Citrus Sinensis ID: 011883

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----

MRTHKSSLHGHNSRRPTLLHLVCVAAIFGFLVFALQSIFLTGNRISDLYREEVRTLSGFQLNVQQCVANRGLGLTAKIIDHCKLVLKFPEGTNSTWYNEQFKIYEPLEYAYDVCEAILLWEQYRNMTTVLTREYLDARPDGWLEYAAKRIAQLGADKCYNRTLCEEHLNLILPAKPPFRPRQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVAILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRAERKQDWSDVPSREMISRAHAAALRLKRGQSGDLGQFGSCKVWGKVDDDSSGPISGSPDMSDVRKKSNYSKWETMPFKSLRKEAQDHYFQMEGVSLYKMDGNRLDDLVCVKHPSKSEVQ

cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHHHcccccccEEcccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEHHHEEHHccccccccccHHHHHHHHHcccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHccccccEEEEEcccccccccEEEEccccEEEEHHHHHHccccccHHHHHHHHHHcccEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHcccEEEEccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEccccccccEEEEEcccccccc

cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccEEEEccccccccccccccccccccEEcccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccEEEEEEccccccccccccccccccEEEEEccccccccccHHcccccEEEEEcHHHHHHHHHcHccccccEEEEEcHcccccccEEEEccccHHHHHHHHHccccccHHHHHHHHHHHHHHHEEEEEcccccccccccEEEccccccccccHHHHHHHHHHHcccEEEEccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccHHHHHHcccccHcccccHHHHHHHHHHHHHHHccccEEcccccccccEEEEEcccccccc

mrthksslhghnsrrptLLHLVCVAAIFGFLVFALQSIFLTGNRISDLYREEVRTLSGFQLNVQQCVANRGLGLTAKIIDHCKLVlkfpegtnstwyneqfkiyepleYAYDVCEAILLWEQYRNMTTVLTREYLDARPDGWLEYAAKRIAQLgadkcynrtLCEEHlnlilpakppfrprqfkkcavvgnsgdllktefgeeidshdavirdneapvnqrYAKHVGLKRDFRLVVRGAARNMVAILKGSTDEVLIIKSVTHKDFNAmiksipnpvyLFQGIVlrrgakgtgmKSIELALSMCDivdiygftvdpgytewtryfstprkghnplqgrAYYQLLECLGVirihspmraerkqdwsdvpsrEMISRAHAAALRLkrgqsgdlgqfgsckvwgkvdddssgpisgspdmsdvrkksnyskwetmpfkslrKEAQDHYFQMEGvslykmdgnrlddlvcvkhpsksevq

mrthksslhghnsrrpTLLHLVCVAAIFGFLVFALQSIFLTGNRISDLYREEVRTLSGFQLNVQQCVANRGLGLTAKIIDHCKLVLKFPEGTNSTWYNEQFKIYEPLEYAYDVCEAILLWEQYRNMTTVLTREYLDARPDGWLEYAAKRIAQLGADKCYNRTLCEEHLNLILPAKPPFRPRQFKKCAVVGNSGDLLKTEfgeeidshdavirdneapvnqryakhvglkrdfrLVVRGAARNMvailkgstdevLIIKSVTHKDFNAMIKSIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIhspmraerkqdwsdvpsrEMISRAHAAALRlkrgqsgdlgqFGSCKVWgkvdddssgpisgspdmsdvrkksnyskwETMPFKSLRKEAQDHYFQMEGVSLYKMDGNRLDDLVCVkhpsksevq

MRTHKSSLHGHNSRRPTLLHLVCVAAIFGFLVFALQSIFLTGNRISDLYREEVRTLSGFQLNVQQCVANRGLGLTAKIIDHCKLVLKFPEGTNSTWYNEQFKIYEPLEYAYDVCEAILLWEQYRNMTTVLTREYLDARPDGWLEYAAKRIAQLGADKCYNRTLCEEHLNLILPAKPPFRPRQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVAILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRAERKQDWSDVPSREMISRAHAAALRLKRGQSGDLGQFGSCKVWGKVdddssgpisgspdmsdVRKKSNYSKWETMPFKSLRKEAQDHYFQMEGVSLYKMDGNRLDDLVCVKHPSKSEVQ

****************TLLHLVCVAAIFGFLVFALQSIFLTGNRISDLYREEVRTLSGFQLNVQQCVANRGLGLTAKIIDHCKLVLKFPEGTNSTWYNEQFKIYEPLEYAYDVCEAILLWEQYRNMTTVLTREYLDARPDGWLEYAAKRIAQLGADKCYNRTLCEEHLNLILPAKPPFRPRQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVAILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHS************************************LGQFGSCKVWG*****************************************DHYFQMEGVSLYKMDGNRLDDLVCV*********

*****************LLHLVCVAAIFGFLVFALQSIFLTGNRI*************************GLGLTAKIIDHCKLVLKFPE***************PLEYAYDVCEAILLWEQYRNMTTVLTREYLDARPDGWLEYAAKRIAQLGADKCYNRTLCEEHLNLILPAKPPFRPRQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVAILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRA**********SREMISRAH********************************************************FKSLRKEAQDHYFQMEGVSLYKMDGNRLDDLVC**********

************SRRPTLLHLVCVAAIFGFLVFALQSIFLTGNRISDLYREEVRTLSGFQLNVQQCVANRGLGLTAKIIDHCKLVLKFPEGTNSTWYNEQFKIYEPLEYAYDVCEAILLWEQYRNMTTVLTREYLDARPDGWLEYAAKRIAQLGADKCYNRTLCEEHLNLILPAKPPFRPRQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVAILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPM************SREMISRAHAAALRLKRGQSGDLGQFGSCKVWGKVDDDSSGPISGSPDMSDVRKKSNYSKWETMPFKSLRKEAQDHYFQMEGVSLYKMDGNRLDDLVCVKHPSKSEVQ

