Citrus Sinensis ID: 011909

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
Protein Sequence
MEDEKKKKRNKKKKNNKQTKTTTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHcccHHHHHcccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccEEHHccccccccccccccccEcccccccccccEEEcccccHHHHHHHHcccccccccHccccccccccccccHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
MEDEKKKKRnkkkknnkqtktttddvavgadpnhlingqkddvrsqasepadiqnvqvdadrhqsngaesaNLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSaigsdavtaltsdtepmsessdnMSSLNNRLETQGVvavkedrngingvhadppplvlssseaeysgeivqiplddkevqDLELQVVESYTDKvaavpltdapligapfRLVSFVAKYVSGadlvnknasn
Flexible Loop (DISEMBL)
medekkkkrnkkkknnkqtktttddvavgadpnHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEadkdswtqmesvsketiaglsvdiTQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAglssaigsdavTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSgadlvnknasn
Low Complexity Region (SEG)
MEDEkkkkrnkkkknnkqtktttDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVsslrsqlssdesKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN
Disordered region (IsUnstruct)
*********************************************************************************************************************LQNECDLYKEKVATL*********************************************IA******EFWL**************************************************TIAGLSVDITQLRMQVV************************************************IEAAGALIDKLITENIELVEKVNDLSVKLDR***************************************************************************GEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADL*******
Disordered Region (DISOPRED)
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LTDAPLIGAPFRLVSFVAKYVSGAD*VN*****
Disordered Region (DISEMBL)
*********************TTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK****************************STQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTAL***************SLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN
Disordered Region (DISPRO)
MED*KKKKRNKKKKNNKQTKTTTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVK**************************GEIVQIPLDDKEVQDLELQV******K*AAVPLTDAPLIGAPFRLVSFVAKYVSG**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxTTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDADRHQSNGAESANxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEGGLEMNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxESVSKETIAGLSVDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
224087896	477	predicted protein [Populus trichocarpa]	0.903	0.899	0.497	1e-108
255575616	492	conserved hypothetical protein [Ricinus	0.903	0.871	0.490	1e-102
224139390	456	predicted protein [Populus trichocarpa]	0.797	0.831	0.493	1e-94
297741755	466	unnamed protein product [Vitis vinifera]	0.92	0.937	0.454	8e-85
356566804	651	PREDICTED: uncharacterized protein LOC10	0.844	0.615	0.437	2e-75
359481328	511	PREDICTED: uncharacterized protein LOC10	0.88	0.818	0.388	6e-61
79570413	482	ATP synthase D chain-related protein [Ar	0.774	0.763	0.374	1e-52
297823743	509	hypothetical protein ARALYDRAFT_345641 [	0.751	0.701	0.370	1e-50
356530165	639	PREDICTED: uncharacterized protein LOC10	0.757	0.563	0.343	2e-47
449439795	392	PREDICTED: uncharacterized protein LOC10	0.677	0.821	0.390	5e-43

>gi|224087896|ref|XP_002308260.1| predicted protein [Populus trichocarpa] gi|222854236|gb|EEE91783.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/476 (49%), Positives = 322/476 (67%), Gaps = 47/476 (9%)

Query: 20  KTTTDDVAVGADPNHLINGQK-----DDVRSQASEPADIQNVQVDADRH--QSNGAESAN 72
           K + DDV+V A  N+  NGQ      D+   + S   D+ + + D + H  + NGA   +
Sbjct: 25  KASEDDVSVAAATNNNSNGQNHGNVNDNQVIEVSSNGDVVDAE-DFNGHYDKPNGAAPHS 83

Query: 73  LAEAERQHLLQREAMAI------LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK 126
            A  E    LQ E  ++       EET+K LR+E +SHIQKEATLE TV+QLQNE   + 
Sbjct: 84  AALQETIKHLQNETDSLTRTKDTFEETIKRLRDENDSHIQKEATLEETVKQLQNESASHT 143

Query: 127 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 186
           +K A+LE+TI QL+  N+L +QKEAT E+TIKQL+ +ND H+Q+E  LE  I  LQSEK+
Sbjct: 144 QKEASLEDTINQLRSVNNLCIQKEATFEDTIKQLKTENDSHLQKEADLEKRIVQLQSEKD 203

Query: 187 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSV 246
           FWLQKEA   +K++ L+DE AAL    AS+ E+++LLE+DKDSWT  E+ +KETIA +++
Sbjct: 204 FWLQKEAGFGEKLNHLQDEKAAL----ASIGEKIRLLESDKDSWTISENTTKETIARMNI 259

Query: 247 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL-------SSDESKKLQHATSEQK 299
           D+T+LRMQVVELE+SRN+L++EN+QLKE++S+L+ QL       S   + +L    +E++
Sbjct: 260 DVTRLRMQVVELEDSRNSLVKENQQLKESISNLKLQLQNIDTSVSFANTSELGKLGAEKE 319

Query: 300 DFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAV---TALTS 356
           + ++QIEAA AL+DKLITEN +LVEKVN+L +KLD Q  AA  SSA G   +   + L +
Sbjct: 320 ELNSQIEAACALVDKLITENADLVEKVNELYIKLDHQGTAASFSSATGRGVIVRNSELAN 379

Query: 357 DTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQI 416
            T PM++S+ N+++L ++LE+               +  +P  +V  SSEA  SGEIVQI
Sbjct: 380 GTHPMADSNANLTALGHKLES---------------LEVEPAVVVQYSSEA-GSGEIVQI 423

