Citrus Sinensis ID: 011905
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LVS3 | 477 | Pentatricopeptide repeat- | yes | no | 0.983 | 0.979 | 0.536 | 1e-140 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.867 | 0.645 | 0.276 | 6e-40 | |
| Q9LPX2 | 644 | Pentatricopeptide repeat- | no | no | 0.597 | 0.440 | 0.312 | 1e-38 | |
| Q9FH87 | 637 | Putative pentatricopeptid | no | no | 0.903 | 0.673 | 0.271 | 1e-38 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.711 | 0.448 | 0.301 | 2e-38 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.589 | 0.377 | 0.295 | 2e-38 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.732 | 0.465 | 0.271 | 5e-37 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.597 | 0.457 | 0.322 | 6e-37 | |
| Q9SSR6 | 523 | Pentatricopeptide repeat- | no | no | 0.797 | 0.724 | 0.266 | 1e-36 | |
| Q0WKZ3 | 523 | Pentatricopeptide repeat- | no | no | 0.646 | 0.586 | 0.303 | 1e-36 |
| >sp|Q9LVS3|PP422_ARATH Pentatricopeptide repeat-containing protein At5g47360 OS=Arabidopsis thaliana GN=At5g47360 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 497 bits (1279), Expect = e-140, Method: Compositional matrix adjust.
Identities = 254/473 (53%), Positives = 339/473 (71%), Gaps = 6/473 (1%)
Query: 1 MPRFSLSRILSSSVNIKNSKIFALHF-TTASPAERFYTHLQKNPNNIEKTLATVKAKLDS 59
MP +SR++S S+ + SKI AL F TT S AER Y LQ +N+EK LA+ +LDS
Sbjct: 1 MPNSLISRLVSPSLRSQPSKISALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDS 60
Query: 60 TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
+C+ EVL RC P+Q Q G+RFFIWA SS+RHS++MY +AC++ +I+ P +I V+E+
Sbjct: 61 SCINEVLRRCDPNQFQSGLRFFIWAGTLSSHRHSAYMYTKACDILKIRAKPDLIKYVIES 120
Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
Y++E C V+VK M+++ LC +A LA+EA+WVLRK PEF++ DT+ YN VIRLF +KGD
Sbjct: 121 YRKEECFVNVKTMRIVLTLCNQANLADEALWVLRKFPEFNVCADTVAYNLVIRLFADKGD 180
Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
+ AD L+K M + LYPD+ITY SMI G+CNAG+++DA L K M +H C N V YS
Sbjct: 181 LNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSR 240
Query: 240 LLDGICRLGSMERALELLGEMEKE--GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
+L+G+C+ G MERALELL EMEKE GG SPN VTYT VIQ FC K ++EAL +LDRM
Sbjct: 241 ILEGVCKSGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRM 300
Query: 298 EALGCAPNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
GC PNRVT LI+G +E + D +LIDK+V G VS C+SS V L+R K
Sbjct: 301 GNRGCMPNRVTACVLIQGV-LENDEDVKALSKLIDKLVKLGGVSLSECFSSATVSLIRMK 359
Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
R +EAEK+F ML GV+PDGLACS + RELCL + L+ F LY++IEK S++DSDI
Sbjct: 360 RWEEAEKIFRLMLVRGVRPDGLACSHVFRELCLLERYLDCFLLYQEIEKKDVKSTIDSDI 419
Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
H+VLLLGLC++ +S EAAKLA+ ML K++ L+ +V+KI+E LKK+GDE+L++
Sbjct: 420 HAVLLLGLCQQGNSWEAAKLAKSMLDKKMRLKVSHVEKIIEALKKTGDEDLMS 472
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 119/431 (27%), Positives = 211/431 (48%), Gaps = 19/431 (4%)
Query: 29 ASPAERFYTHLQKNPNNIEK-TLATVKAKLD--STCVIEVLHRCFPSQSQMGIRFFIWAA 85
A E+ Y L+ + + + K LA ++ +D +I VL RC +G RFF+WA
Sbjct: 64 AGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRC-GDAGNLGYRFFLWAT 122
Query: 86 LQSSYRHSSFMYNRACE-----MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140
Q Y HS C+ +S+++Q ++ + E K ++ ++ V+
Sbjct: 123 KQPGYFHSY----EVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFA 178
Query: 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII 200
A + +A+ VL +MP++ L PD ++ ++ C+ G + A ++ + M P++
Sbjct: 179 SANMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMRE-KFPPNLR 237
Query: 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260
+ S++ G+C G+L +A + MK G ++V ++ LL G G M A +L+ +M
Sbjct: 238 YFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDM 297
Query: 261 EKEGGDCSPNVVTYTSVIQIFC-GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
K G + PNV YT +IQ C + M EA+ + ME GC + VT + LI GFC
Sbjct: 298 RKRGFE--PNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKW 355
Query: 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
G +D+ Y ++D + G + S Y ++V + ++ +E +L KM G PD L
Sbjct: 356 GMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIY 415
Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439
+V+IR C G+V E L+ ++E G VD+ + +++ G + +EA + M
Sbjct: 416 NVVIRLACKLGEVKEAVRLWNEMEANGLSPGVDTFV--IMINGFTSQGFLIEACNHFKEM 473
Query: 440 LKKRIWLQGPY 450
+ + I+ Y
Sbjct: 474 VSRGIFSAPQY 484
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 164/288 (56%), Gaps = 4/288 (1%)
Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
AM +LRKM E +++ D + Y+ +I C+ G + A L M + DIITY ++I
Sbjct: 247 AMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIG 306
Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
GFCNAGR +D L + M + + N+V +S L+D + G + A +LL EM + G
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRG--I 364
Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
+PN +TY S+I FC + ++EA+ ++D M + GC P+ +T + LI G+C +D+ +
Sbjct: 365 APNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLE 424
Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
L ++ G +++ Y++LV ++ +L+ A+KLF +M++ V+PD ++ +++ LC
Sbjct: 425 LFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLC 484
Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
G++ + ++ IEK +D I+ +++ G+C + +A L
Sbjct: 485 DNGELEKALEIFGKIEKSKM--ELDIGIYMIIIHGMCNASKVDDAWDL 530
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 121/445 (27%), Positives = 218/445 (48%), Gaps = 16/445 (3%)
Query: 11 SSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEK---TLATVKAKLDSTCVIEVLH 67
S + KNSK + AS E+ Y L+K + + K L +L + VL+
Sbjct: 66 SHNDRTKNSK----YDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLN 121
Query: 68 RCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCV 126
RC +G RFF+WAA Q Y HS +Y + +S+++Q ++ + E KE +
Sbjct: 122 RC-GDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQL 180
Query: 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186
+ ++ V+ A + +A+ VL +MP+F PD ++ ++ C+ G + A +L
Sbjct: 181 IEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKL 240
Query: 187 MKGMGLIDLYP-DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245
+ M + +P ++ + S++ G+C G++ +A + M G ++V Y+ LL G
Sbjct: 241 FEDMRM--RFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYA 298
Query: 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
G M A +LL +M + G + PN YT +IQ C M+EA+ + ME C +
Sbjct: 299 NAGKMADAYDLLRDMRRRGFE--PNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEAD 356
Query: 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365
VT + L+ GFC G +D+ Y ++D ++ G + S Y ++V + + +E +L
Sbjct: 357 VVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELME 416
Query: 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425
KM PD +V+IR C G+V E L+ ++E+ G VD+ + +++ GL
Sbjct: 417 KMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFV--IMINGLAS 474
Query: 426 KNHSVEAAKLARFMLKKRIWLQGPY 450
+ +EA+ + M+ + ++ Y
Sbjct: 475 QGCLLEASDHFKEMVTRGLFSVSQY 499
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/348 (30%), Positives = 176/348 (50%), Gaps = 10/348 (2%)
Query: 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAMWVLRK 154
+ N C+ +K I++++ +EG V VI LC+ + EA+ VL +
Sbjct: 301 LVNGLCKAGHVKH----AIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEV-KEAVEVLDQ 355
Query: 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214
M D P+T+ YN +I C++ + A EL + + + PD+ T+ S+I+G C
Sbjct: 356 MITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415
Query: 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274
A LF+ M+ GC + Y+ L+D +C G ++ AL +L +ME G C+ +V+TY
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG--CARSVITY 473
Query: 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334
++I FC +EA I D ME G + N VT +TLI G C +++A QL+D+++
Sbjct: 474 NTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 533
Query: 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394
G Y+SL+ R +K+A + M ++G +PD + +I LC G+V
Sbjct: 534 EGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEV 593
Query: 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442
L I+ G ++ ++ ++ GL RK + EA L R ML++
Sbjct: 594 ASKLLRSIQMKGI--NLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQ 639
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 158/315 (50%), Gaps = 35/315 (11%)
Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
+M D+ PD + Y +I FC+ GDM+ A +L M L PD +T+ +I G+C AG
Sbjct: 376 EMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAG 435
Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK----------- 262
++DA + M + GC+ N+V Y+ L+DG+C+ G ++ A ELL EM K
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 495
Query: 263 ----------------------EGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
E + + VTYT+++ +C G M +A IL M
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK 555
Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
G P VT + L+ GFC+ G L++ +L++ ++A G + ++SLV + LK A
Sbjct: 556 GLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAA 615
Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
++ M + GV PDG +++ C + E + L+++++ GF SV + +SVL+
Sbjct: 616 TAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVST--YSVLI 673
Query: 421 LGLCRKNHSVEAAKL 435
G ++ +EA ++
Sbjct: 674 KGFLKRKKFLEAREV 688
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 104/383 (27%), Positives = 181/383 (47%), Gaps = 35/383 (9%)
Query: 86 LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA 145
L+S + F YN N + + + + + +GC+ +V + + K R
Sbjct: 197 LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKI 256
Query: 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205
++ +LR M L P+ I YN VI C +G M ++ M D +TY ++
Sbjct: 257 DDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTL 316
Query: 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG- 264
IKG+C G A + M RHG +++ Y++L+ +C+ G+M RA+E L +M G
Sbjct: 317 IKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376
Query: 265 --------------------------------GDCSPNVVTYTSVIQIFCGKGMMKEALG 292
SP+VVTY ++I C G M++A+
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIA 436
Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352
+L+ M+ G +P+ V+ ST++ GFC ++DEA ++ ++V G YSSL+
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412
+R KEA L+ +ML G+ PD + +I C+ G + + L+ ++ + G L V
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVV 556
Query: 413 SDIHSVLLLGLCRKNHSVEAAKL 435
+ +SVL+ GL +++ + EA +L
Sbjct: 557 T--YSVLINGLNKQSRTREAKRL 577
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (392), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 93/288 (32%), Positives = 158/288 (54%), Gaps = 4/288 (1%)
Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
AM +LRKM E ++ D + Y+ +I C+ G + A L M + DII Y ++I+
Sbjct: 231 AMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIR 290
Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
GFC AGR +D L + M + ++VA+SAL+D + G + A EL EM + G
Sbjct: 291 GFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRG--I 348
Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
SP+ VTYTS+I FC + + +A +LD M + GC PN T + LI G+C +D+ +
Sbjct: 349 SPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLE 408
Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
L K+ G V+ Y++L+ +L+ A++LF +M++ V+PD ++ +++ LC
Sbjct: 409 LFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLC 468
Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435
G+ + ++E IEK +D I+++++ G+C + +A L
Sbjct: 469 DNGEPEKALEIFEKIEKSKM--ELDIGIYNIIIHGMCNASKVDDAWDL 514
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 197/406 (48%), Gaps = 27/406 (6%)
Query: 40 QKNP-NNIEKTLATVKAKLDSTCVIEVLHRC----FPSQSQMGIRFFIWAALQSSYRHSS 94
+NP +++E TL ++ S V +VL RC FP+ RFF+WA + HS
Sbjct: 48 HRNPKDDLEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAH-----RFFLWARRIPDFAHSL 102
Query: 95 FMYNRACEMSRIKQNPSIIID-VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
Y+ E+ + +++ D ++EA + +S K+ ++F +A L +EA
Sbjct: 103 ESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFN 162
Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM---KGMGLIDLYPDIITYVSMIKGFC 210
+M EF ++P + ++ C+K + A E KG G++ P TY +++G+
Sbjct: 163 RMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIV---PSAKTYSILVRGW- 218
Query: 211 NAGRLEDACG---LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
R+ DA G +F M C +L+AY+ALLD +C+ G ++ ++ EM G
Sbjct: 219 --ARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLG--L 274
Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
P+ ++ I +C G + A +LDRM+ PN T + +IK C +D+AY
Sbjct: 275 KPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYL 334
Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
L+D+++ G+ Y+S++ + A KL S+M + PD +++++ L
Sbjct: 335 LLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLI 394
Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
G+ ++E + + F +V + ++V++ GL RK +E A
Sbjct: 395 RIGRFDRATEIWEGMSERKFYPTVAT--YTVMIHGLVRKKGKLEEA 438
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580 OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 167/316 (52%), Gaps = 9/316 (2%)
Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMK 188
V + ++ C+ R EA+ ++ M F P+ +IYN VI C+ D+ A E+
Sbjct: 150 VTLGSLLNGFCQGNRF-QEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFY 208
Query: 189 GMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248
M + D +TY ++I G N+GR DA L + M + N++ ++AL+D + G
Sbjct: 209 CMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEG 268
Query: 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308
++ A L EM + PNV TY S+I FC G + +A + D M + GC P+ VT
Sbjct: 269 NLLEARNLYKEMIRRS--VVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVT 326
Query: 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368
+TLI GFC +++ +L ++ G V Y++L+ + +L A+K+F++M+
Sbjct: 327 YNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMV 386
Query: 369 ASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRK 426
GV PD + ++++ LC G++ + + ED++K S +D DI +++++ GLCR
Sbjct: 387 DCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQK----SEMDVDIITYNIIIQGLCRT 442
Query: 427 NHSVEAAKLARFMLKK 442
+ EA L R + +K
Sbjct: 443 DKLKEAWCLFRSLTRK 458
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| 359474405 | 638 | PREDICTED: pentatricopeptide repeat-cont | 0.970 | 0.722 | 0.644 | 1e-175 | |
| 296084709 | 528 | unnamed protein product [Vitis vinifera] | 0.970 | 0.873 | 0.644 | 1e-175 | |
| 255581311 | 518 | pentatricopeptide repeat-containing prot | 0.987 | 0.905 | 0.617 | 1e-173 | |
| 224137884 | 476 | predicted protein [Populus trichocarpa] | 0.989 | 0.987 | 0.581 | 1e-159 | |
| 449442465 | 475 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.995 | 0.568 | 1e-153 | |
| 297790927 | 477 | pentatricopeptide repeat-containing prot | 0.976 | 0.972 | 0.544 | 1e-140 | |
| 357469235 | 449 | Pentatricopeptide repeat-containing prot | 0.915 | 0.968 | 0.544 | 1e-138 | |
| 15238076 | 477 | pentatricopeptide repeat-containing prot | 0.983 | 0.979 | 0.536 | 1e-138 | |
| 147792816 | 577 | hypothetical protein VITISV_001082 [Viti | 0.749 | 0.616 | 0.629 | 1e-131 | |
| 356523566 | 475 | PREDICTED: pentatricopeptide repeat-cont | 0.957 | 0.957 | 0.512 | 1e-130 |
| >gi|359474405|ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 301/467 (64%), Positives = 377/467 (80%), Gaps = 6/467 (1%)
Query: 5 SLSRILSSSVNIKNSKIFALHFTTA-SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVI 63
S+SR+L S+ KN +F+TA S AE++YTHLQK +NIEKTL V+AKLDS+CV
Sbjct: 5 SVSRLLPYSIRHKNP-----NFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVN 59
Query: 64 EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE 123
EVL+RC +QSQ+G+RFFIWA +QS YRHSS++Y++ACE+ RI QNP IIDV+EAY+ E
Sbjct: 60 EVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVE 119
Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
G VVSVK V+ +L +A+LA+EA+W+L+KM EF++R DT+ YN+VIRLFCEKGDM A
Sbjct: 120 GTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLA 179
Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
LMK MGLIDLYP++ITYV+MIKGFCN GRLEDAC LFKVMK HGC+ N+V Y+ +LDG
Sbjct: 180 AGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDG 239
Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
+CR GS+ERALELLGEMEKE GDCSPNVVTYTS+IQ C KG + EAL ILDRM A GCA
Sbjct: 240 VCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCA 299
Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
PNRVT+S L+KGFC EG ++EA++LIDKVVAGG+VS G CYSSL+V LV K L+EAEKL
Sbjct: 300 PNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKL 359
Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
F +MLA+ VKPDGLAC +I+ LCL G+VL+GF L+++ E + LS +DSDI+S+LL+GL
Sbjct: 360 FRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLDSDIYSILLVGL 419
Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
+K HSVEA KLAR M+ + I L+ PY D IVEHLK+SGD+E++ L
Sbjct: 420 SQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEIVMYL 466
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084709|emb|CBI25851.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 301/467 (64%), Positives = 377/467 (80%), Gaps = 6/467 (1%)
Query: 5 SLSRILSSSVNIKNSKIFALHFTTA-SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVI 63
S+SR+L S+ KN +F+TA S AE++YTHLQK +NIEKTL V+AKLDS+CV
Sbjct: 11 SVSRLLPYSIRHKNP-----NFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVN 65
Query: 64 EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE 123
EVL+RC +QSQ+G+RFFIWA +QS YRHSS++Y++ACE+ RI QNP IIDV+EAY+ E
Sbjct: 66 EVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVE 125
Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
G VVSVK V+ +L +A+LA+EA+W+L+KM EF++R DT+ YN+VIRLFCEKGDM A
Sbjct: 126 GTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLA 185
Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
LMK MGLIDLYP++ITYV+MIKGFCN GRLEDAC LFKVMK HGC+ N+V Y+ +LDG
Sbjct: 186 AGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDG 245
Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
+CR GS+ERALELLGEMEKE GDCSPNVVTYTS+IQ C KG + EAL ILDRM A GCA
Sbjct: 246 VCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCA 305
Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
PNRVT+S L+KGFC EG ++EA++LIDKVVAGG+VS G CYSSL+V LV K L+EAEKL
Sbjct: 306 PNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKL 365
Query: 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423
F +MLA+ VKPDGLAC +I+ LCL G+VL+GF L+++ E + LS +DSDI+S+LL+GL
Sbjct: 366 FRRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLDSDIYSILLVGL 425
Query: 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
+K HSVEA KLAR M+ + I L+ PY D IVEHLK+SGD+E+ T+
Sbjct: 426 SQKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEICTHF 472
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581311|ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223528920|gb|EEF30916.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 290/470 (61%), Positives = 375/470 (79%), Gaps = 1/470 (0%)
Query: 5 SLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIE 64
SL R LS S+ K SKI LHFTT S A++ YTHLQ NPNN+EK+L ++K KLD+ CV E
Sbjct: 5 SLPRFLSLSIAPKTSKISTLHFTT-SLADKLYTHLQNNPNNVEKSLNSIKPKLDTRCVTE 63
Query: 65 VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEG 124
VLH+C + SQ+G+RFF+WA QS+YRHSSF+Y++AC++ IKQNP ++D+ E Y+ E
Sbjct: 64 VLHKCSLNNSQIGLRFFVWAGYQSNYRHSSFLYSKACKLFNIKQNPQAVLDLFEFYRAEK 123
Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
CVV++K KV+ NLC++ LANEA VLRKM EFD++ DT Y VIRLFC+KGDM A
Sbjct: 124 CVVNLKTFKVVLNLCKEGTLANEAFLVLRKMQEFDIQADTKAYTIVIRLFCDKGDMDMAQ 183
Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
+LM M DLYPD++TYVS+IKGFC+ GRLE+AC L K M+ HGC N+V YS L+DGI
Sbjct: 184 KLMGEMSFNDLYPDMVTYVSIIKGFCDIGRLEEACRLVKEMRAHGCVPNVVVYSTLVDGI 243
Query: 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304
CR GS+ERALELLG MEKEGGDC+PNV+TYTSVIQ C KG +A +LDRMEA GCAP
Sbjct: 244 CRFGSVERALELLGGMEKEGGDCNPNVLTYTSVIQGLCEKGRTMDAFAVLDRMEACGCAP 303
Query: 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364
NRVT+STL+K C++G+L+EAY+LID+VVAGGSVSS CYS +VV L+R K+++EAEKLF
Sbjct: 304 NRVTVSTLLKRLCMDGHLEEAYKLIDRVVAGGSVSSCDCYSPIVVCLIRIKKVEEAEKLF 363
Query: 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
+ + SGVKPDGLACS+MI+ELC +VL+G+CL+++IEKIG LS++DSD +SVLL+GLC
Sbjct: 364 RRAVVSGVKPDGLACSLMIKELCFVNRVLDGYCLHDEIEKIGSLSTIDSDTYSVLLVGLC 423
Query: 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474
++ +S+EAAKLAR +++KRI L+ PYVDK+VE++KK G +L+T L IG
Sbjct: 424 QQGYSLEAAKLARSLIEKRIHLKHPYVDKVVEYMKKFGVTDLVTELASIG 473
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224137884|ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|222833786|gb|EEE72263.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 274/471 (58%), Positives = 350/471 (74%), Gaps = 1/471 (0%)
Query: 1 MPRFSLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKA-KLDS 59
M FSL+R + S+ K KI LHF T S E+ HLQ +PNN+EKTL ++ KLD+
Sbjct: 1 MSLFSLTRHFTFSIKPKTPKISTLHFATTSLGEKLDAHLQNSPNNVEKTLNSLAPIKLDT 60
Query: 60 TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
V +++HR + Q+G+RFFIWA Q +YRH+ ++YN+AC + +IKQNP +I+D++E
Sbjct: 61 KYVNDIIHRWSLNNLQLGLRFFIWAGDQPNYRHNLYIYNKACSLFKIKQNPQVILDLIET 120
Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
YK E CVV V KV+ LC+ LA+EA+ VL+KMPEF++RPDT YN VIR CEKGD
Sbjct: 121 YKLEKCVVCVDTFKVVLRLCKAGGLADEALMVLKKMPEFNIRPDTTAYNVVIRSLCEKGD 180
Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
+ A +LM MGLIDLYPD+ITYVSMIKGFC+ GRLE+A LF VM HGC N+VAYSA
Sbjct: 181 VDMAKKLMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSA 240
Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
LLDGICR G +ERA ELL EMEK+G C PNV+TYTSVIQ FC +G K+AL +L+ ME
Sbjct: 241 LLDGICRFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQGRTKDALSVLELMEV 300
Query: 300 LGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKE 359
GCAPNRVT S I G C G L + Y I+++VAGGSVS G CYSSLVV L++ K+++E
Sbjct: 301 RGCAPNRVTASAWINGICTNGQLQDVYNFIERIVAGGSVSIGDCYSSLVVCLIKIKKVEE 360
Query: 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419
AEK F + L+SG+KPD LACS+MIRE+C +VL+GFCLYE++EK G LSS+D DI+S+L
Sbjct: 361 AEKTFRRALSSGMKPDSLACSMMIREICSEKRVLDGFCLYEEVEKTGCLSSIDIDIYSIL 420
Query: 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
L GLC++ HS EAA+LAR ML+KRI L+ P+V+KIVEHLK G +EL+ L
Sbjct: 421 LAGLCQQGHSAEAARLARSMLEKRIPLRAPHVEKIVEHLKNFGGKELVAEL 471
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442465|ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Cucumis sativus] gi|449505643|ref|XP_004162530.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 269/473 (56%), Positives = 354/473 (74%)
Query: 1 MPRFSLSRILSSSVNIKNSKIFALHFTTASPAERFYTHLQKNPNNIEKTLATVKAKLDST 60
M F +S SSS + S + H T S ++ FY HL+K+ N++KTLAT+K KLDS
Sbjct: 1 MALFRISCPRSSSFLLNISTLSTFHLNTLSSSDLFYDHLEKSNGNLDKTLATLKTKLDSR 60
Query: 61 CVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAY 120
CV EVL++C SQMG+RFFIWA Q +YRHSSFMY+RACE+ I +P ++ +V+E Y
Sbjct: 61 CVNEVLYKCSFELSQMGLRFFIWAGRQPNYRHSSFMYSRACELIGINVSPCLLFNVIEDY 120
Query: 121 KEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180
+ EGC+V ++M K+I NLC++A+LA EA+ +LRKM EF LR DT +YN VIRLF EKG+M
Sbjct: 121 RREGCLVDIRMFKIILNLCKEAKLAKEALSILRKMSEFHLRADTTMYNLVIRLFTEKGEM 180
Query: 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240
A ELMK M +D++P++ITY+SM+KGFC+ GR EDA GLFK MK +GCA N V YS L
Sbjct: 181 DKAMELMKEMDSVDIHPNMITYISMLKGFCDVGRWEDAYGLFKDMKENGCAPNTVVYSVL 240
Query: 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300
++G RL M+R +E+L EMEK+GG CSPN VTYTS+IQ C +G EAL +LDRME
Sbjct: 241 VNGAIRLRIMDRLMEMLKEMEKQGGTCSPNTVTYTSIIQSLCEEGHPLEALKVLDRMEEY 300
Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
G APNRV +S L+K FC +G+++EAY+LID+VVA G VS G CYSSLVV LV+ K++ EA
Sbjct: 301 GYAPNRVAVSFLVKEFCKDGHVEEAYKLIDRVVARGGVSYGDCYSSLVVTLVKMKKIAEA 360
Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
EKLF MLA+GVKPDG+ACS+MIRELCL +VL+GF L ++++ G+L S+D+DI+S+LL
Sbjct: 361 EKLFRNMLANGVKPDGVACSLMIRELCLEERVLDGFNLCYEVDRNGYLCSIDADIYSLLL 420
Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473
+GLC +HSV+AAKLAR MLKK I L+ Y + I++HLKK D EL+ +L I
Sbjct: 421 VGLCEHDHSVDAAKLARLMLKKGIRLKPHYAESIIKHLKKFEDRELVMHLGGI 473
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297790927|ref|XP_002863348.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297309183|gb|EFH39607.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/470 (54%), Positives = 337/470 (71%), Gaps = 6/470 (1%)
Query: 6 LSRILSSSVNIKNSKIFALHF-TTASPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIE 64
+SR+L S+ SKI AL F TT S A+R Y HLQ +N EK LA+ LDS+ + E
Sbjct: 6 ISRLLPPSLLSHPSKISALRFSTTVSAADRLYGHLQGGTSNPEKDLASANVNLDSSSINE 65
Query: 65 VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEG 124
V+ RC P+Q Q+G+RFFIWA QSS+RHS +MY +AC+ +I+ NP +I DVVEAYK+E
Sbjct: 66 VIRRCDPNQFQLGLRFFIWAGTQSSHRHSPYMYTKACDFLKIRANPDLIKDVVEAYKKEE 125
Query: 125 CVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184
C VSVK M ++ LC +A+LA+EA+WVLRK PEFDL DT+ YN VIRLF +KGD+ AD
Sbjct: 126 CFVSVKTMWIVLTLCNQAKLADEALWVLRKFPEFDLCADTVAYNLVIRLFADKGDLSMAD 185
Query: 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244
LMK M +DLYPD+ITY +MI G+CNAG++++A L K M +H C N V YS +L+G+
Sbjct: 186 MLMKEMDCVDLYPDVITYTAMINGYCNAGKIDEAWKLAKEMSKHDCVLNTVTYSRILEGV 245
Query: 245 CRLGSMERALELLGEMEKE--GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
C+ G ME ALELL EMEKE GG SPN VTYT VIQ FC K ++EAL +LDRM GC
Sbjct: 246 CKSGDMETALELLAEMEKEDGGGLISPNAVTYTLVIQSFCEKKRIREALLVLDRMGDRGC 305
Query: 303 APNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360
PNRVT S LI+G +E + D + +LIDK+V G VS C+SS V L+R KR +EA
Sbjct: 306 TPNRVTASVLIQGV-LENDEDVKDLSKLIDKLVKLGGVSLSECFSSATVSLIRMKRWEEA 364
Query: 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420
EK+F ML G++PDGLAC+ + RELCL + L+ F LY++IEK S++DSDI++VLL
Sbjct: 365 EKIFRLMLVRGIRPDGLACTHVFRELCLSERYLDCFVLYQEIEKEDVKSTMDSDIYAVLL 424
Query: 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470
LGLC++ +S EAAKLA+ ML K++ L+ +V+KI+E LKK+GDE+L++
Sbjct: 425 LGLCQQGNSWEAAKLAKSMLDKKMRLKVSHVEKIIEALKKTGDEDLMSRF 474
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357469235|ref|XP_003604902.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355505957|gb|AES87099.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 238/437 (54%), Positives = 325/437 (74%), Gaps = 2/437 (0%)
Query: 29 ASPAERFYTHLQK-NPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQ 87
+S A+ YTHL K N IE L+ K KLDS CVI+VL++CFP QSQ+G+RFFIWA Q
Sbjct: 4 SSIADTLYTHLNKTNGITIENALSKTKPKLDSQCVIQVLNKCFPKQSQLGVRFFIWAGFQ 63
Query: 88 SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANE 147
S YRHS +MY + C + I +NP II DV++AY+ +GCVV+V M + + LC++A +
Sbjct: 64 SGYRHSGYMYRKVCNLFEIDKNPEIICDVIKAYEVDGCVVNVNMFREVLKLCKEAENVDL 123
Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
+WVLRKM +F+++PDT++YN VI+L C++GD+ ++LMK M L + PD+ITY++MI+
Sbjct: 124 GLWVLRKMEDFEMKPDTVMYNVVIKLVCKQGDVEMGEKLMKDMSLNGICPDLITYMTMIE 183
Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
G C+AGRLE+A + KVM+ +GC+ N V SA+LDG+CRL SMERALELL EMEK GDC
Sbjct: 184 GLCSAGRLEEAYEMVKVMRGNGCSPNSVVLSAVLDGLCRLDSMERALELLDEMEK-SGDC 242
Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
PNVVTYTS+IQ FC +G EAL ILDRM A GC N VT+ TLI+ C EG +DEAY+
Sbjct: 243 CPNVVTYTSLIQSFCKRGEWTEALNILDRMRAFGCFANHVTVFTLIESLCTEGRVDEAYK 302
Query: 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
++DK+V VS G CY+SLV+ +R K+L+ AE LF +MLA+ +KPD LA S++++ELC
Sbjct: 303 VVDKLVVEHCVSRGDCYNSLVISFIRVKKLEGAENLFKEMLAAEIKPDTLASSLLLKELC 362
Query: 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447
L +VL+GF L + IE +GFLSS+DSDI+S++L+GL +KNH EA KLA+ MLKK I L+
Sbjct: 363 LKDRVLDGFYLLDTIENMGFLSSIDSDIYSIMLIGLWQKNHLTEATKLAKIMLKKAIPLR 422
Query: 448 GPYVDKIVEHLKKSGDE 464
PY D+ ++ L+K G++
Sbjct: 423 PPYKDRAIDILRKYGEK 439
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238076|ref|NP_199547.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75180684|sp|Q9LVS3.1|PP422_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g47360 gi|8809619|dbj|BAA97170.1| unnamed protein product [Arabidopsis thaliana] gi|332008119|gb|AED95502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 497 bits (1279), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/473 (53%), Positives = 339/473 (71%), Gaps = 6/473 (1%)
Query: 1 MPRFSLSRILSSSVNIKNSKIFALHF-TTASPAERFYTHLQKNPNNIEKTLATVKAKLDS 59
MP +SR++S S+ + SKI AL F TT S AER Y LQ +N+EK LA+ +LDS
Sbjct: 1 MPNSLISRLVSPSLRSQPSKISALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDS 60
Query: 60 TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
+C+ EVL RC P+Q Q G+RFFIWA SS+RHS++MY +AC++ +I+ P +I V+E+
Sbjct: 61 SCINEVLRRCDPNQFQSGLRFFIWAGTLSSHRHSAYMYTKACDILKIRAKPDLIKYVIES 120
Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
Y++E C V+VK M+++ LC +A LA+EA+WVLRK PEF++ DT+ YN VIRLF +KGD
Sbjct: 121 YRKEECFVNVKTMRIVLTLCNQANLADEALWVLRKFPEFNVCADTVAYNLVIRLFADKGD 180
Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
+ AD L+K M + LYPD+ITY SMI G+CNAG+++DA L K M +H C N V YS
Sbjct: 181 LNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSR 240
Query: 240 LLDGICRLGSMERALELLGEMEKE--GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
+L+G+C+ G MERALELL EMEKE GG SPN VTYT VIQ FC K ++EAL +LDRM
Sbjct: 241 ILEGVCKSGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRM 300
Query: 298 EALGCAPNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355
GC PNRVT LI+G +E + D +LIDK+V G VS C+SS V L+R K
Sbjct: 301 GNRGCMPNRVTACVLIQGV-LENDEDVKALSKLIDKLVKLGGVSLSECFSSATVSLIRMK 359
Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
R +EAEK+F ML GV+PDGLACS + RELCL + L+ F LY++IEK S++DSDI
Sbjct: 360 RWEEAEKIFRLMLVRGVRPDGLACSHVFRELCLLERYLDCFLLYQEIEKKDVKSTIDSDI 419
Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
H+VLLLGLC++ +S EAAKLA+ ML K++ L+ +V+KI+E LKK+GDE+L++
Sbjct: 420 HAVLLLGLCQQGNSWEAAKLAKSMLDKKMRLKVSHVEKIIEALKKTGDEDLMS 472
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147792816|emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/370 (62%), Positives = 290/370 (78%), Gaps = 14/370 (3%)
Query: 5 SLSRILSSSVNIKNSKIFALHFTTA-SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVI 63
S+SR+L S+ KN +F+TA SPAE++YTHLQK +NIEKTL V+AKLDS+CV
Sbjct: 5 SVSRLLPYSIRHKNP-----NFSTALSPAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVN 59
Query: 64 EVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE 123
EVL+RC +QSQ+G+RFFIWA +QS YRHSS++Y++ACE+ RI QNP IIDV+EAY+ E
Sbjct: 60 EVLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVE 119
Query: 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAA 183
G VVSVK V+ +L +A+LA+EA+W+L+KM EF++R DT+ YN+VIRLFCEKGDM A
Sbjct: 120 GTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLA 179
Query: 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243
LMK MGLIDLYP++ITYV+MIKGFCN GRLEDAC LFKVMK HGC+ N+V Y+ +LDG
Sbjct: 180 AGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDG 239
Query: 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303
+CR GS+ERALELLGEMEKE GDCSPNVVTYTS+IQ C KG + EAL ILDRM A GCA
Sbjct: 240 VCRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCA 299
Query: 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363
PNRVT+S L+KGFC EG ++EA++LIDKVVAGG+VS G L + + EA KL
Sbjct: 300 PNRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYVG--------LSQKRHSVEAVKL 351
Query: 364 FSKMLASGVK 373
M+ G++
Sbjct: 352 ARLMVDRGIQ 361
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356523566|ref|XP_003530408.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/466 (51%), Positives = 328/466 (70%), Gaps = 11/466 (2%)
Query: 18 NSKIFALHFTTASPAERFYT-------HLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCF 70
N ++F T + A F T HL ++ ++E +L+ VK KLDS +I+VL+ C
Sbjct: 6 NFQLFLPFHTLKTKALPFSTLIDVLCSHLHQSNGSVEHSLSKVKPKLDSQSIIQVLNTCR 65
Query: 71 --PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS 128
P Q Q+G+RFF+WA QS YRHSS+MY +A + RI NP II DV+E+Y+ EG +V+
Sbjct: 66 DRPYQPQLGVRFFVWAGFQSGYRHSSYMYTKASYLLRIHHNPQIIRDVIESYEAEGSLVT 125
Query: 129 VKMMKVIFNLCEKARLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELM 187
V M + + LC++A+LA+ A+WVLRKM + F+L DT++YN VIRL C+KGD+ A +L
Sbjct: 126 VNMFREVLKLCKEAQLADMALWVLRKMEDTFNLHADTVMYNLVIRLCCKKGDIETALKLT 185
Query: 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247
M L PD+ITY+++++GF NAGR E+A + KVM+ HGC+ NLV SA+LDG CR
Sbjct: 186 SEMSSNGLCPDLITYMAIVEGFSNAGRSEEAYSVLKVMRLHGCSPNLVILSAILDGFCRS 245
Query: 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307
GSMERALELL EMEK GG C+PNVVTYTSVIQ FC +G KEAL ILDRM+A GC N V
Sbjct: 246 GSMERALELLDEMEK-GGVCTPNVVTYTSVIQSFCKRGQWKEALDILDRMKAFGCHANHV 304
Query: 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
T+ TL++ C +G++++ Y L DK V VS G YSSLV+ L+R K+L+EAEKLF +M
Sbjct: 305 TVFTLVESLCADGHVEQGYGLFDKFVVEHCVSYGDFYSSLVISLIRIKKLEEAEKLFKEM 364
Query: 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427
LA V+ D LA S++++ELC+ ++L+GF L E IE G LSS+DSDI+S+LL+GLC+++
Sbjct: 365 LAGDVRLDTLASSLLLKELCMKDRILDGFYLLEAIENKGCLSSIDSDIYSILLIGLCQRS 424
Query: 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473
H EA KLA+ MLKK + LQ P+ D ++ L KSG+++L+ L I
Sbjct: 425 HLKEATKLAKIMLKKSVLLQPPHKDAAIDILIKSGEKDLVNQLTGI 470
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| TAIR|locus:2171474 | 477 | AT5G47360 [Arabidopsis thalian | 0.983 | 0.979 | 0.498 | 3.8e-117 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.928 | 0.691 | 0.259 | 1.9e-35 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.890 | 0.664 | 0.261 | 4e-33 | |
| TAIR|locus:2012883 | 537 | AT1G20300 [Arabidopsis thalian | 0.848 | 0.750 | 0.229 | 2.9e-32 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.844 | 0.760 | 0.260 | 3.2e-32 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.747 | 0.573 | 0.260 | 3.4e-32 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.675 | 0.498 | 0.267 | 6.7e-32 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.675 | 0.516 | 0.279 | 1.6e-31 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.562 | 0.291 | 0.305 | 2.7e-31 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.701 | 0.528 | 0.259 | 2.8e-31 |
| TAIR|locus:2171474 AT5G47360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
Identities = 236/473 (49%), Positives = 320/473 (67%)
Query: 1 MPRFSLSRILSSSVNIKNSKIFALHF-TTASPAERFYTHLQKNPNNIEKTLATVKAKLDS 59
MP +SR++S S+ + SKI AL F TT S AER Y LQ +N+EK LA+ +LDS
Sbjct: 1 MPNSLISRLVSPSLRSQPSKISALRFLTTVSAAERLYGQLQGCTSNLEKELASANVQLDS 60
Query: 60 TCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEA 119
+C+ EVL RC P+Q Q G+RFFIWA SS+RHS++MY +AC++ +I+ P +I V+E+
Sbjct: 61 SCINEVLRRCDPNQFQSGLRFFIWAGTLSSHRHSAYMYTKACDILKIRAKPDLIKYVIES 120
Query: 120 YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179
Y++E C V+VK M+++ LC +A LA+EA+WVLRK PEF++ DT+ YN VIRLF +KGD
Sbjct: 121 YRKEECFVNVKTMRIVLTLCNQANLADEALWVLRKFPEFNVCADTVAYNLVIRLFADKGD 180
Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
+ AD L+K M + LYPD+ITY SMI G+CNAG+++DA L K M +H C N V YS
Sbjct: 181 LNIADMLIKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSR 240
Query: 240 LLDGICRLGSMERAXXXXXXXXXXXXD--CSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297
+L+G+C+ G MERA SPN VTYT VIQ FC K ++EAL +LDRM
Sbjct: 241 ILEGVCKSGDMERALELLAEMEKEDGGGLISPNAVTYTLVIQAFCEKRRVEEALLVLDRM 300
Query: 298 EALGCAPNRVTISTLIKGFCVEGNLD-EAY-QLIDKXXXXXXXXXXXXXXXXXXELVRTK 355
GC PNRVT LI+G +E + D +A +LIDK L+R K
Sbjct: 301 GNRGCMPNRVTACVLIQGV-LENDEDVKALSKLIDKLVKLGGVSLSECFSSATVSLIRMK 359
Query: 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415
R +EAEK+F ML GV+PDGLACS + RELCL + L+ F LY++IEK S++DSDI
Sbjct: 360 RWEEAEKIFRLMLVRGVRPDGLACSHVFRELCLLERYLDCFLLYQEIEKKDVKSTIDSDI 419
Query: 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468
H+VLLLGLC++ +S EAAKLA+ ML K++ L+ +V+KI+E LKK+GDE+L++
Sbjct: 420 HAVLLLGLCQQGNSWEAAKLAKSMLDKKMRLKVSHVEKIIEALKKTGDEDLMS 472
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 388 (141.6 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 120/462 (25%), Positives = 210/462 (45%)
Query: 3 RFSLSRILSS----SVNIKNSKIFAL---HFTT-ASPAERFYTHLQKNPNNIEKT-LATV 53
RF +SR+L++ S KN H A E+ Y L+ + + + K LA
Sbjct: 30 RFHISRVLNNDFVESTERKNGVGLVCPEKHEDEFAGEVEKIYRILRNHHSRVPKLELALN 89
Query: 54 KAKLDST--CVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHS-SFMYNRACEMSRIKQNP 110
++ +D +I VL RC + +G RFF+WA Q Y HS + +S+++Q
Sbjct: 90 ESGIDLRPGLIIRVLSRCGDA-GNLGYRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFG 148
Query: 111 SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170
++ + E K ++ ++ V+ A + +A+ VL +MP++ L PD ++ +
Sbjct: 149 AVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKKAVEVLDEMPKYGLEPDEYVFGCL 208
Query: 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITY-VSMIKGFCNAGRLEDACGLFKVMKRHG 229
+ C+ G + A ++ + M + +P + Y S++ G+C G+L +A + MK G
Sbjct: 209 LDALCKNGSVKEASKVFEDMR--EKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAG 266
Query: 230 CAANLVAYSALLDGICRLGSMERAXXXXXXXXXXXXDCSPNVVTYTSVIQIFCG-KGMMK 288
++V ++ LL G G M A + PNV YT +IQ C + M
Sbjct: 267 LEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFE--PNVNCYTVLIQALCRTEKRMD 324
Query: 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKXXXXXXXXXXXXXXXXX 348
EA+ + ME GC + VT + LI GFC G +D+ Y ++D
Sbjct: 325 EAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIM 384
Query: 349 XELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408
+ ++ +E +L KM G PD L +V+IR C G+V E L+ ++E G
Sbjct: 385 VAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKLGEVKEAVRLWNEMEANGLS 444
Query: 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450
VD+ + +++ G + +EA + M+ + I+ Y
Sbjct: 445 PGVDTFV--IMINGFTSQGFLIEACNHFKEMVSRGIFSAPQY 484
|
|
| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 367 (134.2 bits), Expect = 4.0e-33, P = 4.0e-33
Identities = 115/439 (26%), Positives = 205/439 (46%)
Query: 17 KNSKIFALHFTTASPAERFYTHLQKNPNNIEKT-LATVKAKLD-STCVIE-VLHRCFPSQ 73
KNSK + AS E+ Y L+K + + K LA ++ ++ +IE VL+RC +
Sbjct: 72 KNSK----YDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDA- 126
Query: 74 SQMGIRFFIWAALQSSYRHSSFMYNRACE-MSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132
+G RFF+WAA Q Y HS +Y + +S+++Q ++ + E KE ++ ++
Sbjct: 127 GNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELF 186
Query: 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192
V+ A + +A+ VL +MP+F PD ++ ++ C+ G + A +L + M +
Sbjct: 187 VVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRM 246
Query: 193 IDLYPDIITY-VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSME 251
+P + Y S++ G+C G++ +A + M G ++V Y+ LL G G M
Sbjct: 247 --RFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMA 304
Query: 252 RAXXXXXXXXXXXXDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311
A + PN YT +IQ C M+EA+ + ME C + VT +
Sbjct: 305 DAYDLLRDMRRRGFE--PNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTA 362
Query: 312 LIKGFCVEGNLDEAYQLIDKXXXXXXXXXXXXXXXXXXELVRTKRLKEAEKLFSKMLASG 371
L+ GFC G +D+ Y ++D + + +E +L KM
Sbjct: 363 LVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIE 422
Query: 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431
PD +V+IR C G+V E L+ ++E+ G VD+ + +++ GL + +E
Sbjct: 423 YHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFV--IMINGLASQGCLLE 480
Query: 432 AAKLARFMLKKRIWLQGPY 450
A+ + M+ + ++ Y
Sbjct: 481 ASDHFKEMVTRGLFSVSQY 499
|
|
| TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 98/427 (22%), Positives = 206/427 (48%)
Query: 61 CVIE----VLHRCFPSQSQMGIRFFIWAALQSSYRHSS-FMYNRACEMS-RIKQNPSIII 114
CVIE V H QS + FF WA + Y H S YN ++S +++Q +
Sbjct: 116 CVIEKCGSVRHGIPLHQS---LAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQF-DLAW 171
Query: 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174
+++ K +S++ ++ +A LA+EA+ +M ++ PD I ++ VI
Sbjct: 172 HLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVISNL 231
Query: 175 CEKGDMIAADELMKGMGLIDLY-PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
K A L D + PD+I Y ++++G+C AG + +A +FK MK G N
Sbjct: 232 SRKRRASEAQSFFDS--LKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPN 289
Query: 234 LVAYSALLDGICRLGSMERAXXXXXXXXXXXXDCSPNVVTYTSVIQIFCGKGMMKEALGI 293
+ YS ++D +CR G + RA C+PN +T+ +++++ G ++ L +
Sbjct: 290 VYTYSIVIDALCRCGQISRAHDVFADMLDSG--CAPNAITFNNLMRVHVKAGRTEKVLQV 347
Query: 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKXXXXXXXXXXXXXXXXXXELVR 353
++M+ LGC P+ +T + LI+ C + NL+ A ++++ + +
Sbjct: 348 YNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEK 407
Query: 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC-LYEDIEKIGFLSSVD 412
+ + A +++SKM+ + +P+ + ++++R + +G + + + ++++ +V+
Sbjct: 408 KRDVNGAHRMYSKMMEAKCEPNTVTYNILMR-MFVGSKSTDMVLKMKKEMDDKEVEPNVN 466
Query: 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG-PYVDKIVEHLKKSGD----EELI 467
+ + +L+ C H A KL + M++++ + ++ L+++G EEL+
Sbjct: 467 T--YRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELV 524
Query: 468 TNLPKIG 474
+ + G
Sbjct: 525 EKMIQKG 531
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 354 (129.7 bits), Expect = 3.2e-32, P = 3.2e-32
Identities = 111/426 (26%), Positives = 199/426 (46%)
Query: 24 LHFTTASPAERFYTHLQKN---PNNIEKT-LATVKAKLDSTCVIEVLHRCFPSQSQMGIR 79
LH + A +TH+ ++ P+ I+ T L V AK+ V V++ C Q MG+
Sbjct: 48 LHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDV--VINLCDHLQI-MGVS 104
Query: 80 FFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLC 139
++ + + N C+ S+ S + +++ E V ++ C
Sbjct: 105 HDLYTC--------NLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLIN---GFC 153
Query: 140 EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199
R+ EAM ++ +M E ++PD ++Y +I C+ G + A L M + PD+
Sbjct: 154 LGNRM-EEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDV 212
Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAXXXXXX 259
+ Y S++ G CN+GR DA L + M + +++ ++AL+D + G A
Sbjct: 213 VMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNE 272
Query: 260 XXXXXXDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319
+PN+ TYTS+I FC +G + EA + ME GC P+ V ++LI GFC
Sbjct: 273 MIRMSI--APNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKC 330
Query: 320 GNLDEAYQLIDKXXXXXXXXXXXXXXXXXXELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379
+D+A ++ + + + A+++FS M++ GV P+
Sbjct: 331 KKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTY 390
Query: 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI--HSVLLLGLCRKNHSVEAAKLAR 437
+V++ LC G+V + ++ED++K + V +I ++VLL GLC N +E A +
Sbjct: 391 NVLLHCLCYNGKVKKALMIFEDMQKRE-MDGVAPNIWTYNVLLHGLCY-NGKLEKALMVF 448
Query: 438 FMLKKR 443
++KR
Sbjct: 449 EDMRKR 454
|
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| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 358 (131.1 bits), Expect = 3.4e-32, P = 3.4e-32
Identities = 95/364 (26%), Positives = 177/364 (48%)
Query: 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLR 153
S + N C R+ + +++ +VE K+ +V+V + I LC K R++ EA+ ++
Sbjct: 144 STLVNGFCLEGRVSEAVALVDRMVEM-KQRPDLVTVSTL--INGLCLKGRVS-EALVLID 199
Query: 154 KMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213
+M E+ +PD + Y V+ C+ G+ A +L + M ++ ++ Y +I C G
Sbjct: 200 RMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDG 259
Query: 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAXXXXXXXXXXXXDCSPNVVT 273
+DA LF M+ G A++V YS+L+ G+C G + + P+VVT
Sbjct: 260 SFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGR--NIIPDVVT 317
Query: 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKXX 333
++++I +F +G + EA + + M G AP+ +T ++LI GFC E L EA Q+ D
Sbjct: 318 FSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMV 377
Query: 334 XXXXXXXXXXXXXXXXELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393
+ KR+ + +LF ++ + G+ P+ + + ++ C G++
Sbjct: 378 SKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLN 437
Query: 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453
L++++ G SV + + +LL GLC +A ++ M K R+ L G +
Sbjct: 438 AAKELFQEMVSRGVPPSVVT--YGILLDGLCDNGELNKALEIFEKMQKSRMTL-GIGIYN 494
Query: 454 IVEH 457
I+ H
Sbjct: 495 IIIH 498
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| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 6.7e-32, P = 6.7e-32
Identities = 88/329 (26%), Positives = 163/329 (49%)
Query: 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
+ N C ++ +I +VE + V ++ V +C+ + A AM +LRKM
Sbjct: 199 LVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNV---MCKSGQTAL-AMELLRKM 254
Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
E +++ D + Y+ +I C+ G + A L M + DIITY ++I GFCNAGR
Sbjct: 255 EERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRW 314
Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAXXXXXXXXXXXXDCSPNVVTYT 275
+D L + M + + N+V +S L+D + G + A +PN +TY
Sbjct: 315 DDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGI--APNTITYN 372
Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKXXXX 335
S+I FC + ++EA+ ++D M + GC P+ +T + LI G+C +D+ +L +
Sbjct: 373 SLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLR 432
Query: 336 XXXXXXXXXXXXXXELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
++ +L+ A+KLF +M++ V+PD ++ +++ LC G++ +
Sbjct: 433 GVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKA 492
Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
++ IEK +D I+ +++ G+C
Sbjct: 493 LEIFGKIEKSKM--ELDIGIYMIIIHGMC 519
|
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| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 92/329 (27%), Positives = 160/329 (48%)
Query: 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKM 155
+ N C ++ +I +VE + V ++KV +C+ + A AM +LRKM
Sbjct: 183 LVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKV---MCKSGQTAL-AMELLRKM 238
Query: 156 PEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215
E ++ D + Y+ +I C+ G + A L M + DII Y ++I+GFC AGR
Sbjct: 239 EERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRW 298
Query: 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAXXXXXXXXXXXXDCSPNVVTYT 275
+D L + M + ++VA+SAL+D + G + A SP+ VTYT
Sbjct: 299 DDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGI--SPDTVTYT 356
Query: 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKXXXX 335
S+I FC + + +A +LD M + GC PN T + LI G+C +D+ +L K
Sbjct: 357 SLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLR 416
Query: 336 XXXXXXXXXXXXXXELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395
+L+ A++LF +M++ V+PD ++ +++ LC G+ +
Sbjct: 417 GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKA 476
Query: 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424
++E IEK +D I+++++ G+C
Sbjct: 477 LEIFEKIEKSKM--ELDIGIYNIIIHGMC 503
|
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| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 328 (120.5 bits), Expect = 2.7e-31, Sum P(2) = 2.7e-31
Identities = 83/272 (30%), Positives = 132/272 (48%)
Query: 114 IDVVEAYKEEGCVVSVKMM-KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172
+DVVE + + + ++I C K+ + ++AM VL KM E + PD + YN++I
Sbjct: 413 VDVVELMESRKLSPNTRTYNELIKGYC-KSNV-HKAMGVLNKMLERKVLPDVVTYNSLID 470
Query: 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
C G+ +A L+ M L PD TY SMI C + R+E+AC LF +++ G
Sbjct: 471 GQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNP 530
Query: 233 NLVAYSALLDGICRLGSMERAXXXXXXXXXXXXDCSPNVVTYTSVIQIFCGKGMMKEALG 292
N+V Y+AL+DG C+ G ++ A +C PN +T+ ++I C G +KEA
Sbjct: 531 NVVMYTALIDGYCKAGKVDEAHLMLEKMLSK--NCLPNSLTFNALIHGLCADGKLKEATL 588
Query: 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKXXXXXXXXXXXXXXXXXXELV 352
+ ++M +G P T + LI +G+ D AY +
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC 648
Query: 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
R RL +AE + +KM +GV PD S +I+
Sbjct: 649 REGRLLDAEDMMAKMRENGVSPDLFTYSSLIK 680
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| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 350 (128.3 bits), Expect = 2.8e-31, P = 2.8e-31
Identities = 89/343 (25%), Positives = 162/343 (47%)
Query: 86 LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARL 144
++ Y+ SF +N S + +V+ +GC + ++ N LC++ +
Sbjct: 178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237
Query: 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS 204
+ A+ +L+KM + + P +IYN +I C ++ A L M + P+++TY S
Sbjct: 238 -DLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNS 296
Query: 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAXXXXXXXXXXX 264
+I+ CN GR DA L M N+V +SAL+D + G + A
Sbjct: 297 LIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRS 356
Query: 265 XDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324
D P++ TY+S+I FC + EA + + M + C PN VT +TLIKGFC +DE
Sbjct: 357 ID--PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDE 414
Query: 325 AYQLIDKXXXXXXXXXXXXXXXXXXELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
+L + + + A+ +F +M++ GV PD + S+++
Sbjct: 415 GMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLD 474
Query: 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS--VLLLGLCR 425
LC G+V ++E +++ S ++ DI++ +++ G+C+
Sbjct: 475 GLCNNGKVETALVVFEYLQR----SKMEPDIYTYNIMIEGMCK 513
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LVS3 | PP422_ARATH | No assigned EC number | 0.5369 | 0.9831 | 0.9790 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00290074 | hypothetical protein (476 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 475 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 1e-15
Identities = 70/330 (21%), Positives = 144/330 (43%), Gaps = 38/330 (11%)
Query: 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD 198
C ++ + A+ VLR + E L+ D +Y +I + G + A E+ M + +
Sbjct: 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN 506
Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258
+ T+ ++I G AG++ A G + +M+ + V ++AL+ + G+++RA ++L
Sbjct: 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566
Query: 259 EMEKEGGDCSPNVVTYTSVIQIFCGKG----------MMKE------------------- 289
EM+ E P+ +T ++++ G M+ E
Sbjct: 567 EMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626
Query: 290 ------ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343
AL I D M+ G P+ V S L+ G+LD+A++++ G
Sbjct: 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVS 686
Query: 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403
YSSL+ K K+A +L+ + + ++P + +I LC G Q+ + + +++
Sbjct: 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746
Query: 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433
++G + + +S+LL+ + +
Sbjct: 747 RLGLCPNTIT--YSILLVA-SERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 3e-15
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317
P+VVTY ++I +C KG ++EAL + + M+ G PN T S LI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 3e-14
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246
PD++TY ++I G+C G++E+A LF MK+ G N+ YS L+DG+C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 1e-13
Identities = 65/270 (24%), Positives = 121/270 (44%), Gaps = 17/270 (6%)
Query: 129 VKMMKVIFNL----CEKARLANEAMWVLRKM-----PEFDLRPDTIIYNNVIRLFCEKGD 179
VK +V+FN C ++ + A VL +M P + PD I +++ G
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP---IDPDHITVGALMKACANAGQ 594
Query: 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239
+ A E+ + + ++ Y + G + A ++ MK+ G + V +SA
Sbjct: 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299
L+D G +++A E+L + K+G V+Y+S++ K+AL + + +++
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQG--IKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712
Query: 300 LGCAPNRVTISTLIKGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358
+ P T++ LI C EGN L +A +++ ++ G + YS L+V R
Sbjct: 713 IKLRPTVSTMNALITALC-EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 359 EAEKLFSKMLASGVKPDGLACSVMIRELCL 388
L S+ G+KP+ + C + LCL
Sbjct: 772 VGLDLLSQAKEDGIKPNLVMCRCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 5e-12
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
++V Y+ L+DG C+ G +E AL+L EM+K G PNV TY+ +I C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG--IKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 5e-11
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211
PD + YN +I +C+KG + A +L M + P++ TY +I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 2e-10
Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
A+ + M + ++PD + ++ ++ + GD+ A E+++ + ++Y S++
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692
Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC 267
NA + A L++ +K + +AL+ +C + +ALE+L EM K G C
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM-KRLGLC 751
Query: 268 SPNVVTYTSVIQIFC-GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
PN +TY S++ + K L +L + + G PN + + I G C+
Sbjct: 752 -PNTITY-SILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITGLCL-------- 800
Query: 327 QLIDKVVAGGSVS 339
+ +K A G
Sbjct: 801 RRFEKACALGEPV 813
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Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 17/243 (6%)
Query: 125 CVVSVKMMKVIFNLC------EKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178
CV+ ++ F C K +A V MPE T+ +N+++ + G
Sbjct: 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHG 304
Query: 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238
A L M + D T+ MI+ F LE A + R G ++VA +
Sbjct: 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANT 364
Query: 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
AL+D + G ME A + M ++ N++++ ++I + G +A+ + +RM
Sbjct: 365 ALVDLYSKWGRMEDARNVFDRMPRK------NLISWNALIAGYGNHGRGTKAVEMFERMI 418
Query: 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV-RTKRL 357
A G APN VT ++ G ++ +++ + + + + ++EL+ R L
Sbjct: 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478
Query: 358 KEA 360
EA
Sbjct: 479 DEA 481
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 6e-08
Identities = 49/245 (20%), Positives = 92/245 (37%), Gaps = 49/245 (20%)
Query: 160 LRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD--IITYVSMIKGFCNAGRLED 217
PD + N V+ + + G +I A L M P+ + ++ ++I G +AG +
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGNYRE 207
Query: 218 ACGLFKVM-----------------------------KRHGCAANLVAYS------ALLD 242
A LF+ M + H C AL+D
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
+ G +E A + M ++ V + S++ + G +EAL + M G
Sbjct: 268 MYSKCGDIEDARCVFDGMPEK------TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321
Query: 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362
+ ++ T S +I+ F L+ A Q ++ G ++LV + R+++A
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
Query: 363 LFSKM 367
+F +M
Sbjct: 382 VFDRM 386
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 4e-07
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331
G P+ VT +TLI G C G +DEA +L+D+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 5e-07
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226
L PD++TY ++I G C AGR+++A L M+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387
Y++L+ + +++EA KLF++M G+KP+ S++I LC
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.6 bits (107), Expect = 1e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298
P+VVTY ++I C G + EA+ +LD ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 59/258 (22%), Positives = 112/258 (43%), Gaps = 36/258 (13%)
Query: 148 AMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207
A V +MP R D I +N +I + E G+ + EL M + + PD++T S+I
Sbjct: 241 ARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 208 GFCNAGRLEDACGLFK-----------VMKRHGCAANLVAYSALLDGICRLGSMERALEL 256
AC L V+K G A ++ ++L+ LGS A ++
Sbjct: 297 ----------ACELLGDERLGREMHGYVVKT-GFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316
ME + + V++T++I + G+ +AL ME +P+ +TI++++
Sbjct: 346 FSRMETK------DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376
G+LD +L + G +S ++L+ + K + +A ++F + V
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV---- 455
Query: 377 LACSVMIRELCLGGQVLE 394
++ + +I L L + E
Sbjct: 456 ISWTSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 6e-06
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 229 GCAANLVAYSALLDGICRLGSMERALELLGEME 261
G ++V Y+ L+DG+CR G ++ A+ELL EME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230
+TY S+I G+C AG+LE+A LFK MK G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN 233
+TY ++I G C AGR+E+A LFK MK G +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 43/183 (23%), Positives = 75/183 (40%), Gaps = 36/183 (19%)
Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIR-------LFCEKGDMIAADELMKGMG-------- 191
EA+ R+M L+P+++ + L C G I A L G+G
Sbjct: 473 EALIFFRQM-LLTLKPNSVTLIAALSACARIGALMC--GKEIHAHVLRTGIGFDGFLPNA 529
Query: 192 LIDLY-----------------PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL 234
L+DLY D++++ ++ G+ G+ A LF M G +
Sbjct: 530 LLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589
Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294
V + +LL R G + + LE ME++ +PN+ Y V+ + G + EA +
Sbjct: 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYS-ITPNLKHYACVVDLLGRAGKLTEAYNFI 648
Query: 295 DRM 297
++M
Sbjct: 649 NKM 651
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 7e-05
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN 305
VTY ++I C G ++EAL + M+ G P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 9e-05
Identities = 50/246 (20%), Positives = 93/246 (37%), Gaps = 49/246 (19%)
Query: 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224
++ N +I ++ + + A E+ + D+I++ S+I G R +A F+
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQ 480
Query: 225 MKRH-------------GCAA--------NLVAY-------------SALLDGICRLGSM 250
M CA + A+ +ALLD R G M
Sbjct: 481 MLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540
Query: 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310
A EK+ VV++ ++ + G A+ + +RM G P+ VT
Sbjct: 541 NYAWNQFNSHEKD-------VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593
Query: 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV-RTKRLKEAEKLFSKMLA 369
+L+ G + + + + S++ + + VV+L+ R +L EA +KM
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-- 651
Query: 370 SGVKPD 375
+ PD
Sbjct: 652 -PITPD 656
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGC 302
VTY S+I +C G ++EAL + M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 41/178 (23%), Positives = 77/178 (43%), Gaps = 11/178 (6%)
Query: 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257
++I++ ++I G+ N GR A +F+ M G A N V + A+L G E+ E+
Sbjct: 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449
Query: 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS---TLIK 314
M + P + Y +I++ +G++ EA ++ R AP + T++ L+
Sbjct: 450 QSMSENHR-IKPRAMHYACMIELLGREGLLDEAYAMIRR------APFKPTVNMWAALLT 502
Query: 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372
+ NL+ +K+ G Y L+ + R EA K+ + G+
Sbjct: 503 ACRIHKNLELGRLAAEKLYGMGPEKLNN-YVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 3e-04
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEG 264
V Y++L+ G C+ G +E ALEL EM+++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 4e-04
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271
V Y+ L+DG+C+ G +E ALEL EM++ G P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERG--IEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 31/165 (18%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLF 222
D + N++I+++ G A+++ M D +++ +MI G+ G + A +
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETY 377
Query: 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282
+M++ + + + +++L LG ++ ++L E++G VV ++I+++
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG--LISYVVVANALIEMYS 435
Query: 283 GKGMMKEALGILDRMEALGCAPNRVTIS--TLIKGFCVEGNLDEA 325
+ +AL + + P + IS ++I G + EA
Sbjct: 436 KCKCIDKALEVFHNI------PEKDVISWTSIIAGLRLNNRCFEA 474
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375
Y++L+ L + R++EA +LF +M G++PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.004
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232
+ TY +++ AG + A + + MK G
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.004
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 234 LVAYSALLDGICRLGSMERALELLGEMEKEG 264
L Y+ALL + + G + AL +L EM+ G
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASG 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.95 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.82 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.7 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.67 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.54 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.48 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.47 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.47 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.46 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.45 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.44 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.43 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.42 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.35 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.34 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.33 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.33 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.31 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.26 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.26 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.25 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.25 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.2 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.19 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.18 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.17 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.16 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.16 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.13 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.12 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.06 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.03 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.03 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.99 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.97 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.95 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.95 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.9 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.9 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.84 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.82 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.79 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.79 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.78 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.75 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.75 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.73 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.72 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.71 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.7 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.68 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.67 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.67 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.65 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.65 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.64 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.63 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.6 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.58 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.58 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.57 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.55 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.53 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.51 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.5 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.49 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.47 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.47 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.43 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.4 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.39 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.36 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.33 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.18 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.16 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.15 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.15 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.12 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.12 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.11 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.1 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.09 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.07 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.04 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.03 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.0 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.98 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.89 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.89 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.82 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.79 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.79 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.76 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.74 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.7 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.69 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.68 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.64 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.64 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.61 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.6 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.6 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.59 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.58 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.57 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.55 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.53 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.49 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.48 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.47 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.47 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.46 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.41 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.39 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.36 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.35 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.3 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.29 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.28 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.25 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.24 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.23 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.21 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.17 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.17 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.11 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.09 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.08 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.06 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.06 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.04 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.01 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.01 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.98 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.96 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.92 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.88 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.86 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.78 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.7 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.68 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.67 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.64 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.61 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.59 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.41 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.37 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.36 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.34 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.32 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.26 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.26 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.09 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.08 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.07 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.96 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.96 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.93 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.9 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.81 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.8 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.8 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.71 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.62 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.61 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.61 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.59 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.52 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.52 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.52 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.47 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.38 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.34 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.24 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.18 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.17 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.1 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.92 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.85 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.69 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.54 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.51 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.41 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.39 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.31 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.13 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.03 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.0 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.96 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.95 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.91 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.9 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.79 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.5 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.5 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.49 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.48 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.26 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.23 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.04 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 93.02 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.99 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.71 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 92.7 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.7 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.61 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.48 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 92.44 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.38 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.31 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.28 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 92.16 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 91.87 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.83 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.79 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.76 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.65 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 91.43 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.28 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.81 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.78 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 89.99 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.95 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 89.85 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.25 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.89 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 88.83 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.48 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.54 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 87.22 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.2 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.17 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.16 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.84 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.71 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.68 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 84.87 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.8 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.69 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.68 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 84.55 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 84.44 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 84.21 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 84.0 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.88 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 83.65 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.49 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.73 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 82.47 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 82.11 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.99 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.93 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 80.87 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 80.66 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 80.33 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 80.23 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.23 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.2 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-61 Score=488.26 Aligned_cols=379 Identities=19% Similarity=0.257 Sum_probs=259.7
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.+....|+++|..+.. |+..+|+.++..+++.++++.|.++++.|.+.|+.||..+|+.+|.+|++.|++++|.+
T Consensus 419 ~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 419 QRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred CCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 3444455555444321 56666666777677777777777777777777777777777777777777777777777
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--C
Q 011905 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR--H 228 (475)
Q Consensus 151 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~ 228 (475)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+ .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 77777666666777777777777777777777777777776666667777777777777777777777777777654 4
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011905 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
|+.||..+|+.++.+|++.|++++|.++|++|.+ .+++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e--~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~T 651 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHE--YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 5666777777777777777777777777777766 34566666777777777777777777777777777677777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k 731 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777676677777777777777777777777777777666667777777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011905 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
.|++++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|
T Consensus 732 ~G~~eeAlelf~eM~~~Gi~P--d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc 799 (1060)
T PLN03218 732 GNQLPKALEVLSEMKRLGLCP--NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777777777777776666655 66677777777777777777777777777777777777776666543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-60 Score=480.52 Aligned_cols=411 Identities=17% Similarity=0.248 Sum_probs=391.1
Q ss_pred CCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHH
Q 011905 56 KLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV 134 (475)
Q Consensus 56 ~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (475)
..+...+..++.++ ..++...|+++|.++....-..++...+..++..+.+.+..+.|.++++.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 34445555566664 67899999999999976655667888888899999999999999999998864 89999999
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 011905 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 214 (475)
+|.+|++.|++++|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|...+.++.||..+|+.+|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765678999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011905 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (475)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011905 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
|..+|+.||.+|++.|++++|.++|++|.+.|+.| |..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P--dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP--TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999876 8999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHhHHhhccc
Q 011905 455 VEHLKKSGDEELITNLPK 472 (475)
Q Consensus 455 ~~~~~~~g~~~~a~~l~~ 472 (475)
+.+|.+.|+.+.|.++..
T Consensus 761 L~a~~k~G~le~A~~l~~ 778 (1060)
T PLN03218 761 LVASERKDDADVGLDLLS 778 (1060)
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 999999999999998764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=466.46 Aligned_cols=399 Identities=16% Similarity=0.175 Sum_probs=355.4
Q ss_pred HHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011905 59 STCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 59 ~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 137 (475)
...+..++..+ ..+.+..|+++|.|+....++.|+..+|+.++..+.+.++.+.+.+++..|.+.|+.||..+|+.++.
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~ 166 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 33566677665 67899999999999987777889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.|++.|++++|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.+.
T Consensus 167 ~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 167 MHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999975 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|+.+||.+|.+|++.|++++|+++|++|
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999989888999999999999999999999999988854 68888999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011905 298 EALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377 (475)
Q Consensus 298 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 377 (475)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 88889999999999999999999999999999998888888888888888888888888888888888885 47788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCChhhHHHHHH
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-KRIWLQGPYVDKIVE 456 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~l~~ 456 (475)
+|+.||.+|++.|+.++|.++|++|.+.|+.| |..+|+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++.
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAP--NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 88888888888888888888888888888876 788888888888888888888888888875 588888888888888
Q ss_pred HHHhcCCHhHHhhcccc
Q 011905 457 HLKKSGDEELITNLPKI 473 (475)
Q Consensus 457 ~~~~~g~~~~a~~l~~~ 473 (475)
+|.+.|+.++|.++.+.
T Consensus 471 ~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 471 LLGREGLLDEAYAMIRR 487 (697)
T ss_pred HHHhcCCHHHHHHHHHH
Confidence 88888888888877653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-55 Score=440.41 Aligned_cols=398 Identities=17% Similarity=0.178 Sum_probs=364.2
Q ss_pred CCCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH
Q 011905 55 AKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK 133 (475)
Q Consensus 55 ~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (475)
..++...+..++..| ..++.+.+.+++..+ ...|+.|+..+|+.++..+.+.|+++.|.++|++|.+ ||..+|+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n 193 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWG 193 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHH
Confidence 357888899999987 567777888887655 4568999999999999999999999999999999854 7999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 011905 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 213 (475)
.+|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 011905 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGI 293 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 293 (475)
++++|.++|++|.+ +|..+|+.++.+|++.|++++|.++|++|.+ .++.||..||+.++.+|++.|++++|.++
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~i 347 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD--SGVSIDQFTFSIMIRIFSRLALLEHAKQA 347 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999864 5899999999999999999999999999988 45789999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011905 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 294 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 373 (475)
+..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ ||..+||.||.+|++.|+.++|.++|++|.+.|+.
T Consensus 348 ~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 348 HAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999965 57788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEK-IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
||..||+.++.+|++.|++++|.++|+.|.+ .|+.| +..+|+.++++|++.|++++|.+++++| ++.|+..+|+
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p--~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~ 498 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP--RAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWA 498 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC--CccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHH
Confidence 9999999999999999999999999999986 57766 8889999999999999999999998765 6778888999
Q ss_pred HHHHHHHhcCCHhHHhhccc
Q 011905 453 KIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l~~ 472 (475)
.++.+|...|+.+.++++.+
T Consensus 499 ~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 499 ALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred HHHHHHHHcCCcHHHHHHHH
Confidence 99999999998888876653
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=443.71 Aligned_cols=396 Identities=18% Similarity=0.174 Sum_probs=280.2
Q ss_pred CHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHH
Q 011905 58 DSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136 (475)
Q Consensus 58 ~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 136 (475)
+...++.++..+ ..+....|+++|..+. ..++.|+..+|+.++..+.+.++.+.+.+++..|.+.|+.||..+|+.++
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li 330 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHH
Confidence 344455555543 4556666666666553 34667777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
.+|++.|++++|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 331 ~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~ 406 (857)
T PLN03077 331 QMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD 406 (857)
T ss_pred HHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHH
Confidence 777777777778777777764 6777788888888888888888888888877788888888888888888888888
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+|.++++.|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|+++|++
T Consensus 407 ~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 407 VGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE------KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC------CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888888754 5777888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011905 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 297 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 376 (475)
|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++|+.+|++.|++++|.++|+.+ .||.
T Consensus 481 m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~ 554 (857)
T PLN03077 481 MLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDV 554 (857)
T ss_pred HHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCCh
Confidence 875 5888888888888877777777777777777777776666555555555555555555555555544 3555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCChhhHHHHH
Q 011905 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML-KKRIWLQGPYVDKIV 455 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~l~ 455 (475)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNP--DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 555555555555556666666666555555544 55555555555555555666666665555 445555555555556
Q ss_pred HHHHhcCCHhHHhhccc
Q 011905 456 EHLKKSGDEELITNLPK 472 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l~~ 472 (475)
.+|.+.|+.++|.++.+
T Consensus 633 ~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 633 DLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHhCCCHHHHHHHHH
Confidence 66666665555555543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-53 Score=438.20 Aligned_cols=398 Identities=16% Similarity=0.160 Sum_probs=281.7
Q ss_pred CHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHH
Q 011905 58 DSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136 (475)
Q Consensus 58 ~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 136 (475)
++...+.++..+ ..+....|+.+|..+. ..+..|+..+|..++..+.+.+..+.+..++..+.+.+..++...+|.++
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~-~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQ-ELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHH-hcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 444445555543 4666777777776654 34566677777777777777777777777777777777677777777777
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..|++.|+++.|.++|++|.+ ||..+||.+|.+|++.|++++|.++|++|...|+.||..||+.++++|+..++++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 777777777777777777764 5677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..+||.+|.+|++.|++++|+++|++
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777653 5667777777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011905 297 MEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 297 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 376 (475)
|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 777777777777777777777777777777777777777777777777777777777777777777777764 4566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
.+|+.+|.+|++.|++++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.++++.|.+.|+.++..+++.++.
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P--d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSP--DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 677777777777777777777777777776655 666777777777777777777777777777777777777777777
Q ss_pred HHHhcCCHhHHhhccc
Q 011905 457 HLKKSGDEELITNLPK 472 (475)
Q Consensus 457 ~~~~~g~~~~a~~l~~ 472 (475)
+|.+.|+.+.|.++.+
T Consensus 433 ~y~k~g~~~~A~~vf~ 448 (857)
T PLN03077 433 MYSKCKCIDKALEVFH 448 (857)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 7777777777766553
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-24 Score=222.70 Aligned_cols=385 Identities=11% Similarity=0.022 Sum_probs=326.0
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|.+.+.-..... +.+...+..+...+...|+.+.|..+++.+.+.+ +.+...+..+...+.+.|++++|.
T Consensus 511 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHH
Confidence 4677888888877665432 3456777788888888899999999999887765 556777888888999999999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
.+++.+.+.. +.+...|..+..++...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++++.+..
T Consensus 588 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 665 (899)
T TIGR02917 588 AILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK 665 (899)
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999987653 4577889999999999999999999999987654 4566778888899999999999999999988764
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011905 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
+.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+...+ |+..++
T Consensus 666 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 666 -PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 3467888899999999999999999999998753 4677788888899999999999999999988864 555778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011905 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389 (475)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 389 (475)
..+..++.+.|++++|.+.++.+.+... .+...+..+...|...|+.++|...|+++.+.. +.+...+..+...+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 8889999999999999999999988654 367888999999999999999999999999764 45678888999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhh
Q 011905 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
|+ .+|+.+++++.+.. | .+..++..+...+...|++++|.++++++++.+ +.++.++..+..++.+.|+.++|.+
T Consensus 818 ~~-~~A~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA--P-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred Cc-HHHHHHHHHHHhhC--C-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99 88999999998864 2 366778889999999999999999999999988 5689999999999999999999998
Q ss_pred ccc
Q 011905 470 LPK 472 (475)
Q Consensus 470 l~~ 472 (475)
+++
T Consensus 893 ~~~ 895 (899)
T TIGR02917 893 ELD 895 (899)
T ss_pred HHH
Confidence 875
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-23 Score=218.54 Aligned_cols=376 Identities=12% Similarity=0.046 Sum_probs=197.9
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.++.+.|..++.-... ..+.+...+..+...+...++++.|.+.++.+.+.. +.+...+..+...+...|++++|.+
T Consensus 444 ~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 520 (899)
T TIGR02917 444 SGQFDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ 520 (899)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444455544443322 223344555555566666666666666666655543 3344455555555666666666666
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011905 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
.|+.+.+.+ +.+..++..+...+.+.|+.++|...++++...+ +.+...+..+...+.+.|++++|..+++.+.+..
T Consensus 521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 597 (899)
T TIGR02917 521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA- 597 (899)
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence 666655433 2345555555566666666666666666554433 3344455555555555666666666665555432
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+.+...|..+..+|.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+..++.
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 3345555556666666666666666666555432 2344455555555555666666666665555432 22344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+...+...|++++|.++++.+.+... .+...+..+...+...|++++|.+.|+++.+. .|+..++..+..++.+.|
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 750 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASG 750 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCC
Confidence 555555555555555555555554432 23344555555555555555555555555543 233344444555555555
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011905 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
+.++|.+.++.+.+.. +.+...+..+...|...|++++|.++|+++++.. +.++..+..+...+.+.|+
T Consensus 751 ~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 751 NTAEAVKTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred CHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 5555555555555432 1244455555555555555555555555555544 3444444444444444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-21 Score=184.91 Aligned_cols=298 Identities=13% Similarity=0.108 Sum_probs=170.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC---HhhHHHHHHHHHhcCChh
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD---TIIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~ 181 (475)
...++++.|...++.+.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44566666777777766654 34455666666666667777777777766665321111 234566666666666777
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCChHHHHHHH
Q 011905 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN----LVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 182 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
.|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|.+.|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7776666665532 34455666666666666666666666666665442221 113344555566666666666666
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011905 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 337 (475)
+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|.+.|++++|...++.+.+..
T Consensus 204 ~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 204 KKALAAD---PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHhHC---cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 6665532 223445555566666666666666666666554322223445555666666666666666666665543
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCC
Q 011905 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL---GGQVLEGFCLYEDIEKIGFLSSV 411 (475)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 411 (475)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++.+.++.|.|
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 33334455566666666666666666665543 4555555555554443 33556666666666655554433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-21 Score=185.07 Aligned_cols=304 Identities=14% Similarity=0.071 Sum_probs=252.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC---hhhHHHHHHHHHhc
Q 011905 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD---IITYVSMIKGFCNA 212 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 212 (475)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..+...+.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 335567899999999999999865 34667899999999999999999999999987532221 25678889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHhcCCHHH
Q 011905 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN---VVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~ 289 (475)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+. ..+. ...+..+...+.+.|++++
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-DSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 99999999999998763 44678899999999999999999999999987531 1111 2245667778899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998764 3346678888899999999999999999999865443356788999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCC
Q 011905 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR---KNHSVEAAKLARFMLKKRIWL 446 (475)
Q Consensus 370 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~ 446 (475)
. .|+...+..+...+.+.|++++|..+++++.+.. | +...++.++..+.. .|+.++++.++++|.++++.|
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P--~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH--P--SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--c--CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 6 5777777888999999999999999999998863 3 66788888877764 569999999999999998888
Q ss_pred Chh
Q 011905 447 QGP 449 (475)
Q Consensus 447 ~~~ 449 (475)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 776
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-18 Score=169.47 Aligned_cols=323 Identities=12% Similarity=0.086 Sum_probs=186.3
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|+.++.-...... ........+.......|+++.|...++.+.+.. +-+...+..+...+.+.|++++|.
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p--~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai 130 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAK--NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVA 130 (656)
T ss_pred hcCCcchhHHHhHHHHHhCC--CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHH
Confidence 45666666666554433221 122233333344445667777777777666654 445556666666666677777777
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
..+++..+.. +.+...+..+..++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+.+..
T Consensus 131 ~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 131 DLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcC
Confidence 7777666542 2345566666666667777777777666654432 1222222222 23556677777777666665543
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC
Q 011905 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE----ALGILDRMEALGCAPN 305 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~ 305 (475)
..++...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|++++ |...|++..+.. +.+
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~ 283 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG---LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDN 283 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCC
Confidence 22333344445556666677777777777666532 3345556666666666666664 566666666542 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHH
Q 011905 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA-CSVMIR 384 (475)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~ 384 (475)
...+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|...|+++.+. .|+... +..+..
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~ 360 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 556666666666677777777777666665432 3444555666666677777777777666654 343322 222344
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011905 385 ELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~ 405 (475)
++...|+.++|...|++..+.
T Consensus 361 al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 566667777777777666664
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-17 Score=164.50 Aligned_cols=364 Identities=12% Similarity=-0.033 Sum_probs=262.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcC
Q 011905 99 RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKG 178 (475)
Q Consensus 99 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 178 (475)
.....+...++++.|+..++...+. .|+...|..+..+|.+.|++++|++.++...+.+ +.+...|..+..++...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 3344556667777777777776654 4566667777777777777888887777776653 235566777777777777
Q ss_pred ChhHHHHHHHHhccCC----------------------------C-CCChhhHHHH------------------------
Q 011905 179 DMIAADELMKGMGLID----------------------------L-YPDIITYVSM------------------------ 205 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~----------------------------~-~~~~~~~~~l------------------------ 205 (475)
++++|+..|......+ . +++...+..+
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 7777765543322110 0 0000000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHHHHHHCC-C-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH
Q 011905 206 ------IKGF------CNAGRLEDACGLFKVMKRHG-C-AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV 271 (475)
Q Consensus 206 ------i~~~------~~~~~~~~a~~~~~~m~~~g-~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 271 (475)
+... ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|+..+++..+.. +...
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~---P~~~ 365 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD---PRVT 365 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcH
Confidence 0000 12357889999999988764 2 2345678888888999999999999999998743 3346
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011905 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
..|..+...+...|++++|+..|++..+.. +.+...|..+...+...|++++|...|++.++.+.. +...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHH
Confidence 678888889999999999999999988763 345778888999999999999999999999887643 466677888899
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC---ch-hhHHHHHHHHHhcC
Q 011905 352 VRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV---DS-DIHSVLLLGLCRKN 427 (475)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~-~~~~~li~~~~~~g 427 (475)
.+.|++++|+..|++..+.. +-+...++.+...+...|++++|...|++..+....... +. ..++..+..+...|
T Consensus 444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999988652 234678888888999999999999999998876421100 00 11222222334469
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 428 HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
++++|.+++++.+... +.+...+..+.+.+...|++++|.+.++
T Consensus 523 ~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 523 DFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred hHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999999999998876 5556678899999999999999987664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-18 Score=170.10 Aligned_cols=345 Identities=11% Similarity=0.025 Sum_probs=275.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc
Q 011905 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177 (475)
Q Consensus 98 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 177 (475)
..++..+.+.|+++.|..+++...... +-+...+..++.++...|++++|...|+++.+.. +.+...+..+...+...