************SRRPTLLHLVCVAAIFGFLVFALQSIFLTGNRISDLYREEVRTLSGFQLNVQQCVANRGLGLTAKIIDHCKLVLKFPEGTNSTWYNEQFKIYEPLEYAYDVCEAILLWEQYRNMTTVLTREYLDARPDGWLEYAAKRIAQLGADKCYNRTLCEEHLNLILPAKPPFRPRQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVAILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRAERKQDWSDVPSREMISRAHAAALRLKRGQSGDLGQFGSCKVWGKVD*************SDVRKKSNYSKWETMPFKSLRKEAQDHYFQMEGVSLYKMDGNRLDDLVCVKHP******

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SSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		475	2.2.26 [Sep-21-2011]
Q11205		350	CMP-N-acetylneuraminate-b	yes	no	0.408	0.554	0.286	3e-13
Q11204		350	CMP-N-acetylneuraminate-b	yes	no	0.408	0.554	0.286	4e-13
Q6KB58		350	CMP-N-acetylneuraminate-b	yes	no	0.408	0.554	0.277	9e-13
Q16842		350	CMP-N-acetylneuraminate-b	yes	no	0.408	0.554	0.277	9e-13
P61645		359	CMP-N-acetylneuraminate-p	no	no	0.315	0.417	0.365	5e-12
Q92187		359	CMP-N-acetylneuraminate-p	no	no	0.315	0.417	0.365	5e-12
Q6ZXC9		359	CMP-N-acetylneuraminate-p	no	no	0.315	0.417	0.360	1e-11
P54751		337	CMP-N-acetylneuraminate-b	no	no	0.303	0.427	0.313	2e-11
Q64692		359	CMP-N-acetylneuraminate-p	no	no	0.315	0.417	0.360	3e-11
Q64690		359	CMP-N-acetylneuraminate-p	yes	no	0.315	0.417	0.360	3e-11

>sp\|Q11205\|SIA4B_RAT CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 2 OS=Rattus norvegicus GN=St3gal2 PE=2 SV=1	Back alignment and function desciption

 Score = 77.0 bits (188), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 110/234 (47%), Gaps = 40/234 (17%)

Query: 125 NMTTVLTREYLDARPD---GWLEYAAKRIAQLGADKCYNRTLCEEHLNLILPAKPPFR-- 179
           N++ V TR+ ++  PD    W+    +        K +N     E L  I+P + P+R  
Sbjct: 92  NISPVWTRDNMNLTPDVQRWWMMLQPQF-------KSHNTNEVLEKLFQIVPGENPYRFR 144

Query: 180 -PRQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRG 238
            P+Q ++CAVVGNSG+L  + +G+E+DSH+ ++R N+AP    + K VG +     +   
Sbjct: 145 DPQQCRRCAVVGNSGNLRGSGYGQEVDSHNFIMRMNQAPT-VGFEKDVGSRTTHHFMYPE 203

Query: 239 AARNM------VAILKGSTDEVLIIKSVTHKDFN---AMIKS----------IPNPVYLF 279
           +A+N+      V +   + D + I  +++        A +KS          I NP + F
Sbjct: 204 SAKNLPANVSFVLVPFKALDLMWIASALSTGQIRFTYAPVKSFLRVDKEKVQIYNPAF-F 262

Query: 280 QGIVLRRGAK-----GTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPR 328
           + I  R          TGM  +  AL +CD V++YGF  D     W  Y+   R
Sbjct: 263 KYIHDRWTEHHGRYPSTGMLVLFFALHVCDEVNVYGFGAD-SRGNWHHYWENNR 315

It may be responsible for the synthesis of the sequence NeuAc-alpha-2,3-Gal-beta-1,3-GalNAc- found in terminal carbohydrate groups of certain glycoproteins, oligosaccharides and glycolipids. SIAT4A and SIAT4B sialylate the same acceptor substrates but exhibit different Km values.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 4

>sp\|Q11204\|SIA4B_MOUSE CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 2 OS=Mus musculus GN=St3gal2 PE=2 SV=2	Back alignment and function description

>sp\|Q6KB58\|SIA4B_PANTR CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 2 OS=Pan troglodytes GN=ST3GAL2 PE=2 SV=1	Back alignment and function description

>sp\|Q16842\|SIA4B_HUMAN CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 2 OS=Homo sapiens GN=ST3GAL2 PE=2 SV=1	Back alignment and function description

>sp\|P61645\|SIA8D_PANTR CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase OS=Pan troglodytes GN=ST8SIA4 PE=2 SV=1	Back alignment and function description

>sp\|Q92187\|SIA8D_HUMAN CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase OS=Homo sapiens GN=ST8SIA4 PE=1 SV=1	Back alignment and function description

>sp\|Q6ZXC9\|SIA8D_BOVIN CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase OS=Bos taurus GN=ST8SIA4 PE=2 SV=1	Back alignment and function description

>sp\|P54751\|SIA4A_MOUSE CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1 OS=Mus musculus GN=St3gal1 PE=2 SV=1	Back alignment and function description

>sp\|Q64692\|SIA8D_MOUSE CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase OS=Mus musculus GN=St8sia4 PE=2 SV=1	Back alignment and function description

>sp\|Q64690\|SIA8D_CRIGR CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase OS=Cricetulus griseus GN=ST8SIA4 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		475
449455926		480	PREDICTED: alpha-2,8-sialyltransferase 8	0.997	0.987	0.839	0.0
449492932		479	PREDICTED: LOW QUALITY PROTEIN: CMP-N-ac	0.995	0.987	0.833	0.0
224128818		474	predicted protein [Populus trichocarpa]	0.972	0.974	0.820	0.0
255543563		448	alpha-2,8-sialyltransferase 8b, putative	0.934	0.991	0.850	0.0
359488433		478	PREDICTED: uncharacterized protein LOC10	0.974	0.968	0.803	0.0
356571634		475	PREDICTED: uncharacterized protein LOC10	0.989	0.989	0.782	0.0
350538381		469	sialyltransferase-like protein [Solanum	0.968	0.980	0.802	0.0
356571632		485	PREDICTED: uncharacterized protein LOC10	0.989	0.969	0.768	0.0
70663512		469	sialyltransferase-like protein [Solanum	0.968	0.980	0.797	0.0
356560436		520	PREDICTED: uncharacterized protein LOC10	0.989	0.903	0.762	0.0

