Citrus Sinensis ID: 011888

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQAV
cHHHHHHHHHcccccEEcccEEEEEEEcccEEEEEEccccEEEccEEEEcccccHHHHcccccccccEEccEEEEEEEEccccccccccEEEEEEccccEEEEEEccccEEEEEEEEEccccccccccccHHHHHHHHccccHHHHHHHHccccccEEEEcccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccHHHcccccHHHHHHHcccccccccccccccccccccHHHHHcccccHHHHHHccccEEEEEccccccccccEEEccccccccEEEcccccccccccEEEEEccccccccEEEEEcccEEEEEEcccccccEEEcccccEEccccccccccccccEEEEcccccEEEEEEEEcccccccccccccccccccc
cHHHHHHHHHcccccEEcccEEEEEEEcccEEEEEEccccEEEEEEEEEcccHHHHHHHHHcccccccEcEEEEEEEEEcccccccccccEEEEEccccEEEEEEccccEEEEEEEEcccccccccccccHHHHHHHHccccHHHHHHHHHccHHHHHHccHcccccccccccccEEEEccccccccccHcHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcHHHHHHHHcccEEEEEccccccccccEEEEEccccccEEEEccccccccccEEEEccccccHccEEEEEccccEEEEEccccccEEEEcccccEEEccccccEEEccccEEEEccccEEEEEEEEEEccccccHHccccccEEEcc
MTLQQILAKAVGdeiilnesnvidfkdhgdKVSVVLENgqcyagdlligadgIWSKVrknlfgpqeaiysgytcytgiadfvpadiesvgYRVFLGHKqyfvssdvgagkmQWYAfhkepaggvdgpegkKERLLKIFEGWCDNVVDLILATDEEAILRrdiydrtpiftwgrgrvtllgdsvhamqpnlgqggcmaiEDGYQLAVELEKACkksnesktpIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLgvglgplsfltkfriphpgrvggrFFIDLAMPLMLSWVlggnssklegrspccklsdkaSDNLRTWFRDDDALEramngewflvpsgsenvvsqpiylsvshenepyligseshedfsrtsivipsaqvsKMHARISYKDGAFYLIDLqsehgtyvtdnegrryrvssnfparfrpsdtiefgsdkkaIFRVKVigtppnnnserKEAGEILQAV
MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKepaggvdgpeGKKERLLKIFEGWCDNVVDLILATdeeailrrdiydrtpiftwGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACkksnesktpidiVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGseshedfsrTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGtyvtdnegrryrvssnfparfrpsdtiefgsdkkaifrvkvigtppnnnserkeageilqav
MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQAV
*****ILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGG*******KERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACK*******PIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNS*******PCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIG******FSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVS**F********TIEFGSDKKAIFRVKVI********************
MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSP*************TWFRDDDALERAMNGEWFLVPSGSEN**SQPI*LSVSHENEP***************IVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVK**********************
MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQAV
MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNN*************
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAVIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQAV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query475 2.2.26 [Sep-21-2011]
O81360661 Zeaxanthin epoxidase, chl N/A no 0.985 0.708 0.763 0.0
Q40412663 Zeaxanthin epoxidase, chl N/A no 0.985 0.705 0.738 0.0
Q9FGC7667 Zeaxanthin epoxidase, chl yes no 0.995 0.709 0.726 0.0
P93236669 Zeaxanthin epoxidase, chl N/A no 0.991 0.704 0.738 0.0
Q0JCU7659 Zeaxanthin epoxidase, chl yes no 0.989 0.713 0.707 0.0
Q96375660 Zeaxanthin epoxidase, chl N/A no 0.972 0.7 0.702 0.0
Q9F131394 3-hydroxybenzoate 6-hydro N/A no 0.465 0.560 0.307 9e-22
A6T923384 FAD-dependent urate hydro yes no 0.475 0.588 0.322 5e-21
B6D1N4384 FAD-dependent urate hydro yes no 0.475 0.588 0.322 2e-20
B5B0J6384 FAD-dependent urate hydro yes no 0.482 0.596 0.308 5e-20
>sp|O81360|ABA2_PRUAR Zeaxanthin epoxidase, chloroplastic OS=Prunus armeniaca PE=2 SV=1 Back     alignment and function desciption
 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/474 (76%), Positives = 409/474 (86%), Gaps = 6/474 (1%)

Query: 1   MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKN 60
           + LQQILA+AVG+EII+N+SNV++F+D GDKV+V+LENGQ Y GD+L+GADGIWSKVRKN
Sbjct: 193 IALQQILARAVGEEIIINDSNVVNFEDLGDKVNVILENGQRYEGDMLVGADGIWSKVRKN 252

Query: 61  LFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 120
           LFG  EA+YSGYTCYTGIADFVPADI SVGYRVFLGHKQYFVSSDVG GKMQWYAFHKE 
Sbjct: 253 LFGLNEAVYSGYTCYTGIADFVPADINSVGYRVFLGHKQYFVSSDVGGGKMQWYAFHKES 312

Query: 121 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLG 180
            GGVD P GKKERLLKIFEGWCDNV+DL+LAT+E+AILRRDIYDRTPI TWG+G VTLLG
Sbjct: 313 PGGVDSPNGKKERLLKIFEGWCDNVIDLLLATEEDAILRRDIYDRTPILTWGKGHVTLLG 372

Query: 181 DSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 240
           DSVHAMQPN+GQGGCMAIEDGYQLA+EL+KA KKS+E+ TP+D+ S+L+SYE +RRLRVA
Sbjct: 373 DSVHAMQPNMGQGGCMAIEDGYQLALELDKAWKKSSETGTPVDVASSLRSYENSRRLRVA 432

Query: 241 VIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLG 300
           +IHG+AR AA+MASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGR FID AMPLMLSWVLG
Sbjct: 433 IIHGMARMAALMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRVFIDKAMPLMLSWVLG 492

Query: 301 GNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSV 360
           GNSSKLEGRSP C+LSDKASD LR WF DDDALERA++GEW+L+P G +N  SQ I L+ 
Sbjct: 493 GNSSKLEGRSPSCRLSDKASDQLRNWFEDDDALERAIDGEWYLIPCGQDNDASQLICLNR 552

Query: 361 SHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNE 420
             +N P +IGS  H D S  SI IP  QVS+MHARISYKDGAFYL DL+SEHGT++ D E
Sbjct: 553 DEKN-PCIIGSAPHGDVSGISIAIPKPQVSEMHARISYKDGAFYLTDLRSEHGTWIADIE 611

Query: 421 GRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQA 474
           G+RYRV  NFPARFRPSD IE GS K A FRVKV+ + P   S  KE   ILQA
Sbjct: 612 GKRYRVPPNFPARFRPSDAIEIGSQKVA-FRVKVMKSSP--GSVEKEG--ILQA 660
Converts zeaxanthin into antheraxanthin and subsequently violaxanthin. Involved in the epoxidation of zeaxanthin.
Prunus armeniaca (taxid: 36596)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 3EC: .EC: 9EC: 0
>sp|Q40412|ABA2_NICPL Zeaxanthin epoxidase, chloroplastic OS=Nicotiana plumbaginifolia GN=ABA2 PE=1 SV=1 Back     alignment and function description
>sp|Q9FGC7|ZEP_ARATH Zeaxanthin epoxidase, chloroplastic OS=Arabidopsis thaliana GN=ZEP PE=1 SV=1 Back     alignment and function description
>sp|P93236|ABA2_SOLLC Zeaxanthin epoxidase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 Back     alignment and function description
>sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=ZEP PE=2 SV=1 Back     alignment and function description
>sp|Q96375|ABA2_CAPAN Zeaxanthin epoxidase, chloroplastic OS=Capsicum annuum PE=2 SV=1 Back     alignment and function description
>sp|Q9F131|3HBH1_PSEAC 3-hydroxybenzoate 6-hydroxylase 1 OS=Pseudomonas alcaligenes GN=xlnD PE=1 SV=1 Back     alignment and function description
>sp|A6T923|HPXO_KLEP7 FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=hpxO PE=1 SV=1 Back     alignment and function description
>sp|B6D1N4|HPXO_KLEPN FAD-dependent urate hydroxylase OS=Klebsiella pneumoniae GN=hpxO PE=3 SV=1 Back     alignment and function description
>sp|B5B0J6|HPXO_KLEOX FAD-dependent urate hydroxylase OS=Klebsiella oxytoca GN=hpxO PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
290361322 664 zeaxanthin epoxidase [Citrus unshiu] 1.0 0.715 0.995 0.0
290361326 664 zeaxanthin epoxidase [Citrus sinensis] 1.0 0.715 0.991 0.0
17402597 664 zeaxanthin epoxidase [Citrus unshiu] 1.0 0.715 0.993 0.0
190576749 664 zeaxanthin epoxidase [Citrus maxima] 1.0 0.715 0.972 0.0
290361328 664 zeaxanthin epoxidase [Citrus sinensis] 1.0 0.715 0.972 0.0
290361324 664 zeaxanthin epoxidase [Citrus unshiu] 1.0 0.715 0.972 0.0
225438718 658 PREDICTED: zeaxanthin epoxidase, chlorop 0.989 0.714 0.789 0.0
38112202 658 zeaxanthin epoxidase [Vitis vinifera] 0.989 0.714 0.789 0.0
399158079 658 zeaxanthin epoxidase 1 [Vitis vinifera] 0.989 0.714 0.787 0.0
224084342 692 predicted protein [Populus trichocarpa] 0.995 0.683 0.732 0.0
>gi|290361322|dbj|BAI79257.1| zeaxanthin epoxidase [Citrus unshiu] Back     alignment and taxonomy information
 Score =  981 bits (2537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/475 (99%), Positives = 473/475 (99%)

