Citrus Sinensis ID: 011863

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470------
MPSNGKKEGTNVPLLQDSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIWVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAATALRNIK
ccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHEEEHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccc
mpsngkkegtnvpllqdsastnvpllqgsastapspddsagtlTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGqafggkkyYMLGVYMQRSWIVLFICCVLLlplyvfaspvlkllgqpddvaelSGVVSLwllpvhfsfafqfplQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGyvacggcprtwtgfsmEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIWVRVSnelgagngkgarFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAATALRNIK
mpsngkkegtnvpllqdSASTNVPLLQGSastapspddsaGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIWVRVSNElgagngkgaRFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAATALRNIK
MPSNGKKEGTNVPLLQDSASTNVPLLQGsastapspddsaGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIawvslasllvhllvtwlfvYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIWVRVSNELGAGNGKGARFATIVSVVTSIAIGVfffililifHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAATALRNIK
******************************************LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIWVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDR*************
******************************************LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIWVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEK**T******
**********NVPLLQDSASTNVPLLQ**************TLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIWVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAE**********
*************************************DSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIWVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAATA*****
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MPSNGKKEGTNVPLLQDSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIWVRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAATALRNIK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query476 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.957 0.899 0.393 4e-93
Q9SIA5476 MATE efflux family protei no no 0.890 0.890 0.339 1e-63
Q8GXM8476 MATE efflux family protei no no 0.907 0.907 0.326 4e-63
Q9LUH3469 MATE efflux family protei no no 0.894 0.908 0.345 7e-63
Q9SIA4476 MATE efflux family protei no no 0.924 0.924 0.341 8e-63
Q9SIA3476 MATE efflux family protei no no 0.915 0.915 0.332 1e-62
Q9LUH2477 MATE efflux family protei no no 0.936 0.935 0.323 5e-60
Q9SIA1477 MATE efflux family protei no no 0.928 0.926 0.321 2e-55
Q8RWF5483 MATE efflux family protei no no 0.918 0.904 0.326 2e-55
Q8K0H1567 Multidrug and toxin extru yes no 0.926 0.777 0.280 9e-47
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  342 bits (877), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 195/495 (39%), Positives = 296/495 (59%), Gaps = 39/495 (7%)

Query: 17  DSASTNVPLL-------QGSASTAPSPDD----SAGTLTRRFWI-----ESKKLWHIVGP 60
            S  T  PLL       Q +  ++P  ++       T+T R+W+     ESK LW + G 
Sbjct: 2   SSTETYEPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLSGA 61

Query: 61  TIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAF 120
           +I   + +Y +  +T  F GHLG L+LA  SIA   +    +G++LGMASA++T+CGQA+
Sbjct: 62  SIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAY 121

Query: 121 GGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPV 180
           G ++Y  +G+  QR+ ++     V L  LY ++ P+LK +GQ   +A    + +  ++P 
Sbjct: 122 GARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQ 181

Query: 181 HFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSW 240
            ++FA   P+QRFLQ+Q     +A++SL   L+H L+TWL    +  GL+G A+ LSFSW
Sbjct: 182 IYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSW 241

Query: 241 WVLIF--GMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILM 298
           W+L+   GM+  +    C  TWTGFS  AF  +W + KL+VAS VMLCLE WY + L+++
Sbjct: 242 WLLVAVNGMY-ILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQGLVII 300

Query: 299 TGNLQNAKIAVDALSI------W-------------VRVSNELGAGNGKGARFATIVSVV 339
           +G L N  I++DA+SI      W             VRVSNELGAGN + A  + +V  +
Sbjct: 301 SGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRVAMLSVVVVNI 360

Query: 340 TSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVG 399
           T++ I     +++L+F   L+  F+S   ++  VS +  LLA +I LN +QP+LSGVA+G
Sbjct: 361 TTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGIQPILSGVAIG 420

Query: 400 SGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRC 459
           SGWQ++VAY+NL  YY+IG+P+G +LG+    GV GIW GMI  G  +QTL L ++T++ 
Sbjct: 421 SGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMI-AGVILQTLTLIVLTLKT 479