>gi\|449455926\|ref\|XP_004145701.1\| PREDICTED: alpha-2,8-sialyltransferase 8E-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  834 bits (2155), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/480 (83%), Positives = 426/480 (88%), Gaps = 6/480 (1%)

Query: 1   MRTHK-SSLHGHNSRRPTLLHLVCVAAIFGFLVFALQSIFLTG--NRISDLYREEVRTLS 57
           MR+ K +S +    RR TLLHLVC AA+F FLVF +QS F  G    + DL REEVR LS
Sbjct: 1   MRSLKPASSNNGVGRRLTLLHLVCAAALFSFLVFVIQSSFFAGYHQPLVDLNREEVRILS 60

Query: 58  GFQLNVQQCVANRGLGLTAKIIDHCKLVLKFPEGTNSTWYNEQFKIYEPLEYAYDVCEAI 117
            FQ NVQQCVANRGLGLTA IIDHCKL+LKFPEGTNSTWYNEQFKIYEPLEY YDVCEAI
Sbjct: 61  DFQSNVQQCVANRGLGLTAHIIDHCKLILKFPEGTNSTWYNEQFKIYEPLEYPYDVCEAI 120

Query: 118 LLWEQYRNMTTVLTREYLDARPDGWLEYAAKRIAQLGADKCYNRTLCEEHLNLILPAKPP 177
           LLWEQYRNMTTVLTREYLDARPDGW +YAAKRIAQLGADKCYNR+LCEEHLNLILP+KPP
Sbjct: 121 LLWEQYRNMTTVLTREYLDARPDGWFDYAAKRIAQLGADKCYNRSLCEEHLNLILPSKPP 180

Query: 178 FRPRQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVR 237
           F PRQFK CAVVGNSGDLLKTEFG+EIDSHDAVIRDNEAPVN++YAK+VGLKRDFRLVVR
Sbjct: 181 FHPRQFKTCAVVGNSGDLLKTEFGDEIDSHDAVIRDNEAPVNEKYAKYVGLKRDFRLVVR 240

Query: 238 GAARNMVAILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYLFQGIVLRRGAKGTGMKSIE 297
           GAARNM+AIL GS DEVL+IKSV H+DFNAMIK IPNPVYLFQGIVLRRGAKGTGMKSIE
Sbjct: 241 GAARNMIAILNGSDDEVLVIKSVIHRDFNAMIKLIPNPVYLFQGIVLRRGAKGTGMKSIE 300

Query: 298 LALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRA 357
           LALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMR+
Sbjct: 301 LALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRS 360

Query: 358 ERKQDWSDVPSREMISRAHAAALRLKR---GQSGDLGQFGSCKVWGKVDDDSSGPISGSP 414
           ERKQDWSDVP REMI  AHAAAL LK+   GQ GDLGQFGSCKVWG V+  + GPISGSP
Sbjct: 361 ERKQDWSDVPDREMIRMAHAAALSLKKSQSGQGGDLGQFGSCKVWGNVEPGTEGPISGSP 420

Query: 415 DMSDVRKKSNYSKWETMPFKSLRKEAQDHYFQMEGVSLYKMDGNRLDDLVCVKHPSKSEV 474
           DMSD RK S+YSKWE  PF SLRKEAQDHY QMEGVSLYKMDGN+LDDLVCVKH   S V
Sbjct: 421 DMSDSRKHSSYSKWELTPFNSLRKEAQDHYKQMEGVSLYKMDGNKLDDLVCVKHSLDSVV 480

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|449492932\|ref\|XP_004159145.1\| PREDICTED: LOW QUALITY PROTEIN: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2, 3-sialyltransferase 1-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224128818\|ref\|XP_002320429.1\| predicted protein [Populus trichocarpa] gi\|222861202\|gb\|EEE98744.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255543563\|ref\|XP_002512844.1\| alpha-2,8-sialyltransferase 8b, putative [Ricinus communis] gi\|223547855\|gb\|EEF49347.1\| alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359488433\|ref\|XP_002275669.2\| PREDICTED: uncharacterized protein LOC100258280 [Vitis vinifera] gi\|296082274\|emb\|CBI21279.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356571634\|ref\|XP_003553981.1\| PREDICTED: uncharacterized protein LOC100527382 isoform 2 [Glycine max]	Back alignment and taxonomy information

>gi\|350538381\|ref\|NP_001234852.1\| sialyltransferase-like protein [Solanum lycopersicum] gi\|83318894\|emb\|CAJ15147.2\| sialyltransferase-like protein [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|356571632\|ref\|XP_003553980.1\| PREDICTED: uncharacterized protein LOC100527382 isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|70663512\|emb\|CAJ15155.1\| sialyltransferase-like protein [Solanum tuberosum]	Back alignment and taxonomy information