Query: 417 PLDDKEVQDLELQVVESYTD-KVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNK 471
           PLDD EV DLE+Q  E  TD K  AVPLTDAPLIGAPFRL+SFVAKYVSG DLVN+
Sbjct: 424 PLDDNEVPDLEMQAAE--TDYKSGAVPLTDAPLIGAPFRLISFVAKYVSGGDLVNR 477

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575616|ref|XP_002528708.1| conserved hypothetical protein [Ricinus communis] gi|223531880|gb|EEF33697.1| conserved hypothetical protein [Ricinus communis]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 241/491 (49%), Positives = 320/491 (65%), Gaps = 62/491 (12%)

Query: 18  QTKTTTDDVAVGADPNHLINGQKDDVRSQASEPADIQN------VQVDA-DRHQSNGAES 70
           Q+KTT DD       +H  NG   +  +Q ++ A+IQN        VD  DRHQ+ G E 
Sbjct: 22  QSKTTEDDAVFVGGVDHQ-NGASSNGNNQVTDLAEIQNGDVQNAANVDGFDRHQNTGTEI 80

Query: 71  ANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVA 130
           +   EAE+Q   QREA  I EET+K L+NE + HIQKEA L  ++++LQ E D+ + K  
Sbjct: 81  SISVEAEKQQWFQREA--IFEETIKRLQNENDLHIQKEAILRKSIKELQEENDIQRRKQV 138

Query: 131 TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE------------------- 171
            LEET+++LQ  ND  +QKEATLEETIK+LRN ND  +Q+E                   
Sbjct: 139 MLEETVKELQNANDSALQKEATLEETIKELRNTNDSALQKEVKLEKTIKELRSAKDSALQ 198

Query: 172 --GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 229
              GL+  IA LQSE E +LQ +A LE+K+    +E+A+L +K ASLEE++K LE++KDS
Sbjct: 199 KEAGLKKKIAQLQSENELFLQTKAGLEEKLQLSLNENASLGLKEASLEEKIKQLESEKDS 258

Query: 230 WTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK 289
           WT  E+ +KETIA ++VD+T+LRMQVVELEESRN+LL+EN+QL EN+S L+ Q+ + E+ 
Sbjct: 259 WTLAENTTKETIARMNVDVTRLRMQVVELEESRNSLLKENQQLMENISDLQLQVQNLETN 318

Query: 290 KLQHATS-EQK-------DFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAG 341
               +TS EQK       D  +QIEAA AL+DKLITEN ELVEKVN+L +KLD+QS  A 
Sbjct: 319 ISSASTSCEQKKHALEGEDLESQIEAACALVDKLITENAELVEKVNELYIKLDQQSTTAT 378

Query: 342 LSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLV 401
            SS  G+  +T + +D+ P  +S +NMS + ++LE+   + V+          AD     
Sbjct: 379 ASS--GNAEITYI-ADSIP--QSDENMSVVVHKLES---LEVEHAAALPYAAEAD----- 425

Query: 402 LSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAK 461
                   SGEIVQIPLDD E++DLELQ VES  DK  AVP++DAPLIGAPFRL+SFVAK
Sbjct: 426 --------SGEIVQIPLDDNELRDLELQAVES--DKTEAVPISDAPLIGAPFRLISFVAK 475

Query: 462 YVSGADLVNKN 472
           YVSGADLV+K+
Sbjct: 476 YVSGADLVDKD 486

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139390|ref|XP_002323089.1| predicted protein [Populus trichocarpa] gi|222867719|gb|EEF04850.1| predicted protein [Populus trichocarpa]

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 215/436 (49%), Positives = 284/436 (65%), Gaps = 57/436 (13%)

Query: 52  DIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATL 111
           D+++     D+      +S+ LAEAE+Q  LQREA                       T 
Sbjct: 66  DVEDFNTHNDKPNGVAPQSSILAEAEKQWWLQREA-----------------------TF 102

Query: 112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE 171
           E T++QL++E D + +K  T EETI+QLQ +ND  +QKEAT E+TIKQL+ +NDLH+Q+E
Sbjct: 103 EETIKQLEDENDSHIQKEVTFEETIKQLQDENDSHIQKEATFEDTIKQLKTENDLHMQKE 162

Query: 172 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 231
            GLEM I  LQ EK+FW  KEA LE+K++ L DE AAL +K ASLEE++  L+++KDSW 
Sbjct: 163 AGLEMKIMQLQREKDFWFLKEAGLEEKLNLLLDEKAALGLKLASLEEKIGQLDSEKDSWA 222

Query: 232 QMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL-------- 283
             E+ +KE +  +++DIT LRMQVVELE SRN+L++EN+QLKE+VS L+ QL        
Sbjct: 223 VSENTTKEIVGRMNIDITSLRMQVVELEYSRNSLVKENQQLKESVSDLKLQLQNVETQQS 282

Query: 284 -SSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGL 342
            SS  + +L    +E++D ++QIEAA AL+DKLITEN ELVEKVN+L +KLD+Q  AA L
Sbjct: 283 ISSANTSELGKNDAEKEDLNSQIEAACALVDKLITENAELVEKVNELYIKLDQQKAAASL 342

Query: 343 SSAIGSDAV---TALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPP 399
           SS+ GSD +   + L + T PMSESS++   L +                   + ADPP 
Sbjct: 343 SSSAGSDVILRNSELANGTPPMSESSESALGLKSE-----------------SLDADPPA 385

Query: 400 LVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFV 459
            VL  S    + EIVQIPLDD EV D+E+Q      DK + VPLTDAPLIGAPFRL+SFV
Sbjct: 386 AVLPQSSEPDAEEIVQIPLDDNEVPDVEMQA----EDK-SGVPLTDAPLIGAPFRLISFV 440