Query: 1   MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKN 60
           MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKN
Sbjct: 190 MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKN 249

Query: 61  LFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 120
           LFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP
Sbjct: 250 LFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 309

Query: 121 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLG 180
           AGGVD PEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLG
Sbjct: 310 AGGVDDPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLG 369

Query: 181 DSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 240
           DSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA
Sbjct: 370 DSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 429

Query: 241 VIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLG 300
           VIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLG
Sbjct: 430 VIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLG 489

Query: 301 GNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSV 360
           GNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSV
Sbjct: 490 GNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSV 549

Query: 361 SHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNE 420
           SHENEPYLIGSESHEDF RTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNE
Sbjct: 550 SHENEPYLIGSESHEDFPRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNE 609

Query: 421 GRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQAV 475
           GRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQAV
Sbjct: 610 GRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEAGEILQAV 664

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|290361326|dbj|BAI79259.1| zeaxanthin epoxidase [Citrus sinensis] Back     alignment and taxonomy information
>gi|17402597|dbj|BAB78733.1| zeaxanthin epoxidase [Citrus unshiu] Back     alignment and taxonomy information
>gi|190576749|gb|ACE79170.1| zeaxanthin epoxidase [Citrus maxima] Back     alignment and taxonomy information
>gi|290361328|dbj|BAI79260.1| zeaxanthin epoxidase [Citrus sinensis] Back     alignment and taxonomy information
>gi|290361324|dbj|BAI79258.1| zeaxanthin epoxidase [Citrus unshiu] Back     alignment and taxonomy information
>gi|225438718|ref|XP_002282543.1| PREDICTED: zeaxanthin epoxidase, chloroplastic [Vitis vinifera] gi|296082420|emb|CBI21425.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|38112202|gb|AAR11195.1| zeaxanthin epoxidase [Vitis vinifera] Back     alignment and taxonomy information
>gi|399158079|gb|AFP28801.1| zeaxanthin epoxidase 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224084342|ref|XP_002307265.1| predicted protein [Populus trichocarpa] gi|222856714|gb|EEE94261.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
TAIR|locus:2158083667 ABA1 "ABA DEFICIENT 1" [Arabid 0.993 0.707 0.727 4.4e-194
UNIPROTKB|Q0JCU7659 ZEP "Zeaxanthin epoxidase, chl 0.987 0.711 0.708 4.3e-180
UNIPROTKB|A6T923384 hpxO "FAD-dependent urate hydr 0.492 0.609 0.317 5.7e-20
UNIPROTKB|B5B0J6384 hpxO "FAD-dependent urate hydr 0.498 0.617 0.304 2.4e-19
UNIPROTKB|B6D1N4384 hpxO "FAD-dependent urate hydr 0.492 0.609 0.317 2.4e-19
UNIPROTKB|Q88FY2382 nicC "6-hydroxynicotinate 3-mo 0.444 0.552 0.308 1.2e-17
UNIPROTKB|P86491385 P86491 "6-hydroxynicotinate 3- 0.435 0.537 0.297 1.5e-16
TAIR|locus:2060584427 CTF2B "AT2G29720" [Arabidopsis 0.471 0.524 0.308 2.4e-15
TIGR_CMR|SPO_3692395 SPO_3692 "monooxygenase, putat 0.44 0.529 0.293 5.3e-15
TAIR|locus:2058723439 CTF2A "AT2G35660" [Arabidopsis 0.463 0.501 0.307 4.7e-14
TAIR|locus:2158083 ABA1 "ABA DEFICIENT 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1880 (666.9 bits), Expect = 4.4e-194, P = 4.4e-194
 Identities = 345/474 (72%), Positives = 405/474 (85%)

Query:     1 MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKN 60
             MTLQQILA+AVG+++I NESNV+DF+D GDKV+VVLENGQ Y GDLL+GADGIWSKVR N
Sbjct:   193 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNN 252

Query:    61 LFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 120
             LFG  EA YSGYTCYTGIADF+PADIESVGYRVFLGHKQYFVSSDVG GKMQWYAFH+EP
Sbjct:   253 LFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEP 312

Query:   121 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLG 180
             AGG D P G K+RL +IF+GWCDNV+DL+ AT+EEAILRRDIYDR+P FTWG+GRVTLLG
Sbjct:   313 AGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEEAILRRDIYDRSPGFTWGKGRVTLLG 372

Query:   181 DSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 240
             DS+HAMQPN+GQGGCMAIED +QLA+EL++A K+S E+ TP+D+VS+LK YE +RRLRVA
Sbjct:   373 DSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETTTPVDVVSSLKRYEESRRLRVA 432

Query:   241 VIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLG 300
             +IH +AR AA+MASTYKAYLGVGLGPLSFLTKFR+PHPGRVGGRFF+D+AMP ML WVLG
Sbjct:   433 IIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVGGRFFVDIAMPSMLDWVLG 492

Query:   301 GNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSV 360
             GNS KL+GR P C+L+DKA D LR WF DDDALER + GEW+L+P G +  VS+ + L+ 
Sbjct:   493 GNSEKLQGRPPSCRLTDKADDRLREWFEDDDALERTIKGEWYLIPHGDDCCVSETLCLT- 551

Query:   361 SHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNE 420
               E++P ++GSE  +DF    IVIPS+QVSKMHAR+ YKDGAF+L+DL+SEHGTYVTDNE
Sbjct:   552 KDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDNE 611

Query:   421 GRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIG-TPPNNNSERKEAGEILQ 473
             GRRYR + NFPARFR SD IEFGSDKKA FRVKVI  TP +         ++LQ
Sbjct:   612 GRRYRATPNFPARFRSSDIIEFGSDKKAAFRVKVIRKTPKSTRKNESNNDKLLQ 665
GO:0008152 "metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IEA;IDA
GO:0009540 "zeaxanthin epoxidase [overall
GO:0009688 "abscisic acid biosynthetic process" evidence=IEA;TAS
GO:0016020 "membrane" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0006970 "response to osmotic stress" evidence=IMP
GO:0009414 "response to water deprivation" evidence=IMP
GO:0010182 "sugar mediated signaling pathway" evidence=TAS
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009408 "response to heat" evidence=IMP
GO:0010114 "response to red light" evidence=IEP
GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA
GO:0016123 "xanthophyll biosynthetic process" evidence=IMP
UNIPROTKB|Q0JCU7 ZEP "Zeaxanthin epoxidase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A6T923 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae subsp. pneumoniae MGH 78578 (taxid:272620)] Back     alignment and assigned GO terms
UNIPROTKB|B5B0J6 hpxO "FAD-dependent urate hydroxylase" [Klebsiella oxytoca (taxid:571)] Back     alignment and assigned GO terms
UNIPROTKB|B6D1N4 hpxO "FAD-dependent urate hydroxylase" [Klebsiella pneumoniae (taxid:573)] Back     alignment and assigned GO terms
UNIPROTKB|Q88FY2 nicC "6-hydroxynicotinate 3-monooxygenase" [Pseudomonas putida KT2440 (taxid:160488)] Back     alignment and assigned GO terms
UNIPROTKB|P86491 P86491 "6-hydroxynicotinate 3-monooxygenase" [Pseudomonas fluorescens (taxid:294)] Back     alignment and assigned GO terms
TAIR|locus:2060584 CTF2B "AT2G29720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3692 SPO_3692 "monooxygenase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TAIR|locus:2058723 CTF2A "AT2G35660" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O81360ABA2_PRUAR1, ., 1, 4, ., 1, 3, ., 9, 00.76370.98520.7080N/Ano
Q0JCU7ZEP_ORYSJ1, ., 1, 4, ., 1, 3, ., 9, 00.70730.98940.7132yesno
Q96375ABA2_CAPAN1, ., 1, 4, ., 1, 3, ., 9, 00.70250.97260.7N/Ano
Q40412ABA2_NICPL1, ., 1, 4, ., 1, 3, ., 9, 00.73880.98520.7058N/Ano
P93236ABA2_SOLLC1, ., 1, 4, ., 1, 3, ., 9, 00.73830.99150.7040N/Ano
Q9FGC7ZEP_ARATH1, ., 1, 4, ., 1, 3, ., 9, 00.72630.99570.7091yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.130.963
3rd Layer1.14.13.900.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
ZEP
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (658 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00037718001
SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (306 aa)
     •• 0.925
GSVIVG00007662001
SubName- Full=Chromosome undetermined scaffold_197, whole genome shotgun sequence; (479 aa)
     •• 0.925
bch1
SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (299 aa)
     •• 0.925
GSVIVG00037315001
SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (497 aa)
     •• 0.908
PDS1
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (582 aa)
      • 0.483
FLC
SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (68 aa)
      • 0.481
GPPS
SubName- Full=Chromosome chr6 scaffold_28, whole genome shotgun sequence; (422 aa)
      • 0.480