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 345667788899999999999988865 4455666667777788999999999999998864 34677888899999999
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 011905 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
|++++|.+.++++.... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+.+.|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 99999999999998753 445778888999999999999999999988776433 33344333 3488899999999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 011905 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE----AYQLIDKVV 333 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~~~ 333 (475)
+.+.+.. ..++...+..+...+...|++++|+..+++..... +.+...+..+...+...|++++ |...++...
T Consensus 201 ~~~l~~~--~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 201 RALLPFF--ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHhcC--CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9987742 12344455566778899999999999999998764 3457778889999999999986 899999998
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 011905 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412 (475)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 412 (475)
+.... +...+..+...+...|++++|...+++..+. .|+ ...+..+..++...|++++|...++.+.+.+ | .+
T Consensus 278 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P-~~ 351 (656)
T PRK15174 278 QFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--G-VT 351 (656)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c-cc
Confidence 87543 6778999999999999999999999999976 444 5567778889999999999999999999864 2 23
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
...+..+..++...|++++|.+.|+++++......+..|...+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~ 395 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLL 395 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHH
Confidence 34455567788999999999999999998764333444443333
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-17 Score=175.82 Aligned_cols=386 Identities=10% Similarity=-0.003 Sum_probs=233.4
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCcc-CHHhHH------------HHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMK------------VIF 136 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~------------~li 136 (475)
..++.+.|...|....... +.+...+..+...+.+.+++++|...++...+..... ....+. ...
T Consensus 281 ~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 3566667777776655432 2355666667777777777777777777766543211 111111 112
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+.. +.+...+..+...+. .++.+
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~ 435 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPE 435 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHH
Confidence 34566777777777777777653 2355566667777777777777777777776543 223333333333332 12233
Q ss_pred HHHHHHHHHHHCCCC--------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHH
Q 011905 217 DACGLFKVMKRHGCA--------ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~--------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (475)
+|..+++.+...... .....+..+...+...|++++|++.|++..+.. +.+...+..+...|.+.|+++
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---PGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 333333222111000 001112223333444555555555555555432 223334444455555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHH--------------------------------------------HHHHHHHHhcCCHHH
Q 011905 289 EALGILDRMEALGCAPNRVTI--------------------------------------------STLIKGFCVEGNLDE 324 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~--------------------------------------------~~li~~~~~~~~~~~ 324 (475)
+|...++++.+... .+...+ ..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 55555555443211 111111 223344556666666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
|..+++. .+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...+...|+.++|++.++.+.+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7666651 22345567778889999999999999999999763 23567888899999999999999999998877
Q ss_pred cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C---ChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011905 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW--L---QGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 405 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.. +.+...+..+..++...|++++|.+++++++..... + +...+..+...+...|+.++|.+.++.
T Consensus 666 ~~---p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 666 TA---NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred cC---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 53 235667778888899999999999999999876422 2 224666778899999999999887653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-16 Score=162.67 Aligned_cols=404 Identities=9% Similarity=-0.001 Sum_probs=299.4
Q ss_pred cCCCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhH
Q 011905 54 KAKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMM 132 (475)
Q Consensus 54 ~~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 132 (475)
...+++..+..-+.-. ..++...|++.+.-... .-+.+...+..+...+...++++.|.++++...+.. +.+...+
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~ 86 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQ 86 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3456777776666653 58999999988766543 123455567888889999999999999999988764 5567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 011905 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 212 (475)
..+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...
T Consensus 87 ~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 87 RGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 788889999999999999999998763 34566 8888999999999999999999998764 44566667788888889
Q ss_pred CCHHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHhcCCCCCCcHH-HHH--
Q 011905 213 GRLEDACGLFKVMKRHGCAANL------VAYSALLDGIC-----RLGSM---ERALELLGEMEKEGGDCSPNVV-TYT-- 275 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~-----~~g~~---~~a~~~~~~~~~~~~~~~~~~~-~~~-- 275 (475)
+..++|++.++.... .|+. .....++..+. ..+++ ++|++.++.+.+... ..|+.. .+.
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~-~~p~~~~~~~~a 239 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH-DNPDATADYQRA 239 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc-cCCccchHHHHH
Confidence 999999998886654 2221 11222233222 22334 778888888885311 122221 111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHH
Q 011905 276 --SVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVV 349 (475)
Q Consensus 276 --~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~ 349 (475)
..+..+...|++++|+..|+.+.+.+.. |+. .-..+..+|...|++++|...|+.+.+..... .......+..
T Consensus 240 ~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~ 318 (765)
T PRK10049 240 RIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFY 318 (765)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHH
Confidence 1134556779999999999999887532 332 22235678999999999999999987654321 1244666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011905 350 ELVRTKRLKEAEKLFSKMLASGV-----------KPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
++...|++++|..+++.+.+... .|+. ..+..+...+...|+.++|++.++++.... +.+...
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~---P~n~~l 395 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA---PGNQGL 395 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH
Confidence 88999999999999999886521 1232 244566677889999999999999998864 346788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+..+...+...|++++|++.+++.+... |.+...+......+.+.|++++|+.+++
T Consensus 396 ~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 396 RIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999999999999999887 6667777788889999999999988764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=159.00 Aligned_cols=361 Identities=14% Similarity=0.068 Sum_probs=240.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHH-HHH
Q 011905 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN-NVI 171 (475)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~-~ll 171 (475)
-.+.|..+..++..+|+++.|+.+++.+.+.. +-..+.|.-+..++...|+.+.|.+.|.+..+. .|+..... .+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 45678888889999999999999999988865 456788888888888899988998888887764 35544333 233
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCh
Q 011905 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN-LVAYSALLDGICRLGSM 250 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~g~~ 250 (475)
..+-..|+.++|...+.+..+.. +-=...|..|...+-..|+...|++.|++..+.. |+ ...|-.|...|...+.+
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcc
Confidence 33344677777777776665532 1224556677777777777777777777776653 22 45666677777777777
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLI 329 (475)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~ 329 (475)
++|...|.+..... +...+++..+...|...|+.+-|++.+++..+. .|+ ...|+.|..++-..|++.+|.+.+
T Consensus 269 d~Avs~Y~rAl~lr---pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cY 343 (966)
T KOG4626|consen 269 DRAVSCYLRALNLR---PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCY 343 (966)
T ss_pred hHHHHHHHHHHhcC---CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHH
Confidence 77777777666532 234555666666667777777777777776654 333 456777777777777777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011905 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (475)
+..+..... .....+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|...+++..+..
T Consensus 344 nkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-- 418 (966)
T KOG4626|consen 344 NKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-- 418 (966)
T ss_pred HHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC--
Confidence 776664432 2445666777777777777777777766643 443 2455666666777777777777777766642
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 409 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
| .-...|+.+...|-..|+.++|+..+.+++..+ |.=...++.+...|..+|+.++|..-.
T Consensus 419 P-~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 419 P-TFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred c-hHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 2 245566777777777777777777777776665 444455666777777777776665544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-16 Score=156.95 Aligned_cols=361 Identities=13% Similarity=0.002 Sum_probs=277.5
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|...|....... |+...|..+...+...++++.|++.++...+.. +.+...|..+..++...|++++|+
T Consensus 139 ~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 4688999999998876433 567788888888999999999999999988875 556778888899999999999998
Q ss_pred HHHHhcccCCC-----------------------------CCCHhhHHHH------------------------------
Q 011905 150 WVLRKMPEFDL-----------------------------RPDTIIYNNV------------------------------ 170 (475)
Q Consensus 150 ~~~~~m~~~~~-----------------------------~~~~~~~~~l------------------------------ 170 (475)
.-|......+- +++...+..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 76544321110 0000000000
Q ss_pred HHHH------HhcCChhHHHHHHHHhccCC-C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 171 IRLF------CEKGDMIAADELMKGMGLID-L-YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 171 l~~~------~~~g~~~~a~~~~~~m~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+... ...+++++|.+.|++....+ . +.....|+.+...+...|++++|+..++...+.. +-+...|..+..
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~ 373 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRAS 373 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 0000 11257889999999988654 2 2345678888888899999999999999998863 224668888999
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 322 (475)
.+...|++++|...|+++.+.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLN---SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCH
Confidence 9999999999999999998853 4567889999999999999999999999998864 33567778888899999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHH
Q 011905 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL------ACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~ 396 (475)
++|...|+..++... .+...++.+...+...|++++|++.|++..+.....+.. .++.....+...|++++|.
T Consensus 450 ~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~ 528 (615)
T TIGR00990 450 ASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE 528 (615)
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999987543 256788999999999999999999999988653211111 1122222334469999999
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+++++..+.. | .+...+..+...+.+.|++++|+++|++..+..
T Consensus 529 ~~~~kAl~l~--p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 529 NLCEKALIID--P-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHhcC--C-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999988864 2 355678999999999999999999999998765
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-16 Score=168.62 Aligned_cols=362 Identities=10% Similarity=-0.008 Sum_probs=265.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCC-CHhhHH-----------
Q 011905 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-DTIIYN----------- 168 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~----------- 168 (475)
...+...++++.|...++...+.. +-+...+..+..++.+.|++++|+..|++..+..... ....|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345567899999999999998865 5578889999999999999999999999988754221 111121
Q ss_pred -HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011905 169 -NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 169 -~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
.....+.+.|++++|.+.|+++.... +.+...+..+...+...|++++|++.|++..+.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 22446778999999999999998764 4566778888999999999999999999998864 235666777777764 4
Q ss_pred CChHHHHHHHHHHHhcCCC------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 011905 248 GSMERALELLGEMEKEGGD------CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN 321 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 321 (475)
++.++|..+++.+...... .......+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 6789999988765432100 00112356678888999999999999999998864 2356677888999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------------
Q 011905 322 LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS------------------------------- 370 (475)
Q Consensus 322 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------- 370 (475)
+++|...++++.+.... +...+..+...+...++.++|...++.+...
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999999875432 2333333333344444555544444332110
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 371 --------GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 --------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
....+...+..+...+.+.|+.++|+..++++.+.. +.+...+..++..|...|++++|.+.++...+.
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~---P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE---PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 012344556667777888899999999999888864 246788888889999999999999999988765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 443 RIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
. +.+......+..++...|++++|.++++
T Consensus 667 ~-p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 667 A-NDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred C-CCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4 4566677778888888999998887664
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-17 Score=151.26 Aligned_cols=356 Identities=16% Similarity=0.071 Sum_probs=296.9
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH-HHHHHHHhcCCHHHHH
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK-VIFNLCEKARLANEAM 149 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~ 149 (475)
.++.+.|++.++.+..... .....|..+...+...|+.+.|.+.+.+..+. .|+..... .+-......|+..+|.
T Consensus 129 rg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7888999999888765442 35678888889999999999999999887775 45544433 3555667789999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 229 (475)
.-|.+..+.. +-=...|..|...+-..|+...|+..|++..+.+ +.=...|-.|...|...+.+++|+..|.+.....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 9999887753 1234678999999999999999999999998653 2236788899999999999999999999888764
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011905 230 CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
+.....+..+...|...|.++.|+..|++..+.. +.=...|+.|..++-..|++.+|.+.+....... +-.....
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~---P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam 357 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ---PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAM 357 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcC---CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHH
Confidence 3357788889999999999999999999998853 2336789999999999999999999999988763 3346678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 011905 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCL 388 (475)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~ 388 (475)
+.|...|...|++++|..+|....+-... -...++.|...|-+.|++++|+..|++.+ .+.|+. ..|+.+-..|-.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal--rI~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEAL--RIKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHH--hcCchHHHHHHhcchHHHH
Confidence 89999999999999999999998875432 24568999999999999999999999998 457874 688899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|+++.|.+.+.+....+ | .-.+.++.|...|-..|+..+|+.-+++.++..
T Consensus 435 ~g~v~~A~q~y~rAI~~n--P-t~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQIN--P-TFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred hhhHHHHHHHHHHHHhcC--c-HHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 999999999999998865 2 357789999999999999999999999999876
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-15 Score=149.75 Aligned_cols=191 Identities=9% Similarity=-0.004 Sum_probs=154.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHH
Q 011905 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----VSSGGCYSSLVVEL 351 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~ 351 (475)
.+-++...|++.++++.|+.|...|.+....+-..+..+|...+..++|..++..+..... .++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 4557788899999999999999888765666888999999999999999999999976542 22334457788899
Q ss_pred HhcCCHHHHHHHHHHHHHCC-------------CCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHH
Q 011905 352 VRTKRLKEAEKLFSKMLASG-------------VKPDGLA-CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS 417 (475)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~-------------~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 417 (475)
...+++++|..+++++.+.. ..||-.. +..++..+...|++.+|++.++++.... |-|.....
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a---P~n~~l~~ 454 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA---PANQNLRI 454 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 99999999999999998731 1223322 3345667888999999999999998864 35889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.+...+...|++.+|.+.++.+.... |-+..+....+.++...|++.+|+.+.
T Consensus 455 ~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 455 ALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999997777775 677778888899999999999997765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-15 Score=152.36 Aligned_cols=373 Identities=9% Similarity=-0.011 Sum_probs=274.2
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|...+.-..... +.+...+..+...+...++.++|...++...+.. +.+.. +..+..++...|+.++|+
T Consensus 61 ~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al 136 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDEL 136 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHH
Confidence 5788899999888765542 3456667788888899999999999999998874 55666 888888999999999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh------hhHHHHHHHHH-----hcCCH---
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI------ITYVSMIKGFC-----NAGRL--- 215 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~~~~--- 215 (475)
..++++.+.. +.+...+..+..++...|..+.|++.++.... .|+. .....+++... ..+++
T Consensus 137 ~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~a 212 (765)
T PRK10049 137 RAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIA 212 (765)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHH
Confidence 9999999864 34666677788888899999999999987764 2331 11222333222 12234
Q ss_pred HHHHHHHHHHHHC-CCCcCHH-HH----HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 011905 216 EDACGLFKVMKRH-GCAANLV-AY----SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 216 ~~a~~~~~~m~~~-g~~~~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (475)
++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+...+.+...+ +..+|...|++++
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~ 290 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEK 290 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHH
Confidence 7788888888864 2223221 11 1113455677999999999999988532122223333 5778999999999
Q ss_pred HHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCC---hhhHHHHHHHHH
Q 011905 290 ALGILDRMEALGCAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----------VSS---GGCYSSLVVELV 352 (475)
Q Consensus 290 a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~li~~~~ 352 (475)
|+..|+++.+..... .......+..++...|++++|..+++.+..... .|+ ...+..+...+.
T Consensus 291 A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~ 370 (765)
T PRK10049 291 AQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK 370 (765)
T ss_pred HHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH
Confidence 999999987643211 134566677788999999999999999987632 122 234566778889
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
..|+.++|+++++++.... +-+...+..+...+...|++++|++.+++..+.. | .+...+......+.+.|++++|
T Consensus 371 ~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--P-d~~~l~~~~a~~al~~~~~~~A 446 (765)
T PRK10049 371 YSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--P-RNINLEVEQAWTALDLQEWRQM 446 (765)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--C-CChHHHHHHHHHHHHhCCHHHH
Confidence 9999999999999998763 3346777888888999999999999999999865 3 4667788888889999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHH
Q 011905 433 AKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
..+++++++.. |+......+-+.+
T Consensus 447 ~~~~~~ll~~~--Pd~~~~~~~~~~~ 470 (765)
T PRK10049 447 DVLTDDVVARE--PQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 99999999875 4444444444433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-14 Score=145.94 Aligned_cols=403 Identities=11% Similarity=0.011 Sum_probs=284.2
Q ss_pred HHHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHH
Q 011905 61 CVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCE 140 (475)
Q Consensus 61 ~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 140 (475)
.....+.....++...|+..|........-.+ +..+ .++.++...|+.++|+..++.... ..+........+...+.
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~-~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQS-GQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccch-hhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHH
Confidence 34555555568888888888877654332110 1233 677777788999999999988872 22333444444466888
Q ss_pred hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 141 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 220 (475)
..|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 8899999999999998865 335677777888888999999999999998765 4665556444444444566666999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHH--HHHHHHHh---------cCC---
Q 011905 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT--SVIQIFCG---------KGM--- 286 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~---------~g~--- 286 (475)
.++++.+.. +-+...+..++.++.+.|-...|.++..+-..- +.+....+- ..+.-..+ ..+
T Consensus 191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 999998875 336777888889999999998888777654321 112211110 00111111 122
Q ss_pred HHHHHHHHHHHHH-cCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 287 MKEALGILDRMEA-LGCAPNRV-----TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 287 ~~~a~~~~~~m~~-~~~~p~~~-----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
.+.|+.-++.+.. .+-.|... ...-.+-++...|++.++.+.|+.+...+......+-..+.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 3445555555543 22223221 22234557788999999999999999888654566788899999999999999
Q ss_pred HHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCCch-hhHHHHHHHH
Q 011905 361 EKLFSKMLASG-----VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF-----------LSSVDS-DIHSVLLLGL 423 (475)
Q Consensus 361 ~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~-~~~~~li~~~ 423 (475)
..+|+.+.... ..++......|.-++...+++++|..+++.+.+... .|.+|- ..+..++..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999997642 122344457889999999999999999999998321 222232 2344567778
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccccC
Q 011905 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~~ 474 (475)
...|+..+|.+.++++.... |-|..........+...|+...|++.++.+
T Consensus 427 ~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 89999999999999998888 899999999999999999999999988753
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-15 Score=129.51 Aligned_cols=362 Identities=16% Similarity=0.158 Sum_probs=206.5
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHHH--HHhcCCHHHH-HHHHHhcccCC-------------------CCCC
Q 011905 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL--CEKARLANEA-MWVLRKMPEFD-------------------LRPD 163 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A-~~~~~~m~~~~-------------------~~~~ 163 (475)
..+....+.-+++.|++.|++.++..--.|+.. |....++--| .+-|-.|.+.| .+.+
T Consensus 127 S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 127 SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 345566666677777777777666665555552 2222211111 11122222211 1235
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
..+|..+|.++|+-...++|.+++++......+.+..+||.+|.+-.-..+ .+++.+|....+.||..|+|+++.+
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHH
Confidence 566777777777777777777777777666666777777777765433222 5666777777777777777777777
Q ss_pred HHhcCChHH----HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCC----CCHHHHH
Q 011905 244 ICRLGSMER----ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE-ALGILDRMEA----LGCA----PNRVTIS 310 (475)
Q Consensus 244 ~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~----~~~~----p~~~~~~ 310 (475)
..+.|+++. |.+++.+|.+ .|+.|...+|..+|..+++.++..+ +..++.++.. ..++ -|...|.
T Consensus 283 ~akfg~F~~ar~aalqil~EmKe--iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKE--IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHH--hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 777776554 3455566666 5567777777777777777666543 3333333322 1111 1344556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGG----SVSS---GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 383 (475)
..|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.....|+.|+-.-.-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 66666666666666666655544321 1111 1234455555666666666666666666555556666666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-----------------CCCC-----------------------------------
Q 011905 384 RELCLGGQVLEGFCLYEDIEKIGF-----------------LSSV----------------------------------- 411 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~-----------------~~~~----------------------------------- 411 (475)
++....|.++-..++|..++..|- +|.+
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~ 520 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW 520 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence 666666666665555555554331 1111
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011905 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW----LQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.....+.+...+.+.|+.++|.+++....+++-+ |.......+++.-...++...|..+++.
T Consensus 521 ~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~ 586 (625)
T KOG4422|consen 521 PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQL 586 (625)
T ss_pred ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2344566666677888888888888877654321 3333334556666666666666666553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-14 Score=126.26 Aligned_cols=364 Identities=11% Similarity=0.109 Sum_probs=253.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 171 (475)
.+..+|..+|..+++-...+.|.+++.+........+..+||.+|.+-.-. ...++..+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHH
Confidence 456678888888888888888888888888877788888888888754422 2267788888888888888999988
Q ss_pred HHHHhcCChhH----HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----CCCC----cCHHHHH
Q 011905 172 RLFCEKGDMIA----ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED-ACGLFKVMKR----HGCA----ANLVAYS 238 (475)
Q Consensus 172 ~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~g~~----~~~~~~~ 238 (475)
.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +.++ .|...|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 88888887664 46677788888888888888888888888887654 3333333332 2222 2445667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC--CCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEG--GDCSPN---VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
..+..|.+..+.+-|.++-.-+.... ..+.|+ ..-|..+....|+....+.....|+.|.-.-+-|+..+...++
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l 440 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL 440 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence 77888888888888888765544311 112233 2235567777788888888889999998877888889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CH--------HH-----HHHH-------HHHHHHCCC
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-RL--------KE-----AEKL-------FSKMLASGV 372 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~~-----A~~~-------~~~m~~~~~ 372 (475)
++....+.++-.-++|..++..|...+...-.-++..+++.. .. .. |..+ -.+|.+.
T Consensus 441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~-- 518 (625)
T KOG4422|consen 441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ-- 518 (625)
T ss_pred HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--
Confidence 999899999998899988888775554444444444454443 11 00 1111 1223333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHH---HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011905 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHS---VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
.-.....+.+.-.+.+.|+.++|.+++..+.+.+-.-+ .....| -+++.-.+.+....|...++-|...+.+.-..
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip-~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~ 597 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP-RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEG 597 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC-CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhH
Confidence 33445667777778999999999999999976543321 233344 56667778899999999999998887654444
Q ss_pred hHHHHHHHHHhcC
Q 011905 450 YVDKIVEHLKKSG 462 (475)
Q Consensus 450 ~~~~l~~~~~~~g 462 (475)
.-+.+...|.-..
T Consensus 598 La~RI~e~f~iNq 610 (625)
T KOG4422|consen 598 LAQRIMEDFAINQ 610 (625)
T ss_pred HHHHHHHhcCcCH
Confidence 5566666554433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-13 Score=137.49 Aligned_cols=222 Identities=10% Similarity=-0.003 Sum_probs=161.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011905 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 316 (475)
|..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++... +|+...+..+..++
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~----~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQR----QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHh----CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 3333333333 4555666666665553 244333333344445788888888888876554 34444556666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
.+.|+.++|...++...+.+.. +...+..+.......|++++|...+++..+. .|+...+..+...+.+.|+.++|.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~ 629 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAV 629 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888888776522 2233333334444569999999999998865 577888888888999999999999
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+++..+.. +.+...++.+...+...|++++|++.+++.++.. |-++..+..+..++...|+.++|...++
T Consensus 630 ~~l~~AL~l~---Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 630 SDLRAALELE---PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999875 3477888889899999999999999999999887 7788889999999999999999887664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.5e-12 Score=133.58 Aligned_cols=345 Identities=11% Similarity=0.014 Sum_probs=251.5
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccC--CCCCCHhhHHHHHHHHHhcCC---hhH
Q 011905 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIRLFCEKGD---MIA 182 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~---~~~ 182 (475)
+...++...++.|-+.. +-+......+--...+.|+.++|.++|+..... +-.++....+.++..|.+.+. ..+
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 34444444455554432 335555555555677889999999999988762 122344455577777777765 223
Q ss_pred HHHH-------------------------HHHhccCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 011905 183 ADEL-------------------------MKGMGLIDLYP--DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 183 a~~~-------------------------~~~m~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
+..+ +....... ++ +...|..+..++.. ++.++|...+.+.... .|+..
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~ 510 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAW 510 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchH
Confidence 3222 22222111 33 56677777777776 8888999988877765 36655
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 315 (475)
....+...+...|++++|...|+++... +|+...+..+..++.+.|+.++|...+++..+.+ +.+...+..+...
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~ 585 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQ 585 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHH
Confidence 5444555667899999999999998663 3555556677888899999999999999998764 2233333344444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 394 (475)
....|++++|...+++.++... +...|..+..++.+.|++++|+..+++..+. .|+ ...+..+..++...|+.++
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 5566999999999999998664 5778999999999999999999999999976 454 5667777778999999999
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
|+..+++..+.. +.+...+..+..++...|++++|...+++.++.. +-+..+.....+......+++.+.+-
T Consensus 662 Ai~~l~~AL~l~---P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~ 733 (987)
T PRK09782 662 SREMLERAHKGL---PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEE 733 (987)
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999864 3478899999999999999999999999999887 55556666777777777767666553
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-13 Score=128.85 Aligned_cols=286 Identities=12% Similarity=0.033 Sum_probs=120.8
Q ss_pred hcCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh--hHHHHHHHHHhcCCHHH
Q 011905 141 KARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII--TYVSMIKGFCNAGRLED 217 (475)
Q Consensus 141 ~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~~~~~~ 217 (475)
..|+++.|.+.+.+..+.. |+. ..+-....++.+.|+.+.|.+.+.+..+.. |+.. ........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 3455556655555544432 222 222223344445555555555555554321 2221 22223445555555555
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHH-HHHH---HHHhcCCHHHHHHH
Q 011905 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYT-SVIQ---IFCGKGMMKEALGI 293 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~li~---~~~~~g~~~~a~~~ 293 (475)
|...++.+.+.. +-+..++..+...|.+.|++++|.+.+..+.+.+. .+...+. .-.. .....+..+++.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~---~~~~~~~~l~~~a~~~~l~~~~~~~~~~~ 247 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL---FDDEEFADLEQKAEIGLLDEAMADEGIDG 247 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 555555555543 22444555555555555555555555555555321 1222221 1111 11222222222223
Q ss_pred HHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHH
Q 011905 294 LDRMEALGC---APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE--LVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 294 ~~~m~~~~~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~ 368 (475)
+..+.+... +.+...+..+...+...|+.++|.+++++..+.........+. ++.. ....++.+.+.+.++...
T Consensus 248 L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~-~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 248 LLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP-LCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH-HHHHhhhcCCCChHHHHHHHHHHH
Confidence 333332211 1144444455555555555555555555555443322111000 1111 122344444555554444
Q ss_pred HCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 369 ASGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 369 ~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
+. .|+. .....+...+.+.|++++|.+.|+........| +...+..+...+.+.|+.++|.+++++.
T Consensus 327 k~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p--~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 327 KN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL--DANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred Hh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33 2222 223344444455555555555555322222222 3334445555555555555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-13 Score=126.18 Aligned_cols=283 Identities=13% Similarity=0.039 Sum_probs=177.2
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhh-HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH--HHHHHHHhcCCHHHH
Q 011905 142 ARLANEAMWVLRKMPEFDLRPDTII-YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV--SMIKGFCNAGRLEDA 218 (475)
Q Consensus 142 ~~~~~~A~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~~~~~~a 218 (475)
.|++++|.+.+....+.. +++.. |-....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 578888887777655432 12222 222334446778888888888877653 34543332 235567777888888
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcH------HHHHHHHHHHHhcCCHHHHHH
Q 011905 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNV------VTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~a~~ 292 (475)
...++.+.+.. +-+......+...|.+.|++++|.+++..+.+... ..+.. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888877765 33667777777888888888888888888877532 11111 122233333334444555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011905 293 ILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 372 (475)
+++.+... .+.+......+...+...|+.++|.+++++..+.... .. -.++.+....++.+++.+..+...+.
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~--~~--l~~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYD--ER--LVLLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--HH--HHHHHhhccCCChHHHHHHHHHHHhh--
Confidence 55555432 2346666777777777777777777777777764332 21 12233334557777777777777765
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 373 KPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 373 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.|+ ...+..+.+.|.+.+++++|.+.|+.+.+.. | +...|..+...+.+.|+.++|.+++++.+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P--~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR--P--DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 343 3445666677777777777777777777753 2 556667777777777777777777776654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-12 Score=122.00 Aligned_cols=358 Identities=11% Similarity=0.022 Sum_probs=277.0
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh
Q 011905 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 181 (475)
..+..+|+.+.|.+++.+..+.. +.....|-.|...|-+.|+.+++...+-.....+ +.|...|..+.....+.|+++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 45566699999999999998876 6788899999999999999999998887665443 457789999999999999999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHH----HHHHHHHHhcCChHHHHHHH
Q 011905 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAY----SALLDGICRLGSMERALELL 257 (475)
Q Consensus 182 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~----~~ll~~~~~~g~~~~a~~~~ 257 (475)
.|.-.|.+..+.. +++...+---...|-+.|+...|..-|.++.+...+.|..-+ -.+++.+...++-+.|.+.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999998875 566666666678889999999999999999987433333333 33456677778889999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------------------------CHHHHH
Q 011905 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP---------------------------NRVTIS 310 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---------------------------~~~~~~ 310 (475)
+.....+ +-..+...+++++..+.+...++.+......+......+ +... .
T Consensus 304 e~~~s~~-~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 304 EGALSKE-KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHhhc-cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 8887732 224566678899999999999999999988887622222 2222 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVS--SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
.++-++.+....+....+..........| +...|.-+..+|...|++++|+.+|..+......-+...|-.+..+|..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 23334455555556666666666666443 5678899999999999999999999999976555567788899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH--------HcCCCCChhhHHHHHHHHHh
Q 011905 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML--------KKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~~~~~~~~~~~~l~~~~~~ 460 (475)
.|..+.|.+.++...... +.+...--.|...+-+.|+.++|.+.+..+. ..+..|+..........+.+
T Consensus 462 l~e~e~A~e~y~kvl~~~---p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA---PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HhhHHHHHHHHHHHHhcC---CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999999999864 2356667777788889999999999998854 23445666777777888888
Q ss_pred cCCHhHH
Q 011905 461 SGDEELI 467 (475)
Q Consensus 461 ~g~~~~a 467 (475)
.|+.++-
T Consensus 539 ~gk~E~f 545 (895)
T KOG2076|consen 539 VGKREEF 545 (895)
T ss_pred hhhHHHH
Confidence 8887763
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-12 Score=123.68 Aligned_cols=285 Identities=11% Similarity=0.026 Sum_probs=221.9
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHH--HHHHHHHhcCChhHHH
Q 011905 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYN--NVIRLFCEKGDMIAAD 184 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~ 184 (475)
.|+++.|.+.+....+..-.| ...|.....+..+.|+++.|...++++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 599999998888755542122 222333344568899999999999999874 45554333 3367888999999999
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 011905 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 185 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
+.++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998866 556788889999999999999999999999998755322 13334444445556677777777
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011905 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 337 (475)
+.+.+. .+.+......+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.+..+...+...
T Consensus 253 ~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 253 KNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 777553 2457778888999999999999999999998874 445422 233444466999999999999988765
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 338 VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 338 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
. |...+..+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++-...
T Consensus 326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3 6677889999999999999999999999965 799999999999999999999999999987653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=136.04 Aligned_cols=257 Identities=18% Similarity=0.157 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 204 SMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 204 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|.+.++++...+ +-+...+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~---~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD---KANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccc-c
Confidence 33555566666666666664433332 12234444445555555666777777777666543 1234445555555 5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHH
Q 011905 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~ 361 (475)
..+++++|.++++...+.. ++...+...+..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 6666777776666554432 344555666666667777777777777665432 2335556666667777777777777
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 362 KLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 362 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
+.+++.++. .|+ ......++..+...|+.+++.++++...+.. +.+...+..+..++...|++++|+.++++..
T Consensus 167 ~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 167 RDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHHHHhccccccccccccccccc
Confidence 777777755 443 5556666667777777777777777666653 1244566677777777777777777777777
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 441 KKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+.. +.|+.+...+..++...|+.++|.++.+
T Consensus 242 ~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 242 KLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHS-TT-HHHHHHHHHHHT-------------
T ss_pred ccc-cccccccccccccccccccccccccccc
Confidence 665 6677777777777777777777776654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=134.92 Aligned_cols=160 Identities=19% Similarity=0.193 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011905 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 316 (475)
+..++..+.+.++++++.++++.+... ...+.+...|..+...+.+.|+.++|++.+++..+.. +.|......++..+
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEEL-PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLL 190 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH--T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 333444444444444444444443321 1112333333344444444444444444444443321 11233333333344
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
...|+.+++.++++...+.. ..+...+..+..+|...|+.++|...|++..+.. +.|......+..++...|+.++|.
T Consensus 191 i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------
T ss_pred HHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 44444444333333333322 1122233334444444444444444444443321 113333333444444444444444
Q ss_pred HHHH
Q 011905 397 CLYE 400 (475)
Q Consensus 397 ~~~~ 400 (475)
++.+
T Consensus 269 ~~~~ 272 (280)
T PF13429_consen 269 RLRR 272 (280)
T ss_dssp ----
T ss_pred cccc
Confidence 4433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-12 Score=109.26 Aligned_cols=287 Identities=14% Similarity=0.131 Sum_probs=196.7
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH------hhHHHHHHHHHhcCCh
Q 011905 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT------IIYNNVIRLFCEKGDM 180 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~g~~ 180 (475)
.+++++|.++|-+|.+.. +-+.++.-+|.+.|.+.|..++|+.+.+.+.+. ||. .....|..-|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence 467888888888888743 445666667788888999999999999888763 432 2344566678888888
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCChHHHHHH
Q 011905 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN----LVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
|+|.++|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+-++. ...|.-+...+....+.+.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999988887654 34456677788888888888888888888887654433 23455666666667788888888
Q ss_pred HHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011905 257 LGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 336 (475)
+.+..+.+ +..+.+--.+.+.+...|+++.|.+.++...+.+...-..+...|..+|...|+.++....+..+.+..
T Consensus 203 l~kAlqa~---~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 203 LKKALQAD---KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhhC---ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88887753 233444445566777888888888888888877655556667777888888888888888888777754
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 011905 337 SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL---GGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 337 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~ 405 (475)
..++. -..+.+.-....-.+.|...+.+-+.. +|+...+..+|..-.. -|...+....++.|...
T Consensus 280 ~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADA--ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccH--HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 43332 333434334444455566555555544 6787777777765432 23455555566666554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-12 Score=120.29 Aligned_cols=292 Identities=10% Similarity=-0.004 Sum_probs=212.5
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCH-HhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH--hhHHHHHHHHHhcCChh
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSV-KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT--IIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~ 181 (475)
...|+++.|.+.+....+.. |+. ..+-....+..+.|+.+.|.+.+++..+.. |+. ...-.....+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 45799999999998876653 443 333344567888999999999999987643 443 33444578888999999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH---HHhcCChHHHHHHHH
Q 011905 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG---ICRLGSMERALELLG 258 (475)
Q Consensus 182 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~ 258 (475)
.|.+.++.+.+.. +-+...+..+...+...|++++|.+++..+.+.++.+.......-..+ ....+..+++.+.+.
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999876 556778889999999999999999999999998754333221111122 233333333334444
Q ss_pred HHHhcCC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 259 EMEKEGG-DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT--I-STLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 259 ~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~-~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
.+.+... ..+.+...+..+...+...|+.++|.+++++..+.. ||... + ..........++.+.+.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 4444210 012377888889999999999999999999998863 34331 1 1111222345788899999988887
Q ss_pred CCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 335 GGSVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 335 ~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
.... |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6433 34 567788999999999999999999544434479999999999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-11 Score=117.34 Aligned_cols=325 Identities=14% Similarity=0.024 Sum_probs=251.9
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 218 (475)
....|++++|..++.++++.. +.+...|.+|...|-..|+.+++...+-..-..+ +.|...|..+.....+.|+++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHH
Confidence 333499999999999998865 4678899999999999999999998876654443 56778899999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHH
Q 011905 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV----TYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~ 294 (475)
.-.|.+.++.. +++...+-.-+..|-+.|+...|...|.++.+.. .+.|.. .-..++..+...++.+.|.+.+
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999875 4466666667788999999999999999999842 111222 2233466677788889999999
Q ss_pred HHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------CCCChhhHHH
Q 011905 295 DRMEAL-GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------------------------SVSSGGCYSS 346 (475)
Q Consensus 295 ~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~ 346 (475)
+..... +-..+...++.++..+.+...++.|......+.... ..++..++ .
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 887652 334456678899999999999999998888776621 12222221 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+.-++......+...-+.....+..+.| +...|.-+..+|...|++.+|+.++..+....... +...|-.+..+|.
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~--~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ--NAFVWYKLARCYM 460 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc--chhhhHHHHHHHH
Confidence 3334445555555555555555555333 45678889999999999999999999999875432 6779999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..|.+++|++.+++.+... |.+...--.|...+.+.|+.|+|.+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 9999999999999999887 7777788889999999999999988764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-11 Score=104.72 Aligned_cols=302 Identities=14% Similarity=0.086 Sum_probs=221.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh------hHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII------TYVS 204 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~ 204 (475)
.|-.=++.+. .++.++|.+.|-+|.+.. +-+..+.-+|.+.|-+.|.+|+|+++...+.+ .||.. ....
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~q 112 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQ 112 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHH
Confidence 3333344444 456799999999998743 34556667888999999999999999998876 34432 3445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHHHHHHH
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYTSVIQI 280 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~li~~ 280 (475)
|.+-|...|-+|.|+.+|..+.+.| ..-......|+..|-...+|++|+++-+++.+.+. .+. ...|.-+...
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~--q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG--QTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC--ccchhHHHHHHHHHHHH
Confidence 6777889999999999999998865 33566788899999999999999999998888531 121 1224445555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
+....+++.|..++.+..+.+.. .+..--.+-+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 55678899999999988876422 33333455577888999999999999999988776678889999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH---hcCCHHHHHHHHH
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC---RKNHSVEAAKLAR 437 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~ 437 (475)
..++..+.+.. +....-..+........-.+.|..++.+-.... |+...+..++..-. ..|...+-+.+++
T Consensus 269 ~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~----Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr 342 (389)
T COG2956 269 LNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRK----PTMRGFHRLMDYHLADAEEGRAKESLDLLR 342 (389)
T ss_pred HHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC----CcHHHHHHHHHhhhccccccchhhhHHHHH
Confidence 99999998763 333334444444444556666776666555542 37788888887765 3466788888889
Q ss_pred HHHHcCCCCC
Q 011905 438 FMLKKRIWLQ 447 (475)
Q Consensus 438 ~m~~~~~~~~ 447 (475)
+|....+..+
T Consensus 343 ~mvge~l~~~ 352 (389)
T COG2956 343 DMVGEQLRRK 352 (389)
T ss_pred HHHHHHHhhc
Confidence 9987765443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-11 Score=108.82 Aligned_cols=379 Identities=12% Similarity=0.035 Sum_probs=225.1
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHh----HHHHHHHHHhcCCHHHHH
Q 011905 74 SQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM----MKVIFNLCEKARLANEAM 149 (475)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~ 149 (475)
...|+..+.......-|+.....--.+..++.+.+.+..|++.++...+.-...+-.+ .+.+--.+.+.|+++.|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 3455555555554444444333322333455566778888888877665432233333 333333677888888888
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh------------hHHHH------------
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII------------TYVSM------------ 205 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------------~~~~l------------ 205 (475)
.-|+...+. .|+..+--.|+-++.-.|+.++..+.|.+|......||.. ..+..
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 888887764 4676654445555556788888888888776532222211 11110
Q ss_pred ---------------------------------------------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCH
Q 011905 206 ---------------------------------------------------IKGFCNAGRLEDACGLFKVMKRHGCAANL 234 (475)
Q Consensus 206 ---------------------------------------------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 234 (475)
...+.+.|+++.|.++++-+.+..-+.-.
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 11233556666666666555443211111
Q ss_pred HHHHHHH------------------------------------HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011905 235 VAYSALL------------------------------------DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 235 ~~~~~ll------------------------------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
..-+.|- +.....|++++|.+.|.+...... .-+...-.+.
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda---sc~ealfnig 531 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA---SCTEALFNIG 531 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch---HHHHHHHHhc
Confidence 1111000 001123566666666666655211 1111111122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLK 358 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 358 (475)
-.+-..|+.++|++.|-.+..- +..+......+...|-...+...|.+++.+.... ++.|+.....|...|-+.|+-.
T Consensus 532 lt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdks 609 (840)
T KOG2003|consen 532 LTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKS 609 (840)
T ss_pred ccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchh
Confidence 3345566666666666655432 2234555666666677777777777776555432 2336677888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH-hcCCHHHHHHHHH
Q 011905 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC-RKNHSVEAAKLAR 437 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~ 437 (475)
.|++.+-+--.. ++.+..+...|...|....-++++..+|++..-. .| +..-|..++..|. +.|++..|+++++
T Consensus 610 qafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaali--qp--~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 610 QAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI--QP--NQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc--Cc--cHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 888776544322 3456677777877788888888899888877653 34 7788988887665 5799999999998
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhcCCHh
Q 011905 438 FMLKKRIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 438 ~m~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
..-.+ +|-+...+..+++.+...|-.+
T Consensus 685 ~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 685 DIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHh-CccchHHHHHHHHHhccccchh
Confidence 87654 5888889999999888887543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-11 Score=105.63 Aligned_cols=279 Identities=13% Similarity=0.071 Sum_probs=117.1
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 011905 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
|++..|+++..+-.+.+ +-....|..-..+.-..||.+.+-.++.+..+..-.++...+-+........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44444444444433332 11122233333333444444444444444444322333333444444444444444444444
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 011905 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-------VTISTLIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~ 330 (475)
+++.+.+ +.+.........+|.+.|++.....++..|.+.|.--+. .+|..+++-....+..+.-...|+
T Consensus 177 ~~ll~~~---pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 177 DQLLEMT---PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHhC---cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 4444432 233344444444444444444444444444444433222 233444443333333333333333
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 331 KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410 (475)
Q Consensus 331 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 410 (475)
....+ ...++..-.+++.-+.+.|+.++|.++..+..+.+..|+ ...++ .+.+.++...-.+..++-.+.. +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h---~ 325 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH---P 325 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC---C
Confidence 33221 111223334444445555555555555555554443332 11111 2234444444444444333322 1
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 411 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
.+...+.+|...|.+.+.|.+|.+.|+..++.+ |+..++..+..++.+.|+.+.|.++
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~--~s~~~~~~la~~~~~~g~~~~A~~~ 383 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLR--PSASDYAELADALDQLGEPEEAEQV 383 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC--CChhhHHHHHHHHHHcCChHHHHHH
Confidence 123445555555555555555555555444332 5555555555555555555555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-10 Score=100.78 Aligned_cols=286 Identities=12% Similarity=0.047 Sum_probs=165.2
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 011905 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL 186 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 186 (475)
.|++.+|.+++..-.+.+-. ....|..-..+.-+.|+.+.+-..+.+..+..-.++...+-+..+.....|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 46777777777666665522 33444445556666777777777777666542244555555666666677777777777
Q ss_pred HHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 011905 187 MKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELLGE 259 (475)
Q Consensus 187 ~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~ 259 (475)
++++.+.+ +-+........++|.+.|++.....++..+.+.|.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 76666554 445566666677777777777777777777776654332 2445555555555555554455555
Q ss_pred HHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011905 260 MEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 260 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 339 (475)
.... .+.++..-..++.-+.+.|+.++|.++.++..+.+..|+. .. .-.+.+-++.+.-.+..+...+....
T Consensus 255 ~pr~---lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 255 QPRK---LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred ccHH---hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCC-
Confidence 4432 1233444445555566666666666666666665554441 11 11234445555555555554433221
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+...+.+|...|.+++.+.+|.+.|+...+. .|+..+|+.+..++.+.|+..+|.+..++...
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2345566666666666666666666655543 56666666666666666666666666665553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-10 Score=112.35 Aligned_cols=113 Identities=14% Similarity=0.066 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011905 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
+..++|+++|.+.++.. +-|...-|-+.-.++..|++..|..+|.+..+... ....+|-.+..+|...|+|..|++
T Consensus 626 k~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~---~~~dv~lNlah~~~e~~qy~~AIq 701 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS---DFEDVWLNLAHCYVEQGQYRLAIQ 701 (1018)
T ss_pred HHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh---hCCceeeeHHHHHHHHHHHHHHHH
Confidence 34677888888887653 33556666677778889999999999999998753 245678889999999999999999
Q ss_pred HHHHHHHcC-CCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 435 LARFMLKKR-IWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 435 ~~~~m~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+|+...+.- ...+..+...|.+++.+.|.+.++.+.+
T Consensus 702 mYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 702 MYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999888754 3567778899999999999988887654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-09 Score=97.73 Aligned_cols=312 Identities=12% Similarity=0.069 Sum_probs=219.0
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC--CChhhHHHHHHHHHhcCC
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY--PDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~ 214 (475)
.++....+.+++.+-.+.....|++-+...-+....+.-...+++.|+.+|+++.+...- -|..+|..++-.-.....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 355666677888888888888887666666666666677788899999999998876311 255667666543322111
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+..+.+-.-.--+--+.|+..+.+-|.-.++.++|...|++..+.+ +.....|+.+..-|....+...|++-+
T Consensus 315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 1122111111002234577888888888889999999999988854 455678888888999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011905 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (475)
+...+-+ +.|-..|-.|-++|.-.+...=|+-.|++.....+. |...|.+|.++|.+.++.++|++.|......| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9888764 457788888999999999988899899888775433 77889999999999999999999999888765 34
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 011905 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPY 450 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 450 (475)
+...+..|...+-+.++.++|.+.+++.++. |...+.....---|..-+.+.+++++|..+......- .+...-
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~ee 542 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEE 542 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHH
Confidence 6678888888898999999998888877663 3221111222222455566788888888776665544 344444
Q ss_pred HHHHHHHHHh
Q 011905 451 VDKIVEHLKK 460 (475)
Q Consensus 451 ~~~l~~~~~~ 460 (475)
-..+++-+.+
T Consensus 543 ak~LlReir~ 552 (559)
T KOG1155|consen 543 AKALLREIRK 552 (559)
T ss_pred HHHHHHHHHH
Confidence 4455554444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-11 Score=115.62 Aligned_cols=285 Identities=13% Similarity=0.068 Sum_probs=217.3
Q ss_pred CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC--CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 144 LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID--LYPDIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 144 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
+.++|...|+.+.+. +.-+..+...+..+|...+++++|.++|+.+.+.. ..-+.++|.+.+--+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 357899999996553 34455777889999999999999999999987643 11356677776654422 122222
Q ss_pred H-HHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 222 F-KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 222 ~-~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+.....
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld---p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD---PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC---CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 2 2333332 4468899999999999999999999999999853 237889999988899999999999999887653
Q ss_pred CCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011905 301 GCAPNRVTIS---TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL 377 (475)
Q Consensus 301 ~~~p~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 377 (475)
|+..|+ -+.-.|.+.++++.|+-.|+...+-++. +.+....+...+.+.|+.|+|+++++++.....+ |..
T Consensus 485 ----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l 558 (638)
T KOG1126|consen 485 ----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPL 558 (638)
T ss_pred ----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cch
Confidence 444454 4566789999999999999999886644 5566777778888999999999999999865422 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 446 (475)
.--.-...+...++.++|++.++++++. .| .+..+|..+...|-+.|+.+.|+.-|--|.+...+.
T Consensus 559 ~~~~~~~il~~~~~~~eal~~LEeLk~~--vP-~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 559 CKYHRASILFSLGRYVEALQELEELKEL--VP-QESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred hHHHHHHHHHhhcchHHHHHHHHHHHHh--Cc-chHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 3333445567789999999999999985 33 478889999999999999999999999888776333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-10 Score=100.35 Aligned_cols=326 Identities=11% Similarity=0.029 Sum_probs=220.3
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH--
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV-- 203 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-- 203 (475)
..|..-+-.....+.+.|....|.+.|...... -+..|.+-+....-..+.+.+..+.. +.+.|...+.
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~-----~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVV-----GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHh-----cCcccchHHHHH
Confidence 344433333334566777778888877766542 12233333332222223332222221 1122211111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011905 204 SMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 204 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
.+..++-.....+++.+-.+.....|++-+...-+....+.....++++|+.+|+++.+...=--.|..+|..++- .+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 2345566666788888888888888877666666666777778889999999999998853111135666766553 33
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (475)
..+-. +..+.+-...--+--+.|..++.+.|+-.++.++|...|+..++.+.. ...+|+.+..-|....+...|++-
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 22211 222221111111233467788888888888999999999998887655 356688888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
|+..++-+ +-|...|-.|-++|.-.+...-|+-+|++..... | .|...|.+|..+|.+.++.++|++.|......|
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--P-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--P-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--C-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 99988654 4477888889999999999999999999888853 3 588899999999999999999999999998887
Q ss_pred CCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 444 IWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
..+...+..+.+.+.+.++.++|...
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 56778888899999999888887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-11 Score=115.50 Aligned_cols=275 Identities=14% Similarity=0.077 Sum_probs=213.0
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCChHHHHHH
Q 011905 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG--CAANLVAYSALLDGICRLGSMERALEL 256 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~ 256 (475)
+..+|...|..+... +.-+..+...+.++|...+++++|+++|+.+.+.. ..-+..+|.+.+--+-+.= ++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHH
Confidence 567899999885443 33444666778899999999999999999998753 1236677887775544321 2222
Q ss_pred H-HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 257 L-GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 257 ~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
+ +.+.... +-...+|-++..+|.-.++++.|++.|++..+. .| ...+|+.+-.-+.....+|.|...|+..+.
T Consensus 409 Laq~Li~~~---~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 409 LAQDLIDTD---PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHhhC---CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 2 2333322 456789999999999999999999999999885 44 678888888888888999999999999876
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 011905 335 GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413 (475)
Q Consensus 335 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 413 (475)
.+.. +-.+|..+.-.|.+.++++.|+-.|++..+- .| +.+....+...+-+.|+.|+|+++++++...+.+ |.
T Consensus 484 ~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k---n~ 557 (638)
T KOG1126|consen 484 VDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK---NP 557 (638)
T ss_pred CCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---Cc
Confidence 5433 3345666778899999999999999999865 45 4566677778889999999999999999987643 44
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
..--..+..+...+++++|+..++++...- |.+..++..+++.|.+.|+.+.|..-
T Consensus 558 l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 558 LCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred hhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHh
Confidence 444455667778999999999999998775 77788899999999999999988653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=118.57 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=49.2
Q ss_pred hCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHh
Q 011905 86 LQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI 165 (475)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~ 165 (475)
...|..|+..+|..++..++..|+.+.|- +|..|.-+..+.....|+.++....+.++.+.+. .|...
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 34455556666666666666666666555 5666655555556666666666655555554443 35555
Q ss_pred hHHHHHHHHHhcCChhH
Q 011905 166 IYNNVIRLFCEKGDMIA 182 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~ 182 (475)
+|..|..+|...||+..
T Consensus 85 tyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHHHHHHHHhccchHH
Confidence 66666666666665443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-09 Score=102.77 Aligned_cols=315 Identities=12% Similarity=0.007 Sum_probs=196.7
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC--CChhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY--PDIITYVSMIKGFCNAGRLEDACGLF 222 (475)
Q Consensus 145 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~ 222 (475)
+..+++++...-..+ .-|+...+.|...|.-.|+++.+..+...+...... .-...|-.+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 344555555443322 245666777777777788888888877776553211 12334667778888888888888888
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 011905 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG----MMKEALGILDRME 298 (475)
Q Consensus 223 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~ 298 (475)
.+..+..-.--+..+.-+...|.+.|+++.+...|+.+.... +.+..+..++...|...+ ..++|..++....
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~---p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL---PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC---cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 776665322113334556777888888888888888887753 445666666766666664 4456666666555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 011905 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV----AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS---G 371 (475)
Q Consensus 299 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~ 371 (475)
+.- +.|...|-.+...+-.. +...++..|.... ..+..+.....|.+...+...|.+.+|...|...... .
T Consensus 408 ~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 442 34566666666655443 4334465555433 3444456777888888888888888888888887643 1
Q ss_pred CCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011905 372 VKPDGL------ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW 445 (475)
Q Consensus 372 ~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 445 (475)
..+|.. +--.+...+-..++.+.|.+.|..+.+.. +.-+..|-.++...-..+...+|..++++.+... .
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh---p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~ 561 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH---PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-S 561 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-c
Confidence 223331 11223344455678888888888888764 1233444444422334577888888888888766 6
Q ss_pred CChhhHHHHHHHHHhcCCHhHHhh
Q 011905 446 LQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
.++..+..++..+.+...+..|.+
T Consensus 562 ~np~arsl~G~~~l~k~~~~~a~k 585 (1018)
T KOG2002|consen 562 SNPNARSLLGNLHLKKSEWKPAKK 585 (1018)
T ss_pred CCcHHHHHHHHHHHhhhhhccccc
Confidence 777777777767766665554443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-08 Score=95.71 Aligned_cols=374 Identities=13% Similarity=-0.014 Sum_probs=202.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCcc--CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH
Q 011905 87 QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV--SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT 164 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~ 164 (475)
..|+.-+...+-.=...+...|..-....++......|+.- -..||..-.+.|.+.+.++-|..+|....+. ++-+.
T Consensus 472 ~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~ 550 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKK 550 (913)
T ss_pred hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchh
Confidence 34555555555555555555566666666666555555432 1235555555666666666666666655543 12344
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..|......--..|..+....+|++.... ++-....|-....-+...||...|..++....+.... +...|-..+..-
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle 628 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLE 628 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHh
Confidence 45555544444455555556666555442 2333344444445555556666666666655554322 455555555555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHH
Q 011905 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~ 323 (475)
.....++.|..+|.+.... .|+...|.--+...--.+..++|.+++++..+. -|+ ...|..+-+.+-+.++++
T Consensus 629 ~en~e~eraR~llakar~~----sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI----SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred hccccHHHHHHHHHHHhcc----CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHH
Confidence 6666666666666655542 245555554444444555566666666555543 222 233444445555555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (475)
.|...|..-.+.- +.....|-.|...=.+.|.+-.|..++++..-.+ +-+...|-..|+.=.+.|+.+.|..+..+..
T Consensus 703 ~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakAL 780 (913)
T KOG0495|consen 703 MAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKAL 780 (913)
T ss_pred HHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555554433321 1122334444444445555555555555555443 2234455555555555555555554444433
Q ss_pred HcCC------------CC---------------CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 404 KIGF------------LS---------------SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 404 ~~~~------------~~---------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
+... .| ..|..+.-.+...+-...++++|.+.|.+..+.+ +..-.+|.-+..
T Consensus 781 Qecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fyk 859 (913)
T KOG0495|consen 781 QECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYK 859 (913)
T ss_pred HhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHH
Confidence 3210 00 1155566666677777788888888888888777 666677888888
Q ss_pred HHHhcCCHhHHhhccc
Q 011905 457 HLKKSGDEELITNLPK 472 (475)
Q Consensus 457 ~~~~~g~~~~a~~l~~ 472 (475)
.+.+.|..+.-.++++
T Consensus 860 fel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 860 FELRHGTEEDQKEVLK 875 (913)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 8888886666555543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-08 Score=93.64 Aligned_cols=341 Identities=9% Similarity=0.051 Sum_probs=240.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCC--
Q 011905 89 SYRHSSFMYNRACEMSRIKQNPSIIIDVVEA----YKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-- 162 (475)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-- 162 (475)
..+.+.+.+-...+.-.+.|+.+.+..+++. +...|+..+...|-.=...|-..|..-.+..+.......|+.-
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed 514 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED 514 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch
Confidence 3445566666666666667777777666554 4556777777777777777777777777777777776665532
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
-..+|+.-.+.|.+.+.++-|..+|....+.. +.+...|......--..|..++...+|++.... ++-....|-....
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ak 592 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAK 592 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHH
Confidence 23467777777888888888888887776543 445666766666666677788888888887765 2334555666666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 322 (475)
-+-..|+...|..++..+.+.. +.+...|-..+.......+++.|..+|.+.... .|+...|..-+..-.-.++.
T Consensus 593 e~w~agdv~~ar~il~~af~~~---pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN---PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC---CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhH
Confidence 7777888888888888887743 346677777788888888888888888877664 56777777777776777888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYED 401 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~ 401 (475)
++|.+++++.++.-.. -...|..+.+.+-+.++++.|.+.|..-.+. -|+. ..|-.|...=-+.|.+-.|+.+++.
T Consensus 668 eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 8888888888775422 2355777777788888888888887765543 3443 3444454444566788888888888
Q ss_pred HHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 402 IEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 402 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
..-++ +.+...|-..|+.-.+.|..+.|..+..+++..
T Consensus 745 arlkN---Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe 782 (913)
T KOG0495|consen 745 ARLKN---PKNALLWLESIRMELRAGNKEQAELLMAKALQE 782 (913)
T ss_pred HHhcC---CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 87765 347788888888888888888888777666654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-11 Score=104.77 Aligned_cols=232 Identities=13% Similarity=0.023 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
.+=-+.+.++|.+.|.+.+|++.++.-..+ .|-+.||..+-.+|.+..++..|+.++.+-.+. .+.|+.......
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q----~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~A 297 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ----FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc----CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhH
Confidence 333356677777777777777777766653 356667777777777777777777777766654 222333334455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
+.+-..++.++|.++++...+.... +++...++...|.-.++++-|+.+|++++..|+. +...|+.+--+|...+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 6666677777777777777665432 4555666666677777777777777777777754 5556666666666777777
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011905 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
.++.-|++....--.|..-..+|..+.......|++..|.+.|+-.+..+ +.....++.+.-.-.+.|+.+.|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 77777777666544444455667777666667777777777777777666 55566677777777777777777766653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.6e-08 Score=88.85 Aligned_cols=386 Identities=11% Similarity=0.040 Sum_probs=222.4
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
+.+.++|..+|..+.... ..+..++-..++.-.+.+....|..+++.....-...|. .|-..+..=-..|++..|.+
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcccHHHHH
Confidence 455666777776664332 223444555555555666666666666665543222222 22223333334566666666
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 011905 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-G 229 (475)
Q Consensus 151 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g 229 (475)
+|++-.+- .|+...|++.|..=.+-+.++.|..+++...-. .|+..+|--..+.=.+.|+...|..+|+...+. |
T Consensus 163 iferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 163 IFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 66665543 466666666666666666666666666666532 466666666666666666666666666655442 1
Q ss_pred C-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----------------------------------------CCC
Q 011905 230 C-AANLVAYSALLDGICRLGSMERALELLGEMEKEG-----------------------------------------GDC 267 (475)
Q Consensus 230 ~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----------------------------------------~~~ 267 (475)
- ..+...+.+....=.++..++.|.-+|.-....- ..-
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 0 0011112222211112222333333222222110 011
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCC
Q 011905 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-------VTISTLIKGF---CVEGNLDEAYQLIDKVVAGGS 337 (475)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~---~~~~~~~~a~~~~~~~~~~~~ 337 (475)
+.|-.+|-..+..--..|+.+...++|++.... ++|-. ..|..+=-++ ....+.+.+.++++..++ +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--l 395 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--L 395 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--h
Confidence 345556666666666778888888888877765 44421 1121111111 234677778888877776 3
Q ss_pred CC-ChhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc
Q 011905 338 VS-SGGCYSSL----VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD 412 (475)
Q Consensus 338 ~~-~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 412 (475)
.| ...||..+ ...-.++.++..|.+++...+ |..|...+|...|..=.+.++++.++.++++..+.+ +.+
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~---Pe~ 470 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS---PEN 470 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---hHh
Confidence 33 23333333 333346677788888887777 667888888888877778888888888888888865 246
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
..+|......-...|+.+.|..+|.-+++... ......+...+.--...|.++.|..+.
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 67777776666677888888888888877642 233345667777777778888777665
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2e-11 Score=117.02 Aligned_cols=275 Identities=12% Similarity=0.122 Sum_probs=169.7
Q ss_pred HHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 011905 115 DVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194 (475)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 194 (475)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45556666777777777777777777777766666 7777666666666667777777666666655544
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH
Q 011905 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274 (475)
Q Consensus 195 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (475)
.|...||..|..+|...||... |+...+ -.-.+...+...|.-.....++..+.-. .+.-||..
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~-p~~lpda~-- 143 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCC-PHSLPDAE-- 143 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccC-cccchhHH--
Confidence 4666777777777777777554 222222 1222334445555555555555444322 12234432
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011905 275 TSVIQIFCGKGMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
..+....-.|-++.+++++..+..... .|..+ +++-+.... ....++.+......-.|+..+|.+++.+-..
T Consensus 144 -n~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 144 -NAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALA 216 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Confidence 234444556667777777665543211 11111 233333322 2233333333222225778888888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCC
Q 011905 354 TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428 (475)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 428 (475)
.|+.+.|..++.+|.+.|+..+..-|-.|+-+ .++..-+..+++.|.+.|+.| +..|+...+..+..+|.
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p--~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP--GSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCC--CcchhHHHHHhhhcchh
Confidence 88888888888888888888887777777654 777888888888888888877 77888887777777554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-10 Score=98.74 Aligned_cols=199 Identities=14% Similarity=0.108 Sum_probs=92.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 334444444444555555555554444322 2233444444444555555555555555444432 12334444444555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 324 (475)
...|++++|.+.+++..... ..+.....+..+...+...|++++|...+++..... +.+...+..+...+...|++++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDP-LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554421 011122334444445555555555555555554432 1123344455555555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
|...+++..+.. ..+...+..+...+...|+.++|..+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555554441 2233344444455555555555555555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-09 Score=107.97 Aligned_cols=251 Identities=13% Similarity=-0.001 Sum_probs=141.4
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011905 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFC---------NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
+.++|.+.|++..+.. +-+...|..+..++. ..+++++|...+++..+... -+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence 3456777777766543 223334444433332 22346777777777776642 256666666677777777
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLI 329 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 329 (475)
+++|...|++..+.+ +.+...+..+...+...|++++|+..+++..+.... +...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS---PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 777777777777643 334556666777777777777777777777665322 1222233344455567777777777
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011905 330 DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA-CSVMIRELCLGGQVLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 330 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 408 (475)
++..+...+-+...+..+..++...|+.++|...+.++... .|+... .+.+...|...| ++|...++.+.+..-.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 77665432223444566666677777777777777776543 344333 333334445555 3666666665543211
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 409 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
-+.+ ..+ +-..+.-.|+.+.+..+ +++.+.+
T Consensus 506 ~~~~-~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNN-PGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcC-chH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 1111 111 33334445666666555 6666554
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=6e-10 Score=97.55 Aligned_cols=200 Identities=15% Similarity=0.114 Sum_probs=120.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~ 106 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNYG 106 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHH
Confidence 4455556666666777777777776666543 2245566666666667777777777776666532 23445556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011905 279 QIFCGKGMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (475)
..+...|++++|.+.+++...... ......+..+..++...|++++|...+++..+.... +...+..+...+...|++
T Consensus 107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCH
Confidence 666667777777777766655321 112334555566666667777777777666654322 344566666666667777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++|...+++..+. ...+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 7777777666654 123444455555566666677777666665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-09 Score=108.14 Aligned_cols=268 Identities=13% Similarity=0.054 Sum_probs=190.3
Q ss_pred ccCHHhHHHHHHHHHh-----cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHH---------hcCChhHHHHHHHHhc
Q 011905 126 VVSVKMMKVIFNLCEK-----ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC---------EKGDMIAADELMKGMG 191 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~---------~~g~~~~a~~~~~~m~ 191 (475)
+.+...|...+.+-.. .+.+++|.+.|++..+.. +-+...|..+..++. ..+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 3456666666664321 234679999999998764 224556666655544 2345789999999998
Q ss_pred cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc-
Q 011905 192 LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN- 270 (475)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~- 270 (475)
+.+ +-+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. |+
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~----P~~ 405 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD----PTR 405 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CCC
Confidence 765 5567788888888999999999999999999875 3357788889999999999999999999999853 33
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011905 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 350 (475)
...+..++..+...|++++|...+++......+-+...+..+..++...|+.++|...+.++...... +....+.+...
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~ 484 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAE 484 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHH
Confidence 33334445557778999999999999876542224555777888888999999999999987665322 34445666667
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 351 LVRTKRLKEAEKLFSKMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
|...| ++|...++.+.+. ...+....+..+ .+.-.|+-+.+... +++.+.+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccc
Confidence 77777 4788777777652 223333333333 34556777766655 7777754
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-12 Score=81.22 Aligned_cols=50 Identities=38% Similarity=0.759 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011905 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 318 (475)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-09 Score=96.07 Aligned_cols=279 Identities=17% Similarity=0.113 Sum_probs=203.7
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHH--hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC--EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
-+.+.|+++.|+++++-+.+..-+.-...-|.|-..+. .-+++..|..+-+.....+ +-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 46778999999999888776543332233333332222 2346777777777665432 22233222223344567999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011905 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
++|.+.|++.......-....|| +.-.+-..|++++|+++|-++-.- +..++.+...+.+.|-...+...|++++.
T Consensus 507 dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i---l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI---LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 99999999998763221222232 334577889999999999887542 23567778888899999999999999997
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011905 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 375 (475)
+.... ++.|+...+.|...|-+.|+-..|++.+-+--+ .++.+..+..-|...|....-+++++..|++.. -++|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCcc
Confidence 77654 566788999999999999999999887654332 344577888889999999999999999999876 45899
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCC
Q 011905 376 GLACSVMIREL-CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNH 428 (475)
Q Consensus 376 ~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 428 (475)
..-|..++..| .+.|++++|..+++...++- +.|..+...|++.+...|-
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf---pedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF---PEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC---ccchHHHHHHHHHhccccc
Confidence 99999988765 56899999999999999864 3588899999998887774
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-12 Score=80.77 Aligned_cols=49 Identities=43% Similarity=0.983 Sum_probs=27.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011905 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2e-08 Score=90.86 Aligned_cols=219 Identities=13% Similarity=0.044 Sum_probs=141.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 011905 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 291 (475)
.|+.-.|..-|+..++....+ ...|--+..+|....+.++..+.|++....+ +-+..+|..-...+.-.+++++|.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld---p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD---PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC---CCCCchhHhHHHHHHHHHHHHHHH
Confidence 345555555555555543222 2225556666777777777777777777643 345556666666666677777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 371 (475)
.=|++..... +-+...|..+.-+..+.+++++++..|++.+++-+ ..+..|+.....+...++++.|.+.|+..++.
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP-~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFP-NCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 7777776642 22445566666666677788888888888877543 24667888888888888888888888877753
Q ss_pred CCCC-------H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 372 VKPD-------G--LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 372 ~~p~-------~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.|+ . ..-..++.. .-.+++..|.+++++..+.+. .....|..|...-.+.|+.++|+++|++....
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dp---kce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDP---KCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred -ccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCc---hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 222 1 111122221 123788888888888887652 24567788888888888888888888876644
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.1e-10 Score=96.33 Aligned_cols=231 Identities=14% Similarity=0.077 Sum_probs=172.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
+.+.++|.+.|.+.+|.+.++.-.+. .|-+.||-.|-+.|.+..+...|+.++.+-.+. .+-|+....-+...+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~---fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS---FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc---CCchhhhhhhhHHHHH
Confidence 45777888888888888888877766 466777888888888888888888888877763 2334333345666777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 362 (475)
..++.++|.++++...+.. +.++.....+...|...++.+.|+..++.+.+-|+. +...|+.+.-+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 7788888888888877653 335556666667777888888888888888888875 56778888888888888888888
Q ss_pred HHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 363 LFSKMLASGVKPDG--LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 363 ~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
-|.+....--.|+. ..|-.|-......||+..|.+.|+-....+ +.+...++.|...-.+.|++++|..+++...
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d---~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD---AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC---cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 88887764434443 445556666677888888888888888765 2367788888888888899999988888877
Q ss_pred HcC
Q 011905 441 KKR 443 (475)
Q Consensus 441 ~~~ 443 (475)
+..
T Consensus 457 s~~ 459 (478)
T KOG1129|consen 457 SVM 459 (478)
T ss_pred hhC
Confidence 654
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-09 Score=99.52 Aligned_cols=244 Identities=20% Similarity=0.175 Sum_probs=177.0
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CcCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhc-----C
Q 011905 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-----GC-AANLVA-YSALLDGICRLGSMERALELLGEMEKE-----G 264 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~ 264 (475)
.-..+...+...|...|++++|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 33456667889999999999999999887654 21 223332 344777888999999999999988652 2
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c--CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 011905 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA---L--GC-APNR-VTISTLIKGFCVEGNLDEAYQLIDKVVAG-- 335 (475)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~--~~-~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 335 (475)
...+.-..+++.|..+|++.|++++|...+++..+ . |. .|.. ..++.+...++..+++++|..++....+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 22223345677788899999999988888776542 1 11 1222 23566777888999999999998876542
Q ss_pred -CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 336 -GSVS----SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-----G-VKP-DGLACSVMIRELCLGGQVLEGFCLYEDIE 403 (475)
Q Consensus 336 -~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (475)
-+.+ -..+++.|...|...|++++|.+++++.+.. | ..+ ....++.|...|.+.++.++|.++|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 1111 2467999999999999999999999988742 1 122 24567888888999999999999988765
Q ss_pred H----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 404 K----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 404 ~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
. .|...+.-..+|..|...|-+.|++++|.++.+...
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4 343333346788999999999999999999988776
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-08 Score=95.36 Aligned_cols=284 Identities=17% Similarity=0.117 Sum_probs=162.0
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHh----
Q 011905 172 RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVA-YSALLDGICR---- 246 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~ll~~~~~---- 246 (475)
..+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |+... |..+..+..-
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3445566666666666554321 22223334445566666666666666666666653 33333 3333333311
Q ss_pred -cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 247 -LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM-KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 247 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 324 (475)
..+.+...++++++...- |.......+.-.+.....+ ..+..++..+...|+++ +|+.|-..|....+.+-
T Consensus 89 ~~~~~~~~~~~y~~l~~~y----p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY----PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccHHHHHHHHHHHHHhC----ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHH
Confidence 124556666666665531 3332222222222221122 23444455566666543 45555555555555555
Q ss_pred HHHHHHHHHhC----C----------CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 011905 325 AYQLIDKVVAG----G----------SVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELC 387 (475)
Q Consensus 325 a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~ 387 (475)
..+++...... + -.|+. .++.-+...|...|++++|++++++.++. .|+ +..|..-.+.+-
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilK 239 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH
Confidence 55555554322 1 12222 24456677777888888888888888765 555 456666677778
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhH--------HHHHHHHH
Q 011905 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYV--------DKIVEHLK 459 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------~~l~~~~~ 459 (475)
+.|++++|.+.++..+..+. .|...-+..+..+.++|+.++|.+++....+.+..|-.... ....++|.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~---~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDL---ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HCCCHHHHHHHHHHHHhCCh---hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887763 25555666667777888888888888777766643333221 35567788
Q ss_pred hcCCHhHHhhc
Q 011905 460 KSGDEELITNL 470 (475)
Q Consensus 460 ~~g~~~~a~~l 470 (475)
+.|++..|.+-
T Consensus 317 r~~~~~~ALk~ 327 (517)
T PF12569_consen 317 RQGDYGLALKR 327 (517)
T ss_pred HHhhHHHHHHH
Confidence 88887777643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-07 Score=87.34 Aligned_cols=88 Identities=8% Similarity=-0.123 Sum_probs=57.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
-.++..+-..|+++.|..+++...++- |+ -++.|..-.+.+...|.+++|..++++..+.+ .+|...-........
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHT--PT-liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmL 450 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHT--PT-LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYML 450 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccC--ch-HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHH
Confidence 345566667777777777777777652 21 34555555666777777777777777777666 455555556666677
Q ss_pred hcCCHhHHhhcc
Q 011905 460 KSGDEELITNLP 471 (475)
Q Consensus 460 ~~g~~~~a~~l~ 471 (475)
++.+.++|.+++
T Consensus 451 rAn~i~eA~~~~ 462 (700)
T KOG1156|consen 451 RANEIEEAEEVL 462 (700)
T ss_pred HccccHHHHHHH
Confidence 777777776655
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-07 Score=82.71 Aligned_cols=362 Identities=10% Similarity=0.023 Sum_probs=246.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhc
Q 011905 99 RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEK 177 (475)
Q Consensus 99 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~ 177 (475)
.....-...++...|..+++...... .-+...|-.-+.+=.++..+..|..+|+..+.. -|-+ ..|--.+.+=-..
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHh
Confidence 33334455677888999999988765 556777877888888999999999999998764 2333 3455555555667
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHH
Q 011905 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELL 257 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 257 (475)
|++..|.++|+...+. .|+...|++.|+.=.+.+.++.|..+|++.+-. .|++.+|-.....=.++|....|..+|
T Consensus 155 gNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 155 GNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred cccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 9999999999998754 799999999999999999999999999998865 589999999999889999999999999
Q ss_pred HHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------------C----------------
Q 011905 258 GEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--------------------G---------------- 301 (475)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------~---------------- 301 (475)
+...+.-.+-..+...+.+....-.+...++.|.-+|+-..+. |
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 9887631100111222333222222333444444444333222 0
Q ss_pred -------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHH--------HHHHhcCCHHHHHHHHH
Q 011905 302 -------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYSSLV--------VELVRTKRLKEAEKLFS 365 (475)
Q Consensus 302 -------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li--------~~~~~~g~~~~A~~~~~ 365 (475)
-+-|-.+|--.++.-...|+.+...++|+..+..-.+... ..|...| -.=....+.+.+.++|+
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1224444555555556667777777777777664322111 1111111 11124567777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 366 KMLASGVKPDGLACSVMIREL----CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
..++. ++....||..+--.| .++.++..|++++...... .| ...+|...|..-.+.++++....++++.+.
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cP--K~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CP--KDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CC--chhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77762 333345555443333 3556777888877776654 33 557788888887888888888888888888
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHhHHhhcccc
Q 011905 442 KRIWLQGPYVDKIVEHLKKSGDEELITNLPKI 473 (475)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~~ 473 (475)
-+ |-+-.+|......-...|+.+.|..+..+
T Consensus 466 ~~-Pe~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 466 FS-PENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred cC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 87 67777888888888888888888776654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.6e-08 Score=93.00 Aligned_cols=258 Identities=16% Similarity=0.093 Sum_probs=113.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc----
Q 011905 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK---- 177 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---- 177 (475)
.++...|+++.|++.++.-... +......+......+.+.|+.++|..+|..+.+.+ +.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 3445566666666666553222 22223334444556666666666666666666654 12333333333333111
Q ss_pred -CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 011905 178 -GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE-DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 178 -g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
.+.+...++++++...- |.......+.-.+.....+. .+...+..+...|+++ +|+.+-..|......+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 13455566666554432 33333322222222212222 3334455555555442 34444444444444444444
Q ss_pred HHHHHHhcC----C--------CCCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 011905 256 LLGEMEKEG----G--------DCSPNVVTY--TSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEG 320 (475)
Q Consensus 256 ~~~~~~~~~----~--------~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~ 320 (475)
++......- . .-+|+...| .-+...|...|++++|++++++..+. .|+ +..|..-.+.+-+.|
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence 444433210 0 011222222 22333444445555555555444443 222 334444444444445
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
++.+|.+.++.....+.. |...-+..+..+.+.|++++|.+++....+
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 555555554444444332 333333344444444555555444444443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-08 Score=95.67 Aligned_cols=242 Identities=17% Similarity=0.101 Sum_probs=176.7
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---CCC-CCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKE---GGD-CSPNVVT-YTSVIQIFCGKGMMKEALGILDRMEAL----- 300 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~----- 300 (475)
+.-..+...+...|...|+++.|+.++....+. ..| ..|.+.+ .+.+...|...+++++|..+|+++...
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 334456677999999999999999999987763 111 1234333 344777889999999999999998642
Q ss_pred C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 011905 301 G-CAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG-----GSV-SS-GGCYSSLVVELVRTKRLKEAEKLFSKMLAS- 370 (475)
Q Consensus 301 ~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 370 (475)
| ..| -..+++.|..+|.+.|++++|...++...+- +.. |. ...++.+...++..+++++|..+++...+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 2 111 2356777888899999999999888876531 111 11 234677788899999999999999877642
Q ss_pred --CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 371 --GVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIG----FL-SSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 371 --~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
-..++ ..+++.|-..|...|++++|+++++++.... .. ..-....++.+...|.+.+++.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 12222 3578899999999999999999999987641 11 1112456788889999999999999998876
Q ss_pred HHc----CC--CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 440 LKK----RI--WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 440 ~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
... |. +....+|..|...|...|++|.|.++..
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 643 32 2333578899999999999999998753
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.1e-08 Score=89.35 Aligned_cols=284 Identities=13% Similarity=0.089 Sum_probs=194.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHH
Q 011905 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170 (475)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 170 (475)
.++......-.+.+-...++++..++.+...+.. ++....+..=|..+...|+..+-..+=.++++.- |..+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhH
Confidence 3455555555666677778888888888777654 6666666666777777777776666666666542 4466778888
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcC
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g 248 (475)
..-|.-.|+..+|.+.|.+....+ +.=...|-.+...|+-.|..|.|...+....+. |.- -+..| +.--|.+.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 777777788888888887765332 222456777778888888888888777766552 221 11122 334567778
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C--CCCCHHHHHHHHHHHHhcCCH
Q 011905 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----G--CAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~--~~p~~~~~~~li~~~~~~~~~ 322 (475)
.++.|.++|.+.... .|.|+...+-+.......+.+.+|..+|+..... + ...-..+++.|-.+|.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai---~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI---APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred cHHHHHHHHHHHHhc---CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 888888888887763 2566777777777777778888888888766521 0 111334567777788888888
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011905 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
++|+..++..+..... +..++.++.-.|...|+++.|.+.|.+.+ .+.|+..+...++..+
T Consensus 472 ~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 8888888887765543 66778888888888888888888888777 4577776666666543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-06 Score=81.02 Aligned_cols=167 Identities=11% Similarity=0.072 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----------C-
Q 011905 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPN-VVTYTSVIQIFCGKGMMKEALGILDRMEALGCA----------P- 304 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~----------p- 304 (475)
|..+.+.|-..|+++.|..+|++..+-..+...+ ..+|......-.+..+++.|+++++......-. |
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv 469 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV 469 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence 4556666777777777777777776632110001 234444445555666777777766655422111 0
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 011905 305 ------NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-L 377 (475)
Q Consensus 305 ------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~ 377 (475)
+...|...++.--..|-++....+++.+++..+..... .-.....+..+.-++++.++|++-+..=..|+. .
T Consensus 470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi-i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~d 548 (835)
T KOG2047|consen 470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI-IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYD 548 (835)
T ss_pred HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHH
Confidence 12223344444444556666666666666554432111 111111223334445555555543322112332 2
Q ss_pred HHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 011905 378 ACSVMIRELCL---GGQVLEGFCLYEDIEK 404 (475)
Q Consensus 378 ~~~~li~~~~~---~g~~~~a~~~~~~~~~ 404 (475)
.|+..+.-+.+ ...++.|+.+|++..+
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 33333332221 2255666666666666
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-06 Score=78.00 Aligned_cols=319 Identities=13% Similarity=0.043 Sum_probs=222.8
Q ss_pred cCCccCHHhHHHHHHHHHhc--CCHHHHHHHHHhccc-CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh
Q 011905 123 EGCVVSVKMMKVIFNLCEKA--RLANEAMWVLRKMPE-FDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI 199 (475)
Q Consensus 123 ~~~~~~~~~~~~li~~~~~~--~~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 199 (475)
...+|...+...-+.++++. ++-..|.+.+-.+.. .-++-|+.....+...+...|+.++|...|++....+ |+.
T Consensus 188 ~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~ 265 (564)
T KOG1174|consen 188 ATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDN 265 (564)
T ss_pred eecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhh
Confidence 34455555555555555443 333344444333322 2345678888999999999999999999999987543 432
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011905 200 -ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 200 -~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
.......-.+.+.|+.+....+...+.... +-+...|-.-.......++++.|+.+.++.++.+ +.+...|-.-.
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~---~r~~~alilKG 341 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE---PRNHEALILKG 341 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC---cccchHHHhcc
Confidence 233334445567888888888877776542 1234445555556667789999999999998853 35566666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-HHHH-hcCC
Q 011905 279 QIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV-VELV-RTKR 356 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~ 356 (475)
..+...|++++|.--|+...... +-+...|..|+.+|...|++.+|.-+-+...+.- ..+..+...+. ..+. ...-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~ 419 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRM 419 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchh
Confidence 78889999999999999887642 3467899999999999999999988777665431 12333333331 1121 2223
Q ss_pred HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011905 357 LKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
-++|.++++...+. +|+. ...+.+...|...|..+++..+++...... +|....+.|.+.+...+.+.+|++.
T Consensus 420 rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~----~D~~LH~~Lgd~~~A~Ne~Q~am~~ 493 (564)
T KOG1174|consen 420 REKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF----PDVNLHNHLGDIMRAQNEPQKAMEY 493 (564)
T ss_pred HHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc----cccHHHHHHHHHHHHhhhHHHHHHH
Confidence 47899999887744 6764 455666677888999999999999988753 3888999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHH
Q 011905 436 ARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 436 ~~~m~~~~~~~~~~~~~~l~~ 456 (475)
|..++..+ |.+..+..-+-.
T Consensus 494 y~~ALr~d-P~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 494 YYKALRQD-PKSKRTLRGLRL 513 (564)
T ss_pred HHHHHhcC-ccchHHHHHHHH
Confidence 99999887 666666655433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-07 Score=84.62 Aligned_cols=359 Identities=13% Similarity=0.008 Sum_probs=241.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccC-HHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC-HhhHHHHHHHHHhcCC
Q 011905 102 EMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-TIIYNNVIRLFCEKGD 179 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~ 179 (475)
..+-+.++++.|++.+...... .|+ +..|.....+|...|+|+++.+--.+..+. .|+ +..+..-.+++-..|+
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~ 198 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGK 198 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhcc
Confidence 4566788999999999998875 567 677777888999999999999888888775 354 3466667778888899
Q ss_pred hhHHHHHH------HHh-------------------------ccCC--CCCChhhHHHHHHHHHhc-----------CC-
Q 011905 180 MIAADELM------KGM-------------------------GLID--LYPDIITYVSMIKGFCNA-----------GR- 214 (475)
Q Consensus 180 ~~~a~~~~------~~m-------------------------~~~~--~~~~~~~~~~li~~~~~~-----------~~- 214 (475)
+++|+.=+ +.. .+.+ +-|+....++....+... ++
T Consensus 199 ~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa 278 (606)
T KOG0547|consen 199 FDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDA 278 (606)
T ss_pred HHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchh
Confidence 98876532 111 1001 223333333333332210 00
Q ss_pred -HHHHHHHHHHHHHCCC----------------Cc-----CH------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q 011905 215 -LEDACGLFKVMKRHGC----------------AA-----NL------VAYSALLDGICRLGSMERALELLGEMEKEGGD 266 (475)
Q Consensus 215 -~~~a~~~~~~m~~~g~----------------~~-----~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 266 (475)
..++.+.+..-...|. .+ |. .+...-...+.-.|+.-.|..-|+..+...
