~CPng~~~C~y~H~Lp~  177 (299)
T COG5252         157 GWGWTCPNGNMRCSYIHKLPD  177 (299)
T ss_pred             cceeeCCCCCceeeeeeccCc
Confidence                59888 78999997664

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.18  E-value=0.0027  Score=66.86  Aligned_cols=56  Identities=29%  Similarity=0.734  Sum_probs=39.0

Q ss_pred             CCCCCCCCCCCCCCC------ccc---cc--cCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCC
Q 011853           58 YGSRCRFNHPRDRGS------VMG---AA--RAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ  115 (476)
Q Consensus        58 ~Gd~CkF~H~~~~~~------~~~---~~--r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~  115 (476)
                      -|.+|.|-|......      +.+   ..  |.- -.+|+-..+.+|.||+. |.|+|+.+|||.|...
T Consensus        98 ~GsKcsaph~ss~gl~yHna~I~g~E~sarvRVl-fl~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~  164 (486)
T KOG2185|consen   98 DGSKCSAPHTSSRGLYYHNARIIGFEGSARVRVL-FLTPTHESMKPCKFFLE-GRCRFGENCRFSHGLD  164 (486)
T ss_pred             cCCcccccccCCccceecceeEEeeccccceEEE-eecCcchhhccchHhhc-cccccCcccccccCcc
Confidence            477888887765531      011   10  110 15666667889999999 9999999999999766

>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]

Probab=96.05  E-value=0.0036  Score=65.91  Aligned_cols=32  Identities=28%  Similarity=0.868  Sum_probs=27.4

Q ss_pred             CCCCCCccccccccccccCCCCCCCccCCCCCC
Q 011853          130 YPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA  162 (476)
Q Consensus       130 ~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~  162 (476)
                      +|.....++|.||+. |.|+|+.+|||.|...-
T Consensus       134 ~PTh~sMkpC~ffLe-g~CRF~enCRfSHG~~V  165 (486)
T KOG2185|consen  134 TPTHESMKPCKFFLE-GRCRFGENCRFSHGLDV  165 (486)
T ss_pred             cCcchhhccchHhhc-cccccCcccccccCccc
Confidence            455556789999998 99999999999998753

>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]

Probab=96.04  E-value=0.0014  Score=64.74  Aligned_cols=75  Identities=27%  Similarity=0.687  Sum_probs=50.6

Q ss_pred             CCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCcccc------CCCCCC--CCC---Cccccccccc---cc------c
Q 011853           88 VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSL------NYYGYP--LRP---GEKECSYYMK---TR------Q  147 (476)
Q Consensus        88 ~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~l------n~~g~P--~rp---~~~~C~~f~k---tG------~  147 (476)
                      +++.+|..|+. +.|..|+.|+|+|.........-..|      ---..|  .||   -..+|.||+.   +|      .
T Consensus        83 pK~~vcalF~~-~~c~kg~~ckF~h~~ee~r~~eK~DLYsDvRd~~ed~pl~krP~intd~VCkffieA~e~GkYgw~W~  161 (299)
T COG5252          83 PKTVVCALFLN-KTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKEEDVPLGKRPWINTDRVCKFFIEAMESGKYGWGWT  161 (299)
T ss_pred             chhHHHHHhcc-CccccCchhhhhcchHHHhhhcccchhhhhhhhhccCCcccCCCCChhHHHHHHHHHHhcCCccceee
Confidence            57889999999 99999999999999765432111111      001112  222   2478999863   23      2


Q ss_pred             CCCC-CCCccCCCCCCC
Q 011853          148 CKFG-ATCKFHHPQPAG  163 (476)
Q Consensus       148 C~~G-~~CrF~Hp~~~~  163 (476)
                      |++| .+|.|.|-.+.+
T Consensus       162 CPng~~~C~y~H~Lp~G  178 (299)
T COG5252         162 CPNGNMRCSYIHKLPDG  178 (299)
T ss_pred             CCCCCceeeeeeccCcc
Confidence            9999 599999988764

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=95.84  E-value=0.014  Score=64.65  Aligned_cols=101  Identities=22%  Similarity=0.563  Sum_probs=57.2

Q ss_pred             cCCcchhccCCCCCCCCCCCCCCCCCCC--ccccccCCCCCCCCC--CCCcCcccccccCCCCCCCCCCCCCCCCCCCC-
Q 011853           45 ADCIHYVRTGFCAYGSRCRFNHPRDRGS--VMGAARAGGGEFPER--VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGS-  119 (476)
Q Consensus        45 ~~C~~f~rtG~C~~Gd~CkF~H~~~~~~--~~~~~r~~~~~~Per--~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~-  119 (476)
                      .+|+||.   .|. +..|.|.|+.....  +.+.+     .++++  .-.+-|+|=.+   |..-+ |.|.|....... 
T Consensus       545 ~~Cky~~---~Ct-~a~Ce~~HPtaa~~~~s~p~k-----~fa~~~~ks~p~Ck~~~k---CtasD-C~~sH~~~~~pvq  611 (681)
T KOG3702|consen  545 TRCKYGP---ACT-SAECEFAHPTAAENAKSLPNK-----KFASKCLKSHPGCKFGKK---CTASD-CNYSHAGRRIPVQ  611 (681)
T ss_pred             ccccCCC---cCC-chhhhhcCCcchhhhhccccc-----cccccceecccccccccc---ccccc-CcccccCCCCCCc
Confidence            6799998   488 88999999976621  11111     11111  11234554333   65444 889997765310 


Q ss_pred             CCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCCCCC
Q 011853          120 VSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGVP  165 (476)
Q Consensus       120 ~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~~~~  165 (476)
                      ...+.-   -++.-....+|+|+   |.|+ ...|+|.|++.-..+
T Consensus       612 ~t~ip~---~~~~~ti~~~CrY~---pnCr-nm~C~F~HPk~cRf~  650 (681)
T KOG3702|consen  612 PTRIPP---PFPGGTIRGLCRYR---PNCR-NMQCKFYHPKTCRFN  650 (681)
T ss_pred             cccCCC---CCCCCCccccceec---cCcC-CccccccCCcccccc
Confidence            001100   01111234689997   6698 589999999875443

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.84  E-value=0.0053  Score=37.88  Aligned_cols=19  Identities=32%  Similarity=0.999  Sum_probs=16.8

Q ss_pred             CcccccccCCCCCCCCCCCCCC
Q 011853           92 VCQYYMRTGTCKYGASCKYHHP  113 (476)
Q Consensus        92 ~C~~flrtG~Ck~G~~CkF~H~  113 (476)
                      .|+||..   |+++++|.|.|+
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            4998876   999999999996

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=95.78  E-value=0.0057  Score=37.75  Aligned_cols=19  Identities=37%  Similarity=1.002  Sum_probs=16.8

Q ss_pred             ccccccccccCCCCCCCccCCC
Q 011853          138 ECSYYMKTRQCKFGATCKFHHP  159 (476)
Q Consensus       138 ~C~~f~ktG~C~~G~~CrF~Hp  159 (476)
                      +|+||..   |+++++|.|.|+
T Consensus         1 ~Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    1 PCKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CCcCcCC---CCCCCcCccCCc
Confidence            4898865   999999999996

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.11  E-value=0.007  Score=58.52  Aligned_cols=30  Identities=37%  Similarity=0.863  Sum_probs=26.5