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
PLN02927668 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxa 0.0
PRK06753373 PRK06753, PRK06753, hypothetical protein; Provisio 2e-32
PRK08163396 PRK08163, PRK08163, salicylate hydroxylase; Provis 9e-31
COG0654387 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox 2e-26
PRK06847375 PRK06847, PRK06847, hypothetical protein; Provisio 5e-25
PRK07538413 PRK07538, PRK07538, hypothetical protein; Provisio 6e-23
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 7e-18
TIGR03219414 TIGR03219, salicylate_mono, salicylate 1-monooxyge 2e-16
PRK06475400 PRK06475, PRK06475, salicylate hydroxylase; Provis 5e-16
pfam0049867 pfam00498, FHA, FHA domain 2e-14
PRK07588391 PRK07588, PRK07588, hypothetical protein; Provisio 8e-12
smart0024052 smart00240, FHA, Forkhead associated domain 7e-09
COG1716191 COG1716, COG1716, FOG: FHA domain [Signal transduc 1e-08
pfam01494349 pfam01494, FAD_binding_3, FAD binding domain 2e-07
PRK07236386 PRK07236, PRK07236, hypothetical protein; Provisio 2e-06
PRK07045388 PRK07045, PRK07045, putative monooxygenase; Review 3e-05
PRK08255 765 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; R 3e-05
TIGR01988387 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd 1e-04
PRK05868372 PRK05868, PRK05868, hypothetical protein; Validate 2e-04
TIGR03354 396 TIGR03354, VI_FHA, type VI secretion system FHA do 3e-04
TIGR01988387 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd 4e-04
COG3456 430 COG3456, COG3456, Predicted component of the type 4e-04
PRK06183500 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydr 5e-04
PRK07333403 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl h 0.001
PRK06185407 PRK06185, PRK06185, hypothetical protein; Provisio 0.002
TIGR01984382 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hy 0.002
PRK05868372 PRK05868, PRK05868, hypothetical protein; Validate 0.004
>gnl|CDD|178515 PLN02927, PLN02927, antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information 
 Score =  747 bits (1930), Expect = 0.0
 Identities = 346/474 (72%), Positives = 406/474 (85%), Gaps = 2/474 (0%)

Query: 1   MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKN 60
           MTLQQILA+AVG+++I NESNV+DF+D GDKV+VVLENGQ Y GDLL+GADGIWSKVR N
Sbjct: 194 MTLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNN 253

Query: 61  LFGPQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 120
           LFG  EA YSGYTCYTGIADF+PADIESVGYRVFLGHKQYFVSSDVG GKMQWYAFH+EP
Sbjct: 254 LFGRSEATYSGYTCYTGIADFIPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEP 313

Query: 121 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLG 180
           AGG D P G K+RL +IF+GWCDNV+DL+ AT+E+AILRRDIYDR+P FTWG+GRVTLLG
Sbjct: 314 AGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLG 373

Query: 181 DSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA 240
           DS+HAMQPN+GQGGCMAIED +QLA+EL++A K+S E+ TP+D+VS+LK YE +RRLRVA
Sbjct: 374 DSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVA 433

Query: 241 VIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLG 300
           +IH +AR AA+MASTYKAYLGVGLGPLSFLTKFR+PHPGRVGGRFF+D+AMPLML WVLG
Sbjct: 434 IIHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVGGRFFVDIAMPLMLDWVLG 493

Query: 301 GNSSKLEGRSPCCKLSDKASDNLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSV 360
           GNS KLEGR P C+L+DKA D LR WF DDDALER + GEW+L+P G +  VS+ + L+ 
Sbjct: 494 GNSEKLEGRPPSCRLTDKADDRLREWFEDDDALERTIKGEWYLIPHGDDCCVSETLCLT- 552

Query: 361 SHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNE 420
             E++P ++GSE  +DF    IVIPS+QVSKMHAR+ YKDGAF+L+DL+SEHGTYVTDNE
Sbjct: 553 KDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDGAFFLMDLRSEHGTYVTDNE 612

Query: 421 GRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVI-GTPPNNNSERKEAGEILQ 473
           GRRYR + NFPARFR SD IEFGSDKKA FRVKVI  TP +         ++LQ
Sbjct: 613 GRRYRATPNFPARFRSSDIIEFGSDKKAAFRVKVIRKTPKSTRKNESNNDKLLQ 666

Length = 668
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information
>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase Back     alignment and domain information
>gnl|CDD|180582 PRK06475, PRK06475, salicylate hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|169028 PRK07588, PRK07588, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|224630 COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain Back     alignment and domain information
>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed Back     alignment and domain information
>gnl|CDD|236203 PRK08255, PRK08255, salicylyl-CoA 5-hydroxylase; Reviewed Back     alignment and domain information
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein Back     alignment and domain information
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Back     alignment and domain information
>gnl|CDD|180935 PRK07333, PRK07333, 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>gnl|CDD|235729 PRK06185, PRK06185, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>gnl|CDD|180297 PRK05868, PRK05868, hypothetical protein; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 475
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 100.0
PRK06753373 hypothetical protein; Provisional 100.0
TIGR03219414 salicylate_mono salicylate 1-monooxygenase. Member 100.0
PRK06617374 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 100.0
PRK06475400 salicylate hydroxylase; Provisional 100.0
PRK07588391 hypothetical protein; Provisional 100.0
PRK07236386 hypothetical protein; Provisional 100.0
PRK08013400 oxidoreductase; Provisional 100.0
PRK08849384 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.98
PRK05868372 hypothetical protein; Validated 99.97
PRK05714405 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.97
COG0654387 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and 99.97
PRK08850405 2-octaprenyl-6-methoxyphenol hydroxylase; Validate 99.97
TIGR01989437 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T 99.97
PRK07538413 hypothetical protein; Provisional 99.97
PRK07045388 putative monooxygenase; Reviewed 99.97
PRK06183538 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va 99.97
PRK08163396 salicylate hydroxylase; Provisional 99.97
PRK08773392 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy 99.97
PRK08020391 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin 99.97
PRK06996398 hypothetical protein; Provisional 99.97
PRK07494388 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 99.97
PRK06847375 hypothetical protein; Provisional 99.97
PRK06185407 hypothetical protein; Provisional 99.97
PRK06834488 hypothetical protein; Provisional 99.96
PRK07364415 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.96
PRK07333403 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio 99.96
PRK08294634 phenol 2-monooxygenase; Provisional 99.96
KOG2614420 consensus Kynurenine 3-monooxygenase and related f 99.96
PRK09126392 hypothetical protein; Provisional 99.96
TIGR02360390 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. 99.96
PRK08244493 hypothetical protein; Provisional 99.96
PRK08243392 4-hydroxybenzoate 3-monooxygenase; Validated 99.96
PRK06184502 hypothetical protein; Provisional 99.95
TIGR01984382 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T 99.95
PRK08132547 FAD-dependent oxidoreductase; Provisional 99.95
PRK07190487 hypothetical protein; Provisional 99.95
PRK07608388 ubiquinone biosynthesis hydroxylase family protein 99.95
TIGR01988385 Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub 99.95
PRK06126545 hypothetical protein; Provisional 99.95
PRK05732395 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate 99.95
PF01494356 FAD_binding_3: FAD binding domain; InterPro: IPR00 99.95
PTZ00367567 squalene epoxidase; Provisional 99.93
PLN02985514 squalene monooxygenase 99.93
PRK08255 765 salicylyl-CoA 5-hydroxylase; Reviewed 99.87
KOG3855481 consensus Monooxygenase involved in coenzyme Q (ub 99.84
TIGR02032295 GG-red-SF geranylgeranyl reductase family. This mo 99.82
TIGR02023388 BchP-ChlP geranylgeranyl reductase. This model rep 99.81
PLN00093450 geranylgeranyl diphosphate reductase; Provisional 99.79
PF08491276 SE: Squalene epoxidase; InterPro: IPR013698 This d 99.78
PRK11445351 putative oxidoreductase; Provisional 99.77
TIGR02028398 ChlP geranylgeranyl reductase. This model represen 99.76
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.73
TIGR01790388 carotene-cycl lycopene cyclase family protein. Thi 99.67
COG0644396 FixC Dehydrogenases (flavoproteins) [Energy produc 99.64
PRK10015429 oxidoreductase; Provisional 99.58
PRK10157428 putative oxidoreductase FixC; Provisional 99.57
TIGR01789370 lycopene_cycl lycopene cyclase. This model represe 99.57
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.48
TIGR03354 396 VI_FHA type VI secretion system FHA domain protein 99.44
PLN02697529 lycopene epsilon cyclase 99.39
KOG1298509 consensus Squalene monooxygenase [Lipid transport 99.35
PLN02463447 lycopene beta cyclase 99.34
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 99.29
KOG1882293 consensus Transcriptional regulator SNIP1, contain 99.24
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 99.17
PF04820454 Trp_halogenase: Tryptophan halogenase; InterPro: I 99.12
COG3456 430 Predicted component of the type VI protein secreti 99.11
KOG1881 793 consensus Anion exchanger adaptor protein Kanadapt 98.84
PF05834374 Lycopene_cycl: Lycopene cyclase protein; InterPro: 98.83
KOG1880 337 consensus Nuclear inhibitor of phosphatase-1 [Gene 98.5
KOG0615 475 consensus Serine/threonine protein kinase Chk2 and 97.53
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 97.16
TIGR02500 410 type_III_yscD type III secretion apparatus protein 97.16
KOG2293547 consensus Daxx-interacting protein MSP58/p78, cont 96.93
PRK12416463 protoporphyrinogen oxidase; Provisional 96.76
TIGR00562462 proto_IX_ox protoporphyrinogen oxidase. This prote 96.6
TIGR02352337 thiamin_ThiO glycine oxidase ThiO. This family con 96.57
PRK12409410 D-amino acid dehydrogenase small subunit; Provisio 96.48
KOG1892 1629 consensus Actin filament-binding protein Afadin [C 96.4
PRK01747662 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans 96.04
TIGR01377380 soxA_mon sarcosine oxidase, monomeric form. Sarcos 96.04
TIGR01663 526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 96.03
TIGR03197381 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri 95.63
PRK11883451 protoporphyrinogen oxidase; Reviewed 95.6
PF01266358 DAO: FAD dependent oxidoreductase; InterPro: IPR00 95.45
PRK11259376 solA N-methyltryptophan oxidase; Provisional 95.32
TIGR02730493 carot_isom carotene isomerase. Members of this fam 95.28
TIGR01373407 soxB sarcosine oxidase, beta subunit family, heter 95.19
TIGR02734502 crtI_fam phytoene desaturase. Phytoene is converte 94.95
PRK00711416 D-amino acid dehydrogenase small subunit; Validate 94.82
PLN02612567 phytoene desaturase 94.09
PLN02568539 polyamine oxidase 93.85
PRK07233434 hypothetical protein; Provisional 93.17
TIGR03467419 HpnE squalene-associated FAD-dependent desaturase. 92.97
PRK11728393 hydroxyglutarate oxidase; Provisional 92.75
PRK13369502 glycerol-3-phosphate dehydrogenase; Provisional 92.44
TIGR02733492 desat_CrtD C-3',4' desaturase CrtD. Members of thi 92.33
PF13738203 Pyr_redox_3: Pyridine nucleotide-disulphide oxidor 91.99
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 91.94
PLN02676487 polyamine oxidase 91.74
PLN02576496 protoporphyrinogen oxidase 91.54
COG2081408 Predicted flavoproteins [General function predicti 90.68
PRK04176257 ribulose-1,5-biphosphate synthetase; Provisional 90.47
PRK12266508 glpD glycerol-3-phosphate dehydrogenase; Reviewed 89.84
PRK04965377 NADH:flavorubredoxin oxidoreductase; Provisional 89.48
PF01593450 Amino_oxidase: Flavin containing amine oxidoreduct 89.03
TIGR00275400 flavoprotein, HI0933 family. The model when search 88.81
PF13454156 NAD_binding_9: FAD-NAD(P)-binding 87.98
COG1231450 Monoamine oxidase [Amino acid transport and metabo 87.77
PRK05249461 soluble pyridine nucleotide transhydrogenase; Prov 87.7
TIGR00292254 thiazole biosynthesis enzyme. This enzyme is invol 87.59
PRK05257494 malate:quinone oxidoreductase; Validated 86.85
PRK15317517 alkyl hydroperoxide reductase subunit F; Provision 86.15
COG0579429 Predicted dehydrogenase [General function predicti 85.7
PF03486409 HI0933_like: HI0933-like protein; InterPro: IPR004 85.53
PLN02268435 probable polyamine oxidase 85.51
TIGR02732474 zeta_caro_desat carotene 7,8-desaturase. Carotene 83.81
PF0007080 Pyr_redox: Pyridine nucleotide-disulphide oxidored 83.72
PRK06116450 glutathione reductase; Validated 83.18
PLN02464627 glycerol-3-phosphate dehydrogenase 81.39
PRK07846451 mycothione reductase; Reviewed 81.35
PRK09231582 fumarate reductase flavoprotein subunit; Validated 80.86
PTZ00383497 malate:quinone oxidoreductase; Provisional 80.63
PRK09754396 phenylpropionate dioxygenase ferredoxin reductase 80.42
TIGR01292300 TRX_reduct thioredoxin-disulfide reductase. This m 80.19
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-76  Score=615.50  Aligned_cols=472  Identities=73%  Similarity=1.268  Sum_probs=418.8