T Consensus 279 ~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~-- 356 (606)
T KOG0547|consen 279 ALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD-- 356 (606)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--
Confidence 1122221111111110 01 11 111111122334688889999999988742
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011905 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346 (475)
Q Consensus 267 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (475)
+.+...|--+...|....+.++..+.|......+ +-++.+|..-.+.+.-.+++++|..=|++.+..+.. +...|--
T Consensus 357 -~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQ 433 (606)
T KOG0547|consen 357 -PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQ 433 (606)
T ss_pred -cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHH
Confidence 2222336667778999999999999999998765 336677877778888888999999999999886543 3445655
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCCchhhHHHHHH
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL-----SSVDSDIHSVLLL 421 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~li~ 421 (475)
+.-+..+.+++++++..|++.++. ++--+..|+.....+...++++.|.+.|+...+.-.. ..+...+.-.++.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 666666889999999999999875 3334678888899999999999999999998875311 0011112222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.- -.+++..|..++++.++.. |-....+..+.......|+.++|.++..
T Consensus 513 ~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFE 561 (606)
T KOG0547|consen 513 LQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFE 561 (606)
T ss_pred hc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 22 3489999999999999887 5566778899999999999999987753
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-06 Score=80.48 Aligned_cols=382 Identities=9% Similarity=-0.017 Sum_probs=207.7
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHH--HH--HHHhcCCH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVI--FN--LCEKARLA 145 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~--~~~~~~~~ 145 (475)
..++.+.|++...-... .++.+...+..-+-.+...++++.|+.+++.-. -..+++.. =. +..+.+..
T Consensus 24 ~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred cchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHHHHcccH
Confidence 56777778777665543 334566666666667777788888886665421 11222222 22 33467888
Q ss_pred HHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCC---------------------------C
Q 011905 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYP---------------------------D 198 (475)
Q Consensus 146 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---------------------------~ 198 (475)
++|+..++-... .|..+...-...+.+.|++++|+++|+.+.+++.+- .
T Consensus 96 Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 999998883332 344466666778889999999999999996654211 0
Q ss_pred hhhHHHHHH---HHHhcCCHHHHHHHHHHHHHCC--------CC-cCHHHHHHHH-----HHHHhcCChHHHHHHHHHHH
Q 011905 199 IITYVSMIK---GFCNAGRLEDACGLFKVMKRHG--------CA-ANLVAYSALL-----DGICRLGSMERALELLGEME 261 (475)
Q Consensus 199 ~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g--------~~-~~~~~~~~ll-----~~~~~~g~~~~a~~~~~~~~ 261 (475)
..+|..+.+ .++..|++.+|+++++...+.+ .. -+...=-..| ..+-..|+-++|.+++..+.
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 113333332 2334566666666666652211 00 0111111111 23345566666666666666
Q ss_pred hcCCCCCCcHHHH----HHHHHHHHhcCCHH-HHHHHHHHHH------------H-------------------------
Q 011905 262 KEGGDCSPNVVTY----TSVIQIFCGKGMMK-EALGILDRME------------A------------------------- 299 (475)
Q Consensus 262 ~~~~~~~~~~~~~----~~li~~~~~~g~~~-~a~~~~~~m~------------~------------------------- 299 (475)
+.. ++|.... |.++..-....-.+ .++..++... .
T Consensus 252 ~~~---~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~ 328 (652)
T KOG2376|consen 252 KRN---PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE 328 (652)
T ss_pred Hhc---CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 643 2333221 11211110000000 0000000000 0
Q ss_pred --cCCCCC--HHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------
Q 011905 300 --LGCAPN--RVTISTLIKGFCV--EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS-------- 365 (475)
Q Consensus 300 --~~~~p~--~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~-------- 365 (475)
...++. ...+.+++..+.+ ......+.+++...-+....-...+.-.++......|+++.|.+++.
T Consensus 329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 001111 1122233322221 12344555555555444333234455566777788899999999988
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI----HSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.+.+.+..| .+...+...+.+.++-+.|..++.+....-......... +..++..-.+.|+-++|..+++++.+
T Consensus 409 s~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 409 SILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 555444444 445556666777777777888877776531111112222 33334444578999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 442 KRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
.. ++|..+...++.+|++.. .+.|+.+
T Consensus 487 ~n-~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 487 FN-PNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred hC-CchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 87 899999999999988764 5555444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-07 Score=87.44 Aligned_cols=283 Identities=13% Similarity=0.032 Sum_probs=216.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+......-.+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+=..+.+.- +-...+|-++..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 34444445556777889999999999988765 6777777777888889999888777777887763 446788999998
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcC
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~ 320 (475)
-|.-.|+.++|.+.|.+....+. .=...|-.+...|+-.|..+.|+..+...-+. |.. -+..| +---|.+.+
T Consensus 321 YYl~i~k~seARry~SKat~lD~---~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~ 394 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDP---TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTN 394 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCc---cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhc
Confidence 89999999999999999877432 23457888899999999999999988776543 211 11222 233577889
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHhcCCHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GV---K-PDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~---~-p~~~~~~~li~~~~~~g~~~~ 394 (475)
+++.|.+.|.+.....+ .|+...+-+.......+.+.+|...|+..+.. .+ . --..+++.|-.+|.+.+..++
T Consensus 395 n~kLAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 99999999998876432 25667777777777889999999999887631 11 1 134568888899999999999
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
|+..+++..... +.+..+|..+...|...|+++.|.+.|.+.+-.. |+..+...++..+.
T Consensus 474 AI~~~q~aL~l~---~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~--p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 474 AIDYYQKALLLS---PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK--PDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHcC---CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CccHHHHHHHHHHH
Confidence 999999999875 3488999999999999999999999999998664 66555555444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.9e-07 Score=84.78 Aligned_cols=204 Identities=12% Similarity=0.017 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-APNR--VTISTL 312 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~l 312 (475)
....+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+++...... .|+. ..|..+
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 33344555666666666666666666632 33445555566666666666666666666554321 1221 234455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHhcCCHHHHHHH--H-HHHHHCCC-CCCHHHHHHHHH
Q 011905 313 IKGFCVEGNLDEAYQLIDKVVAGGS-VSSGGCY-S--SLVVELVRTKRLKEAEKL--F-SKMLASGV-KPDGLACSVMIR 384 (475)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~g~~~~A~~~--~-~~m~~~~~-~p~~~~~~~li~ 384 (475)
...+...|++++|..++++...... .+..... + .++.-+...|..+.+.+. + ........ ............
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~ 272 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAAL 272 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHH
Confidence 6666667777777777766643322 1111111 1 122222233322222221 1 11111100 111112224555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC------CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 385 ELCLGGQVLEGFCLYEDIEKIGFL------SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
++...|+.+.|..+++.+...... ........-....++...|++++|.+.+...+..
T Consensus 273 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 273 ALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 667788888888888887663221 0001222222333445789999999998887765
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-07 Score=83.57 Aligned_cols=198 Identities=11% Similarity=-0.056 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
..|..+...|.+.|++++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.. +-+..++..+..
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~ 140 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR---PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGI 140 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 345555556666666666666666666532 3345666666666666666666666666666542 113445555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
++...|++++|.+.++...+.+... . ........+...++.++|...+.+..... .|+...+ .+ .....|+...
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~-~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPND-P-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCC-H-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCH
Confidence 6666667777777666666544321 1 11111112234556777777775544321 2222111 11 1223444433
Q ss_pred HHHHHHHHHHcCCC-C---CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 395 GFCLYEDIEKIGFL-S---SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 395 a~~~~~~~~~~~~~-~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+ +.++.+.+..-. + +.....|..+...+.+.|++++|...|++.+..+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3 233333321100 0 0133567777777888888888888888887776
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.2e-07 Score=85.71 Aligned_cols=217 Identities=17% Similarity=0.039 Sum_probs=115.9
Q ss_pred CHHHHHHHHHhcccCC-CCC--CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 144 LANEAMWVLRKMPEFD-LRP--DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 144 ~~~~A~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 220 (475)
..+.++.-+.++.... ..| ....|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445555555554321 111 13345666666667777777777777666543 3445666777777777777777777
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.|+...+... -+..++..+..++...|++++|.+.|+...+.. |+..........+...++.++|.+.|++....
T Consensus 120 ~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD----PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 7777666432 245566666666677777777777777766642 32211122222233456677777777554432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG---GS--VS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 301 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 371 (475)
. .|+... ..+ .....|+...+ ..++.+.+. .+ .| ...+|..+...+.+.|++++|...|++..+.+
T Consensus 195 ~-~~~~~~-~~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 L-DKEQWG-WNI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred C-CccccH-HHH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 1 222211 112 22233444333 233333321 11 01 12456667777777777777777777776553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-07 Score=77.66 Aligned_cols=194 Identities=13% Similarity=0.077 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 011905 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF 316 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 316 (475)
...+.-+|...|+...|.+-+++..+.. +.+..+|..+...|-+.|+.+.|.+.|+...+.. +-+....|..-..+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3444555556666666666666655532 2334455555555555666666666665555432 11233444444455
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 395 (475)
|..|++++|...|+.......-+ ...+|..+.-+..+.|+.+.|.+.|++.++... -...+...+.+.....|++..|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHH
Confidence 55555555555555555432211 123455555555555555555555555554321 1123344444445555555555
Q ss_pred HHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 396 FCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
..+++.....+. + ........|+.--+.|+.+.+-++=..
T Consensus 193 r~~~~~~~~~~~-~--~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 193 RLYLERYQQRGG-A--QAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHHHhccc-c--cHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 555555555443 2 444444444444455555555444333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-07 Score=75.00 Aligned_cols=194 Identities=14% Similarity=0.073 Sum_probs=91.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
|.-+|...|+...|..-+++.++.. +.+..+|..+...|.+.|+.+.|.+-|++..+.. +-+..+.|.....+|..
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~---p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA---PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC---CCccchhhhhhHHHHhC
Confidence 3344445555555555555554442 1133444445555555555555555555554432 23344444444555555
Q ss_pred CCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 285 GMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (475)
|++++|...|++....-. .--..+|..+.-+..+.|+.+.|...|++.++.+..- ....-.+.....+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF-PPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-ChHHHHHHHHHHhcccchHHHHH
Confidence 555555555554443211 1112344444444445555555555555555443321 22244444445555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++.....+. ++..+.-..|+.-...|+.+.+-++=..+.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555544432 4555555555544555555555544444444
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.2e-06 Score=78.46 Aligned_cols=374 Identities=11% Similarity=-0.005 Sum_probs=236.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCC-CHhhH
Q 011905 89 SYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-DTIIY 167 (475)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~ 167 (475)
.+.-+...|..+.-.+.+.|+++.+.+.|++.... ..-..+.|+.+-..+...|.-..|+.+++.-......| |...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 44456777888888888888888888888887653 34456677777777888888888888888765433223 33333
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHhcc--CCC--CCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCC-
Q 011905 168 NNVIRLFC-EKGDMIAADELMKGMGL--IDL--YPDIITYVSMIKGFCNA-----------GRLEDACGLFKVMKRHGC- 230 (475)
Q Consensus 168 ~~ll~~~~-~~g~~~~a~~~~~~m~~--~~~--~~~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~- 230 (475)
-..-..|. +.|.+++++++-.+... .+. ......|..+.-+|... ....++++.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333333 34566666666555544 111 12233344443333321 124567778887777543
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC------
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA-LGCA------ 303 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~------ 303 (475)
.|++..| +.--|+..++++.|.+...+..+.+ -..+...|..+.-.+...+++.+|+.+.+.... .|..
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~--~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~ 552 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALN--RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDG 552 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchh
Confidence 3433333 3344677788999999999888852 246778888888888888999999988876543 2210
Q ss_pred ------------CCHHHHHHHHHHHHhc---------C--------------CHHHHHHHHHHHH--------hCC----
Q 011905 304 ------------PNRVTISTLIKGFCVE---------G--------------NLDEAYQLIDKVV--------AGG---- 336 (475)
Q Consensus 304 ------------p~~~~~~~li~~~~~~---------~--------------~~~~a~~~~~~~~--------~~~---- 336 (475)
....|...++..+-.. | +..++.+....+. ..+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 0011222222222100 0 0111111111100 000
Q ss_pred -----CC--CC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 337 -----SV--SS------GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403 (475)
Q Consensus 337 -----~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (475)
.. |+ ...|......+.+.+..++|.-.+.+..+.. .-....|...-..+...|..++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 00 11 1234455666777888888887777776432 2234555555566778899999999998888
Q ss_pred HcCCCCCCchhhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK--LARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 404 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+ +.++.....+...+.+.|+..-|.. ++.++.+.+ +.+...|..+...+.+.|+.+.|.+..+
T Consensus 712 ~ld---P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 712 ALD---PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hcC---CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 764 3467888999999999998888888 999999999 8999999999999999999999877654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.8e-06 Score=79.71 Aligned_cols=302 Identities=13% Similarity=0.007 Sum_probs=181.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDI-ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
...|..+...+...|+.+.+.+.+........ .++. .........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 34555566666667777776666655443221 1121 112222334567889999999999888763 224444442 2
Q ss_pred HHHH----hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011905 242 DGIC----RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317 (475)
Q Consensus 242 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 317 (475)
..+. ..+..+.+.+.+..... ..+........+...+...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~ 159 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP---ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLE 159 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc---CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 2222 24555566665554211 112334445566678889999999999999998864 335667788888999
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcC
Q 011905 318 VEGNLDEAYQLIDKVVAGGSV-SSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPDGLAC-S--VMIRELCLGG 390 (475)
Q Consensus 318 ~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g 390 (475)
..|++++|...+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 999999999999998875432 222 3455788889999999999999999864322 1122111 1 2233334444
Q ss_pred CHHHHHHHHHHHHHc---CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CChhhHHHHHHHHH
Q 011905 391 QVLEGFCLYEDIEKI---GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW--------LQGPYVDKIVEHLK 459 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------~~~~~~~~l~~~~~ 459 (475)
..+.+.+. +.+... ................++...|+.++|.++++.+...... ......-....++.
T Consensus 240 ~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~ 318 (355)
T cd05804 240 HVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAF 318 (355)
T ss_pred CCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHH
Confidence 43333322 222221 1000011122235667778899999999999998764322 11222234445667
Q ss_pred hcCCHhHHhhccc
Q 011905 460 KSGDEELITNLPK 472 (475)
Q Consensus 460 ~~g~~~~a~~l~~ 472 (475)
..|+.+.|.+++.
T Consensus 319 ~~g~~~~A~~~L~ 331 (355)
T cd05804 319 AEGNYATALELLG 331 (355)
T ss_pred HcCCHHHHHHHHH
Confidence 8899999987764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.4e-06 Score=74.46 Aligned_cols=272 Identities=11% Similarity=-0.015 Sum_probs=201.2
Q ss_pred CCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhH
Q 011905 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202 (475)
Q Consensus 124 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 202 (475)
..+-++.....+...+...|+.++|+..|+...-.+ |+. .......-.+.+.|+.+....+...+.... .-....|
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w 303 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW 303 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence 346677888889999999999999999999877543 322 222222334557888888888877776432 2334445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
-.-.......++++.|+.+-+..++... .+...|-.-...+...|+.++|.-.|+...... |-+...|.-++..|.
T Consensus 304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 304 FVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHHH
Confidence 5555556677889999999998887642 255666666677889999999999999887742 457889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 283 GKGMMKEALGILDRMEALGCAPNRVTISTLI-KGFC-VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
..|...+|.-+-+..... ++.+..+.+.+- ..+. ....-++|.++++.-....+.- ....+.+...+...|+.+++
T Consensus 380 A~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y-~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY-TPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred hhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc-HHHHHHHHHHHHhhCccchH
Confidence 999999998877655433 233455554441 2222 2334578888988877654332 34567788888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
+.++++.... .||....+.|.+.+...+.+++|...|....+.+
T Consensus 458 i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 458 IKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999999865 8999999999999999999999999999988864
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=4e-06 Score=73.21 Aligned_cols=340 Identities=12% Similarity=0.028 Sum_probs=175.6
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 011905 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 185 (475)
+.|+.++|...+..+.... .++.+.+..|.-.+.-.|.+.+|.++-.+..+ ++..-..|.....+.++-++...
T Consensus 69 hLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 69 HLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred hhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHH
Confidence 4577777777776665544 44444444444444445667777766665543 33334445555556666666665
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhcC
Q 011905 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL-DGICRLGSMERALELLGEMEKEG 264 (475)
Q Consensus 186 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~ 264 (475)
+-+.+... ..---+|.......-.+.+|.+++.+.... .|+....|..+ -+|.+..-++-+.+++.-..++
T Consensus 143 fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q- 214 (557)
T KOG3785|consen 143 FHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ- 214 (557)
T ss_pred HHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-
Confidence 55555421 122223344433444577888888887765 34555555443 4566777777788888777664
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------------------CCC-----HHHHHHHH
Q 011905 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC--------------------------APN-----RVTISTLI 313 (475)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------------------~p~-----~~~~~~li 313 (475)
++.++...|.......+.=.-..|.+-.+++...+- -|. +..-..|+
T Consensus 215 --~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 215 --FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred --CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 234455566555544443222222222222222210 010 01112334
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcC-------CHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL--VRTK-------RLKEAEKLFSKMLASGVKPDGL-ACSVMI 383 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g-------~~~~A~~~~~~m~~~~~~p~~~-~~~~li 383 (475)
-.|.+.+++.+|..+.+++ .|+.. |.-++.+. +..| ...-|.+.|.-.-+.+..-|.. --.++.
T Consensus 293 iYyL~q~dVqeA~~L~Kdl-----~PttP-~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDL-----DPTTP-YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred eeecccccHHHHHHHHhhc-----CCCCh-HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 4566778888887776554 22211 33333332 2222 2334555554433333332221 122333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011905 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
.++.-..++++.+.+++.+...-. ..|...| .+..+++..|++.+|.++|-......++.+......+.++|.+.|.
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~--NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFT--NDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 334444566666666666665432 1122222 3556667777777777777666555555555555566667777777
Q ss_pred HhHHhhc
Q 011905 464 EELITNL 470 (475)
Q Consensus 464 ~~~a~~l 470 (475)
.+.|.++
T Consensus 444 P~lAW~~ 450 (557)
T KOG3785|consen 444 PQLAWDM 450 (557)
T ss_pred chHHHHH
Confidence 6666544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-05 Score=72.69 Aligned_cols=380 Identities=12% Similarity=0.064 Sum_probs=236.8
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|+..++...+. -..+..-|+.+.-+....+++++|+..+......+ +-+...+.-+--.-++.|+++...
T Consensus 53 ~lg~~~ea~~~vr~glr~--d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRN--DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred cccchHHHHHHHHHHhcc--CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHH
Confidence 367777788777766542 22345556655556666778888988888887765 556777776666677777887777
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC-CCCChhhHHHHH------HHHHhcCCHHHHHHHH
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID-LYPDIITYVSMI------KGFCNAGRLEDACGLF 222 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li------~~~~~~~~~~~a~~~~ 222 (475)
.......+.. +.....|.....++.-.|+...|..++++..+.. -.|+...+.... ....+.|..++|++.+
T Consensus 130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7777766542 2345667777788888888888888888876644 245655554322 2345667777777776
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH-HHHHhcCCHHHHH-HHHH-----
Q 011905 223 KVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI-QIFCGKGMMKEAL-GILD----- 295 (475)
Q Consensus 223 ~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li-~~~~~~g~~~~a~-~~~~----- 295 (475)
..-... +.-....-..-...+.+.+++++|..++..+.... ||...|...+ .++.+..+..++. .+|.
T Consensus 209 ~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn----Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 209 LDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN----PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC----chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 654433 11122223345567788889999999999888863 6666555443 3443333333333 3333
Q ss_pred -----------------------------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC------
Q 011905 296 -----------------------------RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA----GG------ 336 (475)
Q Consensus 296 -----------------------------~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~------ 336 (475)
.+.+.|+++ ++..+...|-.....+-..++.-.+.. .|
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccc
Confidence 333334332 222333333222222211122211111 11
Q ss_pred ----CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011905 337 ----SVSSG--GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL-ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS 409 (475)
Q Consensus 337 ----~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 409 (475)
-+|+. .++..++..|-..|+++.|...++....+ .|+.. -|..=.+.+...|++++|..++++..+.+.
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-- 436 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-- 436 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc--
Confidence 13333 35567788899999999999999999855 77653 444455778999999999999999999763
Q ss_pred CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--------hHH--HHHHHHHhcCCHhHHh
Q 011905 410 SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP--------YVD--KIVEHLKKSGDEELIT 468 (475)
Q Consensus 410 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--------~~~--~l~~~~~~~g~~~~a~ 468 (475)
+|...-.--..-..++++.++|.++.....+.|. +.. .|- .-..+|.+.|++..|.
T Consensus 437 -aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL 502 (700)
T KOG1156|consen 437 -ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL 502 (700)
T ss_pred -hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH
Confidence 2544443566667789999999999998888774 211 111 2245666666666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-07 Score=78.28 Aligned_cols=193 Identities=10% Similarity=0.012 Sum_probs=100.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHH-HHHHHhc
Q 011905 99 RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV-IRLFCEK 177 (475)
Q Consensus 99 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~ 177 (475)
..+..+.+..++..+++++....++. +.+......+..+|....++..|...|+++... .|...-|... ...+.+.
T Consensus 15 aviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 15 AVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34444455566666666666555543 335555555666666666666666666666543 2444433321 3344556
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHH
Q 011905 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKG--FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
+.+..|+++...|... |+...-..-+.+ ....+|+..+..+.++....| +..+.+.......+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 6666666666666531 222111111121 223455666666665554322 34444444555556666666666
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011905 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 303 (475)
-|+...+-+ |. .....||..+.. .+.|+++.|++...++.+.|++
T Consensus 166 kFqaAlqvs-Gy-qpllAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 166 KFQAALQVS-GY-QPLLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHhhc-CC-CchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 666666532 22 233455544433 3446666666666666666654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-07 Score=84.92 Aligned_cols=224 Identities=12% Similarity=0.110 Sum_probs=109.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH-HHHH
Q 011905 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV-SMIK 207 (475)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~li~ 207 (475)
......+.+++...|+++.++ ..+.+.. .|.......+...+...++-+.++.-+++.......++..++. ....
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 334444556666666654433 3333322 4555555444444433344455555555444333222222222 2223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----Hh
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----CG 283 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~ 283 (475)
.+...|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+.+ .|... ..+..++ .-
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~----eD~~l-~qLa~awv~l~~g 179 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID----EDSIL-TQLAEAWVNLATG 179 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS----CCHHH-HHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CcHHH-HHHHHHHHHHHhC
Confidence 445566677666666432 245555566666667777777777777666521 23222 2222222 22
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHH
Q 011905 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL-KEAEK 362 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~ 362 (475)
...+.+|..+|+++.+. ..+++.+.+.+..+....|++++|.+++.+....+.. +..+...++.+....|+. +.+.+
T Consensus 180 ~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~ 257 (290)
T PF04733_consen 180 GEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAER 257 (290)
T ss_dssp TTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred chhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHH
Confidence 23466666666665443 3455666666666666666666666666665554432 344444555555555555 44555
Q ss_pred HHHHHHH
Q 011905 363 LFSKMLA 369 (475)
Q Consensus 363 ~~~~m~~ 369 (475)
.+.++..
T Consensus 258 ~l~qL~~ 264 (290)
T PF04733_consen 258 YLSQLKQ 264 (290)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 5555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-06 Score=80.43 Aligned_cols=351 Identities=15% Similarity=0.151 Sum_probs=205.8
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------CccCHHhHHHHHHHHHh
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE-G--------CVVSVKMMKVIFNLCEK 141 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~--------~~~~~~~~~~li~~~~~ 141 (475)
.++-+.|++-.... .+...|..+.+.+.+.++.+.|.-.+-.|... | ..++ ++=..+.....+
T Consensus 741 iG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 34555555544333 35567888888888888888777666655421 1 1122 333334445667
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 142 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
.|..++|+.+|.+.++ |..|=..|-..|.+++|.++-+.--+. .=..||.....-+-..+|.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHH
Confidence 8999999999998876 344555667789999999987654322 2245666666777777888888888
Q ss_pred HHHHH----------HCC---------CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 222 FKVMK----------RHG---------CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 222 ~~~m~----------~~g---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
|+... ... -..|...|......+-..|+.+.|+.+|..... |-.++...|
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C 949 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKC 949 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEe
Confidence 77532 110 012333444444555556777777777766543 445666667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-----------
Q 011905 283 GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL----------- 351 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----------- 351 (475)
-.|+.++|-++-++ .| |......|.+.|-..|++.+|...|-+... +...|+.|
T Consensus 950 ~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred eccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHH
Confidence 77777777777554 22 555666777888888888888877766543 22222211
Q ss_pred --HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHcCCCCCCchhhHHHH
Q 011905 352 --VRTK--RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE--------DIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 352 --~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~~~l 419 (475)
...| +.-.|-++|++. |.. +...+..|-++|.+.+|+++-= ++...++.|..|....+..
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 1111 122233333322 211 1122334566666666654421 2333445555567777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHH----------HcCCC----------------CC----hhhHHHHHHHHHhcCCHhHHhh
Q 011905 420 LLGLCRKNHSVEAAKLARFML----------KKRIW----------------LQ----GPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~----------~~~~~----------------~~----~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
.+.++...++++|..++-... .+|++ |+ ...+..+...|.++|.+..|-+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 777777777777766543322 11221 11 1366788889999999988866
Q ss_pred ccccCC
Q 011905 470 LPKIGG 475 (475)
Q Consensus 470 l~~~~g 475 (475)
=...||
T Consensus 1167 KfTQAG 1172 (1416)
T KOG3617|consen 1167 KFTQAG 1172 (1416)
T ss_pred HHhhhh
Confidence 554443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.5e-08 Score=85.81 Aligned_cols=250 Identities=13% Similarity=0.067 Sum_probs=159.1
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 218 (475)
+--.|++..++.-.+ .....-+.+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344678888886555 322222234455666778888888876544 4444433 66666666665555444555666
Q ss_pred HHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 219 CGLFKVMKRHGCA-ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 219 ~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
+.-+++....+.. .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6555554443333 23333333445667789999998887543 24556667788899999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011905 298 EALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 298 ~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 373 (475)
.+.+ +..+...+..++.. .+++.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+.+ .
T Consensus 158 ~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 8753 33445555555443 24688999999997664 45677888888888999999999999988887653 2
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 011905 374 PDGLACSVMIRELCLGGQV-LEGFCLYEDIEKIG 406 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~ 406 (475)
-+..+...++......|+. +.+.+++.++....
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 2456666777777777776 66778888888753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-05 Score=83.85 Aligned_cols=335 Identities=13% Similarity=-0.008 Sum_probs=202.9
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC--C----CCCh--hhHHHHHHHH
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID--L----YPDI--ITYVSMIKGF 209 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~----~~~~--~~~~~li~~~ 209 (475)
.....|++..+...++.+.......+..........+...|+++++...+......- . .+.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567777777777766432111222233344555667889999988888764321 0 1111 1122233455
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CC--cHHHHHHHHHHHH
Q 011905 210 CNAGRLEDACGLFKVMKRHGCAANL----VAYSALLDGICRLGSMERALELLGEMEKEGGDC-SP--NVVTYTSVIQIFC 282 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~--~~~~~~~li~~~~ 282 (475)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++........ .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6789999999999987663111121 244556667788999999999998876421100 11 1234455666788
Q ss_pred hcCCHHHHHHHHHHHHH----cCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--ChhhHHHHHHHH
Q 011905 283 GKGMMKEALGILDRMEA----LGCA--P-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--SVS--SGGCYSSLVVEL 351 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~~----~~~~--p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~li~~~ 351 (475)
..|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 89999999998877654 2221 1 22334455566777899999999988875431 112 233455566677
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCCCHH--H-H-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-CchhhHHHHHHHHH
Q 011905 352 VRTKRLKEAEKLFSKMLAS--GVKPDGL--A-C-SVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-VDSDIHSVLLLGLC 424 (475)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~--~~~p~~~--~-~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~li~~~~ 424 (475)
...|+.++|.+.+.+.... ....... . . ...+..+...|+.+.|.+.+........... .....+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999988887542 1111110 1 0 1122334557889998888766544211100 00112345677788
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 425 RKNHSVEAAKLARFMLKK----RIWL-QGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..|++++|..++++.... |... ...+...+..++.+.|+.+.|.+.+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~ 755 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLL 755 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999999999888764 3222 22356677888899999988877654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.4e-05 Score=71.05 Aligned_cols=356 Identities=10% Similarity=0.016 Sum_probs=177.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHh-cCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC
Q 011905 101 CEMSRIKQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD 179 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 179 (475)
+..+...++.......|+.... ..+.-....|...+....+.+-++.+..+|++..+. ++..-+--|..+++.++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccc
Confidence 3344444555555555554322 233334456666666666667777777777776652 33335556667777777
Q ss_pred hhHHHHHHHHhccCC------CCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcC
Q 011905 180 MIAADELMKGMGLID------LYPDIITYVSMIKGFCNAGRLE---DACGLFKVMKRHGCAAN--LVAYSALLDGICRLG 248 (475)
Q Consensus 180 ~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g 248 (475)
+++|.+.+....... .+.+...|..+-+..++.-+.- ....+++.+... -+| ...|+.|.+-|.+.|
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhh
Confidence 777777776664421 1233344554444444433322 222333333322 223 245677777777777
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHcC-----
Q 011905 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG----------------------MMKEALGILDRMEALG----- 301 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------------~~~~a~~~~~~m~~~~----- 301 (475)
++++|..+|++..+. ..++.-|+.+.++|+.-. +++-.+.-|+.+....
T Consensus 263 ~~ekarDvyeeai~~----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred hhHHHHHHHHHHHHh----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 777777777776663 234444555555544321 1122222233222211
Q ss_pred ------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 302 ------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS------SGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 302 ------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
-+-+...|..-+ -...|+..+-...+.+.++. +.| -...|..+...|-..|+++.|..+|++..+
T Consensus 339 sVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~ 415 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATK 415 (835)
T ss_pred HHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 011112222111 12234555556666665543 111 134567777777777777777777777765
Q ss_pred CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------CC------chhhHHHHHHHHHhcCCHH
Q 011905 370 SGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS---------SV------DSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 370 ~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~------~~~~~~~li~~~~~~g~~~ 430 (475)
-.. +.. .+|..-...=.+..+++.|+++.+......-.| ++ +...|...++..-..|-++
T Consensus 416 V~y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 416 VPY-KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred CCc-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 432 111 222222222234456666666666554321100 00 2344555555555667777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 431 EAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 431 ~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
....+++++++..+ .++...-.....+.+...++++-++.
T Consensus 495 stk~vYdriidLri-aTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 495 STKAVYDRIIDLRI-ATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 77777777777664 33333333344444444455544443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-05 Score=84.89 Aligned_cols=308 Identities=13% Similarity=0.007 Sum_probs=196.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC----C--CCCC--HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCCh----hhH
Q 011905 135 IFNLCEKARLANEAMWVLRKMPEF----D--LRPD--TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDI----ITY 202 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~m~~~----~--~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~ 202 (475)
....+...|++++|...++...+. + ..+. ......+...+...|+++.|...+++........+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 344556788999999988876432 1 0111 122223344566789999999999987653111121 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCC---CCcHH
Q 011905 203 VSMIKGFCNAGRLEDACGLFKVMKRH----GC-AANLVAYSALLDGICRLGSMERALELLGEMEKEG--GDC---SPNVV 272 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~---~~~~~ 272 (475)
+.+...+...|++++|...+++.... |- .....++..+...+...|++++|...+++..... .+. .....
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 55666778899999999999887642 11 1112345566778889999999999988765521 111 11233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChh--h-
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEAL--GCAP--NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--SVSSGG--C- 343 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~- 343 (475)
.+..+...+...|++++|...+.+.... ...+ ....+..+...+...|+.+.|...++...... ...... .
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 3445566677789999999999876542 1112 23344556667888999999999998875421 111110 0
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhh
Q 011905 344 -YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDI 415 (475)
Q Consensus 344 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~ 415 (475)
....+..+...|+.+.|.+.+............ ..+..+..++...|+.++|...+++.... |... ....+
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~-~~a~~ 733 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS-DLNRN 733 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH-HHHHH
Confidence 011224455688999999998776532111111 11345566788899999999999988764 2211 12345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 416 HSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+..+..++.+.|+.++|.+.+.++++..
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 6667788889999999999999998765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.8e-05 Score=75.38 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
..|..+..+-.+.|...+|.+-|-+. .|+..|.-++....+.|.+++-.+.+...++..-.|... +.|+-
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 34555555555555555554444222 233345555555555555555555554444443333322 24444
Q ss_pred HHHhcCCHHHHH
Q 011905 315 GFCVEGNLDEAY 326 (475)
Q Consensus 315 ~~~~~~~~~~a~ 326 (475)
+|++.+++.+.+
T Consensus 1175 AyAkt~rl~elE 1186 (1666)
T KOG0985|consen 1175 AYAKTNRLTELE 1186 (1666)
T ss_pred HHHHhchHHHHH
Confidence 555555444433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.5e-06 Score=85.79 Aligned_cols=231 Identities=14% Similarity=0.114 Sum_probs=184.0
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN---VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRV 307 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 307 (475)
+-+...|-..|......++.++|.++++++... .++... ...|.++++.-...|.-+...++|+++.+.. . .-.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHH
Confidence 335677888899999999999999999998874 222221 2357777777777888889999999998863 1 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSVMIR 384 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~ 384 (475)
.|..|...|.+.+++++|.++++.|.++-- .....|...+..+.++++-+.|..++.+.++. -|. .......+.
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHH
Confidence 688999999999999999999999988643 45678999999999999999999999999875 444 233344444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh--hHHHHHHHHHhcC
Q 011905 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP--YVDKIVEHLKKSG 462 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~g 462 (475)
.-.+.|+.+.++.+|+....... -....|+.+++.-.++|+.+.+..+|++.+..++.+-.. .|...++.-.+.|
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayP---KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYP---KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCc---cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 55678999999999999998752 367889999999999999999999999999998766543 5677888888888
Q ss_pred CHhHHhhc
Q 011905 463 DEELITNL 470 (475)
Q Consensus 463 ~~~~a~~l 470 (475)
+-+.++.+
T Consensus 1686 de~~vE~V 1693 (1710)
T KOG1070|consen 1686 DEKNVEYV 1693 (1710)
T ss_pred chhhHHHH
Confidence 87776654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-06 Score=79.59 Aligned_cols=248 Identities=16% Similarity=0.118 Sum_probs=186.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHH
Q 011905 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (475)
+.+.|++.+|.=.|+..++... -+...|..|...-...++-..|+..+.+..+.. +-+..+.-.|.-.|...|.-.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhhhHH
Confidence 4578889999999998888753 377888888888888888889999999988853 456777888888889999889
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCC
Q 011905 289 EALGILDRMEALGCAPNRVTISTLI-----------KGFCVEGNLDEAYQLIDKVV-AGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li-----------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
.|++.++.-.....+ |..+. ..+.....+.+..++|-++. ..+..+|..+...|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999998877554211 00000 11112223444555555554 44545778888999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011905 357 LKEAEKLFSKMLASGVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
+++|.+.|+.++.. +| |...||.|-..++...+.++|+.-|++.++.. |. -+.+...|..+|...|.+++|.+.
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~-yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PG-YVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CC-eeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999865 55 56889999999999999999999999999863 42 456677788899999999999999
Q ss_pred HHHHHHcC---------CCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 436 ARFMLKKR---------IWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 436 ~~~m~~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
|-.++... ..++..+|..|-.++.-.++.+.+.+.
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 87766431 112346888888888888888855544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.7e-05 Score=74.04 Aligned_cols=249 Identities=16% Similarity=0.134 Sum_probs=159.5
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a 218 (475)
+...+-+++|..+|++.. .+....+.|+. .-+..++|.++-++.. ....|..+..+-.+.|...+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 334444555555555432 23333333333 2345556665555432 356788888888888888888
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 219 CGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.+-|-+. -|+..|..+++...+.|.|++-.+.+....+... .|. .=+.+|-+|++.++..+..+++
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~--E~~--id~eLi~AyAkt~rl~elE~fi---- 1189 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR--EPY--IDSELIFAYAKTNRLTELEEFI---- 1189 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc--Ccc--chHHHHHHHHHhchHHHHHHHh----
Confidence 7665432 3777899999999999999999998877766432 233 3456888999998887766554
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011905 299 ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 299 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 378 (475)
..||......+-+-|...+.++.|.-+|..... |..|...+...|++..|.+.-++. -+..|
T Consensus 1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN---------~a~La~TLV~LgeyQ~AVD~aRKA------ns~kt 1251 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN---------FAKLASTLVYLGEYQGAVDAARKA------NSTKT 1251 (1666)
T ss_pred ---cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh---------HHHHHHHHHHHHHHHHHHHHhhhc------cchhH
Confidence 247777777888888888889888888766532 778888888888888887766654 24567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
|.-+-.+|...+.+.-|. |-..++. ....-..-++.-|-..|-+++.+.+++..+
T Consensus 1252 WK~VcfaCvd~~EFrlAQ-----iCGL~ii--vhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLAQ-----ICGLNII--VHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHHHhchhhhhHHH-----hcCceEE--EehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 777777776666554332 2222221 133334555555666666666655555443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00017 Score=69.83 Aligned_cols=341 Identities=15% Similarity=0.065 Sum_probs=220.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCcc-CHHhHHHHHHHHHh-cCCHHHHHHHHHhcccC--CC--CCCHhh
Q 011905 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVV-SVKMMKVIFNLCEK-ARLANEAMWVLRKMPEF--DL--RPDTII 166 (475)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~--~~--~~~~~~ 166 (475)
..+.|......+...+.-..|..+++......-.| +...+-..-..|.+ .+.++++++.-.+..+. +. ......
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 44556666556666777788888888765544234 34444444445554 46667776666655541 11 123445
Q ss_pred HHHHHHHHHhc-----------CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHH
Q 011905 167 YNNVIRLFCEK-----------GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 167 ~~~ll~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
|..+.-+|... ....++++.+++..+.+ +.|......+.--|+..++++.|.+..++..+-+-.-+..
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~ 514 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAK 514 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHH
Confidence 55555555432 12456788888886654 2333333334445677889999999999999986667899
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------------
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME----------------- 298 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----------------- 298 (475)
.|..+.-.+...+++.+|+.+.+.....- + .|-.....-+..-...++.++++.....+.
T Consensus 515 ~whLLALvlSa~kr~~~Al~vvd~al~E~-~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~ 591 (799)
T KOG4162|consen 515 AWHLLALVLSAQKRLKEALDVVDAALEEF-G--DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGK 591 (799)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHh-h--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhh
Confidence 99999999999999999999999877641 1 111111111111111222222222211110
Q ss_pred ----------------------------------HcC---------CC--CC------HHHHHHHHHHHHhcCCHHHHHH
Q 011905 299 ----------------------------------ALG---------CA--PN------RVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 299 ----------------------------------~~~---------~~--p~------~~~~~~li~~~~~~~~~~~a~~ 327 (475)
..| +. |+ ...|......+.+.+..++|..
T Consensus 592 ~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~ 671 (799)
T KOG4162|consen 592 LLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARS 671 (799)
T ss_pred hhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 000 00 11 1122344456667778888887
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHH
Q 011905 328 LIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFC--LYEDIEK 404 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~--~~~~~~~ 404 (475)
.+.+.....+. ....|......+...|+..+|.+.|...... .|+ .....++...+.+.|+...|.. ++.++.+
T Consensus 672 CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 672 CLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 77776654422 4556777777788889999999999988854 565 4677888889999998887777 9999999
Q ss_pred cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 405 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+ +.+...|..+...+-+.|+.+.|.+.|+......
T Consensus 749 ~d---p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 749 LD---PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hC---CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 87 3488999999999999999999999999988764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=0.00011 Score=64.20 Aligned_cols=297 Identities=13% Similarity=0.056 Sum_probs=170.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHH-HHHHHHhcC
Q 011905 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS-MIKGFCNAG 213 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~~ 213 (475)
+-..+...|++..|+.-|...++.+ +.+-.++-.-...|...|+-..|+.=+....+. +||-..-.. -...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3444445555566666555555421 111112222233455555555555555554432 344332211 122344566
Q ss_pred CHHHHHHHHHHHHHCCCCc--CH------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 214 RLEDACGLFKVMKRHGCAA--NL------------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~--~~------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
.++.|..=|+...+....- .. ......+..+.-.|+...|+.....+.+- .+-|...|..-..
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi---~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI---QPWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc---CcchhHHHHHHHH
Confidence 6666666666555542100 00 11123344455677888888888877773 2456777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh----HHHH--------
Q 011905 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC----YSSL-------- 347 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l-------- 347 (475)
+|...|.+..|+.=++...+.. ..++.++..+-..+...|+.+.++...++.++.+ ||... |-.|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHH
Confidence 7888888888777666655443 2345555566667777788888877777777644 33221 1111
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 348 -VVELVRTKRLKEAEKLFSKMLASGVKPDGL---ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 348 -i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+......+++.++++..+...+........ .+..+-.++...|++.+|++...+..+.. +.|..++.--..+|
T Consensus 275 s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d---~~dv~~l~dRAeA~ 351 (504)
T KOG0624|consen 275 SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID---PDDVQVLCDRAEAY 351 (504)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC---chHHHHHHHHHHHH
Confidence 122345567777777777776653221122 23344455566788888888888888754 23677787778888
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011905 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
.-...+++|+.-|+.+.+.+
T Consensus 352 l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 352 LGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 88888888888888887665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.6e-06 Score=77.49 Aligned_cols=327 Identities=15% Similarity=0.099 Sum_probs=179.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhH
Q 011905 88 SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIY 167 (475)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~ 167 (475)
.+++.-...-...++.+...++-+.|-++-+. +..+ -+.|..|.+.|.+..|...-..-.. +..|....
T Consensus 583 ~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s--------dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il 651 (1636)
T KOG3616|consen 583 KGHPALEKLKRSYLQALMDTGQDEKAAELKES--------DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEIL 651 (1636)
T ss_pred cCChHHHHHHHHHHHHHHhcCchhhhhhhccc--------cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHH
Confidence 34443333334455666667776666554221 1112 2357778888877776654432211 23466666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH----------------HHCCCC
Q 011905 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVM----------------KRHGCA 231 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m----------------~~~g~~ 231 (475)
..+..++.+..-+++|-.+|+++.. |+ ..+..|-+-+-+.+|.++-+-. ...| +
T Consensus 652 ~~ia~alik~elydkagdlfeki~d----~d-----kale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~-q 721 (1636)
T KOG3616|consen 652 EHIAAALIKGELYDKAGDLFEKIHD----FD-----KALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIG-Q 721 (1636)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHhhC----HH-----HHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHH-h
Confidence 6666666666666666666666542 11 1122222211222332222111 0000 0
Q ss_pred cC--------HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011905 232 AN--------LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA 303 (475)
Q Consensus 232 ~~--------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 303 (475)
.| .......+.+......|.+|+.+++.+..+. .-..-|..+...|...|+++.|.++|-+.-
T Consensus 722 ~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk----~~s~yy~~iadhyan~~dfe~ae~lf~e~~----- 792 (1636)
T KOG3616|consen 722 LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQK----TASGYYGEIADHYANKGDFEIAEELFTEAD----- 792 (1636)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhc----cccccchHHHHHhccchhHHHHHHHHHhcc-----
Confidence 00 0111223444555667777777777776532 233345666777777888887777775432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011905 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI 383 (475)
Q Consensus 304 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 383 (475)
.++-.|..|.+.|+++.|.++-++.. |.......|-+-..-+-.+|++.+|.++|-..- .|+ ..|
T Consensus 793 ----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~ai 857 (1636)
T KOG3616|consen 793 ----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAI 857 (1636)
T ss_pred ----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHH
Confidence 24556677778888887777765543 333344556555666667777777777765442 343 235
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011905 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
..|-+.|..+..+++.++-.... -..+...+...|-..|+.++|.+-|-+.. -|...+..|..++-
T Consensus 858 qmydk~~~~ddmirlv~k~h~d~-----l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~l 923 (1636)
T KOG3616|consen 858 QMYDKHGLDDDMIRLVEKHHGDH-----LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASEL 923 (1636)
T ss_pred HHHHhhCcchHHHHHHHHhChhh-----hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhh
Confidence 56677777777666655443321 23455666667777777777777665442 34555666777777
Q ss_pred HhHHhhcccc
Q 011905 464 EELITNLPKI 473 (475)
Q Consensus 464 ~~~a~~l~~~ 473 (475)
++.|.++.+.
T Consensus 924 w~dayriakt 933 (1636)
T KOG3616|consen 924 WEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHhc
Confidence 7777777654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=7.8e-06 Score=69.80 Aligned_cols=329 Identities=12% Similarity=0.072 Sum_probs=227.1
Q ss_pred cCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhH
Q 011905 123 EGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITY 202 (475)
Q Consensus 123 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~ 202 (475)
.|+.....-+.+++..+.+..+++.|++++..-.+.. +.+......|..+|....++..|-+.++++... .|...-|
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qY 80 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQY 80 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHH
Confidence 3445555667888888899999999999999887764 237788889999999999999999999999754 4666666
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 203 VSM-IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL--DGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 203 ~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
... ...+.+.+.+..|+++...|... ++...-..-+ ......+++..+..++++....+ +..+.+....
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en-----~Ad~~in~gC 152 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN-----EADGQINLGC 152 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC-----ccchhccchh
Confidence 533 45667889999999999888653 2322222222 23445788999999888876532 4455555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-----------------
Q 011905 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG----------------- 342 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------- 342 (475)
...+.|++++|.+-|+...+.+---....|+..+. ..+.++++.|++...+++++|+...+.
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 67799999999999998887544444567776664 456789999999999999998764211
Q ss_pred -----------hHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 343 -----------CYSSLVVELVRTKRLKEAEKLFSKMLAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410 (475)
Q Consensus 343 -----------~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 410 (475)
.+|.-...+.+.|+++.|.+.+..|.-+ .-..|+.|...+.-. ...+++.+..+-+.-+.+.+.
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP--- 307 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP--- 307 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC---
Confidence 1333333456778899998888888532 234566776554322 234567777777777776643
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhc-CCHhHHh
Q 011905 411 VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIW-LQGPYVDKIVEHLKKS-GDEELIT 468 (475)
Q Consensus 411 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~-g~~~~a~ 468 (475)
....||..++..||++.-++-|-.++-+--..-.+ .++-.|+ +++++.-. -..|++.
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~ 366 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAF 366 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHH
Confidence 35689999999999999999998887664433322 3333333 34444333 3344443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-08 Score=56.97 Aligned_cols=32 Identities=34% Similarity=0.621 Sum_probs=15.2
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHh
Q 011905 159 DLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190 (475)
Q Consensus 159 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 190 (475)
|++||..+||+||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-06 Score=81.48 Aligned_cols=306 Identities=14% Similarity=0.077 Sum_probs=182.4
Q ss_pred ccCHHhHHHHHH--HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccC-C--------
Q 011905 126 VVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLI-D-------- 194 (475)
Q Consensus 126 ~~~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~-------- 194 (475)
.-|..|-..+++ .|..-|+.+.|.+-.+.++ +..+|..+.++|.+..+.+-|.-.+-.|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 456777777776 5778899999988887765 4567999999999998888877666665331 1
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH
Q 011905 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTY 274 (475)
Q Consensus 195 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 274 (475)
-.|+ .+=..+.-.....|.+++|+.+|++.++. ..|=..|-..|+|++|.++-+.-.+ . .-..||
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DR--i---HLr~Ty 861 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDR--I---HLRNTY 861 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccc--e---ehhhhH
Confidence 1122 22223333445778899999999887653 3344566778888888887664332 1 122345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----------HcC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011905 275 TSVIQIFCGKGMMKEALGILDRME----------ALG---------CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~----------~~~---------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 335 (475)
.....-+-..++.+.|++.|++.. ... -..|...|......+-..|+.+.|+.+|....+.
T Consensus 862 y~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~ 941 (1416)
T KOG3617|consen 862 YNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY 941 (1416)
T ss_pred HHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh
Confidence 555555566677777777665421 110 1123344555555556678888888887766542
Q ss_pred C--------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 011905 336 G--------------------SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG------ 389 (475)
Q Consensus 336 ~--------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~------ 389 (475)
- -.-|..+...|.+.|...|++.+|..+|.+.. ++...|+.|-..
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHH
Confidence 0 01133445556666666666666666666553 222233222111
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHc--CCCCChhh
Q 011905 390 ---------GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR--------FMLKK--RIWLQGPY 450 (475)
Q Consensus 390 ---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~--~~~~~~~~ 450 (475)
.+.-.|-++|++. | .-+...+..|-+.|.+.+|+++-- +++.. .-..|+..
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~---g-------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEEL---G-------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHc---c-------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 1122222232221 1 113344556778888888877632 22322 33567888
Q ss_pred HHHHHHHHHhcCCHhHHhhcc
Q 011905 451 VDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~l~ 471 (475)
++...+-++...+++.|..++
T Consensus 1083 l~RcadFF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLL 1103 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 888888888888888887765
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00025 Score=66.53 Aligned_cols=321 Identities=14% Similarity=0.140 Sum_probs=191.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCC--------------------
Q 011905 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRP-------------------- 162 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-------------------- 162 (475)
.+-+.+..++|+..++.+. +.+..+...-...|.+.+++++|+++|+.+.+.+.+-
T Consensus 88 c~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~ 163 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL 163 (652)
T ss_pred HHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence 3456788899988887321 2234466666678899999999999999997754211
Q ss_pred -------CHhhHHH---HHHHHHhcCChhHHHHHHHHhccC-------CCCCChhh-------HHHHHHHHHhcCCHHHH
Q 011905 163 -------DTIIYNN---VIRLFCEKGDMIAADELMKGMGLI-------DLYPDIIT-------YVSMIKGFCNAGRLEDA 218 (475)
Q Consensus 163 -------~~~~~~~---ll~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~-------~~~li~~~~~~~~~~~a 218 (475)
...+|.. ....++..|++..|+++++...+. +-.-+... ---+.-.+-..|+.++|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 0112222 234566789999999999988321 11111111 11244456678999999
Q ss_pred HHHHHHHHHCCCCcCHHH----HHHHHHHHHhc---------------------------------------------CC
Q 011905 219 CGLFKVMKRHGCAANLVA----YSALLDGICRL---------------------------------------------GS 249 (475)
Q Consensus 219 ~~~~~~m~~~g~~~~~~~----~~~ll~~~~~~---------------------------------------------g~ 249 (475)
.+++...++.... |... -|.|+..-... +.
T Consensus 244 ~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 244 SSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999887532 3321 12222111000 01
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011905 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFC--GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 327 (475)
.+.+.++.... .+..|.. .+.+++..+. +...+.++.+++...-+....-.....-..+......|+++.|.+
T Consensus 323 ~~q~r~~~a~l----p~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 323 MDQVRELSASL----PGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHHHHHHHHhC----CccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 11111111111 1112222 2333333322 222466777777666554322224455666777889999999999
Q ss_pred HHH--------HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH----HHHhcCCHH
Q 011905 328 LID--------KVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDGLACSVMIR----ELCLGGQVL 393 (475)
Q Consensus 328 ~~~--------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~----~~~~~g~~~ 393 (475)
++. .+.+-+..| .+..+++..+.+.++.+.|..++.+.+.. .-.+......+++. .-.+.|+-+
T Consensus 398 il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 999 555555555 34556677778888877788777776542 11222233333333 234669999
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
+|..+++++.+.. +.|..+...++.+|++. +++.|..+-+.+
T Consensus 476 ea~s~leel~k~n---~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 476 EASSLLEELVKFN---PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHhC---CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999964 35889999999999875 466676665443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-08 Score=56.98 Aligned_cols=28 Identities=36% Similarity=0.871 Sum_probs=10.6
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
.||..+|++||.+|++.|++++|.++|+
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333333333333333333333333333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.3e-06 Score=78.56 Aligned_cols=255 Identities=15% Similarity=0.049 Sum_probs=186.9
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
..-+.+.|++.+|.-.|+...+.+ +-+...|..|.......++-..|+..+++..+... -|....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP-~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDP-TNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhH
Confidence 345678999999999999988766 56788999999999999999999999999998753 3778888899999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHH---------HHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcC
Q 011905 251 ERALELLGEMEKEGGDCSPNVVTYTSVI---------QIFCGKGMMKEALGILDRM-EALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~g~~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~~ 320 (475)
..|.+.++...... +|-. |...- ..+..........++|-++ .+.+..+|......|--.|.-.|
T Consensus 370 ~~Al~~L~~Wi~~~---p~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 370 NQALKMLDKWIRNK---PKYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHHHhC---ccch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 99999999987632 1100 00000 1111222334455555444 45554567777778888888999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLY 399 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~ 399 (475)
++++|.+.|+..+...+. |..+||.|...++...+.++|+..|.+.++. +|+. +..-.|.-+|...|.+++|...|
T Consensus 445 efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 999999999999886543 7789999999999999999999999999965 7774 34445566789999999999988
Q ss_pred HHHHHcCC-------CCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011905 400 EDIEKIGF-------LSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 400 ~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
-......- .|..+..+|..|=.++.-.++.|-+.+.
T Consensus 522 L~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 522 LEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 87664311 1111234676666666666666644443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00017 Score=66.89 Aligned_cols=375 Identities=11% Similarity=0.038 Sum_probs=193.8
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccC-HHhHHHHHHHHHhcCCHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVS-VKMMKVIFNLCEKARLANEA 148 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A 148 (475)
..++.+.|.+.|.-...... ++...|+.-...+...++++.|.+=-...++. .|+ ...|.-...++.-.|++++|
T Consensus 14 s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred ccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHH
Confidence 46777777777766654433 36667777666777777777776554444443 444 35677777777777888888
Q ss_pred HHHHHhcccCCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHhccCC---CCCChhhHHHHHHHHH----------hc
Q 011905 149 MWVLRKMPEFDLRPDTIIYNNVIRLFCEKG---DMIAADELMKGMGLID---LYPDIITYVSMIKGFC----------NA 212 (475)
Q Consensus 149 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~----------~~ 212 (475)
+.-|.+-.+.. +.+...++-+..++.-.. +.-.--.++..+...- .......|..++...- .-
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d 168 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLND 168 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccccc
Confidence 88888777653 234555555555541110 0000000000000000 0000011111111110 00
Q ss_pred CCHHHHHHHHHH-----HHHCC-------CCc----------------------CHHHHHHHHHHHHhcCChHHHHHHHH
Q 011905 213 GRLEDACGLFKV-----MKRHG-------CAA----------------------NLVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 213 ~~~~~a~~~~~~-----m~~~g-------~~~----------------------~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
..+..+...+.. +...| ..| -..-...+.++..+..+++.|.+-+.
T Consensus 169 ~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~ 248 (539)
T KOG0548|consen 169 PRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYA 248 (539)
T ss_pred HHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHH
Confidence 001111111100 00000 000 01112344555555555555555555
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHH
Q 011905 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST-------LIKGFCVEGNLDEAYQLIDK 331 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~~~~~~a~~~~~~ 331 (475)
..... .-+..-++....+|...|.+.+....-....+.|-. ...-|+. +-.+|.+.++++.+...|.+
T Consensus 249 ~a~el----~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 249 KALEL----ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHhH----hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 55542 123333344444555555444444333333332211 1111111 11233444455555555554
Q ss_pred HHhCCCCCChh-------------------------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011905 332 VVAGGSVSSGG-------------------------CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 332 ~~~~~~~~~~~-------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
.......|+.. -...=...+.+.|++..|++.|.++++.. +-|...|..-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 44332222211 01112455678899999999999999875 44678888888899
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
.+.|.+..|+.-.+...+.+ +.....|..-..++.-..+|++|++.|++.++.. +.+......+.++..
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~---p~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD---PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD-PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 99999999998888888764 2355666666666667789999999999998887 445455555555444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.3e-05 Score=69.27 Aligned_cols=209 Identities=11% Similarity=0.029 Sum_probs=142.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh
Q 011905 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 180 (475)
.++...+..+.|+.+.+.+.+.. +-+..+|+.--.++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+.
T Consensus 45 a~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 34455667788888888877764 445556665555556666 5788999998888765 34666777666666666653
Q ss_pred --hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CC----hH
Q 011905 181 --IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---GS----ME 251 (475)
Q Consensus 181 --~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~----~~ 251 (475)
++++.+++++.+.+ +-+..+|+...-++...|+++++++.++++++.+.. |..+|+.....+.+. |. .+
T Consensus 123 ~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 67788888887665 567788888888888888899999999999887644 666776666555544 22 24
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011905 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK----GMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 318 (475)
+.++...+++... +-|...|+-+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 201 ~el~y~~~aI~~~---P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN---PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC---CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 5667766666642 45677888777777763 34456777777766543 3356667777777764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.1e-05 Score=80.36 Aligned_cols=225 Identities=12% Similarity=0.072 Sum_probs=146.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI-DLYP---DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...|-..|......++.+.|.+++++.+.. +++- -...|.++++.-...|.-+...++|+++.+.- -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4456666777777777888888877776542 1111 12356666666666677777777887777641 1345667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN---RVTISTLIKG 315 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~ 315 (475)
.|...|.+.+.+++|.++++.|.+. . .-....|...+..+.+..+-++|..++.+..+. -|. .......+..
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F--~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-F--GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-h--cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 7777788888888888888888774 2 245567777777777777777788887776654 222 3334445555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG--LACSVMIRELCLGGQVL 393 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 393 (475)
-.+.|+.+++..+|+..+...+. -...|+..++.-.++|+.+.+..+|++....++.|-. ..|...+..=-..|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 56777888888888877766544 3456788888777888888888888887777665532 33444444333344443
Q ss_pred HH
Q 011905 394 EG 395 (475)
Q Consensus 394 ~a 395 (475)
.+
T Consensus 1689 ~v 1690 (1710)
T KOG1070|consen 1689 NV 1690 (1710)
T ss_pred hH
Confidence 33
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=6.5e-06 Score=78.69 Aligned_cols=211 Identities=16% Similarity=0.119 Sum_probs=135.1
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+|-...-..+...+.+.|-...|..+|+++.. |..+|.+|+..|+..+|..+..+..+. +||...|.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 33334445566777778888888888876653 556777788888888888877776663 56777776
Q ss_pred HHHHHHHhcCCHHHHHHHH----------------------------HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 311 TLIKGFCVEGNLDEAYQLI----------------------------DKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 362 (475)
.+.+..-...-+++|.++. +.-.+.+.- ...+|-.+.-+..+.+++..|.+
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 6655544444444444444 443332211 23455556666667777777777
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 363 LFSKMLASGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 363 ~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
.|..-... .|| ...||.+-.+|.+.++-.+|...+++..+.+.. +-.+|...+....+.|.+++|++.+..+.+
T Consensus 541 aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~---~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ---HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC---CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 77776643 555 356788888888888888888888887776633 345666666667777888888888777765
Q ss_pred cCC-CCChhhHHHHHHHHHh
Q 011905 442 KRI-WLQGPYVDKIVEHLKK 460 (475)
Q Consensus 442 ~~~-~~~~~~~~~l~~~~~~ 460 (475)
... ..|..+...++....+
T Consensus 616 ~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred hhhhcccchhhHHHHHHHHh
Confidence 422 2355555555555444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00011 Score=66.67 Aligned_cols=166 Identities=12% Similarity=0.078 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS--MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALG 292 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 292 (475)
+++++..++.+.+...+ +..+|+.-...+.+.|+ .++++.+++++.+.. +.+..+|+...-++...|+++++++
T Consensus 88 l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d---pkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 88 LEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD---AKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444444444443221 33333333222333332 134444444444432 2344445544444445555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----CCHHHHH
Q 011905 293 ILDRMEALGCAPNRVTISTLIKGFCVE---GN----LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT----KRLKEAE 361 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~~---~~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~ 361 (475)
.++++.+.+.. |...|+.....+.+. |. .++......+++...+. +...|+.+...+... ++..+|.
T Consensus 164 ~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 164 YCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHH
Confidence 55555444322 233333332222222 11 12344444444443322 344455555555442 2234455
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011905 362 KLFSKMLASGVKPDGLACSVMIRELC 387 (475)
Q Consensus 362 ~~~~~m~~~~~~p~~~~~~~li~~~~ 387 (475)
+++.+..+.+ ..+......|+..|+
T Consensus 242 ~~~~~~~~~~-~~s~~al~~l~d~~~ 266 (320)
T PLN02789 242 SVCLEVLSKD-SNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHhhccc-CCcHHHHHHHHHHHH
Confidence 5555544332 123344445555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.8e-05 Score=74.48 Aligned_cols=213 Identities=14% Similarity=0.059 Sum_probs=91.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011905 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.+...+...|-...|..+|+++. .|.-+|.+|...|+..+|..+..+..+. +||...|..+.+......
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChH
Confidence 33444444555555555554432 2334444455555555555544444442 344444544444444444
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011905 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 328 (475)
-+++|.++.+..... +-..+.......+++.++.+.|+.-.+.+ +--..+|..+-.+..+.+++..|.+.
T Consensus 472 ~yEkawElsn~~sar---------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 472 LYEKAWELSNYISAR---------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred HHHHHHHHhhhhhHH---------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence 444444444433221 00111111122344455554444433221 11233344444444444555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 329 IDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
|.......+. +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|-..+-...+.|.+++|.+.+.++.+
T Consensus 542 F~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 542 FHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 5444443221 23445555555555555555555555555443 22233333333334445555555555544443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.4e-05 Score=68.52 Aligned_cols=330 Identities=12% Similarity=0.075 Sum_probs=146.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH-HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN-LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNV 170 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~-~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~l 170 (475)
.++.-...++....+.++-++...+-+.+.+. .+.--+|.. .|.+.. +++|+++|+.....+ |.-...|.-
T Consensus 119 k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~H-YQeAIdvYkrvL~dn--~ey~alNVy 190 (557)
T KOG3785|consen 119 KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMH-YQEAIDVYKRVLQDN--PEYIALNVY 190 (557)
T ss_pred CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHH-HHHHHHHHHHHHhcC--hhhhhhHHH
Confidence 44444444555555667766666665555432 122222333 344443 788888888877642 444444443
Q ss_pred H-HHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH--------------HHHCC------
Q 011905 171 I-RLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV--------------MKRHG------ 229 (475)
Q Consensus 171 l-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~--------------m~~~g------ 229 (475)
+ -+|.+..-++-+.++++-..+. ++.+....|.......+.=+-..|++-.+. +.+++
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrn 269 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRN 269 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeC
Confidence 3 3455666677777776655543 122233333322222221111111111111 11110
Q ss_pred ------CCc-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC-------CHHHHH
Q 011905 230 ------CAA-----NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG-------MMKEAL 291 (475)
Q Consensus 230 ------~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~ 291 (475)
+-| -+..--.++--|.+.++..+|..+..++.. ..|-......+ .++..| ...-|.
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgv--v~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGV--VFAALGQETGSREHLKIAQ 343 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHH--HHHHhhhhcCcHHHHHHHH
Confidence 000 011122344456777888888877766543 12322222221 222222 234444
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 292 GILDRMEALGCAPNRV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
+.|+..-+.+..-|+. --..+..++.-..++++++-.++.+..--...|...| .+.++++..|.+.+|+++|-.....
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh
Confidence 5554444433322211 1122333334444555555555555443322222222 3555666666666666666555433
Q ss_pred CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 371 GVKPDGLACS-VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 ~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.++ |..+|. .|.++|.+.+.++.|+.++-.+.. |.........+...|.+.+.+--|-+.|+.+...
T Consensus 423 ~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 423 EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 222 233333 333455666666665444322221 1111122222334444555555555555555443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.7e-06 Score=71.04 Aligned_cols=192 Identities=10% Similarity=-0.039 Sum_probs=112.1
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 011905 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR--VTI 309 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~ 309 (475)
.....+..+...+.+.|++++|...|+++......-+....++..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 355667777777888888888888888877642110111235566777788888888888888887764321111 133
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011905 310 STLIKGFCVE--------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 310 ~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 381 (475)
..+..++... |+.++|.+.++.+.+..... ...+..+... +..... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~a~~~~----~~~~~~------~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS-EYAPDAKKRM----DYLRNR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC-hhHHHHHHHH----HHHHHH------HH--------HHHHH
Confidence 3444444433 56677777777776654321 1112111110 000000 00 00113
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+...+.+.|++++|...++.+.+.....+.....+..+..++...|++++|.++++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4455777888888888888887763211123567778888888888888888887777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.4e-06 Score=72.66 Aligned_cols=56 Identities=13% Similarity=0.137 Sum_probs=26.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 279 QIFCGKGMMKEALGILDRMEALGC--APNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
..+.+.|++++|+..++...+... +.....+..+..++.+.|++++|...++.+..
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555555555555555443311 11233444555555555555555555554443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-05 Score=67.04 Aligned_cols=159 Identities=9% Similarity=0.047 Sum_probs=107.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 011905 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRL 357 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 357 (475)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.+.. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3456777777765444322211 10 0112255667777777777766543 677788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011905 358 KEAEKLFSKMLASGVKPDGLACSVMIREL-CLGGQ--VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
++|...|++..+.. .-+...+..+..++ ...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|+.
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d---P~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD---ANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC---CCChhHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888653 22456666666653 56666 488888888888875 2367788888888888888888888
Q ss_pred HHHHHHHcCCCCChhhHHHH
Q 011905 435 LARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 435 ~~~~m~~~~~~~~~~~~~~l 454 (475)
.++++++.. +|+..-...+
T Consensus 166 ~~~~aL~l~-~~~~~r~~~i 184 (198)
T PRK10370 166 LWQKVLDLN-SPRVNRTQLV 184 (198)
T ss_pred HHHHHHhhC-CCCccHHHHH
Confidence 888888876 5555544433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00011 Score=62.07 Aligned_cols=152 Identities=15% Similarity=0.120 Sum_probs=72.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011905 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
-...|++.|++++|++....... .+.... =...+.+..+.+-|.+.++.|.+.. +..|.+.|..++.+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~------lE~~Al--~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~l 182 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGEN------LEAAAL--NVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKL 182 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccch------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHH
Confidence 33445556666666655554111 122222 2233445555566666666665532 444555555544432
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHH
Q 011905 320 ----GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ-VLE 394 (475)
Q Consensus 320 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~ 394 (475)
+++.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++.+... .-++.+...++..-...|. .+-
T Consensus 183 a~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHH
Confidence 3455566666665442 23455555555555666666666666666655543 2233444444333333332 233
Q ss_pred HHHHHHHHHH
Q 011905 395 GFCLYEDIEK 404 (475)
Q Consensus 395 a~~~~~~~~~ 404 (475)
..+.+..++.
T Consensus 261 ~~r~l~QLk~ 270 (299)
T KOG3081|consen 261 TERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHh
Confidence 3344444444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0006 Score=63.45 Aligned_cols=405 Identities=12% Similarity=0.074 Sum_probs=200.0
Q ss_pred CCHHHHHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHH
Q 011905 57 LDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136 (475)
Q Consensus 57 ~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 136 (475)
-+-+.+..+++.......+.+..++.... ..|+.++..+..-++...+.++++.+..+|..+...- .+...|..-|
T Consensus 18 ~di~sw~~lire~qt~~~~~~R~~YEq~~--~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 18 YDIDSWSQLIREAQTQPIDKVRETYEQLV--NVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred ccHHHHHHHHHHHccCCHHHHHHHHHHHh--ccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 35666777777764445566666766554 3455666777777888888899999999999988763 4466666655
Q ss_pred HHHHh-cCCHHH----HHHHHHhcc-cCCCCC-CHhhHHHHHHH---------HHhcCChhHHHHHHHHhccCCCCC---
Q 011905 137 NLCEK-ARLANE----AMWVLRKMP-EFDLRP-DTIIYNNVIRL---------FCEKGDMIAADELMKGMGLIDLYP--- 197 (475)
Q Consensus 137 ~~~~~-~~~~~~----A~~~~~~m~-~~~~~~-~~~~~~~ll~~---------~~~~g~~~~a~~~~~~m~~~~~~~--- 197 (475)
.--.+ .++... -.+.|+-.. +.|+.+ +...|+..+.- +..+.+++...+++.++...-+..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 53332 222222 233333322 234322 22344444433 334456667777787776522111
Q ss_pred ---ChhhHHHHHHHH-------HhcCCHHHHHHHHHHHHH--CCCCcCHH---------------HHHHHHHHHHhcC--
Q 011905 198 ---DIITYVSMIKGF-------CNAGRLEDACGLFKVMKR--HGCAANLV---------------AYSALLDGICRLG-- 248 (475)
Q Consensus 198 ---~~~~~~~li~~~-------~~~~~~~~a~~~~~~m~~--~g~~~~~~---------------~~~~ll~~~~~~g-- 248 (475)
|-..|..=|+.. -+..++..|.++++++.. .|...+.. .|..+|.-=-..+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 111222212111 123345566666666543 23211111 1222222111000
Q ss_pred ----C--hHHHHHHHHHHHhcCCCCCCcHHHH-HHH----HHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHHHHH
Q 011905 249 ----S--MERALELLGEMEKEGGDCSPNVVTY-TSV----IQIFCGKGM-------MKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 249 ----~--~~~a~~~~~~~~~~~~~~~~~~~~~-~~l----i~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
. -....-++++.... .+..|++... ... -+.+...|+ .+++..+++.....-..-+..+|.
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~-l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLY-LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred cccccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111111111110 1111221110 000 111222232 344444554444322222333333
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 011905 311 TLIKGFCVEG---NLDEAYQLIDKVVAG-GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP-DGLACSVMIRE 385 (475)
Q Consensus 311 ~li~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~ 385 (475)
.+...--..- +.+....+++++... ...|+ -+|..+++.-.+..-++.|..+|.+..+.+..+ +....++++.-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 3332211111 244445555555443 23332 346666666666666777777777777766555 55566666665
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcC
Q 011905 386 LCLGGQVLEGFCLYEDIEKI-GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG--PYVDKIVEHLKKSG 462 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~g 462 (475)
+| .++.+-|.++|+--.++ |- +...-...++-+...++-..|..+|++.+..+++++. .+|+.++..-..-|
T Consensus 412 ~c-skD~~~AfrIFeLGLkkf~d----~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKKFGD----SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 44 35666777777654433 21 2333455666666777777777777777776544433 46777777777777
Q ss_pred CHhHHhhccc
Q 011905 463 DEELITNLPK 472 (475)
Q Consensus 463 ~~~~a~~l~~ 472 (475)
+.+.+.++.+
T Consensus 487 dL~si~~lek 496 (656)
T KOG1914|consen 487 DLNSILKLEK 496 (656)
T ss_pred cHHHHHHHHH
Confidence 7777666543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00019 Score=66.67 Aligned_cols=359 Identities=13% Similarity=0.016 Sum_probs=227.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC-HhhHHHHHHHHHhcCChh
Q 011905 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-TIIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~ 181 (475)
.....|+++.|+..|.+..... +++...|..=..+|+..|++++|++=-.+..+. .|+ ...|+....++.-.|+++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred hhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4456799999999999988876 558888888889999999999998876666654 344 567899999999999999
Q ss_pred HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHH---HHHHHHHHCC---CCcCHHHHHHHHHHHHhc--------
Q 011905 182 AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDAC---GLFKVMKRHG---CAANLVAYSALLDGICRL-------- 247 (475)
Q Consensus 182 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~---~~~~~m~~~g---~~~~~~~~~~ll~~~~~~-------- 247 (475)
+|+.-|.+=++.. +.+...++.+..++.......... .++..+.... .......|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999877654 445566667776662110000000 0111110000 000111233333222111
Q ss_pred --CChHHHHHHHHHH-----HhcC-----CCCCC----------------------cHHHHHHHHHHHHhcCCHHHHHHH
Q 011905 248 --GSMERALELLGEM-----EKEG-----GDCSP----------------------NVVTYTSVIQIFCGKGMMKEALGI 293 (475)
Q Consensus 248 --g~~~~a~~~~~~~-----~~~~-----~~~~~----------------------~~~~~~~li~~~~~~g~~~~a~~~ 293 (475)
.++..+.-.+... ...+ .+..| -..-...+.++..+..+++.|++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 1111121111100 0000 00001 112255678888888999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-------HHHHHHHhcCCHHHHHHHHHH
Q 011905 294 LDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS-------SLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 294 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~~A~~~~~~ 366 (475)
+....... -+..-++....+|...|++..+...-+..++.|... ..-|+ .+..+|.+.++++.|+..|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 98887764 455666777788899999888888777777665432 12233 234466677889999999988
Q ss_pred HHHCCCCCCHHHHH-------------------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 367 MLASGVKPDGLACS-------------------------VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 367 m~~~~~~p~~~~~~-------------------------~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
.+.....|+..+-. .=-..+.+.|++..|...|.++++.. +.|...|....-
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~---P~Da~lYsNRAa 400 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD---PEDARLYSNRAA 400 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC---CchhHHHHHHHH
Confidence 77654444433211 11223556788999999999988876 358888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+|.+.|.+.+|++=.+..++.. ++....|..=..++.-..+++.|.+.++
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888888775 5555555555666666667777665544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00036 Score=61.17 Aligned_cols=296 Identities=11% Similarity=0.021 Sum_probs=207.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH---HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH-
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI---KGFCNAGRLEDACGLFKVMKRHGCAANLVAYS- 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~- 238 (475)
++.-.--+...+...|++..|+.-|....+ -|+..|.++. ..|...|+-..|+.=+.+..+. +||-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARi 110 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARI 110 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHH
Confidence 333444566677788999999999988875 3444454443 4677788888888888888776 56643221
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH----------HH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVV----------TY--TSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
.-...+.+.|.++.|..=|+.+.+....-..... .| ...+..+...|+...|+.....+.+.. +.|.
T Consensus 111 QRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda 189 (504)
T KOG0624|consen 111 QRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDA 189 (504)
T ss_pred HhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchh
Confidence 1234678899999999999999885311001111 12 223445667899999999999998863 4577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH----H-
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS----V- 381 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~- 381 (475)
..|..-..+|...|++..|+.=++...+..-. ++.++.-+-..+...|+.+.++...++-++. .||...+- .
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKkl 266 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKL 266 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHH
Confidence 88888889999999999999888877665443 4556667778888999999999999888854 56654321 1
Q ss_pred --HHH------HHHhcCCHHHHHHHHHHHHHcCCC-CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 382 --MIR------ELCLGGQVLEGFCLYEDIEKIGFL-SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 382 --li~------~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
+.. .....+++.++.+-.+...+.... +......+..+-.++...|++.+|++...+.++.. +.|+.++-
T Consensus 267 kKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~ 345 (504)
T KOG0624|consen 267 KKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHH
Confidence 111 234457788888888777776433 33344556677778888999999999999998876 55677776
Q ss_pred HHHHHHHhcCCHhHHhh
Q 011905 453 KIVEHLKKSGDEELITN 469 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~ 469 (475)
.=..+|.-...++.|..
T Consensus 346 dRAeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIH 362 (504)
T ss_pred HHHHHHhhhHHHHHHHH
Confidence 66677776666666543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00016 Score=61.05 Aligned_cols=247 Identities=12% Similarity=0.102 Sum_probs=155.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 184 (475)
-..|++..++.......... -++..-..+.++|...|++... ...++... .|.......+.......++.+.-+
T Consensus 19 fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~---~~eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIV---ISEIKEGK-ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccc---cccccccc-CChHHHHHHHHHHhhCcchhHHHH
Confidence 33456655555444433321 3344444456677777765433 33343332 344444444444444455544443
Q ss_pred H-HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011905 185 E-LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 185 ~-~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
. +.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.+++|.+-
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3 34444443333333344444567889999999998887621 3444444456677888999999999999872
Q ss_pred CCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011905 264 GGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS 339 (475)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 339 (475)
.+..+.+.|..++.+ .+.+.+|+-+|++|.+. ..|+..+.+....++...|++++|..++++...++..
T Consensus 167 -----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 167 -----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred -----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 456667766666554 56789999999999875 5789999999999999999999999999999988765
Q ss_pred ChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 011905 340 SGGCYSSLVVELVRTKRL-KEAEKLFSKMLAS 370 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 370 (475)
+..+...++.+-...|.. +-..+.+.+++..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 455555555555555554 4455666777654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00011 Score=74.43 Aligned_cols=169 Identities=12% Similarity=0.080 Sum_probs=82.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
+...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...+.+.++...+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 3445555666666666666666666644443 2222 2222222244444443333222 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
.......++..+..+...|...+ -+...+..+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|... +
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D---~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD---RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHh-h
Confidence 22223333333333333333322 233355556666666666666666666666532 34555666666666655 6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 336 (475)
.++|.+++.+.... +...+++..+.++|.++....
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC
Confidence 66666665554432 344445555556665555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00057 Score=65.86 Aligned_cols=135 Identities=16% Similarity=0.152 Sum_probs=90.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011905 313 IKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392 (475)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 392 (475)
+.+......+.+|..+++.+..+... ..-|..+.+.|...|+++.|.++|.+. + .++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccH
Confidence 44455667778888888877765433 234677778888888888888887654 2 245567778888888
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+.|.++-.+.... ......|-.-..-+-+.|++.+|.+++-. .| .|+ ..++.|.+.|..+...+++
T Consensus 808 ~da~kla~e~~~~----e~t~~~yiakaedldehgkf~eaeqlyit---i~-~p~-----~aiqmydk~~~~ddmirlv 873 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP----EATISLYIAKAEDLDEHGKFAEAEQLYIT---IG-EPD-----KAIQMYDKHGLDDDMIRLV 873 (1636)
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHhHHhHHhhcchhhhhheeEE---cc-Cch-----HHHHHHHhhCcchHHHHHH
Confidence 8888776665542 22455566666666677888888777533 23 333 4467788888888777765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5e-05 Score=64.06 Aligned_cols=158 Identities=17% Similarity=0.145 Sum_probs=91.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011905 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
..+-..+...|+-+....+........ .-|............+.|++..|...+.+..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 334455555666666665555533221 2233344445666666666767766666665543 23566666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011905 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
|+.++|..-|.+..+.- .-+...++.+.-.+.-.|+.+.|..++......+ .-|..+-..+.......|++++|..
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCchHHHHHHHHHHhhcCChHHHHh
Confidence 77766666666666542 1123445555555666666666666666666543 2245555666666666666666666
Q ss_pred HHHH
Q 011905 435 LARF 438 (475)
Q Consensus 435 ~~~~ 438 (475)
+...
T Consensus 224 i~~~ 227 (257)
T COG5010 224 IAVQ 227 (257)
T ss_pred hccc
Confidence 5443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00011 Score=74.43 Aligned_cols=220 Identities=11% Similarity=0.038 Sum_probs=148.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 011905 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT-YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240 (475)
Q Consensus 162 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 240 (475)
.+...+..|+..+...+++++|.++.+..... .|+... |-.+...+...++...+.-+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 35667889999999999999999999976654 354433 33333355555554433332 34
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011905 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 320 (475)
+.......++..+..+...+... .-+..++-.+..+|-+.|+.++|..+++++.+.. +-|....|.+...|...
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~----~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY----GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh----hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 44455555665555555556553 2455678888999999999999999999999887 55788899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------CCCCCHHHHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-------------------GVKPDGLACSV 381 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------~~~p~~~~~~~ 381 (475)
++++|.+++...+.. |...+++..+.++|.++... |..--..++-.
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~ 228 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLED 228 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHH
Confidence 999999999887664 34444555555555555543 21222233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+...|....+++++..+++.+.+... .|.....-++.+|.
T Consensus 229 l~~~y~~~~~~~~~i~iLK~iL~~~~---~n~~a~~~l~~~y~ 268 (906)
T PRK14720 229 LYEPYKALEDWDEVIYILKKILEHDN---KNNKAREELIRFYK 268 (906)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHhcCC---cchhhHHHHHHHHH
Confidence 45566667778888888888887652 25566666777765
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5e-05 Score=64.09 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=81.3
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..+...|+-+....+....... .+.|....+..+....+.|++..|...|.+..... ++|..+|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChh
Confidence 3444455555555554443322 12344444555555566666666666666555433 555566666666666666666
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+|..-|.+..+.-.. +...++.+.-.|.-.|+.+.|..++......+ +.|..+-..+.......|++++|.++...
T Consensus 152 ~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~---~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 152 EARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP---AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC---CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 666666555554222 34445555555555566666666665555432 23444555555555555666665555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00014 Score=72.73 Aligned_cols=183 Identities=9% Similarity=0.014 Sum_probs=135.6
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 011905 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS 346 (475)
Q Consensus 268 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 346 (475)
+.++..+-.|.......|..++|..+++...+. .|+ ......+...+.+.+++++|...++.....+.. +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 456888888899999999999999999998885 344 556677888889999999999999999887654 5677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
+..++.+.|++++|..+|++....+ .-+..++..+-.++...|+.++|...|+...+..- +....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~---~~~~~~~~~~------ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG---DGARKLTRRL------ 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC---cchHHHHHHH------
Confidence 8888999999999999999998742 23367888888888999999999999999887642 2345555443
Q ss_pred CCHHHHHHHHHHHHHcC----CCCChhhHHHHHHHHHhcCC
Q 011905 427 NHSVEAAKLARFMLKKR----IWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~----~~~~~~~~~~l~~~~~~~g~ 463 (475)
++...-..+++++.-.+ .+.........+.-+.+...
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (694)
T PRK15179 230 VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRN 270 (694)
T ss_pred HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCc
Confidence 23344455566655443 33344456666666655543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.2e-06 Score=64.68 Aligned_cols=110 Identities=7% Similarity=-0.086 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+...|++++|...|+...... ..+...+..+..++...|++++|...|+...+.. +.+...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~---p~~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD---ASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHHHH
Confidence 4456667778888888888888887653 2356777777778888888888888888888754 24677788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011905 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
.+.|++++|++.|+..++.. +.++..+.....++
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 88888888888888888776 55555554444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7e-05 Score=63.10 Aligned_cols=119 Identities=9% Similarity=0.036 Sum_probs=74.6
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HhcCC--hHHH
Q 011905 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI-CRLGS--MERA 253 (475)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~-~~~g~--~~~a 253 (475)
.++.+++...+++....+ +.|...|..+...|...|++++|...|++..+... -+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555665566555544 55666677777777777777777777776666542 2555666666543 45555 3677
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+++++..+.+ +.+..++..+...+...|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~d---P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD---ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777776643 345566666666667777777777777776655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00047 Score=63.50 Aligned_cols=117 Identities=20% Similarity=0.166 Sum_probs=64.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 394 (475)
+...|++++|+..++.+++.-. -|...+....+.+.+.|+.++|.+.++++... .|+ ....-.+..+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 3445666666666666555432 24444555555666666666666666666644 444 2333344455666666666
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
|.++++...... +.|...|..|..+|...|+..+|....-+
T Consensus 393 ai~~L~~~~~~~---p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 393 AIRILNRYLFND---PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHhhcC---CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 666666655543 23555666666666655555555444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.3e-05 Score=75.25 Aligned_cols=133 Identities=14% Similarity=0.073 Sum_probs=64.1
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
.++..+..|.....+.|..++|..+++...+.. +-+......+..++.+.+++++|+..+++..... +-+......+.