Q ss_pred             CCcCCcchhccCCCCCCCCCCCCCCCCCCC
Q 011853           43 DEADCIHYVRTGFCAYGSRCRFNHPRDRGS   72 (476)
Q Consensus        43 gt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~   72 (476)
                      ...+|+.|..||.|.|||.|+|+|..++..
T Consensus       140 qpdVCKdyk~TGYCGYGDsCKflH~R~D~K  169 (259)
T COG5152         140 QPDVCKDYKETGYCGYGDSCKFLHDRSDFK  169 (259)
T ss_pred             CcccccchhhcccccCCchhhhhhhhhhhh
Confidence            447899999999999999999999988643

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=94.09  E-value=0.019  Score=55.64  Aligned_cols=27  Identities=48%  Similarity=0.993  Sum_probs=24.7

Q ss_pred             CCcCcccccccCCCCCCCCCCCCCCCC
Q 011853           89 GQPVCQYYMRTGTCKYGASCKYHHPRQ  115 (476)
Q Consensus        89 ktp~C~~flrtG~Ck~G~~CkF~H~~~  115 (476)
                      ...+|+.|..||.|-||+.|+|+|.+.
T Consensus       140 qpdVCKdyk~TGYCGYGDsCKflH~R~  166 (259)
T COG5152         140 QPDVCKDYKETGYCGYGDSCKFLHDRS  166 (259)
T ss_pred             CcccccchhhcccccCCchhhhhhhhh
Confidence            345899999999999999999999987

>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]

Probab=91.19  E-value=0.54  Score=52.67  Aligned_cols=44  Identities=30%  Similarity=0.868  Sum_probs=33.0

Q ss_pred             CCcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCC
Q 011853           89 GQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA  162 (476)
Q Consensus        89 ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~  162 (476)
                      -+.+|+|+   +.|++= .|+|.|+..                       |+|-   -+|.+...|-|.|+.+.
T Consensus       624 i~~~CrY~---pnCrnm-~C~F~HPk~-----------------------cRf~---~~c~~~~sc~fYh~r~n  667 (681)
T KOG3702|consen  624 IRGLCRYR---PNCRNM-QCKFYHPKT-----------------------CRFN---TNCPNNPSCTFYHERPN  667 (681)
T ss_pred             ccccceec---cCcCCc-cccccCCcc-----------------------cccc---ccCCCCcccccccCCcc
Confidence            45689997   559764 499999755                       6664   34888889999999763

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.10  E-value=0.068  Score=54.56  Aligned_cols=29  Identities=38%  Similarity=0.895  Sum_probs=25.9

Q ss_pred             CCcCCcchhccCCCCCCCCCCCCCCCCCC
Q 011853           43 DEADCIHYVRTGFCAYGSRCRFNHPRDRG   71 (476)
Q Consensus        43 gt~~C~~f~rtG~C~~Gd~CkF~H~~~~~   71 (476)
                      -..+|+-|..||.|.||+.|+|+|.....
T Consensus       185 qpDicKdykeTgycg~gdSckFlh~r~Dy  213 (313)
T KOG1813|consen  185 QPDICKDYKETGYCGYGDSCKFLHDRSDY  213 (313)
T ss_pred             CchhhhhhHhhCcccccchhhhhhhhhhc
Confidence            34789999999999999999999998754

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.86  E-value=0.15  Score=53.40  Aligned_cols=24  Identities=38%  Similarity=1.146  Sum_probs=23.0

Q ss_pred             cCcccccccCCCCCCCCCCCCCCCC
Q 011853           91 PVCQYYMRTGTCKYGASCKYHHPRQ  115 (476)
Q Consensus        91 p~C~~flrtG~Ck~G~~CkF~H~~~  115 (476)
                      .+|+||++ |.|++|+.|+|.|.+.
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~   32 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLP   32 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCc
Confidence            68999999 9999999999999887

>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]

Probab=88.33  E-value=0.17  Score=50.80  Aligned_cols=29  Identities=21%  Similarity=0.660  Sum_probs=24.8

Q ss_pred             CCCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853           87 RVGQPVCQYYMRTGTCKYGASCKYHHPRQG  116 (476)
Q Consensus        87 r~ktp~C~~flrtG~Ck~G~~CkF~H~~~~  116 (476)
                      +++...|..|.+ +.|.+|..|.|+|.+..
T Consensus       149 ~~rea~C~~~e~-~~C~rG~~CnFmH~k~~  177 (260)
T KOG2202|consen  149 DFREAICGQFER-TECSRGGACNFMHVKRL  177 (260)
T ss_pred             chhhhhhccccc-ccCCCCCcCcchhhhhh
Confidence            356678999999 69999999999998753

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.23  E-value=0.15  Score=52.16  Aligned_cols=26  Identities=46%  Similarity=1.040  Sum_probs=24.1

Q ss_pred             CcCcccccccCCCCCCCCCCCCCCCC
Q 011853           90 QPVCQYYMRTGTCKYGASCKYHHPRQ  115 (476)
Q Consensus        90 tp~C~~flrtG~Ck~G~~CkF~H~~~  115 (476)
                      ..+|+.|--||.|.||+.|+|+|.+.
T Consensus       186 pDicKdykeTgycg~gdSckFlh~r~  211 (313)
T KOG1813|consen  186 PDICKDYKETGYCGYGDSCKFLHDRS  211 (313)
T ss_pred             chhhhhhHhhCcccccchhhhhhhhh
Confidence            44899999999999999999999887

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.40  E-value=0.21  Score=52.32  Aligned_cols=25  Identities=44%  Similarity=1.083  Sum_probs=23.5

Q ss_pred             cccccccccccCCCCCCCccCCCCCC
Q 011853          137 KECSYYMKTRQCKFGATCKFHHPQPA  162 (476)
Q Consensus       137 ~~C~~f~ktG~C~~G~~CrF~Hp~~~  162 (476)
                      .+|+||++ |.|++|+.|||.|..+.
T Consensus         9 tic~~~~~-g~c~~g~~cr~~h~~~~   33 (344)
T KOG1039|consen    9 TICKYYQK-GNCKFGDLCRLSHSLPD   33 (344)
T ss_pred             hhhhhccc-ccccccceeeeeccCch
Confidence            59999999 99999999999999984

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=83.18  E-value=0.76  Score=29.93  Aligned_cols=23  Identities=35%  Similarity=1.015  Sum_probs=18.3

Q ss_pred             cCcccccccCCCCCCCCCCCCCCC
Q 011853           91 PVCQYYMRTGTCKYGASCKYHHPR  114 (476)
Q Consensus        91 p~C~~flrtG~Ck~G~~CkF~H~~  114 (476)
                      ++|.|-++.|.|.. +.|.|.|-+
T Consensus         1 ~lC~yEl~Gg~Cnd-~~C~~QHfr   23 (23)
T PF10650_consen    1 PLCPYELTGGVCND-PDCEFQHFR   23 (23)
T ss_pred             CCCccccCCCeeCC-CCCCccccC
Confidence            47999999669964 559999953

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=81.15  E-value=0.99  Score=29.41  Aligned_cols=23  Identities=26%  Similarity=0.728  Sum_probs=18.9