Q ss_pred             hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCCCCCcccceEEEEEEecc
Q 011888            2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGPQEAIYSGYTCYTGIADF   81 (475)
Q Consensus         2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~   81 (475)
                      +|+++|.++++...++++++|++++.++++|+|++++|+++++|+||||||++|.+|+.+++...+.|.++.+|+++++.
T Consensus       195 ~L~~~L~~alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~  274 (668)
T PLN02927        195 TLQQILARAVGEDVIRNESNVVDFEDSGDKVTVVLENGQRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADF  274 (668)
T ss_pred             HHHHHHHhhCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEEEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCC
Confidence            68899999887777899999999999999999999999999999999999999999999987777889999999988876


Q ss_pred             CCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCccceeecc
Q 011888           82 VPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRD  161 (475)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (475)
                      .+.......+..|.++..+++.++..++.+.|+.+...+....+.++...+++++.|..|++.+.+++...+...+..+.
T Consensus       275 ~p~~~~~~~~~~~~G~~~~~v~~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~  354 (668)
T PLN02927        275 IPADIESVGYRVFLGHKQYFVSSDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRD  354 (668)
T ss_pred             CcccccccceEEEEcCCeEEEEEcCCCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeee
Confidence            55443444456677888888888888887888777655433223345677889999999999999988876655566778


Q ss_pred             cccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhHHHHH
Q 011888          162 IYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVAV  241 (475)
Q Consensus       162 ~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~  241 (475)
                      ++.+.+..+|++|||+|+|||||+|+|+.|||+|+||+||..|+++|..+++.....+.+.+++.+|+.|+++|++++..
T Consensus       355 iyd~~p~~~W~~grVvLiGDAAH~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~  434 (668)
T PLN02927        355 IYDRSPGFTWGKGRVTLLGDSIHAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAI  434 (668)
T ss_pred             EEeccCCCccccCcEEEEcCccCCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence            88877778999999999999999999999999999999999999999887653222223456889999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCCCCccceeEEecchhhhHHhhhcCCCCCCCCCCCceeCCcccch
Q 011888          242 IHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHPGRVGGRFFIDLAMPLMLSWVLGGNSSKLEGRSPCCKLSDKASD  321 (475)
Q Consensus       242 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (475)
                      ++..+++...+...+..+.+.++.|+.+++.++++.+.+...|+++..+||+|++|+.+.+.+.++|++..|.+.|++++
T Consensus       435 i~~~ar~a~~~~~~~~~y~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  514 (668)
T PLN02927        435 IHAMARMAAIMASTYKAYLGVGLGPLSFLTKFRVPHPGRVGGRFFVDIAMPLMLDWVLGGNSEKLEGRPPSCRLTDKADD  514 (668)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcCCCCCCceeeeeeeecccHHHhhhhhcCCccccCCCCCccccccchhH
Confidence            99999999999988877767889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhccCchHHhhhcCCcEEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECC
Q 011888          322 NLRTWFRDDDALERAMNGEWFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDG  401 (475)
Q Consensus       322 ~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~  401 (475)
                      .+.+||++||++||+.++.|+|+|.++.+...++++|. +.++.+++|||.++++.+...|+|+++.||+.||+|.++++
T Consensus       515 ~~~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~l~-~~~~~p~~iG~~~~~~~~~~~i~i~~~~vS~~Ha~i~~~~~  593 (668)
T PLN02927        515 RLREWFEDDDALERTIKGEWYLIPHGDDCCVSETLCLT-KDEDQPCIVGSEPDQDFPGMRIVIPSSQVSKMHARVIYKDG  593 (668)
T ss_pred             HHHHHhcccHHHHHhhcCCeEEEecCCCCcccceeeee-cCCCCCeEecCCCCcCCCCceEEecCCccChhHeEEEEECC
Confidence            99999999999999999999999999998888999998 88899999999999997777789999999999999999999


Q ss_pred             eEEEEEcCCccceeeccCCCceeecCCCCcEEeCCCCEEEeCCCceEEEEEEEeccCCCCCcccccc--ccccccC
Q 011888          402 AFYLIDLQSEHGTYVTDNEGRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKVIGTPPNNNSERKEA--GEILQAV  475 (475)
Q Consensus       402 ~~~i~D~~S~nGt~vn~~~~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  475 (475)
                      .|||+||+|+|||||||.+|+++++.|+.+..|++||+|+||+.+...|++++..++|+.. +++|.  .++|++|
T Consensus       594 ~~~~~Dl~S~nGT~v~~~~~~r~~~~p~~~~~l~~~d~I~~g~~~~~~fr~~~~~~~~~~~-~~~~~~~~~~~~~~  668 (668)
T PLN02927        594 AFFLMDLRSEHGTYVTDNEGRRYRATPNFPARFRSSDIIEFGSDKKAAFRVKVIRKTPKST-RKNESNNDKLLQTA  668 (668)
T ss_pred             EEEEEECCCCCccEEeCCCCceEecCCCCceEeCCCCEEEeCCCcceeEEEEeecCCCcch-hhcccchhhhhhcC
Confidence            9999999999999999999999999999999999999999999888899999999999887 55554  5899876