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 334455555555555555555555555554432 1123334444455555555555555555554432 22333344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555555555555555555422 12344555555555555555555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00096 Score=61.53 Aligned_cols=111 Identities=21% Similarity=0.165 Sum_probs=58.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc-HHHHHHHHHHHHhcCCHH
Q 011905 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN-VVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 288 (475)
...|+.++|+..++.+.+.- +-|+.........+.+.++.++|.+.++++... .|+ ...+-.+..+|.+.|++.
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL----DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCCccHHHHHHHHHHHhcCChH
Confidence 34555566666666555542 224444445555556666666666666655553 233 333444555555666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 326 (475)
+|+.+++..... .+.|+..|..|.++|...|+..++.
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~ 428 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEAL 428 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHH
Confidence 666665555443 2335555566666666555555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.4e-05 Score=60.80 Aligned_cols=92 Identities=10% Similarity=-0.094 Sum_probs=50.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011905 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.. +.+...+..+..++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34445555556666665555555443 3345555555555555666666666665555543 224555555555555566
Q ss_pred ChHHHHHHHHHHHh
Q 011905 249 SMERALELLGEMEK 262 (475)
Q Consensus 249 ~~~~a~~~~~~~~~ 262 (475)
++++|.+.|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666655555
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0017 Score=64.96 Aligned_cols=183 Identities=16% Similarity=0.105 Sum_probs=124.9
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 011905 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 187 (475)
++...+...|-...+.. +-=...|..|...|....+..+|.+.|++..+.+ ..+...+..+.+.|++..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 34455554443333322 2224577888888888878889999999887765 347778888899999999999998884
Q ss_pred HHhccCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 011905 188 KGMGLIDLYPDIIT--YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265 (475)
Q Consensus 188 ~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (475)
-..-+.. +.-... |....-.|.+.++...|..-|+...+..+. |...|..+..+|.++|++..|.++|.+....
T Consensus 550 l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 550 LRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 3332211 111122 223344567788889999888888876533 7888999999999999999999999888773
Q ss_pred CCCCcHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 011905 266 DCSPNVVTYTS--VIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 266 ~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.|+. .|.. .....+..|.+.+|+..+.....
T Consensus 626 --rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 --RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3432 2222 22345678888888888877653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0013 Score=55.34 Aligned_cols=190 Identities=15% Similarity=0.079 Sum_probs=116.6
Q ss_pred cCChHHHHHHHHHHHhcC-CC-CCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCH
Q 011905 247 LGSMERALELLGEMEKEG-GD-CSPNVV-TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI-KGFCVEGNL 322 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~-~~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~~~~ 322 (475)
..+.++..+++.++.... .+ ..++.. .|..++-+....|+.+.|...++++...- |.+.-...+= -.+-..|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhch
Confidence 346777777777776531 11 223322 34455556667777777777777776652 3332222221 123346777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 323 DEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 323 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 402 (475)
++|.++++.+++.+. .|..++-.=+...-..|+.-+|++-+.+..+. +..|...|.-+-..|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 788888887777663 24555655555556667766777777666654 3557777777777777888888887777777
Q ss_pred HHcCCCCCCchhhHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 011905 403 EKIGFLSSVDSDIHSVLLLGLCRKN---HSVEAAKLARFMLKKR 443 (475)
Q Consensus 403 ~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~ 443 (475)
.-.. |.+...+..+.+.+.-.| +.+.|.++|.+.++..
T Consensus 181 ll~~---P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQ---PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 7643 235556666666554433 4555677777776655
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.3e-05 Score=58.68 Aligned_cols=92 Identities=14% Similarity=0.104 Sum_probs=39.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011905 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.+...+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|...++...+.+ +.+...+..+...|...|
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g 99 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALG 99 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcC
Confidence 33344444444444444444443322 2233444444444444444444444444444332 223334444444444444
Q ss_pred ChHHHHHHHHHHHh
Q 011905 249 SMERALELLGEMEK 262 (475)
Q Consensus 249 ~~~~a~~~~~~~~~ 262 (475)
++++|.+.|+...+
T Consensus 100 ~~~~A~~~~~~al~ 113 (135)
T TIGR02552 100 EPESALKALDLAIE 113 (135)
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.8e-06 Score=47.98 Aligned_cols=33 Identities=39% Similarity=0.758 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD 375 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 375 (475)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00016 Score=57.10 Aligned_cols=97 Identities=16% Similarity=0.162 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
.....+...+...|++++|.+.++.....+ +.+...+..+...+.+.|++++|..+++.....+ +.+...+..+..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~la~ 93 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD---PDDPRPYFHAAE 93 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCChHHHHHHHH
Confidence 334455555666666666666666665543 2355566666666666666666666666665532 334555555566
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011905 280 IFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+...|++++|...|+...+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666665553
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00024 Score=56.80 Aligned_cols=118 Identities=15% Similarity=0.117 Sum_probs=52.5
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011905 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR--VTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~ 324 (475)
.++...+...++.+.....+.+......-.+...+...|++++|...|+........|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555532111111222223344455555555555555555554322211 122234444555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 325 AYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (475)
|...++......+ ....+......|...|+.++|...|+.
T Consensus 104 Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5555544322221 223344445555555555555555543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.011 Score=58.75 Aligned_cols=226 Identities=9% Similarity=0.058 Sum_probs=133.9
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhH
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIA 182 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 182 (475)
...+++..|......+.+. .|+.. |..++. ...+.|..++|..+++.....+.. |..|...+-.+|.+.++.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3456777777777776654 23322 223333 345778888888887776655433 77788888888888888888
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC----------ChHH
Q 011905 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG----------SMER 252 (475)
Q Consensus 183 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g----------~~~~ 252 (475)
|..+|+..... .|+..-...+..+|.+.+++.+-.++--+|.+. .+-+.+.+=+++..+.+.- -..-
T Consensus 96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 88888887643 466777777778888877776655544444442 2223333333444443321 1234
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL-DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDK 331 (475)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 331 (475)
|.+.++.+.+.+ |.--+..-.-.....+-..|++++|.+++ ....+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 173 A~~m~~~~l~~~-gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 173 AEKMVQKLLEKK-GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHhccC-CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 555666666643 21112222222233445567788888777 3333332333444445666777777788887777777
Q ss_pred HHhCCCC
Q 011905 332 VVAGGSV 338 (475)
Q Consensus 332 ~~~~~~~ 338 (475)
+...|..
T Consensus 252 Ll~k~~D 258 (932)
T KOG2053|consen 252 LLEKGND 258 (932)
T ss_pred HHHhCCc
Confidence 7776643
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00016 Score=57.77 Aligned_cols=126 Identities=17% Similarity=0.078 Sum_probs=72.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG--LACSVMIR 384 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~ 384 (475)
|..++..+ ..++...+...++.+.+...... ....-.+...+...|++++|...|+........|+. .....|..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 44444444 36666666666666666533211 122333445666777777777777777765422221 12333455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
.+...|++++|+..++...... .....+....+.|.+.|++++|...|++.
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~----~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA----FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc----hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6667777777777775543322 23455666677777777777777777654
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.004 Score=52.58 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=10.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhc
Q 011905 169 NVIRLFCEKGDMIAADELMKGMG 191 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~m~ 191 (475)
.++-+....|+.+.|...++++.
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~ 79 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLR 79 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH
Confidence 33333444444444444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=5.8e-06 Score=47.61 Aligned_cols=33 Identities=30% Similarity=0.399 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777777777777777777777777777765
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00026 Score=65.61 Aligned_cols=120 Identities=14% Similarity=0.061 Sum_probs=55.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.|+..+...++++.|..+++++.+.+ |+ ....++..+...++..+|.+++.+.++.. +-+...+..-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444455555555555555443 21 12334444444455555555555554331 113333333333444555
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
+.+.|+.+.+++.+.. +.+..+|..|..+|.+.|++++|+-.++.
T Consensus 249 ~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 249 KYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 5555555555555532 12444555555555555555555544433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.9e-06 Score=47.23 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAP 304 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 304 (475)
+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0078 Score=60.49 Aligned_cols=161 Identities=12% Similarity=0.042 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCC-CCCCHhhHHHHHHHH
Q 011905 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFD-LRPDTIIYNNVIRLF 174 (475)
Q Consensus 96 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~ 174 (475)
.|..+...++...+...|...|+...+.. .-+......+.+.|++..+++.|..+.-..-+.. ...-...|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 34445555555556667777777766554 4567777788888999999998888843332211 001112233344455
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH--HHHHHHhcCChHH
Q 011905 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA--LLDGICRLGSMER 252 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~--ll~~~~~~g~~~~ 252 (475)
.+.++...|..-|+...+.. +.|...|..+..+|.+.|.+..|.++|.+.... .|+ .+|.. ....-+..|.+.+
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHH
Confidence 66667777777777666544 456667777777777777777777777666554 222 12221 1222344455555
Q ss_pred HHHHHHHHH
Q 011905 253 ALELLGEME 261 (475)
Q Consensus 253 a~~~~~~~~ 261 (475)
|...+..+.
T Consensus 649 ald~l~~ii 657 (1238)
T KOG1127|consen 649 ALDALGLII 657 (1238)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00035 Score=64.73 Aligned_cols=122 Identities=14% Similarity=0.130 Sum_probs=74.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011905 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.|+..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|.+++.+..+.. +.+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444555666777777777766543 33 33345666666666666777766666542 235555555566666777
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
+++.|+++.+++.... |-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls---P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS---PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777766632 3344567777777777777777776666554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.7e-06 Score=46.75 Aligned_cols=32 Identities=31% Similarity=0.509 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (475)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34555555555555555555555555544444
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.04 E-value=8e-05 Score=69.25 Aligned_cols=124 Identities=18% Similarity=0.089 Sum_probs=73.5
Q ss_pred CCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccC--CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhh
Q 011905 124 GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF--DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIIT 201 (475)
Q Consensus 124 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 201 (475)
+.+.+......+++.+....+++++..++-+.... ....-..|.+++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33455555555666666666666666666655442 1112233445666666666666666666666666666666666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
+|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666666555445555555555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00011 Score=68.28 Aligned_cols=123 Identities=15% Similarity=0.095 Sum_probs=79.3
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH
Q 011905 195 LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH--GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272 (475)
Q Consensus 195 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (475)
.+.+......+++.+....+++.+..++-+.... ....-..|..++++.|.+.|..++++.++..=.. .|+-||..
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~--yGiF~D~~ 139 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ--YGIFPDNF 139 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh--cccCCChh
Confidence 3455666666677776666677777766666554 2222233445777777777777777777776666 55677777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
++|.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777777766665555666665555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00037 Score=53.42 Aligned_cols=99 Identities=14% Similarity=0.084 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
++..+...+.+.|++++|.+.|..+.+. .|+ ...+..+..++...|+++.|...++.+.......+....++..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3455566666777777777777777654 222 2344556666777777777777777776643211112345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 419 LLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+..++.+.|++++|.+.++++++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6667777777777777777777765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.024 Score=56.55 Aligned_cols=227 Identities=11% Similarity=0.027 Sum_probs=117.3
Q ss_pred HHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHH--HHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhc
Q 011905 65 VLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACE--MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142 (475)
Q Consensus 65 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 142 (475)
+.+.+..++...|++-......+++-.+ |..+++ .+.+.|+.++|..+++.....+.. |..|...+-..|.+.
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH
Confidence 3334445566666666666555543322 333333 345677777777777776665533 777777777788888
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC--------
Q 011905 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR-------- 214 (475)
Q Consensus 143 ~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-------- 214 (475)
++.++|..+|++.... .|+......+..+|++.+++.+-.+.--+|.+ ..+.+...+=++++.......
T Consensus 91 ~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccc
Confidence 8888888888877664 35666666777777777766543333222222 112233333334433332110
Q ss_pred --HHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCChHHHHHHHH-HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011905 215 --LEDACGLFKVMKRHG-CAANLVAYSALLDGICRLGSMERALELLG-EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 215 --~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..-|.+.++.+.+.+ ..-+..-.......+...|++++|.+++. ...+. ..+.+...-+--+..+...+++.+.
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~--l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK--LTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHhcChHHH
Confidence 123444444444433 11122222223344455666677766663 22221 1122222333344455555555555
Q ss_pred HHHHHHHHHcC
Q 011905 291 LGILDRMEALG 301 (475)
Q Consensus 291 ~~~~~~m~~~~ 301 (475)
.++-.++...|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 55555555543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00024 Score=51.79 Aligned_cols=68 Identities=13% Similarity=0.320 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011905 320 GNLDEAYQLIDKVVAGGS-VSSGGCYSSLVVELVRTK--------RLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387 (475)
Q Consensus 320 ~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 387 (475)
+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..+++|+..+|+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 444444444444433321 22344555566666566666666666665543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00025 Score=51.67 Aligned_cols=76 Identities=9% Similarity=0.151 Sum_probs=48.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011905 278 IQIFCGKGMMKEALGILDRMEALGC-APNRVTISTLIKGFCVEG--------NLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++.. ++-..+.+|+.|+..+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4444555666666666666666666 666666666666655442 2335566677777777777777777777
Q ss_pred HHHHh
Q 011905 349 VELVR 353 (475)
Q Consensus 349 ~~~~~ 353 (475)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0013 Score=50.44 Aligned_cols=62 Identities=11% Similarity=-0.034 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 238 SALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
..+..++.+.|+++.|.+.|+.+.....+.+....++..+..++.+.|+.++|...++++.+
T Consensus 43 ~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 43 YWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 33444444444444444444444432111111122333333444444444444444444443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.034 Score=52.35 Aligned_cols=188 Identities=11% Similarity=0.010 Sum_probs=135.5
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFC---GKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 326 (475)
-+++.++++..... -...+..+|..+..--- +....+....+++++...-..--..+|...|+...+..-+..|.
T Consensus 309 t~e~~~~yEr~I~~--l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 309 TDEAASIYERAIEG--LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 45566666665542 11223333433322111 11235666677777665433333457888999999999999999
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 327 QLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 327 ~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
.+|.+..+.+..+ ++..+++++..||. ++..-|.++|+--++. -+|. .-....+.-+...++-..++.+|++...
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 9999999988777 77888899987765 6778999999976654 2333 4445667778889999999999999999
Q ss_pred cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 405 IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 405 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.++.++.....|..++.--..-|+...+.++-+++...
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 87666667789999999999999999999998877653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=3.5e-05 Score=42.81 Aligned_cols=28 Identities=39% Similarity=0.861 Sum_probs=12.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0007 Score=55.92 Aligned_cols=103 Identities=17% Similarity=0.283 Sum_probs=61.6
Q ss_pred CcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 011905 269 PNVVTYTSVIQIFCG-----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGC 343 (475)
Q Consensus 269 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 343 (475)
.+..+|..++..|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+-+ |.+- | ...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p-~n~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------P-RNF 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------c-ccH
Confidence 566667777776654 36677777777788888888888888888877654 2221 1 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
+.++...|- .+-+-|++++++|...|+-||..++..|++.+.+.+
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111111111 233556666666666666666666666666655444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.4e-05 Score=42.42 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+|+.++.+|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 46666666666666666666666666655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00031 Score=57.93 Aligned_cols=72 Identities=21% Similarity=0.253 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc----------------CChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK----------------GDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 143 ~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------------g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
|.++-....+..|.+.|+..|..+|+.|++.+=+. .+.+-|++++++|...|+-||..|+..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 33444444444455555555555555555443321 23344556666666666666666666666
Q ss_pred HHHHhcCC
Q 011905 207 KGFCNAGR 214 (475)
Q Consensus 207 ~~~~~~~~ 214 (475)
+.+.+.+.
T Consensus 146 ~iFG~~s~ 153 (228)
T PF06239_consen 146 NIFGRKSH 153 (228)
T ss_pred HHhccccH
Confidence 66555444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00082 Score=48.68 Aligned_cols=95 Identities=16% Similarity=0.027 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++|.+.++...+... .+..++..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP---DNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---cchhHHHHHHHHH
Confidence 4445566666777777777777766542 12234555566666667777777777777666542 2335666666777
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 011905 424 CRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~ 442 (475)
...|++++|.+.+....+.
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 7777777777777766543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0033 Score=47.73 Aligned_cols=109 Identities=19% Similarity=0.127 Sum_probs=66.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPD--GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+..++-..|+.++|+.+|++....|.... ...+-.+-.++...|++++|..++++.......++.+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677888888888888877765544 2344455566777788888888888777653211112233333445666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 425 RKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
..|+.++|++.+-..+... ...|..-+..|.
T Consensus 87 ~~gr~~eAl~~~l~~la~~----~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAET----LPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 7788888887776655432 225555555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0073 Score=54.31 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
+..+...+.+.|++++|.++|++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33344444555555555555554443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00091 Score=48.44 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 011905 237 YSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
+..+...+...|++++|...+...
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 333333344444444444444333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0043 Score=51.18 Aligned_cols=62 Identities=8% Similarity=0.003 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 100 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE 100 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555666666666665554332221 23455555555555555555555555554
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0048 Score=48.66 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
.-.+...+...|++++|.++|+.+...+ +-+..-|..|.-++-..|++++|+..|.......+ -|+..+-.+..++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3344445556666666666666655433 23444455555566666666666666666666553 355566666666666
Q ss_pred cCChHHHHHHHHHHHh
Q 011905 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|+.+.|.+.|+....
T Consensus 116 lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDNVCYAIKALKAVVR 131 (157)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666665554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0031 Score=58.69 Aligned_cols=91 Identities=11% Similarity=-0.018 Sum_probs=53.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
..+...|++++|...|++.++.+.. +...|..+..+|...|++++|+..++++++.. ..+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3445556666666666666655432 34555566666666666666666666666542 123445555555666666666
Q ss_pred HHHHHHHHHHHcC
Q 011905 394 EGFCLYEDIEKIG 406 (475)
Q Consensus 394 ~a~~~~~~~~~~~ 406 (475)
+|...|++..+.+
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0022 Score=52.76 Aligned_cols=119 Identities=11% Similarity=-0.040 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
..|..+...+...|++++|...|++.......+ ...++..+...+...|+.++|+..++...+.. +.....+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHH
Confidence 345555666666677777777777766442221 12356666666777777777777777766642 1234445555
Q ss_pred HHHHH-------hcCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCC
Q 011905 420 LLGLC-------RKNHSVEAAKLARFMLKK---RIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 420 i~~~~-------~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~g~ 463 (475)
...+. ..|++++|...+++.... .+..++..+..+...+...|+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGR 166 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcC
Confidence 55555 677777666666554322 223344334444444444444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00017 Score=51.41 Aligned_cols=81 Identities=21% Similarity=0.184 Sum_probs=39.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011905 354 TKRLKEAEKLFSKMLASGVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
.|+++.|+.+++++.+.... ++...+-.+..++.+.|++++|..+++. .+.+. .+......+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~---~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP---SNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH---CHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC---CCHHHHHHHHHHHHHhCCHHHH
Confidence 35566666666666554211 1223333355556666666666666655 22111 1223333445556666666666
Q ss_pred HHHHHH
Q 011905 433 AKLARF 438 (475)
Q Consensus 433 ~~~~~~ 438 (475)
++++++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 666554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0017 Score=58.11 Aligned_cols=130 Identities=14% Similarity=0.137 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG-FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
+|-.+++..-+.+..+.|..+|.+.++.+ ..+..+|...... +...++.+.|.++|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 44455555555555555555555554322 1222333322222 11234444455555555543 233455555555555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 245 CRLGSMERALELLGEMEKEGGDCSPN---VVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+.|+.+.|..+|++.... ++++ ...|..++..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5566666666666655542 1111 135555555555666666666666555543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.044 Score=47.85 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=31.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCh-hhH---HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDI-ITY---VSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~---~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
....+.+.|++++|.+.|+++.... |+. ... -.+..++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444455666666666666665532 222 111 23445556666666666666666654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.013 Score=52.66 Aligned_cols=96 Identities=13% Similarity=0.112 Sum_probs=43.0
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhcC--CCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHH-HH
Q 011905 240 LLDGICRL-GSMERALELLGEMEKEG--GDC-SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA-----PNRV-TI 309 (475)
Q Consensus 240 ll~~~~~~-g~~~~a~~~~~~~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~-~~ 309 (475)
+...|-.. |++++|.+.|++....- .+. ..-...+..+...+.+.|++++|.++|++....... .+.. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33445555 66666666666554310 000 001223444555566666666666666665543211 1111 12
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011905 310 STLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~~~~~ 335 (475)
...+-++...||...|.+.+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 22233444556666666666666543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.062 Score=48.82 Aligned_cols=83 Identities=17% Similarity=0.041 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
.+..|.-+...|+...|.++-.+.. -|+...|-..+.+++..+++++..++... . + .+.-|..++.+|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k-K---sPIGyepFv~~~ 247 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K-K---SPIGYEPFVEAC 247 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C-C---CCCChHHHHHHH
Confidence 3444445555566665555555442 35556666666666666666655544321 1 1 113456666666
Q ss_pred HhcCCHHHHHHHHHH
Q 011905 424 CRKNHSVEAAKLARF 438 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~ 438 (475)
.+.|+..+|..++.+
T Consensus 248 ~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK 262 (319)
T ss_pred HHCCCHHHHHHHHHh
Confidence 666666666665555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.004 Score=55.82 Aligned_cols=129 Identities=11% Similarity=0.110 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. ++.+...|...+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~---f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK---FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH---HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHH
Confidence 44555555555555555555555555332 1122333332222 12234444455555555543 2344455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 280 IFCGKGMMKEALGILDRMEALGCAPNR---VTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
.+...|+.+.|..+|++.... +.++. ..|...++.=.+.|+++.+.++.+.+.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555433 21111 2444444444444444444444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.024 Score=51.48 Aligned_cols=51 Identities=12% Similarity=-0.035 Sum_probs=27.4
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHh
Q 011905 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGM 190 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m 190 (475)
+.+..++.+|+..+....+.+. -+..-|..-...+...|++++|.--.+.-
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~ 109 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQS 109 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhh
Confidence 3444556666666666665542 23444555555555556666655544433
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.095 Score=50.99 Aligned_cols=203 Identities=12% Similarity=0.077 Sum_probs=127.4
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccC-CCCCCHh--------hHHHHHHHHHhcCChhHHHHHHHHhccCCCC
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF-DLRPDTI--------IYNNVIRLFCEKGDMIAADELMKGMGLIDLY 196 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~--------~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 196 (475)
.|.+..|..+.......-.++.|+..|-+.... |++.-.. .-..=+.+ --|++++|.+++-+|-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 788999999988888888888998888877663 4321111 11111222 2478889999888876543
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH
Q 011905 197 PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA----NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVV 272 (475)
Q Consensus 197 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 272 (475)
..|....+.||+-.+.++++. -|-.. -...++.+...+.....|++|.+.|......
T Consensus 765 -------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------- 825 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------- 825 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------
Confidence 346667778888877777653 11111 1346777888888888888888877654321
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (475)
...+.++.+..++++...+...+ +.+....-.+.+++.+.|.-++|.+.|-+. +. | .+.+..|.
T Consensus 826 --e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv 889 (1189)
T KOG2041|consen 826 --ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCV 889 (1189)
T ss_pred --HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHH
Confidence 12455666656665555544443 334555666777778888877777665332 21 1 23455667
Q ss_pred hcCCHHHHHHHHHHH
Q 011905 353 RTKRLKEAEKLFSKM 367 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m 367 (475)
..+++.+|.++-++.
T Consensus 890 ~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777776654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00041 Score=49.41 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=8.2
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 011905 240 LLDGICRLGSMERALELLGE 259 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~ 259 (475)
+..+|.+.|++++|.++++.
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 33444444444444444433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0042 Score=51.05 Aligned_cols=64 Identities=14% Similarity=-0.030 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA--NLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...|..+...+...|++++|+..|+........+ ...++..+...|...|++++|++.+++...
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555556666666666666665442221 123566666666666777777776666665
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.012 Score=48.50 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
.+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +.+...+..+.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN---PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHHHH
Confidence 344555555556666666666665554322211 2455566666666666666666666666532 22344455555
Q ss_pred HHHHhcCCHHH
Q 011905 279 QIFCGKGMMKE 289 (475)
Q Consensus 279 ~~~~~~g~~~~ 289 (475)
..+...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 55555555433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.06 Score=47.04 Aligned_cols=58 Identities=7% Similarity=0.039 Sum_probs=34.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
+.+.|.+.|.+..|..-++.+.+.-.+.+........++.+|...|..++|.++...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4455666667766666666666653333334445555666666666666666655544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0034 Score=54.46 Aligned_cols=85 Identities=13% Similarity=0.088 Sum_probs=39.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a 395 (475)
.+.+++.+|+..|.+.++.... |...|..=..+|.+.|.++.|++-.+..+.. .|. ..+|..|-.+|...|++++|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHH
Confidence 3444555555555555543322 3333444444555555555555544444432 222 23444455555555555555
Q ss_pred HHHHHHHHH
Q 011905 396 FCLYEDIEK 404 (475)
Q Consensus 396 ~~~~~~~~~ 404 (475)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 555554444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0066 Score=56.49 Aligned_cols=91 Identities=13% Similarity=0.009 Sum_probs=58.7
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
...+...|+++.|++.|++..... +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 344556677777777777766544 3445566666666777777777777777766653 22555666666677777777
Q ss_pred HHHHHHHHHHHhc
Q 011905 251 ERALELLGEMEKE 263 (475)
Q Consensus 251 ~~a~~~~~~~~~~ 263 (475)
++|...|++..+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776663
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.017 Score=45.67 Aligned_cols=90 Identities=11% Similarity=-0.028 Sum_probs=43.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC
Q 011905 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN 427 (475)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 427 (475)
...+...|++++|.++|+.+.... .-+..-|-.|--++-..|++++|+..|........ .|...+-.+..++...|
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~---ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI---DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCchHHHHHHHHHHHcC
Confidence 333445555555555555554332 11223333344444445555555555555555431 24444555555555555
Q ss_pred CHHHHHHHHHHHHH
Q 011905 428 HSVEAAKLARFMLK 441 (475)
Q Consensus 428 ~~~~A~~~~~~m~~ 441 (475)
+.+.|.+.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.15 Score=49.61 Aligned_cols=277 Identities=15% Similarity=0.098 Sum_probs=130.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 011905 136 FNLCEKARLANEAMWVLRKMPEF-DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 214 (475)
|....+.|++-...++++.--.. .-..-...|+.+...+.....|++|.+.+..-.. ....+.++.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHh
Confidence 44455555555555555432110 0011123455555555555555555555544321 1123444444444
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++-+.+.+.+ +-+....-.+..++.+.|.-++|.+.+-+... |. ..+..|...++|.+|.++-
T Consensus 838 f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~------pk-----aAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 838 FGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL------PK-----AAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred hhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC------cH-----HHHHHHHHHHHHHHHHHHH
Confidence 44444333333 33455566677777888888877776654432 22 2345666677777777765
Q ss_pred HHHHHcCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCh----hhHHHH-HHHH
Q 011905 295 DRMEALGCAPNRVTI--------------STLIKGFCVEGNLDEAYQLIDKVVAG----GSVSSG----GCYSSL-VVEL 351 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~--------------~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~----~~~~~l-i~~~ 351 (475)
+...- |...|. ..-|..+.+.|..-+|-+++.+|.++ +.++-. ....++ +.-+
T Consensus 902 q~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h 977 (1189)
T KOG2041|consen 902 QRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENH 977 (1189)
T ss_pred Hhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHH
Confidence 54321 122221 12234455666666666676666543 322210 011111 1111
Q ss_pred ----------HhcCCHHHHHHHHHHHHHC-------CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCC
Q 011905 352 ----------VRTKRLKEAEKLFSKMLAS-------GVKPDGL--ACSVMIRELCLGGQVLEGFCLYEDIEKI-GFLSSV 411 (475)
Q Consensus 352 ----------~~~g~~~~A~~~~~~m~~~-------~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~ 411 (475)
-+.|..++|..+++.-.-. +.--... .|..|.+--...|.++.|++.--.+.+. .+.|
T Consensus 978 ~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lp-- 1055 (1189)
T KOG2041|consen 978 RQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLP-- 1055 (1189)
T ss_pred HHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCC--
Confidence 1234455555444332210 0111112 2333333344556777776654444443 3444
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 412 DSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
....|+.+..+-|....+...-+.|-++....
T Consensus 1056 P~eiySllALaaca~raFGtCSKAfmkLe~~e 1087 (1189)
T KOG2041|consen 1056 PAEIYSLLALAACAVRAFGTCSKAFMKLEAFE 1087 (1189)
T ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhh
Confidence 46677777666666555555555555555443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.054 Score=45.98 Aligned_cols=84 Identities=7% Similarity=-0.010 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCChhhHHHHHHH
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR--IWLQGPYVDKIVEH 457 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~l~~~ 457 (475)
..++.-|=...-..+|...+..+.+.- ...--.+..-|.+.|.+..|..-++.+++.= .+........++.+
T Consensus 114 ~~li~~yP~S~y~~~A~~~l~~l~~~l------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 114 EELIKRYPNSEYAEEAKKRLAELRNRL------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp HHHHHH-TTSTTHHHHHHHHHHHHHHH------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHCcCchHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 334444444555556655555554421 0111235667888888888888888888762 12222345677888
Q ss_pred HHhcCCHhHHhh
Q 011905 458 LKKSGDEELITN 469 (475)
Q Consensus 458 ~~~~g~~~~a~~ 469 (475)
+.+.|..+.+..
T Consensus 188 y~~l~~~~~a~~ 199 (203)
T PF13525_consen 188 YYKLGLKQAADT 199 (203)
T ss_dssp HHHTT-HHHHHH
T ss_pred HHHhCChHHHHH
Confidence 888888776543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0014 Score=43.84 Aligned_cols=57 Identities=19% Similarity=0.107 Sum_probs=37.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..+...|++++|...|+++.+.. +.+...+..+..++...|++++|..+|+++++..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD---PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS---TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45566677777777777777654 2366667777777777777777777777776554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.025 Score=55.18 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
..|.++.......|++++|...++++.+. .|+...|..+...+...|+.++|.+.+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44555544444556666666666666644 345555666666666666666666666666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.088 Score=44.70 Aligned_cols=51 Identities=8% Similarity=-0.036 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHH
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 432 (475)
+..-|.+.|.+..|..-++.+.+.-...+........++.+|.+.|..+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 344566667777777666666665322111233445566666666666543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.039 Score=41.91 Aligned_cols=55 Identities=27% Similarity=0.310 Sum_probs=27.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
++-..|+.++|+.+|++....|.... ...+-.+...|...|++++|..++++...
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555544322 22333444555555555555555555554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.033 Score=48.74 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=81.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCCchhhH
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG---GQVLEGFCLYEDIEKIGFLSSVDSDIH 416 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 416 (475)
|...|..|...|...|+.+.|...|.+..+.. .++...+..+..++... ....++..+++++...+ +.|+.+.
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D---~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD---PANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC---CccHHHH
Confidence 67789999999999999999999999988642 23445555555554332 35678889999999875 3478888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011905 417 SVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
..|...+...|++.+|...|+.|++.. +++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL-PADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC-CCCCc
Confidence 888889999999999999999999887 44443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.042 Score=53.64 Aligned_cols=138 Identities=10% Similarity=0.032 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 011905 301 GCAPNRVTISTLIKGFCVE-----GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT--------KRLKEAEKLFSKM 367 (475)
Q Consensus 301 ~~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m 367 (475)
+.+.+...|...+++.... ++.+.|..+|++.++.+.. ....|..+..++... .+...+.+...+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 3456677777777765432 2366888888888886543 234444444333322 1233444444443
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 368 LAS-GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 368 ~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
... ....+...|..+.-.....|++++|...++++.+.+ | +...|..+...+...|+.++|.+.+++....+
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--p--s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--M--SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 332 123455677777666667899999999999999976 3 67889999999999999999999999998876
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.16 Score=46.09 Aligned_cols=283 Identities=13% Similarity=0.052 Sum_probs=176.5
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH--HhcCChhHHHHHHHHhccCCCCCChhh--HHHHHHHHHhcCCHHH
Q 011905 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF--CEKGDMIAADELMKGMGLIDLYPDIIT--YVSMIKGFCNAGRLED 217 (475)
Q Consensus 142 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~ 217 (475)
.|+-..|.++-.+-.+. +..|..-.-.|+.+- .-.|+++.|.+-|+.|.. .|.... ...|.-..-+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence 46666666665544321 223555555555443 347999999999999975 232221 2233333456788888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHH--HHHHHHHHHh---cCCHHHHHH
Q 011905 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT--YTSVIQIFCG---KGMMKEALG 292 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~li~~~~~---~g~~~~a~~ 292 (475)
|.+.-+.....-. --...+...+...|..|+|+.|+++++.-.+. .-+.+++.- -..|+.+-.. .-+...|.+
T Consensus 173 Ar~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~-~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 173 ARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAA-KVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHH-HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 8888887766532 24567888999999999999999999877653 223344322 2223322211 224555555
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-C
Q 011905 293 ILDRMEALGCAPNRV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA-S 370 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~ 370 (475)
.-.+..+ +.||.. .-..-..++.+.|++.++-.+++.+-+....|+.. .+-.+.+.|+ .+..-+++..+ .
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHH
Confidence 5444433 445532 22344577889999999999999999987776432 2222344454 44444444433 2
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH-hcCCHHHHHHHHHHHHHc
Q 011905 371 GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC-RKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~ 442 (475)
.++|| ..+...+..+-...|++..|+.--+...+.. |....|-.|.+.-. ..|+-.++..++-+..+.
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~----pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA----PRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC----chhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 34555 4566667778888999999888777776642 36677777776654 459999999988887765
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.018 Score=50.76 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=51.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
|...+..+.+.|++++|...|+.+++. .|+. ..+-.+..+|...|++++|...|+.+.+.....+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 444443334456666666666666544 2332 2444555556666666666666666665432111223344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 011905 420 LLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
...+...|++++|.+++++.++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555666666666666666655
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.026 Score=45.01 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVD 452 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~ 452 (475)
....++..+...|++++|..+.+.+.... +.+...|..++.+|...|+..+|.+.|+++.. .|+.|++.+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34556667778889999999998888875 34788889999999999999999988877753 48888887655
Q ss_pred HH
Q 011905 453 KI 454 (475)
Q Consensus 453 ~l 454 (475)
..
T Consensus 141 l~ 142 (146)
T PF03704_consen 141 LY 142 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0026 Score=43.04 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=32.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..|++++|.++|+++.+.. +.+...+..+..+|.+.|++++|.++++++....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN---PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4566666666666666653 2255556666666666666666666666666554
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0022 Score=43.33 Aligned_cols=49 Identities=24% Similarity=0.396 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 319 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
.|++++|.++|+.+...... +...+..+..+|.+.|++++|.++++++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444443322 33334444444444444444444444444
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.16 Score=43.55 Aligned_cols=132 Identities=10% Similarity=0.003 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH-----H
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA-----L 240 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~-----l 240 (475)
+-+.++..+...|.+.-...++.+.++...+.+......|++.-.+.||.+.|...|++..+..-..|..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34455556666666666677777766655445555666666666777777777777776554322233333322 2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
...|.-.+++.+|...++++...+ +.|...-|.-.-+..-.|+..+|++.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D---~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD---PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC---CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 233445566666666666666543 234444444444444456666666666666654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0099 Score=51.67 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=64.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
+.+.+++.+|+..|.+..+.. +-|.+.|..-..+|++.|.++.|++-.+..+..+.. -..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 455667777777777766652 235556666667777777777777766666664432 245677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~ 385 (475)
++.|++.++ +.|+..+|..=+..
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHHHH
Confidence 777777663 36666666554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.23 Score=45.16 Aligned_cols=110 Identities=16% Similarity=0.097 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
.+.+..|.-+...|+...|.++-.+. -.|+...|..-+.+|+..+++++-.++... +-.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 34555566677788888777776554 246788888899999999999887765432 12336788888889
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
.+.|+..+|..+...+ + +..-+..|.+.|++.+|.+...+
T Consensus 248 ~~~~~~~eA~~yI~k~------~------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI------P------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHCCCHHHHHHHHHhC------C------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 8999988888877661 1 24566778888888888776433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.39 Score=47.41 Aligned_cols=319 Identities=15% Similarity=0.084 Sum_probs=178.3
Q ss_pred HhcCCccCHHhHHH-----HHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh--hHHHH-HHHHhcc
Q 011905 121 KEEGCVVSVKMMKV-----IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM--IAADE-LMKGMGL 192 (475)
Q Consensus 121 ~~~~~~~~~~~~~~-----li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~--~~a~~-~~~~m~~ 192 (475)
..-|++.+..-|.. +|+-+...+.+..|.++-+.+...-.. ....|.....-+.+..+. +.+.+ +-+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34677888777765 466777788899999998887642111 145666666666665322 22333 3333332
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC
Q 011905 193 IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA----ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS 268 (475)
Q Consensus 193 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 268 (475)
.. -+...|..+.+-....|+.+-|..+++.=...+-. .+..-+...+.-+.+.|+.+-...++-.+..+
T Consensus 503 -~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~----- 575 (829)
T KOG2280|consen 503 -KL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK----- 575 (829)
T ss_pred -cC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH-----
Confidence 12 34456777777777889999888887643222211 11122344555566677777666666655542
Q ss_pred CcHHHHHHHH----------HHHHhc------------CCHHHHHHHHH--HHH----HcCCCCCHHHHHHHHHHHHhcC
Q 011905 269 PNVVTYTSVI----------QIFCGK------------GMMKEALGILD--RME----ALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 269 ~~~~~~~~li----------~~~~~~------------g~~~~a~~~~~--~m~----~~~~~p~~~~~~~li~~~~~~~ 320 (475)
.+...+...+ .-+++. ++-.++..-|. ... ..|..|+ ......++.+..
T Consensus 576 ~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk 652 (829)
T KOG2280|consen 576 LNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSK 652 (829)
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhh
Confidence 1111111111 111111 11111111111 000 0122222 223333444433
Q ss_pred CHHH----------HHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011905 321 NLDE----------AYQLIDKVVA-GGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389 (475)
Q Consensus 321 ~~~~----------a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 389 (475)
...- -+++.+.+.. .+..-...+.+--+..+...|+..+|.++-.+.+ -||-..|-.-+.+++..
T Consensus 653 ~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 653 EKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhh
Confidence 3111 1222222221 1222233345666677788899999999888775 68888888888999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhh
Q 011905 390 GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
+++++-+++-+..+. +.-|...+.+|.+.|+.+||.+++-+.- +.+ -...+|.+.|++.+|.+
T Consensus 729 ~kweeLekfAkskks--------PIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 729 KKWEELEKFAKSKKS--------PIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhHHHHHHHHhccCC--------CCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHH
Confidence 999886655443321 2458888999999999999999876642 111 45667777777777765
Q ss_pred cc
Q 011905 470 LP 471 (475)
Q Consensus 470 l~ 471 (475)
+.
T Consensus 792 ~A 793 (829)
T KOG2280|consen 792 LA 793 (829)
T ss_pred HH
Confidence 53
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.13 Score=41.55 Aligned_cols=127 Identities=12% Similarity=0.044 Sum_probs=58.8
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CCChhhHHH
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPDIITYVS 204 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~ 204 (475)
.|++.---.|..+..+.|+..+|...|++...--+..|....-.+.++....+++..|...++++.+... ..+..+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444444555555555555555555554433334444445555555555555555555555543220 011223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
+.+.+...|....|+..|+..... -|+...-......+.+.|+.+++.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 445555555555555555555443 233333333334444455444443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0048 Score=41.82 Aligned_cols=64 Identities=16% Similarity=0.022 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 011905 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN-HSVEAAKLARFMLKK 442 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~ 442 (475)
...|..+...+...|++++|+..|++..+.+ +.+...|..+..++.+.| ++++|++.+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3455666666667777777777777777654 235666667777777776 577777777766654
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.017 Score=52.39 Aligned_cols=134 Identities=13% Similarity=0.051 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHH
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVA----GGS-VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA----SG-VKPDGL 377 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~ 377 (475)
.|..|-..|.-.|+++.|....+.-+. -|- ......+..|..++.-.|+++.|.+.|+.-.. .| -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 345555556666888888877654332 121 11235677788888888999988888876542 22 123345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEK----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+.-+|-..|.-..++++|+.++.+-.. .+-. .-....+..|..+|...|..+.|+.+....+..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dr-iGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDR-IGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 566677777777788888877765332 1100 014567778888888889999988877666543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.026 Score=49.79 Aligned_cols=99 Identities=16% Similarity=0.040 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN--LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
|...+..+.+.|++++|...|+.+.+.-.... ...+-.+...|...|++++|...|..+.....+.+.....+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333445666666666666655421110 2344555566666666666666666665432111122333333444
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011905 280 IFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.+...|+.++|..+|+.+.+.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555556666666666555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0046 Score=41.32 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=21.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
+.+.|++++|...|+.+++.... +...+..+..++...|++++|...|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444444444444444443311 33334444444444444444444444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.19 Score=46.32 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGG-DCSPNVVTYTSVIQIFCG---KGMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
..+...++-.|-...+++...++++.+..... .+......-....-++-+ .|+.++|++++..+......+++.+|
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 33444556668888888888888888877310 011122222233445555 78888888888876655566777777
Q ss_pred HHHHHHHH
Q 011905 310 STLIKGFC 317 (475)
Q Consensus 310 ~~li~~~~ 317 (475)
..+.+.|-
T Consensus 221 gL~GRIyK 228 (374)
T PF13281_consen 221 GLLGRIYK 228 (374)
T ss_pred HHHHHHHH
Confidence 77666553
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.17 Score=40.89 Aligned_cols=131 Identities=15% Similarity=0.099 Sum_probs=70.6
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHH
Q 011905 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSL 347 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 347 (475)
|++..--.+..++...|+..+|...|++...--..-|....-.+.++....++...|...++.+.+....- +....-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 55555555566666666666666666665543334455555566666666666666666666665543100 12223445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 348 VVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYED 401 (475)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (475)
...|...|++.+|...|+..... .|+...-...-..+.+.|+.+++..-+.+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 55666666666666666666644 44444333333344556655555443333
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.25 Score=42.36 Aligned_cols=131 Identities=13% Similarity=0.058 Sum_probs=62.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH-----
Q 011905 274 YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV----- 348 (475)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li----- 348 (475)
.+.++..+.-.|.+.-..+++.+..+...+.++.....|.+.-.+.||.+.|...|+...+..-..+..+.+.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 344444455555555555566555555444455555555555556666666666666554433233333233222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 349 VELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
..|.-.+++..|...+.+....+ .-|....|.-.-+....|+..+|.+..+.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22333445555555555544332 112223332222233345555555555555554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.011 Score=40.04 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG-MMKEALGILDRME 298 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~ 298 (475)
.+|..+...+.+.|++++|+..|++..+.. +.+...|..+..++...| ++++|++.++...
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD---PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444444444444444444444422 223444444444444444 3444444444433
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.015 Score=39.89 Aligned_cols=57 Identities=12% Similarity=-0.022 Sum_probs=40.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 384 RELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|.+.++..++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD---PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45667777777777777777764 2356667777777777777777777777777665
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.17 Score=44.41 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=48.4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCChhhHH
Q 011905 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG---NLDEAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
-|...|-.|..+|...|+.+.|..-|....+.. .++...+..+..++.... +-.++..+|+++++.+.. +..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 445555555555555555555555555544431 223333333333333221 233455555555554432 444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4555555555555555555555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.019 Score=52.06 Aligned_cols=130 Identities=12% Similarity=-0.025 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCCc
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKML----ASGVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIE----KIGFLSSVD 412 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 412 (475)
.+|..|...|.-.|+++.|+..-+.-+ +.|-+ .....+..|-.++.-.|+++.|.+.|+... +.|-. .+.
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r-~vE 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR-TVE 274 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch-hHH
Confidence 457777777888899999987655432 22322 223567778888888999999999888654 33432 234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKK-----RIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
......|...|.-..++++|+.++++-+.. ..--....+.++..++...|..+.|..++.
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 455566788888888999999988765432 112345678889999999999999876653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.018 Score=46.01 Aligned_cols=70 Identities=26% Similarity=0.375 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME-----ALGCAPNRVT 308 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 308 (475)
+...++..+...|++++|..+...+.... |.+...|..+|.+|...|+..+|.++|+.+. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44556666677777777777777777643 4566777777777777777777777776654 3477776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.04 Score=42.31 Aligned_cols=53 Identities=9% Similarity=0.014 Sum_probs=35.4
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
...|+..+..+++.+|+..|++..|+++++...+. .+++-+..+|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~-Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK-YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Confidence 34567777777777777777777777777777665 346666666766666443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.21 Score=37.90 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
..+..+...|+-+.-.+++.++.+.+ ++++...-.+..||.+.|+..++.+++.++-+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33444445555555555555444322 3444444445555555555555555555555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.079 Score=40.69 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHH
Q 011905 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG-GSVSSGGCYSSLVVE 350 (475)
Q Consensus 301 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~ 350 (475)
...|+..+..+++.+|+..+++..|.++++...+. ++..+..+|..|++-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455555555555555555555555555544432 233334445444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.2 Score=47.87 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011905 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 173 (475)
....+.+++.|...|.++.|+++..+-. .-.....+.|+++.|.++-+.. .+...|..|.+.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~ 356 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE 356 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence 3446666777777777777766644321 1245566677777776665544 255577777777
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011905 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
..+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+.....|- ++....++.-.|+.++.
T Consensus 357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c 421 (443)
T PF04053_consen 357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC 421 (443)
T ss_dssp HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence 7777777777777766543 44566666666776666666666655541 33344444445666666
Q ss_pred HHHHHHH
Q 011905 254 LELLGEM 260 (475)
Q Consensus 254 ~~~~~~~ 260 (475)
.+++.+.
T Consensus 422 v~lL~~~ 428 (443)
T PF04053_consen 422 VDLLIET 428 (443)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6655443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.68 Score=45.00 Aligned_cols=89 Identities=21% Similarity=0.221 Sum_probs=43.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
+-+...+.-|-++|..|-+. ..+++.....+++++|..+-+...+. .|| .|..-.+-++...++++|
T Consensus 757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHHhhhhhhHHHH
Confidence 33444555555565555421 23445555666666666655544321 121 133333444444455444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
.+ +|.++|+-.+|.++++++..
T Consensus 824 qk----------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 824 QK----------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HH----------------------HHHHhcchHHHHHHHHHhhh
Confidence 44 44555666666666666554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.014 Score=40.64 Aligned_cols=64 Identities=20% Similarity=0.051 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
+++.+...|...|++++|+..+++..+. |-..+.-..++..+..++...|++++|++++++..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555666666666666555532 111000144566666666667777777776666543
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.61 Score=40.16 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=76.9
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----
Q 011905 282 CGKGMMKEALGILDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT----- 354 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 354 (475)
.+.|++++|.+.|+.+.... -+-...+.-.++.++.+.++++.|...+++.+...+.....-|..-|.+++.-
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 45566666666666665431 11123444555556666666666666666665543322222244444443321
Q ss_pred --CCHHH---HHHHHHHHHHC----CCCCCHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 011905 355 --KRLKE---AEKLFSKMLAS----GVKPDGLAC------------SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413 (475)
Q Consensus 355 --g~~~~---A~~~~~~m~~~----~~~p~~~~~------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 413 (475)
.+... |..-|++.+.. ...||...- ..+.+-|.+.|.+..|..-+++|.+.-...+...
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~ 204 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVR 204 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchH
Confidence 22222 33333333332 112222211 1223345666777777777777776522211233
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
..+-.+..+|...|-.++|.+.-.-
T Consensus 205 eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 205 EALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHH
Confidence 4455566667777777776665433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.37 Score=40.93 Aligned_cols=146 Identities=13% Similarity=0.145 Sum_probs=83.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhh
Q 011905 87 QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 166 (475)
.+++.--...|......+...++++++...+....+ +..-+..-|. ....++.|.-+.++|.+. +--+..
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl 93 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDL 93 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHH
Confidence 344545566788888888889999999887776543 1122222221 123345666666666552 122345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CC--CCcCHHHHHHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR---HG--CAANLVAYSALL 241 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g--~~~~~~~~~~ll 241 (475)
|+.....|..+|.++.|-..+++.-+ ..+..++++|+++|++... .+ ...-...+..+-
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 66677788888888887777766532 1133455666666665432 11 011123344555
Q ss_pred HHHHhcCChHHHHHHHH
Q 011905 242 DGICRLGSMERALELLG 258 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~ 258 (475)
+.+.+...+++|-..+.
T Consensus 158 r~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFL 174 (308)
T ss_pred hHhhhhHHhhHHHHHHH
Confidence 56666666666655544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.041 Score=37.60 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=24.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
|.+.+++++|.++++.++..++. +...+.....++.+.|++++|.+.++...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444444444444444322 333344444444444444444444444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.2 Score=41.45 Aligned_cols=85 Identities=4% Similarity=-0.048 Sum_probs=65.8
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 205 (475)
+-|..+|-.||.-+...+..++..+++++|..- .+--...|..-+.+=...+++.....+|.+..... .+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence 678899999999999999999999999999862 23344577777877777789999999999887654 456667666
Q ss_pred HHHHHhcC
Q 011905 206 IKGFCNAG 213 (475)
Q Consensus 206 i~~~~~~~ 213 (475)
+.--.+.+
T Consensus 116 l~YIRr~n 123 (660)
T COG5107 116 LEYIRRVN 123 (660)
T ss_pred HHHHHhhC
Confidence 66544433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.28 Score=46.89 Aligned_cols=25 Identities=12% Similarity=0.065 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFK 223 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~ 223 (475)
...|..|.....+.|+++-|++.|.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.53 Score=37.13 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=40.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011905 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
.++..+.+.+.......+++.+...+. .+...++.++..|++.+ ..+..+.+.. . .+..-...++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 455555555666666666666655542 44555566666665442 2222233321 0 11112333555555555
Q ss_pred CHHHHHHHHHHH
Q 011905 356 RLKEAEKLFSKM 367 (475)
Q Consensus 356 ~~~~A~~~~~~m 367 (475)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.4 Score=41.11 Aligned_cols=194 Identities=9% Similarity=0.060 Sum_probs=97.1
Q ss_pred HHhcCChhHHHHHHHHHHhc--CCcc-----------CHHh-HHHHHHHHHhcCCHHHHHHHHHhcccC----CCCCCHh
Q 011905 104 SRIKQNPSIIIDVVEAYKEE--GCVV-----------SVKM-MKVIFNLCEKARLANEAMWVLRKMPEF----DLRPDTI 165 (475)
Q Consensus 104 ~~~~~~~~~a~~~~~~~~~~--~~~~-----------~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~~~~~ 165 (475)
.-+.+.++.|.+.+...... +-.+ +... =+..++.+...|++.++..++++|... ...-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34567788888877766543 2221 1222 234556788899999999988887653 3447888
Q ss_pred hHHHHHHHHHhcC--------C-------hhHHHHHHHHhccC------CCCCChhhHHHHHHHHHhc--CCHHHHHHHH
Q 011905 166 IYNNVIRLFCEKG--------D-------MIAADELMKGMGLI------DLYPDIITYVSMIKGFCNA--GRLEDACGLF 222 (475)
Q Consensus 166 ~~~~ll~~~~~~g--------~-------~~~a~~~~~~m~~~------~~~~~~~~~~~li~~~~~~--~~~~~a~~~~ 222 (475)
+|+.++-.+++.= . ++.+.-...+|... .+.|.......++....-. ....--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 8988666655431 1 12222222233211 1223333333333322211 1122223333
Q ss_pred HHHHHCCCCcCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 223 KVMKRHGCAANLVA-YSALLDGICRLGSMERALELLGEMEKEGG--DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 223 ~~m~~~g~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
+.....-+.|+-.. ...+...+.+ +.+++..+.+.+..... -...-+.++..++....+.++..+|-+.+.-+..
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33333334454332 2223333333 45555555544433100 0011234566777777777777777777766654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.076 Score=45.82 Aligned_cols=47 Identities=13% Similarity=0.090 Sum_probs=30.1
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 011905 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL-EDACGLFKVMKR 227 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 227 (475)
+-+++++++|...|+-||-.+-..|++++.+.+-. .+..++.-.|.+
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 34677777777777777777777777777766653 344444444443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.4 Score=40.79 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCC---CCCCHhhHHHHHHHHHh---cCChhHHHHHHHHhccCCCCCChhhHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFD---LRPDTIIYNNVIRLFCE---KGDMIAADELMKGMGLIDLYPDIITYVS 204 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~ 204 (475)
+...++-+|....+++..+++.+.+.... +.-+...-....-++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33344446777777777777777776531 11122222233344455 6777777777777444444566667666
Q ss_pred HHHHH
Q 011905 205 MIKGF 209 (475)
Q Consensus 205 li~~~ 209 (475)
+.+.|
T Consensus 223 ~GRIy 227 (374)
T PF13281_consen 223 LGRIY 227 (374)
T ss_pred HHHHH
Confidence 66554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.39 Score=46.57 Aligned_cols=196 Identities=15% Similarity=0.138 Sum_probs=103.2
Q ss_pred HHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhc--
Q 011905 114 IDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG-- 191 (475)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-- 191 (475)
+.-+++++++|-.|+... +...|+-.|.+.+|.++|.+--. . |..+..|.....++.|.+++..-.
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~---e------nRAlEmyTDlRMFD~aQE~~~~g~~~ 687 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGH---E------NRALEMYTDLRMFDYAQEFLGSGDPK 687 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCc---h------hhHHHHHHHHHHHHHHHHHhhcCChH
Confidence 334566777887777654 34456667778888888865422 1 223334444444444444332110
Q ss_pred -------c-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH------HHHCCC---CcCHHHHHHHHHHHHhcCChHHHH
Q 011905 192 -------L-IDLYPDIITYVSMIKGFCNAGRLEDACGLFKV------MKRHGC---AANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 192 -------~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~------m~~~g~---~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
+ ....-+..-=.+....+...|+.++|..+.-+ +.+.+- ..+..+...+..-+.+...+.-|-
T Consensus 688 eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 688 EKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHH
Confidence 0 00000111111233444455666666554321 111111 124455555666666777888899
Q ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-----------HHHHHHHHHhcCCHH
Q 011905 255 ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT-----------ISTLIKGFCVEGNLD 323 (475)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------~~~li~~~~~~~~~~ 323 (475)
++|.+|-.. ..+++.....++|++|+.+-+...+. .||... |...-.+|-+.|+-.
T Consensus 768 eIF~k~gD~-----------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~ 834 (1081)
T KOG1538|consen 768 EIFLKMGDL-----------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQR 834 (1081)
T ss_pred HHHHHhccH-----------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchH
Confidence 999888552 34667778889999999998876653 344321 122223455555555
Q ss_pred HHHHHHHHHHh
Q 011905 324 EAYQLIDKVVA 334 (475)
Q Consensus 324 ~a~~~~~~~~~ 334 (475)
+|.++++++..
T Consensus 835 EA~~vLeQLtn 845 (1081)
T KOG1538|consen 835 EAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHhhh
Confidence 55555555543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.042 Score=38.22 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEG--GD-CSPN-VVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+|+.+...|...|++++|++.|++..+.. .+ -.|+ ..++..+..++...|++++|++.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455555555555555555555444310 00 0011 23344444444555555555555444
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.25 Score=42.79 Aligned_cols=99 Identities=17% Similarity=0.111 Sum_probs=54.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVK--PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
.|+.-+..| +.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.+.....+.-...+-.+.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 355444433 455566666666666654110 01223444556666666666666666666654332222345555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 011905 421 LGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+..+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666666666666666666655
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.69 Score=44.92 Aligned_cols=163 Identities=15% Similarity=0.068 Sum_probs=105.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCccCH------HhHHHHHHHHH----hcCCHHHHHHHHHhcccCCCCCCHhh
Q 011905 97 YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSV------KMMKVIFNLCE----KARLANEAMWVLRKMPEFDLRPDTII 166 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~----~~~~~~~A~~~~~~m~~~~~~~~~~~ 166 (475)
+..+++.++-.||-+..++++....+.+-.-.+ -.|..++..+. .....+.|.++++.+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 557888888888888888888876653322122 23333333322 245678899999998875 366655
Q ss_pred HHH-HHHHHHhcCChhHHHHHHHHhccCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH-
Q 011905 167 YNN-VIRLFCEKGDMIAADELMKGMGLIDL---YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL- 241 (475)
Q Consensus 167 ~~~-ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll- 241 (475)
|.. -.+.+...|++++|++.|++...... +.....+--+.-.+.-.++|++|...|..+.+..-- +..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 543 34566678999999999997654211 122334445666777889999999999999875321 333343332
Q ss_pred HHHHhcCCh-------HHHHHHHHHHHh
Q 011905 242 DGICRLGSM-------ERALELLGEMEK 262 (475)
Q Consensus 242 ~~~~~~g~~-------~~a~~~~~~~~~ 262 (475)
.++...|+. ++|.++|.++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 334456666 888999988765
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.059 Score=42.91 Aligned_cols=92 Identities=14% Similarity=-0.035 Sum_probs=71.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
..--+...|++++|..+|.-+.-.+. -+..-+..|..++-..+++++|...|......+.. |...+-....+|...
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~---dp~p~f~agqC~l~l 118 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN---DYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC---CCCccchHHHHHHHh
Confidence 33445688999999999999886542 24555666666777789999999999988776532 444466678899999
Q ss_pred CCHHHHHHHHHHHHHc
Q 011905 427 NHSVEAAKLARFMLKK 442 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~ 442 (475)
|+.+.|...|...+..
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 9999999999999884
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.84 Score=35.95 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=13.9
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHh
Q 011905 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK 141 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 141 (475)
.+.+......++.+...+ ..+...++.++..|++
T Consensus 20 ~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 20 RNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred CCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 334444444444444333 2333444444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.5 Score=45.84 Aligned_cols=153 Identities=18% Similarity=0.125 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG------GCYSSLVVELVR----TKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~ 378 (475)
+..++....-.||-+.+++.+.+..+.+-.-.. -.|+.++..++. ....+.|.+++..+.+. .|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 455666667778888888777776553211111 234444444443 34677888888888865 677666
Q ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHc-CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH-HHH
Q 011905 379 CSVMI-RELCLGGQVLEGFCLYEDIEKI-GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD-KIV 455 (475)
Q Consensus 379 ~~~li-~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~l~ 455 (475)
|...- +.+...|++++|.+.+++.... ..-+......+--+..++.-.++|++|.+.|..+.+.. .-+..+|. ...
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 65443 3456678888888888865531 11112344556667777788888888888888888876 33444444 334
Q ss_pred HHHHhcCCH
Q 011905 456 EHLKKSGDE 464 (475)
Q Consensus 456 ~~~~~~g~~ 464 (475)
-++...|+.
T Consensus 348 ~c~~~l~~~ 356 (468)
T PF10300_consen 348 ACLLMLGRE 356 (468)
T ss_pred HHHHhhccc
Confidence 445556666
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.11 Score=44.82 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=48.7
Q ss_pred CcCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC----------------CHHH
Q 011905 231 AANLVAYSALLDGICRL-----GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG----------------MMKE 289 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~ 289 (475)
+-|-..|-..+..+... +.++-....+..|.+ .|+..|..+|+.|++.+-+.. +-+-
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e--yGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C 141 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE--YGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC 141 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH--hcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence 44556666666666533 445555555666666 556667777777766654432 1223
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011905 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 320 (475)
+++++++|...|+.||..+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4555555555555555555555555555444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.59 E-value=1.5 Score=38.64 Aligned_cols=145 Identities=17% Similarity=0.102 Sum_probs=81.4
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.....|++.+|..+|+....... -+...--.+..+|...|+.+.|..++..+....-.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 44566777777777777665432 23445556777777888888888888777543212222222223344444444444
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011905 218 ACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 218 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
...+-.+.-.. +-|...-..+...+...|+.++|.+.+-.+.+++.+. -|...-..++..+...|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCC
Confidence 44444444332 2255555666777777777777777776666643332 334445555655555553
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.99 Score=36.13 Aligned_cols=118 Identities=12% Similarity=0.001 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHcCCCC------CHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011905 286 MMKEALGILDRMEALGCAP------NRVTI---STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p------~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
+.++..+.+.+....|..+ +..+. -....-+...|++++|..+|.-+...++. +..-+..|..++-..++
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHH
Confidence 4455555555555555322 11122 22333456789999999999999887654 56667888888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+++|+..|......+. -|...+-..-.++...|+.+.|+..|+...+.
T Consensus 87 y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 87 FQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 9999999988765442 34444556677889999999999999998883
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.3 Score=44.69 Aligned_cols=96 Identities=18% Similarity=0.065 Sum_probs=67.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
+++.+..+|.+.+++.+|++...+.++.+ .+|....-.=-.+|...|+++.|+..|+++++.. | .|..+-+.++.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P-~Nka~~~el~~l 334 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--P-SNKAARAELIKL 334 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--C-CcHHHHHHHHHH
Confidence 46777788888888888888888888764 4555555555677888888888888888888864 3 355666666666
Q ss_pred HHhcCCHHHH-HHHHHHHHHc
Q 011905 423 LCRKNHSVEA-AKLARFMLKK 442 (475)
Q Consensus 423 ~~~~g~~~~A-~~~~~~m~~~ 442 (475)
--+..++.+. .++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 5555444443 6777777754
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.43 Score=41.40 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=42.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCA--ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (475)
+.|++..|...|...++.... -....+-.|..++...|++++|..+|..+.+.....+.-...+--+..+..+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 444455555555555543211 112233445555555555555555555555532222222233444444455555555
Q ss_pred HHHHHHHHHHH
Q 011905 289 EALGILDRMEA 299 (475)
Q Consensus 289 ~a~~~~~~m~~ 299 (475)
+|..+|++..+
T Consensus 233 ~A~atl~qv~k 243 (262)
T COG1729 233 EACATLQQVIK 243 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.47 E-value=4.1 Score=42.93 Aligned_cols=77 Identities=14% Similarity=0.081 Sum_probs=37.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGL--ACSVMIRELCLGGQVL 393 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~ 393 (475)
+.....+++|--.|+..-+ ..--+.+|..+|++++|+.+..++... -|.. +--.|..-+...++.-
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 3344555555555544311 223445566666666666666555311 1111 1133445555566666
Q ss_pred HHHHHHHHHHH
Q 011905 394 EGFCLYEDIEK 404 (475)
Q Consensus 394 ~a~~~~~~~~~ 404 (475)
+|-++..+...
T Consensus 1017 eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1017 EAAKILLEYLS 1027 (1265)
T ss_pred hHHHHHHHHhc
Confidence 66655555544
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.38 E-value=2 Score=38.75 Aligned_cols=129 Identities=11% Similarity=0.144 Sum_probs=58.0
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHh--cCC----HHHHHHHHHHHHHCCC---CcCHHHHHHHHHHHHhcCC--
Q 011905 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCN--AGR----LEDACGLFKVMKRHGC---AANLVAYSALLDGICRLGS-- 249 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~~----~~~a~~~~~~m~~~g~---~~~~~~~~~ll~~~~~~g~-- 249 (475)
++.+.+++.|.+.|+.-+..+|-+..-.... ..+ ...|..+|+.|++... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445556666666666665555442222222 111 4456677777776542 2334444444433 2222
Q ss_pred --hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHH
Q 011905 250 --MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM--MKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 250 --~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
.+.++.+|+.+...|..-.-+......++.......+ ..++.++++.+.+.|+++....|..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 3445555555555332211122222222222211111 2355556666666666555554443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.34 E-value=3.4 Score=41.19 Aligned_cols=325 Identities=13% Similarity=0.060 Sum_probs=184.1
Q ss_pred CCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCH--HHHHHHHH-hcccCCC
Q 011905 89 SYRHSSFMYNR-----ACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLA--NEAMWVLR-KMPEFDL 160 (475)
Q Consensus 89 ~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~--~~A~~~~~-~m~~~~~ 160 (475)
|.+-+...|.. ++..+...+.+..|+++-..+...-..- ...|......+.+..+. +++++.++ ++... .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~ 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C
Confidence 55556666654 3455666778888888776653322111 45565566666655322 23333333 33221 2
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------
Q 011905 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY----PDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG------- 229 (475)
Q Consensus 161 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------- 229 (475)
....+|..+.+-....|+.+.|..+++.=...+.. .+..-+...+.-+.+.||.+-...++-.+.++-
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 34557788888888899999999988653322211 122335566677778888888777777666531
Q ss_pred ----CCcCHHHHHHHHH--------HHHhcCChHHHHHHHHHHH--hcCCCCCCcHHHHHHHHHHHHhcCC---------
Q 011905 230 ----CAANLVAYSALLD--------GICRLGSMERALELLGEME--KEGGDCSPNVVTYTSVIQIFCGKGM--------- 286 (475)
Q Consensus 230 ----~~~~~~~~~~ll~--------~~~~~g~~~~a~~~~~~~~--~~~~~~~~~~~~~~~li~~~~~~g~--------- 286 (475)
.+.....|.-+++ .+.+.++-.++...|..-. .... +.+-..........+.+...
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~-~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAET-IEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhh-hcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 1111122222221 1112222222222221100 0000 00111112223333443332
Q ss_pred -HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 287 -MKEALGILDRME-ALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 287 -~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 364 (475)
..+-+.+.+.+. +.|......+.+--+.-+...|+-.+|.++-.+.. .||...|-.=+.+++..+++++-+++-
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 112222233332 22434444556666667778899999988776653 467788888899999999999888877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 365 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
+.+. .+.-|...+.+|.+.|+.++|.+++-+... +.-.+.+|.+.|++.+|.++--+
T Consensus 739 kskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 739 KSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----------hHHHHHHHHHhccHHHHHHHHHH
Confidence 6653 135677789999999999999888754432 22577889999999999877543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.6 Score=41.62 Aligned_cols=153 Identities=16% Similarity=0.044 Sum_probs=103.2
Q ss_pred hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHH----HHHHHHHhcCCHH
Q 011905 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYV----SMIKGFCNAGRLE 216 (475)
Q Consensus 141 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~----~li~~~~~~~~~~ 216 (475)
-.|.+.+|-..++++.+. ++.|...++..=+++.-.|+.+.-...++++...- .+|...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence 467778888888888763 46688888888888888998888888888876531 34443332 3334456788889
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCC--CcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCS--PNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+|++.-++..+.+ +.|.....++...+--.|++.++.+++.+-... .... .-..-|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9988888877765 347777778888888889999998887665432 1000 01112333344455668888999998
Q ss_pred HHH
Q 011905 295 DRM 297 (475)
Q Consensus 295 ~~m 297 (475)
+.-
T Consensus 271 D~e 273 (491)
T KOG2610|consen 271 DRE 273 (491)
T ss_pred HHH
Confidence 653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.098 Score=48.89 Aligned_cols=98 Identities=16% Similarity=-0.027 Sum_probs=70.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|++.+++..+.+ + ..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n----~~ 145 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--N----LK 145 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--c----hh
Confidence 4567889999999999999999999998865 5664 358888899999999999999999999853 1 12
Q ss_pred HHHHHH--HHHhcCCHHHHHHHHHHHHHcCCC
Q 011905 416 HSVLLL--GLCRKNHSVEAAKLARFMLKKRIW 445 (475)
Q Consensus 416 ~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~ 445 (475)
|..+.. .+....+..+..++++.+.+.|.+
T Consensus 146 f~~i~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 146 FSTILNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HHHHHhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 332111 011223344667777777777743
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.62 Score=43.76 Aligned_cols=66 Identities=11% Similarity=-0.014 Sum_probs=50.0
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHhccC
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDT----IIYNNVIRLFCEKGDMIAADELMKGMGLI 193 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~ 193 (475)
+.+...++.+..+|.+.|++++|+..|++..+.+ |+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567777778888888888888888888877653 442 34777888888888888888888887753
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.10 E-value=1.1 Score=34.17 Aligned_cols=136 Identities=12% Similarity=0.191 Sum_probs=68.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHH---HHHHHHHHHhcCCH
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVT---YTSVIQIFCGKGMM 287 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~ 287 (475)
-.|..++..++..+.... .+..-+|.+|.-....-+-+...++++.+-+- -|... ...++..|+..|.
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki-----FDis~C~NlKrVi~C~~~~n~- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI-----FDISKCGNLKRVIECYAKRNK- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG-----S-GGG-S-THHHHHHHHHTT--
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh-----cCchhhcchHHHHHHHHHhcc-
Confidence 356667777777766654 25555666665555555555566666655442 12211 1122333333322
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
+...+...+......|+-+.-.+++.++.+ .-.+++.....+..+|.+.|+..++.+++.+.
T Consensus 85 -----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 85 -----------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 223344555666666777777777766654 22345556666667777777777777777777
Q ss_pred HHCCCC
Q 011905 368 LASGVK 373 (475)
Q Consensus 368 ~~~~~~ 373 (475)
-+.|++
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 666653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.086 Score=31.78 Aligned_cols=39 Identities=18% Similarity=-0.018 Sum_probs=24.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+|..+...|.+.|++++|.++++++++.. |-++..+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 45566666667777777777777776665 4444444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.87 E-value=3.7 Score=39.09 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=27.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKVVAGGSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
+..++.+.|+.++|.+.+.+|.+.... ........|+.++...+++.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444555555555555555543221 12234444555555555555555555554
|
The molecular function of this protein is uncertain. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.7 Score=45.49 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchh--hHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSD--IHSVLLL 421 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~li~ 421 (475)
|.+....+...+.+++|.-+|+..-+ ..-.+.+|..+|++.+|+.+..++.... +.. +-..|+.
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-----de~~~~a~~L~s 1007 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-----DELVILAEELVS 1007 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-----HHHHHHHHHHHH
Confidence 44444555566777777766665421 2234667777888888887777665421 211 2245666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 011905 422 GLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~ 441 (475)
-+...+++-+|-++..+...
T Consensus 1008 ~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1008 RLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHcccchhHHHHHHHHhc
Confidence 67777888888777766653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.52 Score=43.24 Aligned_cols=86 Identities=8% Similarity=-0.157 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
.+..|.-++.+.+++..|++..++..+.+ +.|....-.-..++...|+++.|+..|+++++.. |-|..+-+.++..
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD---PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 46667778899999999999999999976 3477777788899999999999999999999987 6666666666666
Q ss_pred HHhcCCHhHH
Q 011905 458 LKKSGDEELI 467 (475)
Q Consensus 458 ~~~~g~~~~a 467 (475)
..+..+.+..
T Consensus 335 ~~k~~~~~~k 344 (397)
T KOG0543|consen 335 KQKIREYEEK 344 (397)
T ss_pred HHHHHHHHHH
Confidence 6555554443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.54 E-value=3.3 Score=37.11 Aligned_cols=19 Identities=16% Similarity=0.093 Sum_probs=13.2
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011905 422 GLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~ 440 (475)
.+.+.+++++|.++|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3456788888888877544
|
It is also involved in sporulation []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.8 Score=33.81 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=35.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011905 281 FCGKGMMKEALGILDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
..+.|++++|.+.|+.+...- -+-....--.++.+|.+.+++++|...+++.++..+.....-|...+.+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 344556666666666555431 0112233445555666666666666666666554433222234444444433
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.41 E-value=2.2 Score=34.48 Aligned_cols=29 Identities=21% Similarity=0.379 Sum_probs=12.9
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCChHH
Q 011905 224 VMKRHGCAANLVAYSALLDGICRLGSMER 252 (475)
Q Consensus 224 ~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 252 (475)
.+.+.+++|+...+..+++.+.+.|++..
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33344444444444444444444444333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.39 E-value=3.4 Score=36.51 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=79.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
.....|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345567777777777777665433 2344556677777777777777777765432111111121122333334444444
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCC
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~g~ 463 (475)
...+-.++... +.|...--.+...+...|+.++|.+.+-.++++.. .-|...-..++..+.-.|.
T Consensus 222 ~~~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 44444444332 22556666667777777777777777666665432 3444555566666666663
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.31 E-value=2.3 Score=40.38 Aligned_cols=165 Identities=13% Similarity=0.043 Sum_probs=85.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV 318 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 318 (475)
.+|.-.-+..+...-.+.-.+..+. .||....-+++ +--......++.+++++..+.|- .. +.+
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei----~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~-------lg~ 236 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI----NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----AS-------LGK 236 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh----hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hh-------hch
Confidence 4444455556666666666666652 34432222111 22234456777777777665431 01 111
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 011905 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP-DGLACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 319 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~ 397 (475)
.......-..++....++..+-..+-..+..++-+.|+.++|++.+++|.+..... +......|+.++...+.+.++..
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 11111111122223333333333344556667778888888888888887642111 23355667788888888888888
Q ss_pred HHHHHHHcCCCCCCchhhHHHHH
Q 011905 398 LYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~li 420 (475)
++.+..+.. .|..-..+|+..+
T Consensus 317 lL~kYdDi~-lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDIS-LPKSATICYTAAL 338 (539)
T ss_pred HHHHhcccc-CCchHHHHHHHHH
Confidence 888765432 2222344555543
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.13 E-value=3.5 Score=35.67 Aligned_cols=58 Identities=14% Similarity=0.041 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.+.+.|.+.|.+..|..-+++|++. .|+ ...+-.+..+|...|-.++|...-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 3557788999999999999999986 333 245667778999999999998876666654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.71 Score=40.72 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34445555555555555555555555432 22444555555555555555555555554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.00 E-value=1.4 Score=33.57 Aligned_cols=91 Identities=13% Similarity=-0.003 Sum_probs=59.3
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH---HHHHHhcCC
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM---IKGFCNAGR 214 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~~~ 214 (475)
+.+..|+.+.|++.|.+....- +-....||.-..++.-.|+.++|++=+++..+..-......+.+. ...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4566778888888887766542 346677888888888888888888777776653212233322222 234556777
Q ss_pred HHHHHHHHHHHHHCC
Q 011905 215 LEDACGLFKVMKRHG 229 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g 229 (475)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766665
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.96 E-value=2.4 Score=33.14 Aligned_cols=75 Identities=16% Similarity=0.177 Sum_probs=38.4
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFC 317 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 317 (475)
...+.|++++|.+.|+.+..+-..-+-...+--.++.+|.+.+++++|...+++..+....-...-|...+.+++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 344556666666666666654211122233444456666666666666666666665432222233444444433
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.95 E-value=2.1 Score=32.59 Aligned_cols=54 Identities=24% Similarity=0.303 Sum_probs=29.1
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
++...|+++.|++.|.+.... ++.....||.-..++.-.|+.++|++=+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l---~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL---APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh---cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344555666666665555542 234455555555555555555555555555443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.91 E-value=2.8 Score=33.86 Aligned_cols=135 Identities=13% Similarity=0.150 Sum_probs=65.9
Q ss_pred HHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011905 184 DELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 184 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
.+++..+...+++|+...+..+++.+.+.|.+... ..+.+.++-+|.......+-.+. +....+.++--+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 34444555566667777777777777777765443 33344444445444333332222 2233344444444331
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 264 GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 264 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
=...+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 88 ------L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ------LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ------hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0113445556666667777776666554322 111123455555555555444444444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.90 E-value=5.2 Score=36.82 Aligned_cols=284 Identities=11% Similarity=0.022 Sum_probs=181.3
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHhcCCHHHHHHHHHhcccCCCCCCHhh--HHHHHHHHHhcCCh
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARLANEAMWVLRKMPEFDLRPDTII--YNNVIRLFCEKGDM 180 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~ 180 (475)
.-.|+-..+.++-..-.+. +.-|..-+..++. +..-.|+++.|.+-|+.|... |.... ...|.-..-+.|+.
T Consensus 95 agAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gar 170 (531)
T COG3898 95 AGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAR 170 (531)
T ss_pred hccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccH
Confidence 3457777777766554321 2334444545554 344579999999999999872 33222 23333344568999
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcCHHHH--HHHHHHHH---hcCChHHHH
Q 011905 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAANLVAY--SALLDGIC---RLGSMERAL 254 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~--~~ll~~~~---~~g~~~~a~ 254 (475)
+.|..+-+..-... +-=...+...+...+..|+|+.|+++.+.-.... +.++..-- ..|+.+-. -..+...|.
T Consensus 171 eaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 99998888776432 2235678889999999999999999999766543 33443221 22222211 124566777
Q ss_pred HHHHHHHhcCCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 255 ELLGEMEKEGGDCSPNVVT-YTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 333 (475)
..-.+..+. .||..- --.-..++.+.|+..++-.+++.+-+....|+.. .+..+.+.|+. +..-++...
T Consensus 250 ~~A~~a~KL----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~ 319 (531)
T COG3898 250 DDALEANKL----APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAK 319 (531)
T ss_pred HHHHHHhhc----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHH
Confidence 776666664 344322 2234567899999999999999999886555542 22334455553 333333322
Q ss_pred hC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHc
Q 011905 334 AG-GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL-CLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 334 ~~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~ 405 (475)
+. ..+| +......+..+-...|++..|..--+..... .|....|..|.+.- ...|+-.++++.+-+..+.
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 11 1223 4455667777888889999888777766644 78888888777654 4559999999988888774
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.79 E-value=1.9 Score=43.48 Aligned_cols=175 Identities=14% Similarity=0.103 Sum_probs=79.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHH----HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011905 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVS----MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
..-++.+++...++.|+.+.+.-. .|..+... ..+-+.+.|++++|...|-+-... ++|. .++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 344555555556666655544321 22222222 223334556666665555444322 1221 13344
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 323 (475)
|....+..+-...++.+.+.|. .+...-+.|+.+|.+.++.++..++.+... .|.. ..-....+..+.+.+-.+
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl---a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL---ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc---ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 4444555555555555555442 344445556666666666665555544333 2211 111233444455555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
+|..+-..... +...... .+-..+++++|++.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 55544433322 1111222 233446666666666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.9 Score=40.10 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCcCHHHHHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKR-----HGCAANLVAYSAL 240 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~~l 240 (475)
+..++..+...|+.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3444445555555555555555555433 34455555555555555555555555554443 3445544444333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.50 E-value=4.9 Score=40.73 Aligned_cols=244 Identities=11% Similarity=0.079 Sum_probs=124.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH----HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011905 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN----LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 98 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~----~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 173 (475)
..-+..+....-++.|..+... . ..+..+...+.. .+.+.|++++|...|-+-... +.| ..+|.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~--~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---Q--HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---c--CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 3444555555555555554332 2 223333333333 444567777777766655432 112 224555
Q ss_pred HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011905 174 FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
|........-..+++.+.+.|+ .+...-..|+.+|.+.++.++..++.+... .|.- ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 5666666666777777777664 344455667777777777777666655443 2211 11134456666666666666
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 333 (475)
.-+-..... +......+ +-..|++++|++.++.+.-...-+....|...+- ....++-..++-+..
T Consensus 483 ~~LA~k~~~-------he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll----~h~P~~t~~ili~~~ 548 (933)
T KOG2114|consen 483 ELLATKFKK-------HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKILL----EHDPEETMKILIELI 548 (933)
T ss_pred HHHHHHhcc-------CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHH----hhChHHHHHHHHHHH
Confidence 665544432 22223332 3456778888888776643222223333332221 234555555555544
Q ss_pred hCCCCCChhhHHHH-----HHHHHhcCCHHHHHHHHHHHHHC
Q 011905 334 AGGSVSSGGCYSSL-----VVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 334 ~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
.....++....... -....-.++++....+++.|.+.
T Consensus 549 t~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~ 590 (933)
T KOG2114|consen 549 TELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI 590 (933)
T ss_pred hhcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc
Confidence 43332222222211 12223446677777777767653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.49 E-value=3.3 Score=37.20 Aligned_cols=157 Identities=8% Similarity=-0.049 Sum_probs=114.8
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCChH
Q 011905 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH---GCAANLVAYSALLDGICRLGSME 251 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~g~~~ 251 (475)
-..|++.+|...++++.+. .+.|...++-.=.+|.-.|+.+.-...++++... +++-.......+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3578888888889998874 4778888888889999999999999999888754 23323344455666778899999
Q ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011905 252 RALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL---GCAPNRVTISTLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 252 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~ 328 (475)
+|++.-++..+-+ +.|.-+-.++...+-..|+..++.++..+-... +--.-.+.|-...-.+...+.++.|+++
T Consensus 193 dAEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 193 DAEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred hHHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 9999999998854 456666777888888899999999887654321 1111123344444456677899999999
Q ss_pred HHHHHhC
Q 011905 329 IDKVVAG 335 (475)
Q Consensus 329 ~~~~~~~ 335 (475)
|+.-+-.
T Consensus 270 yD~ei~k 276 (491)
T KOG2610|consen 270 YDREIWK 276 (491)
T ss_pred HHHHHHH
Confidence 9865443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.48 E-value=2.1 Score=38.73 Aligned_cols=166 Identities=13% Similarity=0.126 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHH
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRH-GCAA---NLVAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTY 274 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ 274 (475)
|..+.+++-+.-++.+++.+-+.-... |..| .-....++..+....+.++++++.|+...+-. .+......+|
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 334444444444455555444433321 1111 11223334455555556666666666554311 0011123455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-C
Q 011905 275 TSVIQIFCGKGMMKEALGILDRMEA----LGCAPNRVTI-----STLIKGFCVEGNLDEAYQLIDKVVA----GGSVS-S 340 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~-~ 340 (475)
-.+...|.+..|+++|.-+.....+ .++..-..-| ..+.-++...|.+..|.+.-++..+ .|-.+ .
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~ 245 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ 245 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence 5666666666666666655443321 1211111112 2223345555666666665555433 23222 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
......+.+.|-..|+.+.|+.-|+..
T Consensus 246 arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 246 ARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 233445556666667766666666554
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.26 E-value=1.7 Score=35.80 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
..+..+...|++.|+.++|.+.|.++.+...+...-...+-.+|....-.+++..+...+.+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455566666666666666666666655322111223334445555555666666665555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=6.3 Score=37.41 Aligned_cols=148 Identities=13% Similarity=-0.019 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHH-HcCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011905 287 MKEALGILDRME-ALGCAPN-RVTISTLIKGFCVE---------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 287 ~~~a~~~~~~m~-~~~~~p~-~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
.+.|+.+|.+.. ...+.|+ ...|..+..++... .+..+|.++-+...+.+.. |..+...+..++...+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 466777787776 2233444 33444444333321 2344566666666666643 5666666666667777
Q ss_pred CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH
Q 011905 356 RLKEAEKLFSKMLASGVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
+++.|...|++.... .||. .+|...-..+.-.|+.++|.+.+++..+....- ....+....++.|+. ...++|++
T Consensus 353 ~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~-~~~~~~~~~~~~~~~-~~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR-RKAVVIKECVDMYVP-NPLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh-hHHHHHHHHHHHHcC-CchhhhHH
Confidence 788888888887754 4553 333333344556788888888888876653110 122223333445543 45667777
Q ss_pred HHHHH
Q 011905 435 LARFM 439 (475)
Q Consensus 435 ~~~~m 439 (475)
++-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 76543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.04 E-value=4 Score=32.93 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=21.1
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
+.+..++|+.-|..+.+.|.+--|-. ..-.+.......|+...|...|.++-.