>gi\|356560436\|ref\|XP_003548498.1\| PREDICTED: uncharacterized protein LOC100800355 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		475
TAIR\|locus:2025540		474	MGP2 "MALE GAMETOPHYTE DEFECTI	0.974	0.976	0.760	2.4e-195
TAIR\|locus:2099468		440	AT3G48820 [Arabidopsis thalian	0.791	0.854	0.474	1.6e-94
RGD\|68413		350	St3gal2 "ST3 beta-galactoside	0.24	0.325	0.325	1.8e-11
UNIPROTKB\|Q11205		350	St3gal2 "CMP-N-acetylneuramina	0.24	0.325	0.325	1.8e-11
MGI\|MGI:99427		350	St3gal2 "ST3 beta-galactoside	0.24	0.325	0.325	2.3e-11
UNIPROTKB\|Q92187		359	ST8SIA4 "CMP-N-acetylneuramina	0.149	0.197	0.561	2.4e-11
UNIPROTKB\|Q6H8M9		350	siat4B "ST3 beta-galactoside a	0.24	0.325	0.325	4e-11
UNIPROTKB\|F1MVI9		359	ST8SIA4 "CMP-N-acetylneuramina	0.149	0.197	0.547	4.1e-11
UNIPROTKB\|Q6ZXC9		359	ST8SIA4 "CMP-N-acetylneuramina	0.149	0.197	0.547	4.1e-11
UNIPROTKB\|E2R623		359	ST8SIA4 "Uncharacterized prote	0.149	0.197	0.547	4.1e-11

TAIR\|locus:2025540 MGP2 "MALE GAMETOPHYTE DEFECTIVE 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
 Identities = 359/472 (76%), Positives = 394/472 (83%)

Query:     8 LHGHNS-RRPTLLHLVCVAAIFGFLVFALQSIFLT-GNRISDLYREEVRTLSGFQLNVQQ 65
             +  H + R+  LL L+   A+F   VF +QS F    NR  DL  E+++ LS FQ +VQQ
Sbjct:     1 MRSHQAGRKLPLLQLLGCVAVFSVFVFTIQSSFFADNNRKLDLQPEDIQILSDFQSSVQQ 60

Query:    66 CVANRGLGLTAKIIDHCKLVLKFPEGTNSTWYNEQFKIYEPLEYAYDVCEAILLWEQYRN 125
             CVANRGLGL+A IIDHC L+LKFPEGTNSTWYN QFK++E LE+ Y+VCEA+LLWEQYRN
Sbjct:    61 CVANRGLGLSAHIIDHCNLILKFPEGTNSTWYNAQFKVFEALEFKYNVCEAVLLWEQYRN 120

Query:   126 MTTVLTREYLDARPDGWLEYAAKRIAQLGADKCYNRTLCEEHLNLILPAKPPFRPRQFKK 185
             MTTVLTREYLD RPDGWL+YAA RIAQLGADKCYNRTLCEEHLN+ILPAKPPF PRQF K
Sbjct:   121 MTTVLTREYLDVRPDGWLDYAAMRIAQLGADKCYNRTLCEEHLNVILPAKPPFHPRQFHK 180

Query:   186 CAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNMVA 245
             CAVVGNSGDLLKTEFGEEIDSHDAV RDNEAPVN++YAK+VG+KRDFRLVVRGAARNM+ 
Sbjct:   181 CAVVGNSGDLLKTEFGEEIDSHDAVFRDNEAPVNEKYAKYVGVKRDFRLVVRGAARNMIK 240

Query:   246 ILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDI 305
             IL GS +EVLIIKSVTH+DFN MIK IPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDI
Sbjct:   241 ILNGSDNEVLIIKSVTHRDFNEMIKRIPNPVYLFQGIVLRRGAKGTGMKSIELALSMCDI 300

Query:   306 VDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRAERKQDWSD 365
             VDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMR+ERK+DWS 
Sbjct:   301 VDIYGFTVDPGYTEWTRYFSTPRKGHNPLQGRAYYQLLECLGVIRIHSPMRSERKEDWSS 360

Query:   366 VPSREMISRAHAAALRLKRGQS------GDLGQFGSCKVWGKVXXXXXXXXXXXXXXXXV 419
             VPSREMISRAH AALRL+R Q          GQFG+CKVWG                   
Sbjct:   361 VPSREMISRAHTAALRLQRSQQPTSSKRDGSGQFGNCKVWGDADPTKGPVSGSPDMSET- 419

Query:   420 RKKSNYSKWETMPFKSLRKEAQDHYFQMEGVSLYKMDGNRLDDLVCVKHPSK 471
             RKKSNY KWE MPF+SLRKEA+DHY QM+GVS YKMDGN+LDDLVCV+HP K
Sbjct:   420 RKKSNYKKWEVMPFRSLRKEARDHYIQMKGVSQYKMDGNKLDDLVCVRHPLK 471

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008373 "sialyltransferase activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

GO:0009846 "pollen germination" evidence=IMP

GO:0009860 "pollen tube growth" evidence=IMP

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR\|locus:2099468 AT3G48820 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

RGD\|68413 St3gal2 "ST3 beta-galactoside alpha-2,3-sialyltransferase 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q11205 St3gal2 "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransfe rase 2" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

MGI\|MGI:99427 St3gal2 "ST3 beta-galactoside alpha-2,3-sialyltransferase 2" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q92187 ST8SIA4 "CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6H8M9 siat4B "ST3 beta-galactoside alpha-2,3-sialyltransferase 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MVI9 ST8SIA4 "CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6ZXC9 ST8SIA4 "CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E2R623 ST8SIA4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.99	0.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00140923	hypothetical protein (474 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		475
pfam00777		268	pfam00777, Glyco_transf_29, Glycosyltransferase fa	3e-49

>gnl\|CDD\|216114 pfam00777, Glyco_transf_29, Glycosyltransferase family 29 (sialyltransferase)	Back alignment and domain information

 Score =  169 bits (430), Expect = 3e-49
 Identities = 67/256 (26%), Positives = 96/256 (37%), Gaps = 45/256 (17%)

Query: 143 LEYAAKRIAQLGADKCYNRTLCEEHLNLILPAKPPFRPRQ---FKKCAVVGNSGDLLKTE 199
           L     ++      +     L  E L+ +LP   PF  +Q    ++CAVVGN G L  + 
Sbjct: 15  LGERLYKLWYPLGLRGSE-PLISEALSSLLPKDSPFLLKQSGRCRRCAVVGNGGILKNSS 73