Query: 460 DWDREAEKAATALRN 474
           +W  E E AA  ++ 
Sbjct: 480 NWTSEVENAAQRVKT 494
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query476
224097194488 predicted protein [Populus trichocarpa] 0.947 0.924 0.735 0.0
356497726491 PREDICTED: protein TRANSPARENT TESTA 12- 0.968 0.938 0.710 0.0
357485623490 Protein TRANSPARENT TESTA [Medicago trun 0.932 0.906 0.730 0.0
255586693482 multidrug resistance pump, putative [Ric 0.962 0.950 0.703 0.0
302142014521 unnamed protein product [Vitis vinifera] 0.968 0.884 0.687 0.0
359492469490 PREDICTED: protein TRANSPARENT TESTA 12- 0.968 0.940 0.687 0.0
449438809484 PREDICTED: protein TRANSPARENT TESTA 12- 0.957 0.942 0.682 0.0
356508053503 PREDICTED: protein TRANSPARENT TESTA 12 0.962 0.910 0.649 0.0
297797567486 hypothetical protein ARALYDRAFT_496771 [ 0.918 0.899 0.700 1e-180
15238439486 mate efflux domain-containing protein [A 0.955 0.936 0.663 1e-178
>gi|224097194|ref|XP_002310871.1| predicted protein [Populus trichocarpa] gi|222853774|gb|EEE91321.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/472 (73%), Positives = 395/472 (83%), Gaps = 21/472 (4%)

Query: 17  DSASTNVPLLQGSASTAPSPDDSAGTLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQ 76
           D     VPLL+    T    D     L  R  +ESKKLWHIVGP IFSR+ SYSM VITQ
Sbjct: 9   DYLEAKVPLLE--EKTKRDDDIVVQDLACRVGVESKKLWHIVGPAIFSRLTSYSMLVITQ 66

Query: 77  AFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSW 136
           AFAGHLGDLELA ISIAN V+V F+FGLLLGMASALETLCGQAFG KKYYMLGVYMQRSW
Sbjct: 67  AFAGHLGDLELAGISIANNVIVGFDFGLLLGMASALETLCGQAFGAKKYYMLGVYMQRSW 126

Query: 137 IVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQS 196
           IVLF+CC+LLLPLY+FASPVLKLLGQP+D+AELSG  ++W++P+HFSFAFQFPLQRFLQS
Sbjct: 127 IVLFLCCILLLPLYLFASPVLKLLGQPNDIAELSGKAAVWMIPLHFSFAFQFPLQRFLQS 186

Query: 197 QLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGC 256
           QLK MVIAWVS  +L+VH+ V+WL VYK+QLG+ GTA+TL+FSWWVL+FG+ GY  CGGC
Sbjct: 187 QLKNMVIAWVSFVALVVHIFVSWLLVYKLQLGVAGTAMTLNFSWWVLVFGLLGYTICGGC 246

Query: 257 PRTWTGFSMEAFSDLWEFVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSI-- 314
           P TWTGFS EAFS LWEF KLS ASGVMLCLENWYYR+LILMTGNL+NA+IAVDALSI  
Sbjct: 247 PLTWTGFSTEAFSGLWEFTKLSAASGVMLCLENWYYRILILMTGNLKNAEIAVDALSICM 306

Query: 315 ----W-------------VRVSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHN 357
               W             VRV+NELGAGNGKGA+FATIVSV TS+ IG+ F++LI+ FH+
Sbjct: 307 TINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATIVSVTTSVIIGLVFWLLIMFFHD 366

Query: 358 ELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLI 417
           +L  IF+SSE +L+ V+K+SILLAFT+LLNSVQPVLSGVAVGSGWQ  VAYINLGCYY I
Sbjct: 367 KLTWIFTSSEPVLEAVNKLSILLAFTVLLNSVQPVLSGVAVGSGWQKYVAYINLGCYYAI 426

Query: 418 GVPLGILLGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAA 469
           GVPLG L+GW FHQGVMGIWAGMIFGGTAVQTLILAIIT+RCDW++EAEKA+
Sbjct: 427 GVPLGFLMGWFFHQGVMGIWAGMIFGGTAVQTLILAIITIRCDWEKEAEKAS 478