Query: 460 AKYVSGADLVNKNASN 475
           AKYVSGADLV+K+ SN
Sbjct: 441 AKYVSGADLVSKDDSN 456

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741755|emb|CBI32887.3| unnamed protein product [Vitis vinifera]

 Score =  320 bits (821), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 227/499 (45%), Positives = 317/499 (63%), Gaps = 62/499 (12%)

Query: 1   MEDEKKKKRNKKKKNNKQTKTTTDDVAVGA-----DPNHL---INGQKDDVRSQASEPAD 52
           MEDEKKKK+NKKKKN +   +    V VG      D NHL    +G ++ +       AD
Sbjct: 1   MEDEKKKKKNKKKKNKQHKASEGPAVGVGEEIASLDENHLSTQTHGNQESI-------AD 53

Query: 53  IQN--VQ---VDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQK 107
           +QN  VQ   VD + H +NG +S+ L EAE+Q  LQREA   L+E +K L N++E H QK
Sbjct: 54  VQNRDVQKENVDLNGHCANGTDSSILVEAEKQKWLQREAS--LQERIKQLENDKELHTQK 111

Query: 108 EATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 167
           E+ L         E D                ++Q    +++EATLEE IKQL+++NDLH
Sbjct: 112 ESILA--------EAD----------------KKQ---WLKREATLEERIKQLQDENDLH 144

Query: 168 IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK 227
           +Q+E GLEM I  LQ+EK  W+QKEA LE KI QL DE++ L++K ASLEE+++  E ++
Sbjct: 145 MQKEAGLEMRIVQLQTEKHSWIQKEATLEGKIQQLLDENSTLSVKWASLEEKVEHQERER 204

Query: 228 DSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS-D 286
           +SW   E+ S+E I+ L+ +  +L+ QV+ELEE R N+LQEN+ LKE VSSL+ Q+   +
Sbjct: 205 NSWVLKENSSREIISSLNDENRKLQGQVMELEEFRINILQENQLLKEKVSSLQLQIKELE 264

Query: 287 ESKKLQHATSE-------QKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVA 339
           ES    HA++E         D + Q EAA  LI+KL +EN +LVEKVN+L ++LD+  VA
Sbjct: 265 ESVSSAHASTEITKHASKHVDLNPQTEAATVLIEKLTSENADLVEKVNELYIELDQLRVA 324

Query: 340 AGLSSAIGSD-AVTALTSD--TEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHAD 396
           AGLSSAIG D  + AL +    + MSE +DN S+ + R++    V + ++R   +    +
Sbjct: 325 AGLSSAIGLDKKIGALQNSNVADHMSEPTDNSSASSERMDPLEAVPMNDERISADIEDVE 384

Query: 397 PPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLV 456
              ++ +SSE + SGEIVQIPLD+ E ++LELQ  E+  D+   VP+TDAPLIGAPFR +
Sbjct: 385 QTAVIPNSSETDDSGEIVQIPLDENEARELELQAAEN--DRNTTVPITDAPLIGAPFRFI 442

Query: 457 SFVAKYVSGADLVNKNASN 475
           SFVAKYVSGADLV K+++N
Sbjct: 443 SFVAKYVSGADLVGKSSTN 461

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566804|ref|XP_003551617.1| PREDICTED: uncharacterized protein LOC100796148 [Glycine max]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 182/416 (43%), Positives = 261/416 (62%), Gaps = 15/416 (3%)

Query: 72  NLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVAT 131
           NL E    H+ Q+E ++  +ET+K L+ E E HIQ+EA  + T++ L+ E D   +KV +
Sbjct: 236 NLKEKNDVHV-QKETLS--QETIKKLKEENEVHIQEEAISKETIKNLKEENDKLLQKVVS 292

Query: 132 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 191
           LEE I  LQ  N+L+ QK  +LE  I  L N+     ++E GLE  IA LQSE    LQK
Sbjct: 293 LEEVINNLQTDNELQTQKHESLERKINLLENELSSFSEKEVGLETRIAQLQSENNSLLQK 352

Query: 192 EAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQL 251
           EA L ++ +QL +E A L++K  SLE+++ LLE+D +S  + E+ +KETI+ L+ +I  L
Sbjct: 353 EATLVERTNQLLNEKAVLSLKGESLEQKIYLLESDLNSLVKKENSTKETISNLNGNIAVL 412

Query: 252 RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHAT---------SEQKDFS 302
           + QV ELEESRNNL  EN+QL+E VSSL+S + + E+      +         SE +D  
Sbjct: 413 QAQVEELEESRNNLFLENQQLREKVSSLQSTVQNHENSNTSSCSWDASVKDLASENEDLK 472

Query: 303 TQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTE--- 359
           ++IEAA  L++KL+ EN ELVEKV +L V+LD +S   G S    S+ +T     T    
Sbjct: 473 SEIEAAFTLVEKLMAENAELVEKVTELCVELDHRSAEVGHSGVTESNGMTEFVKPTGVAI 532

Query: 360 PMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLD 419
           P+ ES++  S  + +L +    +VK++ N  +  H        S   A+ +GEIVQIPLD
Sbjct: 533 PLPESAEYASVSSPKLNSLEETSVKDNGNSNDAKHVVGVTSNSSLVSADDAGEIVQIPLD 592

Query: 420 DKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKNASN 475
           D E+QD+ELQ  ++  +   AVP+TDAPLIGAPFRL+SFVA +VSGADLVN+++SN
Sbjct: 593 DNEIQDIELQDAKNVENDADAVPITDAPLIGAPFRLISFVANFVSGADLVNQSSSN 648