Q ss_pred             cccccccccccCCCCCCCccCCCC
Q 011853          137 KECSYYMKTRQCKFGATCKFHHPQ  160 (476)
Q Consensus       137 ~~C~~f~ktG~C~~G~~CrF~Hp~  160 (476)
                      ++|.|-+..|.|. .+.|.|.|-+
T Consensus         1 ~lC~yEl~Gg~Cn-d~~C~~QHfr   23 (23)
T PF10650_consen    1 PLCPYELTGGVCN-DPDCEFQHFR   23 (23)
T ss_pred             CCCccccCCCeeC-CCCCCccccC
Confidence            3799999856996 7899999953

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	476
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-14
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	2e-14
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	4e-14
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-05
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	1e-04
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	2e-07
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	1e-06
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	2e-06
2rhk_C	72	Cleavage and polyadenylation specificity factor su	4e-07
2rhk_C	72	Cleavage and polyadenylation specificity factor su	1e-06
2rhk_C	72	Cleavage and polyadenylation specificity factor su	4e-06
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	5e-05
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	7e-05
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	2e-04
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	1e-04
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	3e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	7e-04

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 67.7 bits (165), Expect = 1e-14
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 93  CQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGA 152
           C+ Y  +G C+YGA C++ H            L       +   + C  +    +C +G+
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLG--------ELRQANRHPKYKTELCHKFKLQGRCPYGS 66

Query: 153 TCKFHHPQ 160
            C F H  
Sbjct: 67  RCHFIHNP 74

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 67.3 bits (164), Expect = 2e-14
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 307 CQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGP 366
           C+ Y ++G C++G+ C+F H            L       +     C  +  +G C +G 
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLG--------ELRQANRHPKYKTELCHKFKLQGRCPYGS 66

Query: 367 ACKFDHP 373
            C F H 
Sbjct: 67  RCHFIHN 73

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 66.5 bits (162), Expect = 4e-14
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 8/67 (11%)

Query: 47  CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGA 106
           C  Y  +G C YG++C+F H                    +    +C  +   G C YG+
Sbjct: 15  CRTYSESGRCRYGAKCQFAHGLGELRQA--------NRHPKYKTELCHKFKLQGRCPYGS 66

Query: 107 SCKYHHP 113
            C + H 
Sbjct: 67  RCHFIHN 73

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 289 SSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRE 329
                ++     +   + C  +   G C +GS C F H   
Sbjct: 35  GLGELRQANRHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT 75

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A Length = 77

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 47 CIHYVRTGFCAYGSRCRFNHPRD 69
          C  +   G C YGSRC F H   
Sbjct: 53 CHKFKLQGRCPYGSRCHFIHNPT 75

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 24/81 (29%)

Query: 292 SQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAA 351
           S        +  ++ C++Y+ TG C    +C + H                         
Sbjct: 2   SSGSSGELPK-KRELCKFYI-TGFCARAENCPYMHGDF---------------------- 37

Query: 352 PCTHYVQRGVCKFGPACKFDH 372
           PC  Y   G C  G  C F H
Sbjct: 38  PCKLYHTTGNCINGDDCMFSH 58

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 23/69 (33%)

Query: 90  QPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCK 149
           + +C++Y+  G C    +C Y H                          C  Y  T  C 
Sbjct: 13  RELCKFYIT-GFCARAENCPYMHGD----------------------FPCKLYHTTGNCI 49

Query: 150 FGATCKFHH 158
            G  C F H
Sbjct: 50  NGDDCMFSH 58

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1 Length = 98

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 23/66 (34%)

Query: 47  CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGA 106
           C  Y+  GFCA    C + H                          C+ Y  TG C  G 
Sbjct: 16  CKFYIT-GFCARAENCPYMHGDF----------------------PCKLYHTTGNCINGD 52

Query: 107 SCKYHH 112
            C + H
Sbjct: 53  DCMFSH 58

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 46.4 bits (110), Expect = 4e-07
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 19/82 (23%)

Query: 292 SQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAA 351
               H          C+++++ G CK G  C F H  E  + KM               +
Sbjct: 4   HHHHHSHMSGEKTVVCKHWLR-GLCKKGDQCEFLH--EYDMTKM---------------S 45

Query: 352 PCTHYVQRGVCKFGPACKFDHP 373
            C  Y + G C     C F H 
Sbjct: 46  ECYFYSKFGECS-NKECPFLHI 66

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 19/67 (28%)

Query: 47  CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGA 106
           C H++R G C  G +C F H  D                 ++    C +Y + G C    
Sbjct: 19  CKHWLR-GLCKKGDQCEFLHEYD---------------MTKM--SECYFYSKFGECS-NK 59

Query: 107 SCKYHHP 113
            C + H 
Sbjct: 60  ECPFLHI 66

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens} Length = 72

 Score = 43.7 bits (103), Expect = 4e-06
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 92  VCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFG 151
           VC++++R G CK G  C++ H                 Y +     EC +Y K  +C   
Sbjct: 18  VCKHWLR-GLCKKGDQCEFLHE----------------YDMTK-MSECYFYSKFGECS-N 58

Query: 152 ATCKFHHPQPA 162
             C F H  P 
Sbjct: 59  KECPFLHIDPE 69

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 19/84 (22%)

Query: 90  QPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCK 149
             VC++++R G CK G  C++ H                         EC +Y K  +C 
Sbjct: 10  TVVCKHWLR-GLCKKGDQCEFLHE-----------------YDMTKMPECYFYSKFGEC- 50

Query: 150 FGATCKFHHPQPAGVPAPTPSPAP 173
               C F H  P       P   P
Sbjct: 51  SNKECPFLHIDPESKIKDCPWSGP 74

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 40.3 bits (94), Expect = 7e-05
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 19/66 (28%)

Query: 307 CQYYMKTGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGP 366
           C+++++ G CK G  C F H  E  + KM                 C  Y + G C    
Sbjct: 13  CKHWLR-GLCKKGDQCEFLH--EYDMTKM---------------PECYFYSKFGEC-SNK 53

Query: 367 ACKFDH 372
            C F H
Sbjct: 54  ECPFLH 59

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 77

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 19/66 (28%)

Query: 47  CIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGA 106
           C H++R G C  G +C F H  D                 +   P C +Y + G C    
Sbjct: 13  CKHWLR-GLCKKGDQCEFLHEYD---------------MTK--MPECYFYSKFGECS-NK 53

Query: 107 SCKYHH 112
            C + H
Sbjct: 54  ECPFLH 59

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 15/75 (20%)

Query: 41  RPDEAD-CIHYVRTGFCAYG-SRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMR 98
           R D  + C  Y R G C  G + CRF HP D   +                  VC  Y++
Sbjct: 2   RTDRLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK 50

Query: 99  TGTCKYGASCKYHHP 113
               +    CKY HP
Sbjct: 51  GRCSR--EKCKYFHP 63

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A Length = 70

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 14/72 (19%)

Query: 91  PVCQYYMRTGTCKYGAS-CKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCK 149
            VC+ Y R G C  G + C++ HP        +  ++     +      C  Y+K R  +
Sbjct: 7   EVCREYQR-GNCNRGENDCRFAHP------ADSTMIDTNDNTVTV----CMDYIKGRCSR 55

Query: 150 FGATCKFHHPQP 161
               CK+ HP  
Sbjct: 56  --EKCKYFHPPA 65

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 18/172 (10%), Positives = 36/172 (20%)

Query: 159 PQPAGVPAPTPSPAPQVAAVPTPVPAPALYPPLQSPSVPSAQQYGVVVARPPLLHGSYVQ 218
            QPA    P    A  ++     +P     P +      +  Q  +              
Sbjct: 24  QQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDM 83