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356497726|ref|XP_003517710.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|357485623|ref|XP_003613099.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355514434|gb|AES96057.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information
>gi|255586693|ref|XP_002533972.1| multidrug resistance pump, putative [Ricinus communis] gi|223526044|gb|EEF28410.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|302142014|emb|CBI19217.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492469|ref|XP_002285728.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449438809|ref|XP_004137180.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] gi|449476480|ref|XP_004154748.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356508053|ref|XP_003522776.1| PREDICTED: protein TRANSPARENT TESTA 12 [Glycine max] Back     alignment and taxonomy information
>gi|297797567|ref|XP_002866668.1| hypothetical protein ARALYDRAFT_496771 [Arabidopsis lyrata subsp. lyrata] gi|297312503|gb|EFH42927.1| hypothetical protein ARALYDRAFT_496771 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15238439|ref|NP_201341.1| mate efflux domain-containing protein [Arabidopsis thaliana] gi|14030731|gb|AAK53040.1|AF375456_1 AT5g65380/MNA5_11 [Arabidopsis thaliana] gi|9759618|dbj|BAB11560.1| unnamed protein product [Arabidopsis thaliana] gi|23506079|gb|AAN28899.1| At5g65380/MNA5_11 [Arabidopsis thaliana] gi|332010662|gb|AED98045.1| mate efflux domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query476
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.581 0.569 0.660 6.8e-160
TAIR|locus:2142544489 AT5G10420 [Arabidopsis thalian 0.586 0.570 0.612 9.1e-154
TAIR|locus:2206960494 AT1G33110 "AT1G33110" [Arabido 0.581 0.560 0.451 3e-112
TAIR|locus:2037960494 AT1G33080 "AT1G33080" [Arabido 0.634 0.611 0.438 1.7e-109
TAIR|locus:2172477491 AT5G44050 "AT5G44050" [Arabido 0.785 0.761 0.489 1.6e-95
TAIR|locus:2096379500 AT3G03620 "AT3G03620" [Arabido 0.571 0.544 0.382 8e-91
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.716 0.653 0.402 1e-68
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.584 0.556 0.456 4e-67
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.823 0.809 0.366 5.1e-67
TAIR|locus:2037980494 AT1G33090 "AT1G33090" [Arabido 0.630 0.607 0.435 6.5e-67
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 987 (352.5 bits), Expect = 6.8e-160, Sum P(2) = 6.8e-160
 Identities = 183/277 (66%), Positives = 214/277 (77%)

Query:    43 LTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNF 102
             L  R  +E+KKLW IVGP IFSR+ +YSM VITQAFAGHLGDLELAAISI N V V FNF
Sbjct:    30 LKDRILVETKKLWQIVGPAIFSRVTTYSMLVITQAFAGHLGDLELAAISIVNNVTVGFNF 89

Query:   103 GLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQ 162
             GLLLGMASALETLCGQAFG KKY+MLGVYMQRSWIVLF CCVLLLP Y+F +PVLK LGQ
Sbjct:    90 GLLLGMASALETLCGQAFGAKKYHMLGVYMQRSWIVLFFCCVLLLPTYIFTTPVLKFLGQ 149

Query:   163 PDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIXXXXXXXXXXXXXXXXXXX 222
             PDD+AELSGVV++W++P+HF+F   FPLQRFLQ QLK  V                    
Sbjct:   150 PDDIAELSGVVAIWVIPLHFAFTLSFPLQRFLQCQLKNRVTAYAAAVALVVHILVCWLFV 209

Query:   223 YKMQLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRTWTGFSMEAFSDLWEFVKLSVASG 282
               ++LG++GT  T+S SWWV +  +  Y  CGGCP TWTG S EA + LWEF+KLS +SG
Sbjct:   210 DGLKLGVVGTVATISISWWVNVLILLVYSTCGGCPLTWTGLSSEALTGLWEFLKLSASSG 269

Query:   283 VMLCLENWYYRVLILMTGNLQNAKIAVDALSIWVRVS 319
             VMLCLENWYYR+LI+MTGNLQNA+IAVD+LSI + ++
Sbjct:   270 VMLCLENWYYRILIIMTGNLQNARIAVDSLSICMAIN 306
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0009835 "fruit ripening" evidence=ISS
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2142544 AT5G10420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037960 AT1G33080 "AT1G33080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172477 AT5G44050 "AT5G44050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096379 AT3G03620 "AT3G03620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037980 AT1G33090 "AT1G33090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-154
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 1e-42
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-41
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 3e-41
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 4e-28
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 2e-26
pfam01554161 pfam01554, MatE, MatE 2e-25
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 8e-24
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-22
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 8e-19
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-17
pfam01554161 pfam01554, MatE, MatE 3e-16
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 3e-15
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 9e-11
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 1e-10
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 4e-09
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 1e-08
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 9e-07
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 1e-05
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 1e-04
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 2e-04
cd13147 441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 3e-04
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 0.001
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 0.002
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 0.002
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  445 bits (1146), Expect = e-154
 Identities = 181/438 (41%), Positives = 277/438 (63%), Gaps = 22/438 (5%)