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvL-A~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVL-ARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHH-HHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 33444455555555544433322211 111122233444444445554444443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=93.02 E-value=6.1 Score=34.96 Aligned_cols=147 Identities=11% Similarity=0.055 Sum_probs=96.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-cCCccCHHhHHHHHHHHHhc-C-CHHHHHHHHHhccc-CCCCCCHhhHHHHHH
Q 011905 97 YNRACEMSRIKQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNLCEKA-R-LANEAMWVLRKMPE-FDLRPDTIIYNNVIR 172 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~-~-~~~~A~~~~~~m~~-~~~~~~~~~~~~ll~ 172 (475)
|..+++ +.....+|+.+++.... ..+--|..+...+++..... + ....-.++.+-+.. .+-.++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555442 33455667777774322 34566777777777766552 1 22222333333332 234677888888999
Q ss_pred HHHhcCChhHHHHHHHHhccC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCcCHHHHHHHHHHHHh
Q 011905 173 LFCEKGDMIAADELMKGMGLI-DLYPDIITYVSMIKGFCNAGRLEDACGLFKV-----MKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
.+++.+++.+-.++++..... +...|...|..+|+.....||..-...+.++ +++.|+..+...-..+-+.+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 999999999999999887664 5567888899999999999998877776653 4456677777666666555443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.99 E-value=5.3 Score=34.24 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASG---VKPDGLACSVMIRELCLGGQVLEGFCL 398 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~ 398 (475)
|...|-.+....++..|.+.++.--+.+ -.-+..+...|+.+| ..|+.+++..+
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 4455555555666667777666533211 122345566666654 34555554433
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.71 E-value=12 Score=37.48 Aligned_cols=181 Identities=18% Similarity=0.144 Sum_probs=105.0
Q ss_pred hhHHHHHHHHhccCCCCCChhhHHHHH--HH-HHhcCCHHHHHHHHHHHHH-------CCCCcCHHHHHHHHHHHHhcC-
Q 011905 180 MIAADELMKGMGLIDLYPDIITYVSMI--KG-FCNAGRLEDACGLFKVMKR-------HGCAANLVAYSALLDGICRLG- 248 (475)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~~~~~~~~li--~~-~~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~g- 248 (475)
...|.++++...+.|. ........++ .+ +....|.+.|...|+.+.+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 4567777777766552 1222121222 22 4466788888888888766 44 3335556666676643
Q ss_pred ----ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hc
Q 011905 249 ----SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-KGMMKEALGILDRMEALGCAPNRVTISTLIKGFC----VE 319 (475)
Q Consensus 249 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~ 319 (475)
+.+.|.+++......| .|+....-..+..... ..+...|.++|...-+.|.. ..+-.+..+|. -.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 5677899988888855 3554443332222222 24678899999888888743 22222222222 23
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011905 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 320 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 372 (475)
.+.+.|..++....+.|...... -...+..+.. ++++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g~~~A~~-~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNPSAAY-LLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHccChhhHH-HHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 46788888888888888332222 1222223333 677777777766666553
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.45 Score=28.55 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011905 237 YSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
+..+...|.+.|++++|.++|+++.+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555553
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.70 E-value=9 Score=36.10 Aligned_cols=390 Identities=11% Similarity=0.014 Sum_probs=191.8
Q ss_pred CCChHHHHHHHHHhhhCCCCC---CCHHHHH-HHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH--HHHhcCC
Q 011905 71 PSQSQMGIRFFIWAALQSSYR---HSSFMYN-RACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN--LCEKARL 144 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~ 144 (475)
+++.+.+-++|........-. ...+.+. .++.. --..+.+.+...+....+.. | ...|-.+.. .+.+.+.
T Consensus 19 q~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnA-ffl~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 19 QKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNA-FFLNNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHH-HHHhhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHHhhh
Confidence 455566666666654433211 1222222 22332 23466777777776665542 2 334444444 3456788
Q ss_pred HHHHHHHHHhcccC--CCCC------------CHhhHHHHHHHHHhcCChhHHHHHHHHhccCC----CCCChhhHHHHH
Q 011905 145 ANEAMWVLRKMPEF--DLRP------------DTIIYNNVIRLFCEKGDMIAADELMKGMGLID----LYPDIITYVSMI 206 (475)
Q Consensus 145 ~~~A~~~~~~m~~~--~~~~------------~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~~~~~~~~~~li 206 (475)
+++|.+.+..-.+. +.++ |...=+..+..+...|++.++..+++++...= ..-+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 89988887765443 2221 22233567788999999999999998886533 336888898866
Q ss_pred HHHHhcCC---------------HHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHhc--CChHHHHHHHHHHHhc
Q 011905 207 KGFCNAGR---------------LEDACGLFKVMKRH------GCAANLVAYSALLDGICRL--GSMERALELLGEMEKE 263 (475)
Q Consensus 207 ~~~~~~~~---------------~~~a~~~~~~m~~~------g~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~ 263 (475)
-.+++.-- ++.+.-..++|... .+.|.......++....-. .+..--.+++......
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 65554311 12222222222211 1233333333343333221 1222223333333221
Q ss_pred CCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011905 264 GGDCSPN-VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP----NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 264 ~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 338 (475)
-+.|+ ..+...++..+.+ +.+++..+-+.+....+.+ =..+|..++....+.++...|...+.-+...++.
T Consensus 255 --yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~ 330 (549)
T PF07079_consen 255 --YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPR 330 (549)
T ss_pred --ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCc
Confidence 12233 2222333333333 4444444444433221111 2346677777777777777777766655433211
Q ss_pred CC-------------------hhhHH------------------------HH---HHHHHhcCC-HHHHHHHHHHHHHCC
Q 011905 339 SS-------------------GGCYS------------------------SL---VVELVRTKR-LKEAEKLFSKMLASG 371 (475)
Q Consensus 339 ~~-------------------~~~~~------------------------~l---i~~~~~~g~-~~~A~~~~~~m~~~~ 371 (475)
.. ...++ .| ..-+-+.|. -++|+++++...+-
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f- 409 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF- 409 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh-
Confidence 10 00010 11 112223343 56677777666542
Q ss_pred CCC-CHHH----HHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCC--chhhHHHHHHH--HHhcCCHHHHHHHHHHH
Q 011905 372 VKP-DGLA----CSVMIRELCL---GGQVLEGFCLYEDIEKIGFLSSV--DSDIHSVLLLG--LCRKNHSVEAAKLARFM 439 (475)
Q Consensus 372 ~~p-~~~~----~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~--~~~~g~~~~A~~~~~~m 439 (475)
.| |... +..+=.+|.+ ...+.+-..+-+-+.+.|+.|.. +...-|.+.++ +...|++.++.-.-.-+
T Consensus 410 -t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 -TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred -ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22 2211 1111122222 23344444444445555654421 33344555444 34567777776554444
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 440 LKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.+ +.|++.++..++-++....++++|..+++
T Consensus 489 ~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 489 TK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 43 35788888888888888888888876654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=7.4 Score=34.90 Aligned_cols=136 Identities=13% Similarity=0.052 Sum_probs=64.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011905 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG-MMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
+..+-...+.++.+.|+ +++...+-.+... ++..+-...+.++.+.+ +.+.+...+..+.. .++...-..
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d-----~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~ 211 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD-----PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIE 211 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC-----CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHH
Confidence 44444455555555554 3444555444442 33333333444444432 13344444444442 234444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
.+.++.+.++. .+...+-...+.+. .....+.++...|.. +|...+..+.+. .||...-...+.+|
T Consensus 212 A~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 212 AIIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 55566666553 34444444443322 123455566666664 466666666543 34555544444443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.48 E-value=3.2 Score=34.23 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPD--IITYVSMIKGFCNAGRLEDACGLFKVM 225 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m 225 (475)
+..+...|++.|+.+.|.+.|.++......+. ...+-.+|+.....+++..+...+.+.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44444555555555555555555444322211 223344445555555555555444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=92.44 E-value=7.8 Score=34.76 Aligned_cols=18 Identities=6% Similarity=-0.108 Sum_probs=11.0
Q ss_pred HHHHHhcCCHhHHhhccc
Q 011905 455 VEHLKKSGDEELITNLPK 472 (475)
Q Consensus 455 ~~~~~~~g~~~~a~~l~~ 472 (475)
+..+.+.++++.|.+.++
T Consensus 253 ~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHhhcCHHHHHHHHH
Confidence 344566677777766554
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.34 Score=27.60 Aligned_cols=26 Identities=12% Similarity=-0.130 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
+|..|...|.+.|++++|++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999999998855
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.31 E-value=6.4 Score=33.43 Aligned_cols=167 Identities=19% Similarity=0.130 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
..+......+...+++..+...+...... ........+......+...+.+..+.+.+........ .+........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 136 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP---DPDLAEALLA 136 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC---CcchHHHHHH
Confidence 34444444445555555555554444331 1122333444444444555555555555555544210 0111111111
Q ss_pred H-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011905 279 Q-IFCGKGMMKEALGILDRMEALGC--APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 279 ~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
. .+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...+
T Consensus 137 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 137 LGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 2 44455555555555555433110 01122222222223344455555555554444322212233444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 011905 356 RLKEAEKLFSKMLA 369 (475)
Q Consensus 356 ~~~~A~~~~~~m~~ 369 (475)
+.+.|...+.....
T Consensus 217 ~~~~a~~~~~~~~~ 230 (291)
T COG0457 217 KYEEALEYYEKALE 230 (291)
T ss_pred cHHHHHHHHHHHHh
Confidence 55555555554443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.28 E-value=8.8 Score=35.01 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q 011905 308 TISTLIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~ 330 (475)
.|..|-..|.+..|+++|.-+..
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~ 186 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPC 186 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhH
Confidence 34444445555555555544433
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.16 E-value=9.9 Score=35.35 Aligned_cols=156 Identities=10% Similarity=-0.017 Sum_probs=96.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHH----------
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD--GICRLGSMERALELLGEMEKEGGDCSPNVVTY---------- 274 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 274 (475)
.++.-.|+.++|.++--..++.. ....+..+++ ++.-.++.+.|...|++.+..+ |+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld----pdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD----PDHQKSKSASMMPKKL 249 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC----hhhhhHHhHhhhHHHH
Confidence 34556788888887777666653 1223333333 3344677888888888887743 433221
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011905 275 ---TSVIQIFCGKGMMKEALGILDRMEAL---GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 275 ---~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
..=..-..+.|++..|.+.|.+.... +..|+...|.....+..+.|+.++|+.--++..+.+... ...|..-.
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-ikall~ra 328 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY-IKALLRRA 328 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-HHHHHHHH
Confidence 11122345778888888888887653 345566667777777778888888888877776643211 22233334
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 011905 349 VELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
.++...+++++|.+-|+...+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667888888888777654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.87 E-value=7.2 Score=33.09 Aligned_cols=227 Identities=21% Similarity=0.120 Sum_probs=158.2
Q ss_pred cCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011905 212 AGRLEDACGLFKVMKRHGCA-ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
.+....+...+......... .....+......+...+.+..+...+...... .........+......+...++...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALGKYEEA 114 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHhhHHHH
Confidence 34555666666666554322 13577788888899999999999999888751 01235566777777888888889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 291 LGILDRMEALGCAPNRVTISTLIK-GFCVEGNLDEAYQLIDKVVAGGS--VSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 291 ~~~~~~m~~~~~~p~~~~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
.+.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+...
T Consensus 115 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 115 LELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 99999888754333 122222333 78899999999999999866332 122334444445567788999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+.........+..+...+...++.+.+...+......... ....+..+...+...+..+++...+.+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD---NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc---cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 86531113567777778888888999999999998886421 23445555555557778999999988888765
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.83 E-value=8.3 Score=34.14 Aligned_cols=148 Identities=10% Similarity=0.053 Sum_probs=104.5
Q ss_pred HHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHHh-cCCccCHHhHHHHHHH
Q 011905 62 VIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI--KQNPSIIIDVVEAYKE-EGCVVSVKMMKVIFNL 138 (475)
Q Consensus 62 ~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~ 138 (475)
+..+.++ -.....|++.|...--......++.....+++.... ........++++.+.. .|..++..+...++..
T Consensus 134 Y~~LVk~--N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~ 211 (292)
T PF13929_consen 134 YWDLVKR--NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEI 211 (292)
T ss_pred HHHHHHh--hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHH
Confidence 4444433 333455677776532223356677777777776544 2345555566666553 3457888899999999
Q ss_pred HHhcCCHHHHHHHHHhcccC-CCCCCHhhHHHHHHHHHhcCChhHHHHHHHH-----hccCCCCCChhhHHHHHHHHHh
Q 011905 139 CEKARLANEAMWVLRKMPEF-DLRPDTIIYNNVIRLFCEKGDMIAADELMKG-----MGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-----m~~~~~~~~~~~~~~li~~~~~ 211 (475)
+++.+++.+-.++++..... +...|...|...|....+.|+..-..++.++ +++.++..+...-..+-+.+.+
T Consensus 212 L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~ 290 (292)
T PF13929_consen 212 LAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK 290 (292)
T ss_pred HHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence 99999999999999987765 6677899999999999999999888888775 4566777777766666555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.79 E-value=3 Score=37.02 Aligned_cols=101 Identities=10% Similarity=0.128 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011905 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC 379 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 379 (475)
.....+...++..-.....++.+...+-.+.... ..++. +-...++.+. .-++++++.++..=+..|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhH
Confidence 3334444444444444555555555555544321 11111 1112222222 22455666666655566666666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+.+|+.+.+.+++.+|.++.-.|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 66666666666666666655555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.76 E-value=11 Score=35.03 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=96.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CcCHHHHHHHHHHHH
Q 011905 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC----AANLVAYSALLDGIC 245 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~ 245 (475)
...+.-+.|+++...+........ .++...+..+... +.++.+++...++.....-. ......|......+.
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~ 79 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLV 79 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 355677888888866666655432 2344455544433 77888888888777654310 112334455555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-----cCCHHHHHHHH---HHHHH--cCCCCCHHHHHHHHHH
Q 011905 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-----KGMMKEALGIL---DRMEA--LGCAPNRVTISTLIKG 315 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-----~g~~~~a~~~~---~~m~~--~~~~p~~~~~~~li~~ 315 (475)
+...+.+..++.+-..... .+......++..... ..+++.-..++ ..+.. ........++..++..
T Consensus 80 ~lq~L~Elee~~~~~~~~~----~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 80 KLQQLVELEEIIELKSNLS----QNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKL 155 (352)
T ss_pred HHhHHHHHHHHHHHHHhhc----ccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 5555555555544443211 112222233322211 11222111111 11111 0112234456666666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
+.+.|.++.|...+..+...+... +......-...+-..|+..+|+..++...+
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777766543211 223333445555666777777777666665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.65 E-value=10 Score=34.32 Aligned_cols=130 Identities=15% Similarity=0.130 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCC-
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCV--E----GNLDEAYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKR- 356 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~--~----~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~- 356 (475)
+++.+.+++.|.+.|..-+..+|-+..-.... . ....++..+|+.|.+..+.. +...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34556677888888888777666553333332 2 23557888888888765433 22334444432 3333
Q ss_pred ---HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 357 ---LKEAEKLFSKMLASGVKPDG--LACSVMIRELCLGGQ--VLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 357 ---~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
.+.++.+|+.+.+.|+..+. .....++..+-.... +.++.++++.+.+.|++. ....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ki--k~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKI--KYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcc--ccccccHHH
Confidence 35567788888877776543 233333332222222 457788888888888765 444455553
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.43 E-value=13 Score=35.10 Aligned_cols=143 Identities=12% Similarity=-0.022 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHH
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLAC-SVMIR 384 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~ 384 (475)
..|...+....+..-++.|..+|-+..+.+ ..+++..+++++..++. |+...|.++|+--... -||...| ...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 456677788788888999999999999888 56678889999987754 6778899999875544 4554443 34556
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011905 385 ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 385 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
-+...++-+.|..+|+...++--. ..-...|..+|.--..-|+...+..+-+.|... .|...+.....
T Consensus 475 fLi~inde~naraLFetsv~r~~~-~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~ 542 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEK-TQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT 542 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHH-hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence 677889999999999955543110 112467999998888899999888887777654 24444444333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.36 Score=27.08 Aligned_cols=22 Identities=14% Similarity=-0.004 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHH
Q 011905 412 DSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~ 433 (475)
+...|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5555666666666666665554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.81 E-value=2.9 Score=29.94 Aligned_cols=63 Identities=11% Similarity=0.117 Sum_probs=48.9
Q ss_pred ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011905 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 172 (475)
+.-++.+-++.+......|++....+.+++|.+.+++..|+.+|+..+... ..+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 455667778888888889999999999999999999999999999877431 224556766664
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.78 E-value=0.68 Score=26.32 Aligned_cols=24 Identities=8% Similarity=0.076 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
|..|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555566666666555553
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.99 E-value=4.1 Score=36.23 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
-++++++.++..=.+.|+-||.++++.+|+.+.+.+++.+|.++.-.|+.
T Consensus 114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34555555555555566666666666666666666666666555555544
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.95 E-value=4.7 Score=33.58 Aligned_cols=42 Identities=17% Similarity=0.003 Sum_probs=18.7
Q ss_pred cCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCChHHH
Q 011905 212 AGRLEDACGLFKVMKRH---GCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
..|.+++.+++....+. +-.+|+..+..|+..|.+.|+++.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444555444444331 1234444444455555444444444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.85 E-value=0.44 Score=26.75 Aligned_cols=32 Identities=9% Similarity=0.002 Sum_probs=21.8
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHh
Q 011905 436 ARFMLKKRIWLQGPYVDKIVEHLKKSGDEELIT 468 (475)
Q Consensus 436 ~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (475)
|++.++.. |-++..|..+...|...|+.++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555 666777777777777777777765
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.25 E-value=1.7 Score=31.41 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=43.9
Q ss_pred ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011905 109 NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 173 (475)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|+.+|+.++..- .+....|..+++-
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQE 88 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 344566677778888889999999999999999999999999999887542 2233377766653
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.89 E-value=20 Score=33.35 Aligned_cols=67 Identities=18% Similarity=0.171 Sum_probs=52.5
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011905 269 PNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 269 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 335 (475)
....+|..+...+.+.|+++.|...+..+...+... ++.....-+...-..|+..+|...++.....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456678889999999999999999999988754221 3344555567778889999999999988874
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=88.83 E-value=29 Score=35.25 Aligned_cols=45 Identities=2% Similarity=-0.108 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhc
Q 011905 97 YNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKA 142 (475)
Q Consensus 97 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 142 (475)
...++-.+-|.|+.+.|.++...... ........|...+..|...
T Consensus 114 ~Wa~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 114 IWALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTT
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhC
Confidence 34566677888888888888844433 2344445566666666553
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.48 E-value=5.6 Score=28.54 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++.++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4444445555455556666666666666666666666666665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.54 E-value=13 Score=29.76 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=26.1
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHH-HHHHHHhcCCHHHHHHHHHhcccC
Q 011905 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKV-IFNLCEKARLANEAMWVLRKMPEF 158 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~ 158 (475)
..++.+.+..+++.++.. .|....... -...+.+.|++.+|..+|+.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 345566666666665553 232222222 122455666666666666666543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=28 Score=33.24 Aligned_cols=161 Identities=17% Similarity=0.075 Sum_probs=82.7
Q ss_pred hhH--HHHHHHHHhcC-----CHHHHHHHHHHHHH-CCCCcC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 011905 200 ITY--VSMIKGFCNAG-----RLEDACGLFKVMKR-HGCAAN-LVAYSALLDGICR---------LGSMERALELLGEME 261 (475)
Q Consensus 200 ~~~--~~li~~~~~~~-----~~~~a~~~~~~m~~-~g~~~~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~ 261 (475)
..| ..++++..... ..+.|+.+|.+... ..+.|+ ...|..+..++.. ..+..+|.+..+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 445 55555554422 24567777777762 222333 3334333333221 223455666666666
Q ss_pred hcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-
Q 011905 262 KEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS- 339 (475)
Q Consensus 262 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~- 339 (475)
+.+ +.|......+..+....++.+.|..+|++....+ || ..+|....-.+.-.|+.++|.+.+++..+..+.-
T Consensus 332 eld---~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 332 DIT---TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred hcC---CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhh
Confidence 643 3566666666666666666777777777766643 33 3333333344455677777777777755543211
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (475)
-.......++.|+. ...+.|+++|-+
T Consensus 407 ~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 407 KAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 11112222223433 345666666644
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.20 E-value=11 Score=36.82 Aligned_cols=151 Identities=16% Similarity=0.136 Sum_probs=90.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 184 (475)
.-+++++.|..++.... ....+.+.+.+-+.|..++|+++- +|.. .-.....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d---~rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPD---QRFELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChh---hhhhhhhhcCcHHHHH
Confidence 34567777666554321 344555666677777777766542 2221 1122344567777777
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 011905 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264 (475)
Q Consensus 185 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (475)
++..+.. +..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 7765542 456677777777778887777777765432 4456666666777666666666666654
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRM 297 (475)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 297 (475)
. . |...-+|...|+++++.+++.+-
T Consensus 723 ~---~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 723 K---N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred c---c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 2 2 22334556677777777776543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.17 E-value=1.6 Score=25.45 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+++.+...|...|++++|.+++++.+..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788888888889999999988887753
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.16 E-value=1.8 Score=23.93 Aligned_cols=30 Identities=13% Similarity=-0.081 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+|..+..+|...|++++|++.|++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467888889999999999999999988764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.84 E-value=13 Score=36.47 Aligned_cols=132 Identities=17% Similarity=0.098 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKG 315 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 315 (475)
.-+.+...+.+.|-.++|+++- +|... -.....+.|+.+.|.++..+.. +..-|..|-++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-----------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-----------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDA 675 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-----------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHH
Confidence 4455666666777777666542 12111 1233456677777777765543 45667888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 395 (475)
..+.+++..|.+.|..... |..|+-.+...|+.+....+-....+.|. . |...-+|...|+++++
T Consensus 676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEEC 740 (794)
T ss_pred HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHH
Confidence 8888888888887766544 56677777777777666666666655553 2 2233345667888887
Q ss_pred HHHHHHH
Q 011905 396 FCLYEDI 402 (475)
Q Consensus 396 ~~~~~~~ 402 (475)
.+++.+-
T Consensus 741 ~~lLi~t 747 (794)
T KOG0276|consen 741 LELLIST 747 (794)
T ss_pred HHHHHhc
Confidence 7665443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.71 E-value=10 Score=27.60 Aligned_cols=47 Identities=11% Similarity=0.122 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555555555666777777777777777777777777777777665
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.68 E-value=2.2 Score=23.45 Aligned_cols=29 Identities=14% Similarity=-0.067 Sum_probs=19.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|..+...+...|++++|++.+++.++..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45666777777777777777777776653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=84.87 E-value=17 Score=28.63 Aligned_cols=101 Identities=14% Similarity=0.081 Sum_probs=61.9
Q ss_pred hhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011905 342 GCYSSLVVEL---VRTKRLKEAEKLFSKMLASGVKPDG---LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 342 ~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
.+.+.|++.. ...++++++..++..|.-. +|+. .++...+ +...|++++|.++|+++.+.+.. ..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~-----~p 78 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGA-----PP 78 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCC-----ch
Confidence 3445555443 3578999999999999854 6654 3444444 57889999999999999987532 22
Q ss_pred HHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCChhhH
Q 011905 416 HSVLLLGLCRKNHSVEAA-KLARFMLKKRIWLQGPYV 451 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~ 451 (475)
|..-+.++|-.-.-|-.. ..-++++..+-+++....
T Consensus 79 ~~kAL~A~CL~al~Dp~Wr~~A~~~le~~~~~~a~~L 115 (153)
T TIGR02561 79 YGKALLALCLNAKGDAEWHVHADEVLARDADADAVAL 115 (153)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCHhHHHH
Confidence 554555554332222233 344566666645554433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.80 E-value=2.6 Score=24.44 Aligned_cols=28 Identities=36% Similarity=0.372 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455555555566666666655555543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.69 E-value=12 Score=31.16 Aligned_cols=82 Identities=15% Similarity=0.040 Sum_probs=53.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC-CCcHHHHHHHHHHHHhcCC
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDC-SPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~ 286 (475)
-+.+.|| +.|.+.|-.+...+.--++.....|...|. ..+.+++..++....+....- .+|+..+..|...+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3445555 667777777776665545555544444444 567778888777766543222 5777788888888888888
Q ss_pred HHHHH
Q 011905 287 MKEAL 291 (475)
Q Consensus 287 ~~~a~ 291 (475)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 87775
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.68 E-value=9.3 Score=32.23 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHH
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDGLACSVMIRE 385 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~ 385 (475)
|.+.-++.+.+.+.+.+++...++-++.... |...-..+++.||-.|++++|..-++-.-.. ...+....|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455566777888899999888887776543 5566777888999999999998766655432 223445667777654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.55 E-value=2.8 Score=23.10 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=13.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
|..+..+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44455555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.44 E-value=9.6 Score=32.16 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKV 224 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 224 (475)
+..++.+.+.+..++++...++-.+.. +.|..+-..++..++-.|++++|..-++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l 60 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNL 60 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHH
Confidence 333444445555555555544443332 33334444455555555555555444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.21 E-value=21 Score=29.03 Aligned_cols=140 Identities=9% Similarity=-0.017 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHh-HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHh-hHHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKM-MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTI-IYNN 169 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~ 169 (475)
.+...|...+. +...+..++|+.-|..+.+.|..--+.. .--......+.|+...|+..|+++-.....|-.. -...
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 56677766664 4667888999999999998875432221 1123346778899999999999987653333332 1111
Q ss_pred H--HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011905 170 V--IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 170 l--l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 232 (475)
| .-.+...|.++....-.+.+-..+-+.-...-..|.-+-.+.|++.+|.+.|..+......|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 1 22466789999999999988766644444555677778889999999999999987754333
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=84.00 E-value=2.4 Score=29.09 Aligned_cols=48 Identities=4% Similarity=-0.125 Sum_probs=29.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011905 388 LGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 388 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
...+.++|+..|+...+.-..++.--.++..++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777776665444333344556666677777777776655
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.88 E-value=3.2 Score=22.82 Aligned_cols=30 Identities=13% Similarity=-0.158 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+|..+...|...|++++|.+.|++.++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 357778888888999999999988887653
|
... |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=83.65 E-value=14 Score=32.44 Aligned_cols=87 Identities=11% Similarity=0.033 Sum_probs=40.4
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH-----
Q 011905 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC----- 210 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----- 210 (475)
|.+++..+++.+++...-+--+.--+........-|-.|.+.|.+..+.++-.......-.-+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 556666666666655443332211112223333444455666666666665555544211222233444444332
Q ss_pred hcCCHHHHHHHH
Q 011905 211 NAGRLEDACGLF 222 (475)
Q Consensus 211 ~~~~~~~a~~~~ 222 (475)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 345555555544
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.49 E-value=32 Score=30.59 Aligned_cols=101 Identities=14% Similarity=0.119 Sum_probs=65.3
Q ss_pred CCCCCHhhHHHHHHHHHhc-CChhHHHHHHHHhccCCCCCC-----------------hhhHHHHHHHHHhcCCHHHHHH
Q 011905 159 DLRPDTIIYNNVIRLFCEK-GDMIAADELMKGMGLIDLYPD-----------------IITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 159 ~~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~~~-----------------~~~~~~li~~~~~~~~~~~a~~ 220 (475)
+++-|..-|-..++..-.. -.++++.++....+.. .-|+ ..+++...+.|..+|.+.+|.+
T Consensus 222 ~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgd-yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~ 300 (361)
T COG3947 222 LPKYDVQEYESLARQIEAINLTIDELKELVGQYKGD-YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQ 300 (361)
T ss_pred CccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCC-cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3555666666666554432 2355666665555321 1111 1123445567888999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011905 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
+.+...... +.+...+..++..+...|+--.|.+-++.+.
T Consensus 301 l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 301 LHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 998888764 4577888889999999998777776666554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.73 E-value=3.7 Score=22.48 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
+..+...+...|++++|++.|++..
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3444445555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.47 E-value=9 Score=34.62 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=33.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
+-|.+.|++++|.+.|..-+..... +.+++..-..+|.+..++..|..-....+
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4567777777777777666554321 45556666667777777766665555544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=82.11 E-value=0.8 Score=36.22 Aligned_cols=84 Identities=6% Similarity=-0.051 Sum_probs=50.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++ .. +..-...++..|.+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~---~~------~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK---TS------NNYDLDKALRLCEKH 83 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT---SS------SSS-CTHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc---cc------cccCHHHHHHHHHhc
Confidence 556666667777777777777765545556677777777777766666666655 11 111123455566666
Q ss_pred CCHHHHHHHHHHH
Q 011905 427 NHSVEAAKLARFM 439 (475)
Q Consensus 427 g~~~~A~~~~~~m 439 (475)
|.+++|.-++.++
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 7777777666554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.99 E-value=23 Score=27.95 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=29.8
Q ss_pred cCChhHHHHHHHHHHhcCC-ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccC
Q 011905 107 KQNPSIIIDVVEAYKEEGC-VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF 158 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 158 (475)
..+++.+..+++.|+-... .+...+|. .-.+.+.|++.+|..+|+...+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 5667777777777665421 12222222 23556777777777777777764
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.93 E-value=0.86 Score=36.04 Aligned_cols=82 Identities=16% Similarity=0.153 Sum_probs=39.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh
Q 011905 102 EMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI 181 (475)
Q Consensus 102 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 181 (475)
..+...+.+......++.+...+...+....+.++..|++.++.++...+++.... .-...+++.|.+.|.++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTSHH
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcchHH
Confidence 33444455555555555555544444555566666666666554555555542211 11233444444445555
Q ss_pred HHHHHHHHh
Q 011905 182 AADELMKGM 190 (475)
Q Consensus 182 ~a~~~~~~m 190 (475)
.|.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 544444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=80.87 E-value=54 Score=31.41 Aligned_cols=130 Identities=6% Similarity=-0.079 Sum_probs=85.3
Q ss_pred HHHHHHHhhhCCCChHHHH-HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHH
Q 011905 60 TCVIEVLHRCFPSQSQMGI-RFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNL 138 (475)
Q Consensus 60 ~~~~~~l~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 138 (475)
+.-.++-+.+..++...|- ++|.-...+++.+ ........+....|+++.+...+....+. +.....+...+++.
T Consensus 291 ~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p---~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~ 366 (831)
T PRK15180 291 EITLSITKQLADGDIIAASQQLFAALRNQQQDP---VLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRS 366 (831)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCc---hhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHh
Confidence 3444555666566665554 4555555555543 33333344566678899998888775442 34456778888998
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC
Q 011905 139 CEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID 194 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 194 (475)
....|++++|...-+.|....++ +.+......-..-..|-++++.-.|+++...+
T Consensus 367 ~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 367 LHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred hhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88999999999999998876664 45544444444445677888888888876544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.66 E-value=66 Score=32.29 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=9.0
Q ss_pred hcCCHHHHHHHHHhccc
Q 011905 141 KARLANEAMWVLRKMPE 157 (475)
Q Consensus 141 ~~~~~~~A~~~~~~m~~ 157 (475)
...+.+.|+..|+.+.+
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 44455555555555544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=80.33 E-value=29 Score=27.90 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=5.1
Q ss_pred cCCHHHHHHHHHH
Q 011905 284 KGMMKEALGILDR 296 (475)
Q Consensus 284 ~g~~~~a~~~~~~ 296 (475)
.|++.+|..+|++
T Consensus 57 r~~w~dA~rlLr~ 69 (160)
T PF09613_consen 57 RGDWDDALRLLRE 69 (160)
T ss_pred hCCHHHHHHHHHH
Confidence 3333333333333
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=80.23 E-value=59 Score=31.50 Aligned_cols=179 Identities=10% Similarity=0.052 Sum_probs=113.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011905 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 172 (475)
+....-+++.+++..-++..+..+..+|..-| -+--.|..++..|...+ .++-..+|+++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~-n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENG-NEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcC-chhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445567778887778888888888887765 34566777888888874 57788888888876652 4444444555
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHh
Q 011905 173 LFCEKGDMIAADELMKGMGLIDLYP-----DIITYVSMIKGFCNAGRLEDACGLFKVMKR-HGCAANLVAYSALLDGICR 246 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~ 246 (475)
.|-+ ++.+.+..+|.+....-++. -...|..+.... ..+.+..+.+...+.. .|...-...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 77788888887776543221 112344444321 3456666666666654 3444445566666677777
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011905 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
..++++|++++..+.+.+ ..|..+-..++..+
T Consensus 218 ~eN~~eai~Ilk~il~~d---~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD---EKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc---chhhhHHHHHHHHH
Confidence 888888888888887743 34555555555544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.23 E-value=74 Score=32.58 Aligned_cols=151 Identities=13% Similarity=0.027 Sum_probs=88.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCcc---CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc
Q 011905 101 CEMSRIKQNPSIIIDVVEAYKEEGCVV---SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 177 (475)
++.+...+.+++|+++.+.... ..| -.......|..+.-.|++++|-...-.|.. -+..-|..-+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccc
Confidence 4566677788888887766433 233 345667778888888999999888888865 3566666666666666
Q ss_pred CChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----------------HCCCCcCHHHHHHH
Q 011905 178 GDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK-----------------RHGCAANLVAYSAL 240 (475)
Q Consensus 178 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----------------~~g~~~~~~~~~~l 240 (475)
++......+ +....-..+...|..++..+.. .+...-.++..+.. +..-+ +...-..|
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~L 511 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEVL 511 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHHH
Confidence 655443332 2221112345566666666655 22222222211110 00001 22233457
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 011905 241 LDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+..|...+++..|.+++-...+
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHccChHHHHHHHHhccC
Confidence 8888888899998888776654
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.20 E-value=4 Score=24.50 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=11.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
|..+|...|+.+.|+++++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.5 bits (207), Expect = 2e-17
Identities = 30/221 (13%), Positives = 66/221 (29%), Gaps = 10/221 (4%)
Query: 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL---MKGMGLIDLYPDIITYVSMIK 207
+ + L + + A L G + Y +++
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173
Query: 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALE-LLGEMEKEGGD 266
G+ G ++ + ++K G +L++Y+A L + R +E L +M +EG
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG-- 231
Query: 267 CSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326
+ ++ ++K + P V S L++ +
Sbjct: 232 LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYP 291
Query: 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367
+L + + L +EL + EK
Sbjct: 292 KLHLPLKTLQCL----FEKQLHMELASRVCVVSVEKPTLPS 328
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 6e-11
Identities = 23/204 (11%), Positives = 60/204 (29%), Gaps = 8/204 (3%)
Query: 92 HSSFMYNRACEMSRIKQNPSIIID--VVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149
S + A + S+ ++ + + + + F C A
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 150 WVL---RKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206
+L + +YN V+ + +G ++ + L PD+++Y + +
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
Query: 207 KGFCNAGR-LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265
+ + + M + G + + LL R ++ ++
Sbjct: 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPP- 266
Query: 266 DCSPNVVTYTSVIQIFCGKGMMKE 289
P V + +++ K
Sbjct: 267 -QLPPPVNTSKLLRDVYAKDGRVS 289
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 7e-09
Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 3/130 (2%)
Query: 268 SPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327
SP ++Q GK + + + + + K + L A+
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 328 LIDKV---VAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIR 384
L+ + + Y+++++ R KE + + +G+ PD L+ + ++
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 385 ELCLGGQVLE 394
+ Q
Sbjct: 209 CMGRQDQDAG 218
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 4e-11
Identities = 82/539 (15%), Positives = 154/539 (28%), Gaps = 184/539 (34%)
Query: 30 SPAERFYTHLQKNPNNIEKTLATVKAKLDSTCVIEVLHRCFPSQSQMGIRFFIWAALQSS 89
S E H+ + + + TL L S+ + ++ F+ L+ +
Sbjct: 47 SKEE--IDHIIMSKDAVSGTL--------------RLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 90 YRHSSFMYNRACEMSRIK---QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLAN 146
Y F+ MS IK + PS++ + ++ + K +N+ RL
Sbjct: 91 Y---KFL------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNVS---RL-- 134
Query: 147 EAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMG-------------LI 193
+ LR+ +LRP + +I G + G G +
Sbjct: 135 QPYLKLRQALL-ELRPAKNV---LID-----G--------VLGSGKTWVALDVCLSYKVQ 177
Query: 194 DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253
I ++++ LE L + + + + + + L R+ S++
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAE 233
Query: 254 L-ELLGEMEKEGGDC--------SPNVV-------------------------TYTSVIQ 279
L LL K +C + T T +
Sbjct: 234 LRRLL--KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 280 IFCGKGMMK-EALGILDRM----------EALGCAPNRVTISTLIKGFCVEG-------- 320
+ E +L + E L P +S +I +G
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP--RRLS-IIAESIRDGLATWDNWK 348
Query: 321 --NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378
N D+ +I+ + L R K+F L+ V P
Sbjct: 349 HVNCDKLTTIIES-----------SLNVLEPAEYR--------KMF-DRLS--VFPP--- 383
Query: 379 CSVMIRELCLGGQVLE---GFCLYEDIEKI--GF--LSSVDSD-------IHSVLLLGLC 424
S I +L + D+ + S V+ I S+ L
Sbjct: 384 -SAHIPT-----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 425 RKNHSVEAAK--LARFMLKKRI--W-LQGPYVDK-----IVEHLKKSGDEELITNLPKI 473
+ + + + + + K L PY+D+ I HLK E +T +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.61 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.45 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.43 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.42 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.4 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.38 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.38 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.28 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.25 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.2 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.11 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.06 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.05 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.03 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.97 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.94 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.92 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.92 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.91 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.91 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.91 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.89 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.88 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.87 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.87 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.84 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.82 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.82 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.74 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.72 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.71 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.68 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.68 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.65 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.64 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.63 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.6 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.57 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.57 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.56 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.55 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.55 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.51 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.51 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.51 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.51 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.5 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.48 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.48 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.47 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.46 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.44 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.43 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.4 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.4 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.4 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.39 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.35 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.35 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.32 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.3 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.29 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.29 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.28 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.27 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.26 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.26 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.23 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.23 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.21 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.21 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.19 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.19 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.15 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.13 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.12 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.1 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.1 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.09 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.07 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.05 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.04 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.99 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.99 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.95 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.92 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.89 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.87 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.87 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.86 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.85 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.83 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.73 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.72 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.69 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.69 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.68 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.66 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.5 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.39 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.38 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.38 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.36 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.35 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.34 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.28 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.08 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.89 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.85 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.67 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.66 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.64 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.63 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.6 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.54 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.48 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.43 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.18 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.17 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.15 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.91 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.52 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.49 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.0 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.88 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.76 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.5 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.27 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.08 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.96 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.9 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.82 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.37 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.22 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.18 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.07 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.69 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.45 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.17 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.18 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.9 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.58 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.39 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.96 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.91 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.45 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.2 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.29 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 85.78 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.37 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.62 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.56 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 82.55 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 82.25 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 81.54 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.91 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-33 Score=280.19 Aligned_cols=402 Identities=9% Similarity=-0.060 Sum_probs=303.1
Q ss_pred CHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHH
Q 011905 58 DSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIF 136 (475)
Q Consensus 58 ~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 136 (475)
+...+..+++.+ ..++.+.|+.+|..+.. ..|+...+..++..+...|+++.|..+++.+... +++..+++.++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 334455555554 57788888888877653 2356677778888888889999998888876543 67888888888
Q ss_pred HHHHhcCCHHHHHHHHHhccc-C--------------CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCC------
Q 011905 137 NLCEKARLANEAMWVLRKMPE-F--------------DLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDL------ 195 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~-~--------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~------ 195 (475)
.+|.+.|++++|.++|+++.. . +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 889999999999998885432 2 2344678888888888888888888888888765331
Q ss_pred ----------------------------------------------------------------CCChhhHHHHHHHHHh
Q 011905 196 ----------------------------------------------------------------YPDIITYVSMIKGFCN 211 (475)
Q Consensus 196 ----------------------------------------------------------------~~~~~~~~~li~~~~~ 211 (475)
+++..+|+.++.++.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 2455566666666777
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 011905 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL 291 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 291 (475)
.|++++|.++|+++.+.+. .+..++..++.+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.
T Consensus 318 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH---PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHhccHHHHH
Confidence 7777777777777666542 255666667777777777777777777766532 456778888888888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011905 292 GILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG 371 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 371 (475)
++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888887653 33577888888888888888888888888887653 356778888888888888888888888888653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 372 VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ 447 (475)
Q Consensus 372 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 447 (475)
..+..+|+.+...|.+.|++++|.++|+++.+. +..|.....+|..++.+|.+.|++++|.++++++.+.+ +.+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 346788888888888888888888888888776 44442116788888888888888888888888888877 667
Q ss_pred hhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 448 GPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..++..+..+|.+.|++++|.+.++
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888888888888877654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=273.18 Aligned_cols=368 Identities=9% Similarity=-0.062 Sum_probs=312.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 171 (475)
++...|+.++..+.+.|+++.|..+++.+.+. .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56788999999999999999999999999854 678899999999999999999999999999653 67899999999
Q ss_pred HHHHhcCChhHHHHHHHHhccC---------------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------
Q 011905 172 RLFCEKGDMIAADELMKGMGLI---------------DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC------ 230 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~---------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~------ 230 (475)
.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 9999999999999999964322 2234688999999999999999999999999876432
Q ss_pred ----------------------------------------------------------------CcCHHHHHHHHHHHHh
Q 011905 231 ----------------------------------------------------------------AANLVAYSALLDGICR 246 (475)
Q Consensus 231 ----------------------------------------------------------------~~~~~~~~~ll~~~~~ 246 (475)
+++..+++.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 1566677777788888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 326 (475)
.|++++|.++|+++.+.+ +.+..+|+.++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|.
T Consensus 318 ~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID---PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 888888888888887643 3466777888888888888888888888887543 456788899999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
++|+++.+.+.. +..+|+.++.+|.+.|++++|+++|+++.+.+ ..+..++..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999875432 57789999999999999999999999998764 3477889999999999999999999999999865
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--hhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIWLQ--GPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..++..++.+|.+.|++++|.++++
T Consensus 472 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 472 ---QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 237788999999999999999999999999886 65676 6789999999999999999988764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-32 Score=258.84 Aligned_cols=206 Identities=16% Similarity=0.173 Sum_probs=135.7
Q ss_pred HHHHHHHHhcccCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC---------H
Q 011905 146 NEAMWVLRKMPEFDLRPDT-IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR---------L 215 (475)
Q Consensus 146 ~~A~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~---------~ 215 (475)
..+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..|||.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3445555666665554443 34667777777777777777777777777777777777777777766543 5
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011905 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILD 295 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 295 (475)
++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+ .++.||..+|+.+|.+|++.|++++|.++|+
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~--~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA--FGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 66777777777777777777777777777777777777777777776 3456777777777777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011905 296 RMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR 353 (475)
Q Consensus 296 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 353 (475)
+|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 7777777777777777777777777777777777777777777777777777766654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=261.12 Aligned_cols=205 Identities=12% Similarity=0.133 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC---------
Q 011905 217 DACGLFKVMKRHGCAANL-VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM--------- 286 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------- 286 (475)
.+..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+. |++||..+||.+|.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN--GVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 344455555555544333 24566666666666666666666666663 356666666666666665443
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (475)
+++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011905 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 367 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (475)
|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.+..| +..||+.++..|+.
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p--s~~T~~~l~~~F~s 222 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV--SKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB--CHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc--CHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666655 55666666666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-26 Score=217.81 Aligned_cols=377 Identities=14% Similarity=0.032 Sum_probs=322.7
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.++.+.|.+.+....... +.+...+..+...+...++++.|...++...+.. +.+..+|..+...+.+.|++++|..
T Consensus 12 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHH
Confidence 677888888876654432 2345666677778888999999999999888765 6788999999999999999999999
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011905 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
.|+++.+.. +.+...|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+..
T Consensus 89 ~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 165 (388)
T 1w3b_A 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-
Confidence 999998754 3456789999999999999999999999998754 3345667788888999999999999999998874
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+.+..+|..+...+.+.|++++|.+.|+++.+.. +.+...|..+...+...|++++|+..+++..... +.+..++.
T Consensus 166 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 3367899999999999999999999999999854 4567788999999999999999999999988763 33578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+..++.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+...|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 9999999999999999999999987643 56789999999999999999999999998763 457889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011905 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
++++|...++++.+.. | .+..++..+...|.+.|++++|.+.++++++.. |.+...+..+...+.+.|+
T Consensus 320 ~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF--P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSC--T-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhcC--C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999998864 2 467889999999999999999999999999876 6677788888888777663
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-26 Score=219.27 Aligned_cols=358 Identities=13% Similarity=0.021 Sum_probs=312.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh
Q 011905 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 180 (475)
...+...|+++.|.+.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+...|..+..++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 345567899999999999988764 5567777778889999999999999999988754 56888999999999999999
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011905 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
++|.+.|+++.... +.+..+|..+..++.+.|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999998754 44566899999999999999999999999998752 35667788889999999999999999999
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011905 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340 (475)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 340 (475)
.+.. +.+..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++....... +
T Consensus 162 l~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 162 IETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 8853 4567899999999999999999999999999864 335778889999999999999999999999886543 5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
..++..+...|...|++++|.+.|+++.+.+ +.+..++..+...+.+.|++++|...++++.+.. +.+..+|..+.
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~ 312 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLA 312 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHH
Confidence 7789999999999999999999999999864 2356789999999999999999999999999875 34788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+.+.|++++|.+.++++++.. +.+...+..+...+.+.|++++|.+.++
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999875 6778899999999999999999987764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-22 Score=195.21 Aligned_cols=366 Identities=11% Similarity=0.001 Sum_probs=293.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 171 (475)
.+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 345667777888889999999999999998764 5678999999999999999999999999998865 34688999999
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCCh---hhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHH
Q 011905 172 RLFCEKGDMIAADELMKGMGLIDLYPDI---ITYVSM------------IKGFCNAGRLEDACGLFKVMKRHGCAANLVA 236 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 236 (475)
.++.+.|++++|.+.|+++.... +.+. ..+..+ ...+...|++++|...|+.+.+.. +.+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 99999999999999999998754 2333 555555 344889999999999999998864 347889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----
Q 011905 237 YSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL---- 312 (475)
Q Consensus 237 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l---- 312 (475)
+..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...|...|++++|+..|+++.... +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK---NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHH
Confidence 9999999999999999999999998753 4678899999999999999999999999998753 2234444444
Q ss_pred --------HHHHHhcCCHHHHHHHHHHHHhCCCCC-C--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011905 313 --------IKGFCVEGNLDEAYQLIDKVVAGGSVS-S--GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 313 --------i~~~~~~~~~~~a~~~~~~~~~~~~~~-~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 381 (475)
...+.+.|++++|...|+.+.+..... . ...|..+...+.+.|++++|+..++++.+.. +.+...+..
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 788999999999999999998854321 1 3478889999999999999999999998753 336789999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH------------HHhcC-----CHHHHHHHHHHHH-HcC
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG------------LCRKN-----HSVEAAKLARFML-KKR 443 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m~-~~~ 443 (475)
+..+|...|++++|...++++.+.. | .+...+..+..+ |...| +.+++.+.++++. +..
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHN--E-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTS--S-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--c-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999854 3 356677766633 33344 6677888888743 332
Q ss_pred C--CCCh-------hhHHHHHHHHHhcCCHhHHhh
Q 011905 444 I--WLQG-------PYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 444 ~--~~~~-------~~~~~l~~~~~~~g~~~~a~~ 469 (475)
. .++. ..+..+..+|...|+.+...+
T Consensus 412 pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 412 PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 1 1222 377888999999998877654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-23 Score=196.64 Aligned_cols=320 Identities=12% Similarity=0.068 Sum_probs=271.3
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 205 (475)
+.+...+..+...+.+.|++++|+.+|+++.+.. +.+...|..+..++...|++++|.+.|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 5677889999999999999999999999998754 4578899999999999999999999999998765 5568889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCH---HHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCCc
Q 011905 206 IKGFCNAGRLEDACGLFKVMKRHGCAANL---VAYSAL------------LDGICRLGSMERALELLGEMEKEGGDCSPN 270 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 270 (475)
..++.+.|++++|...|+++.+... .+. ..+..+ ...+.+.|++++|.+.|+++.+.. +.+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~ 176 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWD 176 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC
Confidence 9999999999999999999998642 233 555555 444889999999999999998853 467
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH---
Q 011905 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSL--- 347 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--- 347 (475)
..++..+..+|.+.|++++|++.|+++.+.. +.+..++..+..+|...|++++|...|+++.+.... +...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHH
Confidence 8889999999999999999999999998763 446889999999999999999999999999875433 34444444
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCch
Q 011905 348 ---------VVELVRTKRLKEAEKLFSKMLASGVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDS 413 (475)
Q Consensus 348 ---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 413 (475)
...+...|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+.
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---p~~~ 329 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME---PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccH
Confidence 78899999999999999999875 454 4478888899999999999999999998864 2467
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
.+|..+..+|...|++++|.+.++++++.. |.+...+..+..+..
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence 899999999999999999999999999876 556677776664433
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-22 Score=198.50 Aligned_cols=359 Identities=12% Similarity=-0.060 Sum_probs=203.4
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++...|...|....... |+...|..+...+...|+++.|...++.+.+.+ +.+..++..+..++.+.|++++|.
T Consensus 18 ~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 93 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAM 93 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHH
Confidence 4677888888887776544 467777777888888888888888888877765 556677777888888888888888
Q ss_pred HHHHhcccCCCCCCHhh---------------------------------------------------------------
Q 011905 150 WVLRKMPEFDLRPDTII--------------------------------------------------------------- 166 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~--------------------------------------------------------------- 166 (475)
..|+++.+.+. ++...
T Consensus 94 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (514)
T 2gw1_A 94 FDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172 (514)
T ss_dssp HHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcC
Confidence 88888766542 12111
Q ss_pred ----------------HHHHHHHHHh---cCChhHHHHHHHHhcc-----CCC--------CCChhhHHHHHHHHHhcCC
Q 011905 167 ----------------YNNVIRLFCE---KGDMIAADELMKGMGL-----IDL--------YPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 167 ----------------~~~ll~~~~~---~g~~~~a~~~~~~m~~-----~~~--------~~~~~~~~~li~~~~~~~~ 214 (475)
+..+...+.. .|++++|...|+++.. ..- +.+..++..+...+...|+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (514)
T 2gw1_A 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND 252 (514)
T ss_dssp CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC
Confidence 1122222222 4555566666555544 210 1123344555555555566
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++|...++.+.+.. |+...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+
T Consensus 253 ~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 253 PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD---SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC---TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC---cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 666666665555543 225555555555556666666666665555432 234445555555555566666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-C
Q 011905 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-K 373 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~ 373 (475)
++..+.. +.+...+..+...+...|++++|...++.+.+.... +..++..+...+...|++++|...++++.+... .
T Consensus 328 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 328 DKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405 (514)
T ss_dssp HHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 5555442 223445555555555556666666666555543321 334455555555556666666665555543210 1
Q ss_pred CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 374 PD----GLACSVMIRELCL---GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 374 p~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.++++++..
T Consensus 406 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 406 DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 11 2245555555555 566666666666555543 1244555555555556666666666666555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-21 Score=191.96 Aligned_cols=366 Identities=11% Similarity=-0.086 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHH
Q 011905 95 FMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174 (475)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 174 (475)
..+......+...|+++.|...++.+.+.. |+...|..+..++.+.|++++|+..++++.+.+ +.+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 345566677888999999999999999876 689999999999999999999999999998765 45678999999999
Q ss_pred HhcCChhHHHHHHHHhccCCC-----------------------------------------------------------
Q 011905 175 CEKGDMIAADELMKGMGLIDL----------------------------------------------------------- 195 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~~----------------------------------------------------------- 195 (475)
.+.|++++|...|+++...+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999998865431
Q ss_pred -------------------CCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC--------CcCHHHHHHH
Q 011905 196 -------------------YPDIITYVSMIKGFCN---AGRLEDACGLFKVMKR-----HGC--------AANLVAYSAL 240 (475)
Q Consensus 196 -------------------~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~l 240 (475)
+.+...+......+.. .|++++|...|+++.+ ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1114445555555554 8999999999999988 311 2346678889
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 011905 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG 320 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 320 (475)
...+...|++++|.+.++++.+.. |+...+..+...+...|++++|...++++.... +.+...+..+...+...|
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC----ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 999999999999999999998853 347888899999999999999999999998764 346778899999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYE 400 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 400 (475)
++++|...++...+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999987644 56778899999999999999999999998753 2346788888999999999999999999
Q ss_pred HHHHcCCCCCCc----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 401 DIEKIGFLSSVD----SDIHSVLLLGLCR---KNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 401 ~~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
++.+..... ++ ...|..+...+.. .|++++|.+.+++++... +.+...+..+...+.+.|+++.|.+.++
T Consensus 397 ~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 397 LAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998753211 11 3389999999999 999999999999999887 6778889999999999999999987764
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-20 Score=183.82 Aligned_cols=385 Identities=12% Similarity=0.011 Sum_probs=193.3
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|...|....... +.+...+..+...+...|+++.|.+.++.+.+.+ +.+..++..+..++...|++++|.
T Consensus 37 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~ 113 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAM 113 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 5778888888887776543 2467778888888888889999999888888765 557788888888888889999999
Q ss_pred HHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCC------CCCChh-----------------------
Q 011905 150 WVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLID------LYPDII----------------------- 200 (475)
Q Consensus 150 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~----------------------- 200 (475)
..|+.+.. .|+.. +..+..+...+....|...++++.... ..|+..
T Consensus 114 ~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (537)
T 3fp2_A 114 FDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN 188 (537)
T ss_dssp HHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS
T ss_pred HHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccc
Confidence 88864432 12211 111222222333333444444432210 001110
Q ss_pred -------hHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCcC-------HHHHHHHHHHHHhcCChHHHHHHHH
Q 011905 201 -------TYVSMIKGFCN--------AGRLEDACGLFKVMKRHGCAAN-------LVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 201 -------~~~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
....+...+.. .|++++|..+++.+.+.... + ..++..+...+...|++++|.+.++
T Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 189 YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 01111111110 12455555555555443211 1 1233444444555555555555555
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011905 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 338 (475)
++.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.+..
T Consensus 268 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 342 (537)
T 3fp2_A 268 ESINL----HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE 342 (537)
T ss_dssp HHHHH----CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHhc----CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 55543 2334445555555555555555555555555432 223445555555555555555555555555543322
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CCchhh
Q 011905 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS---SVDSDI 415 (475)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~ 415 (475)
+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..... ......
T Consensus 343 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 420 (537)
T 3fp2_A 343 -NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP 420 (537)
T ss_dssp -CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHH
Confidence 23445555555555555555555555555432 1223344455555555555555555555554432100 001111
Q ss_pred HHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 416 HSVLLLGLCRK----------NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 416 ~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
+......+.+. |++++|.+.++++++.. +.+...+..+...+.+.|++++|.+.+
T Consensus 421 ~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 421 LIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22333344444 55555555555555544 344455555555555555555554443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.4e-20 Score=169.87 Aligned_cols=319 Identities=11% Similarity=0.050 Sum_probs=201.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
.+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 34444444555555555555555544432 2234455555555555555555555555554432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--cCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCA--ANLVAYSAL------------LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS 276 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 276 (475)
..|++++|...++.+.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~ 159 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDAELREL 159 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCchHHHHH
Confidence 555555555555555443210 122222222 456667777777777777776642 345666677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----------
Q 011905 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS----------- 345 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 345 (475)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++...+.... +...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 7777777777777777777776653 335666777777777777777777777777664432 222222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 346 -SLVVELVRTKRLKEAEKLFSKMLASGVKPD-G----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 346 -~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
.+...+.+.|++++|...++++.+.. |+ . ..+..+...+...|++++|...+++..+.. +.+..+|..+
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~ 312 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME---PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccHHHHHHH
Confidence 33666888999999999999988753 33 2 224456678889999999999999998864 2367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011905 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
...+...|++++|.+.++++++.. |.+......+..+....+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHH
Confidence 999999999999999999999876 566666777666655443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-18 Score=171.12 Aligned_cols=356 Identities=12% Similarity=-0.026 Sum_probs=269.3
Q ss_pred CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAM 149 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 149 (475)
..++.+.|.+.|....... +.+...+..+...+...|+++.|...++.+ .. .|+. ....+..+...+...+|.
T Consensus 71 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 71 STGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHH
Confidence 5789999999998876543 346778888899999999999999999743 22 2221 122244455555567788
Q ss_pred HHHHhcccCC------CCCCHh------------------------------hHHHHHHHHHh--------cCChhHHHH
Q 011905 150 WVLRKMPEFD------LRPDTI------------------------------IYNNVIRLFCE--------KGDMIAADE 185 (475)
Q Consensus 150 ~~~~~m~~~~------~~~~~~------------------------------~~~~ll~~~~~--------~g~~~~a~~ 185 (475)
..++.+.... ..|+.. ....+...+.. .|++++|..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 8888775531 111111 12222222221 247899999
Q ss_pred HHHHhccCCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHH
Q 011905 186 LMKGMGLIDLYPD-------IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLG 258 (475)
Q Consensus 186 ~~~~m~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 258 (475)
+++++.+.. +.+ ..++..+...+...|++++|...++.+.+. .|+...+..+...|...|++++|.+.++
T Consensus 224 ~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 300 (537)
T 3fp2_A 224 MYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQ 300 (537)
T ss_dssp HHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998754 222 234667778888999999999999999987 4568889999999999999999999999
Q ss_pred HHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011905 259 EMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV 338 (475)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 338 (475)
++.+.. +.+..+|..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+....
T Consensus 301 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 301 KAVDLN---PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhccC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 998853 4567889999999999999999999999998864 335678889999999999999999999999887533
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHH
Q 011905 339 SSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG-----VKPDGLACSVMIRELCLG----------GQVLEGFCLYEDIE 403 (475)
Q Consensus 339 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~ 403 (475)
+...+..+...+...|++++|.+.|+++.+.. .......+..+...+... |++++|...++++.
T Consensus 377 -~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 377 -LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 56688999999999999999999999987642 111112233444566777 99999999999999
Q ss_pred HcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 404 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+.. +.+..+|..+...|.+.|++++|.+.|+++++..
T Consensus 456 ~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 456 ELD---PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 875 2467889999999999999999999999999886
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-18 Score=161.13 Aligned_cols=318 Identities=10% Similarity=-0.005 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011905 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 173 (475)
...+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 4556677788888999999999999998865 5678899999999999999999999999988754 3467889999999
Q ss_pred HHhcCChhHHHHHHHHhccCCCC---CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011905 174 FCEKGDMIAADELMKGMGLIDLY---PDIITYVSM------------IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~~~~---~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...|++++|.+.|+++.... + .+...+..+ ...+...|++++|...++.+.+.. +.+...+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 999999999999999998654 2 244445444 578889999999999999998875 34788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--------
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS-------- 310 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-------- 310 (475)
.+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~ 234 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK---SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 234 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH
Confidence 99999999999999999999999853 5678889999999999999999999999988763 22333332
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011905 311 ----TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG----GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 311 ----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.+...+.+.|++++|...++.+.+.... +. ..+..+...+...|++++|.+.+++..+.. +.+...+..+
T Consensus 235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 312 (359)
T 3ieg_A 235 NKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 2356688999999999999999886543 22 335567889999999999999999998753 3367889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
...+...|++++|...++++.+.. | .+...+..+..+..
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~~~--p-~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQEHN--E-NDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--T-TCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--C-CChHHHHHHHHHHH
Confidence 999999999999999999999864 2 35666666655543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-19 Score=164.35 Aligned_cols=295 Identities=12% Similarity=-0.044 Sum_probs=225.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 011905 161 RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSAL 240 (475)
Q Consensus 161 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 240 (475)
+.+...+..+...+...|++++|.++|+++.... +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4456667777778888888888888888877654 4455667777788888888888888888887764 3356778888
Q ss_pred HHHHHhcC-ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011905 241 LDGICRLG-SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 241 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 88888888 8888888888888743 3456778888888888888888888888887764 22456666788888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCC
Q 011905 320 GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASG--------VKPDGLACSVMIRELCLGGQ 391 (475)
Q Consensus 320 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~ 391 (475)
|++++|...+++..+.... +...+..+...+...|++++|...++++.+.. ...+...+..+...+...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 8888888888888876543 56778888888889999999999888887531 12234678888888899999
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH-HhcCCHhH
Q 011905 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL-KKSGDEEL 466 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~g~~~~ 466 (475)
+++|...++++.+.. +.+...|..+...+.+.|++++|.+.++++++.. +.+...+..+..++ ...|+.+.
T Consensus 252 ~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 252 YAEALDYHRQALVLI---PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchhc
Confidence 999999999988865 2367788889999999999999999999988776 56777788888877 45565543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.4e-19 Score=165.91 Aligned_cols=286 Identities=14% Similarity=0.019 Sum_probs=186.3
Q ss_pred CChhHHHH-HHHHhccCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011905 178 GDMIAADE-LMKGMGLIDL---YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 178 g~~~~a~~-~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
|++++|.+ .+++...... ..+...+..+...+...|++++|...|+++.+.. +.+..++..+..+|.+.|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 55555555 5554433210 0123445555566666666666666666665543 22455566666666666666666
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHh
Q 011905 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST---------------LIKGFCV 318 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~---------------li~~~~~ 318 (475)
.+.|+++.+.. +.+..++..+...+...|++++|.+.++++...... +...+.. .+..+..
T Consensus 118 ~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 118 ISALRRCLELK---PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 66666665532 334555666666666666666666666666554211 1111110 2333347
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011905 319 EGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 319 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 397 (475)
.|++++|...++++.+..... +..++..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888888988888888765432 46778888888889999999999998888653 3356788888888888999999999
Q ss_pred HHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------hhhHHHHHHHHHhcCCHhH
Q 011905 398 LYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ-----------GPYVDKIVEHLKKSGDEEL 466 (475)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~ 466 (475)
.++++.+.. +.+..+|..+..+|.+.|++++|.+.++++++.. +.+ ..++..+..++...|+.+.
T Consensus 273 ~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 273 AYRRALELQ---PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999888864 2367788888899999999999999998888754 222 6788889999999999998
Q ss_pred Hhhcccc
Q 011905 467 ITNLPKI 473 (475)
Q Consensus 467 a~~l~~~ 473 (475)
|..+.+.
T Consensus 349 A~~~~~~ 355 (368)
T 1fch_A 349 YGAADAR 355 (368)
T ss_dssp HHHHHTT
T ss_pred HHHhHHH
Confidence 8877654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-18 Score=159.64 Aligned_cols=294 Identities=9% Similarity=-0.083 Sum_probs=223.5
Q ss_pred ccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH
Q 011905 126 VVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM 205 (475)
Q Consensus 126 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 205 (475)
+.+...+..+...+...|++++|..+|+++.+.. +.+...+..++..+...|++++|..+++++.... +.+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4455667777778888888888888888887654 3455667777788888888888888888887654 4466778888
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011905 206 IKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 206 i~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
...+...| ++++|...|++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHH
Confidence 88888888 8888888888888764 3356778888888888888888888888888753 33456677788888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCC
Q 011905 285 GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG--------SVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~ 356 (475)
|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. ......++..+...|...|+
T Consensus 173 ~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 88888888888887763 3456778888888888899999988888887632 12234678888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH-HhcCCHH
Q 011905 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL-CRKNHSV 430 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 430 (475)
+++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. | .+...+..+..++ ...|+.+
T Consensus 252 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 252 YAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR--R-DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC--S-CCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC--C-CchHHHHHHHHHHHHHhCchh
Confidence 999999998888653 2355677888888888999999999998887754 2 3667777777777 3455543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-16 Score=149.50 Aligned_cols=338 Identities=13% Similarity=0.002 Sum_probs=250.8
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHh----c
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRI----KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----A 142 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 142 (475)
.++...|...|...... + +...+..+...+.. .++.+.|.+.++...+.| +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 57778888887777654 2 45566666666666 778888888888877765 55666667777777 6
Q ss_pred CCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCC
Q 011905 143 RLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE----KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN----AGR 214 (475)
Q Consensus 143 ~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~ 214 (475)
+++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .++
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcC
Confidence 78888888888887754 56677777777776 678888888888877654 56677777777776 788
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCC
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGM 286 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 286 (475)
.++|.+.|++..+.| +...+..+...|.. .+++++|.++|++..+.+ +...+..+...|.. .++
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~~~~~d 274 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-----NSIAQFRLGYILEQGLAGAKE 274 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHCCCCCCCC
Confidence 888888888887764 56677777777775 778888888888887742 45566666666766 788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHH
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVE-----GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK---RLK 358 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~ 358 (475)
.++|+..|++..+.| +...+..+...|... +++++|...++...+.+ +...+..+...|...| +.+
T Consensus 275 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~ 348 (490)
T 2xm6_A 275 PLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHK 348 (490)
T ss_dssp HHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHH
Confidence 888888888877654 455666677777776 78888888888888765 3456667777777655 678
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHH
Q 011905 359 EAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSV 430 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 430 (475)
+|++.|++..+.| +...+..|-..|.. .++.++|...|++..+.+ +...+..+...|.. .++++
T Consensus 349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-----LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHcCCCCCCCHH
Confidence 8888888887763 45667777777777 678888888888888765 45667778777777 78888
Q ss_pred HHHHHHHHHHHcC
Q 011905 431 EAAKLARFMLKKR 443 (475)
Q Consensus 431 ~A~~~~~~m~~~~ 443 (475)
+|.++|++..+.+
T Consensus 421 ~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 421 QAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 8888888888876
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-18 Score=161.20 Aligned_cols=293 Identities=13% Similarity=-0.014 Sum_probs=230.8
Q ss_pred hcCCHHHHHH-HHHhcccCCC---CCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 141 KARLANEAMW-VLRKMPEFDL---RPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 141 ~~~~~~~A~~-~~~~m~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..|++++|.+ .|++...... ..+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3578899998 8887665421 1135678889999999999999999999998765 567788999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH---------------HHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS---------------VIQIF 281 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------------li~~~ 281 (475)
+|...|+++.+.. +.+..++..+...|...|++++|.+.++++.... +.+...+.. .+..+
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT---PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999998875 3478899999999999999999999999998853 222222221 23344
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 282 CGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
...|++++|...++++.+..... +..++..+...+...|++++|...++++.+.... +..++..+...+...|++++|
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHH
Confidence 48899999999999998764221 5788999999999999999999999999886532 567899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------CCchhhHHHHHHHHHhcCCHHHH
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS--------SVDSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A 432 (475)
...|+++.+.. +.+...+..+...|...|++++|...++++.+..... +....+|..+..+|...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998753 3457888999999999999999999999998753110 11268899999999999999999
Q ss_pred HHHHHHHH
Q 011905 433 AKLARFML 440 (475)
Q Consensus 433 ~~~~~~m~ 440 (475)
..++++.+
T Consensus 350 ~~~~~~~l 357 (368)
T 1fch_A 350 GAADARDL 357 (368)
T ss_dssp HHHHTTCH
T ss_pred HHhHHHHH
Confidence 99876443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-18 Score=161.80 Aligned_cols=265 Identities=12% Similarity=-0.019 Sum_probs=191.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHH
Q 011905 198 DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSV 277 (475)
Q Consensus 198 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 277 (475)
+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ---PNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHH
Confidence 34456677777777777777777777777654 3366777777777777777777777777777642 3456677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHH
Q 011905 278 IQIFCGKGMMKEALGILDRMEALGCAPN-----------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYS 345 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 345 (475)
...|...|++++|...++++.+.. |+ ...+..+...+...|++++|...++++.+..... +..++.
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 217 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT 217 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHH
Confidence 777777777777777777776542 21 2223345677888888999999998888765432 567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (475)
.+...|...|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...++++.+.. +.+..+|..+..+|.+
T Consensus 218 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 218 GLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ---PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHH
Confidence 88888889999999999999888753 3357788888888999999999999999988864 2367888889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 426 KNHSVEAAKLARFMLKKRIW-----------LQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
.|++++|.+.++++++.... .+...+..+..++...|+.+.+.++.+
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999988865311 136778889999999999988877654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-18 Score=159.56 Aligned_cols=269 Identities=12% Similarity=-0.018 Sum_probs=217.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 011905 162 PDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALL 241 (475)
Q Consensus 162 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 241 (475)
.+...+..+...+.+.|++++|.+.|+++.... +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 355668889999999999999999999998765 5578889999999999999999999999998864 34688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCCCCc-H----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 011905 242 DGICRLGSMERALELLGEMEKEGGDCSPN-V----------VTYTSVIQIFCGKGMMKEALGILDRMEALGCA-PNRVTI 309 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~ 309 (475)
..|.+.|++++|.+.++++.+.. |+ . ..+..+...+...|++++|...++++.+.... ++..++
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN----PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC----HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC----ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 99999999999999999998742 32 2 22334577889999999999999999886422 157889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011905 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG 389 (475)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 389 (475)
..+...+...|++++|...+++..+.... +..+|..+..+|...|++++|...|+++.+.. +.+..++..+...|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 99999999999999999999999886543 57789999999999999999999999998763 23478889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC---------CCCchhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 390 GQVLEGFCLYEDIEKIGFL---------SSVDSDIHSVLLLGLCRKNHSVEAAKLARF 438 (475)
Q Consensus 390 g~~~~a~~~~~~~~~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 438 (475)
|++++|...++++.+.... +..+..+|..+..++...|+.+.+.++.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999875311 011367899999999999999988887654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-15 Score=144.21 Aligned_cols=346 Identities=12% Similarity=-0.029 Sum_probs=280.9
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHh----cCCHHHHHHHHHhcccCCCCCCH
Q 011905 93 SSFMYNRACEMSRI----KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEK----ARLANEAMWVLRKMPEFDLRPDT 164 (475)
Q Consensus 93 ~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~~~~ 164 (475)
+...+..+...+.. .++.+.|.+.++...+.| +...+..+...|.. .+++++|...|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444455555555 788999999999888865 56777788888888 889999999999988854 66
Q ss_pred hhHHHHHHHHHh----cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCcCHHH
Q 011905 165 IIYNNVIRLFCE----KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN----AGRLEDACGLFKVMKRHGCAANLVA 236 (475)
Q Consensus 165 ~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~ 236 (475)
..+..|...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 777888888888 789999999999988765 56777778888876 789999999999998875 6778
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011905 237 YSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 237 ~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..+...|.. .++.++|.+.|++..+. .+...+..+...|.. .+++++|..+|++..+.| +...
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a 257 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATS-----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA 257 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 8888888888 89999999999999884 356677778888876 789999999999988765 4566
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHH
Q 011905 309 ISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT-----KRLKEAEKLFSKMLASGVKPDGLAC 379 (475)
Q Consensus 309 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~ 379 (475)
+..+...|.. .++.++|...|+...+.+ +...+..+...|... +++++|+..|++..+.| +...+
T Consensus 258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 7777777777 889999999999998775 455677788888877 89999999999998875 44566
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 380 SVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 380 ~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
..+...|...| +.++|.+.+++..+.+ +...+..+...|.. .+++++|.++|++..+.+ ++..+.
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~ 403 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG-----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQV 403 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHH
Confidence 67777777666 7899999999999875 56788888888888 899999999999999876 467788
Q ss_pred HHHHHHHh----cCCHhHHhhccc
Q 011905 453 KIVEHLKK----SGDEELITNLPK 472 (475)
Q Consensus 453 ~l~~~~~~----~g~~~~a~~l~~ 472 (475)
.+...|.. .++.++|.+..+
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~ 427 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFD 427 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHH
Confidence 88888888 889998887654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-15 Score=147.64 Aligned_cols=401 Identities=11% Similarity=0.007 Sum_probs=286.4
Q ss_pred CHHHHHHHHhhhCCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHH
Q 011905 58 DSTCVIEVLHRCFPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFN 137 (475)
Q Consensus 58 ~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 137 (475)
+...+..++.....++.+.|..+|..+... ++.+...+...+....+.++++.|..+++.+.... |+...|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 344444444433467888999999887653 45678888899999999999999999999998864 68888877775
Q ss_pred H-HHhcCCHHHHHH----HHHhccc-CCCC-CCHhhHHHHHHHHHh---------cCChhHHHHHHHHhccCCCCCChhh
Q 011905 138 L-CEKARLANEAMW----VLRKMPE-FDLR-PDTIIYNNVIRLFCE---------KGDMIAADELMKGMGLIDLYPDIIT 201 (475)
Q Consensus 138 ~-~~~~~~~~~A~~----~~~~m~~-~~~~-~~~~~~~~ll~~~~~---------~g~~~~a~~~~~~m~~~~~~~~~~~ 201 (475)
. ....|+.++|.+ +|+...+ .|.. ++...|...+....+ .|+++.|..+|++.......+....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 3 345677766655 7776654 2433 356778877776654 6889999999999987311111234
Q ss_pred HHHHHHHH-------------HhcCCHHHHHHHHHHHH------HCC---CCcC--------HHHHHHHHHHHHhc----
Q 011905 202 YVSMIKGF-------------CNAGRLEDACGLFKVMK------RHG---CAAN--------LVAYSALLDGICRL---- 247 (475)
Q Consensus 202 ~~~li~~~-------------~~~~~~~~a~~~~~~m~------~~g---~~~~--------~~~~~~ll~~~~~~---- 247 (475)
|....... .+.++++.|..+++.+. +.. ++|+ ...|...+......
T Consensus 168 ~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~ 247 (530)
T 2ooe_A 168 WRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRT 247 (530)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccC
Confidence 43332211 13455677777776532 211 2343 24555555433322
Q ss_pred CCh----HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHH
Q 011905 248 GSM----ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-------KGMMK-------EALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 248 g~~----~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~~~~p~~~~~ 309 (475)
++. +.+..+|+++.... +.+...|..++..+.+ .|+++ +|..++++..+.-.+.+...+
T Consensus 248 ~~~~~~~~~a~~~y~~al~~~---p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 248 EDQTLITKRVMFAYEQCLLVL---GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred CcchhHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 47788999888742 4567888888888775 79987 899999998863234467888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH-HH
Q 011905 310 STLIKGFCVEGNLDEAYQLIDKVVAGGSVSS-GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIR-EL 386 (475)
Q Consensus 310 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~-~~ 386 (475)
..++..+.+.|++++|..+|+.+++.... + ...|..++..+.+.|++++|.++|++..+. .|+ ...+..... .+
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~ 401 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEY 401 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHH
Confidence 99999999999999999999999985432 2 357888899899999999999999999875 332 222322221 23
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcC
Q 011905 387 CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ----GPYVDKIVEHLKKSG 462 (475)
Q Consensus 387 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~g 462 (475)
...|+.++|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++.+..+ +.+ ...|...+....+.|
T Consensus 402 ~~~~~~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC-CSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHcCChhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHcC
Confidence 46899999999999998864 2467899999999999999999999999999875 223 337888888889999
Q ss_pred CHhHHhhccc
Q 011905 463 DEELITNLPK 472 (475)
Q Consensus 463 ~~~~a~~l~~ 472 (475)
+.+.+..+.+
T Consensus 478 ~~~~~~~~~~ 487 (530)
T 2ooe_A 478 DLASILKVEK 487 (530)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9999887654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7.6e-17 Score=147.84 Aligned_cols=276 Identities=10% Similarity=-0.054 Sum_probs=157.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34445555555555555555555554432 2344455555555555555555555555555442 224445555555555
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhcCCHH
Q 011905 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL-IK-GFCVEGNLD 323 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~-~~~~~~~~~ 323 (475)
..|++++|.+.++++.+.. +.+...+..+... .|+......+ .. .+...|+++
T Consensus 101 ~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ---PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS---TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC---CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 5555555555555555431 1111111111000 0000000111 11 255666777
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIE 403 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 403 (475)
+|...++++.+.... +...+..+...|...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777665432 45667777777777777777777777776542 2345667777777777777888877777777
Q ss_pred HcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 404 KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL-----------QGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 404 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+.. +.+..+|..+...+.+.|++++|.+.++++++..... +...+..+..++.+.|+.+.|..+.+
T Consensus 234 ~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 234 DIN---PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HcC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 654 2356677777777777888888888887777654211 46677777778888888887777665
Q ss_pred c
Q 011905 473 I 473 (475)
Q Consensus 473 ~ 473 (475)
.
T Consensus 311 ~ 311 (327)
T 3cv0_A 311 Q 311 (327)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-17 Score=148.98 Aligned_cols=283 Identities=11% Similarity=-0.052 Sum_probs=186.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 207 (475)
+...+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|.+.++++.... +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 45566777889999999999999999998754 3578889999999999999999999999998764 557788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH--HHHhcC
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ--IFCGKG 285 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g 285 (475)
.+...|++++|.+.++.+.+.... +...+..+... .|+......+.. .+...|
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~ 152 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA------------------------DVDIDDLNVQSEDFFFAAPN 152 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------------------------------CCTTSHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH------------------------HHHHHHHHHHHHhHHHHHcc
Confidence 999999999999999999886422 22223222100 011111111111 134445
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (475)
++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|.+.++
T Consensus 153 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 153 EYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555555555442 224455555556666666666666666665554322 34556667777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------CCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 366 KMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLS---------SVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
++.+.. +.+...+..+...+...|++++|.+.++++.+..... ..+..+|..+..++.+.|++++|.+++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 766542 2345666677777777777777777777776653110 004567778888888888888888877
Q ss_pred HHHH
Q 011905 437 RFML 440 (475)
Q Consensus 437 ~~m~ 440 (475)
++.+
T Consensus 310 ~~~l 313 (327)
T 3cv0_A 310 AQNV 313 (327)
T ss_dssp TCCS
T ss_pred HHHH
Confidence 6543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-16 Score=141.87 Aligned_cols=252 Identities=10% Similarity=-0.004 Sum_probs=122.7
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.....|+++.|+..++................+.++|...|+++.|+..++.. -+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence 33445666666666655543221111223344555666666666665544331 13445555555555666666666
Q ss_pred HHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 218 ACGLFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 218 a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
|++.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666655544322 344444455556666666666665554 13445555555556666666666666665
Q ss_pred HHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011905 297 MEALGCAPNRVTI---STLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVK 373 (475)
Q Consensus 297 m~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 373 (475)
+.+.. |+.... ...+..+...|++++|..+|+++.+... .+...++.+..++.+.|++++|...+++..+.. +
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 55542 332111 1111222233455555555555554421 244445555555555555555555555544432 1
Q ss_pred CCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 011905 374 PDGLACSVMIRELCLGGQVLE-GFCLYEDIEKI 405 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 405 (475)
-+..++..++..+...|+.++ +.++++++.+.
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 233444444444444554433 34455554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-16 Score=138.55 Aligned_cols=252 Identities=11% Similarity=0.024 Sum_probs=139.4
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011905 173 LFCEKGDMIAADELMKGMGLIDLYPD--IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
-....|+++.|+..++...... |+ ......+.++|...|+++.|+..++. .-+|+..++..+...+...|+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcH
Confidence 3444566666666666554322 22 22334455666666666666654433 1244555666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011905 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLID 330 (475)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 330 (475)
++|++.++++...+. .+.+...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.++
T Consensus 82 ~~A~~~l~~ll~~~~-~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 82 DAIVAELDREMSRSV-DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHSCC-CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666654210 122344455555666666666666666655 3455566666666666666666666666
Q ss_pred HHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 331 KVVAGGSVSSGGCY---SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 331 ~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
.+.+.+ |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+..
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~- 230 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 666543 221111 112222333466666666666666542 3345556666666666666666666666666553
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 011905 408 LSSVDSDIHSVLLLGLCRKNHSVE-AAKLARFMLKKR 443 (475)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~ 443 (475)
+.+..++..++..+...|+.++ +.++++++++..
T Consensus 231 --p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 --SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp --TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred --CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 2355566666666666666654 455666666554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-17 Score=151.31 Aligned_cols=286 Identities=9% Similarity=-0.034 Sum_probs=123.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 011905 105 RIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAAD 184 (475)
Q Consensus 105 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 184 (475)
...++.+.|.+.++.+ +++.+|..+..++.+.|++++|++.|.+. +|...|..++.++...|++++|.
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 3456788888888776 23358888888888888888888888653 56678888888888888888888
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q 011905 185 ELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG 264 (475)
Q Consensus 185 ~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 264 (475)
++++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 877766653 4557778888888888888888887774 367778888888898899999998888865
Q ss_pred CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 011905 265 GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCY 344 (475)
Q Consensus 265 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 344 (475)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|...... +...+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhH
Confidence 25888888889999999988888877 2678888888889988988888554443 22233445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----CchhhHHHH
Q 011905 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-----VDSDIHSVL 419 (475)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~l 419 (475)
..++..|.+.|++++|..+++...... +-....|+-|--+|++- ++++..+.++.....-..|+ .+...|..+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 568888888899999988888887543 34456666666566554 44444444443333322232 256778888
Q ss_pred HHHHHhcCCHHHHHHH
Q 011905 420 LLGLCRKNHSVEAAKL 435 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~ 435 (475)
+..|...++++.|...