Query: 219 GPYGPVLVSPSMFSLQGWSPYATSLNPISSPGTGTQSSVGSSSIYGITQLSASAPAYTGT 278
             +   LV P+ +          +            +    S+  G      +       
Sbjct: 84  HLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDL 143

Query: 279 YQSLPSSVGPSSSSQKEHPFPERPGQQECQYYMKTGDCKFGSSCRFHHPREL 330
              LP  +   +        P        +    + D    +         L
Sbjct: 144 LTELPPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSL 195

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens} Length = 89

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 16/73 (21%)

Query: 91  PVCQYYMRTGTCKYG-ASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCK 149
            VC+ + R GTC      CK+ HP +     +                 C   +K R C 
Sbjct: 18  EVCRQFQR-GTCSRSDEECKFAHPPKSCQVENG------------RVIACFDSLKGR-C- 62

Query: 150 FGATCKFHHPQPA 162
               CK+ HP   
Sbjct: 63  SRENCKYLHPPTH 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	476
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.49
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.48
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.43
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	99.38
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.26
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	99.26
2rhk_C	72	Cleavage and polyadenylation specificity factor su	99.24
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	99.23
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.15
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	99.11
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	99.0
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	98.93
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.9
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	98.83
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.81
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	98.81
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	98.47
3u9g_A	229	Zinc finger CCCH-type antiviral protein 1; zinc fi	98.05
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	97.3
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	97.36
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	96.43
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	95.24
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.55
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.46
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	92.16
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	92.12

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2e-14  Score=117.13  Aligned_cols=69  Identities=28%  Similarity=0.689  Sum_probs=58.5

Q ss_pred             CCCCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCC
Q 011853           41 RPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSV  120 (476)
Q Consensus        41 Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~  120 (476)
                      ..++.+|+||++ |.|++|++|+|+|+.+..                 ++++|+||+++|.|. |++|+|.|.....   
T Consensus         7 ~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~---   64 (77)
T 2d9n_A            7 GEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPES---   64 (77)
T ss_dssp             CCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTS---
T ss_pred             CCcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCccc---
Confidence            357899999997 999999999999997641                 456899999999999 8999999987643   


Q ss_pred             CccccCCCCCCCCCCccccccccccc
Q 011853          121 SNVSLNYYGYPLRPGEKECSYYMKTR  146 (476)
Q Consensus       121 ~~~~ln~~g~P~rp~~~~C~~f~ktG  146 (476)
                                    ++++|.+|++ |
T Consensus        65 --------------~~~~C~~f~~-g   75 (77)
T 2d9n_A           65 --------------KIKDCPWSGP-S   75 (77)
T ss_dssp             --------------SCSSSSCCTT-T
T ss_pred             --------------cCCCCccccc-C
Confidence                          3469999987 5

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.48  E-value=1.4e-14  Score=117.00  Aligned_cols=69  Identities=25%  Similarity=0.601  Sum_probs=30.2

Q ss_pred             CCCCCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853           40 ERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG  116 (476)
Q Consensus        40 ~Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~  116 (476)
                      .++++.+|++|+++|.|++|++|+|+|+.++.+...        ...+.++.+|++|..+|.|++|++|+|+|...+
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-----------------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            456999999998889999999999999998764211        112467889998887799999999999998653

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.43  E-value=1.7e-14  Score=122.96  Aligned_cols=88  Identities=26%  Similarity=0.417  Sum_probs=69.5

Q ss_pred             CCCCCCCCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853           37 SYPERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG  116 (476)
Q Consensus        37 ~yp~Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~  116 (476)
                      .+..+.++.+|+||+ +|.|++|++|+|+|+                      +.+|++|+++|.|++|++|+|+|+...
T Consensus         6 ~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~~   62 (98)
T 2cqe_A            6 SGELPKKRELCKFYI-TGFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPLT   62 (98)
T ss_dssp             CCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred             cCCCCCCCccCcccc-cCcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence            456677999999997 599999999999999                      237999986699999999999998653


Q ss_pred             CCCC--CccccCCCCCCCCCCcccccccccccc
Q 011853          117 AGSV--SNVSLNYYGYPLRPGEKECSYYMKTRQ  147 (476)
Q Consensus       117 ~~~~--~~~~ln~~g~P~rp~~~~C~~f~ktG~  147 (476)
                      ....  ....++..+++.+.++++|.++.|+|.
T Consensus        63 ~~~~~~l~~~l~~~~~~~~~~e~e~~~~~k~~~   95 (98)
T 2cqe_A           63 EETRELLDKMLADDAEAGAEDEKEVEELKKSGP   95 (98)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCCCCCCSCCCCC
T ss_pred             ccchhHHhhhcchhhhhccCCcHHHHHHHHcCC
Confidence            2100  011244456788899999999999874

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=99.38  E-value=1.7e-13  Score=110.58  Aligned_cols=68  Identities=24%  Similarity=0.618  Sum_probs=29.2

Q ss_pred             CCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853           86 ERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP  161 (476)
Q Consensus        86 er~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~  161 (476)
                      .++++.+|++|+++|.|++|++|+|+|+..+.....        ...+.++.+|++|+++|.|++|++|+|+|...
T Consensus         8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~--------~~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A            8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQAN--------RHPKYKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------------
T ss_pred             CCccchhCHHhhhCCCcCCCCCccCCCCChhhcccc--------ccccccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence            347899999999779999999999999987653211        01133567999888789999999999999874

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.26  E-value=1.7e-12  Score=104.62  Aligned_cols=58  Identities=28%  Similarity=0.701  Sum_probs=50.3

Q ss_pred             CCCCCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853           40 ERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG  116 (476)
Q Consensus        40 ~Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~  116 (476)
                      .+.++.+|+||++ |.|++|++|+|+|+.+.                 .++++|+||+++|.|.+ ++|+|.|....
T Consensus        12 ~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~-----------------~~~~~C~~f~~~G~C~~-~~C~y~H~~p~   69 (72)
T 2rhk_C           12 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM-----------------TKMSECYFYSKFGECSN-KECPFLHIDPE   69 (72)
T ss_dssp             SCCCCSBCHHHHT-TCCCCGGGSSSBCSCCT-----------------TSCCBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred             CCCcCeeCHHHhc-CCCCCCCCCCCcccccc-----------------ccCCcccccCCCCCCCC-CCeeccCCCcc
Confidence            3457899999998 99999999999999654                 24678999999999999 89999998764

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=2.4e-12  Score=104.77  Aligned_cols=58  Identities=31%  Similarity=0.712  Sum_probs=50.3

Q ss_pred             CCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCCCC
Q 011853           88 VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAGV  164 (476)
Q Consensus        88 ~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~~~  164 (476)
                      .++.+|+||++ |.|++|++|+|+|+....                 +.++|+||+++|.|. |++|+|.|..+...
T Consensus         8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~   65 (77)
T 2d9n_A            8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMPECYFYSKFGECS-NKECPFLHIDPESK   65 (77)
T ss_dssp             CTTSBCHHHHT-TCCSCTTSSSSBCSCCTT-----------------TSCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred             CcceeCHhHcc-CcCCCCCCCCCccccccC-----------------cCCCCcccCCCCccC-CCCeeccCCCcccc
Confidence            57889999999 999999999999987642                 235899999989999 89999999987543

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=99.24  E-value=2e-12  Score=104.20  Aligned_cols=57  Identities=32%  Similarity=0.718  Sum_probs=49.3