>PRK06753 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03219 salicylate_mono salicylate 1-monooxygenase Back     alignment and domain information
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK06475 salicylate hydroxylase; Provisional Back     alignment and domain information
>PRK07588 hypothetical protein; Provisional Back     alignment and domain information
>PRK07236 hypothetical protein; Provisional Back     alignment and domain information
>PRK08013 oxidoreductase; Provisional Back     alignment and domain information
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>PRK05868 hypothetical protein; Validated Back     alignment and domain information
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Back     alignment and domain information
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Back     alignment and domain information
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Back     alignment and domain information
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 Back     alignment and domain information
>PRK07538 hypothetical protein; Provisional Back     alignment and domain information
>PRK07045 putative monooxygenase; Reviewed Back     alignment and domain information
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated Back     alignment and domain information
>PRK08163 salicylate hydroxylase; Provisional Back     alignment and domain information
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Back     alignment and domain information
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Back     alignment and domain information
>PRK06996 hypothetical protein; Provisional Back     alignment and domain information
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>PRK06847 hypothetical protein; Provisional Back     alignment and domain information
>PRK06185 hypothetical protein; Provisional Back     alignment and domain information
>PRK06834 hypothetical protein; Provisional Back     alignment and domain information
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Back     alignment and domain information
>PRK08294 phenol 2-monooxygenase; Provisional Back     alignment and domain information
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] Back     alignment and domain information
>PRK09126 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase Back     alignment and domain information
>PRK08244 hypothetical protein; Provisional Back     alignment and domain information
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated Back     alignment and domain information
>PRK06184 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase Back     alignment and domain information
>PRK08132 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PRK07190 hypothetical protein; Provisional Back     alignment and domain information
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional Back     alignment and domain information
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family Back     alignment and domain information
>PRK06126 hypothetical protein; Provisional Back     alignment and domain information
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Back     alignment and domain information
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways Back     alignment and domain information
>PTZ00367 squalene epoxidase; Provisional Back     alignment and domain information
>PLN02985 squalene monooxygenase Back     alignment and domain information
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed Back     alignment and domain information
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion] Back     alignment and domain information
>TIGR02032 GG-red-SF geranylgeranyl reductase family Back     alignment and domain information
>TIGR02023 BchP-ChlP geranylgeranyl reductase Back     alignment and domain information
>PLN00093 geranylgeranyl diphosphate reductase; Provisional Back     alignment and domain information
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria Back     alignment and domain information
>PRK11445 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR02028 ChlP geranylgeranyl reductase Back     alignment and domain information
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>TIGR01790 carotene-cycl lycopene cyclase family protein Back     alignment and domain information
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] Back     alignment and domain information
>PRK10015 oxidoreductase; Provisional Back     alignment and domain information
>PRK10157 putative oxidoreductase FixC; Provisional Back     alignment and domain information
>TIGR01789 lycopene_cycl lycopene cyclase Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>PLN02697 lycopene epsilon cyclase Back     alignment and domain information
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] Back     alignment and domain information
>PLN02463 lycopene beta cyclase Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins Back     alignment and domain information
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>PRK12416 protoporphyrinogen oxidase; Provisional Back     alignment and domain information
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase Back     alignment and domain information
>TIGR02352 thiamin_ThiO glycine oxidase ThiO Back     alignment and domain information
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional Back     alignment and domain information
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton] Back     alignment and domain information
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed Back     alignment and domain information
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain Back     alignment and domain information
>PRK11883 protoporphyrinogen oxidase; Reviewed Back     alignment and domain information
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 Back     alignment and domain information
>PRK11259 solA N-methyltryptophan oxidase; Provisional Back     alignment and domain information
>TIGR02730 carot_isom carotene isomerase Back     alignment and domain information
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form Back     alignment and domain information
>TIGR02734 crtI_fam phytoene desaturase Back     alignment and domain information
>PRK00711 D-amino acid dehydrogenase small subunit; Validated Back     alignment and domain information
>PLN02612 phytoene desaturase Back     alignment and domain information
>PLN02568 polyamine oxidase Back     alignment and domain information
>PRK07233 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase Back     alignment and domain information
>PRK11728 hydroxyglutarate oxidase; Provisional Back     alignment and domain information
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD Back     alignment and domain information
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PLN02676 polyamine oxidase Back     alignment and domain information
>PLN02576 protoporphyrinogen oxidase Back     alignment and domain information
>COG2081 Predicted flavoproteins [General function prediction only] Back     alignment and domain information
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional Back     alignment and domain information
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed Back     alignment and domain information
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional Back     alignment and domain information
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO) Back     alignment and domain information
>TIGR00275 flavoprotein, HI0933 family Back     alignment and domain information
>PF13454 NAD_binding_9: FAD-NAD(P)-binding Back     alignment and domain information
>COG1231 Monoamine oxidase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional Back     alignment and domain information
>TIGR00292 thiazole biosynthesis enzyme Back     alignment and domain information
>PRK05257 malate:quinone oxidoreductase; Validated Back     alignment and domain information
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional Back     alignment and domain information
>COG0579 Predicted dehydrogenase [General function prediction only] Back     alignment and domain information
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases Back     alignment and domain information
>PLN02268 probable polyamine oxidase Back     alignment and domain information
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase Back     alignment and domain information
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] Back     alignment and domain information
>PRK06116 glutathione reductase; Validated Back     alignment and domain information
>PLN02464 glycerol-3-phosphate dehydrogenase Back     alignment and domain information
>PRK07846 mycothione reductase; Reviewed Back     alignment and domain information
>PRK09231 fumarate reductase flavoprotein subunit; Validated Back     alignment and domain information
>PTZ00383 malate:quinone oxidoreductase; Provisional Back     alignment and domain information
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional Back     alignment and domain information
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
3rp8_A407 Crystal Structure Of Klebsiella Pneumoniae R204q Hp 3e-22
3rp6_A407 Crystal Structure Of Klebsiella Pneumoniae Hpxo Com 1e-21
3c96_A410 Crystal Structure Of The Flavin-Containing Monooxyg 2e-17
2rgj_A402 Crystal Structure Of Flavin-Containing Monooxygenas 3e-16
3alh_A379 Higher Resolution And Native Structure Of 2-Methyl- 2e-08
3gmc_A415 Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C 2e-08
3all_A379 Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C 3e-08
3alk_A379 Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C 4e-08
3gmb_A415 Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C 2e-07
4hb9_A412 Crystal Structure Of A Putative Fad Containing Mono 2e-06
3alm_A379 Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-C 3e-04
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo Complexed With Fad Length = 407 Back     alignment and structure 
Iteration: 1

 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 115/239 (48%), Gaps = 13/239 (5%)
Query: 3   LQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLF 62
           LQ+ +    G + +     V   ++  D V+V   +G   +GDLLI ADG  S +R  + 
Sbjct: 129 LQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVL 188
Query: 63  G--PQEAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEP 120
           G  PQ   Y+GY  + G+ +   A      +  F+G  +      V AG+  ++     P
Sbjct: 189 GFTPQRR-YAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLP 247
Query: 121 AGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLLG 180
           AG  +  +  +  L + F GW   V  LI A D +   R +I+D  P     RGRV LLG
Sbjct: 248 AGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALLG 307
Query: 181 DSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 239
           D+ H+  P++GQGGC A+ED    AV L    +++       DI +AL+ YE  R  RV
Sbjct: 308 DAGHSTTPDIGQGGCAAMED----AVVLGAVFRQTR------DIAAALREYEAQRCDRV 356
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed With Fad Length = 407 Back     alignment and structure
>pdb|3C96|A Chain A, Crystal Structure Of The Flavin-Containing Monooxygenase Phzs From Pseudomonas Aeruginosa. Northeast Structural Genomics Consortium Target Par240 Length = 410 Back     alignment and structure
>pdb|2RGJ|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase Phzs Length = 402 Back     alignment and structure
>pdb|3ALH|A Chain A, Higher Resolution And Native Structure Of 2-Methyl-3-Hydroxypyridine- 5-Carboxylic Acid Oxygenase Length = 379 Back     alignment and structure
>pdb|3GMC|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase With Substrate Bound Length = 415 Back     alignment and structure
>pdb|3ALL|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270a Length = 379 Back     alignment and structure
>pdb|3ALK|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant Y270f Length = 379 Back     alignment and structure
>pdb|3GMB|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase Length = 415 Back     alignment and structure
>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing Monooxygenase From Photorhabdus Luminescens Subsp. Laumondii Tto1 (Target Psi-012791) Length = 412 Back     alignment and structure
>pdb|3ALM|A Chain A, Crystal Structure Of 2-Methyl-3-Hydroxypyridine-5-Carboxylic Acid Oxygenase, Mutant C294a Length = 379 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 8e-93
3alj_A379 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; 7e-68
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 1e-63
3c96_A410 Flavin-containing monooxygenase; FAD, oxidoreducta 2e-61
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 8e-57
3c4a_A381 Probable tryptophan hydroxylase VIOD; alpha-beta p 8e-25
2x3n_A399 Probable FAD-dependent monooxygenase; oxidoreducta 6e-14
1k0i_A394 P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h 1e-13
3ihm_A430 Styrene monooxygenase A; rossman fold, anti-parall 9e-13
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 8e-12
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 2e-11
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 3e-10
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 4e-10
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 9e-10
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 1e-09
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 2e-09
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 2e-09
2xt9_B115 Putative signal transduction protein GARA; lyase-s 2e-09
2r0c_A549 REBC; flavin adenine dinucleotide, monooxygenase, 3e-09
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 4e-09
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 8e-09
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 9e-09
3po8_A100 RV0020C protein, putative uncharacterized protein 9e-09
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 1e-08
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 2e-08
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 2e-08
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 3e-08
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 6e-08
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 9e-07
2qa2_A499 CABE, polyketide oxygenase CABE; FAD, angucycline, 1e-06
2qa1_A500 PGAE, polyketide oxygenase PGAE; FAD, angucycline, 2e-06
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 3e-06
3fmw_A570 Oxygenase; mithramycin, baeyer-villiger, flavin bi 7e-06
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 8e-06
3ihg_A535 RDME; flavoenzyme, anthracycline, polyketide biosy 2e-05
2dkh_A639 3-hydroxybenzoate hydroxylase; flavoprotein, monoo 2e-05
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 4e-05
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 7e-05
3atr_A453 Conserved archaeal protein; saturating double bond 8e-05
3i3l_A591 Alkylhalidase CMLS; flavin-dependent halogenase, c 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407 Back     alignment and structure
 Score =  286 bits (734), Expect = 8e-93
 Identities = 75/251 (29%), Positives = 113/251 (45%), Gaps = 11/251 (4%)