T Consensus 289 ~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 289 VFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHTTCHHHHHHH
T ss_pred HHHHHhhchHHHHHHH
Confidence 8888888888888764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.4e-19 Score=173.64 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=108.2
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011905 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEG-GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
.-..||+++|++||+.|++++|.++|++|.+.+ .++.||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 345678888888888888888888887776421 2457888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 011905 311 TLIKGFCVEGN-LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD------GLACSVMI 383 (475)
Q Consensus 311 ~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li 383 (475)
++|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..+..|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 88888888876 467788888888888888888888877655443 333344433 2334443 33444455
Q ss_pred HHHHhcC
Q 011905 384 RELCLGG 390 (475)
Q Consensus 384 ~~~~~~g 390 (475)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=172.25 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=85.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhcc---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGL---IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSA 239 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 239 (475)
-..+||+||++||+.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 445777777777777777777777766543 46677777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011905 240 LLDGICRLGSM-ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 240 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
+|.++++.|+. ++|.++|++|.+. |+.||..+|+.++.++.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k--G~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE--GLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH--TCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc--CCCCChhhcccccChhhH
Confidence 77777777763 5677777777774 457777777777655444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-14 Score=140.60 Aligned_cols=370 Identities=11% Similarity=0.001 Sum_probs=269.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHH
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVI 171 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll 171 (475)
.+...|..++.. ...++++.|..+++.+.+.. |-+...|...+..+.+.|++++|..+|+++.... |+...|...+
T Consensus 11 ~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 466777777874 66899999999999998864 6688899999999999999999999999998864 6888888777
Q ss_pred HHH-HhcCChhHHHH----HHHHhcc-CCCC-CChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCcCHH
Q 011905 172 RLF-CEKGDMIAADE----LMKGMGL-IDLY-PDIITYVSMIKGFCN---------AGRLEDACGLFKVMKRHGCAANLV 235 (475)
Q Consensus 172 ~~~-~~~g~~~~a~~----~~~~m~~-~~~~-~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g~~~~~~ 235 (475)
... ...|+.+.|.+ +|+.... .|.. ++...|...+....+ .|+++.|..+|++..+........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 533 35677777665 6666543 2433 356677777776654 688999999999998842111123
Q ss_pred HHHHHHHHH-------------HhcCChHHHHHHHHHHH------hcCC-CCCCc--------HHHHHHHHHHHHhc---
Q 011905 236 AYSALLDGI-------------CRLGSMERALELLGEME------KEGG-DCSPN--------VVTYTSVIQIFCGK--- 284 (475)
Q Consensus 236 ~~~~ll~~~-------------~~~g~~~~a~~~~~~~~------~~~~-~~~~~--------~~~~~~li~~~~~~--- 284 (475)
.|....... .+.+++..|..++.++. +... .++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 443322211 13456777877776632 2111 12343 24566555443322
Q ss_pred -CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCChhhHH
Q 011905 285 -GMM----KEALGILDRMEALGCAPNRVTISTLIKGFCV-------EGNLD-------EAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 285 -g~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
++. +++..+|++..... +-+...|......+.+ .|+++ +|..++++.++.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 232 47788898888752 4467788888887775 69987 8999999998632233578899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH-
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPD-G-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG- 422 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~- 422 (475)
.++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|+++|++..+.. +.+...|......
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~---~~~~~~~~~~a~~~ 400 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALME 400 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT---TCCTHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc---CCchHHHHHHHHHH
Confidence 9999999999999999999999975 554 2 578888888889999999999999999853 2233444333222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 423 LCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 423 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
+...|++++|.++|++.++.. +.++..+..++..+.+.|+.+.|..+++
T Consensus 401 ~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 401 YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 346899999999999999876 6678999999999999999999988765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-17 Score=151.51 Aligned_cols=282 Identities=13% Similarity=0.090 Sum_probs=136.3
Q ss_pred hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACG 220 (475)
Q Consensus 141 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 220 (475)
+.|++++|.++++++.. ..+|..|+.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~~------~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE------PAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC------hHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 56778999999999832 35999999999999999999999965 3677899999999999999999999
Q ss_pred HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 221 LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 221 ~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT---------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 88777664 4567889999999999999999988773 267779999999999999999999999976
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011905 301 GCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACS 380 (475)
Q Consensus 301 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 380 (475)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 36999999999999999999999998 26788999999999999999996655542 23444455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------ChhhHH
Q 011905 381 VMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK--NHSVEAAKLARFMLKKRIWL------QGPYVD 452 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~~------~~~~~~ 452 (475)
.++..|.+.|++++|..+++...... +-....|+-+...|++- ++..+.+++|.. ..++++ +...|.
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le---~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHH
Confidence 78899999999999999999998754 23678899888888764 345555554432 223333 567889
Q ss_pred HHHHHHHhcCCHhHHhhc
Q 011905 453 KIVEHLKKSGDEELITNL 470 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l 470 (475)
.+.-.|.+.++++.|...
T Consensus 287 e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHH
Confidence 999999999999987654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.5e-14 Score=142.54 Aligned_cols=344 Identities=14% Similarity=0.081 Sum_probs=225.9
Q ss_pred CCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHH
Q 011905 57 LDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSS-YRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKV 134 (475)
Q Consensus 57 ~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 134 (475)
.+|+.+....+.. ..+.+..++..+......+. |..+...-+.++....+. +.....+.++..... ...-
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~e 1054 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPD 1054 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHH
Confidence 3444444444443 45555555555554443322 222333333333333222 333333433333210 1122
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC
Q 011905 135 IFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR 214 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~ 214 (475)
+...+...|++++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+..++...|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 45566777888888888887531 2222233332 567788888887755 246778888888888888
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGIL 294 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 294 (475)
+++|...|.+. -|...|..++.+|.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 88888888553 367788888888888899999988888777632 33333445888888888877544332
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011905 295 DRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 295 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (475)
+ .++...|..+...|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 345566777888888889999999988885 24888889999999999999888876 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011905 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+..+|..+-.+|...|++..|......+.. +...+..++..|.+.|.+++|+++++..+... +-....|..+
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~Iiv-------~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-------HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 557888888888888888888776554322 45667788889999999999999998887655 5555566666
Q ss_pred HHHHHhcC
Q 011905 455 VEHLKKSG 462 (475)
Q Consensus 455 ~~~~~~~g 462 (475)
..++.+..
T Consensus 1321 aiLyaKy~ 1328 (1630)
T 1xi4_A 1321 AILYSKFK 1328 (1630)
T ss_pred HHHHHhCC
Confidence 66555543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.1e-14 Score=135.60 Aligned_cols=361 Identities=10% Similarity=-0.035 Sum_probs=237.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc--------CCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccC----
Q 011905 91 RHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE--------GCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEF---- 158 (475)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---- 158 (475)
.+....|+.+..+....|+.++|++.++...+. ..+....+|+.+...|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 344567888888999999999999998876431 12334678888999999999999999998876541
Q ss_pred -C--CCCCHhhHHHHHHHHHhc--CChhHHHHHHHHhccCCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHHHCCC
Q 011905 159 -D--LRPDTIIYNNVIRLFCEK--GDMIAADELMKGMGLIDLYPDIITYVSMIKG---FCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 159 -~--~~~~~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
+ ......++..+..++.+. +++++|.+.|++..+.. +-+...+..+..+ +...++.++|++.+++..+..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1 112345666666666554 57899999999988654 3344555555444 345677788999998888764
Q ss_pred CcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011905 231 AANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
+.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|+..+++..+.. +-+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 281 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA---PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNA 281 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChH
Confidence 3356666666655554 467889999999988753 4567788899999999999999999999988763 2345
Q ss_pred HHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 307 VTISTLIKGFCVE-------------------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 307 ~~~~~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
..+..+..+|... +..+.|...++...+.+.. +..++..+...|...|++++|++.|++.
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 5666655554322 2356777788877765433 4566888999999999999999999999
Q ss_pred HHCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 368 LASGVKPDGL--ACSVMIR-ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 368 ~~~~~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 444 (475)
.+....+... .+..+.. .....|+.++|+..+++..+... +.... .+....+.+++++.+...
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~----~~~~~---------~~~~~~l~~~~~~~l~~~- 426 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ----KSREK---------EKMKDKLQKIAKMRLSKN- 426 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC----CCHHH---------HHHHHHHHHHHHHHHHHC-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc----ccHHH---------HHHHHHHHHHHHHHHHhC-
Confidence 8764333221 1222222 23567899999999998887532 11111 111233344455555544
Q ss_pred CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 445 WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
|.++.++..+..++...|++++|.+..+
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555666666666666666666665544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-12 Score=133.65 Aligned_cols=310 Identities=9% Similarity=-0.039 Sum_probs=168.2
Q ss_pred hcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 011905 106 IKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADE 185 (475)
Q Consensus 106 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 185 (475)
..+++++|.++.+.. -+..+|..+..++.+.|++++|++.|.+. -|...|..++.++.+.|++++|.+
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence 334455555544432 23455555555555555555555555443 244455555555555555555555
Q ss_pred HHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q 011905 186 LMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGG 265 (475)
Q Consensus 186 ~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 265 (475)
++...++.. ++....+.++.+|++.+++++...+. + .++...|..+...|...|++++|..+|....
T Consensus 1156 yL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---- 1222 (1630)
T 1xi4_A 1156 YLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---- 1222 (1630)
T ss_pred HHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh----
Confidence 555544332 22222223555555555555322221 1 2344444455555555666666666555431
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 011905 266 DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 266 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
.|..+...|++.|++++|.+.+++. .+..+|..+-.+|...|++..|...... +..+...+.
T Consensus 1223 -------ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLe 1284 (1630)
T 1xi4_A 1223 -------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELE 1284 (1630)
T ss_pred -------HHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHH
Confidence 3555555666666666666555544 1345555555555555555555554432 222445577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----CchhhHHHHH
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS-----VDSDIHSVLL 420 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~li 420 (475)
.++..|.+.|.+++|+.+++..+... +-....|+-|...+++. ++++..+.++...+....|+ .+...|..++
T Consensus 1285 eli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy-~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv 1362 (1630)
T 1xi4_A 1285 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 1362 (1630)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-CHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHH
Confidence 78888888888888888887776432 22334555555555543 33433333333334433332 2567788888
Q ss_pred HHHHhcCCHHHHHHH-------------HHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011905 421 LGLCRKNHSVEAAKL-------------ARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~-------------~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
..|.+.|+++.|... |.+.+. -..++..|...+.-|...+
T Consensus 1363 ~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1363 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 889999999988732 222111 1456677777777776666
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-14 Score=128.53 Aligned_cols=228 Identities=9% Similarity=-0.004 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYT 275 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 275 (475)
..+..+...+...|++++|...|++..+.. .+..++..+..+|...|++++|.+.+++..+......++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345555555666666666666666665554 455566666666666666666666666655421100011 35566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011905 276 SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK 355 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 355 (475)
.+...+...|++++|...+++..+.. |+. ..+.+.|++++|...++.+...... +...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 66666666666666666666666542 332 2345556677777777777665322 3456777777777788
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH
Q 011905 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL 435 (475)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 435 (475)
++++|...+++..+.. +.+...+..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|.+.
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888887777643 2356677777777788888888888888877764 23567777788888888888888888
Q ss_pred HHHHHHcC
Q 011905 436 ARFMLKKR 443 (475)
Q Consensus 436 ~~~m~~~~ 443 (475)
++++++..
T Consensus 230 ~~~a~~~~ 237 (258)
T 3uq3_A 230 LDAARTKD 237 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhC
Confidence 88777653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-14 Score=125.05 Aligned_cols=118 Identities=8% Similarity=-0.022 Sum_probs=52.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (475)
.|++++|...++.+.... +.+...+..+...+...|++++|...+++..+.... +..++..+...|...|++++|...
T Consensus 118 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHH
Confidence 344444444444444321 112233444444444444444444444444443221 234444444455555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 364 FSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+++..+.. +.+...+..+...+...|++++|...+++..+
T Consensus 196 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 196 CNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55444432 12234444444455555555555555554443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-14 Score=122.69 Aligned_cols=197 Identities=16% Similarity=0.063 Sum_probs=97.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 011905 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTL 312 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 312 (475)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN---PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 33344444444444555555555554444421 2334444444444444555555555554444432 1133344444
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011905 313 IKGFCVE-----------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSV 381 (475)
Q Consensus 313 i~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 381 (475)
..++... |++++|...+++.++..+. +...+..+...|...|++++|+..|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 4444444 6666666666666554432 34555666666666666666666666666554 45556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
+..++...|++++|...++++.+.. +.+...+..+...+.+.|++++|++.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA---PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666666666666666666643 234556666666666666666666666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-14 Score=122.95 Aligned_cols=196 Identities=17% Similarity=0.066 Sum_probs=89.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 44444555555555555555555555554432 3334445555555555555555555555554442 123444445555
Q ss_pred HHHhc-----------CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011905 243 GICRL-----------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 243 ~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
.+.+. |++++|+..+++..+.. |.+...|..+..++...|++++|+..|++..+.. .+...+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 55554 55555555555555432 2234444455555555555555555555554443 34444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (475)
+..++...|++++|...|+...+..+. +...+..+...+...|++++|+..+++
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC-------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555555555443321 334444444555555555555554444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-13 Score=129.68 Aligned_cols=353 Identities=11% Similarity=-0.060 Sum_probs=237.6
Q ss_pred CCCChHHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----C---CccCHHhHHHH
Q 011905 70 FPSQSQMGIRFFIWAALQ-------SSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEE----G---CVVSVKMMKVI 135 (475)
Q Consensus 70 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~---~~~~~~~~~~l 135 (475)
..++.+.|+..|..+... ..-+....+|..+..++...|+++.|...++...+. . ......++...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 378889998887665321 122335668888999999999999999988876542 1 11234566655
Q ss_pred HHHHHhc--CCHHHHHHHHHhcccCCCCCCHhhHHHHHHH---HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011905 136 FNLCEKA--RLANEAMWVLRKMPEFDLRPDTIIYNNVIRL---FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 136 i~~~~~~--~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
..++... +++++|++.|++..+.. +-+...+..+..+ +...++.++|++.+++..+.. +.+..++..+...+.
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~ 220 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLH 220 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHH
Confidence 5555543 57999999999988754 2345555555554 345678889999998887654 445566666655554
Q ss_pred h----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc--
Q 011905 211 N----AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK-- 284 (475)
Q Consensus 211 ~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 284 (475)
. .++.++|.+.+++..... +.+..++..+...|.+.|++++|.+.+++..+.. +.+..++..+...|...
T Consensus 221 ~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 221 KMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---PNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp HCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHH
Confidence 4 467789999999888765 4477889999999999999999999999998853 34566676666655432
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHH
Q 011905 285 -----------------GMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG--CYS 345 (475)
Q Consensus 285 -----------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~ 345 (475)
+..++|...++...+.. +.+...+..+...+...|++++|...|++.++....+... .+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~ 375 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 23567788888777653 3355678888999999999999999999999876544321 233
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 346 SLVV-ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 346 ~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
.+.. .+...|+.++|+..|.+..+. .|+...... ..+.+.++++...+.+ +.+..+|..+...|.
T Consensus 376 ~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~---p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 376 RYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN---GADSEALHVLAFLQE 441 (472)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC---C-CTTHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 3332 245779999999999999865 455332222 2234455666666654 347789999999999
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 011905 425 RKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~~~ 443 (475)
..|++++|++.|++.++.+
T Consensus 442 ~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHCC-------------
T ss_pred HcCCHHHHHHHHHHHHhcC
Confidence 9999999999999999876
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-13 Score=122.33 Aligned_cols=254 Identities=11% Similarity=0.026 Sum_probs=153.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (475)
.+......+...|++++|+..|++..+... .+...+..+...|...|++++|.+.++++.+...........|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344455556666666666666666665432 2334566666666666666666666666665221111113335666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
+...|++++|++.+++..+.. +.+...+..+...|...|++++|...+++..+.... +...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777776666543 224456667777777777777777777776665322 345555555233344578888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC-CCC----chhhHHHHHHHHHhcCCHHHH
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFL-SSV----DSDIHSVLLLGLCRKNHSVEA 432 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A 432 (475)
.+.|+++.+.. +.+...+..+...+...|+ .++|...++++.+.... |.+ -..+|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 88887777642 2235566666666666676 77777777777764211 111 125677788888888888888
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 433 AKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 433 ~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
.+.++++++.. |.++.....+.....
T Consensus 241 ~~~~~~al~~~-p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 241 DAAWKNILALD-PTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHC----
T ss_pred HHHHHHHHhcC-ccHHHHHHHhhhhhc
Confidence 88888888876 556655555544443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-12 Score=116.81 Aligned_cols=222 Identities=11% Similarity=-0.023 Sum_probs=118.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYT 275 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 275 (475)
.++..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~ 78 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCH 78 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHHH
Confidence 344444444555555555555555544421 33444445555555 555555555555555421 344444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011905 276 SVIQIFCG----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSL 347 (475)
Q Consensus 276 ~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 347 (475)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 55555555 555555555555555443 34445555555555 555555555555555544 23444555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 348 VVELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 348 i~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~l 224 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-----NGGGCFNL 224 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----CHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-----CHHHHHHH
Confidence 555555 566666666666655543 33445555555555 666666666666666543 23455556
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcC
Q 011905 420 LLGLCR----KNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 i~~~~~----~g~~~~A~~~~~~m~~~~ 443 (475)
...|.. .+++++|.+.+++..+.+
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 666665 666666666666666655
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-13 Score=117.52 Aligned_cols=202 Identities=14% Similarity=0.034 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID---PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence 3455556666666666666666666666532 3345566666666666666666666666665543 22455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV 392 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 392 (475)
..+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.. ..+...+..+...+...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 66667777777777777666522223 34556666677777777777777777766543 22456666677777777777
Q ss_pred HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 393 LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 393 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++|...++++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 192 ~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 192 VPARQYYDLFAQGG---GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHTTS---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC---cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 77777777776643 2355666777777777777777777777777664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-13 Score=115.26 Aligned_cols=200 Identities=10% Similarity=-0.038 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..+..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444444444555555555544444322 2233444444444444455555555444444432 12344444444445
Q ss_pred Hhc-CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 245 CRL-GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 245 ~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 323 (475)
... |++++|.+.++++.+. ...+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 555 5555555555544441 0111223344444444444445555544444444332 112333444444444444444
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
+|...++.+.+.....+...+..+...+...|+.++|..+++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444444444433221123333333444444444444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-13 Score=116.28 Aligned_cols=202 Identities=10% Similarity=-0.033 Sum_probs=116.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
...|..+...+...|++++|.+.|+++.... +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455566666666666666666666665433 3345556666666666666666666666665543 2245566666666
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 244 ICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD 323 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~ 323 (475)
|...|++++|.+.++++.+. ...+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666666551 0112344555556666666666666666666655542 223455555555666666666
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 324 EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 324 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
+|...++.+.+... .+...+..+...+...|+.++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666555432 23444555555555666666666666655543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-13 Score=120.93 Aligned_cols=211 Identities=14% Similarity=0.120 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+.
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN---KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp -------------------CCTTHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3445555555666666666666666665532 3345556666666666666666666666665542 22455566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
..+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++.+.. ..+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666666654422 44556666777777777777777777766542 234566666777777777777
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011905 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+|...++++.+.. +.+..++..+...|...|++++|.+.++++++.. +.+...+..+
T Consensus 177 ~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~ 233 (243)
T 2q7f_A 177 EALSQFAAVTEQD---PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhC---cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHH
Confidence 7777777777654 2356677777777777788888888887777765 4444444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-12 Score=114.80 Aligned_cols=219 Identities=13% Similarity=0.002 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 011905 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG----KGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..++..+...|...|++++|.+.|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 5677888899999999999999999999883 356778888999999 999999999999999876 6788
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011905 309 ISTLIKGFCV----EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVR----TKRLKEAEKLFSKMLASGVKPDGLACS 380 (475)
Q Consensus 309 ~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~ 380 (475)
+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8889999999 999999999999999876 66788899999999 999999999999999875 566777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 381 VMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 381 ~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|++.+++..+.+. ...+.
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~ 222 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCF 222 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHH
Confidence 77778887 899999999999999875 45778889999999 9999999999999998862 67788
Q ss_pred HHHHHHHh----cCCHhHHhhcccc
Q 011905 453 KIVEHLKK----SGDEELITNLPKI 473 (475)
Q Consensus 453 ~l~~~~~~----~g~~~~a~~l~~~ 473 (475)
.+...|.+ .|+.++|.+.++.
T Consensus 223 ~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 223 NLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHH
Confidence 88999998 9999999877653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-13 Score=120.36 Aligned_cols=193 Identities=11% Similarity=0.009 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh----hHHHHHH
Q 011905 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII----TYVSMIK 207 (475)
Q Consensus 132 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~ 207 (475)
+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|.+.+++..... ++.. .|..+..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGK 82 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHH
Confidence 3334445555555555555555555432 1233355555555555555555555555554421 1211 2444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
.+...|++++|...|+...+... .+..++..+...|...|++++|.+.+++..+.. +.+...|..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHHHH
Confidence 55555555555555555544321 133445555555555555555555555544421 22333344333122222345
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHH
Q 011905 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGN---LDEAYQLIDKV 332 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~ 332 (475)
++|.+.|++..+.. +.+...+..+..++...|+ +++|...+++.
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 55555554444432 1123333334444444443 34444444443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.2e-14 Score=124.17 Aligned_cols=218 Identities=9% Similarity=-0.118 Sum_probs=100.7
Q ss_pred cCChhHHHHHHHHhccCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011905 177 KGDMIAADELMKGMGLIDL---YPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
.|++++|++.|+++.+... +.+..++..+...+...|++++|...|+++.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4555555555555554321 1123445555555555555555555555555543 22455555555555555555555
Q ss_pred HHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 254 LELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVV 333 (475)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 333 (475)
.+.|+++.+.. +.+..++..+...+...|++++|...++++.+.. |+.......+..+...|++++|...++...
T Consensus 97 ~~~~~~al~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELD---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55555555532 2234455555555555555555555555555432 222222223333344455555555554444
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 334 AGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 334 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
..... +...+ .++..+...++.++|.+.+.+..+. .|+ ...+..+...+...|++++|...++++.+
T Consensus 172 ~~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 172 EKSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33211 11112 2334444444445555555444322 111 23333444444444444444444444444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-12 Score=112.12 Aligned_cols=203 Identities=11% Similarity=-0.009 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD---PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 3445555555555555555555555555432 2334455555555555566666666555555432 22444555555
Q ss_pred HHHHhc-CCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011905 314 KGFCVE-GNLDEAYQLIDKVVAGGSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ 391 (475)
Q Consensus 314 ~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 391 (475)
..+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 566666 66666666666665522222 23455566666666666666666666665542 1235556666666666666
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+++|...++++.+... ..+...+..+...+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVE--VLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 6666666666665431 0244555566666666667776666666665543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-14 Score=125.44 Aligned_cols=223 Identities=11% Similarity=-0.077 Sum_probs=96.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..+..+...+...|++++|.+.|+++.... +.+..+|..+...+...|++++|...|++..+.. +.+..++..+...|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence 344444444444444444444444444332 2234444444444444555555555554444432 11344444455555
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 324 (475)
.+.|++++|.+.++++.+.. |+.......+..+...|++++|...+++..... +++...+ .++..+...++.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQT 195 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHH
T ss_pred HHhccHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHH
Confidence 55555555555555554421 222222222333334455555555554444331 1222222 23444444455555
Q ss_pred HHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011905 325 AYQLIDKVVAGGSVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLY 399 (475)
Q Consensus 325 a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 399 (475)
|...++......... +...+..+...|...|++++|...|++..+. .|+. +.....++...|++++|.+.+
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 555555544322110 1344555555666666666666666665543 2321 111233344555555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-13 Score=124.71 Aligned_cols=197 Identities=9% Similarity=0.023 Sum_probs=115.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGR-LEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
...|+.+..++.+.|++++|++.++++.... +-+...|+.+..++...|+ +++|+..|++..+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 4456666666667777777777777766543 3345666666666666675 77777777766665422 5666666666
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCC
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCV-EGN 321 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~~~ 321 (475)
++.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|+..++++.+... -+...|+.+..++.. .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 6667777777777777666643 34556666666666666666666666666665532 245555555555555 344
Q ss_pred HHHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHH
Q 011905 322 LDEA-----YQLIDKVVAGGSVSSGGCYSSLVVELVRTK--RLKEAEKLFSKM 367 (475)
Q Consensus 322 ~~~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m 367 (475)
.++| +..+++.++.... +...|+.+...+...| ++++|++.+.++
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 3444 2445444443322 3344444444444444 344555554444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-13 Score=123.49 Aligned_cols=233 Identities=11% Similarity=-0.001 Sum_probs=169.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD-MIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
+...|..+...+.+.|++++|+..|++..+.. +-+...|+.+..++...|+ +++|++.|+++.... +-+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 34566677777888888888888888887754 3466778888888888886 888888888887754 44677788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh-cC
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG-KG 285 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g 285 (475)
.++...|++++|+..|+++++... -+...|..+..++.+.|++++|+..++++.+.. +.+...|+.+..++.. .|
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcC
Confidence 888888888888888888887653 367788888888888888888888888888753 4567778888888887 56
Q ss_pred CHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---
Q 011905 286 MMKEA-----LGILDRMEALGCAPNRVTISTLIKGFCVEG--NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK--- 355 (475)
Q Consensus 286 ~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--- 355 (475)
..++| ++.+++..... +-+...|..+...+...| ++++|.+.+.++ +.+ ..+...+..+..+|.+.|
T Consensus 250 ~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 250 YNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp SCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccc
Confidence 55666 47777776653 235567777777777777 578888888777 322 234566777777777653
Q ss_pred ------CHHHHHHHHHHH-HH
Q 011905 356 ------RLKEAEKLFSKM-LA 369 (475)
Q Consensus 356 ------~~~~A~~~~~~m-~~ 369 (475)
..++|+++|+++ .+
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHH
Confidence 246777777777 43
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-13 Score=118.38 Aligned_cols=197 Identities=15% Similarity=0.115 Sum_probs=80.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
.|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+.
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 33334444444555555555555544422 2234444444455555555555555555444332 223444444444444
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN---ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcCCHHHH
Confidence 4555555555554444432 1234444444444445555555555554444421 22334444444444444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 291 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
...++++.+.. +.+..++..+..++...|++++|...++++.+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 44444444331 12233444444444444444444444444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.2e-13 Score=126.04 Aligned_cols=209 Identities=13% Similarity=0.055 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTSVIQIFCGKGM-----------------MKEALGIL 294 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~ 294 (475)
.++..+...|...|++++|.+.+++..+.. ...+....++..+...|...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 344444555555555555555555443310 0001123344555555555555 55555555
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 295 DRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-S----SGGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 295 ~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~ 364 (475)
++..+. +..+ ....+..+...+...|++++|...+++..+.... . ...++..+...|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 544321 1111 2235666667777777777777777776543111 0 1236777888888888998888888
Q ss_pred HHHHHCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 365 SKMLASGV--K---PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 365 ~~m~~~~~--~---p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
++..+... . ....++..+...+...|++++|...+++..+.... +.....++..+...|...|++++|.+++
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 87764310 0 11456777788888999999999999887764110 1112457888899999999999999999
Q ss_pred HHHHHcC
Q 011905 437 RFMLKKR 443 (475)
Q Consensus 437 ~~m~~~~ 443 (475)
++.++..
T Consensus 367 ~~al~~~ 373 (411)
T 4a1s_A 367 EQHLQLA 373 (411)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9988664
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-13 Score=127.60 Aligned_cols=299 Identities=12% Similarity=0.035 Sum_probs=166.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHH
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCA-ANLV 235 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~ 235 (475)
..+......+...|++++|...|++....+ +.+ ...+..+...+...|++++|...+++..+. +-. ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444445555555555555555554432 111 133444555555555555555555543321 111 1133
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC---CCCcHHHHHHHHHHHHhcCC--------------------HHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGD---CSPNVVTYTSVIQIFCGKGM--------------------MKEALG 292 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~--------------------~~~a~~ 292 (475)
++..+...|...|++++|...+++..+.... ......++..+...|...|+ +++|.+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4555555666666666666666555442100 00012345555666666666 666666
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHH
Q 011905 293 ILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV-S----SGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 293 ~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~ 362 (475)
.+++.... +..| ...++..+...+...|++++|...+++..+.... + ...++..+...|...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66554321 1111 1235666667777777777777777776542110 1 12357777777888888888888
Q ss_pred HHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHH
Q 011905 363 LFSKMLAS----GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 363 ~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~ 434 (475)
.+++..+. +-.+. ..++..+...+...|++++|...+++..+.... +.....++..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88776642 11111 345667777788888888888888877653110 01125567778888888888888888
Q ss_pred HHHHHHHc----CC-CCChhhHHHHHHHHHhcCCH
Q 011905 435 LARFMLKK----RI-WLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 435 ~~~~m~~~----~~-~~~~~~~~~l~~~~~~~g~~ 464 (475)
.+++.++. +. +....++..+...+...|+.
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 88887654 11 12234566677777777765
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-12 Score=125.46 Aligned_cols=335 Identities=12% Similarity=0.034 Sum_probs=211.1
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC----
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP---SIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR---- 143 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---- 143 (475)
.++.+.|.+.|.-.... +. ...+..+...+...|+. ++|.+.++...+. +...+..+...+...+
T Consensus 16 ~g~~~~A~~~~~~aa~~-g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 16 RGDTVTAQQNYQQLAEL-GY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHH-TC---CTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred CCCHHHHHHHHHHHHHC-CC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence 56777788877776544 22 22233344444445555 7888887776643 5556666666444444
Q ss_pred -CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh---HHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH--
Q 011905 144 -LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI---AADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED-- 217 (475)
Q Consensus 144 -~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~-- 217 (475)
++++|+..|++..+.|. ...+..|...|...+..+ .+.+.+......| +...+..+...|...+.+++
T Consensus 88 ~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 67788888888877553 236666777777665433 3444444444333 34556667777777775444
Q ss_pred --HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc----CCHH
Q 011905 218 --ACGLFKVMKRHGCAANLVAYSALLDGICRLG---SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK----GMMK 288 (475)
Q Consensus 218 --a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~ 288 (475)
+..+++..... ++..+..+...|.+.| +.++|++.|++..+.+ +++...+..+...|... ++++
T Consensus 162 ~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g---~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 162 DDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG---TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp HHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred HHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 44444433322 3337788888888888 8999999999998865 46666656677777554 6899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHH
Q 011905 289 EALGILDRMEALGCAPNRVTISTLIKG-F--CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-----RLKEA 360 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A 360 (475)
+|++.|++.. .| +...+..+... + ...+++++|.+.|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999998887 43 44556666655 3 46789999999999998877 5566777777776 55 89999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHH
Q 011905 361 EKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEA 432 (475)
Q Consensus 361 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 432 (475)
++.|++.. . -+...+..|-..|.. ..+.++|...|++..+.| +......+...|.. ..+.++|
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-----QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-----CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-----hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 99998876 3 355666666666655 338999999999998876 34556677777764 4589999
Q ss_pred HHHHHHHHHcC
Q 011905 433 AKLARFMLKKR 443 (475)
Q Consensus 433 ~~~~~~m~~~~ 443 (475)
..+++...+.|
T Consensus 378 ~~~~~~A~~~g 388 (452)
T 3e4b_A 378 YVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 99999999888
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-13 Score=127.11 Aligned_cols=188 Identities=14% Similarity=0.103 Sum_probs=84.7
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcCCCCCCcHHH
Q 011905 201 TYVSMIKGFCNAG---RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL----GSMERALELLGEMEKEGGDCSPNVVT 273 (475)
Q Consensus 201 ~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~ 273 (475)
.+..+...|...| +.++|++.|+...+.| .++...+..+...|... +++++|.+.|++.. .+ +...
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-----~~~a 250 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-----YPAS 250 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-----STHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-----CHHH
Confidence 4444555555555 5555555555555544 22333334444444433 45555555555544 21 2333
Q ss_pred HHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCChhhHH
Q 011905 274 YTSVIQI-F--CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG-----NLDEAYQLIDKVVAGGSVSSGGCYS 345 (475)
Q Consensus 274 ~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~ 345 (475)
+..+... + ...+++++|++.|++..+.| +...+..|-..|. .| ++++|...|+... .| +...+.
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~ 322 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADY 322 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHH
Confidence 3333333 2 23455555555555555444 3334444444443 33 5555555555544 22 233344
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 011905 346 SLVVELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 346 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 406 (475)
.|...|.. ..++++|.+.|++..+.|. | .....|-..|.. ..+.++|...++...+.|
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 44444433 2255555555555554432 1 222233333322 234555555555555544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.6e-13 Score=120.95 Aligned_cols=272 Identities=13% Similarity=0.086 Sum_probs=153.9
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHH
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCA-ANLVAYSALL 241 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll 241 (475)
...+...|++++|...|+++.... +.+ ...+..+...+...|++++|...+++..+. +-. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 334444455555555554444322 111 133444444455555555555554443321 101 1133455555
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCC---CCcHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 011905 242 DGICRLGSMERALELLGEMEKEGGDC---SPNVVTYTSVIQIFCGKGM--------------------MKEALGILDRME 298 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~ 298 (475)
..|...|++++|.+.+++..+..... .....++..+...+...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 56666666666666665544311000 0012245555566666666 666666665543
Q ss_pred Hc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 299 AL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS-----VSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 299 ~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
.. +..+ ....+..+...+...|++++|...+++..+... .....++..+...+...|++++|...+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 21 1111 133566666777777888888887777654211 1112367777888888888888888888776
Q ss_pred HCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 369 ASGV-KPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 369 ~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 440 (475)
+... ..+ ..++..+...+...|++++|...+++..+.... +.....++..+...|.+.|++++|.+.+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4210 111 456667777888889999999888887654110 11124567788888889999999999999888
Q ss_pred HcC
Q 011905 441 KKR 443 (475)
Q Consensus 441 ~~~ 443 (475)
+..
T Consensus 331 ~~~ 333 (338)
T 3ro2_A 331 EIS 333 (338)
T ss_dssp HC-
T ss_pred HHH
Confidence 653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-13 Score=125.72 Aligned_cols=271 Identities=15% Similarity=0.077 Sum_probs=200.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANL----VAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVT 273 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~ 273 (475)
.+..+...+...|++++|...|+++.+.+.. +. ..+..+...|...|++++|.+.+++..+.. ...+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556677788888888888887776322 32 467778888888888888888888776520 001234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 011905 274 YTSVIQIFCGKGMMKEALGILDRMEAL----GC-APNRVTISTLIKGFCVEGN-----------------LDEAYQLIDK 331 (475)
Q Consensus 274 ~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~ 331 (475)
+..+...|...|++++|...+++..+. +- .....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 888899999999999999999887643 11 1234577888889999999 9999999888
Q ss_pred HHhC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 332 VVAG----GS-VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEGFCLYED 401 (475)
Q Consensus 332 ~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~ 401 (475)
..+. +. .....++..+...|...|++++|.+.+++..+... .++ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 7542 11 11235788889999999999999999998875311 112 23677888899999999999999998
Q ss_pred HHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 402 IEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-----WLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 402 ~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+.... +.....++..+...+...|++++|.+++++.+.... ......+..+...+...|++++|.+.++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 8764211 001256788899999999999999999999886521 1223477889999999999999988765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.9e-13 Score=124.88 Aligned_cols=301 Identities=14% Similarity=0.005 Sum_probs=198.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHhccC----CCC-CC
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD----TIIYNNVIRLFCEKGDMIAADELMKGMGLI----DLY-PD 198 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~~ 198 (475)
....+......+...|++++|...|++..+.+. .+ ...+..+...+...|++++|...+++.... +-. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 344455555667777777777777777766431 12 245667777777777777777777765332 111 12
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CcCHHHHHHHHHHHHhcCC--------------------hHHH
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGC-----AANLVAYSALLDGICRLGS--------------------MERA 253 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----~~~~~~~~~ll~~~~~~g~--------------------~~~a 253 (475)
..++..+...+...|++++|...+++..+... .....++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 44566677777778888888877776654310 0113467777778888888 8888
Q ss_pred HHHHHHHHhcC--C-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 011905 254 LELLGEMEKEG--G-DCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGC-APN----RVTISTLIKGFCVEGNLDEA 325 (475)
Q Consensus 254 ~~~~~~~~~~~--~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~a 325 (475)
.+.+++..... . ..+....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 88887765420 0 0112244677778888888999999888887764310 111 23677788888899999999
Q ss_pred HHHHHHHHhCC----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 011905 326 YQLIDKVVAGG----SVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 326 ~~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a 395 (475)
...+++..+.. ..+ ...++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99988876431 111 145678888889999999999999988765311 111 45677788888899999999
Q ss_pred HHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHH
Q 011905 396 FCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 396 ~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~ 430 (475)
...+++..+. +.. .....++..+...+...|+..
T Consensus 327 ~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDK-SGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhcCC-cchhHHHHHHHHHHHHhhHhH
Confidence 9999987754 211 123556777777777776653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-11 Score=114.93 Aligned_cols=299 Identities=8% Similarity=-0.014 Sum_probs=199.1
Q ss_pred HHHhcCCHHHHHHHHHhcccC--CC--CCCHhhHHHHHHHH--HhcCChhHHH-----------HHHHHhccCCCCCChh
Q 011905 138 LCEKARLANEAMWVLRKMPEF--DL--RPDTIIYNNVIRLF--CEKGDMIAAD-----------ELMKGMGLIDLYPDII 200 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~--~~--~~~~~~~~~ll~~~--~~~g~~~~a~-----------~~~~~m~~~~~~~~~~ 200 (475)
.+.+.+++++|..+++++.+. .+ .++...|-.++..- .-.++.+.+. +.++.+.... .+..
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 355677788888877776542 22 22333334343321 1123333333 5555553311 1111
Q ss_pred h------HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC--
Q 011905 201 T------YVSMIKGFCNAGRLEDACGLFKVMKRH----GCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDC-- 267 (475)
Q Consensus 201 ~------~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-- 267 (475)
. +......+...|++++|...+++..+. +-.+ ...++..+...|...|++++|.+.+.+..+.....
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 1 122455677889999999999988763 1111 34678888899999999999999998876531111
Q ss_pred --CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----C
Q 011905 268 --SPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA-----G 335 (475)
Q Consensus 268 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~ 335 (475)
+....+++.+...|...|++++|++.+++..+. +..+ ...++..+..+|...|++++|...+++..+ .
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 112456788888999999999999999887643 1111 124678888899999999999999998876 3
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCC
Q 011905 336 GSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFL 408 (475)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~ 408 (475)
.......++..+...|...|++++|...+++..+. +-......+..+...+...|+ +++|..++++. +..
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~ 335 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLY 335 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCH
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCH
Confidence 31334667888999999999999999999987753 111112335666677788888 66777766665 322
Q ss_pred CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 409 SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 409 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
| .....+..+...|...|++++|.+.+++..+.
T Consensus 336 ~-~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 336 A-DLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 24567888999999999999999999998764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.3e-13 Score=120.18 Aligned_cols=205 Identities=14% Similarity=0.074 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCC
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL------GCA 303 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~ 303 (475)
.++..+...|...|++++|.+.+++..... ...+....++..+...|...|++++|...+++..+. +..
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 334444444444455555544444443310 000122334444555555555555555555544432 111
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 011905 304 P-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG------GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----- 370 (475)
Q Consensus 304 p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 370 (475)
| ....+..+...+...|++++|...+++..+. +..| ...++..+...|...|++++|.+.++++.+.
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 1 2334455555556666666666666555442 1111 2345566666666677777777766666542
Q ss_pred --CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 371 --GVKPDGL-------ACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 371 --~~~p~~~-------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
...+... .+..+...+...+.+.++...++...... +....++..+...|.+.|++++|.+++++.++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS---PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------C---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111111 11222222334455555666666665532 23567788888999999999999999988876
Q ss_pred c
Q 011905 442 K 442 (475)
Q Consensus 442 ~ 442 (475)
.
T Consensus 307 l 307 (311)
T 3nf1_A 307 S 307 (311)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-10 Score=105.89 Aligned_cols=220 Identities=11% Similarity=-0.006 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHh-cCCCCCCcHHHHHHHHHH
Q 011905 216 EDACGLFKVMKRHGCAANLVAYSALLDGIC-------RLGSM-------ERALELLGEMEK-EGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~~li~~ 280 (475)
++|..+|++..+.. +-+...|..++..+. +.|++ ++|..+|++..+ .. +.+...|..++..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~---p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL---KKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC---cccHHHHHHHHHH
Confidence 44555555555432 224445555544443 23554 566666666655 11 2234456666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPN-RV-TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV-RTKRL 357 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~ 357 (475)
+.+.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|..+|++.++.+.. +...|........ ..|++
T Consensus 109 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCH
T ss_pred HHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCH
Confidence 66666666666666666553 232 22 5566666666666666666666666654322 2333332222211 24666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 358 KEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG-FLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 358 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
++|.++|++..+.. +-+...|..++..+.+.|++++|+.+|++..+.. +.|......|..++..+.+.|+.++|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666665531 1234556666666666666666666666666642 222123456666666666666666666666
Q ss_pred HHHHHcC
Q 011905 437 RFMLKKR 443 (475)
Q Consensus 437 ~~m~~~~ 443 (475)
+++++..
T Consensus 265 ~~a~~~~ 271 (308)
T 2ond_A 265 KRRFTAF 271 (308)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6666554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=7.1e-11 Score=107.10 Aligned_cols=217 Identities=11% Similarity=0.069 Sum_probs=108.5
Q ss_pred HHHHHHHHhcccCCCCCCHhhHHHHHHHHHh-------cCCh-------hHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011905 146 NEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE-------KGDM-------IAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 146 ~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 211 (475)
++|..+|++..+.. +.+...|..++..+.. .|++ ++|..+|++....-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665532 3455566666555542 3554 5666666665542112234455566666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCcC-HH-HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH-hcCCHH
Q 011905 212 AGRLEDACGLFKVMKRHGCAAN-LV-AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC-GKGMMK 288 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~ 288 (475)
.|++++|..+|++..+. .|+ .. +|..++..+.+.|++++|.++|++..+.. +.+...|........ ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCHH
Confidence 66666666666666553 222 22 55555666666666666666666665532 122233322222111 245555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG-SVS--SGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (475)
+|..+|++..+.. +-+...+..++..+.+.|++++|..+|+..+... ..| ....|..++..+.+.|+.+.|..+++
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 187 VAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5555555554431 1234445555555555555555555555555532 222 23345555555555555555555555
Q ss_pred HHHH
Q 011905 366 KMLA 369 (475)
Q Consensus 366 ~m~~ 369 (475)
++.+
T Consensus 266 ~a~~ 269 (308)
T 2ond_A 266 RRFT 269 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.6e-12 Score=116.72 Aligned_cols=134 Identities=16% Similarity=0.114 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-Ch
Q 011905 272 VTYTSVIQIFCGKGMMKEALGILDRMEAL----GCA-PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS----VS-SG 341 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~ 341 (475)
..+..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|...+++..+... .+ ..
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 34445555555555555555555544321 100 0122455555566666666666666655543210 00 13
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLAS----GVK-PDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.++..+...|...|++++|...+++..+. +-. ....++..+...+...|++++|...+++..+.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 45566666666777777777766665532 100 11235556666677777777777777776654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.9e-12 Score=120.08 Aligned_cols=195 Identities=10% Similarity=-0.033 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011905 233 NLVAYSALLDGICRLGSM-ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
+...+..+...|...|++ ++|++.|++..+.. +.+...|..+...|...|++++|.+.|++..+. .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE---PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHH
Confidence 444455555555555555 55555555554432 223445555555555555555555555555443 234444555
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCC-
Q 011905 312 LIKGFCVE---------GNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT--------KRLKEAEKLFSKMLASGVK- 373 (475)
Q Consensus 312 li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~- 373 (475)
+...+... |++++|...+++..+.... +...|..+..+|... |++++|++.|++..+....
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 55555555 5566666666665554322 345555566666555 6666666666666654210
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 374 -PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLA 436 (475)
Q Consensus 374 -p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 436 (475)
-+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|++.+
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALD---PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 255666666666666677777777666666653 224555666666666666666666543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-11 Score=117.92 Aligned_cols=215 Identities=11% Similarity=-0.011 Sum_probs=183.2
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011905 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM-KEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 327 (475)
.++++.+.+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|..
T Consensus 83 ~~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~ 158 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHT 158 (474)
T ss_dssp HHHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3667777777776632 45788899999999999999 99999999998764 3357889999999999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------C
Q 011905 328 LIDKVVAGGSVSSGGCYSSLVVELVRT---------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--------G 390 (475)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g 390 (475)
.|+...+.. |+...+..+...|... |++++|++.|++..+.. .-+...|..+..+|... |
T Consensus 159 ~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 159 CFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccc
Confidence 999999876 5568899999999999 99999999999999763 33578888888899888 9
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
++++|...|++..+.......+...|..+..+|...|++++|.+.|+++++.. +.+...+..+..++...|+.++|.+.
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998742101478899999999999999999999999999987 67788899999999999999888754
Q ss_pred c
Q 011905 471 P 471 (475)
Q Consensus 471 ~ 471 (475)
.
T Consensus 315 ~ 315 (474)
T 4abn_A 315 K 315 (474)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=7.3e-11 Score=98.10 Aligned_cols=162 Identities=18% Similarity=0.115 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (475)
+|..+...+...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+....... +.+...+..+...
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHHHHHH
Confidence 34444444444444444444444444332 1133344444444444444444444444443321 1223333333344
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEA 360 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 360 (475)
+...++++.+...+.+..... +.+...+..+..++.+.|++++|.+.|++..+.+.. +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 444444444444444443321 112333444444444444444444444444433221 233344444444444444444
Q ss_pred HHHHHHHH
Q 011905 361 EKLFSKML 368 (475)
Q Consensus 361 ~~~~~~m~ 368 (475)
++.|++.+
T Consensus 161 ~~~~~~al 168 (184)
T 3vtx_A 161 VKYFKKAL 168 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.9e-11 Score=98.26 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=84.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+..+|..+...+.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+........ .+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 34445555555555555555555555554433 23344455555555555555555555555544332 23444444555
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNL 322 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 322 (475)
.+...++++.|.+.+.+..... +.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+..+|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN---TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 5555555555555555555432 2334455555555555555555555555555432 22344555555555555555
Q ss_pred HHHHHHHHHHHh
Q 011905 323 DEAYQLIDKVVA 334 (475)
Q Consensus 323 ~~a~~~~~~~~~ 334 (475)
++|.+.|++.++
T Consensus 158 ~~A~~~~~~al~ 169 (184)
T 3vtx_A 158 DEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.9e-11 Score=113.38 Aligned_cols=297 Identities=7% Similarity=-0.081 Sum_probs=203.2
Q ss_pred HHhcCChhHHHHHHHHhccC--CCCCC--hhhHHHHHHH--HHhcCCHHHHH-----------HHHHHHHHCCCCcC---
Q 011905 174 FCEKGDMIAADELMKGMGLI--DLYPD--IITYVSMIKG--FCNAGRLEDAC-----------GLFKVMKRHGCAAN--- 233 (475)
Q Consensus 174 ~~~~g~~~~a~~~~~~m~~~--~~~~~--~~~~~~li~~--~~~~~~~~~a~-----------~~~~~m~~~g~~~~--- 233 (475)
+.+.+++++|..+++++... .+..| ...|-.++.. ....++.+.+. +.++.+.......+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999988552 22233 3333333332 11223333444 56666544311111
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC----
Q 011905 234 -LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP---NVVTYTSVIQIFCGKGMMKEALGILDRMEALG--CA---- 303 (475)
Q Consensus 234 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~---- 303 (475)
...+......+...|++++|.+.+++..+.-...+. ...++..+...|...|++++|+..+++..+.- ..
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 111223566778899999999999999873111111 34678889999999999999999998876431 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-C
Q 011905 304 PNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGS----VS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GV-K 373 (475)
Q Consensus 304 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~ 373 (475)
....++..+...|...|++++|...+++..+... .+ ...++..+...|...|++++|.+.+++..+. +. .
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1235678888999999999999999998875311 11 1247888999999999999999999998862 22 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCh
Q 011905 374 PDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFL--SSVDSDIHSVLLLGLCRKNH---SVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~ 448 (475)
....++..+...+...|++++|...+++..+.... .+.....+..+...+...|+ +++|+.++++. ...+...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--~~~~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--MLYADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--cCHHHHH
Confidence 23567888889999999999999999988764210 01123335677888888898 77777777765 1212334
Q ss_pred hhHHHHHHHHHhcCCHhHHhhccc
Q 011905 449 PYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+..+...|...|+++.|.+..+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~ 363 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFL 363 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 567789999999999999987764
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-11 Score=111.65 Aligned_cols=240 Identities=12% Similarity=0.011 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-C
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLI-------DLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------G-C 230 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g-~ 230 (475)
.++..+...+...|++++|..+++++... ..+.....+..+...+...|++++|...+++..+. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444555555555555555555544431 11222334444555555555555555555554432 1 1
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----- 300 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 300 (475)
+....++..+...|...|++++|.+.++++.+.. ...+.....+..+...+...|++++|.+.+++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 1223445555555666666666666665554420 001123344555555666666666666666655442
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCh-------hhHHHHHHHHHhcCCHHHHHHHH
Q 011905 301 -GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG-------GSVSSG-------GCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 301 -~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 364 (475)
+..| ...++..+..+|...|++++|...++++.+. ...+.. ..+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1111 2334555566666666666666666665542 111111 11222222233334444455555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 365 SKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 365 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
....... ..+..++..+...|...|++++|.+++++..+.
T Consensus 268 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5544321 223456667777777778888888777777653
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-10 Score=107.80 Aligned_cols=233 Identities=9% Similarity=-0.021 Sum_probs=168.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-Cc----CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCC---C-CcHHHHH
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRHGC-AA----NLVAYSALLDGICRLGSMERALELLGEMEKEGGDC---S-PNVVTYT 275 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~-~~~~~~~ 275 (475)
....+...|++++|...|++..+... .+ ...++..+...|...|+++.|...+.+..+..... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456788999999999998876421 12 24577888889999999999999998876521111 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCChhhHH
Q 011905 276 SVIQIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVA-----GGSVSSGGCYS 345 (475)
Q Consensus 276 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 345 (475)
.+...|...|++++|.+.+++..+. +..+ ...++..+..+|...|++++|...+++..+ ..... ..++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHH
Confidence 8888999999999999999877642 2111 234677788889999999999999998877 44333 67788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHH
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGV---KPD-GLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSV 418 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~ 418 (475)
.+...|.+.|++++|...+++..+... .|. ...+..+-..+...++ +++|..++++ .+..+ .....+..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~-~~~~~~~~ 341 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHA-YIEACARS 341 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHH-HHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChh-HHHHHHHH
Confidence 899999999999999999999876321 122 2345555556667777 6777766665 22222 23456778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 419 LLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
+...|...|++++|.+.+++..+.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 889999999999999999988753
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.2e-09 Score=103.34 Aligned_cols=406 Identities=11% Similarity=0.007 Sum_probs=267.8
Q ss_pred CCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHhcC-CccCHHh
Q 011905 57 LDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN---PSIIIDVVEAYKEEG-CVVSVKM 131 (475)
Q Consensus 57 ~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 131 (475)
.+...+...++.+ ..+....+..+|..+... ++.+...+...+..-...++ .+.+..+|+...... .+|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 4777777787776 456677777787776653 55677778788887777777 899999999887754 2478888
Q ss_pred HHHHHHHHHhcCCH--------HHHHHHHHhccc-CCC-CC-CHhhHHHHHHHHH---------hcCChhHHHHHHHHhc
Q 011905 132 MKVIFNLCEKARLA--------NEAMWVLRKMPE-FDL-RP-DTIIYNNVIRLFC---------EKGDMIAADELMKGMG 191 (475)
Q Consensus 132 ~~~li~~~~~~~~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~ll~~~~---------~~g~~~~a~~~~~~m~ 191 (475)
|..-+....+.++. +...++|+.... .|. .+ +...|...+.... ..++++.+.++|+...
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 88887766665543 334477776554 354 34 4567777776543 2345678888998888
Q ss_pred cCCCCCChhhHHHHHHHHHhcCC-------------HHHHHHHHHHHHH--CCCC---------------c-----C---
Q 011905 192 LIDLYPDIITYVSMIKGFCNAGR-------------LEDACGLFKVMKR--HGCA---------------A-----N--- 233 (475)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~~~-------------~~~a~~~~~~m~~--~g~~---------------~-----~--- 233 (475)
......-..+|......-...+. ++.|...+.++.. .++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53211123344333222211111 2233444444322 1111 1 0
Q ss_pred HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCC
Q 011905 234 LVAYSALLDGICRLG-------SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEAL-GILDRMEALGCAPN 305 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~p~ 305 (475)
...|...+.---..+ ..+.+..+|+++... ++-....|-..+..+...|+.++|. ++|++.... ++.+
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~---~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s 377 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH---VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS 377 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC
Confidence 234555554333222 123456778888774 3456778888888888889999997 999998865 4556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCCC------------hhhHHHHHHHHHhcCCHHHHHHHH
Q 011905 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------SVSS------------GGCYSSLVVELVRTKRLKEAEKLF 364 (475)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~A~~~~ 364 (475)
...+...+...-+.|++++|.++|+.++... ..|+ ..+|...+....+.|..+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6667778888889999999999999987631 0131 236777788888889999999999
Q ss_pred HHHHHC-CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 365 SKMLAS-GVKPDGLACSVMIRELCL-GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 365 ~~m~~~-~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+..+. + .+....|......-.+ .++.+.|..+|+...+.- | .+...|...+......|+.+.|..+|+..+..
T Consensus 458 ~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p-~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 458 GKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--A-TDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--C-CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999876 2 1222333322222223 356899999999998862 2 35677788888888899999999999999887
Q ss_pred CCC--CChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 443 RIW--LQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 443 ~~~--~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+ -....|...++.-.+.|+.+.+.++.+
T Consensus 534 ~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 534 ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 632 244678888888899999998887764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.37 E-value=7e-10 Score=103.49 Aligned_cols=298 Identities=11% Similarity=0.033 Sum_probs=187.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCCCCCH----hhHHHHHHHHHhcCChhHHHHHHHHhccCCC-CCC----hhhHHHHH
Q 011905 136 FNLCEKARLANEAMWVLRKMPEFDLRPDT----IIYNNVIRLFCEKGDMIAADELMKGMGLIDL-YPD----IITYVSMI 206 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~----~~~~~~li 206 (475)
...+...|++++|...+++........+. ..++.+...+...|+++.|.+.+++...... ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34556678888888888776654322222 2455666777778888888888877654210 111 12355666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCC--c-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHH
Q 011905 207 KGFCNAGRLEDACGLFKVMKRH----GCA--A-NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSV 277 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 277 (475)
..+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++.........+ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 7778888888888888876642 221 2 2345666778888889999999988887763221111 23456777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHH
Q 011905 278 IQIFCGKGMMKEALGILDRMEALGCAPN--RVTIS----TLIKGFCVEGNLDEAYQLIDKVVAGGSVSS---GGCYSSLV 348 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li 348 (475)
...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7888888999999998888764311111 11111 233446788999999998888765443211 22456777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 349 VELVRTKRLKEAEKLFSKMLAS----GVKPDG-LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
..+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++...... .. ..+..+
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~----~~----g~~~~~ 332 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN----RT----GFISHF 332 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----HH----CCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc----cc----cHHHHH
Confidence 8888889999999888877542 222222 2455566677888999999988888776421 00 111223
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011905 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
...| +....+++.+....
T Consensus 333 ~~~g--~~~~~ll~~~~~~~ 350 (373)
T 1hz4_A 333 VIEG--EAMAQQLRQLIQLN 350 (373)
T ss_dssp HTTH--HHHHHHHHHHHHTT
T ss_pred HHcc--HHHHHHHHHHHhCC
Confidence 3444 55666666666655
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.8e-10 Score=104.04 Aligned_cols=298 Identities=12% Similarity=-0.005 Sum_probs=204.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcC----HHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDII----TYVSMIKGFCNAGRLEDACGLFKVMKRHGC-AAN----LVAY 237 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~~~ 237 (475)
+......+...|++++|...+++........+.. +++.+...+...|++++|...+++..+... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3445556778999999999999987644222222 456677788899999999999998765311 112 2345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcC--CCCC--C-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C--CHHH
Q 011905 238 SALLDGICRLGSMERALELLGEMEKEG--GDCS--P-NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCA--P--NRVT 308 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p--~~~~ 308 (475)
..+...+...|++++|...+++..... .+.+ | ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 677888999999999999999876531 1111 2 3455677888899999999999999988754221 1 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-GCYS-----SLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLAC 379 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~ 379 (475)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......+. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 778888899999999999999988653211111 1122 233457799999999999998875432211 2345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC----CCh
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFL---SSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIW----LQG 448 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~----~~~ 448 (475)
..+...+...|++++|...+++..+.... +.....++..+..++...|+.++|.+.+++.... |.. ...
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~~~~g 336 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 336 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccHHHHHHHcc
Confidence 66778889999999999999988654211 1011236677788888999999999999888754 221 111
Q ss_pred hhHHHHHHHHHhcCCH
Q 011905 449 PYVDKIVEHLKKSGDE 464 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~ 464 (475)
.....++..+...+..
T Consensus 337 ~~~~~ll~~~~~~~~~ 352 (373)
T 1hz4_A 337 EAMAQQLRQLIQLNTL 352 (373)
T ss_dssp HHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCC
Confidence 2345566666666664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-10 Score=94.42 Aligned_cols=162 Identities=12% Similarity=0.039 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
.+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444445555566666666666555432 2344555555555555556665555555554432 233444555555555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554432 2244445555555555555555555555554432 23344444455555555555555
Q ss_pred HHHHHHHH
Q 011905 291 LGILDRME 298 (475)
Q Consensus 291 ~~~~~~m~ 298 (475)
.+.+++..
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=4e-10 Score=105.41 Aligned_cols=231 Identities=10% Similarity=-0.071 Sum_probs=170.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCCC---CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-CHHH
Q 011905 238 SALLDGICRLGSMERALELLGEMEKEGGDCS---PNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GC-AP-NRVT 308 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p-~~~~ 308 (475)
......+...|++++|...|++..+...... ....++..+...|...|++++|...+++..+. +. .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445567789999999999999876321111 13457788899999999999999999887642 11 11 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAG----GSV-SSGGCYSSLVVELVRTKRLKEAEKLFSKMLA-----SGVKPDGLA 378 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 378 (475)
++.+..+|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|.+.+++..+ .. .....+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHH
Confidence 788889999999999999999988753 111 1235688899999999999999999999886 42 222567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CCchhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcCC-CCChhhHH
Q 011905 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLS--SVDSDIHSVLLLGLCRKNH---SVEAAKLARFMLKKRI-WLQGPYVD 452 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~-~~~~~~~~ 452 (475)
+..+...+.+.|++++|...+++..+..... +.....+..+...+...|+ +++|+.++++ .+. +.....+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHH
Confidence 8888889999999999999999998753221 1123445666666667788 7777777776 222 23334667
Q ss_pred HHHHHHHhcCCHhHHhhccc
Q 011905 453 KIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 453 ~l~~~~~~~g~~~~a~~l~~ 472 (475)
.+...|.+.|+++.|.+..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~ 360 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYR 360 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHH
Confidence 89999999999999987664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-08 Score=98.57 Aligned_cols=377 Identities=9% Similarity=-0.005 Sum_probs=248.2
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-cCC-cc-CHHhHHHHHHHHH--
Q 011905 74 SQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNP--------SIIIDVVEAYKE-EGC-VV-SVKMMKVIFNLCE-- 140 (475)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~li~~~~-- 140 (475)
.+.+..+|..........|+...+...+....+.++. +.+.++|+.... .|. .+ +...|...+....
T Consensus 119 ~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~ 198 (679)
T 4e6h_A 119 AAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHW 198 (679)
T ss_dssp HHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhc
Confidence 7777788877765432347888888888877665553 344567776543 455 34 5678887777544
Q ss_pred -------hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCC-------------hhHHHHHHHHhcc--CCC---
Q 011905 141 -------KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGD-------------MIAADELMKGMGL--IDL--- 195 (475)
Q Consensus 141 -------~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-------------~~~a~~~~~~m~~--~~~--- 195 (475)
..++++.+..+|+.........-..+|......--..+. ++.|...+.++.. .++
T Consensus 199 ~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 199 KPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred cccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 234578899999999863222123344333222111111 2233344433211 011
Q ss_pred -C-----------C--C------hhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011905 196 -Y-----------P--D------IITYVSMIKGFCNAG-------RLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 196 -~-----------~--~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
+ | + ...|...+..--..+ ..+.+..+|++.... ++-+...|-..+..+.+.|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcC
Confidence 1 1 0 123444444332222 133456788888775 3447888888888888999
Q ss_pred ChHHHH-HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCCC------------H
Q 011905 249 SMERAL-ELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALG---------CAPN------------R 306 (475)
Q Consensus 249 ~~~~a~-~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~------------~ 306 (475)
+.++|. ++|++.... +|.+...|-..+...-+.|++++|.++|+.+.+.. -.|+ .
T Consensus 358 ~~~~a~r~il~rAi~~---~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQC---IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp CCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 999997 999999874 35667778888888899999999999999987641 0132 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT-KRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 385 (475)
..|...++...+.|+.+.|..+|....+.-.......|...+..-.+. ++.+.|.++|+..++. ..-+...+...+..
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHH
Confidence 367778888888899999999999998861111233343333323333 4589999999999876 23355666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011905 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
....|+.+.|+.+|+........+......|...+..-.+.|+.+.+.++.+++.+.- |+......+..-
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~r 583 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNK 583 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHH
Confidence 7888999999999999988653222355788888888889999999999999999885 443444444433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-10 Score=93.14 Aligned_cols=164 Identities=13% Similarity=0.088 Sum_probs=107.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 011905 165 IIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGI 244 (475)
Q Consensus 165 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 244 (475)
..|..+...+...|++++|.+.++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 455666777777777777777777776543 3456666777777777777777777777776653 23566666677777
Q ss_pred HhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 245 CRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 245 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 324 (475)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN---PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC---cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 77777777777777766642 3455566666666667777777777776666543 2345556666666666666666
Q ss_pred HHHHHHHHHh
Q 011905 325 AYQLIDKVVA 334 (475)
Q Consensus 325 a~~~~~~~~~ 334 (475)
|...++...+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.7e-10 Score=94.76 Aligned_cols=208 Identities=9% Similarity=-0.106 Sum_probs=157.7
Q ss_pred cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 011905 232 ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIST 311 (475)
Q Consensus 232 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 311 (475)
.|+..+......+.+.|++++|.+.|++..+.. .+++...+..+..++...|++++|++.+++..+.. +.+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHH
Confidence 467888889999999999999999999998853 12677777778999999999999999999998764 235677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKVVAGGSVSSG-------GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD---GLACSV 381 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ 381 (475)
+..++...|++++|...+++..+.... +. ..|..+...+...|++++|++.|++..+. .|+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 999999999999999999999886543 33 45788888899999999999999999865 565 355666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
+...+... +..+++++...+. .+...|.... ....+.+++|+..+++.++.. |.+..+...+..
T Consensus 159 l~~~~~~~-----~~~~~~~a~~~~~---~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 159 LGVLFYNN-----GADVLRKATPLAS---SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHHHGGGTT---TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHhccc---CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 66666543 3445566655542 2344444443 334577899999999999887 555555554433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-10 Score=104.13 Aligned_cols=208 Identities=13% Similarity=0.053 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEG-----GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL------G- 301 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~- 301 (475)
..++..+...|...|++++|...++++.+.. ...+....++..+...|...|++++|.+.+++.... .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 3445555555555566666655555554320 001123345555555666666666666666555432 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 011905 302 CAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG------GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS---- 370 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 370 (475)
.+.....+..+...+...|++++|...+++..+. +..| ...++..+...|...|++++|...+++..+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1122445556666666667777766666666543 1111 2455666777777777777777777776642
Q ss_pred ---CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 371 ---GVKPDGL-ACSVMIRELCLGGQVLEGFCLYEDIE----KIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 371 ---~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
...+... .+..+.......+....+.. +..+. ..+..++....++..+...|...|++++|.+++++.++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122222 22222222222222222221 11111 111111224567888888889999999999999887754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.3e-10 Score=112.22 Aligned_cols=164 Identities=14% Similarity=0.084 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011905 271 VVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVE 350 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 350 (475)
..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|...|++.++.+.. +..+|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4445555555555555555555555554432 113444555555555555555555555555544322 34455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHH
Q 011905 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 430 (475)
|...|++++|++.|++.++.. .-+...+..+..+|...|++++|++.|++..+.. +.+...|..+..+|...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccHH
Confidence 666666666666666555432 1134555555556666666666666666665543 224555666666666666666
Q ss_pred HHHHHHHHHH
Q 011905 431 EAAKLARFML 440 (475)
Q Consensus 431 ~A~~~~~~m~ 440 (475)
+|.+.+++++
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-10 Score=114.11 Aligned_cols=166 Identities=13% Similarity=0.003 Sum_probs=126.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHH
Q 011905 128 SVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIK 207 (475)
Q Consensus 128 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 207 (475)
+..+|+.+...+.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45677778888888888888888888877653 2356778888888888888888888888877654 345677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011905 208 GFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 208 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
++...|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..++...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHhhhhhHHHhcccH
Confidence 8888888888888888877764 2357778888888888888888888888887743 34567777888888888888
Q ss_pred HHHHHHHHHHHH
Q 011905 288 KEALGILDRMEA 299 (475)
Q Consensus 288 ~~a~~~~~~m~~ 299 (475)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888777776643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=103.98 Aligned_cols=137 Identities=12% Similarity=0.048 Sum_probs=75.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccC------C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLI------D-LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH------G 229 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~------~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g 229 (475)
...++..+...+...|++++|...+++.... + .+....++..+...+...|++++|...+++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3445556666666666666666666555432 1 0122345555666666666666666666655443 1
Q ss_pred -CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 230 -CAANLVAYSALLDGICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 230 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.+....++..+...|...|++++|.+.+++..+. +...+....++..+...|...|++++|...+++..+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1223445666666666667777776666666552 000112344555666666666666666666665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-09 Score=91.97 Aligned_cols=197 Identities=12% Similarity=0.041 Sum_probs=130.9
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|++.+++..... +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34566666777777788888888888877765533566666667777888888888888888777654 33556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCH-------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHH
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANL-------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSV 277 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l 277 (475)
..+...|++++|...+++..+... .+. ..|..+...+.+.|++++|++.|++..+.. +. +...|..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHH
Confidence 888888888888888887777532 233 456677777788888888888888887742 22 34566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011905 278 IQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 336 (475)
..+|...| ..+++.+...+ ..+...|.... ....+.+++|...+++..+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 66665443 33344444432 22333443333 233456788888888887754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.5e-09 Score=90.83 Aligned_cols=91 Identities=10% Similarity=-0.137 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCC--
Q 011905 380 SVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK----------NHSVEAAKLARFMLKKRIWLQ-- 447 (475)
Q Consensus 380 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~~~-- 447 (475)
..+...|...|++++|...|+++.+.....+.....+..+..+|... |++++|.+.++++++.. |.+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~ 230 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDSPL 230 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTCTH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCChH
Confidence 34445566667777777777766665322111334555666666544 67777777777777664 222
Q ss_pred -hhhHHHHHHHHHhcCCHhHHhhcc
Q 011905 448 -GPYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 448 -~~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
......+...+.+.|+.+.+..+.
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~~~~ 255 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDASLA 255 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 233445555566666665555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.11 E-value=6.2e-08 Score=85.58 Aligned_cols=179 Identities=7% Similarity=0.008 Sum_probs=85.9
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011905 183 ADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC-AANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 183 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..|. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555433 34444444555556666666666666665544432 1244555555666666666666666666665
Q ss_pred hcCCCCCC-----cHHHHHHHHHHH--Hh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 262 KEGGDCSP-----NVVTYTSVIQIF--CG--KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 262 ~~~~~~~~-----~~~~~~~li~~~--~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 332 (475)
+. .| +..+...+..++ .. .++..+|+.+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 164 ~~----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NA----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HH----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hc----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 52 23 123333333331 11 22566666666665443 233222233333555556666666665544
Q ss_pred HhCC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 333 VAGG---------SVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 333 ~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
.+.. -+-+..+...+|......|+ +|.+++.++.+.
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3321 01133444333333334444 555555555543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=2.9e-08 Score=87.64 Aligned_cols=245 Identities=9% Similarity=0.025 Sum_probs=148.7
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
+-.--.|++..++.-...+... .......-+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3334468888888755554331 2223334455777777776642 11133333333333333 222
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
|+..|++..+.+ .++..++..+..++...|++++|++++.+....+. ..-+...+...+..+.+.|+.+.|.+.++.
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667777766654 44555666777888888888888888888766431 013566777778888888888888888888
Q ss_pred HHHcCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 297 MEALGCAP-----NRVTISTLIKGFC--VEG--NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 297 m~~~~~~p-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
|.+. .| +..+...++.++. ..| ++.+|..+|+++.+.. |+...-..++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8765 44 3455556665532 233 7888888888876653 33222334444777888888888888765
Q ss_pred HHC-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 368 LAS-----GV----KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 368 ~~~-----~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
.+. +. .-|..++..+|......|+ +|.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 532 10 2244555455555555565 7777888887754
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-08 Score=79.18 Aligned_cols=126 Identities=13% Similarity=0.172 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 011905 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL 247 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 247 (475)
..+...+...|++++|.++++++...+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 333444444444444444444443322 2233333444444444444444444444444332 11333344444444444
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus 83 ~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444444321 1223334444444444444444444444433
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-08 Score=90.20 Aligned_cols=100 Identities=9% Similarity=-0.066 Sum_probs=53.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcCHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD---IITYVSMIKGFCNAGRLEDACGLFKVMKRHGC--AANLVAY 237 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~ 237 (475)
+...+-.+...+.+.|++++|...|+++.... +.+ ...+..+..++.+.|++++|...|+...+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44455555556666666666666666665532 112 34455555566666666666666666555421 1113344
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHhc
Q 011905 238 SALLDGICR--------LGSMERALELLGEMEKE 263 (475)
Q Consensus 238 ~~ll~~~~~--------~g~~~~a~~~~~~~~~~ 263 (475)
..+..++.+ .|++++|...|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 455555555 56666666666655553
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-08 Score=91.03 Aligned_cols=90 Identities=11% Similarity=-0.021 Sum_probs=42.5
Q ss_pred HHHhcCChhHHHHHHHHhccC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---Cc--CHHHHHHHHH
Q 011905 173 LFCEKGDMIAADELMKGMGLI----DLYPD-IITYVSMIKGFCNAGRLEDACGLFKVMKRHGC---AA--NLVAYSALLD 242 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~~--~~~~~~~ll~ 242 (475)
.|...|++++|.+.|++.... |-+++ ..+|+.+..+|.+.|++++|+..+++..+... .+ -..+++.+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666555331 11111 33455555555555666665555555443210 00 0224444445
Q ss_pred HHHhc-CChHHHHHHHHHHHh
Q 011905 243 GICRL-GSMERALELLGEMEK 262 (475)
Q Consensus 243 ~~~~~-g~~~~a~~~~~~~~~ 262 (475)
.|... |++++|+..|++..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHH
Confidence 55553 555555555554443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-08 Score=90.69 Aligned_cols=175 Identities=10% Similarity=-0.036 Sum_probs=97.5
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHHHHHhcCChHHH
Q 011905 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH----GCAAN-LVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~g~~~~a 253 (475)
++++|...|++. ...|...|++++|...|++..+. |-.++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777776665 33556677777777777766542 21111 45677777777777777777
Q ss_pred HHHHHHHHhcCCCC-CC--cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 011905 254 LELLGEMEKEGGDC-SP--NVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAP-N----RVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 254 ~~~~~~~~~~~~~~-~~--~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~~~~~~ 324 (475)
+..+++..+..... .+ -..+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 77777665521000 00 123555666666664 66666666666654321000 0 2345555556666666666
Q ss_pred HHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 325 AYQLIDKVVAGGSVSSG------GCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 325 a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
|...|++..+....... ..|..+..++...|++++|...|++..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666554332211 134445555556666666666666555
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-08 Score=77.24 Aligned_cols=128 Identities=13% Similarity=0.225 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.... +.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---CCchHHHHHHHHHH
Confidence 4445555555666666666666555543 2244555555555555666666666666555432 23344455555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555555432 12334444444555555555555555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.97 E-value=9.6e-07 Score=84.98 Aligned_cols=354 Identities=10% Similarity=-0.028 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCC-HHHHHHHHHhcccC-CC-CCCHhhHHHH
Q 011905 94 SFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL-ANEAMWVLRKMPEF-DL-RPDTIIYNNV 170 (475)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~-~~-~~~~~~~~~l 170 (475)
...|..++..+-. ++.+.+..+|+..... .|+...|...+....+.+. .+....+|+..... |. +.+...|...
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 3444444444433 5666666676666553 3566666666665555442 23444555554432 32 2345556555
Q ss_pred HHHHH----hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHCCCCcC
Q 011905 171 IRLFC----EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC-------------NAGRLEDACGLFKVMKRHGCAAN 233 (475)
Q Consensus 171 l~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-------------~~~~~~~a~~~~~~m~~~g~~~~ 233 (475)
+..+. ..++.+.+.++|++........-...|......-. ..+.+..|..+++.+...--..+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 55433 23456666667766664211101112221111100 01122333444443332100013
Q ss_pred HHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 011905 234 LVAYSALLDGICRLG--S-----MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR 306 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 306 (475)
...|...+.--...+ - .+.+..+|+++.... +.+...|-..+..+.+.|+.++|..++++.... |..
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~---p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~ 245 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF---YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDG 245 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCS
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCc
Confidence 345555444322211 1 345667888877642 455677777777788888888888888888876 333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGG---------SVS---SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP 374 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 374 (475)
..+.. .|....+.++. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|++. +.. ..
T Consensus 246 ~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~ 317 (493)
T 2uy1_A 246 MFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GV 317 (493)
T ss_dssp SHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CC
T ss_pred HHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CC
Confidence 22211 22222111221 22222110 001 1244666666666777888899999888 321 22
Q ss_pred CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011905 375 DGLACSVMIREL-CLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 375 ~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
+...|......- ...++.+.|+.+|+...+.. | .+...+...++...+.|+.+.|..+|+.+ ......|..
T Consensus 318 ~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~-~~~~~~~~yid~e~~~~~~~~aR~l~er~-----~k~~~lw~~ 389 (493)
T 2uy1_A 318 GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--P-DSTLLKEEFFLFLLRIGDEENARALFKRL-----EKTSRMWDS 389 (493)
T ss_dssp CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHS-----CCBHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHHHHHH
Confidence 333443221111 22346888999998888753 2 23455666777777888888888888886 235677778
Q ss_pred HHHHHHhcCCHhHHhhccc
Q 011905 454 IVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 454 l~~~~~~~g~~~~a~~l~~ 472 (475)
.+..-...|+.+.+..+++
T Consensus 390 ~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 390 MIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 7777777888888776553
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.1e-08 Score=81.63 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=76.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 011905 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVE 319 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 319 (475)
+..+|.+.|++++|...|++..+.. |.+...+..+..++...|++++|+..|++..+.. +.+...+..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 6667777777777777777776643 3456667777777777777777777777776653 22455566666555444
Q ss_pred CC--HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011905 320 GN--LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 320 ~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 378 (475)
|+ .+.+...++.... ..|....+.....++...|++++|...|++.++. .|+...
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 33 2334444444332 1222223333444555667777777777777643 566443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-07 Score=79.51 Aligned_cols=160 Identities=12% Similarity=0.014 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEG----NLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
.+..+...|...+++++|++.|++..+.| +...+..|-..|.. + ++++|.+.|+...+.+ +...+..|.
T Consensus 20 a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 20 AQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 33334444444444444444444444332 22333333333333 3 4444444444444433 223344444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 349 VELVR----TKRLKEAEKLFSKMLASGVK-PDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 349 ~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
..|.. .+++++|++.|++..+.|.. .+...+..|-..|.. .++.++|...|++..+.+- +...+..+
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~----~~~a~~~L 168 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSR----TGYAEYWA 168 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSC----TTHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC----CHHHHHHH
Confidence 44443 44555555555555543211 013444444444444 4556666666666555411 22344445
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 011905 420 LLGLCRK-N-----HSVEAAKLARFMLKKR 443 (475)
Q Consensus 420 i~~~~~~-g-----~~~~A~~~~~~m~~~~ 443 (475)
...|... | ++++|.++|++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 5554432 2 5666666666666555
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.4e-07 Score=80.90 Aligned_cols=192 Identities=11% Similarity=-0.033 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHH
Q 011905 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR--VTIS 310 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~ 310 (475)
+...+..+...+.+.|++++|...|+++.+.....+.....+..+..+|.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566667788889999999999999988753211122456777888999999999999999998875322111 2344
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011905 311 TLIKGFCV------------------EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV 372 (475)
Q Consensus 311 ~li~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 372 (475)
.+..++.. .|++++|...|+++++..+. +...+.+.... + .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----~------~~~~~~~---- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----V------FLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----H------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----H------HHHHHHH----
Confidence 44444443 34455555555555544321 11111111000 0 0000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.....+...+.+.|++++|...|+++.+.....+.....+..+..++.+.|++++|.+.++.+...+
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0112344567788999999999999888642211123567888888889999999999998887765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.1e-08 Score=81.64 Aligned_cols=126 Identities=10% Similarity=0.024 Sum_probs=78.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
+..++.+.|++++|...|++..+.. +-+...+..+...|...|++++|...|++..+.. |.+..+|..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHH
Confidence 6677777788888888877777764 2366777777777888888888888888777743 34566677776666554
Q ss_pred CC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011905 285 GM--MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGG 336 (475)
Q Consensus 285 g~--~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 336 (475)
|+ .+.+...++.... ..|....+...-.++...|++++|...|++.++..
T Consensus 136 ~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 43 3334444444321 12222233334445556677888888888877644
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=7.9e-09 Score=82.47 Aligned_cols=143 Identities=10% Similarity=-0.026 Sum_probs=102.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011905 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE 394 (475)
Q Consensus 315 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 394 (475)
.+...|++++|...+......... +...+..+...|.+.|++++|++.|++.++.. +-+...|..+...+...|++++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 344556777777777776553221 23456667788888888888888888887653 2356777778888888888888
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKL-ARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
|...|++..+.. +.+..+|..+...|.+.|++++|.+. ++++++.. |-++.++....+.+...|+
T Consensus 84 A~~~~~~al~~~---p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELN---PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888888888764 23677788888888888888766654 57777776 6677777777777777664
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-07 Score=79.38 Aligned_cols=202 Identities=12% Similarity=-0.012 Sum_probs=100.2
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-cCH-HHHHH
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-P-DIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCA-ANL-VAYSA 239 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~-~~~~~ 239 (475)
...+..+...+.+.|++++|...|+++...... | ....+..+..++.+.|++++|+..|+++.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344455556666667777777777766553211 1 1234555666666667777777777666654321 111 12333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh
Q 011905 240 LLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNR-VTISTLIKGFCV 318 (475)
Q Consensus 240 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~ 318 (475)
+..++.+.|.. .+. .|..+...+...|++++|+..|+++.+.. |+. .........
T Consensus 84 ~g~~~~~~~~~-----~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l--- 139 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ--------------GFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL--- 139 (225)
T ss_dssp HHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH---
T ss_pred HHHHHHhhhhh-----hhh--------------hhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH---
Confidence 33333332110 000 01111222234567777777777776542 322 111111100
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 011905 319 EGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLE 394 (475)
Q Consensus 319 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~ 394 (475)
..+...+. .....+...|.+.|++++|+..|+++++. .|+. ..+..+..++.+.|+.++
T Consensus 140 -------~~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~ 202 (225)
T 2yhc_A 140 -------VFLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQ 202 (225)
T ss_dssp -------HHHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------HHHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHH
Confidence 00000000 01223556677777777777777777754 3332 356666777777777777
Q ss_pred HHHHHHHHHHcC
Q 011905 395 GFCLYEDIEKIG 406 (475)
Q Consensus 395 a~~~~~~~~~~~ 406 (475)
|.+.++.+...+
T Consensus 203 A~~~~~~l~~~~ 214 (225)
T 2yhc_A 203 AEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHhhC
Confidence 777777777654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.2e-07 Score=78.79 Aligned_cols=176 Identities=11% Similarity=0.041 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC----CHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG----MMKEALG 292 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~ 292 (475)
+|++.|++..+.| +...+..+...|...+++++|.+.|++..+.+ +...+..+...|.. + ++++|++
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 3555666666654 55666666666777777777777777776632 44555556666665 5 6777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHHHHHHH
Q 011905 293 ILDRMEALGCAPNRVTISTLIKGFCV----EGNLDEAYQLIDKVVAGGSV-SSGGCYSSLVVELVR----TKRLKEAEKL 363 (475)
Q Consensus 293 ~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 363 (475)
+|++..+.| +...+..|-..|.. .+++++|...|++..+.+.. .....+..|...|.. .+++++|+..
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 777776654 45556666666655 66777777777777766532 014556667777776 6778888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 011905 364 FSKMLASGVKPDGLACSVMIRELCLG-G-----QVLEGFCLYEDIEKIG 406 (475)
Q Consensus 364 ~~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~~~~ 406 (475)
|++..+. ..+...+..|-..|... | +.++|...++...+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8887765 22334555555555443 2 7888888888887776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.91 E-value=5e-08 Score=98.29 Aligned_cols=174 Identities=9% Similarity=-0.029 Sum_probs=123.9
Q ss_pred HhcCChhHHHHHHHHhc--------cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011905 175 CEKGDMIAADELMKGMG--------LIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
...|++++|++.+++.. ... +.+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888776 322 4455677777788888888888888888877754 2366777888888888
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 326 (475)
.|++++|.+.|++..+.. +.+...|..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888887753 3456677778888888888888 88888877653 235667777888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011905 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
..|++..+.+.. +...+..+..++...++
T Consensus 555 ~~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 888877665432 34556666666655444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.7e-06 Score=77.07 Aligned_cols=232 Identities=10% Similarity=-0.013 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----Hhc---CC
Q 011905 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----CGK---GM 286 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~ 286 (475)
++|+++++.++..... +..+|+.--..+...| ++++++++++.+.... +-+..+|+.--..+ ... ++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---cccHHHHHHHHHHHHHHHHhccccCC
Confidence 4555555555554311 3344454444455555 5666666666655532 23334444333333 333 45
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC------HH
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLD--EAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR------LK 358 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~ 358 (475)
+++++++++.+.+.. +-+...|+.-.-.+.+.|.++ ++++.++.+++.++. |..+|+.-...+...++ ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 666666666665543 224555555444555555555 666666666665543 44445544444444454 67
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 359 EAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL-EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLAR 437 (475)
Q Consensus 359 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 437 (475)
++++.+++++... .-|...|+.+-..+.+.|+.. .+..+.+++.+.+-....+...+..+.+.|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 7777777777653 235566666666666666533 34445555544320011256677777788888888888888888
Q ss_pred HHHHcCCCCChhhHHHH
Q 011905 438 FMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 438 ~m~~~~~~~~~~~~~~l 454 (475)
.+.+.--|.....|+..