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481328|ref|XP_002279159.2| PREDICTED: uncharacterized protein LOC100249907 [Vitis vinifera]

 Score =  241 bits (615), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 219/563 (38%), Positives = 298/563 (52%), Gaps = 145/563 (25%)

Query: 1   MEDEKKKKRNKKKKNNKQTKTTTDDVAVGA-----DPNHL---INGQKDDVRSQASEPAD 52
           MEDEKKKK+NKKKKN +   +    V VG      D NHL    +G ++ +       AD
Sbjct: 1   MEDEKKKKKNKKKKNKQHKASEGPAVGVGEEIASLDENHLSTQTHGNQESI-------AD 53

Query: 53  IQN--VQ---VDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQK 107
           +QN  VQ   VD + H +NG +S+ L EAE+Q  LQREA   L+E +K L N++E H QK
Sbjct: 54  VQNRDVQKENVDLNGHCANGTDSSILVEAEKQKWLQREAS--LQERIKQLENDKELHTQK 111

Query: 108 EATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH 167
           E+ L         E D  +                    +++EATLEE IKQL+++NDLH
Sbjct: 112 ESILA--------EADKKQ-------------------WLKREATLEERIKQLQDENDLH 144

Query: 168 IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK 227
           +Q+E GLEM I  LQ+EK  W+QKEA LE KI QL DE++ L++K               
Sbjct: 145 MQKEAGLEMRIVQLQTEKHSWIQKEATLEGKIQQLLDENSTLSVK--------------- 189

Query: 228 DSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS-D 286
             W      S+E I+ L+ +  +L+ QV+ELEE R N+LQEN+ LKE VSSL+ Q+   +
Sbjct: 190 --WNS----SREIISSLNDENRKLQGQVMELEEFRINILQENQLLKEKVSSLQLQIKELE 243

Query: 287 ESKKLQHATSE-------QKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVA 339
           ES    HA++E         D + Q EAA  LI+KL +EN +LVEKVN+L ++LD+  VA
Sbjct: 244 ESVSSAHASTEITKHASKHVDLNPQTEAATVLIEKLTSENADLVEKVNELYIELDQLRVA 303

Query: 340 AGLSSAIGSD-AVTALTSD--TEPMSESSDNMSSLNNRLETQGVVAVK----------ED 386
           AGLSSAIG D  + AL +    + MSE +DN S+ + R+E+   V +            D
Sbjct: 304 AGLSSAIGLDKKIGALQNSNVADHMSEPTDNSSASSERMESVEAVPIHGQSSQEAVPMHD 363

Query: 387 RNGINGVHADP-------PPLVLSSSEA-----EYSGEIVQI---------PLDDK---- 421
            N    V           P L  SS EA     + S E V I         P++D+    
Sbjct: 364 ENSQEAVPIHDQRSLEAVPMLDESSQEAVPIHDQRSIEAVPINDKSPLEAVPMNDERISA 423

Query: 422 EVQDLELQVV---ESYTD---KVAAVPL-----------------------TDAPLIGAP 452
           +++D+E   V    S TD   ++  +PL                       TDAPLIGAP
Sbjct: 424 DIEDVEQTAVIPNSSETDDSGEIVQIPLDENEARELELQAAENDRNTTVPITDAPLIGAP 483

Query: 453 FRLVSFVAKYVSGADLVNKNASN 475
           FR +SFVAKYVSGADLV K+++N
Sbjct: 484 FRFISFVAKYVSGADLVGKSSTN 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79570413|ref|NP_181392.2| ATP synthase D chain-related protein [Arabidopsis thaliana] gi|51968994|dbj|BAD43189.1| hypothetical protein [Arabidopsis thaliana] gi|330254458|gb|AEC09552.1| ATP synthase D chain-related protein [Arabidopsis thaliana]

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 149/398 (37%), Positives = 239/398 (60%), Gaps = 30/398 (7%)

Query: 75  EAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEE 134
           E E +  +Q+EA+  LEE + HL+ E E+H+  EA LEG +  L+ E + + +  A LEE
Sbjct: 113 ETENEAHIQKEAL--LEERLVHLKTENEAHVHNEALLEGKLLHLRTENEDHIQNEALLEE 170

Query: 135 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA 194
            +  L+ +N+  +Q EA LEE +   R +N+ H Q E  LE  +   +++ +  L++ ++
Sbjct: 171 KLLHLRTENEAHIQNEALLEERLLHFRTENEAHKQNEEKLEERLVQYKNKNDMLLREMSS 230

Query: 195 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQ 254
            E ++ QL DE +    K ASLE++++ L+ D++S    E  S+E I+ L+ +I +LR Q
Sbjct: 231 TEAQMRQLLDERSTFTQKEASLEKKVQQLQHDEESLVAEEKSSREMISSLNNEIARLRAQ 290

Query: 255 VVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDK 314
           V ELE+S++NLL++N+ LKE +S+L+ Q  + +S       + +++ ++QIEAA  L++K
Sbjct: 291 VTELEKSKSNLLEQNQSLKETISNLQVQHENHDSNA---KGASEEELNSQIEAACTLVEK 347

Query: 315 LITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNR 374
           LITEN +LVEKVN+L +KL++   A+  S AI  +   +L  +  P+    D +  ++N 
Sbjct: 348 LITENADLVEKVNELCIKLNQSQHASPESLAIEVEKSESL--EEIPI---HDELIRIDNS 402

Query: 375 LETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESY 434
            +     ++K  RN   G   +  PL L++     +GE+           D+E QV  + 
Sbjct: 403 RDMD-TASIK--RNFSEGEIEETVPLSLNA-----NGEV-----------DVESQVAVAG 443