Query: 200 FGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARN----------MVAILKG 249
            G+EIDSHD VIR N AP  + Y K VG K   R     +A             V +   
Sbjct: 74  LGKEIDSHDFVIRCNLAPT-KGYEKDVGSKTTLRTFNPESAPKSYQELDRNTFFVLVPFK 132

Query: 250 STDEVLII--------------KSVTHKDFNAMIK-SIPNPVYLFQ--GIVLRRGAKG-- 290
             D + +               K V  +      K  I NP +L       L +      
Sbjct: 133 GLDLLWLPAFLTKGLGTYRSFWKYVALRIPLDPQKVRILNPEFLRYVANFWLEKPEGIHG 192

Query: 291 ----TGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFS--TPRKG-----HNPLQGRAY 339
               TG+ ++ LAL +CD V +YGF           Y+    P+       H+       
Sbjct: 193 KRPSTGLLALTLALHLCDEVHLYGFGPFDRKPIPHHYYDNVKPKAMTFGAYHDMPYEFLL 252

Query: 340 YQLLECLGVIRIHSPM 355
            + L   GVIR+H+  
Sbjct: 253 LKRLHKQGVIRLHTGK 268

Members of this family belong to glycosyltransferase family 29. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		475
PF00777		266	Glyco_transf_29: Glycosyltransferase family 29 (si	100.0
KOG2692		376	consensus Sialyltransferase [Carbohydrate transpor	100.0
PF06002		291	CST-I: Alpha-2,3-sialyltransferase (CST-I); InterP	95.71

>PF00777 Glyco_transf_29: Glycosyltransferase family 29 (sialyltransferase); InterPro: IPR001675 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

Probab=100.00  E-value=4e-51  Score=402.59  Aligned_cols=190  Identities=32%  Similarity=0.450  Sum_probs=109.5

Q ss_pred             hhHHHhhhcCCCCCCCCCCC----cceEEEEcCCCCCCCCcCCcccccccceeecCCCcccccccCCCCccceeEeecch
Q 011883          163 LCEEHLNLILPAKPPFRPRQ----FKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRG  238 (475)
Q Consensus       163 ~~~~~L~~llP~~~P~~~~~----c~rCAVVGNSGiL~gS~~G~eIDshD~ViR~N~APv~~GyE~DVGsKTt~r~~~~~  238 (475)
                      .+.+.|..++|..+|+...+    |+|||||||||||+||+||+|||+||||||||.||+ +|||+|||+|||++++|++
T Consensus        34 ~i~~~l~~l~~~~~p~~~~~~~~~~~~CAVVGNsGiL~~S~~G~eID~~D~ViR~N~aP~-~gfe~DVG~kT~~~~~n~~  112 (266)
T PF00777_consen   34 KISKELYKLLPESSPFSLKHFKRRCRTCAVVGNSGILLGSGCGKEIDSHDFVIRMNLAPV-KGFEKDVGSKTTLRTMNPS  112 (266)
T ss_dssp             -HHHHHHHHTTT-S-S---TTTTG--EEEEE--BGGGTT---HHHHHTSSEEEEETT----TT-HHHH-S--SEEEEBTT
T ss_pred             hHHHHHHHhCcccCccccccccCCCCeEEEEcCChHhccCccccccccCeeEEecCCccc-cccccccCccccccccChh
Confidence            34677899999888875555    999999999999999999999999999999999997 8999999999999999999


Q ss_pred             hhhhHHHhhcCCCCeEEEEec----------cchhhH--------------HHHHh-hcCCchhhhhh---hhh---ccC
Q 011883          239 AARNMVAILKGSTDEVLIIKS----------VTHKDF--------------NAMIK-SIPNPVYLFQG---IVL---RRG  287 (475)
Q Consensus       239 s~~~~~~~l~~~~d~~~iik~----------~~~~d~--------------~~~ik-~i~nP~~l~~~---~~~---~~~  287 (475)
                      ++...... .........+..          +.....              ....+ .+.||.++...   |..   ...
T Consensus       113 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  191 (266)
T PF00777_consen  113 SLQRRYNL-LDKDTFLVLLPFKGSDLVWLPAFSSKKNTRKSFWAYKALEKKYPNQKVRILHPEFLRYIWRFWLRRGGRGN  191 (266)
T ss_dssp             B----------TT-EEEE--SSHHHHHHHHHHTTT-----BSSSB--S-----GGGEEEB-HHHHHHHHHHTSTT---SS
T ss_pred             Hhhhhccc-cccccceeccccccchhhhhhhhhccccccccccchhhhhhccCcceeeecCHHHHhhHHHHhhhhhcccc
Confidence            98432121 111111111110          000000              00001 46788876532   221   234


Q ss_pred             CCCcHHHHHHHHHhcCCeEEEeeeeeCCCCCccccccCCC-------CCCCCchhHHHHHHHHHhcCcEEEEcc
Q 011883          288 AKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTP-------RKGHNPLQGRAYYQLLECLGVIRIHSP  354 (475)
Q Consensus       288 ~PSTG~l~l~lALhlCDeV~lYGF~~d~~y~~~~HYyd~~-------~~~Hd~~~E~~l~~~Lh~~GvI~Lh~p  354 (475)
                      +||||++++++||++||||+||||||..+...++||||+.       ...|+|..|+++|++||++|+|++|++
T Consensus       192 ~pSTG~~~~~~Al~~CD~V~lYGF~p~~~~~~~~HYyd~~~~~~~~~~~~H~~~~E~~~~~~L~~~Gvi~l~~g  265 (266)
T PF00777_consen  192 RPSTGLMAVSLALHFCDEVHLYGFWPPDNRTVPYHYYDNVKPKPCFFYKNHDMPAEFRLLKRLHKQGVIKLHTG  265 (266)
T ss_dssp             S--HHHHHHHHHHHH-SEEEEES-S---TTS---BTTB------------S-HHHHHHHHHHHHHTTSSEEE--
T ss_pred             CCCccHHHHHHHhcCCCeEEEEEEEecCCCCCccccccCccccccCCCCCCCCHHHHHHHHHHHHCCCeEEecC
Confidence            7999999999999999999999999954567889999983       246999999999999999999999975