T Consensus 283 ~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHTTCGGGHHHHHHH
T ss_pred HHHhccChHHHHHHHHH
Confidence 87763225555555543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-06 Score=77.25 Aligned_cols=220 Identities=10% Similarity=-0.007 Sum_probs=125.3
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC--CHHHHHHHHHhcccCCCCCCHhhHHHHHHHH----Hhc---C
Q 011905 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR--LANEAMWVLRKMPEFDLRPDTIIYNNVIRLF----CEK---G 178 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~---g 178 (475)
...++|+++.+.+...+ +-+..+|+.--..+...+ +++++++.++.+.... +-+..+|+.--..+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 34456677777666654 445556666555666666 7777777777776644 23445555544444 333 5
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC------h
Q 011905 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE--DACGLFKVMKRHGCAANLVAYSALLDGICRLGS------M 250 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~------~ 250 (475)
++++++++++++.+.. +.+-.+|+.-.-.+.+.|.++ ++++.++.+.+.... |...|+.-...+.+.|+ +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 6667777777666544 445566665555555566655 666666666665433 55566555555555554 6
Q ss_pred HHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011905 251 ERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE-ALGILDRMEALG--CAPNRVTISTLIKGFCVEGNLDEAYQ 327 (475)
Q Consensus 251 ~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~ 327 (475)
+++++.++++.... +-|...|+..-..+.+.|+... +..+..++.+.+ -..+...+..+..+|.+.|+.++|.+
T Consensus 203 ~eEl~~~~~aI~~~---p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIVKC---PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhC---CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 66666666666543 3556666666666666555333 333444433221 12244555555566666666666666
Q ss_pred HHHHHHh
Q 011905 328 LIDKVVA 334 (475)
Q Consensus 328 ~~~~~~~ 334 (475)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=6.5e-08 Score=86.40 Aligned_cols=167 Identities=11% Similarity=-0.030 Sum_probs=108.7
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHH-
Q 011905 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSM- 205 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l- 205 (475)
.+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...++++... .|+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 344555566667777788888888888776643 235667777777777888888888888777654 3443322222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011905 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
...+...++.++|...+++..+.. +.+...+..+...|...|++++|...|.++.+...+ ..+...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~-~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT-AADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-GGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc-cccchHHHHHHHHHHHcC
Confidence 223555666667777777776654 335667777777777777777777777777764310 112556777777777777
Q ss_pred CHHHHHHHHHHHH
Q 011905 286 MMKEALGILDRME 298 (475)
Q Consensus 286 ~~~~a~~~~~~m~ 298 (475)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 7777777766543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.88 E-value=4.1e-08 Score=80.68 Aligned_cols=161 Identities=14% Similarity=0.020 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHH-HH
Q 011905 132 MKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG-FC 210 (475)
Q Consensus 132 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~~ 210 (475)
+......+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++..... |+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 3344455666666666666666665532 2345566666666666666666666666665432 233222221111 11
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
..++..+|...+++..+.. +-+...+..+...+...|++++|...|+++.+... -..+...+..+...+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNL-GAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-ccChHHHHHHHHHHHHHhCCCCcH
Confidence 1112223455555555432 11345555555555555555655555555555310 001133455555555555555555
Q ss_pred HHHHHHH
Q 011905 291 LGILDRM 297 (475)
Q Consensus 291 ~~~~~~m 297 (475)
...|++.
T Consensus 164 ~~~y~~a 170 (176)
T 2r5s_A 164 ASKYRRQ 170 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-07 Score=93.98 Aligned_cols=173 Identities=10% Similarity=-0.054 Sum_probs=142.9
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Q 011905 210 CNAGRLEDACGLFKVMK--------RHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF 281 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 281 (475)
...|++++|++.+++.. +.. +.+...+..+...|.+.|++++|++.|+++.+.. +.+...|..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHH
Confidence 78899999999999988 432 3466788889999999999999999999998853 45778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011905 282 CGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAE 361 (475)
Q Consensus 282 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 361 (475)
...|++++|++.|++..+.. +-+...+..+..++.+.|++++ .+.|++.++.+.. +...|..+..++.+.|++++|+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998764 2356788899999999999999 9999999887644 5678999999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 011905 362 KLFSKMLASGVKPD-GLACSVMIRELCLGGQ 391 (475)
Q Consensus 362 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 391 (475)
+.|++..+. .|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999998855 566 4566666677666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.5e-08 Score=86.43 Aligned_cols=155 Identities=16% Similarity=0.108 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HH
Q 011905 307 VTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMI-RE 385 (475)
Q Consensus 307 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~ 385 (475)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++.... .|+........ ..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence 33444444445555555555555555443322 3344455555555555555555555554432 23322211111 12
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCC
Q 011905 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ--GPYVDKIVEHLKKSGD 463 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~g~ 463 (475)
+...++.+.|...+++..+.. +.+...+..+...+...|++++|.+.++++++.. +.+ ...+..++..+...|+
T Consensus 195 l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 334444444555555554443 1244455555555555555555555555555543 111 3444555555555555
Q ss_pred HhHHh
Q 011905 464 EELIT 468 (475)
Q Consensus 464 ~~~a~ 468 (475)
.+.|.
T Consensus 271 ~~~a~ 275 (287)
T 3qou_A 271 GDALA 275 (287)
T ss_dssp TCHHH
T ss_pred CCcHH
Confidence 44443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-07 Score=93.84 Aligned_cols=154 Identities=12% Similarity=-0.012 Sum_probs=103.7
Q ss_pred cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 247 LGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAY 326 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 326 (475)
.|++++|.+.+++..+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR---PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 467888888888887642 3456778888888888888888888888887653 335677778888888888888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 011905 327 QLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG---GQVLEGFCLYEDIE 403 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~ 403 (475)
+.+++..+.... +...+..+..+|...|++++|.+.+++..+.. ..+...+..+...+... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 888888776533 46677888888888888888888888887653 23456777777777778 88888888888888
Q ss_pred HcC
Q 011905 404 KIG 406 (475)
Q Consensus 404 ~~~ 406 (475)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-08 Score=80.78 Aligned_cols=109 Identities=7% Similarity=-0.046 Sum_probs=48.3
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGL 221 (475)
Q Consensus 142 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 221 (475)
.|++++|+..++...... +-+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|+..
T Consensus 10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 344445554444443321 1122233344444555555555555555444332 22344444444455555555555555
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCChHHH
Q 011905 222 FKVMKRHGCAANLVAYSALLDGICRLGSMERA 253 (475)
Q Consensus 222 ~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a 253 (475)
|+...+... -+..++..+...|.+.|++++|
T Consensus 88 ~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a 118 (150)
T 4ga2_A 88 YRRSVELNP-TQKDLVLKIAELLCKNDVTDGR 118 (150)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCChHHH
Confidence 554444321 1344444444445555544433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.2e-08 Score=87.51 Aligned_cols=162 Identities=11% Similarity=0.029 Sum_probs=89.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC--CCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 011905 241 LDGICRLGSMERALELLGEMEKEGG--DCS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTL 312 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~--~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~l 312 (475)
...|...|++++|.+.|.+..+... +-+ .-..+|+.+...|...|++++|+..|++..+. |-.. -..++..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777888888887777655210 000 11345666777777777777777777765432 1110 12345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHH
Q 011905 313 IKGFCVEGNLDEAYQLIDKVVAGGSVS-----SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV-KPD----GLACSVM 382 (475)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l 382 (475)
...|.. |++++|...|++.++..... ...++..+...|...|++++|+..|++..+... .++ ...+..+
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 566655 67777776666655421100 124455666666666666666666666654211 111 1133344
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 011905 383 IRELCLGGQVLEGFCLYEDIE 403 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~ 403 (475)
...+...|++++|...|++..
T Consensus 202 g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHh
Confidence 444555566666666666665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-07 Score=94.20 Aligned_cols=152 Identities=8% Similarity=-0.055 Sum_probs=90.6
Q ss_pred CChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 011905 108 QNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELM 187 (475)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 187 (475)
+++++|.+.++...+.. +-+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56667777776665543 3456666667777777777777777777766643 235666777777777777777777777
Q ss_pred HHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 011905 188 KGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRL---GSMERALELLGEMEKE 263 (475)
Q Consensus 188 ~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 263 (475)
++..+.. +.+...+..+..++.+.|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 7766543 3345666677777777777777777777766653 22556666677777777 7777777777777664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.1e-07 Score=78.03 Aligned_cols=161 Identities=10% Similarity=0.013 Sum_probs=124.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH-HHh
Q 011905 98 NRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL-FCE 176 (475)
Q Consensus 98 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~-~~~ 176 (475)
......+...|+++.|...++...+.. +-+...+..+...+.+.|++++|+..|++..+.. |+...+..+... +..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 345567778899999999999877654 5577888889999999999999999999998754 354444333222 223
Q ss_pred cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCChHHHHH
Q 011905 177 KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA-NLVAYSALLDGICRLGSMERALE 255 (475)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~g~~~~a~~ 255 (475)
.+....|.+.+++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 334445788888887654 4467889999999999999999999999999875432 35688899999999999999999
Q ss_pred HHHHHHh
Q 011905 256 LLGEMEK 262 (475)
Q Consensus 256 ~~~~~~~ 262 (475)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.82 E-value=8.7e-08 Score=86.57 Aligned_cols=186 Identities=12% Similarity=0.024 Sum_probs=112.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCCC-CcHHHHHHHH
Q 011905 207 KGFCNAGRLEDACGLFKVMKRH----GCA-ANLVAYSALLDGICRLGSMERALELLGEMEKEG--GDCS-PNVVTYTSVI 278 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~-~~~~~~~~li 278 (475)
..|...|++++|...|.+..+. |-. .-..+|+.+...|.+.|++++|+..|++..+.. .+-+ ....++..+.
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666655432 100 013456667777777788888877777665420 1101 1134566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHH
Q 011905 279 QIFCGKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVSS-GGCYSSLV 348 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li 348 (475)
..|.. |++++|+..|++..+. |... ...++..+...|.+.|++++|...|++..+. +..+. ...+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77777 8888888888776542 1100 1356777778888888888888888887653 21111 22566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHH
Q 011905 349 VELVRTKRLKEAEKLFSKMLASGVKPDG------LACSVMIRELCLGGQVLEGFC 397 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~ 397 (475)
.++...|++++|...|++.. . .|+. .....++.++ ..|+.+....
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 77777889999999888887 3 3321 2234444444 4566655544
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.3e-06 Score=75.54 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 011905 378 ACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNH-SVEAAKLARFML 440 (475)
Q Consensus 378 ~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~ 440 (475)
++..+...|...|++++|...+++..+. +..+ .-..+|..+..+|.+.|+ +++|.+.+++++
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA-LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT-THHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH-HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3444444555555555555555544432 1100 113455555555555553 455555555554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=5.7e-06 Score=73.96 Aligned_cols=162 Identities=10% Similarity=-0.016 Sum_probs=82.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 011905 241 LDGICRLGSMERALELLGEMEKEGGDCSPNVV----TYTSVIQIFCGKGMMKEALGILDRMEALGCA-PN----RVTIST 311 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~ 311 (475)
+..+...|++++|.+++++..... ...|+.. .+..+...+...|++++|+..+++....... ++ ..+++.
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 455566666666666666665531 1112211 2223444445555666666666666552211 11 124556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKVVA----G-GSVS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKPD-GLACS 380 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~ 380 (475)
+..+|...|++++|...+++..+ . +..+ ...+|..+...|.+.|++++|...+++..+. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 66666666666666666666552 1 1111 1234555666666666666666666655431 11122 34555
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHH
Q 011905 381 VMIRELCLGGQ-VLEGFCLYEDIE 403 (475)
Q Consensus 381 ~li~~~~~~g~-~~~a~~~~~~~~ 403 (475)
.+..++...|+ .++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55555666663 466666555544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-06 Score=73.79 Aligned_cols=130 Identities=10% Similarity=-0.041 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 011905 272 VTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVEL 351 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 351 (475)
..+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...++...+.... +...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 344556667777777777777777653 456677777777777777777777777777665422 456677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 352 VRTKRLKEAEKLFSKMLASGVKPD---------------GLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 352 ~~~g~~~~A~~~~~~m~~~~~~p~---------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
...|++++|.+.|++..+...... ...+..+..++...|++++|...+++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 777777777777777776421110 1455556666666777777777777666643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.8e-06 Score=73.47 Aligned_cols=169 Identities=9% Similarity=-0.059 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CC--hh
Q 011905 273 TYTSVIQIFCGKGMMKEALGILDRMEALGCAPN-----RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSV---SS--GG 342 (475)
Q Consensus 273 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~ 342 (475)
.+...+..+...|++++|.+.+++..+...... ...+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444456666777777777777776655422111 112334555667778888888888887753221 11 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCch
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS-GVKPD-----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDS 413 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~ 413 (475)
+|+.+...|...|++++|...|++..+. ...|+ ..++..+...|...|++++|...+++..+... .+..-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999888731 00122 25778888889999999999999998775421 111125
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 011905 414 DIHSVLLLGLCRKNHSVEA-AKLARFMLK 441 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 441 (475)
.+|..+..+|.+.|++++| ...+++.+.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7788899999999999999 777887764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-06 Score=73.48 Aligned_cols=129 Identities=14% Similarity=-0.011 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|++++|.+.|++.. .|+...|..+...+...|++++|...|++..+.. +.+...+..+..+|.+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3344555556666666666666553 3455566666666666666666666666665543 2345566666666666
Q ss_pred cCChHHHHHHHHHHHhcCCC------------CC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 247 LGSMERALELLGEMEKEGGD------------CS-PNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~~~~~------------~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
.|++++|.+.|++..+...+ .. .....+..+..++...|++++|.+.|+...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666666653210 00 11255666666677777777777777766654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.4e-07 Score=68.44 Aligned_cols=110 Identities=7% Similarity=-0.120 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+......|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|+..+++..+.+ +.+...|..+..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD---SKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh---hhhhHHHHHHHH
Confidence 456667778888888888888888887653 3356777778888888888888888888888865 236778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
++...|++++|++.|++.++.. |-+......+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 8888888888888888888876 555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-06 Score=66.64 Aligned_cols=116 Identities=12% Similarity=0.046 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+...|++++|.+.++++.+.. ..+...+..+...+...|++++|..+++++.+.. +.+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CccHHHHHHHH
Confidence 3456666677777777777777777776542 2345666667777777777777777777777654 23556677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
..+...|++++|.+.++++.... +.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 77777888888888887777765 45555565555555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-05 Score=70.77 Aligned_cols=178 Identities=10% Similarity=0.046 Sum_probs=127.6
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc-C-C
Q 011905 103 MSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK-G-D 179 (475)
Q Consensus 103 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g-~ 179 (475)
.+...+..++|+++.+.+...+ +-+..+|+.--..+...| .+++++..++.+.... +-+..+|+.-..++.+. + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 3444556667888888888776 556677777666777777 5899999999988765 34777888877777776 6 8
Q ss_pred hhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--
Q 011905 180 MIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE--------DACGLFKVMKRHGCAANLVAYSALLDGICRLGS-- 249 (475)
Q Consensus 180 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~-- 249 (475)
+++++++++++.+.. +.+...|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.++
T Consensus 141 ~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 889999999998765 556777766554444444444 788888888876543 77788877777777775
Q ss_pred -----hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011905 250 -----MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 250 -----~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
++++++.++++.... +-|...|+-+-..+.+.|+.
T Consensus 219 ~~~~~~~eELe~~~~aI~~~---P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLI---PHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCC
Confidence 678888888877753 45677777766666665543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-06 Score=67.43 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=86.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+...|++++|...+++..+.. ..+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID---PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC---ccCHHHHHHHH
Confidence 3456667777777788888888887777542 2356667777777778888888888888877754 23566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDE 464 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (475)
..+...|++++|.+.+++.++.. +.+...+..+..++.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888776 55667777777777777764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-06 Score=67.87 Aligned_cols=118 Identities=8% Similarity=-0.132 Sum_probs=83.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
+...+..+...+...|++++|...|++..+.. ..+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCchHHHHHH
Confidence 34566777777777888888888887777542 2256667777777777888888888888777754 2356777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 011905 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSG 462 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g 462 (475)
..++.+.|++++|.+.+++.++.. +.+...+..+..++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 788888888888888888887765 445556666666666555
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.63 E-value=6.8e-05 Score=72.07 Aligned_cols=344 Identities=8% Similarity=-0.081 Sum_probs=210.2
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhc-CC-ccCHHhHHHHHHHHH----hcCC
Q 011905 72 SQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQN-PSIIIDVVEAYKEE-GC-VVSVKMMKVIFNLCE----KARL 144 (475)
Q Consensus 72 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~~~ 144 (475)
++.+.+..+|...... .|+..+|...+....+.++ .+.+..+|+..... |. +.+...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 6778888888877653 2588888888877766553 45566777776553 42 447778877777654 3467
Q ss_pred HHHHHHHHHhcccCCCCCCHhhHHHHHHHHH-------------hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011905 145 ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFC-------------EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 145 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~-------------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 211 (475)
.+.+..+|++........-...|......-. ..+.+..|..+++.+...--..+...|...+.--..
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 8889999999987421111122222211110 011233344444443321001133456555554322
Q ss_pred cC--C-----HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011905 212 AG--R-----LEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 212 ~~--~-----~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
.+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|.+++++.... |.+...|.. |+..
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~----P~~~~l~~~----y~~~ 255 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM----SDGMFLSLY----YGLV 255 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHHHHH----HHHH
T ss_pred CCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcHHHHHH----HHhh
Confidence 11 1 345778999888753 456888888888899999999999999999984 333333322 2222
Q ss_pred CCHHHHHHHHHHHHHcC---------C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH--HHHH
Q 011905 285 GMMKEALGILDRMEALG---------C---APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSS--LVVE 350 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~---------~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--li~~ 350 (475)
...++. ++.+.+.- . ......|...+....+.++++.|..+|+.. ... ..+...|.. .+..
T Consensus 256 ~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 256 MDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp TTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred cchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 222222 22222110 0 011245666677777788899999999999 321 223334432 2322
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHH
Q 011905 351 LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSV 430 (475)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 430 (475)
.. .++.+.|..+|+...+.- .-+...+...++-....|+.+.|+.+|+.+.+ ....|...+..-...|+.+
T Consensus 331 ~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-------~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 331 YA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-------TSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-------BHHHHHHHHHHHHHHSCHH
T ss_pred HH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCHH
Confidence 22 336999999999998752 12344455567767788999999999999721 5678888888778889999
Q ss_pred HHHHHHHHHHH
Q 011905 431 EAAKLARFMLK 441 (475)
Q Consensus 431 ~A~~~~~~m~~ 441 (475)
.+.++++++..
T Consensus 402 ~~r~v~~~~~~ 412 (493)
T 2uy1_A 402 LFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888874
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.6e-06 Score=75.27 Aligned_cols=169 Identities=9% Similarity=-0.062 Sum_probs=102.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCC-----HhhHHHHHHHHHhcCChhHHHHHHHHhccCCC---CCC--h
Q 011905 130 KMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPD-----TIIYNNVIRLFCEKGDMIAADELMKGMGLIDL---YPD--I 199 (475)
Q Consensus 130 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~--~ 199 (475)
..+...+..+...|++++|.+.+++..+.....+ ...+..+...+...|++++|++.+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556677788888888888877665422111 12233455566677788888888777654221 111 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCc--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCc
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKR---H-GCAA--NLVAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPN 270 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-g~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ 270 (475)
.+|+.+...|...|++++|...|++..+ . +-.+ ...++..+...|.+.|++++|.+.+++..+.. .....-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677777777778888888887777652 1 1111 12466777777777888888887777765421 000011
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 011905 271 VVTYTSVIQIFCGKGMMKEA-LGILDRME 298 (475)
Q Consensus 271 ~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 298 (475)
..+|..+...|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45666677777777777777 55555443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3.2e-05 Score=69.75 Aligned_cols=244 Identities=10% Similarity=-0.052 Sum_probs=112.4
Q ss_pred ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-C-ChHHHHH
Q 011905 179 DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL-G-SMERALE 255 (475)
Q Consensus 179 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-g-~~~~a~~ 255 (475)
..++|+++++++...+ +-+..+|+.--..+...| ++++++++++.+.....+ +..+|+.-...+.+. + +++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3345555555555433 223334444444444444 355555555555554322 444444444444443 4 4555555
Q ss_pred HHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011905 256 LLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG 335 (475)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 335 (475)
+++++.+.. +.+-.+|+.-.-.+.+.|.++. .+ ...+.++++.++++++.
T Consensus 147 ~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~--------------~~-------------~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 147 YIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGR--------------IS-------------EAQWGSELDWCNEMLRV 196 (349)
T ss_dssp HHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTC--------------CC-------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---CCCHHHHHHHHHHHHHhccccc--------------cc-------------hhhHHHHHHHHHHHHHh
Confidence 555555432 2344444443333333333220 00 00012455555555554
Q ss_pred CCCCChhhHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------------
Q 011905 336 GSVSSGGCYSSLVVELVRTKR-------LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQV---------------- 392 (475)
Q Consensus 336 ~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---------------- 392 (475)
++. |..+|+.....+.+.++ ++++++.+++++... .-|...|+.+-..+.+.|+.
T Consensus 197 dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~ 274 (349)
T 3q7a_A 197 DGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKL 274 (349)
T ss_dssp CTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC---
T ss_pred CCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccc
Confidence 432 34444444444444443 455666665555432 22344444443333333332
Q ss_pred ----HHHHHHHHHHHHcC---CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 393 ----LEGFCLYEDIEKIG---FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 393 ----~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
.....+..++...+ ............+++.|...|+.++|.++++.+.+.--+.....|+-..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 275 NPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp -----------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 12222222222211 00013566777888888888888888888888875543555555554433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-06 Score=69.44 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|+++.|...|++..... +.+..++..+...+...|++++|...+++..+.. +.+...+..+..++.+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444444555555555554444322 2234444444444444555555555554444432 1234444444445555
Q ss_pred cCChHHHHHHHHHHHh
Q 011905 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.+++..+
T Consensus 94 ~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 94 LGKFRAALRDYETVVK 109 (166)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH
Confidence 5555555555554444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.57 E-value=2.2e-06 Score=65.06 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444444444444444444444443322 2233344444444444444444444444444332 123334444444444
Q ss_pred hcCChHHHHHHHHHHHh
Q 011905 246 RLGSMERALELLGEMEK 262 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~ 262 (475)
..|++++|.+.++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.5e-06 Score=67.85 Aligned_cols=127 Identities=11% Similarity=0.026 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL 388 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 388 (475)
+..+...+...|++++|...|+...+.... +..++..+...+...|++++|...+++..+.. ..+...+..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 444445555566666666666665554322 34556666666666666666666666666542 2244556666666667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCCchhhHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 011905 389 GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL--LLGLCRKNHSVEAAKLARFML 440 (475)
Q Consensus 389 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~~~~~m~ 440 (475)
.|++++|...++++.+... .+...+..+ +..+...|++++|++.+.+..
T Consensus 94 ~~~~~~A~~~~~~a~~~~p---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKP---HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777666531 233344322 333556677777777766544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=2.1e-06 Score=65.84 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++.++.. +.+...|..+..+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444444555555555555555444332 2334444444444555555555555555444432 123444444445555
Q ss_pred hcCChHHHHHHHHHHHh
Q 011905 246 RLGSMERALELLGEMEK 262 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~ 262 (475)
..|++++|.+.|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 55555555555554444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=6.4e-06 Score=65.25 Aligned_cols=103 Identities=13% Similarity=-0.017 Sum_probs=85.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|...|++..+.. +.+...|..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHHH
Confidence 4567778888899999999999999998763 2357788888889999999999999999999875 24678889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
.+|.+.|++++|.+.|++.++.. |+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999999876 4443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-06 Score=72.82 Aligned_cols=100 Identities=9% Similarity=-0.152 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCCch
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKP--DGLACSVMIRELCLGGQVLEGFCLYEDIEKIG---FLSSVDS 413 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~ 413 (475)
++..+...|...|++++|.+.+++..+. +-.| ....+..+...+...|++++|...+++..+.. ..+....
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 3444555555555555555555554431 1011 12234445555556666666666666554321 0000112
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 414 DIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 414 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.++..+...+...|++++|.+.+++.++.
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 33455666666777777777776666543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.4e-06 Score=65.80 Aligned_cols=98 Identities=10% Similarity=0.016 Sum_probs=55.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44455555556666666666666666555432 2344555555555556666666666666555542 224555555556
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 011905 243 GICRLGSMERALELLGEMEK 262 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~ 262 (475)
++.+.|++++|.+.|++..+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666665554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.5e-06 Score=72.87 Aligned_cols=156 Identities=14% Similarity=-0.002 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC-CCCcHHHHHHHHHHHHhcCCHH
Q 011905 212 AGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEG--GD-CSPNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~~~~li~~~~~~g~~~ 288 (475)
.|++++|.++++.+... ......++..+...+...|++++|...+++..... .+ .+....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 44555555533333221 11233444555555555555555555555444310 00 0112233444445555555555
Q ss_pred HHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCH
Q 011905 289 EALGILDRMEAL----GCAP--NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVS-SGGCYSSLVVELVRTKRL 357 (475)
Q Consensus 289 ~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~ 357 (475)
+|.+.+++..+. +..+ ....+..+...+...|++++|...+++..+. +... ...++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 555555443321 1011 1223344444455555555555555444321 1000 012234444555555555
Q ss_pred HHHHHHHHHHH
Q 011905 358 KEAEKLFSKML 368 (475)
Q Consensus 358 ~~A~~~~~~m~ 368 (475)
++|.+.+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.9e-06 Score=75.04 Aligned_cols=190 Identities=11% Similarity=-0.008 Sum_probs=114.2
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCcHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------
Q 011905 246 RLGSMERALELLGEMEKEGGDCSPNVVTYTSV-------IQIFCGKGMMKEALGILDRMEALGCAPN------------- 305 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~p~------------- 305 (475)
..++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d---P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD---ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhC---hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccc
Confidence 4567777777777776643 2345556555 3444444444444444433322 1111
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 011905 306 ---------RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD- 375 (475)
Q Consensus 306 ---------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~- 375 (475)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 1223345566777788888888887776654 322245555567778888888888887554321 111
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 376 -GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 376 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
...+..+-.++...|++++|+..|++.......|............++.+.|+.++|..+|+++....
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23556666777888888888888888774322132233455666777778888888888888888775
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-06 Score=69.23 Aligned_cols=99 Identities=11% Similarity=-0.085 Sum_probs=72.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|++++|...+++..+.. +.+...|..+.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg 96 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHHHH
Confidence 4456666777778888888888888777653 2356667777777778888888888888877764 23566777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.+|...|++++|.+.|++.++..
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 88888888888888888877654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=5.6e-07 Score=80.01 Aligned_cols=97 Identities=9% Similarity=-0.096 Sum_probs=49.5
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 011905 164 TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG 243 (475)
Q Consensus 164 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 243 (475)
...+..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|...++...+.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444445555555555555555555554432 2244445555555555555555555555555442 2244455555555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 011905 244 ICRLGSMERALELLGEMEK 262 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~ 262 (475)
|...|++++|.+.|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=3e-06 Score=64.90 Aligned_cols=94 Identities=10% Similarity=0.004 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR 246 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 246 (475)
+..+...+...|+++.|.+.+++..... +.+...+..+...+...|++++|...++...+.. +.+...+..+...+.+
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3334444444444444444444433321 2233333344444444444444444444443332 1123334444444444
Q ss_pred cCChHHHHHHHHHHHh
Q 011905 247 LGSMERALELLGEMEK 262 (475)
Q Consensus 247 ~g~~~~a~~~~~~~~~ 262 (475)
.|++++|.+.+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.5e-06 Score=71.09 Aligned_cols=121 Identities=7% Similarity=0.033 Sum_probs=69.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 011905 318 VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE-LCLGGQV--LE 394 (475)
Q Consensus 318 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~ 394 (475)
..|++++|...++...+.... +...|..+...|...|++++|...|++..+.. ..+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345556666666665554322 34556666666666666666666666665432 1234455555555 5566666 66
Q ss_pred HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 395 GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 395 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
|...++++.+.. +.+...+..+...+...|++++|.+.++++++..
T Consensus 100 A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 666666666653 2245566666666667777777777777766654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-06 Score=74.50 Aligned_cols=127 Identities=8% Similarity=-0.040 Sum_probs=67.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 011905 239 ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN--RVTISTLIKGF 316 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~ 316 (475)
.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+-.++
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG----SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 34455556666666666666555422 332244444445566666666666665333221 110 12445555566
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 317 CVEGNLDEAYQLIDKVVAGGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
...|++++|+..|++.......|. .........++.+.|+.++|...|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666666666666666654322132 223444555666666677777766666654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=69.33 Aligned_cols=97 Identities=15% Similarity=0.006 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
..+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..|++..+.. |.+...|..+..
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~lg~ 112 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHHHH
Confidence 344555555555666666666666555543 2245555555666666666666666666655532 233455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 011905 280 IFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~ 300 (475)
+|...|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 666666666666666555553
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.48 E-value=7.9e-07 Score=79.03 Aligned_cols=96 Identities=13% Similarity=-0.026 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVI 278 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 278 (475)
...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 3444445555555555555555555555442 1244455555555555555555555555555431 23344445555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 011905 279 QIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 279 ~~~~~~g~~~~a~~~~~~m~ 298 (475)
.+|...|++++|...|++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.4e-06 Score=71.36 Aligned_cols=120 Identities=7% Similarity=0.009 Sum_probs=66.3
Q ss_pred hcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH-HHhcCCh--HH
Q 011905 176 EKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDG-ICRLGSM--ER 252 (475)
Q Consensus 176 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~-~~~~g~~--~~ 252 (475)
..|++++|...+++..... +.+...|..+...+...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455666666666554433 3345556666666666666666666666665543 1245555555555 5566665 66
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 253 ALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 253 a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
|...++++.+.. +.+...+..+...+...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666665532 234455555666666666666666666665554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.46 E-value=4.4e-06 Score=76.30 Aligned_cols=146 Identities=11% Similarity=0.023 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 011905 270 NVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVV 349 (475)
Q Consensus 270 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 349 (475)
+...+..+...+.+.|++++|+..|++..+.. |+...+ ..+.+..+- .. ...+|..+..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~~~-~~-------~~~~~~nla~ 204 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQKAQ-AL-------RLASHLNLAM 204 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHHHHH-HH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHHHHH-HH-------HHHHHHHHHH
Confidence 45556666666777777777777776666542 111000 000000000 00 1345666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011905 350 ELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (475)
+|.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.|++
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777643 2345666777777777777777777777777754 23566777777777777777
Q ss_pred HHH-HHHHHHHH
Q 011905 430 VEA-AKLARFML 440 (475)
Q Consensus 430 ~~A-~~~~~~m~ 440 (475)
++| .++++.|.
T Consensus 281 ~~a~~~~~~~~~ 292 (336)
T 1p5q_A 281 LAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777 34555554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1e-05 Score=60.63 Aligned_cols=110 Identities=10% Similarity=-0.078 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC---cccHHHHHHHHH
Confidence 446666677777777888877777776542 2255666677777777788888888888777764 235667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 422 GLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
++...|++++|.+.+++..+.. +.+...+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 114 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 114 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 8888888888888888877665 444444444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=4.2e-06 Score=76.41 Aligned_cols=124 Identities=6% Similarity=-0.188 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD--------------GLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
..+..+...|.+.|++++|+..|++.++...... ...|..+..+|.+.|++++|...+++..+..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3455555566666666666666666654321111 4678888899999999999999999999975
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhh
Q 011905 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITN 469 (475)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (475)
+.+...|..+..+|...|++++|++.|+++++.. +.+...+..+..++.+.|+.+++.+
T Consensus 227 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 227 --SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp --TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999999999999999999987 6778889999999999999988843
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00037 Score=62.47 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC-HHHHH
Q 011905 215 LEDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM-MKEAL 291 (475)
Q Consensus 215 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~ 291 (475)
+++++.+++.+.....+ +..+|+.-...+.+.| .+++++.+++.+.+.. +.|..+|+.-.-.+...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 34455555555544322 4444544444444444 2555555555555532 3455555554444445554 35555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHH
Q 011905 292 GILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 292 ~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
+.++.+.+..+ -|...|+....
T Consensus 166 ~~~~~~I~~~p-~N~SAW~~R~~ 187 (331)
T 3dss_A 166 AFTDSLITRNF-SNYSSWHYRSC 187 (331)
T ss_dssp HHHHHHHHHCS-CCHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCHHHHHHHHH
Confidence 55555555432 23444443333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-06 Score=67.94 Aligned_cols=92 Identities=14% Similarity=0.018 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHH
Q 011905 203 VSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFC 282 (475)
Q Consensus 203 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 282 (475)
..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|.+.|++..... +.+...+..+..+|.
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Confidence 333344444444444444444444332 1133344444444444444444444444444321 122333344444444
Q ss_pred hcCCHHHHHHHHHHHH
Q 011905 283 GKGMMKEALGILDRME 298 (475)
Q Consensus 283 ~~g~~~~a~~~~~~m~ 298 (475)
..|++++|...|+...
T Consensus 101 ~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQ 116 (148)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=6.7e-06 Score=64.49 Aligned_cols=98 Identities=8% Similarity=-0.142 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+..+...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 94 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHH
Confidence 344555666667777777777777776542 2245566666667777777777777777777654 235566667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 011905 422 GLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+|...|++++|.+.|++.++..
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777776654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00033 Score=62.77 Aligned_cols=197 Identities=10% Similarity=0.013 Sum_probs=143.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHH
Q 011905 250 MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG--MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGN-LDEAY 326 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~a~ 326 (475)
+++++.+++.+.... +-+..+|+.-.-.+...| ++++++++++.+.+.. +-|...|+.-.-++...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~---PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN---PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 678999999998853 567888888777777777 4899999999999875 3477788777777778888 68999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---
Q 011905 327 QLIDKVVAGGSVSSGGCYSSLVVELVRT--------------KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLG--- 389 (475)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--- 389 (475)
+.++.+++.++. |..+|+.....+... +.++++++.+.+..... +-|...|+-+-..+.+.
T Consensus 166 ~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 166 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCc
Confidence 999999987755 666777766666554 45788999999988753 33566666554444444
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 390 --------GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL-----CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 390 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~-----~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
+.++++++.++++.+.. | .+ .|+.+..++ -..|..+++..++.++++.+ |.....|..+..
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~--p-d~--~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~ 317 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELE--P-EN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRS 317 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHC--T-TC--HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhC--c-cc--chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHH
Confidence 45788999999999864 3 23 344332222 24678889999999999887 666666666555
Q ss_pred HH
Q 011905 457 HL 458 (475)
Q Consensus 457 ~~ 458 (475)
.+
T Consensus 318 ~~ 319 (331)
T 3dss_A 318 KF 319 (331)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-05 Score=62.61 Aligned_cols=112 Identities=7% Similarity=-0.160 Sum_probs=78.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI 415 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 415 (475)
+...+..+...+...|++++|.+.|++..+. .|+ ...+..+...+...|++++|...+++..+.. +.+...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD---GGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---SCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---ccCHHH
Confidence 3455666777777778888888888777754 455 4566667777778888888888888777753 235667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011905 416 HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
|..+..++...|++++|.+.+++.++.. +.+...+..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 7777788888888888888888887765 4445555444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=7.5e-06 Score=63.53 Aligned_cols=99 Identities=9% Similarity=-0.082 Sum_probs=66.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHH
Q 011905 340 SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVL 419 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 419 (475)
+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHHHH
Confidence 44556666667777777777777777766542 2245666666667777777777777777777654 2356667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 011905 420 LLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
..++...|++++|.+.++++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 77777777777777777777654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.35 E-value=7.4e-06 Score=66.03 Aligned_cols=98 Identities=8% Similarity=-0.110 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011905 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRE 385 (475)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 385 (475)
...+..+...+.+.|++++|...|++.++.... +...|..+..+|...|++++|+..|++.++.. .-+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334445555555555555555555555544322 34445555555555555555555555555432 1124445555555
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 011905 386 LCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~ 405 (475)
+...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 55555555555555555543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-05 Score=61.44 Aligned_cols=98 Identities=10% Similarity=-0.109 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~ 80 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD---PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHH
Confidence 345666677777788888888887777643 2346677777777778888888888888777764 235677777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 011905 422 GLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
++...|++++|.+.+++.++..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 8888888888888888777653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.2e-05 Score=58.71 Aligned_cols=95 Identities=14% Similarity=-0.027 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGIC 245 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 245 (475)
.+..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444455555555555555555544332 2234444445555555555555555555554432 123444555555555
Q ss_pred hcCChHHHHHHHHHHHh
Q 011905 246 RLGSMERALELLGEMEK 262 (475)
Q Consensus 246 ~~g~~~~a~~~~~~~~~ 262 (475)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.7e-05 Score=60.72 Aligned_cols=109 Identities=13% Similarity=0.047 Sum_probs=78.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hhhHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD----SDIHSV 418 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~ 418 (475)
++..+...+.+.|++++|++.|++.++.. +-+...|..+..+|...|++++|++.+++..+.......+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 46667778888888888888888887653 2346677777788888888888888888877643111001 246777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHH
Q 011905 419 LLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKI 454 (475)
Q Consensus 419 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 454 (475)
+..++...|++++|++.|++.+.. .|++.+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 788888889999999999988875 3666665544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.1e-05 Score=65.65 Aligned_cols=124 Identities=15% Similarity=0.016 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS---------------GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
...+..+...+...|++++|...|++.++...... ..+|..+..+|...|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34455556666667777777777777665432211 134555555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 011905 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 433 (475)
. ..+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2234445555555555555555555555555542 123444455544444444444444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.29 E-value=9.5e-06 Score=63.61 Aligned_cols=87 Identities=15% Similarity=0.006 Sum_probs=34.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
..+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..... +.+...+..+..+|...|+
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD---INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHcCC
Confidence 33344444444444444443332 1133334444444444444444444444444321 1223333334444444444
Q ss_pred HHHHHHHHHHH
Q 011905 287 MKEALGILDRM 297 (475)
Q Consensus 287 ~~~a~~~~~~m 297 (475)
+++|...|+..
T Consensus 102 ~~~A~~~~~~a 112 (142)
T 2xcb_A 102 LDGAESGFYSA 112 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.3e-05 Score=58.90 Aligned_cols=92 Identities=11% Similarity=-0.014 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011905 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
..+...+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|...++..++.+.. +...|..+..++...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH
Confidence 333344444444444444444443331 113334444444444444444444444444433221 233344444444444
Q ss_pred CCHHHHHHHHHHHH
Q 011905 355 KRLKEAEKLFSKML 368 (475)
Q Consensus 355 g~~~~A~~~~~~m~ 368 (475)
|++++|...|++..
T Consensus 86 ~~~~~A~~~~~~al 99 (126)
T 3upv_A 86 KEYASALETLDAAR 99 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHH
Confidence 44444444444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-05 Score=61.51 Aligned_cols=115 Identities=12% Similarity=-0.015 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCc----hhhHH
Q 011905 342 GCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVD----SDIHS 417 (475)
Q Consensus 342 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~ 417 (475)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.......+ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345666667777777777777777776543 2345666667777777777887777777776653110011 56677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 418 VLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 418 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
.+...+...|++++|.+.++++.+.. |+......+.....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 77888888888888888888888764 45665555554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.4e-05 Score=59.23 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC--cHHHHHHHHH
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP--NVVTYTSVIQ 279 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~ 279 (475)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI---EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cccchHHHHHHHHH
Confidence 3334444444444444444444444332 1133444444444444444444444444444421 12 3444444444
Q ss_pred HHHhc-CCHHHHHHHHHHHHH
Q 011905 280 IFCGK-GMMKEALGILDRMEA 299 (475)
Q Consensus 280 ~~~~~-g~~~~a~~~~~~m~~ 299 (475)
.+... |++++|.+.++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 44444 444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-05 Score=58.72 Aligned_cols=99 Identities=16% Similarity=0.094 Sum_probs=61.4
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc--CHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA--NLVAYSAL 240 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~~~~~l 240 (475)
+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34455566666666666666666666665543 3345556666666666666666666666666542 22 35566666
Q ss_pred HHHHHhc-CChHHHHHHHHHHHhc
Q 011905 241 LDGICRL-GSMERALELLGEMEKE 263 (475)
Q Consensus 241 l~~~~~~-g~~~~a~~~~~~~~~~ 263 (475)
...+.+. |++++|.+.+++....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6666666 6666676666666654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.8e-05 Score=72.68 Aligned_cols=199 Identities=7% Similarity=-0.013 Sum_probs=109.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCH----------------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC
Q 011905 206 IKGFCNAGRLEDACGLFKVMKRHGCAANL----------------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSP 269 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~----------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 269 (475)
.+.+.+.|++++|++.|..+.+....... ..+..+...|.+.|++++|.+.+..+......+ +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~ 89 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF-A 89 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-C
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-c
Confidence 34556677888888887777765322111 135566777777777777777777665521111 1
Q ss_pred cHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC-
Q 011905 270 NVV----TYTSVIQIFCGKGMMKEALGILDRMEA----LGCAPN-RVTISTLIKGFCVEGNLDEAYQLIDKVVAG--GS- 337 (475)
Q Consensus 270 ~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~- 337 (475)
+.. +.+.+...+...|+.+++..+++.... .+..+. ..++..+...|...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 211 122222333345667777777666542 222222 345556666677777777777776665432 11
Q ss_pred -CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 338 -VS-SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVK-P-D--GLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 338 -~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~-p-~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.+ ...++..++..|...|++++|..++++.... .+. | . ...+..+...+...|++++|...+.+..+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 11 1345666666677777777777776665431 111 1 1 133444445555666777776666666654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.6e-05 Score=58.91 Aligned_cols=97 Identities=8% Similarity=0.048 Sum_probs=42.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc----HHHHHHH
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN----VVTYTSV 277 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~~l 277 (475)
+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|++.+++..+......++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3344444555555555555555544432 1234445555555555555555555555444321000000 1233344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011905 278 IQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 278 i~~~~~~g~~~~a~~~~~~m~~ 299 (475)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4444445555555555544443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.9e-05 Score=64.68 Aligned_cols=156 Identities=11% Similarity=-0.062 Sum_probs=80.5
Q ss_pred HHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------HH
Q 011905 243 GICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN---------------RV 307 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---------------~~ 307 (475)
.....|+++++.+.++.-.... ......+..+...+...|++++|+..|++......... ..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK---VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ---------CCCSGGGCCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3344455555555554322210 12344556666667777777777777777665421111 15
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELC 387 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 387 (475)
.+..+..+|.+.|++++|...++..++... .+...+..+..+|...|++++|.+.|++..+.. +-+...+..+...+.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 666666677777777777777777766542 245566667777777777777777777766542 123445555555555
Q ss_pred hcCCHHHHH-HHHHHHH
Q 011905 388 LGGQVLEGF-CLYEDIE 403 (475)
Q Consensus 388 ~~g~~~~a~-~~~~~~~ 403 (475)
..++.+++. ..+..+.
T Consensus 168 ~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 168 KLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 555554444 3333333
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00011 Score=69.37 Aligned_cols=199 Identities=9% Similarity=-0.051 Sum_probs=143.5
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCcC
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDI----------------ITYVSMIKGFCNAGRLEDACGLFKVMKRHG-CAAN 233 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~----------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~ 233 (475)
...+.+.|++++|++.|.++.+....... ..+..+...|...|++++|.+.+..+.+.- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999998775422111 236778999999999999999999876531 1122
Q ss_pred HH----HHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-
Q 011905 234 LV----AYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GCA- 303 (475)
Q Consensus 234 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~- 303 (475)
.. +.+.+-..+...|+++.|.+++....... .....-..++..+...|...|++++|..++++.... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 22 23333444556789999999999886521 111223567788999999999999999999987643 111
Q ss_pred -C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 304 -P-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 304 -p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
+ ....+..+++.|...|++++|..+++..... +..+. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 2457888899999999999999999987642 21111 24566777778888999999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.3e-05 Score=63.02 Aligned_cols=99 Identities=12% Similarity=-0.010 Sum_probs=61.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+..+...+.+.|++++|++.|++..... +.+...|..+..++.+.|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34455666666666666666666666665543 3345566666666666666666666666666553 224566666666
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 011905 243 GICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~~~ 263 (475)
+|.+.|++++|.+.|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666677666666666653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.21 E-value=3.2e-05 Score=59.88 Aligned_cols=95 Identities=13% Similarity=-0.023 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 200 ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 200 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
..+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...+++..+.. +.+...|..+..
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~ 85 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---chhHHHHHHHHH
Confidence 334444444444444444444444443332 1133444444444444444444444444444421 223334444444
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 011905 280 IFCGKGMMKEALGILDRME 298 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~ 298 (475)
++...|++++|...|++..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 4444444444444444433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.19 E-value=5.6e-05 Score=57.71 Aligned_cols=97 Identities=12% Similarity=0.066 Sum_probs=62.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
..+...+...|++++|...|++..+.. |+. ..+..+..++...|++++|...++++.+.....+.....+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 345556667777777777777776542 222 35555666677777777777777777765421100145566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.++...|++++|.+.++++++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 77777777777777777777664
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-05 Score=60.52 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CcC----HHHHHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC--AAN----LVAYSAL 240 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~~~~~l 240 (475)
+..+...+...|+++.|...|++..... +.+...+..+...+...|++++|...++...+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444444444455555555554444322 22334444444444444555555544444443211 011 3344444
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 011905 241 LDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...|.+.|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.7e-05 Score=58.74 Aligned_cols=97 Identities=9% Similarity=-0.056 Sum_probs=53.9
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPD----IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYS 238 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 238 (475)
+...+..+...+...|++++|.+.|++..+. .|+ ...|..+...+...|++++|...++...+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4445555555666666666666666665543 233 3445555555555666666666665555442 22445555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHh
Q 011905 239 ALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 239 ~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
.+..+|...|++++|.+.|++..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555556666666666666665555
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-05 Score=62.58 Aligned_cols=100 Identities=13% Similarity=0.020 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCCchh
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLAS----GVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF---LSSVDSD 414 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~ 414 (475)
++..+...+...|++++|.+.+++..+. +-.+ ....+..+...+...|++++|...+++..+... .+.....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4555666666666666666666665432 1000 123455566667777777777777776654310 0111245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 415 IHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 415 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
++..+...+...|++++|.+.+++.++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5677777788888888888888877653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.13 E-value=3.1e-05 Score=73.94 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS--------------GGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
....+..+...+.+.|++++|...|++.++...... ..+|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 355677888889999999999999999887543321 467888888999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHH-HHHHHHHc
Q 011905 371 GVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAK-LARFMLKK 442 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~ 442 (475)
. ..+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.+++++|.+ +++.|..+
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 3357788888888999999999999999988864 2366788888888888888887764 55666544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.5e-05 Score=62.76 Aligned_cols=101 Identities=14% Similarity=-0.020 Sum_probs=67.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLAS--------G---------VKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
+......+.+.|++++|+..|.+.++. . -..+...|..+..+|.+.|++++|...+++..+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 444555555666666666666555432 0 01123456677777888888888888888888764
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 011905 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQG 448 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 448 (475)
+.+...|..+..+|...|++++|.+.|++.+... |.+.
T Consensus 94 ---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-p~~~ 131 (162)
T 3rkv_A 94 ---ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH-PAAA 131 (162)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGH
T ss_pred ---CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CCCH
Confidence 2367778888888888888888888888888775 3344
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.10 E-value=6.3e-06 Score=62.17 Aligned_cols=87 Identities=10% Similarity=-0.005 Sum_probs=51.6
Q ss_pred cCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHH
Q 011905 354 TKRLKEAEKLFSKMLASGV-KP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVE 431 (475)
Q Consensus 354 ~g~~~~A~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 431 (475)
.|++++|+..|++.++.+. .| +...+..+...|...|++++|...+++..+.. +.+..++..+..++.+.|++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHHH
Confidence 4566666666666665421 12 23455556666666777777777777766654 2245666667777777777777
Q ss_pred HHHHHHHHHHcC
Q 011905 432 AAKLARFMLKKR 443 (475)
Q Consensus 432 A~~~~~~m~~~~ 443 (475)
|++.+++.+...
T Consensus 80 A~~~~~~al~~~ 91 (117)
T 3k9i_A 80 GVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 777777766654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=3.4e-05 Score=58.47 Aligned_cols=96 Identities=11% Similarity=0.034 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+.+.|++++|+..|++.++.. +-+...+..+..++...|++++|+..+++..+.. +.+...+..+..++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 4556667778888888888888887652 2256677777777888888888888888888764 23667778888888
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 011905 424 CRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~ 443 (475)
...|++++|++.+++.++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888877654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.09 E-value=3.5e-05 Score=71.16 Aligned_cols=91 Identities=4% Similarity=-0.217 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011905 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|++.|+++++.. +.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3566667777778888888888888887754 2366777788888888888888888888888776 55667777777
Q ss_pred HHHHhcCCHhHHhhc
Q 011905 456 EHLKKSGDEELITNL 470 (475)
Q Consensus 456 ~~~~~~g~~~~a~~l 470 (475)
.++...++.+++.+.
T Consensus 349 ~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 349 KVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.9e-05 Score=75.82 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=39.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011905 316 FCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEG 395 (475)
Q Consensus 316 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 395 (475)
+.+.|++++|.+.+++.++.... +..+|..+..+|.+.|++++|++.+++..+.. .-+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 33444555555555544443221 23444444444445555555555554444432 11233444444444444444444
Q ss_pred HHHHHHHHHc
Q 011905 396 FCLYEDIEKI 405 (475)
Q Consensus 396 ~~~~~~~~~~ 405 (475)
.+.+++..+.
T Consensus 94 ~~~~~~al~~ 103 (477)
T 1wao_1 94 LRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=3.8e-05 Score=58.17 Aligned_cols=89 Identities=9% Similarity=-0.098 Sum_probs=37.0
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
...+.+.|++++|...|++..... +.+...|..+..++...|++++|+..|++..+... -+...+..+..+|.+.|++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 333444444444444444443322 22333444444444444444444444444443321 1333444444444444444
Q ss_pred HHHHHHHHHHH
Q 011905 251 ERALELLGEME 261 (475)
Q Consensus 251 ~~a~~~~~~~~ 261 (475)
++|...+++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=4.3e-05 Score=60.80 Aligned_cols=96 Identities=17% Similarity=0.089 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-cCHH
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLIDLY-PD----IITYVSMIKGFCNAGRLEDACGLFKVMKRHG----CA-ANLV 235 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~-~~~~ 235 (475)
++..+...+...|++++|.+.+++....... ++ ..++..+...+...|++++|...+++..+.. -. ....
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444455555555555555444321100 00 1234444444455555555555554433210 00 0123
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
.+..+...+...|++++|.+.+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444455555555555555555443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00024 Score=54.04 Aligned_cols=91 Identities=11% Similarity=-0.024 Sum_probs=43.1
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHH
Q 011905 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDI---ITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAAN---LVAYSALLDG 243 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~ll~~ 243 (475)
+...+...|++++|.+.|+++.... +.+. ..+..+..++...|++++|...|+...+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 3344445555555555555544322 1111 24444445555555555555555555443211 1 3344445555
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 011905 244 ICRLGSMERALELLGEMEK 262 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~ 262 (475)
+.+.|++++|.+.|+++..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.99 E-value=8.4e-05 Score=70.90 Aligned_cols=151 Identities=15% Similarity=0.029 Sum_probs=112.1
Q ss_pred CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHH
Q 011905 248 GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPN--------------RVTISTLI 313 (475)
Q Consensus 248 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li 313 (475)
+++++|.+.|+...... +.....|..+...+.+.|++++|+..|++..+...... ...|..+.
T Consensus 248 ~~~~~A~~~~~~~~~~~---~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK---LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEECCCCGGGSCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH---HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 34455555554433311 13456788889999999999999999999887532211 57888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-GLACSVMIRELCLGGQV 392 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 392 (475)
.+|.+.|++++|...+++.++.... +...|..+..+|...|++++|+..|++..+. .|+ ...+..+..++...++.
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~ 401 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEH 401 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987643 6788999999999999999999999999965 453 45677777777788877
Q ss_pred HHHHH-HHHHHHH
Q 011905 393 LEGFC-LYEDIEK 404 (475)
Q Consensus 393 ~~a~~-~~~~~~~ 404 (475)
+++.+ .++.|..
T Consensus 402 ~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 402 NERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHh
Confidence 76653 4444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.4e-05 Score=58.87 Aligned_cols=85 Identities=14% Similarity=-0.007 Sum_probs=43.1
Q ss_pred cCChhHHHHHHHHhccCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHH
Q 011905 177 KGDMIAADELMKGMGLID--LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERAL 254 (475)
Q Consensus 177 ~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~ 254 (475)
.|++++|+..|++..+.+ -+.+...+..+..++...|++++|+..|++..+... -+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence 355555555555555432 122334455555555555666666666655555432 24455555555566666666666
Q ss_pred HHHHHHHh
Q 011905 255 ELLGEMEK 262 (475)
Q Consensus 255 ~~~~~~~~ 262 (475)
..+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.92 E-value=3.9e-05 Score=73.55 Aligned_cols=124 Identities=7% Similarity=-0.032 Sum_probs=94.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 011905 275 TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRT 354 (475)
Q Consensus 275 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 354 (475)
..+...+.+.|++++|++.+++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.... +...|..+..+|...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 334456778899999999999998763 335788999999999999999999999999987643 577899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 011905 355 KRLKEAEKLFSKMLASGVKPD-GLACSVMIRE--LCLGGQVLEGFCLYEDI 402 (475)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~--~~~~g~~~~a~~~~~~~ 402 (475)
|++++|.+.|++..+.. |+ ...+..+..+ +.+.|++++|.+.+++.
T Consensus 88 g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999998753 32 3344444444 77788888888887753
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00077 Score=65.89 Aligned_cols=172 Identities=8% Similarity=-0.055 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC--
Q 011905 288 KEALGILDRMEALGCAPNRVTISTLIKGFCVEGN----------LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTK-- 355 (475)
Q Consensus 288 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 355 (475)
++|++.++.+...+. -+...|+.--.++...|+ ++++.+.++.+.+.+.+ +..+|+.-...+.+.+
T Consensus 46 eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 455555555555421 123333333333333334 67777777777765544 4555666666666667
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc--------
Q 011905 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG-QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK-------- 426 (475)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-------- 426 (475)
+++++++.++++.+... -+...|+.-...+.+.| ..+++.+.++++.+... .+...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 124 NWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---SNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC---CCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC---CCccHHHHHHHHHHhhcccccccc
Confidence 56777777777776542 35566666555566666 77777777777776542 3667777666665542
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhH
Q 011905 427 ------NHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEEL 466 (475)
Q Consensus 427 ------g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (475)
+.++++++++++++... |-+...|......+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56789999999999887 7788888888888888877555
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00014 Score=67.09 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLI 313 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 313 (475)
..+|..+..+|.+.|++++|++.+++..+.. +.+...|..+..+|...|++++|++.|++..+.. +.+...+..+.
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4455555666666666666666666665532 2345555556666666666666666666655542 12344445555
Q ss_pred HHHHhcCCHHHHH
Q 011905 314 KGFCVEGNLDEAY 326 (475)
Q Consensus 314 ~~~~~~~~~~~a~ 326 (475)
.++...++.+++.
T Consensus 349 ~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 349 KVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00026 Score=55.61 Aligned_cols=96 Identities=9% Similarity=-0.037 Sum_probs=69.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPD-------------GLACSVMIRELCLGGQVLEGFCLYEDIEKI----- 405 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----- 405 (475)
+......+.+.|++++|+..|++.++. .|+ ...|..+-.++.+.|++++|+..+++..+.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 444555566667777777777766653 222 226777777888888888888888888875
Q ss_pred CCCCCCchhhH----HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 406 GFLSSVDSDIH----SVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 406 ~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.+. +.+...| .....++...|++++|++.|++.++.
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 112 3467788 88899999999999999999998864
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00011 Score=70.14 Aligned_cols=128 Identities=13% Similarity=0.014 Sum_probs=87.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 011905 315 GFCVEGNLDEAYQLIDKVVAG---GSVS----SGGCYSSLVVELVRTKRLKEAEKLFSKMLAS-----GV-KPD-GLACS 380 (475)
Q Consensus 315 ~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~~~ 380 (475)
.+...|++++|+.++++.++. -+.+ ...+++.|...|...|++++|..++++.++. |- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888887776542 1111 2456888888888888888888888776532 21 232 35677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 381 VMIRELCLGGQVLEGFCLYEDIEK-----IGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.|...|...|++++|+.++++..+ .|...+....+.+.+..++...+++++|..+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888887764 24332223445566677777888888888888888763
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.85 E-value=9.5e-05 Score=54.61 Aligned_cols=93 Identities=10% Similarity=-0.050 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------h
Q 011905 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQ------G 448 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~ 448 (475)
+...+..+...+...|++++|...+++..+.. +.+...|..+..++.+.|++++|++.+++.++.. +.+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHH
Confidence 34456666667777788888888888777754 2356777777788888888888888888887665 333 5
Q ss_pred hhHHHHHHHHHhcCCHhHHhhcc
Q 011905 449 PYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
..+..+..++...|+.+.+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHH
Confidence 55666677777777666665443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00016 Score=69.06 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=41.7
Q ss_pred HHhcCChHHHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHH
Q 011905 244 ICRLGSMERALELLGEMEKE-----GGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL-----G-CAP-NRVTIST 311 (475)
Q Consensus 244 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~ 311 (475)
+...|++++|+.++++..+. |...+....+++.+..+|...|++++|..++++..+. | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666555432 1111112344555555666666666666555544321 1 011 1233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 011905 312 LIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 312 li~~~~~~~~~~~a~~~~~~~ 332 (475)
|...|...|++++|..++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 445555555555555544443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00033 Score=55.98 Aligned_cols=96 Identities=15% Similarity=0.018 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHhccC--------C---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 166 IYNNVIRLFCEKGDMIAADELMKGMGLI--------D---------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 166 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
.+......+.+.|+++.|+..|.+.... . -+.+...|..+..++.+.|++++|+..++...+.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444555555566666666555554432 0 0112234555555555566666666666555554
Q ss_pred CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 229 GCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
. +.+...|..+..+|...|++++|...|++...
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 3 22455555555566666666666666665555
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0012 Score=51.03 Aligned_cols=110 Identities=14% Similarity=0.019 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGF 396 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 396 (475)
++++|.+.|++..+.|.. + .. |...|...+.+++|++.|++..+.| +...+..|-..|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 455666666666665522 1 12 4445555556666666666666553 34455555555555 56777777
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 011905 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCR----KNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 443 (475)
+.|++..+.| +...+..+...|.. .+++++|.++|++..+.|
T Consensus 82 ~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN-----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777776654 44556666666666 667777777777777665
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.72 E-value=8.4e-05 Score=67.78 Aligned_cols=131 Identities=17% Similarity=0.044 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------------------hHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 306 RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGG------------------CYSSLVVELVRTKRLKEAEKLFSKM 367 (475)
Q Consensus 306 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------------------~~~~li~~~~~~g~~~~A~~~~~~m 367 (475)
...+..+...+.+.|++++|...|++.+... |+.. +|..+..+|.+.|++++|+..+++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556677777888899999999999887754 3222 4555555566666666666666665
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 011905 368 LASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG-LCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 368 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 442 (475)
++.. ..+...+..+..+|...|++++|...|+++.+.. | .+...+..+... ....+..+++.++|++|...
T Consensus 257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p-~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--P-DDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 5432 1234555555556666666666666666555432 1 133344444333 22334455555555555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0011 Score=51.38 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=5.9
Q ss_pred CChHHHHHHHHHHHh
Q 011905 248 GSMERALELLGEMEK 262 (475)
Q Consensus 248 g~~~~a~~~~~~~~~ 262 (475)
+++++|.+.|++..+
T Consensus 75 ~d~~~A~~~~~~Aa~ 89 (138)
T 1klx_A 75 KDLRKAAQYYSKACG 89 (138)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHc
Confidence 334444444443333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00056 Score=48.14 Aligned_cols=81 Identities=11% Similarity=-0.009 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
..+..+...+...|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.+++.+... +.+...+..+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 445555556666677777777777666653 1245666667777777777777777777777665 445555665555
Q ss_pred HHHhc
Q 011905 457 HLKKS 461 (475)
Q Consensus 457 ~~~~~ 461 (475)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0009 Score=52.54 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc-------CCCCCCcHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKE-------GGDCSPNVVTY----TSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
.|..+..++.+.|++++|+..+++..+. . +-+...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~---pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN---QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT---STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC---CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666777777777777777666653 2 2344455 6666666666777777766666543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00022 Score=65.03 Aligned_cols=95 Identities=13% Similarity=-0.038 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG-LACSVMIRE- 385 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~- 385 (475)
.|..+..+|.+.|++++|...++..++.+.. +...|..+..+|...|++++|...|++..+. .|+. ..+..+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 4455555555666666666666655554321 3455555666666666666666666655532 3332 222222222
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 011905 386 LCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~ 405 (475)
....+..+.+...|+.+...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 12234455555556555543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0026 Score=62.16 Aligned_cols=174 Identities=6% Similarity=-0.042 Sum_probs=118.3
Q ss_pred cCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCC----------HHHHHHHHHhcccCCCCCCHhhHHHHHHHHHh
Q 011905 107 KQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARL----------ANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCE 176 (475)
Q Consensus 107 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 176 (475)
....++|++.++.+...+ +-+..+|+.--.++...|+ ++++++.++.+.+.. +-+..+|+.-.-++.+
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 344567777777777765 4455666655555555555 788888888887755 3467778777777777
Q ss_pred cC--ChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc------
Q 011905 177 KG--DMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG-RLEDACGLFKVMKRHGCAANLVAYSALLDGICRL------ 247 (475)
Q Consensus 177 ~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~------ 247 (475)
.| +++++++.++++.+.. +-+...|+.-...+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccc
Confidence 77 6688888888887765 456777777766677777 778888888887776533 666776666555542
Q ss_pred --------CChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCH
Q 011905 248 --------GSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMM 287 (475)
Q Consensus 248 --------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 287 (475)
+.++++++.+++..... +-+...|+-.-..+.+.++.
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~---P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD---PNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC---SSCSHHHHHHHHHHSCCCCC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC---CCCccHHHHHHHHHhcCCCc
Confidence 45677888887777643 44666777666666666553
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0012 Score=48.99 Aligned_cols=79 Identities=14% Similarity=-0.035 Sum_probs=45.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 360 AEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 360 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...|..+..+|...|++++|.+.|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555432 1234555555556666666666666666666543 124555666666666666666666666666
Q ss_pred HHc
Q 011905 440 LKK 442 (475)
Q Consensus 440 ~~~ 442 (475)
+..
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00062 Score=53.35 Aligned_cols=102 Identities=12% Similarity=-0.034 Sum_probs=61.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ----------VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
+.+++++|.+.+++..+.. +-+...|..+-.++...++ +++|+..|++..+.. +.+..+|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld---P~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC---cCcHHHHHHHHHH
Confidence 4445566666666665542 2244555555555555444 447777777777754 2356677777777
Q ss_pred HHhcC-----------CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011905 423 LCRKN-----------HSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKK 460 (475)
Q Consensus 423 ~~~~g-----------~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 460 (475)
|...| ++++|++.|+++++.. |+...|...+....+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~--P~~~~y~~al~~~~k 136 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ--PDNTHYLKSLEMTAK 136 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHT
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHh
Confidence 76653 7888888888887775 555555555544433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00058 Score=50.21 Aligned_cols=59 Identities=8% Similarity=-0.004 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 167 YNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226 (475)
Q Consensus 167 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 226 (475)
+..+...+...|++++|.+.|++..... +.+...+..+..++...|++++|+..+++..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3334444444444444444444433322 2233333334444444444444444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0014 Score=48.60 Aligned_cols=62 Identities=11% Similarity=0.068 Sum_probs=27.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 011905 199 IITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEME 261 (475)
Q Consensus 199 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 261 (475)
...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444444432 1133344444444444444444444444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.023 Score=58.38 Aligned_cols=194 Identities=15% Similarity=0.054 Sum_probs=100.2
Q ss_pred HHHhcCCHHHHHH-HHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011905 208 GFCNAGRLEDACG-LFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 208 ~~~~~~~~~~a~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
.....+++++|.+ ++..+ ++......++..+.+.|.+++|+++.+.-.. -.......|+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~--------------~f~~~l~~~~ 667 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQDQ--------------KFELALKVGQ 667 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHH--------------HHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcch--------------heehhhhcCC
Confidence 3345666776655 43111 1122225666666777777777655421111 1223345677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 287 MKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSK 366 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 366 (475)
+++|+++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...|...|+.+...++.+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 77777665432 2456677777777777777777776665532 44455555555555544443333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011905 367 MLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWL 446 (475)
Q Consensus 367 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 446 (475)
.. ..|+++.|...+-.. | -+...++.|.+.+++++|..+-+. . .|
T Consensus 733 a~-------------------~~~~~~~A~~~~~~~---g--------~~~~a~~~~~~~~~~~~A~~lA~~---~--~~ 777 (814)
T 3mkq_A 733 AE-------------------TTGKFNLAFNAYWIA---G--------DIQGAKDLLIKSQRFSEAAFLGST---Y--GL 777 (814)
T ss_dssp HH-------------------HTTCHHHHHHHHHHH---T--------CHHHHHHHHHHTTCHHHHHHHHHH---T--TC
T ss_pred HH-------------------HcCchHHHHHHHHHc---C--------CHHHHHHHHHHcCChHHHHHHHHH---h--CC
Confidence 32 233333333332211 1 023334445556666666665443 2 34
Q ss_pred Ch----hhHHHHHHHHHhcCCHhHHhhcc
Q 011905 447 QG----PYVDKIVEHLKKSGDEELITNLP 471 (475)
Q Consensus 447 ~~----~~~~~l~~~~~~~g~~~~a~~l~ 471 (475)
.. .........+...|+.+.|..+.
T Consensus 778 ~~~~i~~~~~~~~~~L~~~~~~~~a~~l~ 806 (814)
T 3mkq_A 778 GDNEVNDIVTKWKENLILNGKNTVSERVC 806 (814)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHTTBC
T ss_pred ChHHHHHHHHHHHHHHHhccchhHHHhhC
Confidence 44 55566666677777766666554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0057 Score=62.87 Aligned_cols=124 Identities=14% Similarity=0.063 Sum_probs=68.8
Q ss_pred HHHhcCCHHHHHH-HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 138 LCEKARLANEAMW-VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 138 ~~~~~~~~~~A~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
.....+++++|.+ ++..+. +......++..+.+.|..+.|+++.++- . .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCHH
Confidence 3345677777766 443322 1222366666677777777777654211 0 1123345567777
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 217 DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 217 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
+|.++.+.+ .+...|..+...+.+.|+++.|++.|..+.. |..+...+...|+.+...++-+.
T Consensus 670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 777665432 2566777777777777777777777776543 23344444445555544444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0018 Score=45.37 Aligned_cols=60 Identities=13% Similarity=0.254 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444444444444444444444332 11334444444444445555555555544444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0015 Score=47.15 Aligned_cols=85 Identities=9% Similarity=-0.040 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCChhhHHH
Q 011905 375 DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRI-WLQGPYVDK 453 (475)
Q Consensus 375 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ 453 (475)
+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|.+.+++.++... .++......
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 82 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD---PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence 34555566666666677777777777666654 12455666677777777777777777766665421 244444444
Q ss_pred HHHHHHhcC
Q 011905 454 IVEHLKKSG 462 (475)
Q Consensus 454 l~~~~~~~g 462 (475)
+...+.+.+
T Consensus 83 l~~~l~~~~ 91 (100)
T 3ma5_A 83 LQDAKLKAE 91 (100)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcc
Confidence 444444433
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00089 Score=52.45 Aligned_cols=85 Identities=11% Similarity=-0.046 Sum_probs=42.3
Q ss_pred cCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChh----------HHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011905 142 ARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMI----------AADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 142 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~----------~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 211 (475)
.+.+++|.+.++...+.. +.+...|+.+..++...++++ +|+..|++..+.+ +.+...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 344556666666555543 235555555555555555433 5555555554432 2234445555555544
Q ss_pred cC-----------CHHHHHHHHHHHHHC
Q 011905 212 AG-----------RLEDACGLFKVMKRH 228 (475)
Q Consensus 212 ~~-----------~~~~a~~~~~~m~~~ 228 (475)
.| ++++|++.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 32 455555555554443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0022 Score=46.31 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=31.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMK 226 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 226 (475)
+...+..+..++...|++++|++.|++..+.. +.+...|..+..++...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444455555555555555555555554432 2233444555555555555555555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.003 Score=59.24 Aligned_cols=88 Identities=8% Similarity=-0.164 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCchhhHHHHHH
Q 011905 354 TKRLKEAEKLFSKMLAS---GVKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKI-----GFLSSVDSDIHSVLLL 421 (475)
Q Consensus 354 ~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~li~ 421 (475)
.|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|+.++++..+. |...+.-..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46777777777776541 11222 356777778888888888888888876642 3332234566888888
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 011905 422 GLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~ 441 (475)
.|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888888775
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0049 Score=57.81 Aligned_cols=94 Identities=10% Similarity=-0.078 Sum_probs=66.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCCchhh
Q 011905 348 VVELVRTKRLKEAEKLFSKMLASG---VKPD----GLACSVMIRELCLGGQVLEGFCLYEDIEKI-----GFLSSVDSDI 415 (475)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~---~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~ 415 (475)
+..+.+.|++++|+.++++.++.. +.|+ ..+++.|..+|...|++++|+.++++..+. |...+.-..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888888776531 1222 356777888888888888888888877642 3322234566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 416 HSVLLLGLCRKNHSVEAAKLARFMLK 441 (475)
Q Consensus 416 ~~~li~~~~~~g~~~~A~~~~~~m~~ 441 (475)
++.|...|...|++++|..+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888889999999999998888774
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0076 Score=56.46 Aligned_cols=61 Identities=10% Similarity=-0.082 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 272 VTYTSVIQIFCGKGMMKEALGILDRMEAL-----G-CAPN-RVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 332 (475)
.+++.+..+|...|++++|+.++++..+. | -.|+ ..+++.|...|...|++++|..++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34444444444444444444444443211 1 0111 233444555555555555555555444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.019 Score=40.82 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=28.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 349 VELVRTKRLKEAEKLFSKMLASGVKPDGL-ACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
..+...|++++|...|++..+.. ..+.. .+..+..++...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34445555555555555555432 11233 4444555555555555555555555554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.058 Score=48.64 Aligned_cols=74 Identities=11% Similarity=-0.098 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 373 KPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
..+...+..+...+...|++++|...++++...+ | +...|..+...+.-.|++++|.+.++++...+ |...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~--s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--M--SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHH
Confidence 4456667666666666688888888888888775 3 55566666777777888888888888877775 4545543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.13 Score=38.36 Aligned_cols=63 Identities=14% Similarity=0.049 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
.+..+..+...|+-+.-.+++..+.. +.+|++...-.+..||.+.|+..+|.+++.++-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 44444555555555555555555432 2244555555555555555555555555555555553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.053 Score=48.87 Aligned_cols=70 Identities=19% Similarity=0.106 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 011905 305 NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLA 378 (475)
Q Consensus 305 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 378 (475)
+..+|..+...+...|++++|...+++.+..+ |+...|..+...+.-.|++++|.+.|++.... .|...+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 44455554444444555555555555555544 34444444455555555555555555555533 344444
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.013 Score=54.84 Aligned_cols=61 Identities=16% Similarity=0.114 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 272 VTYTSVIQIFCGKGMMKEALGILDRMEAL-----G-CAP-NRVTISTLIKGFCVEGNLDEAYQLIDKV 332 (475)
Q Consensus 272 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~ 332 (475)
.+++.+..+|...|++++|+.++++.... | ..| ...+++.|...|...|++++|..++++.
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34444444444444444444444443211 1 111 1233444555555555555555555444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.045 Score=38.61 Aligned_cols=67 Identities=12% Similarity=-0.037 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 374 PDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 374 p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|...+..+..++...++ .++|..++++..+.. +.+......+...+.+.|++++|+..|+++++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d---p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE---PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC---cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 345556666666544433 678888888888765 3467777777788888888888888888888775
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.25 Score=39.20 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=58.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCH
Q 011905 136 FNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRL 215 (475)
Q Consensus 136 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~ 215 (475)
+....+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34455566666666666554 2455677777777777777777777666543 33444445555666
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011905 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
++..++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55555544444433 1233344444556666666666443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.26 Score=36.83 Aligned_cols=139 Identities=9% Similarity=0.111 Sum_probs=78.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHH
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEA 290 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 290 (475)
-.|..++..++..+..+. .+..-||.+|.-....-+-+...++++.+-+- -|.. ..|+....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-----FDis----------~C~NlKrV 80 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-----FDLD----------KCQNLKSV 80 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-----SCGG----------GCSCTHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-----cCcH----------hhhcHHHH
Confidence 456677777777766654 25556666666666666666666666665542 1211 12222222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 291 LGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 291 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
..-+-.+- -+...+...+..+...|+-|.-.+++.++.. +..|++.....+..+|.+.|+..+|.+++.+.-+.
T Consensus 81 i~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 22222111 1334455556666677777777777776544 33445566666777777777777777777777666
Q ss_pred CCC
Q 011905 371 GVK 373 (475)
Q Consensus 371 ~~~ 373 (475)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.36 Score=38.34 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
...|..|.....+.|+++-|++.|.+.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444444444444444433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.055 Score=41.84 Aligned_cols=85 Identities=22% Similarity=0.174 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHH
Q 011905 357 LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG---QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAA 433 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 433 (475)
...+.+-|.+..+.|. ++..+...+..++++.+ +.+++..+++++.+.. .|..+...+..+..++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455556665555553 56666666666777766 5567777777777754 12123556666677777888888888
Q ss_pred HHHHHHHHcC
Q 011905 434 KLARFMLKKR 443 (475)
Q Consensus 434 ~~~~~m~~~~ 443 (475)
++++.+++..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 8888887775
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.021 Score=40.61 Aligned_cols=53 Identities=19% Similarity=0.246 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 209 FCNAGRLEDACGLFKVMKRHGCAANLV-AYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+...|++++|...++...+.. +.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444332 11233 344444444444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.16 Score=35.69 Aligned_cols=46 Identities=11% Similarity=-0.018 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 216 EDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
++|..++++..+... -++.....+...+.+.|++++|...|+++.+
T Consensus 26 ~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444444444444321 1333344444444444444444444444444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.2 Score=36.03 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 413 SDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 413 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..++..+..++.+.|++++|..+++++++..
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 3445555555555555555555555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.11 Score=40.07 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEG---NLDEAYQLIDKVVAGGSVS--SGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~ 363 (475)
.+.+-|.+..+.|. ++..+...+.-++++.+ +++++..++++..+.+ .| +...+..+.-+|.+.|++++|.+.
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444443 45556556666666666 4556777777766654 12 234455556666777777777777
Q ss_pred HHHHHHCCCCCC
Q 011905 364 FSKMLASGVKPD 375 (475)
Q Consensus 364 ~~~m~~~~~~p~ 375 (475)
++.+++. .|+
T Consensus 94 ~~~lL~i--eP~ 103 (152)
T 1pc2_A 94 VRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHH--CTT
T ss_pred HHHHHhc--CCC
Confidence 7777754 554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.3 Score=35.05 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
...+..+..+|.+.|+++.|...++++.+
T Consensus 46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 46 VSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444455555555555555555555444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.88 E-value=5.2e-05 Score=69.67 Aligned_cols=117 Identities=11% Similarity=0.050 Sum_probs=61.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHH
Q 011905 129 VKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKG 208 (475)
Q Consensus 129 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 208 (475)
+..|..|..+..+.+++.+|++-|- +. -|+..|..++.+..+.|.+++-.+++...++.. .+...=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 3455556666665555555544331 11 245556666666666666666666665554432 222333456666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011905 209 FCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 209 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
|++.++..+..+++. .||..-...+.+-|...|.++.|.-+|..+
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 666666544332221 244444455566666666666666555544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.39 Score=41.57 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc-C
Q 011905 357 LKEAEKLFSKMLASGVKPD---GLACSVMIRELCL-----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK-N 427 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g 427 (475)
...|...+++.++. .|+ ...|..+...|.. .|+.++|.+.|++..+.+. ..+..++....+.+++. |
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcC
Confidence 34455555555543 344 3455555555555 3677777777777666532 11355566666666663 6
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 011905 428 HSVEAAKLARFMLKKRIW 445 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~~~ 445 (475)
+.++|.+.+++.+.....
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 677777777777666544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.74 Score=35.23 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=72.7
Q ss_pred ChhhHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHHHHcC
Q 011905 340 SGGCYSSLVVELVRTKRL------KEAEKLFSKMLASGVKPDG----LACSVMIR---ELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 340 ~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~----~~~~~li~---~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
|..+|-..+....+.|++ ++..++|++.... ++|+. ..|-.|.- .+...+++++|+++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 344555555555555666 6666677766553 33432 11111111 1123478999999999998763
Q ss_pred CCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011905 407 FLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLK 459 (475)
Q Consensus 407 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~ 459 (475)
+ . =...|-.....-.+.|+.+.|.+++...+..+ +.+...++..++-+.
T Consensus 91 -K-k-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 91 -K-K-FAFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALRNLN 139 (161)
T ss_dssp -T-T-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHHHHH
T ss_pred -H-H-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHHhhh
Confidence 2 1 26667777777778999999999999999887 556667776666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.27 E-value=0.48 Score=35.16 Aligned_cols=89 Identities=21% Similarity=0.133 Sum_probs=55.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLE---GFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS 429 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 429 (475)
.......+.+-|.+....|. |+..+-..+..++.+..+... ++.+++++.+.+ .|.........+..++.+.|++
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 33344555555655554442 666666666666776665554 777777776653 1112445555666777788888
Q ss_pred HHHHHHHHHHHHcC
Q 011905 430 VEAAKLARFMLKKR 443 (475)
Q Consensus 430 ~~A~~~~~~m~~~~ 443 (475)
++|.++++.+++..
T Consensus 91 ~~A~~~~~~lL~~e 104 (126)
T 1nzn_A 91 EKALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888887775
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.08 E-value=3.9 Score=38.29 Aligned_cols=190 Identities=13% Similarity=0.134 Sum_probs=98.9
Q ss_pred CChhHHHHHHHHhcc-----CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHH----Hhc
Q 011905 178 GDMIAADELMKGMGL-----IDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH-GCAANLVAYSALLDGI----CRL 247 (475)
Q Consensus 178 g~~~~a~~~~~~m~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~----~~~ 247 (475)
|+++.|++.+..+.+ .+..........++..|...|+++...+.+..+.+. |..+. ....++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 677777777655532 223344556777888888888888887777666543 32222 223333322 222
Q ss_pred CChHHHH--HHHHHHHhc-CCCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHH
Q 011905 248 GSMERAL--ELLGEMEKE-GGDCSP---NVVTYTSVIQIFCGKGMMKEALGILDRMEAL--GCAPN---RVTISTLIKGF 316 (475)
Q Consensus 248 g~~~~a~--~~~~~~~~~-~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~ 316 (475)
...+... .+.+..... ...+-. .......|...+...|++.+|.+++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 2222211 111111110 000001 1122344566677777777777777776532 21111 23455566677
Q ss_pred HhcCCHHHHHHHHHHHHh----CCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 317 CVEGNLDEAYQLIDKVVA----GGSVSS--GGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 317 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
...+++..|..+++.+.. ....|+ ...|...+..+...+++.+|.+.|.+..+
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 777777777777766532 122222 23455566666667777777766666543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.96 E-value=1.1 Score=34.37 Aligned_cols=98 Identities=10% Similarity=-0.023 Sum_probs=46.0
Q ss_pred CHhhHHHHHHHHHhcCCh------hHHHHHHHHhccCCCCCChh-hHHHHHHHH------HhcCCHHHHHHHHHHHHHCC
Q 011905 163 DTIIYNNVIRLFCEKGDM------IAADELMKGMGLIDLYPDII-TYVSMIKGF------CNAGRLEDACGLFKVMKRHG 229 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~~~~~~~~-~~~~li~~~------~~~~~~~~a~~~~~~m~~~g 229 (475)
|..+|-..+...-+.|+. ++..++|++... .++|+.. .|...+..+ ...+|.++|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia-~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE-ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH-HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH-cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555555 555555555544 2233321 111111111 12255555666666554432
Q ss_pred CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 230 CAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 230 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
-.- ...|......-.+.|++..|.+++.....
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 222 44444444555556666666666665555
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=2.1 Score=39.28 Aligned_cols=69 Identities=9% Similarity=-0.074 Sum_probs=36.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHH
Q 011905 382 MIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVDK 453 (475)
Q Consensus 382 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~ 453 (475)
++.++...|+.+++...++.+.... +.+...|..++.++.+.|+..+|++.|+.+.+ .|+.|++.+-..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 4444555556666655555555443 23455556666666666666666655555432 255555554443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.82 E-value=4.2 Score=38.04 Aligned_cols=246 Identities=12% Similarity=0.048 Sum_probs=134.5
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH----H
Q 011905 212 AGRLEDACGLFKVMKRH-----GCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIF----C 282 (475)
Q Consensus 212 ~~~~~~a~~~~~~m~~~-----g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~----~ 282 (475)
.|++++|++.+..+.+. ...........++..|...|+++...+.+..+... .+..+... ..++..+ .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskk-r~qlk~ai--~~~V~~~~~~l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKK-HGQLKLSI--QYMIQKVMEYLK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTT-TTTSHHHH--HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hhhhHHHH--HHHHHHHHHHHh
Confidence 36788888877666542 23445677888999999999999988888777654 23333322 2333322 2
Q ss_pred hcCCHHHHH--HHHHHHHH--cC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHH
Q 011905 283 GKGMMKEAL--GILDRMEA--LG-CAP---NRVTISTLIKGFCVEGNLDEAYQLIDKVVAG--GSVSS---GGCYSSLVV 349 (475)
Q Consensus 283 ~~g~~~~a~--~~~~~m~~--~~-~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~ 349 (475)
.....+... .+.+.... .| +-. .......|...+...|++.+|.+++.++... +.... ...+...++
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222222211 11111110 01 111 1122356677788888888888888887642 22211 245667777
Q ss_pred HHHhcCCHHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhH----HHH
Q 011905 350 ELVRTKRLKEAEKLFSKMLA----SGVKPDG--LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIH----SVL 419 (475)
Q Consensus 350 ~~~~~g~~~~A~~~~~~m~~----~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~~l 419 (475)
.|...+++..|..++++... ....|+. ..+...+..+...+++.+|.+.|.++.+..... .+...+ ..+
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~-~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK-SDEAKWKPVLSHI 264 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc-CCHHHHHHHHHHH
Confidence 88888888888888877642 2222221 344555666677788888877777776532110 122222 222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011905 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
+.+..-.+....-..++........-++...+..+..+|...