Query: 435 TDKV-AAVPLTDAPLIGAPFRLVSFVAKYVSGADLVNK 471
            D++ A VPL DAPLIGAPFRLVSFVA+YVSGADL  K
Sbjct: 444 EDEINAGVPLADAPLIGAPFRLVSFVARYVSGADLAAK 481

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823743|ref|XP_002879754.1| hypothetical protein ARALYDRAFT_345641 [Arabidopsis lyrata subsp. lyrata] gi|297325593|gb|EFH56013.1| hypothetical protein ARALYDRAFT_345641 [Arabidopsis lyrata subsp. lyrata]

 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 156/421 (37%), Positives = 234/421 (55%), Gaps = 64/421 (15%)

Query: 88  AILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRM 147
            +LEET+K LR E  S++QKEA LE  +  L+ E + + +  A LEE +  L+ +N+   
Sbjct: 115 VLLEETIKQLREENGSYLQKEAFLEERLVHLKTENEAHIQNEALLEEKLLHLRTENEAHT 174

Query: 148 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE--------------------- 186
           Q EA LEE +  LR +N+ HIQ E  LE  + +L+SE E                     
Sbjct: 175 QNEALLEEKLLHLRTENEDHIQNEARLEERLLHLRSENEAHKQNEDHLEVGGQNNIVFMQ 234

Query: 187 ---------------FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 231
                            L++ ++ E ++ QL DE +    K  SLE++++ L+ D++S  
Sbjct: 235 EKLEERLVQYKNKNDMLLREMSSTEAQMRQLLDERSTFTQKEVSLEKKVQQLQHDEESLV 294

Query: 232 QMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL 291
             E  S+E I+ L+ +I +LR QV ELEES++NLL++N+ LKE VSSL+ Q  + +S   
Sbjct: 295 AEEKSSREMISSLNNEIARLRAQVTELEESKSNLLEQNQSLKETVSSLQVQHENHDSNA- 353

Query: 292 QHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAV 351
               + +++ ++QIEAA  L++KLITEN ELVEKVN+L +KL++   A+  S AI  +  
Sbjct: 354 --KGASEEELNSQIEAACTLVEKLITENAELVEKVNELCIKLNQSQHASPESLAIEVEKS 411

Query: 352 TALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSG 411
            +L  +  P+    D +  ++N  +    +     RN   G   +  PL L++     +G
Sbjct: 412 ESL--EEIPI---HDELIRIDNSKDMDTALI---KRNLSEGEIEETVPLSLNA-----NG 458

Query: 412 EIVQIPLDDKEVQDLELQVVESYTDKVAA-VPLTDAPLIGAPFRLVSFVAKYVSGADLVN 470
           E+           D+E QVV +  D+V+A VPL DAPLIGAPFRLVSFVA+YVSGADL  
Sbjct: 459 EV-----------DVESQVVVAGEDEVSAGVPLADAPLIGAPFRLVSFVARYVSGADLAA 507

Query: 471 K 471
           K
Sbjct: 508 K 508

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530165|ref|XP_003533654.1| PREDICTED: uncharacterized protein LOC100811378 [Glycine max]

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 151/440 (34%), Positives = 227/440 (51%), Gaps = 80/440 (18%)

Query: 72  NLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVAT 131
           NL E    H+ Q+E ++  +ET++ L+ E E HIQKEA  + T+++ + E D   +K  +
Sbjct: 241 NLKEKNDMHM-QKETLS--QETIRKLKEENEGHIQKEAISKETIKKFEEENDKLVQKETS 297

Query: 132 LEETIQQLQRQNDLRMQKEATLE----------------------------ETIKQLRNQ 163
           LE  I QLQ +N+  +QKE  ++                            E+++ L  +
Sbjct: 298 LEMRIAQLQSENNSLLQKEYIIDGILDLGPNPDHWAEQNKDQLLDPSPKEMESLEGLYQK 357

Query: 164 NDL------HIQR--EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 215
             L      +I R    GLE   A L SE    LQKEA L ++ +QL +E   L++K  S
Sbjct: 358 AALWRVMFSYIGRRLHVGLETRFAQLHSENNSLLQKEATLVERTNQLLNEKEVLSLKGES 417

Query: 216 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN 275
           LE+++ LLE+D  S  + E+ +K+TI+ L+ +I  L++Q +                   
Sbjct: 418 LEQKIYLLESDLSSLVEKENSTKDTISKLNGNIAVLQVQDL------------------- 458

Query: 276 VSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 335
                               SE KD  ++IEAA  L++KL+ EN ELVEKV +L V+LD 
Sbjct: 459 -------------------ASENKDLKSEIEAAFTLVEKLMAENAELVEKVTELCVELDH 499

Query: 336 QSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGINGVHA 395
           QS     +        T +     P  ES++  S    +L +    +VK++ N  N    
Sbjct: 500 QSAVTEPNEMTEFAKPTGVAI---PPPESAEYASVSAPKLNSLEETSVKDNGNSFNDAKH 556

Query: 396 DPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDAPLIGAPFRL 455
               +  SS  ++ +GEIVQIPLDD E+QD+ELQ  ++  +   AVP+TDAPLIGAPFRL
Sbjct: 557 VVGVMSNSSLLSDDAGEIVQIPLDDNEIQDIELQDAKNVENDADAVPITDAPLIGAPFRL 616