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 29 (GT29 from CAZY) comprises enzymes with a number of known activities; sialyltransferase (2.4.99 from EC), beta-galactosamide alpha-2,6-sialyltransferase (2.4.99.1 from EC), alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase (2.4.99.3 from EC), beta-galactoside alpha-2,3-sialyltransferase (2.4.99.4 from EC), N-acetyllactosaminide alpha-2,3-sialyltransferase (2.4.99.6 from EC), alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase (2.4.99.8 from EC); lactosylceramide alpha-2,3-sialyltransferase (2.4.99.9 from EC). These enzymes use a nucleotide monophosphosugar as the donor (CMP-NeuA) instead of a nucleotide diphosphosugar. Sialyltransferase may be responsible for the synthesis of the sequence NEUAC-Alpha-2,3-GAL-Beta-1,3-GALNAC-, found on sugar chains O-linked to thr or ser and also as a terminal sequenec on certain gagnliosides. These enzymes catalyse sialyltransfer reactions during glycosylation, and are type II membrane proteins.; GO: 0008373 sialyltransferase activity, 0006486 protein glycosylation, 0030173 integral to Golgi membrane; PDB: 2WNF_A 2WML_A 2WNB_A.

>KOG2692 consensus Sialyltransferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF06002 CST-I: Alpha-2,3-sialyltransferase (CST-I); InterPro: IPR009251 This entry represents several alpha-2,3-sialyltransferase (2	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		475
2wnb_A		298	Crystal Structure Of A Mammalian Sialyltransferase		2e-11
2wml_A		298	Crystal Structure Of A Mammalian Sialyltransferase		2e-11

>pdb|2WNB|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In Complex With Disaccharide And Cmp Length = 298

Back alignment and structure

Iteration: 1

Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 32/177 (18%) Query: 184 KKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAP-------VNQRYAKHVGLKRDFRLVV 236 ++CAVVGNSG+L ++ +G +IDSHD V+R N+AP V + H FR + Sbjct: 98 RRCAVVGNSGNLKESYYGPQIDSHDFVLRXNKAPTEGFEADVGSKTTHHFVYPESFRELA 157 Query: 237 RGAARNMVAILKGSTDEVLIIKSVTHKDFNAMIKSIPNPVYL-----------FQGIVLR 285 + + +V +TD +I + T + +P + + F V Sbjct: 158 QEVSXILVPF--KTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFD 215 Query: 286 RGAKG------TGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPRKGHNPLQG 336 R +G TG+ S+ +L +CD VD+YGF D W Y+ +NP G Sbjct: 216 RWLQGHGRYPSTGILSVIFSLHICDEVDLYGFGAD-SKGNWHHYWE-----NNPSAG 266

PyMOL of 2wnb

>pdb|2WML|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase Length = 298

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		475
2wnf_A		298	CMP-N-acetylneuraminate-beta-galactosamide-alpha-	1e-30
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A Length = 298	Back alignment and structure

 Score =  119 bits (298), Expect = 1e-30
 Identities = 71/299 (23%), Positives = 114/299 (38%), Gaps = 48/299 (16%)

Query: 97  YNEQFKIYEPLEYAYDVCEAIL------LWEQYR---NMTTVLTREYLDARPDGWLEYAA 147
            +E FK      Y    C   +       W   R   +M  +LT +      D +  +  
Sbjct: 2   LSENFKKLMKYPYRPCTCTRCIEEQRVSAWFDERFNRSMQPLLTAKNAHLEEDTYKWW-- 59

Query: 148 KRIAQLGADKCYNRTLCEEHLNLILPAKPPF---RPRQFKKCAVVGNSGDLLKTEFGEEI 204
            R+ +       N T+  E   ++     P    R    ++CAVVGNSG+L ++ +G +I
Sbjct: 60  LRLQREKQPNNLNDTI-RELFQVVPGNVDPLLEKRLVSCRRCAVVGNSGNLKESYYGPQI 118

Query: 205 DSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARN------MVAILKGSTDEVLIIK 258
           DSHD V+R N+AP  + +   VG K     V   + R       M+ +   +TD   +I 
Sbjct: 119 DSHDFVLRMNKAPT-EGFEADVGSKTTHHFVYPESFRELAQEVSMILVPFKTTDLEWVIS 177

Query: 259 SVTHKDFNAMIKSIPNPVYL-----------FQGIVLRRGAKG------TGMKSIELALS 301
           + T    +     +P  + +           F   V  R  +G      TG+ S+  +L 
Sbjct: 178 ATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFDRWLQGHGRYPSTGILSVIFSLH 237

Query: 302 MCDIVDIYGFTVDPGYTEWTRYFSTPRK--------GHNPLQGRAYYQLLECLGVIRIH 352
           +CD VD+YGF  D     W  Y+              H+         +L  +  IRI 
Sbjct: 238 ICDEVDLYGFGAD-SKGNWHHYWENNPSAGAFRKTGVHDGDFESNVTTILASINKIRIF 295

PyMOL of 2wnf

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		475
2wnf_A		298	CMP-N-acetylneuraminate-beta-galactosamide-alpha-	100.0
1ro7_A		259	Alpha-2,3/8-sialyltransferase; mixed alpha/beta, r	99.82
2wqq_A		291	Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glyc	99.8
2p2v_A		288	Alpha-2,3-sialyltransferase; mixed alpha-beta; HET	99.8

>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A	Back alignment and structure

Probab=100.00  E-value=2.7e-55  Score=439.36  Aligned_cols=240  Identities=27%  Similarity=0.460  Sum_probs=180.5