Query: 1   MTLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKN 60
             LQ+ +    G + +     V   ++  D V+V   +G   +GDLLI ADG  S +R  
Sbjct: 127 AELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPW 186

Query: 61  LFGPQ-EAIYSGYTCYTGIADFVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKE 119
           + G   +  Y+GY  + G+ +   A      +  F+G  +      V AG+  ++     
Sbjct: 187 VLGFTPQRRYAGYVNWNGLVEIDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPL 246

Query: 120 PAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRRDIYDRTPIFTWGRGRVTLL 179
           PAG  +  +  +  L + F GW   V  LI A D +   R +I+D  P     RGRV LL
Sbjct: 247 PAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRIEIHDIEPFSRLVRGRVALL 306

Query: 180 GDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRV 239
           GD+ H+  P++GQGGC A+ED   L     +            DI +AL+ YE  R  RV
Sbjct: 307 GDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT----------RDIAAALREYEAQRCDRV 356

Query: 240 AVIHGLARSAA 250
             +   AR   
Sbjct: 357 RDLVLKARKRC 367
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379 Back     alignment and structure
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398 Back     alignment and structure
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410 Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397 Back     alignment and structure
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381 Back     alignment and structure
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Length = 399 Back     alignment and structure
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Length = 394 Back     alignment and structure
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115 Back     alignment and structure
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Length = 549 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131 Back     alignment and structure
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Length = 499 Back     alignment and structure
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Length = 500 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Length = 570 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Length = 120 Back     alignment and structure
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Length = 535 Back     alignment and structure
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Length = 639 Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Length = 124 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453 Back     alignment and structure
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
3rp8_A407 Flavoprotein monooxygenase; FAD-binding protein, o 100.0
4hb9_A412 Similarities with probable monooxygenase; flavin, 100.0
2xdo_A398 TETX2 protein; tetracycline degradation, tigecycli 99.97
2vou_A397 2,6-dihydroxypyridine hydroxylase; oxidoreductase, 99.97
2qa2_A499 CABE, polyketide oxygenase CABE; FAD, angucycline, 99.96
2qa1_A500 PGAE, polyketide oxygenase PGAE; FAD, angucycline, 99.96
3fmw_A570 Oxygenase; mithramycin, baeyer-villiger, flavin bi 99.96
2x3n_A399 Probable FAD-dependent monooxygenase; oxidoreducta 99.96
3c96_A410 Flavin-containing monooxygenase; FAD, oxidoreducta 99.96
1pn0_A665 Phenol 2-monooxygenase; two dimers, TLS refinement 99.95
3alj_A379 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; 99.94
1k0i_A394 P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h 99.94
2r0c_A549 REBC; flavin adenine dinucleotide, monooxygenase, 99.94
3ihg_A535 RDME; flavoenzyme, anthracycline, polyketide biosy 99.94
2dkh_A639 3-hydroxybenzoate hydroxylase; flavoprotein, monoo 99.93
3c4a_A381 Probable tryptophan hydroxylase VIOD; alpha-beta p 99.92
3atr_A453 Conserved archaeal protein; saturating double bond 99.9
3e1t_A512 Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro 99.89
3oz2_A397 Digeranylgeranylglycerophospholipid reductase; str 99.89
3cgv_A397 Geranylgeranyl reductase related protein; NP_39399 99.88
3i3l_A591 Alkylhalidase CMLS; flavin-dependent halogenase, c 99.86
2gmh_A584 Electron transfer flavoprotein-ubiquinone oxidored 99.84
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.83
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.82
3nix_A421 Flavoprotein/dehydrogenase; structural genomics, P 99.81
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.8
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.8
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.8
2pyx_A526 Tryptophan halogenase; structural genomics, JOI fo 99.8
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.79
3po8_A100 RV0020C protein, putative uncharacterized protein 99.79
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.79
2weu_A511 Tryptophan 5-halogenase; regioselectivity, antifun 99.78
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.78
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.78
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.77
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.77
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.76
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.76
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.76
2aqj_A538 Tryptophan halogenase, pRNA; flavin-dependent halo 99.76
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.75
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.75
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.75
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.75
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.74
3ihm_A430 Styrene monooxygenase A; rossman fold, anti-parall 99.73
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.73
2e4g_A550 Tryptophan halogenase; flavin-binding, rebeccamyci 99.73
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.73
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.72
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.7
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.69
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.64
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.58
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.57
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 99.57
2bry_A497 NEDD9 interacting protein with calponin homology a 99.36
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 99.35
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.34
4a0e_A123 YSCD, type III secretion protein; transport protei 99.32
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 99.2
3i6u_A 419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 99.18
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 99.04
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 99.01
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 99.0
1yvv_A336 Amine oxidase, flavin-containing; oxidoreductase, 98.97
1wv3_A238 Similar to DNA segregation ATPase and related prot 98.6
1ryi_A382 Glycine oxidase; flavoprotein, protein-inhibitor c 97.93
2gag_B405 Heterotetrameric sarcosine oxidase beta-subunit; f 97.89
1y56_B382 Sarcosine oxidase; dehydrogenase, protein-protein 97.44
3ps9_A676 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 97.22
2gf3_A389 MSOX, monomeric sarcosine oxidase; flavoprotein ox 97.22
4dgk_A501 Phytoene dehydrogenase; the FAD/NAD(P)-binding ros 97.11
3pvc_A689 TRNA 5-methylaminomethyl-2-thiouridine biosynthes 97.07
3i6d_A470 Protoporphyrinogen oxidase; protein-inhibitor comp 96.97
2qcu_A501 Aerobic glycerol-3-phosphate dehydrogenase; glycer 96.96
3dme_A369 Conserved exported protein; structural genomics, P 96.85
3nyc_A381 D-arginine dehydrogenase; FAD, imino-arginine, oxi 96.79
2oln_A397 NIKD protein; flavoprotein, rossmann fold, oxidore 96.62
3kkj_A336 Amine oxidase, flavin-containing; oxidoreductase, 96.09
2ywl_A180 Thioredoxin reductase related protein; uncharacter 95.94
3v76_A417 Flavoprotein; structural genomics, PSI-biology, NE 95.88
2i0z_A447 NAD(FAD)-utilizing dehydrogenases; structural geno 95.78
2cul_A232 Glucose-inhibited division protein A-related PROT 95.52
3nlc_A549 Uncharacterized protein VP0956; FAD-binding protei 95.49
3ka7_A425 Oxidoreductase; structural genomics, PSI-2, protei 95.43
3lov_A475 Protoporphyrinogen oxidase; structural genomics, J 95.32
3nrn_A421 Uncharacterized protein PF1083; alpha-beta protein 95.13
2vvm_A495 Monoamine oxidase N; FAD, peroxisome, flavoprotein 95.12
3dje_A438 Fructosyl amine: oxygen oxidoreductase; fructosyl- 94.87
1rp0_A284 ARA6, thiazole biosynthetic enzyme; protein ligand 94.66
3axb_A448 Putative oxidoreductase; dinucleotide-binding fold 94.51
2gv8_A447 Monooxygenase; FMO, FAD, NADPH, cofactor complex, 94.45
3ab1_A360 Ferredoxin--NADP reductase; oxidoreductase, electr 94.38
3da1_A561 Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 93.8
3c4n_A405 Uncharacterized protein DR_0571; alpha-beta protei 93.75
2zbw_A335 Thioredoxin reductase; redox protein, oxidoreducta 93.63
2gqf_A401 Hypothetical protein HI0933; structural genomics, 93.39
2uzz_A372 N-methyl-L-tryptophan oxidase; N-methyltryptophan 93.37
1w4x_A542 Phenylacetone monooxygenase; baeyer-villiger, FAD; 93.02
3gwf_A540 Cyclohexanone monooxygenase; flavoprotein biocatal 92.98
4a9w_A357 Monooxygenase; baeyer-villiger, FAD, oxidoreductas 92.88
1qo8_A566 Flavocytochrome C3 fumarate reductase; oxidoreduct 92.76
1sez_A504 Protoporphyrinogen oxidase, mitochondrial; FAD-bin 92.72
2v3a_A384 Rubredoxin reductase; alkane degradation, NADH oxi 92.66
2q0l_A311 TRXR, thioredoxin reductase; bacterial thiredoxin 92.44
3jsk_A344 Cypbp37 protein; octameric thiazole synthase, bios 92.3
3qj4_A342 Renalase; FAD/NAD(P)-binding rossmann fold superfa 92.12
1b37_A472 Protein (polyamine oxidase); flavin-dependent amin 92.08
1rsg_A516 FMS1 protein; FAD binding motif, oxidoreductase; H 91.47
1y0p_A571 Fumarate reductase flavoprotein subunit; flavocyto 91.38
2yqu_A455 2-oxoglutarate dehydrogenase E3 component; lipoami 91.37
2jae_A489 L-amino acid oxidase; oxidoreductase, dimerisation 91.01
4ap3_A549 Steroid monooxygenase; oxidoreductase, baeyer-vill 90.86
3ces_A651 MNMG, tRNA uridine 5-carboxymethylaminomethyl modi 90.4
3k7m_X431 6-hydroxy-L-nicotine oxidase; enantiomeric substra 89.96
3cp8_A641 TRNA uridine 5-carboxymethylaminomethyl modificati 89.62
1vdc_A333 NTR, NADPH dependent thioredoxin reductase; hypoth 89.56
3uox_A545 Otemo; baeyer-villiger monooxygenase, oxidoreducta 89.53
1kf6_A602 Fumarate reductase flavoprotein; respiration, fuma 89.5
3fbs_A297 Oxidoreductase; structural genomics, PSI2, MCSG, p 88.88
1fl2_A310 Alkyl hydroperoxide reductase subunit F; reactive 88.68
1s3e_A520 Amine oxidase [flavin-containing] B; human monoami 88.49
1ges_A450 Glutathione reductase; oxidoreductase(flavoenzyme) 88.25
2r9z_A463 Glutathione amide reductase; NAD, FAD, substrate s 88.12
2eq6_A464 Pyruvate dehydrogenase complex, dihydrolipoamide d 88.05
1d4d_A572 Flavocytochrome C fumarate reductase; oxidoreducta 87.95
3o0h_A484 Glutathione reductase; ssgcid, structur genomics, 87.46
2zxi_A637 TRNA uridine 5-carboxymethylaminomethyl modificat 87.43
3lzw_A332 Ferredoxin--NADP reductase 2; ferredoxin reductase 86.08
2xve_A464 Flavin-containing monooxygenase; oxidoreductase; H 85.83
1pj5_A 830 N,N-dimethylglycine oxidase; channelling, FAD bind 85.53
3cty_A319 Thioredoxin reductase; FAD, oxidoreductase, flavin 85.5
1m6i_A493 Programmed cell death protein 8; apoptosis, AIF, o 85.31
2iid_A498 L-amino-acid oxidase; flavoenzyme, FAD binding dom 84.91
1xdi_A499 RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun 84.29
4gut_A776 Lysine-specific histone demethylase 1B; histone de 83.83
3iwa_A472 FAD-dependent pyridine nucleotide-disulphide oxido 83.21
2z3y_A662 Lysine-specific histone demethylase 1; chromatin, 82.91
3fg2_P404 Putative rubredoxin reductase; ferredoxin reductas 82.56
2q7v_A325 Thioredoxin reductase; rossman fold, FAD, flavopro 82.42
1hyu_A521 AHPF, alkyl hydroperoxide reductase subunit F; thi 81.78
1trb_A320 Thioredoxin reductase; oxidoreductase(flavoenzyme) 81.59
2a87_A335 TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL 81.48
2ivd_A478 PPO, PPOX, protoporphyrinogen oxidase; porphyrin b 81.45
1mo9_A523 ORF3; nucleotide binding motifs, nucleotide bindin 81.37
3lxd_A415 FAD-dependent pyridine nucleotide-disulphide oxido 80.91
1fec_A490 Trypanothione reductase; redox-active center, oxid 80.89
2rgh_A571 Alpha-glycerophosphate oxidase; flavoprotein oxida 80.78
1ebd_A455 E3BD, dihydrolipoamide dehydrogenase; redox-active 80.65
2qae_A468 Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin 80.38
1ojt_A482 Surface protein; redox-active center, glycolysis, 80.21
3d1c_A369 Flavin-containing putative monooxygenase; NP_37310 80.01
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Back     alignment and structure
Probab=100.00  E-value=1.4e-32  Score=278.22  Aligned_cols=260  Identities=29%  Similarity=0.420  Sum_probs=206.1