Query: 456 VSFVAKYVSGADLVNKNASN 475
           +SFVA +VSGADLV+ ++SN
Sbjct: 617 ISFVANFVSGADLVDPSSSN 636

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439795|ref|XP_004137671.1| PREDICTED: uncharacterized protein LOC101221440 [Cucumis sativus] gi|449497171|ref|XP_004160333.1| PREDICTED: uncharacterized LOC101221440 [Cucumis sativus]

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 130/333 (39%), Positives = 197/333 (59%), Gaps = 11/333 (3%)

Query: 149 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA 208
           K+A L++TIK L  +N++HI+R   L++ +   + EK  WLQKE AL  KI  L+++  A
Sbjct: 62  KDAKLDDTIKHLHEENNIHIKRMADLDLKLVECEGEKYSWLQKEEALMDKIRNLQEDKTA 121

Query: 209 LNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE 268
           L+++ A L   +KLLE DK S    E  S+ETI   + DI++L+ QVVELEE + +LL E
Sbjct: 122 LDLEGARLLNIIKLLERDKASLILDEKSSRETIVDKNKDISRLQAQVVELEEQKRDLLHE 181

Query: 269 NRQLKENVSSLRSQLSSDE---SKKLQHATSE--QKDFSTQIEAAGALIDKLITENIELV 323
           N+QL   V+  +S+L + E   S    H++    ++  ++Q++AA  L+DKLITEN EL+
Sbjct: 182 NKQLTGKVADYQSKLLNLERKISSTYIHSSDRVTKEILNSQVDAARILVDKLITENAELI 241

Query: 324 EKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDN--MSSLNNRLETQGVV 381
            KVN+L V+L R +    L S +  D +    +DT   +ES     ++S+ +      + 
Sbjct: 242 GKVNELFVELQRVT-KTELPSGVVPDQMATEATDTTTFNESEPPVILNSVTSGKSLDALK 300

Query: 382 AVKEDRNGINGVHADPPPLVLSS--SEAEYSGEIVQIPLDDKEVQDLELQVVESYTDKVA 439
           +V    + I G   D     ++S  S    +GEI QI L   E Q+   ++  +  D+  
Sbjct: 301 SVSIHSHSIGGDFVDLGSDFMASEASMPMAAGEIEQIQLHQFEDQNGTRELPATEIDE-K 359

Query: 440 AVPLTDAPLIGAPFRLVSFVAKYVSGADLVNKN 472
            V L+DAPLIGAP+RL+SF+AKYVSGADLV K+
Sbjct: 360 DVLLSDAPLIGAPYRLISFMAKYVSGADLVGKS 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	475
TAIR|locus:2064168	482	AT2G38580 "AT2G38580" [Arabido	0.698	0.688	0.329	3.5e-43
MGI|MGI:3041210	718	Ccdc157 "coiled-coil domain co	0.778	0.515	0.228	8.3e-12
UNIPROTKB|F1PWZ2	1941	MYH7B "Uncharacterized protein	0.833	0.204	0.215	3.8e-10
RGD|1305732	1679	Gcc2 "GRIP and coiled-coil dom	0.658	0.186	0.214	6.9e-10
MGI|MGI:2139395	999	Golga2 "golgi autoantigen, gol	0.751	0.357	0.240	9.9e-10
MGI|MGI:1924298	692	Ccdc41 "coiled-coil domain con	0.669	0.459	0.221	1.6e-09
RGD|620282	998	Golga2 "golgin A2" [Rattus nor	0.751	0.357	0.240	1.6e-09
UNIPROTKB|K7GMY0	626	LOC100515063 "Uncharacterized	0.776	0.589	0.221	2.3e-09
UNIPROTKB|I3LED2	703	LOC100515063 "Uncharacterized	0.776	0.524	0.221	2.8e-09
UNIPROTKB|K7GSC4	713	LOC100515063 "Uncharacterized	0.776	0.517	0.221	2.8e-09

TAIR|locus:2064168 AT2G38580 "AT2G38580" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 114/346 (32%), Positives = 196/346 (56%)

Query:    69 ESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK 128
             E+    E E +  +Q+EA+  LEE + HL+ E E+H+  EA LEG +  L+ E + + + 
Sbjct:   107 ENVRRLETENEAHIQKEAL--LEERLVHLKTENEAHVHNEALLEGKLLHLRTENEDHIQN 164

Query:   129 VATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 188
              A LEE +  L+ +N+  +Q EA LEE +   R +N+ H Q E  LE  +   +++ +  
Sbjct:   165 EALLEEKLLHLRTENEAHIQNEALLEERLLHFRTENEAHKQNEEKLEERLVQYKNKNDML 224

Query:   189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDI 248
             L++ ++ E ++ QL DE +    K ASLE++++ L+ D++S    E  S+E I+ L+ +I
Sbjct:   225 LREMSSTEAQMRQLLDERSTFTQKEASLEKKVQQLQHDEESLVAEEKSSREMISSLNNEI 284

Query:   249 TQLRMQVVELEESRNNLLQENRQLKENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAA 308
              +LR QV ELE+S++NLL++N+ LKE +                   SE+ + ++QIEAA
Sbjct:   285 ARLRAQVTELEKSKSNLLEQNQSLKETISNLQVQHENHDSNA--KGASEE-ELNSQIEAA 341

Query:   309 GALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNM 368
               L++KLITEN +LVEKVN+L +KL++   A+  S AI  +   +L  +  P+    D +
Sbjct:   342 CTLVEKLITENADLVEKVNELCIKLNQSQHASPESLAIEVEKSESL--EEIPIH---DEL 396