Q ss_pred             ccccccccceeccCCCCCchhhhhhcccccccccchhhHHHHHHhhhcccCeeccccccccCCCc---chhhhHHHHhhh
Q 011883           77 KIIDHCKLVLKFPEGTNSTWYNEQFKIYEPLEYAYDVCEAILLWEQYRNMTTVLTREYLDARPDG---WLEYAAKRIAQL  153 (475)
Q Consensus        77 ~~~~~C~~~l~~~~~~~s~Wf~~~F~~~~~~~~~f~~~~~vl~w~~~~~~~~~ltre~~~~~p~G---W~~~~~~~i~~~  153 (475)
                      ..+..||.+++.+  +.|+||+++|+                     ++++++||+++...+++.   |+++++.     
T Consensus        14 ~~~~~c~~~~~~~--~~s~~f~~~f~---------------------~~~~~~lt~~~~~~~~~~~~~w~~l~~~-----   65 (298)
T 2wnf_A           14 YRPCTCTRCIEEQ--RVSAWFDERFN---------------------RSMQPLLTAKNAHLEEDTYKWWLRLQRE-----   65 (298)
T ss_dssp             --CCSSSSCTTCS--SSCHHHHHHCC---------------------TTCCCBCCTTTCCCCHHHHHHHHHHHCC-----
T ss_pred             CCCCCCCcccccc--ccCHHHHhHhC---------------------CCCCceeccCcCCCCHHHHHHHHhcccc-----
Confidence            3456899998764  48999999999                     467789999888777764   6554331     


Q ss_pred             ccCcccchhhhHHHhhhcCCCCCC-CCC---CCcceEEEEcCCCCCCCCcCCcccccccceeecCCCcccccccCCCCcc
Q 011883          154 GADKCYNRTLCEEHLNLILPAKPP-FRP---RQFKKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLK  229 (475)
Q Consensus       154 ~~~~~~n~~~~~~~L~~llP~~~P-~~~---~~c~rCAVVGNSGiL~gS~~G~eIDshD~ViR~N~APv~~GyE~DVGsK  229 (475)
                      .  ...+...+.+.|+.++|+..| +..   .+|+|||||||||||+||+||+|||+||||||||.||+ +|||+|||+|
T Consensus        66 ~--~~~~~~~v~~~l~~~lP~~~~~~~~~~~~~~~~CAVVGNsGiL~~S~~G~eIDs~D~ViR~N~aP~-~gye~DVG~K  142 (298)
T 2wnf_A           66 K--QPNNLNDTIRELFQVVPGNVDPLLEKRLVSCRRCAVVGNSGNLKESYYGPQIDSHDFVLRMNKAPT-EGFEADVGSK  142 (298)
T ss_dssp             S--SCCCHHHHHHHHTTTSCSCCCTTTTGGGCSCCEEEEECCBGGGTTCCCHHHHHTSSEEEEETTCCC-TTCHHHHCSC
T ss_pred             c--ccccHHHHHHHHHHhCCCccccccccccCCCCeEEEECCccccCCCCccccccchhheeccCcCCc-CcccccCccC
Confidence            1  112334456778999999876 765   79999999999999999999999999999999999997 8999999999


Q ss_pred             ceeEeecchhhhhHHHhhcCCCCeEEEEeccchhhHH-------------------------HHHhhcCCchhhh---hh
Q 011883          230 RDFRLVVRGAARNMVAILKGSTDEVLIIKSVTHKDFN-------------------------AMIKSIPNPVYLF---QG  281 (475)
Q Consensus       230 Tt~r~~~~~s~~~~~~~l~~~~d~~~iik~~~~~d~~-------------------------~~ik~i~nP~~l~---~~  281 (475)
                      ||++++|++++..+.      .+..+++..+...++.                         .....++||.++.   +.
T Consensus       143 Tt~~~~n~~s~~~~~------~~~~~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~P~~~~~~~~~  216 (298)
T 2wnf_A          143 TTHHFVYPESFRELA------QEVSMILVPFKTTDLEWVISATTTGRISHTYVPVPAKIKVKKEKILIYHPAFIKYVFDR  216 (298)
T ss_dssp             CSEEEEBTTBCCCCC------TTCEEEECCSSHHHHHHHHHHTTTCCCCBSSSBCCSCCCCCGGGEEEBCHHHHHHHHHH
T ss_pred             ceeEEeccccccccC------CCceEEEeecCccchhhhhHhhcCCcccchhhhhhHHhhccCCeEEEeCHHHHHHHHHH
Confidence            999999998764321      1111211111100100                         0001467887653   33


Q ss_pred             hhhccC-CCCcHHHHHHHHHhcCCeEEEeeeeeCCCCCccccccCCCC--------CCCCchhHHHHHHHHHhcCcEEEE
Q 011883          282 IVLRRG-AKGTGMKSIELALSMCDIVDIYGFTVDPGYTEWTRYFSTPR--------KGHNPLQGRAYYQLLECLGVIRIH  352 (475)
Q Consensus       282 ~~~~~~-~PSTG~l~l~lALhlCDeV~lYGF~~d~~y~~~~HYyd~~~--------~~Hd~~~E~~l~~~Lh~~GvI~Lh  352 (475)
                      |....+ +||||++++++||++||||+||||++|. ++.|+||||+..        ..|++..|+++|++||++|+|+||
T Consensus       217 w~~~~~~~pSTG~~~v~lAl~~CDeV~lYGF~~d~-~~~~~HYyd~~~~~~~~~~~~~H~~~~E~~~~~~Lh~~G~i~l~  295 (298)
T 2wnf_A          217 WLQGHGRYPSTGILSVIFSLHICDEVDLYGFGADS-KGNWHHYWENNPSAGAFRKTGVHDGDFESNVTTILASINKIRIF  295 (298)
T ss_dssp             TSTTCSSSCCHHHHHHHHHHHHCSEEEEESCSCCT-TSCCCBTTC-----------CCSCHHHHHHHHHHHHHTTSSEEE
T ss_pred             HHHhCCCCCchhHHHHHHHHHhCCEEEEeeeccCC-CCCceecccCccccccccCCCCCCcHHHHHHHHHHHHCCCEEEE
Confidence            433333 6999999999999999999999999885 667999999852        579999999999999999999999