Query: 50  ESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMA 109
           E+KKL  +  P + + +  YS+ V++  F GHLG LELAA S+A++      F +LLG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 110 SALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAEL 169
           SAL+TLCGQAFG K Y ++GVY+QR+ ++L +CCV +  L++   P+L LLGQ  ++A L
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 170 SGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLFVYKMQLGL 229
           +G    WL+P  F++A   PL+R+LQ+Q   + + ++SL +LL+++L+ +L V+ + LG 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 230 IGTAITLSFSWWVLIFGMFGYV-ACGGCPRTWTGFSMEAFSDLWEFVKLSVASGVMLCLE 288
           IG A+  S S+W+++  +  Y+    G   TW GFS EAF     F+KL++ S +MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 289 NWYYRVLILMTGNLQNAKIAVDALSIW-------------------VRVSNELGAGNGKG 329
            W + +L+L+ G L    +A+ A SI                    VRV NELGAGN K 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 330 ARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSV 389
           A+ A IV+++ S+ IGV   IL+L+  +  A +F+S E ++ +V+ +  +LA   + + +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 390 QPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWVFHQGVMGIWAGMIFGGTAVQT 449
           Q VLSGV  G G Q + AY+NL  YYLIG+P+G+LL +V   G+ G+W G+I  G  +Q 
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIA-GLILQA 418

Query: 450 LILAIITMRCDWDREAEK 467
           +IL +I +R DWD+EAEK
Sbjct: 419 VILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 476
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.97
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.96
PRK10459492 colanic acid exporter; Provisional 99.95
COG2244480 RfbX Membrane protein involved in the export of O- 99.92
PRK00187464 multidrug efflux protein NorA; Provisional 99.89
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.87
PRK10189478 MATE family multidrug exporter; Provisional 99.86
PRK01766456 multidrug efflux protein; Reviewed 99.86
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.85
TIGR01695502 mviN integral membrane protein MviN. This model re 99.82
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.79
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.73
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.73
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.72
PRK10459492 colanic acid exporter; Provisional 99.68
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.68
PRK15099416 O-antigen translocase; Provisional 99.65
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.61
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.6
COG2244480 RfbX Membrane protein involved in the export of O- 99.57
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.54
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.29
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.05
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.0
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.96
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.77
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.46
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.42
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.19
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.76
COG4267467 Predicted membrane protein [Function unknown] 97.65
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.2
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.15
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 96.97
PF05975 386 EcsB: Bacterial ABC transporter protein EcsB; Inte 89.83
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-53  Score=422.19  Aligned_cols=421  Identities=24%  Similarity=0.372  Sum_probs=391.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCccc
Q 011863           47 FWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGKKYY  126 (476)
Q Consensus        47 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~  126 (476)
                      .++..|+++++++|+++++++..+++++|+.++||+|++++++.+++.++..+ ...+..|++.+..+.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~-~~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFL-IIAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHcCCchH
Confidence            55688999999999999999999999999999999999999999999999999 89999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHHHH
Q 011863          127 MLGVYMQRSWIVLFICCVLLLPL-YVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAW  205 (476)
Q Consensus       127 ~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  205 (476)
                      ++++..++++.++++++++..++ +.+.++++.+++.++++.+.+.+|+++..++.|+..++....+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999777655 99999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-cC-CCcchHHHHHHHHHHHHHHHHHHHHHhcCC--CCccCCCChhhHHhHHHHHHHHHHH
Q 011863          206 VSLASLLVHLLVTWLFVYK-MQ-LGLIGTAITLSFSWWVLIFGMFGYVACGGC--PRTWTGFSMEAFSDLWEFVKLSVAS  281 (476)
Q Consensus       206 ~~i~~~~~~i~l~~~li~~-~~-~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~  281 (476)
                      .++++.++|+++|++++++ ++ +|+.|+++||++++++.+++..+++.+++.  .....+..+.+++.+|+++++|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 57 999999999999999999999999998753  3332334455668999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-----------------HHHHHhhcCCChhhHHHHHHHHHHHHHHH
Q 011863          282 GVMLCLENWYYRVLILMTGNLQNAKIAVDALSIW-----------------VRVSNELGAGNGKGARFATIVSVVTSIAI  344 (476)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~-----------------~~~s~~~g~~~~~~~~~~~~~~~~~~~~~  344 (476)
                      ++++..+...+...+.+.+++|++.+|....+..                 |++++++|+||++++++..+.+.++++.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~  330 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLI  330 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999876654332221                 99999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHHHHHHH
Q 011863          345 GVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGIL  424 (476)
Q Consensus       345 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i~~~~~  424 (476)
                      ++..+++++++++++.++|++|+|+.+.+..++++..+..++++.+.+..+++||.||++.++..++++.|.+.+|+.++
T Consensus       331 ~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~  410 (455)
T COG0534         331 ALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYL  410 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 011863          425 LGWVFHQGVMGIWAGMIFGGTAVQTLILAIITMRCDWDREAEKAAT  470 (476)
Q Consensus       425 l~~~~~~g~~g~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (476)
                      +.... +|..|+|++.. .++.++.++..++++|.+|++...+.++
T Consensus       411 l~~~~-~g~~Gvw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (455)
T COG0534         411 LGFFF-LGLAGVWIGFP-LSLILRAILLLLRLRRGRWRRKAVAAAS  454 (455)
T ss_pred             Hhhhc-ccchHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhhccc
Confidence            99544 99999999999 9999999999999999999887765543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 3e-08
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 82/435 (18%), Positives = 176/435 (40%), Gaps = 38/435 (8%)
Query: 45  RRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTV---VVAFN 101
            R+  E+  L  +  P + + +A   M  +    AG +  +++AA+SIA ++    + F 
Sbjct: 5   HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG 64
Query: 102 FGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLG 161
            GLL+    AL  +  Q  G  + + +   + +  I+  +  V ++ +      +++ + 
Sbjct: 65  VGLLM----ALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMD 120
Query: 162 QPDDVAELS-GVVSLWLLPVHFSFAFQFPLQRFLQSQLKT---MVIXXXXXXXXXXXXXX 217
             + +A  + G +   +  V     FQ  L+ F      T   MVI              
Sbjct: 121 VEEAMATKTVGYMHAVIFAVPAYLLFQ-ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWI 179
Query: 218 XXXXXY-KMQLGLIGTAITLSFSWWVLIFGMFGYVACG---GCPRTWTGFSMEAFSDLWE 273
                +   +LG +G  +  +  +W+++  +  Y+         + +  F      +L  
Sbjct: 180 FVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR 239
Query: 274 FVKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALS-----------------IWV 316
             +L       L  E   + V+ L+   L +  +A   ++                 + +
Sbjct: 240 LFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSI 299
Query: 317 RVSNELGAGNGKGARFATIVSVVTSIAIGVXXXXXXXXXHNELALIFSSSEAILQVVSKM 376
           RV ++LG  + KGA  A  V ++T +A              ++AL+++ ++ ++ +  ++
Sbjct: 300 RVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQL 359
Query: 377 SILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLG---WVFHQ-- 431
            +  A    +++VQ V +G   G    + + +     Y+++G+P G +LG   W+  Q  
Sbjct: 360 LLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPL 419
Query: 432 GVMGIWAGMIFGGTA 446
           G  G W G I G +A
Sbjct: 420 GAKGFWLGFIIGLSA 434