Query:   369 SSLNNRLETQGVVAVKEDRNGINGVHADPPPLVLSSS-EAEYSGEI 413
               ++N  +     ++K  RN   G   +  PL L+++ E +   ++
Sbjct:   397 IRIDNSRDMD-TASIK--RNFSEGEIEETVPLSLNANGEVDVESQV 439

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

MGI|MGI:3041210 Ccdc157 "coiled-coil domain containing 157" [Mus musculus (taxid:10090)]

 Score = 192 (72.6 bits), Expect = 8.3e-12, P = 8.3e-12
 Identities = 90/394 (22%), Positives = 163/394 (41%)

Query:    38 GQKDDVRSQASEPAD-IQNVQVDADRHQSNGAESANLAEAER-QHLLQREAMAILEETVK 95
             GQKD +R Q S+    +Q  Q    R Q+  AE   LA+ E  +H L  E    L+  V 
Sbjct:   309 GQKDGLRKQVSKLEQALQQEQGQRQR-QTEEAERT-LAKCEHDRHQLLTETCD-LKTKVA 365

Query:    96 HLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEE 155
              L  + +   +    +E   QQL+ E     E+ A  E  +QQL+ Q  L   +     +
Sbjct:   366 VLEGDLKQQQKSIQAMEAKAQQLEEE----GERRAAAERQVQQLEEQVQLLAGRLDGASQ 421

Query:   156 TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS 215
              I+    + D    R   +  +  +LQ+++   LQ+   L+Q+  +LR        +R+ 
Sbjct:   422 QIRWASTELDKEKARVDSMVRHQESLQAKQRTLLQQLDCLDQEREELRGSLDEAEAQRSE 481

Query:   216 LEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN 275
             LEE+L+ L++D++         +E +  L  +   L     +L+ + + L Q+  +LKE 
Sbjct:   482 LEEQLQSLQSDREQEQCQLQAQQELLQSLQQEKQDLEQVTTDLQLTISELRQQLEELKER 541

Query:   276 --VXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIEL---VEKVNDLS 330
               +             ++Q +++  +D   Q++A    I  L  EN  L   + K+ +++
Sbjct:   542 ERLLVAFPDLHQPEEAQIQSSSNVTQDMERQVQANAIRIQVLQEENKRLQSMLTKIREVA 601

Query:   331 VKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGI 390
              +   + V  G    + S     +   T P +++    S L  R ++ G       R   
Sbjct:   602 QQGGLKMVPQG---QLWSPPYKGIQGATPP-AQAQSAFSGLTGRRQSPGSRTSSTGRTHP 657

Query:   391 NGVHADP---P---PLVLSSSEAEYSGEIVQIPL 418
              G+   P   P   P   S  +  +S    Q P+
Sbjct:   658 GGLRTSPSRQPGGLPSKFSLGDGSHSASCTQNPI 691

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1PWZ2 MYH7B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 3.8e-10, P = 3.8e-10
 Identities = 92/427 (21%), Positives = 188/427 (44%)

Query:    41 DDVRSQAS-EPADIQNVQVDAD----RHQSNGAESANLAEAERQHLLQR--EAMAILEET 93
             +D  S+A  +  ++Q   VDA     R Q+   E + L E E++ L+ +     A   ++
Sbjct:  1260 EDQLSEAKVKVEELQRQLVDASTQRGRLQTESGELSRLLE-EKESLISQLSRGKASATQS 1318

Query:    94 VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQR----QN----DL 145
             ++ LR + E   + ++ L   VQ L+++CDL +E+     E   +LQR     N      
Sbjct:  1319 LEELRRQLEEESKAKSALAHAVQALRHDCDLLREQHEEEAEAQAELQRLLSKANAEVAQW 1378

Query:   146 RMQKEA-TLEET--IKQLRNQNDLHIQR-EGGLEMNIANLQS-EK-EFWLQKEAA-LEQK 198
             R + EA  ++ T  +++ + +  L +Q  E G+E   A   S EK +  LQ E+  +  +
Sbjct:  1379 RSKYEADAIQRTEELEEAKKKLALRLQEAEEGVEAAHAKCSSLEKAKLRLQTESEDVTLE 1438

Query:   199 ISQLRDESAALNMKRASLEERLK-LLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE 257
             + +    +AAL+ K+  LE  L+     ++++  ++E+  +E   GL  ++ +LR    E
Sbjct:  1439 LERATSAAAALDKKQRHLERALEERRRQEEETQRELEAAQREA-RGLGTELFRLRHSHEE 1497

Query:   258 LEESRNNLLQENRQLKENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLIT 317
               E+   L +EN+ L+E +            K +Q     +K    +     A +++   
Sbjct:  1498 ALEALETLKRENKNLQEEISDLTDQVSLSG-KSIQELEKAKKALEGEKSELQAALEE--A 1554

Query:   318 ENIELVEKVNDLSVKLDRQSVAAGLSSAIGS--DAVTALTSDTEPMSESSDNMSSLNNRL 375
             E    +E+   L ++L+   V A +   +    +  T L  + +   ES         R 
Sbjct:  1555 EGALELEETKTLRIQLELSQVKAEVDRKLAEKDEECTNLRRNHQRAVESLQASLDAETRA 1614

Query:   376 ETQGVVAVKEDRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEV-QDLELQVVESY 434
               + +   K+    +N +          + EA+ +  ++Q  L +++  +D E ++V   
Sbjct:  1615 RNEALRLKKKMEGDLNDLELQLGHATRQAMEAQAATRLLQAQLKEEQAGRDEEQRLVAEL 1674

Query:   435 TDKVAAV 441
              ++  A+
Sbjct:  1675 REQAQAL 1681

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

RGD|1305732 Gcc2 "GRIP and coiled-coil domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 6.9e-10, P = 6.9e-10
 Identities = 70/326 (21%), Positives = 142/326 (43%)