Q ss_pred             hHHHHHhhccCCCeEEcCcEEEEEEeeCCeEEEEEcCCcEEEecEEEEecCCCCcccccccCC-CCCcccceEEEEEEec
Q 011888            2 TLQQILAKAVGDEIILNESNVIDFKDHGDKVSVVLENGQCYAGDLLIGADGIWSKVRKNLFGP-QEAIYSGYTCYTGIAD   80 (475)
Q Consensus         2 ~L~~~L~~~~~~~~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~~l~~~-~~~~~~~~~~~~~~~~   80 (475)
                      +|+++|.+.+....|+++++|++++.++++|+|+++||++++||+||||||.+|.||+.+.+. ..+.|.++.++.+.++
T Consensus       128 ~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~  207 (407)
T 3rp8_A          128 ELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADGSHSALRPWVLGFTPQRRYAGYVNWNGLVE  207 (407)
T ss_dssp             HHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCCTTCSSHHHHHSSCCCCEEEEEEEEEEEEE
T ss_pred             HHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCCcChHHHHHhcCCCCCCcccCcEEEEEEEe
Confidence            578888888776779999999999999999999999999999999999999999999999443 3666777777777655


Q ss_pred             cCCCCcCCcceEEEecCceEEEEEeCCCCeEEEEEEEeCCCCCCCCCcchHHHHHHHhhCCChHHHHHHHhCCccceeec
Q 011888           81 FVPADIESVGYRVFLGHKQYFVSSDVGAGKMQWYAFHKEPAGGVDGPEGKKERLLKIFEGWCDNVVDLILATDEEAILRR  160 (475)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (475)
                      ..........+..|.+++.+++.+|.+++...|++....+......+....+.+.+.|..|.+.+..++..........+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (407)
T 3rp8_A          208 IDEALAPGDQWTTFVGEGKQVSLMPVSAGRFYFFFDVPLPAGLAEDRDTLRADLSRYFAGWAPPVQKLIAALDPQTTNRI  287 (407)
T ss_dssp             CCTTTCCTTEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTCSCCTTTHHHHHHHHTTTCCHHHHHHHHHSCGGGCEEE
T ss_pred             cccccCCCCceEEEECCCcEEEEEEcCCCeEEEEEEeCCCcCCCCCchhHHHHHHHHhcCCChHHHHHHHcCCccceeEE
Confidence            32222334456677788888999999999988887776544333334566788999999999999888877765554445