Q ss_pred             cc
Q 011883          353 SP  354 (475)
Q Consensus       353 ~p  354 (475)
                      ++
T Consensus       296 ~g  297 (298)
T 2wnf_A          296 KG  297 (298)
T ss_dssp             CC
T ss_pred             eC
Confidence            76

PyMOL of 2wnf

>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} SCOP: c.130.1.1 PDB: 1ro8_A* 2drj_A* 2x62_A* 2x61_A* 2x63_A*	Back alignment and structure

>2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransfer; HET: CSF; 2.25A {Campylobacter jejuni}	Back alignment and structure

>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		475
d1ro7a_		258	Alpha-2,3/8-sialyltransferase CstII {Campylobacter	98.42

>d1ro7a_ c.130.1.1 (A:) Alpha-2,3/8-sialyltransferase CstII {Campylobacter jejuni [TaxId: 197]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Alpha-2,3/8-sialyltransferase CstII
superfamily: Alpha-2,3/8-sialyltransferase CstII
family: Alpha-2,3/8-sialyltransferase CstII
domain: Alpha-2,3/8-sialyltransferase CstII
species: Campylobacter jejuni [TaxId: 197]

Probab=98.42  E-value=9.8e-07  Score=84.04  Aligned_cols=164  Identities=16%  Similarity=0.133  Sum_probs=99.8

Q ss_pred             ceEEEEcCCCCCCCCcCCcccccccceeecCCCcccccccCCCCccceeEeecchhhhhH----HHhhcC-CCCeEEEEe
Q 011883          184 KKCAVVGNSGDLLKTEFGEEIDSHDAVIRDNEAPVNQRYAKHVGLKRDFRLVVRGAARNM----VAILKG-STDEVLIIK  258 (475)
Q Consensus       184 ~rCAVVGNSGiL~gS~~G~eIDshD~ViR~N~APv~~GyE~DVGsKTt~r~~~~~s~~~~----~~~l~~-~~d~~~iik  258 (475)
                      +||.|+|||..|++..++..++..| |||||.+-.  -.+.++|.++.+.++.+......    ...... .-....+..
T Consensus         2 Kr~~IlGNGPSLk~iDl~~l~kd~~-vfgcN~fY~--~d~~~~~~~~d~v~~d~~v~~~~y~~~~~i~~~~~~~~~~~~~   78 (258)
T d1ro7a_           2 KKVIIAGNGPSLKEIDYSRLPNDFD-VFRCNQFYF--EDKYYLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETELIMC   78 (258)
T ss_dssp             CEEEEECCSGGGGCCCTTSCCSSEE-EEEETTGGG--CSEETTCSEEEEEEECGGGHHHHHHHHHHHHHTTSCEEEEEEE
T ss_pred             ceEEEEecChhcccCCHhHccCCCe-EEEEcchhh--cchhhcCCcceEEEcccceeeccccceeeeeccchhhhhhhhc
Confidence            6999999999999999999989887 999999974  35678999999999887654322    111111 111111221


Q ss_pred             c-cchh---h--HHHHH-hhcC-----------Cchhhhhhhh---hccCCCCcHHHHHHHHHhc-CCeEEEeeeeeCCC
Q 011883          259 S-VTHK---D--FNAMI-KSIP-----------NPVYLFQGIV---LRRGAKGTGMKSIELALSM-CDIVDIYGFTVDPG  316 (475)
Q Consensus       259 ~-~~~~---d--~~~~i-k~i~-----------nP~~l~~~~~---~~~~~PSTG~l~l~lALhl-CDeV~lYGF~~d~~  316 (475)
                      . ....   .  +.... ....           .+.+....+.   ....++|||..|+.+|+.| +++|-+.|+...  
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~g~~alqiA~~LGfKeIYLlG~D~y--  156 (258)
T d1ro7a_          79 SNYNQAHLENENFVKTFYDYFPDAHLGYDFFKQLKDFNAYFKFHEIYFNQRITSGVYMCAVAIALGYKEIYLSGIDFY--  156 (258)
T ss_dssp             CCCSCTTTSCHHHHHTHHHHSTTCEETHHHHTTSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTCCEEEEESCCTT--
T ss_pred             ccccccchhhhhhhhhhhccccccccceEcccccCCcccceeeccccccCCCCHHHHHHHHHHHcCCCEEEEEeeccC--
Confidence            1 1110   1  01100 0111           1111110000   1134679999999999986 999999999421  


Q ss_pred             CCccccccCCCC-----------------CCCCchhHHHHHHHHHhcCcEEEE
Q 011883          317 YTEWTRYFSTPR-----------------KGHNPLQGRAYYQLLECLGVIRIH  352 (475)
Q Consensus       317 y~~~~HYyd~~~-----------------~~Hd~~~E~~l~~~Lh~~GvI~Lh  352 (475)
                      .....|+||...                 ..|++.....-+.-|.+.+=+.|+
T Consensus       157 ~~~~~~~ye~~~~n~~~l~~~~~~~~~~~~~h~~~~d~~~l~~l~~~~~~~~~  209 (258)
T d1ro7a_         157 QNGSSYAFDTKQKNLLKLAPNFKNDNSHYIGHSKNTDIKALEFLEKTYKIKLY  209 (258)
T ss_dssp             TTSSCCSSCCCCHHHHHHCGGGGSSCCCCTTCCHHHHHHHHHHHHHHHTCEEE
T ss_pred             CCCCCccccCcccchhhhCcchhhccCcccchhHHHHHHHHHHHHHhcCeeEE
Confidence            122348887531                 347776666666777776666664

PyMOL of d1ro7a_