T Consensus 265 v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 265 VYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhc
Confidence 222233344444444444444443334455666667666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=1 Score=38.92 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHhcCCCCCC--cHHHHHHHHHHHHhc-
Q 011905 216 EDACGLFKVMKRHGCAAN---LVAYSALLDGICRL-----GSMERALELLGEMEKEGGDCSP--NVVTYTSVIQIFCGK- 284 (475)
Q Consensus 216 ~~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~- 284 (475)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++..+.+ | +..++......++..
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln----P~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC----SAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC----CTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC----CCCCchHHHHHHHHHHHhc
Confidence 3444444444443 233 33455555555552 55555555555555422 2 133444444444442
Q ss_pred CCHHHHHHHHHHHHHcC
Q 011905 285 GMMKEALGILDRMEALG 301 (475)
Q Consensus 285 g~~~~a~~~~~~m~~~~ 301 (475)
|+.+++.+.+++.....
T Consensus 254 gd~~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 254 NNRAGFDEALDRALAID 270 (301)
T ss_dssp TCHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHcCC
Confidence 55555555555555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.00046 Score=63.63 Aligned_cols=186 Identities=10% Similarity=-0.001 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011905 93 SSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 172 (475)
++..|..++....+.+.++..+..+...++..-.|. .=+.|+-+|++.++..+-.++ .. .||..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~~rL~elEef----l~---~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTSCSSSTTTST----TS---CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhhCcHHHHHHH----Hc---CCCcccHHHHHH
Confidence 455677888899999999999998887776544443 344688899999886554332 22 367666777888
Q ss_pred HHHhcCChhHHHHHHHHhccCC--------------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCc
Q 011905 173 LFCEKGDMIAADELMKGMGLID--------------------LYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~--------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 232 (475)
-|...|.++.|.-+|..+.... -..+..||..+-.+|...+++.-|.-.--.++-.
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---- 228 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---- 228 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC----
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc----
Confidence 8888888888877776653321 0235667777777777777766554433333321
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011905 233 NLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDR 296 (475)
Q Consensus 233 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 296 (475)
..-...++..|-+.|.+++-+.+++.-.... ......|+-|.-.|++- ++++..+-++.
T Consensus 229 -adeL~elv~~YE~~G~f~ELIsLlEaglglE---rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 229 -ADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp -SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST---TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 1122345666777788888887777766422 35666777777666664 44544444433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.18 E-value=0.65 Score=34.47 Aligned_cols=80 Identities=18% Similarity=0.125 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDE---AYQLIDKVVAGGSV-SSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (475)
+.+-|......|. ++..+-..+.-++.+...... +..+++++.+.+.+ -.......|.-++.+.|++++|.+.++
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3334433333332 444554455555555554443 66666665554311 122333444555666666666666666
Q ss_pred HHHHC
Q 011905 366 KMLAS 370 (475)
Q Consensus 366 ~m~~~ 370 (475)
.+++.
T Consensus 99 ~lL~~ 103 (126)
T 1nzn_A 99 GLLQT 103 (126)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66644
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.85 Score=45.57 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=76.5
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHhccCCCCCChhhH--HHHHHHHHhcCC-HHHHHHHHHHHHHC------CCC-cCH---
Q 011905 169 NVIRLFCEKGD-MIAADELMKGMGLIDLYPDIITY--VSMIKGFCNAGR-LEDACGLFKVMKRH------GCA-ANL--- 234 (475)
Q Consensus 169 ~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~--~~li~~~~~~~~-~~~a~~~~~~m~~~------g~~-~~~--- 234 (475)
.++..+...++ .+.|..+|+++.... |...++ ..++..+...++ --+|.+++.+..+. ... .+.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 34444444555 577899999887653 433332 233333333332 22455555444321 111 111
Q ss_pred -------HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 235 -------VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 235 -------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
.....-.+.+...|+++.|+++-++..... |.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223455667899999999999988742 4568899999999999999999999988773
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.69 E-value=3.4 Score=44.04 Aligned_cols=149 Identities=11% Similarity=0.083 Sum_probs=93.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------------
Q 011905 168 NNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC----------------- 230 (475)
Q Consensus 168 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----------------- 230 (475)
..++..+.+.+..+.+.++..-.. .+....-.+..++...|++++|.+.|++... |+
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence 345556666677666666544332 2233333455666677777777777755321 11
Q ss_pred ------CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 231 ------AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPN--VVTYTSVIQIFCGKGMMKEALGILDRMEALGC 302 (475)
Q Consensus 231 ------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 302 (475)
..-..-|..++..+.+.|.++.+.++-....+....-.++ ...|..+...+...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 1112346778888889999999988887766532111222 22578888999999999999999888876544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH
Q 011905 303 APNRVTISTLIKGFCVEGNLDE 324 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~~~~~~ 324 (475)
+ ...+..|+...|..|..+.
T Consensus 970 r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHH
T ss_pred H--HHHHHHHHHHHHhCCChhh
Confidence 3 3456677777776665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.45 E-value=0.99 Score=31.67 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=54.8
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011905 101 CEMSRIKQ-NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 101 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 173 (475)
...+.+.. +.-++.+-++.+....+.|++....+.+++|.+.+++..|+.+|+.++..- .....+|..+++-
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lqE 88 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 88 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHHH
Confidence 33444444 566777888888888899999999999999999999999999999887542 2345567777653
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.17 E-value=2.3 Score=45.35 Aligned_cols=185 Identities=8% Similarity=-0.003 Sum_probs=116.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC---------------
Q 011905 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAG----GS--------------- 337 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--------------- 337 (475)
++..+...+..+-+.++..- ++.+...--.+..+|...|++++|.+.|.+.... +.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 44445556666555544332 2224444455667788899999999999764211 00
Q ss_pred ---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 011905 338 ---VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG----LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSS 410 (475)
Q Consensus 338 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 410 (475)
..-..-|..++..+.+.+.++.+.++-...++..-.-+. ..|..+..++...|++++|...+-.+.....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--- 969 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--- 969 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS---
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH---
Confidence 001134777888888999999999888877653212121 2577888889999999999888887776543
Q ss_pred CchhhHHHHHHHHHhcCCHHHHHH------------HHHHHH-Hc-CCCCChhhHHHHHHHHHhcCCHhHHhhc
Q 011905 411 VDSDIHSVLLLGLCRKNHSVEAAK------------LARFML-KK-RIWLQGPYVDKIVEHLKKSGDEELITNL 470 (475)
Q Consensus 411 ~~~~~~~~li~~~~~~g~~~~A~~------------~~~~m~-~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~l 470 (475)
-......+|..+|..|..+.-.. ++..-. .. .+...+..|..|..-....|++..|-.+
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAI 1042 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHH
Confidence 45678888888887776655432 222211 11 2233446778888888888877666443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=1.2 Score=40.86 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 011905 236 AYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEA-----LGCAPNRVT 308 (475)
Q Consensus 236 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~ 308 (475)
+...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+.... .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34456677778888888888888777643 45777888888888888888888888877643 477777654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.90 E-value=3.2 Score=41.53 Aligned_cols=51 Identities=12% Similarity=-0.064 Sum_probs=31.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 386 LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 386 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
|...|+++.|+++-++....- +.+-.+|..|..+|...|+++.|+-.++-+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a---PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA---LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC---chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445566666666666666542 235666666666666666666666655544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=14 Score=36.22 Aligned_cols=252 Identities=10% Similarity=0.001 Sum_probs=119.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhc
Q 011905 133 KVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNA 212 (475)
Q Consensus 133 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 212 (475)
+.-+..+.+.+++...+.++.. . +.+...-.....+....|+...|......+-..| ......+..++..+.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~----p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~ 149 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-K----PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRAS 149 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-C----CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHhccC-C----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHC
Confidence 4455667777777777765543 1 3455555556677777888777777776665544 44556667777777765
Q ss_pred CCHH--HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHH--------------
Q 011905 213 GRLE--DACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTS-------------- 276 (475)
Q Consensus 213 ~~~~--~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------------- 276 (475)
|.+. ...+=++.+...| +...-..++..+ . .......+.+..+... +++......
T Consensus 150 g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~----p~~~~~~~~~~~~~~~~~~~~~~ 220 (618)
T 1qsa_A 150 GKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN----PNTVLTFARTTGATDFTRQMAAV 220 (618)
T ss_dssp TCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC----GGGHHHHHHHSCCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC----hHhHHHHHhccCCChhhHHHHHH
Confidence 5533 2333333333433 222222222211 1 1111111222233331 122221110
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011905 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGF----CVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELV 352 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 352 (475)
.+.-+.+ .+.+.|...+....... ..+......+-... ...+...++...+........ +.....-.+....
T Consensus 221 ~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Al 296 (618)
T 1qsa_A 221 AFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMAL 296 (618)
T ss_dssp HHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHH
Confidence 1111222 35666776666665432 12222222222222 222323445555555443322 2222223333344
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEK 404 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 404 (475)
+.|+++.|...|+.|..... ....-.--+.+++...|+.++|..+|+.+..
T Consensus 297 r~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 297 GTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 56777777777776654211 1223233344555666777777777777654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.39 E-value=1.8 Score=32.25 Aligned_cols=72 Identities=14% Similarity=0.144 Sum_probs=55.1
Q ss_pred HHHHHhcC-ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHH
Q 011905 101 CEMSRIKQ-NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRL 173 (475)
Q Consensus 101 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 173 (475)
...+.+.. |.-+..+-++.+....+.|++....+.+.+|.+.+++..|+.+|+-++.+- .+....|..+++-
T Consensus 59 ~~~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 59 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 33444444 556677788888888999999999999999999999999999999887642 3445567777653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.96 E-value=3.2 Score=29.17 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34445555555555566666666666666666666666666666666654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.91 E-value=19 Score=36.93 Aligned_cols=258 Identities=14% Similarity=0.070 Sum_probs=139.7
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CcCHHHHHHHHHH
Q 011905 173 LFCEKGDMIAADELMKGMGLIDLYPDIIT--YVSMIKGFCNAGRLEDACGLFKVMKRHGC-------AANLVAYSALLDG 243 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~-------~~~~~~~~~ll~~ 243 (475)
+....|+.++++.+++.....+-..+..+ =..+.-+....|..+++..++.......- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45677888888888877664210122222 22333445566666677777776655321 0112222333333
Q ss_pred HHhcCC-hHHHHHHHHHHHhcCCCCCCcHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHh
Q 011905 244 ICRLGS-MERALELLGEMEKEGGDCSPNVVTYT--SVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK--GFCV 318 (475)
Q Consensus 244 ~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~ 318 (475)
++-.|. -+++.+.+..+.... .+...... .+...++-.|+.+....++..+.+.. +......+.- ++..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 333342 245666666666531 11111122 22333456678777778887776542 3333333333 3446
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011905 319 EGNLDEAYQLIDKVVAGGSVSSGGC--YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 319 ~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 396 (475)
.|+.+.+..+++.+.... .|.... -.++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 788888888888887642 232221 2234456778889877777888887642 223333333333455567777777
Q ss_pred HHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 011905 397 CLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHS-VEAAKLARFMLK 441 (475)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 441 (475)
++++.+.+.+ ++....-..+..+....|.. .+|+.++..+..
T Consensus 615 rlv~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7777666644 22344334444444445544 567777777764
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.45 E-value=21 Score=36.68 Aligned_cols=313 Identities=9% Similarity=-0.002 Sum_probs=168.7
Q ss_pred HHhcCCHHHHHHHHHhcccCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHhccCCC--C-----CChhhHHHHHHHH
Q 011905 139 CEKARLANEAMWVLRKMPEFDLRPD--TIIYNNVIRLFCEKGDMIAADELMKGMGLIDL--Y-----PDIITYVSMIKGF 209 (475)
Q Consensus 139 ~~~~~~~~~A~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~-----~~~~~~~~li~~~ 209 (475)
..-.|+.++++.+++.....+-..+ ...-..+.-+.+..|..+++.+++.......- . +....-..+.-+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4455677778888877654210122 22333344456667766678887776554210 0 1111112222233
Q ss_pred H--hcCCHHHHHHHHHHHHHCCCCcCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011905 210 C--NAGRLEDACGLFKVMKRHGCAANLVAYS--ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 210 ~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
+ -.++ +++.+.+..+....- +...... .|...+.-.|+-+....++..+.+.. ..+..-...+.-++...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 3 3344 456666666655321 1111122 23344556788888888888776631 122222333344555789
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 011905 286 MMKEALGILDRMEALGCAPNRVTIS---TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEK 362 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 362 (475)
+.+.+..+++.+.... .|.. -|. .+.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+
T Consensus 539 ~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 9999999988887642 2222 232 33346778899888888998888653 2234434444445556777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH--hcC-------CHHHH
Q 011905 363 LFSKMLASGVKPDGLACSVMIRELCLGGQV-LEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC--RKN-------HSVEA 432 (475)
Q Consensus 363 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g-------~~~~A 432 (475)
++..+.+.+ .|..+.-..+.-+....|.. .++...+..+... ++..+-...+.+++ -.| +....
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D-----~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~ 689 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD-----PVDFVRQAAMIALSMILIQQTEKLNPQVADI 689 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC-----SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC-----CCHHHHHHHHHHHHHHhcCCccccchHHHHH
Confidence 777666543 45555444555555555544 5677788888653 24344433333433 333 23333
Q ss_pred HHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHh
Q 011905 433 AKLARFMLKK-RIWLQGPYVDKIVEHLKKSGDEE 465 (475)
Q Consensus 433 ~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~g~~~ 465 (475)
++.+...... .-.++...-..+..+....|.-.
T Consensus 690 l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n 723 (963)
T 4ady_A 690 NKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRN 723 (963)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCc
Confidence 4434444433 22344555667777777776543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.20 E-value=6.6 Score=29.30 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 371 GVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 371 ~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+-.|+..+--.+..++.+..+ ..+++.+++++.+.+ |......+-.+..++.+.|++++|.++.+.+++..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 335666665556666666654 456788888888765 22346667777788888999999999988888775
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.29 E-value=14 Score=33.80 Aligned_cols=168 Identities=8% Similarity=-0.067 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCC---cHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHH
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSP---NVVTYTSVIQIFCGK-GMMKEALGILDRMEALGCAPNRVTI 309 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~ 309 (475)
......|...|.+.|+.++..+++.....- .+..+ .......++..+... +..+.-.++..+..+..- -...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~f 96 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPF-LSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTG-GGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHH
Confidence 456677888999999999999988877542 11112 223355667776654 344555555555543311 122233
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH
Q 011905 310 ------STLIKGFCVEGNLDEAYQLIDKVVAGGSVSS-----GGCYSSLVVELVRTKRLKEAEKLFSKMLAS--GVKPDG 376 (475)
Q Consensus 310 ------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~ 376 (475)
..++..|...|++.+|.+++..+.+.--..| ...|..-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 2577888888999999888888765311111 245666677788888888888888877542 233444
Q ss_pred HHHHHHH----HHHH-hcCCHHHHHHHHHHHH
Q 011905 377 LACSVMI----RELC-LGGQVLEGFCLYEDIE 403 (475)
Q Consensus 377 ~~~~~li----~~~~-~~g~~~~a~~~~~~~~ 403 (475)
.....+- ..+. ..+++..|...|-+..
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3322211 1234 6788888888776653
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=85.78 E-value=18 Score=31.97 Aligned_cols=168 Identities=11% Similarity=-0.003 Sum_probs=86.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHH----HHHhccCCCCCChhhHHHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADEL----MKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~----~~~m~~~~~~~~~~~~~~li 206 (475)
+|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++ ++-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44556666777777877777654321 122333443333222 23334445566666555555
Q ss_pred HHHHhcCCHH-HHHHHHHHH----HHCC--CCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Q 011905 207 KGFCNAGRLE-DACGLFKVM----KRHG--CAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQ 279 (475)
Q Consensus 207 ~~~~~~~~~~-~a~~~~~~m----~~~g--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 279 (475)
..+.....-+ .-..+.+++ .+.| ..-|+.....+...|.+.+++.+|..-|- .. ..++...|..++.
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg----~~~s~~~~a~mL~ 175 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LG----TKESPEVLARMEY 175 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TS----CTTHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hc----CCchHHHHHHHHH
Confidence 5555443211 112222222 2222 23467777888899999999999888772 21 1234456654444
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011905 280 IFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVA 334 (475)
Q Consensus 280 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 334 (475)
-+...+...+ ++...-..++ -|.-.+++..|..+++...+
T Consensus 176 ew~~~~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 176 EWYKQDESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTSCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 4433332211 1222222333 35556788888887766553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.37 E-value=9.7 Score=28.41 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
+.-+..+-++.+....+.|++......+++|.+.+|+..|.++++-++.+-- ....+|..++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~---~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG---PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC---CchhhHHHHHH
Confidence 3445566666666667778888888888888888888888888877776531 13345665543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.62 E-value=9.4 Score=35.47 Aligned_cols=16 Identities=0% Similarity=-0.161 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHHHHcC
Q 011905 428 HSVEAAKLARFMLKKR 443 (475)
Q Consensus 428 ~~~~A~~~~~~m~~~~ 443 (475)
..+++.+.+-+|+..|
T Consensus 360 s~~~~E~~L~~lI~~g 375 (429)
T 4b4t_R 360 SVAFLDNDLGKFIPNK 375 (429)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC
Confidence 4566777777777554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.56 E-value=9.2 Score=35.55 Aligned_cols=98 Identities=9% Similarity=-0.087 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHH--H
Q 011905 308 TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS--SGGCYSSLVVELVRTKRLKEAEKLFSKMLA---SGVKPDGLAC--S 380 (475)
Q Consensus 308 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~--~ 380 (475)
+...+...|.+.|+++.|.+.+.++...-..+ -...+-.+++.+...+++..+...+.+... .+-.|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56677778888888888888888877542222 245666777777788888888877777653 2222222111 0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 381 VMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
.-...+...+++..|...|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111234557777777777666554
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=82.55 E-value=11 Score=32.01 Aligned_cols=43 Identities=7% Similarity=-0.101 Sum_probs=19.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHH
Q 011905 353 RTKRLKEAEKLFSKMLASGVKPDGL---ACSVMIRELCLGGQVLEGF 396 (475)
Q Consensus 353 ~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~ 396 (475)
..++.....++.+.+.+.|..++.. -.+.| ...+..|+.+-+.
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~ 236 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPL-ILAVEKKHLGLVQ 236 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH-HHHHHTTCHHHHH
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHH-HHHHHcCCHHHHH
Confidence 4455444455555566666554432 12223 3334556655433
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=82.25 E-value=7.1 Score=33.36 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=56.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC-chhhHHHHHHHHH
Q 011905 349 VELVRTKRLKEAEKLFSKMLASGVKPD---GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV-DSDIHSVLLLGLC 424 (475)
Q Consensus 349 ~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 424 (475)
...+..|+.+-+..+++.. |..++ ....+.+..+ +..|......++.+.+.+.|..+.. +..-. ..+...+
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~-t~L~~A~ 227 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGK-TPLILAV 227 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC-CHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCC-cHHHHHH
Confidence 3344567765544444321 43332 2223344443 4456655556777778887764421 11222 2334445
Q ss_pred hcCCHHHHHHHHHHHHH-cCCCCChhh--HHHHHHHHHhcCCHhHHhhccccC
Q 011905 425 RKNHSVEAAKLARFMLK-KRIWLQGPY--VDKIVEHLKKSGDEELITNLPKIG 474 (475)
Q Consensus 425 ~~g~~~~A~~~~~~m~~-~~~~~~~~~--~~~l~~~~~~~g~~~~a~~l~~~~ 474 (475)
+.|+.+-+.. +++ .|..++... -...+....+.|+.+.++-+++.|
T Consensus 228 ~~~~~~~v~~----Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G 276 (285)
T 1wdy_A 228 EKKHLGLVQR----LLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276 (285)
T ss_dssp HTTCHHHHHH----HHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred HcCCHHHHHH----HHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence 6677654444 444 444333221 112334445667777776666543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=81.54 E-value=14 Score=27.49 Aligned_cols=73 Identities=5% Similarity=0.085 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011905 302 CAPNRVTISTLIKGFCVEGN---LDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDG 376 (475)
Q Consensus 302 ~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 376 (475)
-.|+..+--...-++.+..+ ..++..+++++.+.+..-....+-.|.-++.+.|++++|.+..+.+.+. .|+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 34555555555555665554 3467777777776553223455566677777888888888888887754 5653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.91 E-value=9.3 Score=29.79 Aligned_cols=28 Identities=7% Similarity=0.007 Sum_probs=21.5
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 412 DSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 412 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
+.+.--.+..+|.+.|++++|+.+++..
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 4455556888899999999999987654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.19 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.18 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.18 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.15 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.1 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.09 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.02 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.93 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.59 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.56 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.54 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.48 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.41 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.4 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.4 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.34 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.34 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.29 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.27 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.18 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.15 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.12 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.1 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.04 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.0 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.95 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.91 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.88 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.85 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.75 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.75 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.66 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.66 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.65 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.61 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.52 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.4 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.25 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.12 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.03 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.97 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.85 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.66 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.21 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.97 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.19 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.08 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 90.66 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.92 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.2 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 86.99 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=9.6e-20 Score=168.91 Aligned_cols=377 Identities=14% Similarity=0.032 Sum_probs=288.3
Q ss_pred CCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHH
Q 011905 71 PSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMW 150 (475)
Q Consensus 71 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 150 (475)
.++.+.|.+.+....... +.+...+..+...+...|+++.|...++...+.. +-+..++..+..++.+.|++++|+.
T Consensus 12 ~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccccccc
Confidence 456677777666654432 2345566666677777777777777777776654 4456677777777777777777777
Q ss_pred HHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011905 151 VLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGC 230 (475)
Q Consensus 151 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 230 (475)
.+....+.. +.+...+..........+....+........... .................+....+...+.......
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 165 (388)
T d1w3ba_ 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ- 165 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccC-
Confidence 777776543 2344444444444555555555555544443332 3344445555666667777888888887777654
Q ss_pred CcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 011905 231 AANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTIS 310 (475)
Q Consensus 231 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 310 (475)
+.+...+..+...+...|++++|...+++..+.. +.+...|..+...+...|++++|+..++.....+ +.+...+.
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 241 (388)
T d1w3ba_ 166 PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC---cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHH
Confidence 3367788888999999999999999999988753 3467788899999999999999999999988764 34667788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011905 311 TLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG 390 (475)
Q Consensus 311 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 390 (475)
.+...+.+.|++++|...|++..+.... +..++..+...+...|++++|.+.++...... +.+...+..+...+...|
T Consensus 242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 319 (388)
T d1w3ba_ 242 NLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCC
Confidence 8889999999999999999999887543 56788999999999999999999999988753 456788888889999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 011905 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGD 463 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~ 463 (475)
++++|...+++..+.. | .+..+|..+..+|.+.|++++|.+.|+++++.. |-++..+..+..+|.+.||
T Consensus 320 ~~~~A~~~~~~al~~~--p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 320 NIEEAVRLYRKALEVF--P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CHHHHHHHHHHHTTSC--T-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhC--C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 9999999999998754 3 467889999999999999999999999999876 6678889999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.8e-19 Score=166.96 Aligned_cols=358 Identities=13% Similarity=0.021 Sum_probs=293.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCCh
Q 011905 101 CEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDM 180 (475)
Q Consensus 101 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 180 (475)
....-+.|+++.|.+.++.+.+.. +-+...+..+..++.+.|++++|...|++..+.. +-+..+|..+..++.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 344566799999999999998764 4568888889999999999999999999988764 34678899999999999999
Q ss_pred hHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011905 181 IAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEM 260 (475)
Q Consensus 181 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 260 (475)
++|.+.+....... +.+...+..........+....+............ ................+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence 99999999988755 44555555555566666666666666665555433 34555566677778888899999988888
Q ss_pred HhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011905 261 EKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSS 340 (475)
Q Consensus 261 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 340 (475)
.... +.+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...++.....+.. +
T Consensus 162 ~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 236 (388)
T d1w3ba_ 162 IETQ---PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred hccC---cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-H
Confidence 7743 4567788888899999999999999999988763 335678888999999999999999999999886544 5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 341 GGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 341 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|.+.++...... +.+...+..+.
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~ 312 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLA 312 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC---CccchhhhHHH
Confidence 6678888999999999999999999998763 2356788889999999999999999999998865 34778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 421 LGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 421 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..+.+.|++++|++.+++.++.. |.++..+..+..++.+.|++++|.+.++
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999998876 6677889999999999999999987664
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=2.4e-13 Score=122.26 Aligned_cols=269 Identities=13% Similarity=-0.009 Sum_probs=172.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 011905 170 VIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS 249 (475)
Q Consensus 170 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~ 249 (475)
....+.+.|++++|...|+++.+.. +-+..+|..+..++...|++++|...|.+..+... -+...+..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 4455666777777777777766543 33456666666777777777777777776665432 245666666666777777
Q ss_pred hHHHHHHHHHHHhcCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011905 250 MERALELLGEMEKEGGDCSPNVVTY-TSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 250 ~~~a~~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 328 (475)
+++|.+.+++..... |+.... ........ ..+.......+..+...+.+.+|...
T Consensus 103 ~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 103 QRQACEILRDWLRYT----PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp HHHHHHHHHHHHHTS----TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc----cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHH
Confidence 777777776666531 221110 00000000 00000111122233445567778888
Q ss_pred HHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 329 IDKVVAGGS-VSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 329 ~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
+....+... ..+..++..+...+...|++++|+..+++..+.. +-+...+..+...+...|++++|.+.+++..+..
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 236 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ- 236 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-
Confidence 877765433 2345677788888889999999999999887653 2246778888888999999999999999988864
Q ss_pred CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------CCCChhhHHHHHHHHHhcCCHhHHh
Q 011905 408 LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR----------IWLQGPYVDKIVEHLKKSGDEELIT 468 (475)
Q Consensus 408 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (475)
+.+..+|..+..+|.+.|++++|++.|++.++.. .......+..+..++...|+.+.+.
T Consensus 237 --p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 237 --PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp --TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred --hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 2367788889999999999999999999888631 1223345666777777777776554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=8.3e-13 Score=118.63 Aligned_cols=227 Identities=12% Similarity=0.035 Sum_probs=121.0
Q ss_pred HHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHH
Q 011905 138 LCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLED 217 (475)
Q Consensus 138 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~ 217 (475)
.+.+.|++++|+..|+++.+.. +-+...|..+..++...|+++.|...|++..+.. +-+...|..+...+...|++++
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccc
Confidence 3445555555555555555433 2234455555555555555555555555554432 2234445555555555555555
Q ss_pred HHHHHHHHHHCCCC--------------cCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHh
Q 011905 218 ACGLFKVMKRHGCA--------------ANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCG 283 (475)
Q Consensus 218 a~~~~~~m~~~g~~--------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 283 (475)
|.+.++........ .+.......+..+...+.+.+|.+.+.+..+... -..+..++..+...+..
T Consensus 106 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p-~~~~~~~~~~l~~~~~~ 184 (323)
T d1fcha_ 106 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP-TSIDPDVQCGLGVLFNL 184 (323)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST-TSCCHHHHHHHHHHHHH
T ss_pred cccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh-cccccccchhhHHHHHH
Confidence 55555555443110 0000111112223334455666666666555321 12344556666666667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011905 284 KGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKL 363 (475)
Q Consensus 284 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 363 (475)
.|++++|+..+++..... +-+...|..+..++.+.|++++|.+.|+..++.... +..+|..+..+|.+.|++++|++.
T Consensus 185 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 262 (323)
T d1fcha_ 185 SGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEH 262 (323)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777776665542 224555666666666777777777777666654322 345566666667777777777777
Q ss_pred HHHHHH
Q 011905 364 FSKMLA 369 (475)
Q Consensus 364 ~~~m~~ 369 (475)
|++.++
T Consensus 263 ~~~al~ 268 (323)
T d1fcha_ 263 FLEALN 268 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=5.2e-09 Score=94.22 Aligned_cols=295 Identities=13% Similarity=0.027 Sum_probs=146.9
Q ss_pred HHHHhcCChhHHHHHHHHhccCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CcCHHHHHHHH
Q 011905 172 RLFCEKGDMIAADELMKGMGLIDLYPD-----IITYVSMIKGFCNAGRLEDACGLFKVMKRHG----C-AANLVAYSALL 241 (475)
Q Consensus 172 ~~~~~~g~~~~a~~~~~~m~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~-~~~~~~~~~ll 241 (475)
..+...|++++|++++++..... +.+ ...+..+...+...|++++|...+++..+.. . ......+..+.
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~-~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhC-cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 33445555555555555544321 111 1233444455555555555555555443311 0 00122334444
Q ss_pred HHHHhcCChHHHHHHHHHHHhc----CCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHH
Q 011905 242 DGICRLGSMERALELLGEMEKE----GGDCSP-NVVTYTSVIQIFCGKGMMKEALGILDRMEALG----CAPNRVTISTL 312 (475)
Q Consensus 242 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~l 312 (475)
..+...|++..+...+...... .....+ ....+..+...+...|+++.+...+....... .......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 5555666666666655554321 000011 12233444555666666666666665554321 11123334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHH
Q 011905 313 IKGFCVEGNLDEAYQLIDKVVAG----GSVS--SGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKP---DGLACSVMI 383 (475)
Q Consensus 313 i~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li 383 (475)
...+...++...+...+...... +..+ ....+..+...+...|++++|...+.+..+..... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 55555666666666666554331 1111 12234445556667777777777776655432211 123344456
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC----CChhhH
Q 011905 384 RELCLGGQVLEGFCLYEDIEKI----GFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK----RIW----LQGPYV 451 (475)
Q Consensus 384 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~----~~~~~~ 451 (475)
.++...|++++|...++++... +..| ....++..+...|.+.|++++|.+.+++.++. |.. .....+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMS-DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccCh-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 6677777777777777766532 2222 23455666777777777777777777776543 211 112234
Q ss_pred HHHHHHHHhcCCHhHHh
Q 011905 452 DKIVEHLKKSGDEELIT 468 (475)
Q Consensus 452 ~~l~~~~~~~g~~~~a~ 468 (475)
..++..+...++.++++
T Consensus 338 ~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhcCCChHHH
Confidence 44555566666555543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2e-09 Score=95.33 Aligned_cols=214 Identities=11% Similarity=-0.010 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Q 011905 202 YVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG-SMERALELLGEMEKEGGDCSPNVVTYTSVIQI 280 (475)
Q Consensus 202 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 280 (475)
|+.+...+.+.+..++|+++++.+++... -+...|+....++...| ++++|++.++...+.. +-+..+|..+...
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~---p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH---HhhhhHHHHHhHH
Confidence 33333444444555555555555554421 13444444444444443 2555555555554432 2344455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC----
Q 011905 281 FCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR---- 356 (475)
Q Consensus 281 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 356 (475)
+.+.|++++|++.++.+.+.. +-+...|..+...+.+.|++++|...++.+++.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 555555555555555555432 223445555555555555555555555555554332 33344444444433332
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 357 --LKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 357 --~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+++|++.+.+.++.. +-+...|..+...+. ....+++.+.++...+....+ .+...+..++..|.
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSH-SSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTC-CCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCc-CCHHHHHHHHHHHH
Confidence 456666666665442 123444444433332 333455666666665543222 13334444555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=8e-09 Score=91.27 Aligned_cols=190 Identities=12% Similarity=0.011 Sum_probs=135.0
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011905 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQL 328 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 328 (475)
..++|..+|++..+. ..+.+...|...+..+...|+.++|..+|+.+.+.........|...+..+.+.|+++.|.++
T Consensus 79 ~~~~a~~i~~ral~~--~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 79 FSDEAANIYERAIST--LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHTT--TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred chHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 457778888887762 234556677777778888888888888888887654333345677888888888888888888
Q ss_pred HHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 329 IDKVVAGGSVSSGGCYSSLVVE-LVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
|+.+++.+... ...|...... +...|+.+.|..+|+.+.+.. ..+...+...+..+...|+++.|+.+|++..+...
T Consensus 157 ~~~al~~~~~~-~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 157 FKKAREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHHhCCCc-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 88887765432 2333333322 334578888888888888752 33467788888888888899999999998877642
Q ss_pred -CCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 408 -LSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 408 -~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
.|......|...+..-...|+.+.+.++++++.+.
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22223457787777777889999988888887664
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=3.3e-08 Score=88.72 Aligned_cols=300 Identities=12% Similarity=0.055 Sum_probs=194.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHhccCCCC-C----ChhhHHHH
Q 011905 135 IFNLCEKARLANEAMWVLRKMPEFDLRPD----TIIYNNVIRLFCEKGDMIAADELMKGMGLIDLY-P----DIITYVSM 205 (475)
Q Consensus 135 li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~----~~~~~~~l 205 (475)
....+...|++++|++++++..+.....+ ...+..+..++...|++++|.+.+++....... + ....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34466778888888888888766431111 235667778888888988888888877542111 1 12345556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCCc---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC--CCCCcHHHHHH
Q 011905 206 IKGFCNAGRLEDACGLFKVMKRH----GCAA---NLVAYSALLDGICRLGSMERALELLGEMEKEGG--DCSPNVVTYTS 276 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~----g~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~~ 276 (475)
...+...|++..+...+...... +... ....+..+...+...|+++.+...+........ +.......+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 67778888988888888766531 1111 123455677788889999999999888776321 11223445556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHH
Q 011905 277 VIQIFCGKGMMKEALGILDRMEAL----GCAPN--RVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS---SGGCYSSL 347 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l 347 (475)
....+...++...+...+.+.... +..+. ...+..+...+...|+++.|...++......... ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 667778888888888888765432 11111 2334556667788899999999998876543322 23445667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--CchhhH
Q 011905 348 VVELVRTKRLKEAEKLFSKMLA----SGVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKI----GFLSS--VDSDIH 416 (475)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~ 416 (475)
...+...|++++|...+++... .+..|+ ...+..+...|...|++++|.+.+++..+. |.... ......
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~ 337 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAM 337 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHH
Confidence 8889999999999999988763 344443 345667778889999999999999987653 21100 011223
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 011905 417 SVLLLGLCRKNHSVEAAK 434 (475)
Q Consensus 417 ~~li~~~~~~g~~~~A~~ 434 (475)
..++..+...++.+++.+
T Consensus 338 ~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 338 AQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhcCCChHHHH
Confidence 444455555565555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=6.9e-09 Score=91.70 Aligned_cols=183 Identities=13% Similarity=0.039 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011905 286 MMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFS 365 (475)
Q Consensus 286 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 365 (475)
..++|..+|++..+...+.+...+...+....+.|+++.|..+|+.+++........+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45788899999887655556677888888899999999999999999986655445678999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 011905 366 KMLASGVKPDGLACSVMIR-ELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR- 443 (475)
Q Consensus 366 ~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 443 (475)
++.+.+.. +...|..... -+...|+.+.|..+|+.+.+.. +.+...|...+..+.+.|+.+.|..+|++.++..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~---p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~ 234 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence 99876432 3333333332 2345689999999999999874 2367899999999999999999999999999875
Q ss_pred CCCC--hhhHHHHHHHHHhcCCHhHHhhccc
Q 011905 444 IWLQ--GPYVDKIVEHLKKSGDEELITNLPK 472 (475)
Q Consensus 444 ~~~~--~~~~~~l~~~~~~~g~~~~a~~l~~ 472 (475)
..|. ...|...+..-...|+.+.+.++.+
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2332 3478888888889999999888765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.7e-08 Score=89.19 Aligned_cols=214 Identities=11% Similarity=0.021 Sum_probs=158.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcC-CHHHHHHHHHhcccCCCCCCHhhHHHHHHHH
Q 011905 96 MYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKAR-LANEAMWVLRKMPEFDLRPDTIIYNNVIRLF 174 (475)
Q Consensus 96 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~ 174 (475)
.|+.+..++...+..++|+++++.+.+.+ |-+...|+....++...| ++++|+..++...+.. +-+..+|+.+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 44455556777788899999999998876 667778888888877765 5899999999887754 34788899999999
Q ss_pred HhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC-----
Q 011905 175 CEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGS----- 249 (475)
Q Consensus 175 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~----- 249 (475)
.+.|++++|++.++++.+.. +.+...|..+...+.+.|++++|++.++.+.+.... +...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 99999999999999988755 556888888999999999999999999999887533 67778777766666554
Q ss_pred -hHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 011905 250 -MERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAP-NRVTISTLIKGFC 317 (475)
Q Consensus 250 -~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~ 317 (475)
+++|++.+.+..+.. +.+...|+.+...+.. ...+++.+.++...+....+ +...+..+...|.
T Consensus 201 ~~~~ai~~~~~al~~~---P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV---PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC---CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 578888888877753 4466777766555444 44577777777766543222 3445555555553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.10 E-value=5.9e-09 Score=89.55 Aligned_cols=198 Identities=9% Similarity=-0.116 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 011905 235 VAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIK 314 (475)
Q Consensus 235 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 314 (475)
.+|..+..+|.+.|++++|.+.|++..+.. |-+..+|+.+..+|.+.|++++|+..|++..+.. +-+..++..+..
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~ 113 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR---PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC---CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHH
Confidence 345556666777777777777777776642 3456667777777777777777777777766643 223455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----
Q 011905 315 GFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGG---- 390 (475)
Q Consensus 315 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---- 390 (475)
++...|++++|...|+..++.... +......+..++.+.+..+.+..+........ ++...+. ++..+....
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~ 189 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQT 189 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHH
Confidence 777777777777777777665432 23333333344445555444444444444332 1111121 112111111
Q ss_pred CHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 391 QVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
..+.+...+....... | ....+|..+...|...|++++|.+.|++.+...
T Consensus 190 ~~~~~~~~~~~~~~~~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 190 LMERLKADATDNTSLA--E-HLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHHHCCSHHHHH--H-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhcC--c-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 1222222211111110 1 133466777888888899999999998888765
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.09 E-value=6e-10 Score=100.06 Aligned_cols=232 Identities=11% Similarity=-0.006 Sum_probs=119.9
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhcCCCCCCcHHHHHH-HHHHHHhcCCHHH
Q 011905 213 GRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG--SMERALELLGEMEKEGGDCSPNVVTYTS-VIQIFCGKGMMKE 289 (475)
Q Consensus 213 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~ 289 (475)
|++++|+..++...+.. +-+...|..+..++...+ ++++|...+.++.+.. +++...+.. ....+...+.+++
T Consensus 87 ~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 87 ALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC---chhhhhhhhHHHHHHHhccccHH
Confidence 33555666666655543 224445555544444443 3566666666665532 233444332 2344455566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
|+..++.....+. -+...|..+..++.+.|++++|...+....+.. | . ...+...+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~--~-~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 163 ELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--L--K-ELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--H--H-HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--H--H-HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6666666555432 245555556666666666555443332222110 0 0 11122233444555556666665554
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 011905 370 SGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGP 449 (475)
Q Consensus 370 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 449 (475)
.. .++...+..+...+...|+.++|...+.+..+.. +.+..+|..+...+.+.|++++|++.++++++.. |.+..
T Consensus 237 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~ 311 (334)
T d1dcea1 237 GR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN---KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAA 311 (334)
T ss_dssp SC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHH
T ss_pred hC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC---chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHH
Confidence 42 2233344444555555666666666666665543 2245566666667777777777777777776665 33445
Q ss_pred hHHHHHHHHH
Q 011905 450 YVDKIVEHLK 459 (475)
Q Consensus 450 ~~~~l~~~~~ 459 (475)
.|..+...+.
T Consensus 312 y~~~L~~~~~ 321 (334)
T d1dcea1 312 YLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555544444
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=1.8e-09 Score=96.76 Aligned_cols=264 Identities=8% Similarity=-0.037 Sum_probs=177.3
Q ss_pred CCHHHHHHHHHhcccCCCCCC-HhhHHHHHHH----------HHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh
Q 011905 143 RLANEAMWVLRKMPEFDLRPD-TIIYNNVIRL----------FCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN 211 (475)
Q Consensus 143 ~~~~~A~~~~~~m~~~~~~~~-~~~~~~ll~~----------~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 211 (475)
+..++|++++++..+.. |+ ...|+..-.. +...|++++|+.+++...+.. +.+...|..+..++..
T Consensus 43 ~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 43 ELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR 119 (334)
T ss_dssp CCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence 33467777777776543 33 3344332222 223345778888888877654 4456667766666665
Q ss_pred cC--CHHHHHHHHHHHHHCCCCcCHHHHH-HHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHH
Q 011905 212 AG--RLEDACGLFKVMKRHGCAANLVAYS-ALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMK 288 (475)
Q Consensus 212 ~~--~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 288 (475)
.+ ++++|...+..+.+.. +++...+. .....+...+.+++|++.++.+.+.. +-+...|+.+..++.+.|+++
T Consensus 120 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCCC
T ss_pred hccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCHH
Confidence 54 4788888888887764 23455544 44467777889999999998888753 457788888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 289 EALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKML 368 (475)
Q Consensus 289 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 368 (475)
+|...+....+. .|+ .......+...+..+++...+......... +...+..+...+...|+.++|...+.+..
T Consensus 196 ~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 196 DSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 776655443332 111 122333455667777788888877766543 34456667777788899999999998887
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHH
Q 011905 369 ASGVKP-DGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLC 424 (475)
Q Consensus 369 ~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 424 (475)
+. .| +...+..+...+...|+.++|.+.++++.+.. | .+...|..+...+.
T Consensus 270 ~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P-~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 270 PE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--P-MRAAYLDDLRSKFL 321 (334)
T ss_dssp TT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--G-GGHHHHHHHHHHHH
T ss_pred hh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--c-ccHHHHHHHHHHHh
Confidence 55 33 34667778888899999999999999999874 2 35566776655554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.93 E-value=4.3e-08 Score=83.98 Aligned_cols=96 Identities=13% Similarity=-0.017 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHH
Q 011905 131 MMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFC 210 (475)
Q Consensus 131 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 210 (475)
+|..+...|.+.|++++|++.|++..+.. +-+..+|+.+..++.+.|++++|++.|+++.+.. +-+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 33334445555555555555555555432 2344555555555555555555555555555432 223444555555555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 011905 211 NAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~ 228 (475)
..|++++|...|+...+.
T Consensus 117 ~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh
Confidence 555555555555555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=2.1e-06 Score=74.54 Aligned_cols=129 Identities=12% Similarity=0.034 Sum_probs=59.9
Q ss_pred HHHHHhcCChhHHHHHHHHhccC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CcCHHHHHHH
Q 011905 171 IRLFCEKGDMIAADELMKGMGLI----DLYP-DIITYVSMIKGFCNAGRLEDACGLFKVMKRH----GC-AANLVAYSAL 240 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~l 240 (475)
...|...|++++|.+.|.+.... +-++ -..+|..+..+|.+.|++++|.+.++...+. |- .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566666777777666665431 1011 1234555566666666666666666544331 10 0112233344
Q ss_pred HHHHHh-cCChHHHHHHHHHHHhcC--CCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 241 LDGICR-LGSMERALELLGEMEKEG--GDCSP-NVVTYTSVIQIFCGKGMMKEALGILDRMEA 299 (475)
Q Consensus 241 l~~~~~-~g~~~~a~~~~~~~~~~~--~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 299 (475)
...|.. .|++++|.+.+.+..+.. .+.++ -..++..+...+...|++++|+..|++...
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 444432 355666665555543210 00000 122344445555555555555555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=4.8e-06 Score=67.12 Aligned_cols=123 Identities=14% Similarity=0.008 Sum_probs=64.1
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHH
Q 011905 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 252 (475)
.+...|+++.|++.|+++. +|+..+|..+..++...|++++|++.|++.++... -+...|..+..+|.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHHH
Confidence 3445555666655555432 34455555555555666666666666665555432 245555555566666666666
Q ss_pred HHHHHHHHHhcCCC------------CCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 253 ALELLGEMEKEGGD------------CSP-NVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 253 a~~~~~~~~~~~~~------------~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
|.+.|++......+ ... ...++..+..++.+.|++++|.+.++.....
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66665555431100 000 1223344455566666666666666655544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.56 E-value=8.9e-05 Score=64.49 Aligned_cols=266 Identities=9% Similarity=0.031 Sum_probs=141.0
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHH
Q 011905 127 VSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMI 206 (475)
Q Consensus 127 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li 206 (475)
|+..--..+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 3444444566777788888888888877654 667777778888888887777654 2456777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCC
Q 011905 207 KGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGM 286 (475)
Q Consensus 207 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 286 (475)
..+.+......+ .+...+...+......++..|-..|.+++...+++...... +.+...++-++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~---~~~~~~~~~L~~lyak~~- 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFK- 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTC-
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC---ccchHHHHHHHHHHHHhC-
Confidence 777776665443 22233334456666677888888888888888888765421 356667777777777754
Q ss_pred HHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011905 287 MKEALGILDRMEALGCAPNRV----------TISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKR 356 (475)
Q Consensus 287 ~~~a~~~~~~m~~~~~~p~~~----------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 356 (475)
.++..+.++... -..|.. .|..++-.|.+.|.++.|..+. .++ .++..-....+..+.+.++
T Consensus 148 ~~kl~e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N 219 (336)
T d1b89a_ 148 PQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVAN 219 (336)
T ss_dssp HHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSS
T ss_pred hHHHHHHHHhcc---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCC
Confidence 333333333221 111111 1233334444444444443332 121 1222224445566666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-------------HHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 357 LKEAEKLFSKMLASGVKPDGLACSVMIRE-------------LCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 357 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~-------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
++...++.....+. .| ...+.++.. +.+.+++.....+++...+.+ +..+.+++...|
T Consensus 220 ~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n-----~~~vn~al~~ly 290 (336)
T d1b89a_ 220 VELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN-----NKSVNESLNNLF 290 (336)
T ss_dssp THHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC-----hHHHHHHHHHHH
Confidence 66666655555542 23 223333333 344444444555555544433 345777777888
Q ss_pred HhcCCHHHHH
Q 011905 424 CRKNHSVEAA 433 (475)
Q Consensus 424 ~~~g~~~~A~ 433 (475)
...++++.-.
T Consensus 291 ie~~d~~~l~ 300 (336)
T d1b89a_ 291 ITEEDYQALR 300 (336)
T ss_dssp HHTTCHHHHH
T ss_pred hCcchhHHHH
Confidence 8877765433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=4.7e-06 Score=67.18 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=95.4
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHH
Q 011905 137 NLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLE 216 (475)
Q Consensus 137 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~ 216 (475)
..+...|++++|++.|+++. +|+..+|..+..++...|++++|++.|++..+.+ +.+...|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHH
Confidence 45567888999998888764 3677788888888889999999999998888765 556778888888888899999
Q ss_pred HHHHHHHHHHHCCC--------------Cc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 011905 217 DACGLFKVMKRHGC--------------AA-NLVAYSALLDGICRLGSMERALELLGEMEKE 263 (475)
Q Consensus 217 ~a~~~~~~m~~~g~--------------~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 263 (475)
+|+..|++...... .+ ...++..+..++.+.|++++|.+.+....+.
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99888888765310 11 1355667788899999999999999988873
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=2.5e-06 Score=62.55 Aligned_cols=105 Identities=10% Similarity=-0.074 Sum_probs=79.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhc
Q 011905 347 LVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRK 426 (475)
Q Consensus 347 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 426 (475)
-...+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|+..++...+.+ +.+...|..+..++...
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~g~~~~~~ 84 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK---PDWGKGYSRKAAALEFL 84 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc---cchhhHHHHHHHHHHHc
Confidence 3456778888888888888888653 3356678888888888888888888888888865 24777888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 427 NHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
|++++|+..+++.++.. |-++..+..+.+
T Consensus 85 ~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 113 (117)
T d1elwa_ 85 NRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 113 (117)
T ss_dssp TCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 88888888888888766 555555554443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.48 E-value=4.3e-06 Score=72.46 Aligned_cols=166 Identities=10% Similarity=-0.020 Sum_probs=102.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCCCCcHHHHHH
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRH----GCAA-NLVAYSALLDGICRLGSMERALELLGEMEKEG---GDCSPNVVTYTS 276 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~~ 276 (475)
....|...|++++|...|.+..+. +-.+ -..+|..+..+|.+.|++++|.+.+++..... ........++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 356777888889988888877652 1111 23577888888888999999888888765421 001112344555
Q ss_pred HHHHHH-hcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------hhH
Q 011905 277 VIQIFC-GKGMMKEALGILDRMEAL----GCAP-NRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSG------GCY 344 (475)
Q Consensus 277 li~~~~-~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~ 344 (475)
+...|. ..|++++|++.+++..+. +..+ -..++..+...+...|++++|...|+++......... ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 555553 358888888888765431 1111 1234566677777778888888877777664322211 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 345 SSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
...+..+...|+++.|...+++..+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444556677777777777777643
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.41 E-value=0.00037 Score=58.84 Aligned_cols=222 Identities=12% Similarity=-0.005 Sum_probs=114.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 011905 201 TYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEKEGGDCSPNVVTYTS 276 (475)
Q Consensus 201 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 276 (475)
.+..|...+...+|+++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-----~~~a~~~ 75 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-----ccchhhc
Confidence 33444444445555555555555555544 33344444444443 345555555555555432 2222333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011905 277 VIQIFCG----KGMMKEALGILDRMEALGCAPNRVTISTLIKGFC----VEGNLDEAYQLIDKVVAGGSVSSGGCYSSLV 348 (475)
Q Consensus 277 li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 348 (475)
+...+.. ..+.+.|...++.....|.. .....+...+. .......+...+......+ +...+..|.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence 3322222 34455566666555554421 11222222222 1234455555555554433 334455555
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHH
Q 011905 349 VELVR----TKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLL 420 (475)
Q Consensus 349 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li 420 (475)
..|.. ..+...+...++...+.| +......+-..+.. ..+.++|...|+...+.| +...+..|.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----~~~a~~~LG 221 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-----NGGGCFNLG 221 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc-----CHHHHHHHH
Confidence 55554 345566666666666544 33444444333433 457888888888888876 345566666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCC
Q 011905 421 LGLCR----KNHSVEAAKLARFMLKKRI 444 (475)
Q Consensus 421 ~~~~~----~g~~~~A~~~~~~m~~~~~ 444 (475)
..|.+ ..+.++|.++|++..+.|.
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 66654 3477888888888887773
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=7.9e-06 Score=59.76 Aligned_cols=90 Identities=14% Similarity=-0.018 Sum_probs=46.0
Q ss_pred HHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCh
Q 011905 171 IRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSM 250 (475)
Q Consensus 171 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~ 250 (475)
...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..+....+.. +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence 334445555555555555554433 3344445555555555555555555555555443 22445555555555555555
Q ss_pred HHHHHHHHHHHh
Q 011905 251 ERALELLGEMEK 262 (475)
Q Consensus 251 ~~a~~~~~~~~~ 262 (475)
++|+..|++..+
T Consensus 88 ~~A~~~~~~a~~ 99 (117)
T d1elwa_ 88 EEAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=5.8e-06 Score=64.34 Aligned_cols=90 Identities=11% Similarity=0.062 Sum_probs=43.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
..|.+.|++++|...|++.++.+.. +...|..+..+|...|++++|+..|++.++.. +-+...|..+..++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 3444555555555555555544322 34444555555555555555555555554432 122344444445555555555
Q ss_pred HHHHHHHHHHHc
Q 011905 394 EGFCLYEDIEKI 405 (475)
Q Consensus 394 ~a~~~~~~~~~~ 405 (475)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 555555555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.34 E-value=0.00056 Score=57.65 Aligned_cols=49 Identities=20% Similarity=0.141 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 011905 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 406 (475)
.++++|+..|.+..+.| +...+..|...|.. ..+.++|.+.|++..+.|
T Consensus 196 ~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 196 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 45666666666666554 23344444444433 225666666666666665
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=9.9e-06 Score=62.98 Aligned_cols=88 Identities=14% Similarity=0.030 Sum_probs=42.5
Q ss_pred HHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHH
Q 011905 173 LFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMER 252 (475)
Q Consensus 173 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~ 252 (475)
.|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|...|+..++.. +-+..+|..+..+|...|++++
T Consensus 19 ~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 19 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHH
Confidence 4445555555555555544433 2334444444455555555555555555544432 2234445555555555555555
Q ss_pred HHHHHHHHHh
Q 011905 253 ALELLGEMEK 262 (475)
Q Consensus 253 a~~~~~~~~~ 262 (475)
|.+.+++...
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=5.6e-06 Score=67.22 Aligned_cols=88 Identities=14% Similarity=0.001 Sum_probs=34.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhc
Q 011905 205 MIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGK 284 (475)
Q Consensus 205 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 284 (475)
....+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +-+..+|..+..+|...
T Consensus 10 ~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~---p~~~~a~~~lg~~~~~l 85 (201)
T d2c2la1 10 QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLGQCQLEM 85 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC---CCcHHHHHHHHHHHHHC
Confidence 3333444444444444444333332 1233334444444444444444444444443321 12233344444444444
Q ss_pred CCHHHHHHHHHH
Q 011905 285 GMMKEALGILDR 296 (475)
Q Consensus 285 g~~~~a~~~~~~ 296 (475)
|++++|+..|+.
T Consensus 86 ~~~~~A~~~~~~ 97 (201)
T d2c2la1 86 ESYDEAIANLQR 97 (201)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444444444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.27 E-value=5.7e-06 Score=67.20 Aligned_cols=97 Identities=9% Similarity=-0.094 Sum_probs=44.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 011905 163 DTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLD 242 (475)
Q Consensus 163 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 242 (475)
+...+......+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|+..|+...+.. +-+..+|..+..
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence 33444444444444455555555444444332 2334444444444555555555555555444432 113444444555
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 011905 243 GICRLGSMERALELLGEME 261 (475)
Q Consensus 243 ~~~~~g~~~~a~~~~~~~~ 261 (475)
+|.+.|++++|+..|+++.
T Consensus 81 ~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=2.6e-05 Score=61.27 Aligned_cols=76 Identities=7% Similarity=-0.263 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011905 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
|+.+..+|.+.|++++|+..++...+.. |.+..+|..+..+|...|++++|+..|+++++.. |-++.....+..+.
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~---p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELD---SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcc---ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4444555556666666666666666553 2255556666666666666666666666666554 33444444444443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.15 E-value=1.1e-05 Score=58.33 Aligned_cols=91 Identities=12% Similarity=0.054 Sum_probs=64.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh
Q 011905 346 SLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR 425 (475)
Q Consensus 346 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 425 (475)
.+...+.+.|++++|+..|++.++.. +-+...|..+..++.+.|++++|+..+++..+.. +.+..+|..+..+|..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc---cccccchHHHHHHHHH
Confidence 34556677778888888877777653 1246677777777777788888888777777764 2366777777777777
Q ss_pred cCCHHHHHHHHHHHH
Q 011905 426 KNHSVEAAKLARFML 440 (475)
Q Consensus 426 ~g~~~~A~~~~~~m~ 440 (475)
.|++++|++.+++.+
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 888888877777653
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=1.5e-05 Score=58.51 Aligned_cols=97 Identities=23% Similarity=0.182 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCCchhhHHHHHH
Q 011905 345 SSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQ---VLEGFCLYEDIEKIGFLSSVDSDIHSVLLL 421 (475)
Q Consensus 345 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~li~ 421 (475)
..+++.+...+++++|.+.|++..+.+ +.+..++..+..++.+.++ .++|+.+++++...+..| ....+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~-~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc-hHHHHHHHHHH
Confidence 346666777777777777777777653 3355666666666665443 445777777776654221 11346667777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 011905 422 GLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 422 ~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
+|.+.|++++|++.|+++++..
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhhHHHHHHHHHHHHhC
Confidence 7777788888888888777765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.10 E-value=1.8e-05 Score=57.20 Aligned_cols=87 Identities=11% Similarity=0.003 Sum_probs=42.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcC
Q 011905 206 IKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKG 285 (475)
Q Consensus 206 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 285 (475)
...+.+.|++++|...|++..+... -+..+|..+..++.+.|++++|+..|++..+.. |.+..+|..+...|...|
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccc---cccccchHHHHHHHHHCC
Confidence 3344445555555555555544421 134455555555555555555555555554432 233444455555555555
Q ss_pred CHHHHHHHHHH
Q 011905 286 MMKEALGILDR 296 (475)
Q Consensus 286 ~~~~a~~~~~~ 296 (475)
++++|++.+++
T Consensus 99 ~~~~A~~~l~~ 109 (112)
T d1hxia_ 99 NANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 55555555544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=1.7e-05 Score=58.21 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=10.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 238 SALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 238 ~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
..+..+|.+.|++++|.+.|+++.+
T Consensus 76 ~~Lg~~y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 76 FYLAVGNYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.00 E-value=0.00014 Score=55.79 Aligned_cols=79 Identities=6% Similarity=-0.220 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 011905 377 LACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVE 456 (475)
Q Consensus 377 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~ 456 (475)
.+|..+..+|.+.|++++|+..++.+.+.+ +.+..+|..+..++...|++++|+..|++.++.. |-+..+...+..
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~---p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~ 143 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID---KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc---chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 356667778889999999999999998875 3478899999999999999999999999999887 556666655544
Q ss_pred HHH
Q 011905 457 HLK 459 (475)
Q Consensus 457 ~~~ 459 (475)
+..
T Consensus 144 ~~~ 146 (153)
T d2fbna1 144 CVN 146 (153)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=0.0045 Score=53.43 Aligned_cols=146 Identities=8% Similarity=0.040 Sum_probs=92.9
Q ss_pred CCCCHHHHHHHHhhh-CCCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHH
Q 011905 55 AKLDSTCVIEVLHRC-FPSQSQMGIRFFIWAALQSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMK 133 (475)
Q Consensus 55 ~~~~~~~~~~~l~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 133 (475)
..++......+.+.| ..+..+.|..++.... .|..++..+...++++.|.+++... -+..+|.
T Consensus 10 ~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k 73 (336)
T d1b89a_ 10 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 73 (336)
T ss_dssp TCC----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHH
T ss_pred cCCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHH
Confidence 345666777788888 5677788888876542 2678888888889999988877642 3677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcC
Q 011905 134 VIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAG 213 (475)
Q Consensus 134 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~ 213 (475)
.+...|.+.....-|.- .......+......++..|-..|.++....+++...... ..+...++.++..|++.+
T Consensus 74 ~~~~~l~~~~e~~la~i-----~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 74 EVCFACVDGKEFRLAQM-----CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHHTTCHHHHHH-----TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcHHHHHHH-----HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 88999998877655422 122223466666788999999999999999999876432 567778888999888865
Q ss_pred CHHHHHHHHH
Q 011905 214 RLEDACGLFK 223 (475)
Q Consensus 214 ~~~~a~~~~~ 223 (475)
.++..+.++
T Consensus 148 -~~kl~e~l~ 156 (336)
T d1b89a_ 148 -PQKMREHLE 156 (336)
T ss_dssp -HHHHHHHHH
T ss_pred -hHHHHHHHH
Confidence 344444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.91 E-value=9.1e-05 Score=57.94 Aligned_cols=88 Identities=5% Similarity=-0.223 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 011905 376 GLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIV 455 (475)
Q Consensus 376 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~ 455 (475)
...+..+..++.+.|++++|+..++.+.+.. +.+...|..+..++...|++++|++.|+++++.. |.+......+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~---p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~ 152 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 152 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh---hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 3456667778888999999999999998865 3478889999999999999999999999999887 66777777766
Q ss_pred HHHHhcCCHhHH
Q 011905 456 EHLKKSGDEELI 467 (475)
Q Consensus 456 ~~~~~~g~~~~a 467 (475)
.+..+.......
T Consensus 153 ~~~~~l~~~~~~ 164 (169)
T d1ihga1 153 KVKQKIKAQKDK 164 (169)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666555444443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=0.00034 Score=54.53 Aligned_cols=79 Identities=9% Similarity=-0.032 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHH
Q 011905 343 CYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLG 422 (475)
Q Consensus 343 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~ 422 (475)
+|+.+..+|.+.|++++|+..+++.++.. +-+...+..+..+|...|++++|...|++..+.. | .+..+...+..+
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P-~n~~~~~~l~~~ 139 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--P-NNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--C-CCHHHHHHHHHH
Confidence 46677788888889999998888888753 2367778888888888899999999998888864 2 355555555444
Q ss_pred HHh
Q 011905 423 LCR 425 (475)
Q Consensus 423 ~~~ 425 (475)
.-+
T Consensus 140 ~~~ 142 (170)
T d1p5qa1 140 QQR 142 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=7.2e-06 Score=76.89 Aligned_cols=111 Identities=9% Similarity=-0.066 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGL 423 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~ 423 (475)
+..+...+.+.|+.++|...+....... | ..++..+...+...|++++|...|++..+.. +.+...|+.+...+
T Consensus 123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~---P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 123 SSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV---PSNGQPYNQLAILA 196 (497)
T ss_dssp --------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTBSHHHHHHHHHH
T ss_pred HHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCchHHHHHHHHHH
Confidence 4444444445555555554444433210 1 1334444445555555555555555555543 22445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 011905 424 CRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHLKKS 461 (475)
Q Consensus 424 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 461 (475)
...|+..+|...|.+.+... +|-+..+..+...+.+.
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 55555555555555555544 44445555555554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=0.0002 Score=52.91 Aligned_cols=107 Identities=11% Similarity=-0.016 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCC----chhhHHHH
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSV----DSDIHSVL 419 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~~l 419 (475)
+..+...+...|++++|+..|.+.++.+ +.+...+..+..+|.+.|++++|...++++.+....... -..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456667778888888888888887653 235677777778888888888888888887764211000 02356667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 011905 420 LLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDK 453 (475)
Q Consensus 420 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 453 (475)
...+...+++++|++.|++.+... +++.....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~ 117 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKK 117 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC--CCHHHHHH
Confidence 777778888888888888887653 45544443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.85 E-value=0.00036 Score=54.79 Aligned_cols=126 Identities=9% Similarity=-0.016 Sum_probs=83.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011905 314 KGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVL 393 (475)
Q Consensus 314 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 393 (475)
......|++++|.+.|...+.....+- + ......+-+...-..+.. -....+..+..++...|+++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~---l-------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPV---L-------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSST---T-------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccc---c-------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 456677888888888888776422110 0 000000001111111110 01245667888889999999
Q ss_pred HHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHHHHH
Q 011905 394 EGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLK-----KRIWLQGPYVDKIVE 456 (475)
Q Consensus 394 ~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~~~~l~~ 456 (475)
+|...++.+.+.. +.+...|..++.+|.+.|+..+|++.|+++.+ .|+.|++.+-...-.
T Consensus 85 ~Al~~~~~al~~~---P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~ 149 (179)
T d2ff4a2 85 AVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER 149 (179)
T ss_dssp HHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 9999999999875 35888999999999999999999999998754 588998876554433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.75 E-value=0.001 Score=51.51 Aligned_cols=78 Identities=9% Similarity=-0.215 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011905 379 CSVMIRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEHL 458 (475)
Q Consensus 379 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~~ 458 (475)
|..+..+|.+.|++++|+..++...+.. +.+...|..+..++...|++++|.+.|++++... |.+......+....
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~---p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLD---SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcc---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3344455566666666666666666653 2355666666666666666666666666666654 44444444444443
Q ss_pred Hh
Q 011905 459 KK 460 (475)
Q Consensus 459 ~~ 460 (475)
..
T Consensus 143 ~~ 144 (168)
T d1kt1a1 143 KK 144 (168)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.00036 Score=51.43 Aligned_cols=92 Identities=18% Similarity=0.265 Sum_probs=42.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-----hhhHHHHHHH
Q 011905 277 VIQIFCGKGMMKEALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVS-S-----GGCYSSLVVE 350 (475)
Q Consensus 277 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~-----~~~~~~li~~ 350 (475)
+...+.+.|++++|+..|.+..+.+ +.+...+..+..+|.+.|++++|...++.+++.+... . ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444432 1234444444444555555555555554444321100 0 1234445555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 011905 351 LVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 351 ~~~~g~~~~A~~~~~~m~~ 369 (475)
+...+++++|++.|++...
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 5555666666666655543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=1.2e-05 Score=75.35 Aligned_cols=76 Identities=12% Similarity=0.022 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIREL 386 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 386 (475)
+..+...+...|++++|...|++..+..+. +...|+.|...+...|+..+|...|.+.+... .|-..++..|...+
T Consensus 155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 333444444445555555555544443321 23344445555555555555555554444332 23334444444333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.66 E-value=0.0011 Score=50.51 Aligned_cols=61 Identities=16% Similarity=-0.056 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
|..+..+|.+.|++++|++.+.+.++.+ +.+..+|..+..++...|++++|...|+...+.
T Consensus 70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 70 NLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344444444444444444444444332 123344444444444444444444444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.65 E-value=0.00076 Score=52.86 Aligned_cols=123 Identities=13% Similarity=0.091 Sum_probs=77.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 011905 169 NVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLG 248 (475)
Q Consensus 169 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g 248 (475)
.........|++++|.+.|.+..... +.... ..+ ..+.+ +...-..+... ....+..+...+.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l-----~~~-~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW--RGPVL-----DDL-RDFQF--VEPFATALVED----KVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT-----GGG-TTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccccc-----ccC-cchHH--HHHHHHHHHHH----HHHHHHHHHHHHHHCC
Confidence 33456677888888888888776531 11100 000 00111 11111111111 2456677888888888
Q ss_pred ChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 011905 249 SMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRME-----ALGCAPNRVT 308 (475)
Q Consensus 249 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 308 (475)
++++|+..++.+.+.. +-+...|..++.+|.+.|+..+|++.|+++. +.|+.|...+
T Consensus 82 ~~~~Al~~~~~al~~~---P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 82 RASAVIAELEALTFEH---PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp CHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CchHHHHHHHHHHHhC---CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 8888888888888753 5677888888888888888888888888764 3578887654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.61 E-value=0.00082 Score=52.19 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 234 LVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEAL 300 (475)
Q Consensus 234 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 300 (475)
...|..+..+|.+.|++++|+..++++.+.. +.+..+|..+..++...|++++|+..|+...+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~---p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh---hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445556666667777777777777766642 345566666666777777777777777666664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.52 E-value=0.0041 Score=47.98 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
|..+..+|.+.|++++|+..++..++.+.. +..+|..+..+|...|++++|...|.++.+.
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444455555556666666655555554322 4455555555566666666666666665543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.40 E-value=0.00022 Score=59.91 Aligned_cols=51 Identities=25% Similarity=0.309 Sum_probs=28.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 011905 211 NAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEK 262 (475)
Q Consensus 211 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 262 (475)
+.|++++|+..+++.++.. +-|...+..+...|+..|++++|.+.++...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455555555555555543 22455555555555555555555555555555
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.36 E-value=9.8e-05 Score=62.18 Aligned_cols=51 Identities=22% Similarity=0.237 Sum_probs=28.7
Q ss_pred hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhcc
Q 011905 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGL 192 (475)
Q Consensus 141 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~ 192 (475)
+.|++++|+..+++.++.. +.|...+..+...++..|++++|.+.++...+
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455566666666555543 23555555566666666666666666655554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.25 E-value=0.0005 Score=51.86 Aligned_cols=36 Identities=8% Similarity=-0.138 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHhcccCCCCCCHhhHHHHHHHHHhc
Q 011905 141 KARLANEAMWVLRKMPEFDLRPDTIIYNNVIRLFCEK 177 (475)
Q Consensus 141 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 177 (475)
+.+.+++|...|+...+.. |.+...+..+..++...
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~ 44 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLEL 44 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHh
Confidence 3445666666666665543 34555555555555543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.12 E-value=0.0008 Score=50.69 Aligned_cols=49 Identities=8% Similarity=0.015 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcC
Q 011905 392 VLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKN-----------HSVEAAKLARFMLKKR 443 (475)
Q Consensus 392 ~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~ 443 (475)
+++|...+++..+.+ |.+..+|..+..+|...| .+++|.+.|++.++..
T Consensus 57 ~~~Ai~~~~kAl~l~---P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~ 116 (145)
T d1zu2a1 57 IQEAITKFEEALLID---PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 116 (145)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhc---chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence 344555555555543 124455555555554432 2455666666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.03 E-value=0.0038 Score=47.44 Aligned_cols=95 Identities=9% Similarity=-0.041 Sum_probs=60.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-
Q 011905 348 VVELVRTKRLKEAEKLFSKMLASG-VKPD----------GLACSVMIRELCLGGQVLEGFCLYEDIEKIG-----FLSS- 410 (475)
Q Consensus 348 i~~~~~~g~~~~A~~~~~~m~~~~-~~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~- 410 (475)
...+...|++++|+..|++.++.. -.|+ ...|+.+..+|...|++++|...+++..+.. ..+.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 334455677777777777666421 0111 2456667777778888888887777766421 1110
Q ss_pred --CchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 411 --VDSDIHSVLLLGLCRKNHSVEAAKLARFMLKK 442 (475)
Q Consensus 411 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 442 (475)
....+|+.+..+|...|++++|++.|++.++.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01235677788888999999999998887753
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.97 E-value=0.01 Score=44.98 Aligned_cols=58 Identities=14% Similarity=0.109 Sum_probs=30.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCCCCC---------cHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011905 241 LDGICRLGSMERALELLGEMEKEGGDCSP---------NVVTYTSVIQIFCGKGMMKEALGILDRME 298 (475)
Q Consensus 241 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 298 (475)
...+.+.|++++|++.|++..+.....+. ....|+.+..+|.+.|++++|...+++..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 33445566777777777666552111110 12345555555566666666555555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.85 E-value=0.0091 Score=40.74 Aligned_cols=71 Identities=8% Similarity=-0.088 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC---CCC-CCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHH
Q 011905 381 VMIRELCLGGQVLEGFCLYEDIEKIG---FLS-SVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVD 452 (475)
Q Consensus 381 ~li~~~~~~g~~~~a~~~~~~~~~~~---~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 452 (475)
.+-..+.+.|++++|...|++..+.. ..+ .....+++.+..++.+.|++++|++.++++++.. |-++.+++
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~ 84 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANG 84 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHH
Confidence 34444455555555555555544321 000 0123455556666666666666666666666554 33444433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.66 E-value=0.054 Score=38.00 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKIGF 407 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 407 (475)
.+..++.+.+.|+-+.-.++++.+.+.+ +|++...-.+..+|.+.|...++-+++.+.-+.|.
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 4444555555666666666665555433 45555555555666666666666666666655554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.21 E-value=0.11 Score=37.67 Aligned_cols=81 Identities=12% Similarity=0.013 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHh----c
Q 011905 355 KRLKEAEKLFSKMLASGVKPDGLACSVMIRELCL----GGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCR----K 426 (475)
Q Consensus 355 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 426 (475)
.+.++|++.+++..+.| +......|-..|.. ..+.++|.++|++..+.| +......|...|.. .
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----~~~a~~~Lg~~y~~G~gv~ 108 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----DQDGCLILGYKQYAGKGVV 108 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSC
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-----cchHHHHHHHHHHcCCccC
Confidence 45666666666666554 22333333333332 345677777777777765 33444455555543 3
Q ss_pred CCHHHHHHHHHHHHHcC
Q 011905 427 NHSVEAAKLARFMLKKR 443 (475)
Q Consensus 427 g~~~~A~~~~~~m~~~~ 443 (475)
.+.++|.++|++..+.|
T Consensus 109 ~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 109 KNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCC
Confidence 56777777777777766
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.028 Score=38.16 Aligned_cols=63 Identities=10% Similarity=-0.009 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 344 YSSLVVELVRTKRLKEAEKLFSKMLAS-----GVKPD-GLACSVMIRELCLGGQVLEGFCLYEDIEKIG 406 (475)
Q Consensus 344 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 406 (475)
+-.+...+.+.|++++|+..|++..+. ...++ ..++..|..++.+.|++++|...++++.+..
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 344556666667777776666665532 11122 3456666666777777777777777776654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.97 E-value=0.15 Score=36.80 Aligned_cols=46 Identities=7% Similarity=-0.116 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCChHHHHHHHHHHHh
Q 011905 214 RLEDACGLFKVMKRHGCAANLVAYSALLDGICR----LGSMERALELLGEMEK 262 (475)
Q Consensus 214 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 262 (475)
+.++|.+.+++..+.| +...+..|...|.. ..+.++|.++|++..+
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~ 87 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG 87 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhc
Confidence 4444555554444443 23333333333332 2344455555555444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.19 E-value=0.3 Score=34.18 Aligned_cols=140 Identities=11% Similarity=0.129 Sum_probs=78.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHH
Q 011905 210 CNAGRLEDACGLFKVMKRHGCAANLVAYSALLDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKE 289 (475)
Q Consensus 210 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 289 (475)
.-.|..++..+++.+..+. .+..-||.++.-....-+-+...++++.+-+- .++.|-. -...++..+...+.
T Consensus 13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-FDls~C~-Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-FDLDKCQ-NLKSVVECGVINNT--- 84 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-SCGGGCS-CTHHHHHHHHHTTC---
T ss_pred HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-cCchhhh-cHHHHHHHHHHhcc---
Confidence 3456677777777776664 25566666666666666666666666666542 1111100 01112222222221
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011905 290 ALGILDRMEALGCAPNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLA 369 (475)
Q Consensus 290 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 369 (475)
+...+...++.....|+-+.-.++++++.+.+ .+++...-.+..+|.+.|...++-+++.+.-+
T Consensus 85 ---------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 85 ---------------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp ---------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33344555566666777777777777665533 34556666666777777777777777777766
Q ss_pred CCCC
Q 011905 370 SGVK 373 (475)
Q Consensus 370 ~~~~ 373 (475)
.|++
T Consensus 149 ~G~K 152 (161)
T d1wy6a1 149 KGEK 152 (161)
T ss_dssp TTCH
T ss_pred HhHH
Confidence 6654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.08 E-value=0.56 Score=30.96 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=52.5
Q ss_pred HHHhcC-ChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhhHHHHHH
Q 011905 103 MSRIKQ-NPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTIIYNNVIR 172 (475)
Q Consensus 103 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~ll~ 172 (475)
.+.+.. +.-++.+-++.+......|++....+.+++|.+.+++..|+.+|+..+... .++...|..+++
T Consensus 14 ~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 14 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HhcCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 344443 556677778888888889999999999999999999999999999887532 234567776664
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=90.66 E-value=5.1 Score=35.25 Aligned_cols=345 Identities=8% Similarity=-0.046 Sum_probs=179.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCccCHHhHHHHHHHHHhcCCHHHHHHHHHhcccCCCCCCHhh
Q 011905 87 QSSYRHSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGCVVSVKMMKVIFNLCEKARLANEAMWVLRKMPEFDLRPDTII 166 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~ 166 (475)
.++.+.....-......+.+.++++.....+. ..+.+...-.....+....|+.++|...+..+-..|. .....
T Consensus 65 ~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~ 138 (450)
T d1qsaa1 65 NPTLPPARTLQSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNA 138 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTH
T ss_pred CCCChhHHHHHHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchH
Confidence 34443344444455666777777665443321 2244555545566677777777777766665443331 22223
Q ss_pred HHHHHHHHHh------------------cCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 167 YNNVIRLFCE------------------KGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCNAGRLEDACGLFKVMKRH 228 (475)
Q Consensus 167 ~~~ll~~~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 228 (475)
+..+...+.+ .|+...|..+...+.. .........+..... ...+.... ...
T Consensus 139 c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~----~~~~~~~a~~~l~~~---p~~~~~~~---~~~ 208 (450)
T d1qsaa1 139 CDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA----DYQTIASAIISLANN---PNTVLTFA---RTT 208 (450)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG----GGHHHHHHHHHHHHC---GGGHHHHH---HHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCCh----hHHHHHHHHHHHHhC---hHhHHHHH---hcC
Confidence 3333333333 3444444443332211 111122222222221 11111111 111
Q ss_pred CCCcCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhcCCCCCCcHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHcCC
Q 011905 229 GCAANLVAYSALLDGICR--LGSMERALELLGEMEKEGGDCSPNVVTYTSVI----QIFCGKGMMKEALGILDRMEALGC 302 (475)
Q Consensus 229 g~~~~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~~ 302 (475)
..+......+..++.+ ..+.+.|...+....... ..+...+..+- ......+..+.+..++......+
T Consensus 209 --~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~- 282 (450)
T d1qsaa1 209 --GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ---QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS- 282 (450)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT---TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-
T ss_pred --CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc---cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc-
Confidence 2233333333444433 257788888888776642 12222222222 22234566777877777766654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011905 303 APNRVTISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGVKPDGLACSVM 382 (475)
Q Consensus 303 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 382 (475)
.+.......+......+++..+...++.|.... ........-+..++...|+.+.|...|..... .++ -|..|
T Consensus 283 -~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~L 355 (450)
T d1qsaa1 283 -QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMV 355 (450)
T ss_dssp -CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHH
T ss_pred -cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHH
Confidence 344445556666677788888888888774322 12234445567888888999999988888763 233 23333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhh-----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011905 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDI-----HSVLLLGLCRKNHSVEAAKLARFMLKKRIWLQGPYVDKIVEH 457 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l~~~ 457 (475)
. + .+.|..-. +..... +...... --.-+..+...|+...|...+..+... .++.....+...
T Consensus 356 A-a-~~Lg~~~~-------~~~~~~-~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~l 422 (450)
T d1qsaa1 356 A-A-QRIGEEYE-------LKIDKA-PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARY 422 (450)
T ss_dssp H-H-HHTTCCCC-------CCCCCC-CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHH
T ss_pred H-H-HHcCCCCC-------CCcCCC-CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 2 2 22222100 000000 0000011 112356677889999999999888753 356677788899
Q ss_pred HHhcCCHhHHhhcccc
Q 011905 458 LKKSGDEELITNLPKI 473 (475)
Q Consensus 458 ~~~~g~~~~a~~l~~~ 473 (475)
..+.|.++.+......
T Consensus 423 A~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 423 AFNNQWWDLSVQATIA 438 (450)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 9999999988766543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.92 E-value=2.2 Score=29.77 Aligned_cols=69 Identities=13% Similarity=0.034 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011905 373 KPDGLACSVMIRELCLG---GQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFMLKKR 443 (475)
Q Consensus 373 ~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 443 (475)
.|...|--....++.+. .+.++++.+++++.+.+ |......+..+..+|.+.|++++|.+.++.+++..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 45555544455555544 45668888888888754 22224567778888889999999999999988876
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.20 E-value=2.5 Score=29.45 Aligned_cols=50 Identities=6% Similarity=0.158 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011905 321 NLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLAS 370 (475)
Q Consensus 321 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 370 (475)
+++++..+++++.+.+..-....+..|..+|.+.|++++|.+.++.+++.
T Consensus 53 d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 53 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34566666666665432111234455566666777777777777776654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.96 E-value=2.4 Score=27.85 Aligned_cols=50 Identities=10% Similarity=0.065 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011905 356 RLKEAEKLFSKMLASGVKPDGLACSVMIRELCLGGQVLEGFCLYEDIEKI 405 (475)
Q Consensus 356 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 405 (475)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++.++.+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555666665666677777777777777777777777777766654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=86.99 E-value=9.2 Score=33.47 Aligned_cols=311 Identities=10% Similarity=-0.034 Sum_probs=172.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----------------ccCHHhHHHHHHHHHhcCCHHHHHHHHHh
Q 011905 92 HSSFMYNRACEMSRIKQNPSIIIDVVEAYKEEGC-----------------VVSVKMMKVIFNLCEKARLANEAMWVLRK 154 (475)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------------~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 154 (475)
.+...-......+...|+...+...+..+-..|. .++...+-.-+......|++..|..+...
T Consensus 100 ~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~ 179 (450)
T d1qsaa1 100 GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ 179 (450)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhh
Confidence 3444333444555556666666555554433331 23333333344444455566666666554
Q ss_pred cccCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHhccCCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCc
Q 011905 155 MPEFDLRPDTIIYNNVIRLFCEKGDMIAADELMKGMGLIDLYPDIITYVSMIKGFCN--AGRLEDACGLFKVMKRHGCAA 232 (475)
Q Consensus 155 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~g~~~ 232 (475)
+.. .........+.... +...+....... .++......+..++.+ ..+.+.+..++.........
T Consensus 180 l~~----~~~~~~~a~~~l~~---~p~~~~~~~~~~-----~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~- 246 (450)
T d1qsaa1 180 MPA----DYQTIASAIISLAN---NPNTVLTFARTT-----GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL- 246 (450)
T ss_dssp CCG----GGHHHHHHHHHHHH---CGGGHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-
T ss_pred CCh----hHHHHHHHHHHHHh---ChHhHHHHHhcC-----CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-
Confidence 432 12223333443332 233333333222 2233333333333333 35788899888887764322
Q ss_pred CHHHHHHH----HHHHHhcCChHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 011905 233 NLVAYSAL----LDGICRLGSMERALELLGEMEKEGGDCSPNVVTYTSVIQIFCGKGMMKEALGILDRMEALGCAPNRVT 308 (475)
Q Consensus 233 ~~~~~~~l----l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 308 (475)
+..-...+ ...+...+..+.+...+......+ .+.....-.+......+++..+...+..|... ......-
T Consensus 247 ~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~ 321 (450)
T d1qsaa1 247 NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS----QSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEW 321 (450)
T ss_dssp CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc----cchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHH
Confidence 22223222 233344577888888888877643 34444444566667789999999999887543 2223455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC-HH---HHHHH
Q 011905 309 ISTLIKGFCVEGNLDEAYQLIDKVVAGGSVSSGGCYSSLVVELVRTKRLKEAEKLFSKMLASGV--KPD-GL---ACSVM 382 (475)
Q Consensus 309 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~-~~---~~~~l 382 (475)
.-.+.+++...|+.+.|...|...... ++ |..++.+- +.|..-. +....+ .+. .. .-..-
T Consensus 322 ~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa~-~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~r 387 (450)
T d1qsaa1 322 RYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAAQ-RIGEEYE-------LKIDKAPQNVDSALTQGPEMAR 387 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHHH-HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHH
T ss_pred HHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHHH-HcCCCCC-------CCcCCCCccHHHhhhcChHHHH
Confidence 567788999999999999999998753 22 44443322 2232100 000000 000 00 01123
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCCchhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011905 383 IRELCLGGQVLEGFCLYEDIEKIGFLSSVDSDIHSVLLLGLCRKNHSVEAAKLARFM 439 (475)
Q Consensus 383 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 439 (475)
+..+...|+...|...|..+.+.. +......+.....+.|.++.|+......
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~~-----~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKSK-----SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHHHhCC-----CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 455778899999999999887642 3445667777788999999998776554
|