Q ss_pred             CCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCCC
Q 011853           88 VGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPAG  163 (476)
Q Consensus        88 ~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~~  163 (476)
                      .++.+|+||++ |.|++|++|+|+|+....                 +.++|+||++.|.|.+ ++|+|.|..+..
T Consensus        14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~-----------------~~~~C~~f~~~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT-----------------KMSECYFYSKFGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             CCCSBCHHHHT-TCCCCGGGSSSBCSCCTT-----------------SCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred             CcCeeCHHHhc-CCCCCCCCCCCccccccc-----------------cCCcccccCCCCCCCC-CCeeccCCCccc
Confidence            57789999999 999999999999987632                 3458999998899999 999999998753

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=99.23  E-value=4.7e-12  Score=107.77  Aligned_cols=52  Identities=29%  Similarity=0.742  Sum_probs=46.1

Q ss_pred             CCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853           87 RVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP  161 (476)
Q Consensus        87 r~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~  161 (476)
                      +.++.+|+||++ |.|++|++|+|+|+                      ..+|++|+++|.|++|++|+|.|...
T Consensus        10 ~~k~~lC~~f~~-G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           10 PKKRELCKFYIT-GFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             SCCCSBCTTTTT-TCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CCCCccCccccc-CcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            358899999986 99999999999998                      13899998679999999999999864

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.15  E-value=1.6e-11  Score=98.25  Aligned_cols=60  Identities=37%  Similarity=0.783  Sum_probs=49.1

Q ss_pred             CCcCCcchhccCCCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCC
Q 011853           43 DEADCIHYVRTGFCAYGS-RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ  115 (476)
Q Consensus        43 gt~~C~~f~rtG~C~~Gd-~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~  115 (476)
                      +.++|++|++ |.|.+|+ .|+|+|+.+...+          .+...++++|++|++ |.|.+| +|+|.|+..
T Consensus         5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~----------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A            5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMI----------DTNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCC----------BTTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred             cchhCHHHhc-CCCCCCCCCCCCccCcccccc----------cccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence            3579999986 9999999 5999999876431          122356889999999 999999 799999764

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.11  E-value=1.7e-11  Score=104.49  Aligned_cols=61  Identities=36%  Similarity=0.755  Sum_probs=50.7

Q ss_pred             CCcCCcchhccCCCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853           43 DEADCIHYVRTGFCAYGS-RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG  116 (476)
Q Consensus        43 gt~~C~~f~rtG~C~~Gd-~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~  116 (476)
                      +.++|++|++ |.|.+|+ .|+|+|+.+...+          .+...++++|++|++ |.|.++ +|+|.|+...
T Consensus        19 k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~----------~~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~   80 (98)
T 2e5s_A           19 KLEVCREFQR-GNCARGETDCRFAHPADSTMI----------DTSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAH   80 (98)
T ss_dssp             EEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC----------CTTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred             hhhhhHHHhc-CcCCCCCCCCCCcCCchhccc----------cccCCccccchhhcc-CCCCCC-CcCccCChHH
Confidence            5689999998 9999999 7999999886431          122357789999999 999999 7999998763

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=99.00  E-value=1.2e-10  Score=93.20  Aligned_cols=60  Identities=30%  Similarity=0.697  Sum_probs=47.5

Q ss_pred             CCcCcccccccCCCCCCC-CCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853           89 GQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP  161 (476)
Q Consensus        89 ktp~C~~flrtG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~  161 (476)
                      +..+|++|++ |.|++|+ .|+|+|+.......          +......+|.+|++ |.|.+| .|+|.|+.+
T Consensus         5 k~~vC~~f~~-G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~   65 (70)
T 3d2q_A            5 RLEVCREYQR-GNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPA   65 (70)
T ss_dssp             EEEBCHHHHT-TCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCH
T ss_pred             cchhCHHHhc-CCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHH
Confidence            4578999998 9999998 59999988643110          11124579999999 999999 999999875

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=1.2e-10  Score=99.09  Aligned_cols=62  Identities=27%  Similarity=0.630  Sum_probs=49.4

Q ss_pred             CCCcCcccccccCCCCCCC-CCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCC
Q 011853           88 VGQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA  162 (476)
Q Consensus        88 ~ktp~C~~flrtG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~  162 (476)
                      .+..+|++|++ |.|++|+ .|+|+|+.+.....          +......+|.+|++ |.|.++ +|+|.|+.+.
T Consensus        18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~   80 (98)
T 2e5s_A           18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAH   80 (98)
T ss_dssp             SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred             hhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCChHH
Confidence            36679999999 9999998 79999998753110          11124579999999 999998 9999998754

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.90  E-value=6.4e-10  Score=92.00  Aligned_cols=59  Identities=29%  Similarity=0.625  Sum_probs=48.4

Q ss_pred             CCcCCcchhccCCCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853           43 DEADCIHYVRTGFCAYGS-RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQG  116 (476)
Q Consensus        43 gt~~C~~f~rtG~C~~Gd-~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~  116 (476)
                      +.++|++|++ |.|.+|+ .|+|+|+.....+.            ..+.++|.+|++ |.|.++ +|+|.|+...
T Consensus         8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~------------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~   67 (83)
T 3d2n_A            8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPPH   67 (83)
T ss_dssp             EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE------------TTEEECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred             cchhcHHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeehhHhhh-ccccCC-CcceeCChHH
Confidence            4478999998 9999997 99999998753210            135679999999 999998 7999998763

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=98.83  E-value=1.2e-09  Score=90.46  Aligned_cols=59  Identities=32%  Similarity=0.702  Sum_probs=47.4

Q ss_pred             CCcCcccccccCCCCCCC-CCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCC
Q 011853           89 GQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA  162 (476)
Q Consensus        89 ktp~C~~flrtG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~  162 (476)
                      +..+|++|++ |.|++|+ .|+|+|+.....    ++        .....+|.+|++ |.|.++ .|+|.|+...
T Consensus         8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~----~~--------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~   67 (83)
T 3d2n_A            8 TLEVCREFQR-GTCSRPDTECKFAHPSKSCQ----VE--------NGRVIACFDSLK-GRCSRE-NCKYLHPPPH   67 (83)
T ss_dssp             EEEBCTTGGG-TCCCSCTTTCSSBCCCTTCC----EE--------TTEEECCHHHHT-TCCCCS-SCSSCCCCHH
T ss_pred             cchhcHHHhc-CCCCCCCCCCCCcCCCcccc----cc--------CCceeehhHhhh-ccccCC-CcceeCChHH
Confidence            5579999999 9999996 899999987431    11        113469999999 999998 9999998754

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.81  E-value=1.8e-09  Score=90.38  Aligned_cols=57  Identities=30%  Similarity=0.668  Sum_probs=48.0

Q ss_pred             CcCCcchhccCCCCCCC-CCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCC
Q 011853           44 EADCIHYVRTGFCAYGS-RCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQ  115 (476)
Q Consensus        44 t~~C~~f~rtG~C~~Gd-~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~  115 (476)
                      .++|++|+| |.|.+|+ .|+|+|+.+...+.            ..+.++|.+|++ |.|.++ +|+|.|+..
T Consensus        17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~------------~~~~~vC~dflk-G~C~r~-~Cky~H~~~   74 (89)
T 2rpp_A           17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPT   74 (89)
T ss_dssp             ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB------------TTBEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred             hhhchHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeeehhhhh-CcCCCC-CcceecCHH
Confidence            478999998 9999998 99999998764211            135789999999 999998 699999876