Q ss_pred             ccccCCCCccccCCcEEEEcccccccCCccccchhhhHHHHHHHHHHHHHHhhccCCCCChhhHHHHHHHHHHHhhHHHH
Q 011888          161 DIYDRTPIFTWGRGRVTLLGDSVHAMQPNLGQGGCMAIEDGYQLAVELEKACKKSNESKTPIDIVSALKSYERARRLRVA  240 (475)
Q Consensus       161 ~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~~~~~~~~~~~~~~~~~~L~~Y~~~R~~~~~  240 (475)
                      .++......+|+.+||+|+|||||.|+|++|||+|+||+||..|+++|...         . +.+.+|+.|+++|++++.
T Consensus       288 ~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~al~da~~La~~L~~~---------~-~~~~~l~~Y~~~r~~~~~  357 (407)
T 3rp8_A          288 EIHDIEPFSRLVRGRVALLGDAGHSTTPDIGQGGCAAMEDAVVLGAVFRQT---------R-DIAAALREYEAQRCDRVR  357 (407)
T ss_dssp             EEEECCCCSCCEETTEEECGGGTCCCCGGGSCHHHHHHHHHHHHHHHHHSC---------C-CHHHHHHHHHHHHHHHHH
T ss_pred             eeEecCCCCceecCCEEEEEcccccCCcchhhhHHHHHHHHHHHHHHHhcC---------C-CHHHHHHHHHHHHHHHHH
Confidence            555555558999999999999999999999999999999999999999842         1 568999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhhhcCCCCccchhhhcccCCC
Q 011888          241 VIHGLARSAAVMASTYKAYLGVGLGPLSFLTKFRIPHP  278 (475)
Q Consensus       241 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~  278 (475)
                      .++..++.+..+..       ...++...+|+..+...
T Consensus       358 ~~~~~s~~~~~~~~-------~~~~~~~~~R~~~l~~~  388 (407)
T 3rp8_A          358 DLVLKARKRCDITH-------GKDMQLTEAWYQELREE  388 (407)
T ss_dssp             HHHHHHHHHHHHHT-------TTTHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhhhhhh-------cCCHHHHHHHHHHHhhc
Confidence            99988877554432       33445667788776544
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} Back     alignment and structure
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Back     alignment and structure
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Back     alignment and structure
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} Back     alignment and structure
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} Back     alignment and structure
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} Back     alignment and structure
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Back     alignment and structure
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* Back     alignment and structure
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Back     alignment and structure
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... Back     alignment and structure
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* Back     alignment and structure
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} Back     alignment and structure
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* Back     alignment and structure
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Back     alignment and structure
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Back     alignment and structure
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Back     alignment and structure
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} Back     alignment and structure
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Back     alignment and structure
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* Back     alignment and structure
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Back     alignment and structure
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* Back     alignment and structure
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Back     alignment and structure
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* Back     alignment and structure
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* Back     alignment and structure
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} Back     alignment and structure
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* Back     alignment and structure
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Back     alignment and structure
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* Back     alignment and structure
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Back     alignment and structure
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* Back     alignment and structure
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Back     alignment and structure
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} Back     alignment and structure
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Back     alignment and structure
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Back     alignment and structure
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 Back     alignment and structure
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} Back     alignment and structure
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Back     alignment and structure
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Back     alignment and structure
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Back     alignment and structure
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Back     alignment and structure
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* Back     alignment and structure
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Back     alignment and structure
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Back     alignment and structure
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Back     alignment and structure
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Back     alignment and structure
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} Back     alignment and structure
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Back     alignment and structure
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Back     alignment and structure
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 Back     alignment and structure
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} Back     alignment and structure
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Back     alignment and structure
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Back     alignment and structure
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Back     alignment and structure
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Back     alignment and structure
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Back     alignment and structure
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Back     alignment and structure
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Back     alignment and structure
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Back     alignment and structure
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Back     alignment and structure
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Back     alignment and structure
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Back     alignment and structure
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Back     alignment and structure
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Back     alignment and structure
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Back     alignment and structure
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Back     alignment and structure
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A Back     alignment and structure
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Back     alignment and structure
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} Back     alignment and structure
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Back     alignment and structure
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Back     alignment and structure
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* Back     alignment and structure
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Back     alignment and structure
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Back     alignment and structure
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Back     alignment and structure
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Back     alignment and structure
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Back     alignment and structure
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Back     alignment and structure
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Back     alignment and structure
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Back     alignment and structure
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* Back     alignment and structure
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Back     alignment and structure
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Back     alignment and structure
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* Back     alignment and structure
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Back     alignment and structure
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Back     alignment and structure
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Back     alignment and structure
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Back     alignment and structure
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* Back     alignment and structure
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Back     alignment and structure
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Back     alignment and structure
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Back     alignment and structure
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Back     alignment and structure
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Back     alignment and structure
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Back     alignment and structure
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Back     alignment and structure
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Back     alignment and structure
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Back     alignment and structure
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Back     alignment and structure
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Back     alignment and structure
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* Back     alignment and structure
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Back     alignment and structure
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Back     alignment and structure
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Back     alignment and structure
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 475
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 1e-09
d1mzka_122 b.26.1.2 (A:) Kinase associated protein phosphatas 3e-09
d3c96a1288 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps 9e-08
d1pn0a1360 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So 3e-07
d1dmza_158 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 5e-07
d2piea1127 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 5e-06
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 1e-05
d2affa198 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapi 1e-05
d1gxca_116 b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T 2e-05
d2voua1265 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr 4e-05
d2g1la1102 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {H 4e-05
d1wlna1107 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [T 8e-05
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 53.5 bits (128), Expect = 1e-09
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 9/91 (9%)

Query: 362 HENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNEG 421
                  +G     +     I I  A +S  H RI    G + + DL S +GT +  N  
Sbjct: 30  KPGSTIRVGRIVRGN----EIAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTLLNSN-- 83

Query: 422 RRYRVSSNFPARFRPSDTIEFGSDKKAIFRV 452
               +           D I+ G     +   
Sbjct: 84  ---ALDPETSVNLGDGDVIKLGEYTSILVNF 111
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 Back     information, alignment and structure
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 Back     information, alignment and structure
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360 Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.82
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.81
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.8
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.79
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.75
d3c96a1288 Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 99.74
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.7
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.7
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.7
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.68
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.64
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.6
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.53
d1pn0a1360 Phenol hydroxylase {Soil-living yeast (Trichosporo 99.51
d1k0ia1292 p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a 99.29
d2voua1265 Dihydroxypyridine hydroxylase DhpH {Arthrobacter n 99.25
d2gmha1380 Electron transfer flavoprotein-ubiquinone oxidored 97.43
d3c96a2111 Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 97.21
d2i0za1251 Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] 97.06
d2voua2128 Dihydroxypyridine hydroxylase DhpH {Arthrobacter n 96.9
d1b5qa1347 Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} 96.61
d1m6ia2137 Apoptosis-inducing factor (AIF) {Human (Homo sapie 95.95
d2gv8a1335 Flavin-dependent monoxygenase SPBP16F5.08c {Schizo 95.17
d1aoga2117 Trypanothione reductase {Trypanosoma cruzi [TaxId: 94.47
d1feca2117 Trypanothione reductase {Crithidia fasciculata [Ta 93.64
d3lada2119 Dihydrolipoamide dehydrogenase {Azotobacter vinela 93.06
d1gesa2116 Glutathione reductase {Escherichia coli [TaxId: 56 92.97
d1ryia1276 Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} 92.54
d2gqfa1253 Hypothetical protein HI0933 {Haemophilus influenza 92.32
d2gf3a1281 Sarcosine oxidase {Bacillus sp., strain b0618 [Tax 92.06
d1ojta2125 Dihydrolipoamide dehydrogenase {Neisseria meningit 91.42
d1onfa2117 Glutathione reductase {Plasmodium falciparum [TaxI 90.35
d1pj5a2305 N,N-dimethylglycine oxidase {Arthrobacter globifor 89.53
d1ebda2117 Dihydrolipoamide dehydrogenase {Bacillus stearothe 89.36
d1v59a2122 Dihydrolipoamide dehydrogenase {Baker's yeast (Sac 88.73
d1nhpa2123 NADH peroxidase {Enterococcus faecalis [TaxId: 135 88.49
d2v5za1383 Monoamine oxidase B {Human (Homo sapiens) [TaxId: 88.35
d1w4xa1298 Phenylacetone monooxygenase {Thermobifida fusca [T 87.71
d1q1ra2133 Putidaredoxin reductase {Pseudomonas putida [TaxId 87.2
d1d7ya2121 NADH-dependent ferredoxin reductase, BphA4 {Pseudo 86.94
d1d5ta1336 Guanine nucleotide dissociation inhibitor, GDI {Co 86.0
d1dxla2123 Dihydrolipoamide dehydrogenase {Garden pea (Pisum 85.62
d1m6ia1213 Apoptosis-inducing factor (AIF) {Human (Homo sapie 84.68
d2iida1370 L-aminoacid oxidase {Malayan pit viper (Calloselas 83.73
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Probable regulatory protein EmbR, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.82  E-value=2e-20  Score=146.58  Aligned_cols=91  Identities=26%  Similarity=0.335  Sum_probs=78.2

Q ss_pred             EEEEecCCCCcccccEEEeecCCCCCEEecCCCCCCCCCceeeeCCccccccceEEEEECCeEEEEEcCCccceeeccCC
Q 011888          341 WFLVPSGSENVVSQPIYLSVSHENEPYLIGSESHEDFSRTSIVIPSAQVSKMHARISYKDGAFYLIDLQSEHGTYVTDNE  420 (475)
Q Consensus       341 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~iGR~~~~~~~~~~i~~~~~~vSr~Ha~i~~~~~~~~i~D~~S~nGt~vn~~~  420 (475)
                      ++|.....+    +.++|.    ...++|||+++|+     |+++++.|||.||+|.++++.|+|+|++|+|||||||. 
T Consensus         7 ~~l~~~~~G----~~~~l~----~~~~~IGR~~~~d-----i~l~d~~VSr~Ha~i~~~~~~~~i~Dl~S~nGt~vNg~-   72 (99)
T d2ff4a3           7 AYLHDIASG----RGYPLQ----AAATRIGRLHDND-----IVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHE-   72 (99)
T ss_dssp             CEEEETTTC----CEEECC----SSEEEEESSTTSS-----EECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEETTE-
T ss_pred             EEEEcCCCC----CEEEEC----CCCEEEeeCcCCC-----EEECCccccceeEEEEEeCCEEEEEECCCcCCCeECCE-
Confidence            455555544    889998    4459999999887     99999999999999999999999999999999999999 


Q ss_pred             CceeecCCCCcEEeCCCCEEEeCCCceEEEEEEE
Q 011888          421 GRRYRVSSNFPARFRPSDTIEFGSDKKAIFRVKV  454 (475)
Q Consensus       421 ~~~~~~~~~~~~~l~~gd~i~~g~~~~~~~~~~~  454 (475)
                          ++.  .+++|++||+|+||+.   .|+|++
T Consensus        73 ----~i~--~~~~L~~Gd~i~iG~~---~~~f~~   97 (99)
T d2ff4a3          73 ----RIR--SAVTLNDGDHIRICDH---EFTFQI   97 (99)
T ss_dssp             ----ECS--SEEEECTTCEEEETTE---EEEEEC
T ss_pred             ----EcC--CceECCCCCEEEECCE---EEEEEE
Confidence                885  4688999999999998   555554
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Back     information, alignment and structure
>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d3c96a2 d.16.1.2 (A:183-293) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2voua2 d.16.1.2 (A:164-291) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Back     information, alignment and structure
>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Back     information, alignment and structure
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Back     information, alignment and structure
>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Back     information, alignment and structure
>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Back     information, alignment and structure
>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Back     information, alignment and structure
>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Back     information, alignment and structure
>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Back     information, alignment and structure