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query476
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 7e-69
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  226 bits (577), Expect = 7e-69
 Identities = 79/431 (18%), Positives = 179/431 (41%), Gaps = 30/431 (6%)

Query: 42  TLTRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFN 101
               R+  E+  L  +  P + + +A   M  +    AG +  +++AA+SIA ++ +   
Sbjct: 2   NSVHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS- 60

Query: 102 FGLLLGMASALETLCGQAFGGKKYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLG 161
               +G+  AL  +  Q  G  + + +   + +  I+  +  V ++ +      +++ + 
Sbjct: 61  ILFGVGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMD 120

Query: 162 QPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVIAWVSLASLLVHLLVTWLF 221
             + +A  +      ++    ++     L+ F      T     +    LL+++ + W+F
Sbjct: 121 VEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIF 180

Query: 222 VYKM----QLGLIGTAITLSFSWWVLIFGMFGYVACGGCPR---TWTGFSMEAFSDLWEF 274
           VY      +LG +G  +  +  +W+++  +  Y+           +  F      +L   
Sbjct: 181 VYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRL 240

Query: 275 VKLSVASGVMLCLENWYYRVLILMTGNLQNAKIAVD--ALSIW---------------VR 317
            +L       L  E   + V+ L+   L +  +A    AL+                 +R
Sbjct: 241 FRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIR 300

Query: 318 VSNELGAGNGKGARFATIVSVVTSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMS 377
           V ++LG  + KGA  A  V ++T +A      +L ++F  ++AL+++ ++ ++ +  ++ 
Sbjct: 301 VGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLL 360