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=98.81  E-value=2.4e-09  Score=89.66  Aligned_cols=59  Identities=31%  Similarity=0.673  Sum_probs=47.5

Q ss_pred             CCcCcccccccCCCCCCC-CCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCC
Q 011853           89 GQPVCQYYMRTGTCKYGA-SCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA  162 (476)
Q Consensus        89 ktp~C~~flrtG~Ck~G~-~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~  162 (476)
                      +.++|++|++ |.|++|+ .|+|+|+.....    ++        .....+|.+|++ |.|.++ .|+|.|+...
T Consensus        16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~----v~--------~~~~~vC~dflk-G~C~r~-~Cky~H~~~h   75 (89)
T 2rpp_A           16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQ----VE--------NGRVIACFDSLK-GRCSRE-NCKYLHPPTH   75 (89)
T ss_dssp             EECBCHHHHH-TCCCCCTTTSSSBCCCSSSC----CB--------TTBEEBCHHHHH-TCCCCT-TCCSBCCCHH
T ss_pred             hhhhchHHhc-CCCCCCCCCCCCcCCCcccc----cc--------CCceeeehhhhh-CcCCCC-CcceecCHHH
Confidence            4568999999 9999997 999999987531    11        113469999999 999987 9999999753

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=98.47  E-value=5.5e-08  Score=93.59  Aligned_cols=85  Identities=20%  Similarity=0.445  Sum_probs=64.0

Q ss_pred             CCcCCcchhccCCCC----CCCCCCCCCCCCCCCccccc------------------cCCCCCCCCCCCCcCccccccc-
Q 011853           43 DEADCIHYVRTGFCA----YGSRCRFNHPRDRGSVMGAA------------------RAGGGEFPERVGQPVCQYYMRT-   99 (476)
Q Consensus        43 gt~~C~~f~rtG~C~----~Gd~CkF~H~~~~~~~~~~~------------------r~~~~~~Per~ktp~C~~flrt-   99 (476)
                      .-.+|++|+- |.|+    .+..|+|.|+.....+..-.                  .+...-+||     +|.+| +. 
T Consensus        88 ~LHLCK~~l~-G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPe-----iC~~Y-kG~  160 (229)
T 3u9g_A           88 SLHLCKLNLL-GRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPE-----ICKSY-KGE  160 (229)
T ss_dssp             SBCCCHHHHT-TCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCC-----BCTTC-CCS
T ss_pred             ceeechhhhc-CcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCch-----HHHHh-CCC
Confidence            3478999995 9993    45789999998764321111                  111123454     89999 73 


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCCCC
Q 011853          100 ---GTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQP  161 (476)
Q Consensus       100 ---G~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~  161 (476)
                         |.|+++++|...|                         +|.+|++ |.|+| ..|+-.|...
T Consensus       161 g~~g~C~~~~~C~kLH-------------------------IC~~Fl~-G~C~f-~~CkRsH~~~  198 (229)
T 3u9g_A          161 GRKQTCGQPQPCERLH-------------------------ICEHFTR-GNCSY-LNCLRSHNLM  198 (229)
T ss_dssp             SSCCSCSSSSCCCSBC-------------------------SCHHHHT-TCCCC-SSCSSCCCTT
T ss_pred             CCCCcCCCCCCCccee-------------------------ccchhhc-CCcCC-CCccCccCcc
Confidence               5899999999898                         8999998 99999 8999999864

>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}

Probab=98.05  E-value=3.1e-06  Score=81.53  Aligned_cols=43  Identities=30%  Similarity=0.729  Sum_probs=38.5

Q ss_pred             cccccccc----CCCCCCCCCCCCCCCCCccCCCCCcccCCCCCCCCCCCccCccccccCCCCCCCCCCCCCCCC
Q 011853          305 QECQYYMK----TGDCKFGSSCRFHHPRELIVPKMDVTLSPFGLPLRPGAAPCTHYVQRGVCKFGPACKFDHPMG  375 (476)
Q Consensus       305 ~~C~yy~k----~G~Ck~G~~Ckf~Hp~~~~~~~~~~~l~~~g~p~Rpg~~~C~~y~~~G~Ck~G~~Crf~Hp~~  375 (476)
                      .+|.+| |    .|.|++++.|...|                         +|.|| ..|.|+| .+||-.|...
T Consensus       152 eiC~~Y-kG~g~~g~C~~~~~C~kLH-------------------------IC~~F-l~G~C~f-~~CkRsH~~~  198 (229)
T 3u9g_A          152 EICKSY-KGEGRKQTCGQPQPCERLH-------------------------ICEHF-TRGNCSY-LNCLRSHNLM  198 (229)
T ss_dssp             CBCTTC-CCSSSCCSCSSSSCCCSBC-------------------------SCHHH-HTTCCCC-SSCSSCCCTT
T ss_pred             hHHHHh-CCCCCCCcCCCCCCCccee-------------------------ccchh-hcCCcCC-CCccCccCcc
Confidence            689999 7    36899999999999                         59999 8999999 8999999863

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=97.30  E-value=6e-07  Score=73.68  Aligned_cols=67  Identities=27%  Similarity=0.730  Sum_probs=53.7

Q ss_pred             CCcCCcchhccCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCcCcccccccCCCCCCCCCCCCCCCCCCCCCCc
Q 011853           43 DEADCIHYVRTGFCAYGSRCRFNHPRDRGSVMGAARAGGGEFPERVGQPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSN  122 (476)
Q Consensus        43 gt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~~~~~~r~~~~~~Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~  122 (476)
                      ..+.|+||.   .|.+ .+|.|.|+..                    ...|+|+..   |++ ..|.|.|+..       
T Consensus         8 ~~e~CKf~~---~Ctn-~~C~f~Hp~~--------------------~~~Cr~g~~---C~~-~~C~f~HP~~-------   52 (80)
T 2lhn_A            8 SLEQCKFGT---HCTN-KRCKYRHARS--------------------HIMCREGAN---CTR-IDCLFGHPIN-------   52 (80)
Confidence            357899998   5999 9999999743                    136999976   988 5699999732       


Q ss_pred             cccCCCCCCCCCCccccccccccccCCCCCCCccCCCCCC
Q 011853          123 VSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHPQPA  162 (476)
Q Consensus       123 ~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp~~~  162 (476)
                                    +.|+|+..   |.+ ..|.|.|+.-.
T Consensus        53 --------------~~Crf~~~---C~n-~~C~F~Hp~g~   74 (80)
T 2lhn_A           53 --------------EDCRFGVN---CKN-IYCLFRHPPGR   74 (80)
Confidence                          37999876   997 89999998643

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.36  E-value=4.3e-05  Score=60.91  Aligned_cols=29  Identities=28%  Similarity=0.583  Sum_probs=26.0

Q ss_pred             CCcCCcchhccCCCCCCCCCCCCCCCCCCC
Q 011853           43 DEADCIHYVRTGFCAYGSRCRFNHPRDRGS   72 (476)
Q Consensus        43 gt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~   72 (476)
                      +..+|..|. +|.|+||++|.|+|+.++++
T Consensus        19 k~~LC~~~~-~G~C~~G~~C~FAHG~~ELr   47 (69)
T 2d9m_A           19 YFSICDRYM-NGTCPEGNSCKFAHGNAELH   47 (69)
T ss_dssp             CCSBCHHHH-HSCCSSCSSCSSBSSHHHHH
T ss_pred             CcccCcccC-cCCCCCCCccCCcCCHHHHh
Confidence            559999995 69999999999999998865

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.43  E-value=0.00081  Score=53.60  Aligned_cols=28  Identities=39%  Similarity=0.800  Sum_probs=24.3

Q ss_pred             CCcCcccccccCCCCCCCCCCCCCCCCCC
Q 011853           89 GQPVCQYYMRTGTCKYGASCKYHHPRQGA  117 (476)
Q Consensus        89 ktp~C~~flrtG~Ck~G~~CkF~H~~~~~  117 (476)
                      +..+|++|++ |.|+||++|.|+|...+.
T Consensus        19 k~~LC~~~~~-G~C~~G~~C~FAHG~~EL   46 (69)
T 2d9m_A           19 YFSICDRYMN-GTCPEGNSCKFAHGNAEL   46 (69)
T ss_dssp             CCSBCHHHHH-SCCSSCSSCSSBSSHHHH
T ss_pred             CcccCcccCc-CCCCCCCccCCcCCHHHH
Confidence            5589999966 999999999999987754

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=95.24  E-value=0.00072  Score=55.40  Aligned_cols=42  Identities=31%  Similarity=0.713  Sum_probs=35.1

Q ss_pred             CcCcccccccCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCccccccccccccCCCCCCCccCCC
Q 011853           90 QPVCQYYMRTGTCKYGASCKYHHPRQGAGSVSNVSLNYYGYPLRPGEKECSYYMKTRQCKFGATCKFHHP  159 (476)
Q Consensus        90 tp~C~~flrtG~Ck~G~~CkF~H~~~~~~~~~~~~ln~~g~P~rp~~~~C~~f~ktG~C~~G~~CrF~Hp  159 (476)
                      .+.|+||..   |++ ..|.|.|+...                    ..|+|+..   |.+ .+|.|.|+
T Consensus         9 ~e~CKf~~~---Ctn-~~C~f~Hp~~~--------------------~~Cr~g~~---C~~-~~C~f~HP   50 (80)
T 2lhn_A            9 LEQCKFGTH---CTN-KRCKYRHARSH--------------------IMCREGAN---CTR-IDCLFGHP   50 (80)
Confidence            458999988   998 88999997642                    37999866   997 88999997

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.55  E-value=0.0038  Score=46.50  Aligned_cols=29  Identities=24%  Similarity=0.597  Sum_probs=26.4

Q ss_pred             CCCcCcccccccCCCCCCCCCCCCCCCCC
Q 011853           88 VGQPVCQYYMRTGTCKYGASCKYHHPRQG  116 (476)
Q Consensus        88 ~ktp~C~~flrtG~Ck~G~~CkF~H~~~~  116 (476)
                      .++.+|.-|...|+|++|.+|.+.|+.+.
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDISG   46 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCCC
Confidence            46789999999999999999999998874

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.46  E-value=0.0055  Score=45.68  Aligned_cols=29  Identities=21%  Similarity=0.549  Sum_probs=26.9

Q ss_pred             CCCcCCcchhccCCCCCCCCCCCCCCCCC
Q 011853           42 PDEADCIHYVRTGFCAYGSRCRFNHPRDR   70 (476)
Q Consensus        42 pgt~~C~~f~rtG~C~~Gd~CkF~H~~~~   70 (476)
                      .++.+|.-|...|.|++|.+|.|.|+++-
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiDl   46 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDISG   46 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCCC
Confidence            57899999999999999999999999874

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=92.16  E-value=0.036  Score=53.75  Aligned_cols=26  Identities=27%  Similarity=0.692  Sum_probs=23.5

Q ss_pred             ccccccccccccCCCCCCCccCCCCCC
Q 011853          136 EKECSYYMKTRQCKFGATCKFHHPQPA  162 (476)
Q Consensus       136 ~~~C~~f~ktG~C~~G~~CrF~Hp~~~  162 (476)
                      ..+|.||.+ |.|.+|+.|.|.|..+.
T Consensus        70 ~~~C~ffak-G~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           70 LFFCLFFAK-GMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             CSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred             CeEcCcccc-CCCCCCCCCCccCCCCC
Confidence            359999999 99999999999998765

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=92.12  E-value=0.043  Score=53.22  Aligned_cols=27  Identities=22%  Similarity=0.726  Sum_probs=23.5

Q ss_pred             CCcCCcchhccCCCCCCCCCCCCCCCCC
Q 011853           43 DEADCIHYVRTGFCAYGSRCRFNHPRDR   70 (476)
Q Consensus        43 gt~~C~~f~rtG~C~~Gd~CkF~H~~~~   70 (476)
                      ...+|.||.| |.|.+|+.|.|+|....
T Consensus        69 ~~~~C~ffak-G~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           69 QLFFCLFFAK-GMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             CCSBCHHHHT-TCCSCGGGCSSBBSCCC
T ss_pred             CCeEcCcccc-CCCCCCCCCCccCCCCC
Confidence            3469999998 99999999999997543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	476
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	1e-04
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	4e-04
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.001
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	2e-04
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	4e-04
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.002
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	3e-04
d1rgoa2	34	g.66.1.1 (A:187-220) Butyrate response factor 2 (T	0.003

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 8/20 (40%), Positives = 12/20 (60%)

Query: 47 CIHYVRTGFCAYGSRCRFNH 66
          C  +  +G C YG +C+F H
Sbjct: 9  CRPFEESGTCKYGEKCQFAH 28

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 4e-04
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 307 CQYYMKTGDCKFGSSCRF-HHPREL 330
           C+ + ++G CK+G  C+F H   EL
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFHEL 33

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 93  CQYYMRTGTCKYGASCKYHH 112
           C+ +  +GTCKYG  C++ H
Sbjct: 9   CRPFEESGTCKYGEKCQFAH 28

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 47 CIHYVRTGFCAYGSRCRFNH 66
          C  Y  +G C YG++C+F H
Sbjct: 12 CRTYSESGRCRYGAKCQFAH 31

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 307 CQYYMKTGDCKFGSSCRF-HHPREL 330
           C+ Y ++G C++G+ C+F H   EL
Sbjct: 12  CRTYSESGRCRYGAKCQFAHGLGEL 36

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 93  CQYYMRTGTCKYGASCKYHH 112
           C+ Y  +G C+YGA C++ H
Sbjct: 12  CRTYSESGRCRYGAKCQFAH 31

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 3e-04
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 47 CIHYVRTGFCAYGSRCRFNH 66
          C  +   GFC YG RC F H
Sbjct: 11 CRTFHTIGFCPYGPRCHFIH 30

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.003
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 307 CQYYMKTGDCKFGSSCRFHH 326
           C+ +   G C +G  C F H
Sbjct: 11  CRTFHTIGFCPYGPRCHFIH 30

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	476
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.51
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.47
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.41
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	98.23
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.13
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	98.08
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.64
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.48
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.95
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	95.82
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	86.16
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	85.71

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=2.7e-08  Score=69.77  Aligned_cols=34  Identities=29%  Similarity=0.651  Sum_probs=31.1

Q ss_pred             CCCCCCcCCcchhccCCCCCCCCCCCCCCCCCCC
Q 011853           39 PERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGS   72 (476)
Q Consensus        39 p~Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~   72 (476)
                      +.++++++|++|.+.|.|++|++|.|+|+.++++
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            4577999999999999999999999999999875