Query: 378 ILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGVPLGILLGWV-----FHQG 432
           +  A    +++VQ V +G   G    + + +     Y+++G+P G +LG          G
Sbjct: 361 LFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLG 420

Query: 433 VMGIWAGMIFG 443
             G W G I G
Sbjct: 421 AKGFWLGFIIG 431

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query476
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.85
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 87.67
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=1.3e-45  Score=370.05  Aligned_cols=414  Identities=19%  Similarity=0.363  Sum_probs=373.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCC
Q 011863           44 TRRFWIESKKLWHIVGPTIFSRMASYSMFVITQAFAGHLGDLELAAISIANTVVVAFNFGLLLGMASALETLCGQAFGGK  123 (476)
Q Consensus        44 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~i~~lg~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~s~~~g~~  123 (476)
                      ++..++..|++++.+.|.+++++...+.+.+|+.+++|+|++++|+++++.++..+ ...+..|++++..+.+++++|++
T Consensus         4 ~~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~-~~~~~~g~~~~~~~~is~~~g~~   82 (460)
T 3mkt_A            4 VHRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLP-SILFGVGLLMALVPVVAQLNGAG   82 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHH-HHHHHHHHHHHHGGGCTTTTSSS
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC
Confidence            34556789999999999999999999999999999999999999999999999887 77788999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHchhhhHH
Q 011863          124 KYYMLGVYMQRSWIVLFICCVLLLPLYVFASPVLKLLGQPDDVAELSGVVSLWLLPVHFSFAFQFPLQRFLQSQLKTMVI  203 (476)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~a~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~  203 (476)
                      |+++.++.+++++.+..+.+++..+++.+.++++.+++.+++..+.+..|+++.+++.++..+.....+++++.||++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~  162 (460)
T 3mkt_A           83 RQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA  162 (460)
T ss_dssp             STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            99999999999999999999887767788888888888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh-c---CCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCc---cCCCChhhHHhHHHHHH
Q 011863          204 AWVSLASLLVHLLVTWLFVYK-M---QLGLIGTAITLSFSWWVLIFGMFGYVACGGCPRT---WTGFSMEAFSDLWEFVK  276 (476)
Q Consensus       204 ~~~~i~~~~~~i~l~~~li~~-~---~~gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  276 (476)
                      ++.++++.++|+++++++++. +   ++|+.|+++|+.+++++..++..++.++++...+   +.++.+.+++.+|++++
T Consensus       163 ~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  242 (460)
T 3mkt_A          163 MVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR  242 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHH
Confidence            999999999999999999975 3   6899999999999999999988888877632221   12233445578889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH-----------------HHHHHhhcCCChhhHHHHHHHHHH
Q 011863          277 LSVASGVMLCLENWYYRVLILMTGNLQNAKIAVDALSIW-----------------VRVSNELGAGNGKGARFATIVSVV  339 (476)
Q Consensus       277 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~i~-----------------~~~s~~~g~~~~~~~~~~~~~~~~  339 (476)
                      +++|.+++.....+.+.+++.+++++|+.+++....+..                 |.+++++|++|+++.++..+++.+
T Consensus       243 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~  322 (460)
T 3mkt_A          243 LGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM  322 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998776553322111                 999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhhHhHHhhHhhccCcchhhHHHHHHHHHHHHH
Q 011863          340 TSIAIGVFFFILILIFHNELALIFSSSEAILQVVSKMSILLAFTILLNSVQPVLSGVAVGSGWQSIVAYINLGCYYLIGV  419 (476)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~~~~i  419 (476)
                      +.+.++++.++++.++++++.++|++|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.++++.|++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  402 (460)
T 3mkt_A          323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL  402 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999899999999999999999999999999999999999999999999789999


Q ss_pred             HHHHHHHHh----hc-CCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 011863          420 PLGILLGWV----FH-QGVMGIWAGMIFGGTAVQTLILAIITMRC  459 (476)
Q Consensus       420 ~~~~~l~~~----~~-~g~~g~~~a~~~i~~~~~~~~~~~~~~~~  459 (476)
                      |+.+++...    ++ +|..|+|+++. +++.+..++..++++|.
T Consensus       403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~-~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          403 PTGYILGMTNWLTEQPLGAKGFWLGFI-IGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHTSSCCSSHHHHHHHHHH-HHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHhhhhccccccCchhHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            999999955    45 99999999999 99999988777666654
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00