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.2e-08  Score=69.99  Aligned_cols=33  Identities=27%  Similarity=0.616  Sum_probs=30.2

Q ss_pred             CCCCCcCCcchhccCCCCCCCCCCCCCCCCCCC
Q 011853           40 ERPDEADCIHYVRTGFCAYGSRCRFNHPRDRGS   72 (476)
Q Consensus        40 ~Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~~~   72 (476)
                      .++||++|++|.+.|.|.+|++|.|+|+.++++
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   34 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHELR   34 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGCC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHcc
Confidence            367999999999889999999999999999875

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.7e-08  Score=67.46  Aligned_cols=30  Identities=37%  Similarity=0.865  Sum_probs=27.8

Q ss_pred             CCCCcCCcchhccCCCCCCCCCCCCCCCCC
Q 011853           41 RPDEADCIHYVRTGFCAYGSRCRFNHPRDR   70 (476)
Q Consensus        41 Rpgt~~C~~f~rtG~C~~Gd~CkF~H~~~~   70 (476)
                      ++++++|++|.++|.|.||++|.|+|+.++
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            579999999999999999999999999764

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=3e-07  Score=64.31  Aligned_cols=33  Identities=30%  Similarity=0.786  Sum_probs=29.8

Q ss_pred             CCCCCCcCcccccccCCCCCCCCCCCCCCCCCC
Q 011853           85 PERVGQPVCQYYMRTGTCKYGASCKYHHPRQGA  117 (476)
Q Consensus        85 Per~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~  117 (476)
                      +.++|+.+|++|+++|.|.+|++|.|+|..++.
T Consensus         4 ~~~yKT~lC~~~~~~g~C~~G~~C~FAHg~~EL   36 (40)
T d1m9oa_           4 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGEL   36 (40)
T ss_dssp             SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCG
T ss_pred             CCccccccChhhhcCCcCCCCCCCCCCCCHHHh
Confidence            456899999999999999999999999988765

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.3e-07  Score=62.76  Aligned_cols=29  Identities=24%  Similarity=0.760  Sum_probs=27.0

Q ss_pred             CCCCcCcccccccCCCCCCCCCCCCCCCC
Q 011853           87 RVGQPVCQYYMRTGTCKYGASCKYHHPRQ  115 (476)
Q Consensus        87 r~ktp~C~~flrtG~Ck~G~~CkF~H~~~  115 (476)
                      ++|+.+|++|..+|.|.||++|.|+|..+
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCC
Confidence            48999999999999999999999999865

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.7e-07  Score=63.16  Aligned_cols=32  Identities=31%  Similarity=0.777  Sum_probs=28.8

Q ss_pred             CCCCCcCcccccccCCCCCCCCCCCCCCCCCC
Q 011853           86 ERVGQPVCQYYMRTGTCKYGASCKYHHPRQGA  117 (476)
Q Consensus        86 er~ktp~C~~flrtG~Ck~G~~CkF~H~~~~~  117 (476)
                      .++|+.+|++|.++|.|.+|++|.|+|..++.
T Consensus         2 ~kyKT~lC~~~~~~g~C~~G~~C~FAHg~~EL   33 (36)
T d1rgoa1           2 TRYKTELCRPFEESGTCKYGEKCQFAHGFHEL   33 (36)
T ss_dssp             TTTTSSBCHHHHHHSCCTTGGGCSSBSSGGGC
T ss_pred             CCcchhhCcchhcCCcCCCCCcCCCcCCHHHc
Confidence            35899999999988999999999999988765

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=9.8e-06  Score=51.68  Aligned_cols=24  Identities=29%  Similarity=0.927  Sum_probs=22.4

Q ss_pred             CCcCcccccccCCCCCCCCCCCCCC
Q 011853           89 GQPVCQYYMRTGTCKYGASCKYHHP  113 (476)
Q Consensus        89 ktp~C~~flrtG~Ck~G~~CkF~H~  113 (476)
                      +..+|+||++ |.|.+|++|.|.|.
T Consensus         5 kkelCKfYvq-GyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYIT-GFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTTT-TCCSCSTTCSSBSS
T ss_pred             hhhhhhhhee-eeecCCcCcccccC
Confidence            5679999999 99999999999996

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.6e-05  Score=49.70  Aligned_cols=24  Identities=38%  Similarity=0.891  Sum_probs=22.2

Q ss_pred             CCcCCcchhccCCCCCCCCCCCCCC
Q 011853           43 DEADCIHYVRTGFCAYGSRCRFNHP   67 (476)
Q Consensus        43 gt~~C~~f~rtG~C~~Gd~CkF~H~   67 (476)
                      ++.+|+||+ +|.|.+|++|.|.|.
T Consensus         5 kkelCKfYv-qGyCtrgenC~ymH~   28 (29)
T d2cqea2           5 KRELCKFYI-TGFCARAENCPYMHG   28 (29)
T ss_dssp             CCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             hhhhhhhhe-eeeecCCcCcccccC
Confidence            678999999 599999999999996

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0012  Score=48.46  Aligned_cols=23  Identities=35%  Similarity=0.790  Sum_probs=20.8

Q ss_pred             ccccccccccCCCCCCCccCCCC
Q 011853          138 ECSYYMKTRQCKFGATCKFHHPQ  160 (476)
Q Consensus       138 ~C~~f~ktG~C~~G~~CrF~Hp~  160 (476)
                      +|+||..++.|..|++|+|+|..
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~p   24 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHDP   24 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCCC
T ss_pred             CcceeecCCcccCCCcccccCCc
Confidence            69999987899999999999954

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0013  Score=48.31  Aligned_cols=21  Identities=43%  Similarity=1.061  Sum_probs=19.4

Q ss_pred             cccccccCCCCCCCCCCCCCC
Q 011853          306 ECQYYMKTGDCKFGSSCRFHH  326 (476)
Q Consensus       306 ~C~yy~k~G~Ck~G~~Ckf~H  326 (476)
                      .|+||...+.|..|++|+|+|
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH   22 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSH   22 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBC
T ss_pred             CcceeecCCcccCCCcccccC
Confidence            599999767999999999999

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.16  E-value=0.089  Score=34.86  Aligned_cols=24  Identities=21%  Similarity=0.540  Sum_probs=22.1

Q ss_pred             ccccccccccccCCCCCCCccCCC
Q 011853          136 EKECSYYMKTRQCKFGATCKFHHP  159 (476)
Q Consensus       136 ~~~C~~f~ktG~C~~G~~CrF~Hp  159 (476)
                      +.+|..|...|+|++|..|...|.
T Consensus        13 ~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          13 TSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             SCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             cchhhhhhhccccCCCCCCcccCc
Confidence            359999999999999999999996

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.71  E-value=0.11  Score=34.39  Aligned_cols=26  Identities=23%  Similarity=0.609  Sum_probs=23.6

Q ss_pred             CCCcCcccccccCCCCCCCCCCCCCC
Q 011853           88 VGQPVCQYYMRTGTCKYGASCKYHHP  113 (476)
Q Consensus        88 ~ktp~C~~flrtG~Ck~G~~CkF~H~  113 (476)
                      ..+.+|..|...|.|..|.+|.-.|+
T Consensus        11 ~~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          11 HPTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             CccchhhhhhhccccCCCCCCcccCc
Confidence            35679999999999999999999996