Query:    44 RSQASEPADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERES 103
             + QAS+  ++Q     A   +    E+ N  + E + LL +E ++ LE T+K+L+ +   
Sbjct:   505 QQQASDVHELQQKLRTAFNEKDALLETINRLQGENEKLLSQELVSELESTMKNLKADNSM 564

Query:   104 HI----QKEATL---EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEET 156
             ++    QK+  L   E  +  L  E D +  K+ T  E I  L ++ +   +    L E 
Sbjct:   565 YLASLGQKDTLLQELEAKISSLAEEKDDFISKIKTSREEIDDLHQKWEREQKLSVELREA 624

Query:   157 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL 216
              +Q    N    QR   L   +  +  EK    Q +  +  ++  + ++  AL+ K  SL
Sbjct:   625 AEQAAQHNSELRQRVSELTGKLDEILREKS---QNDQNIMVQMKTMTEDQEALSSKIKSL 681

Query:   217 EERLKLLEADKDSWTQ-MESVSKETIAGLSVDITQLRMQVVELEESRNNL--LQENRQLK 273
              E    L ++K   ++ +E++  +        + +   ++  + E R++L  L EN QL+
Sbjct:   682 YEENNRLHSEKVQLSRDLEALQSQQDFAYKEHVAEFEKKLQLMVEERDDLNKLLENEQLQ 741

Query:   274 ENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333
             ++             +      +E++D  T ++A G  +  +  E   LV + +   ++L
Sbjct:   742 KSFVKTQLYEFLKQMRPSILEDNEEEDVVTVLKAVGESLVTVKEEKHNLVFEYDARVLEL 801

Query:   334 DRQSVAAGLSSAIGSDAVTALTSDTE 359
             +R+       S +  + + AL  D+E
Sbjct:   802 ERRIKCLQEESVVQCEELRALVRDSE 827

GO:0000042 "protein targeting to Golgi" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0005802 "trans-Golgi network" evidence=ISO;ISS

GO:0006622 "protein targeting to lysosome" evidence=ISO;ISS

GO:0016020 "membrane" evidence=IEA

GO:0031023 "microtubule organizing center organization" evidence=ISO;ISS

GO:0034067 "protein localization to Golgi apparatus" evidence=ISO;ISS

GO:0034453 "microtubule anchoring" evidence=ISO;ISS

GO:0034499 "late endosome to Golgi transport" evidence=ISO;ISS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0042802 "identical protein binding" evidence=IEA;ISO

GO:0070861 "regulation of protein exit from endoplasmic reticulum" evidence=ISO;ISS

GO:0071955 "recycling endosome to Golgi transport" evidence=ISO;ISS

GO:0090161 "Golgi ribbon formation" evidence=ISO;ISS

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISO

MGI|MGI:2139395 Golga2 "golgi autoantigen, golgin subfamily a, 2" [Mus musculus (taxid:10090)]

 Score = 175 (66.7 bits), Expect = 9.9e-10, P = 9.9e-10
 Identities = 97/403 (24%), Positives = 172/403 (42%)

Query:    59 DADRHQSNGAES-ANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQ 117
             DAD  QS+ A + +NL E E +     E++  L + +  L +E  S+I  E      +++
Sbjct:    96 DADLTQSHDAGNCSNLME-ETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKE 154

Query:   118 LQNECD-----LYKEKVAT--LEETIQQLQRQND-----LRMQKEATLEETIKQ---LRN 162
             L+N        L    V    L  TI++L++QN      L  +K+   ++  K+   LR 
Sbjct:   155 LENRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGSLRE 214

Query:   163 QNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 222
             Q  +HIQ  G L    A LQ+      Q   A  QK  +  D ++ L   R  + E  + 
Sbjct:   215 QLQVHIQTIGILVSEKAELQTALAHTQQ---AARQKAGESEDLASRLQSSRQRVGELERT 271

Query:   223 LEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVXXXXXX 282
             L        Q +  +K+    L+ +   L++++ +  +S  +L Q+N +L+E +      
Sbjct:   272 LSTVSTQQKQADRYNKD----LTKERDALKLELYKNSKSNEDLRQQNSELEEKLRVLVAE 327

Query:   283 XXXXXX------KKLQHATSEQKDFSTQIEAAG-------ALIDK--LITENIELVEKVN 327
                         KKL+ +    + FS+Q  AAG       A+ ++  L T   +L+E + 
Sbjct:   328 KAAAQLGVEELQKKLEMSELLLQQFSSQSSAAGGNEQLQHAMEERAQLETHVSQLMESLK 387

Query:   328 DLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDR 387
              L V+ D+ +      SA+    V  +      + E  ++       LET  + A+   R
Sbjct:   388 QLQVERDQYAENLKGESAMWQQRVQQMAEQVHTLKEEKEHRERQVQELETS-LAAL---R 443

Query:   388 NGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQV 430
             + +       PP   S +E +  GE+ Q+    KE++ L  Q+
Sbjct:   444 SQMEEPPPPEPPAGPSEAEEQLQGEVEQL---HKELERLTGQL 483

GO:0000137 "Golgi cis cisterna" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO;IDA

GO:0005801 "cis-Golgi network" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0050772 "positive regulation of axonogenesis" evidence=IMP

GO:0051645 "Golgi localization" evidence=IMP

MGI|MGI:1924298 Ccdc41 "coiled-coil domain containing 41" [Mus musculus (taxid:10090)]

 Score = 171 (65.3 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 78/352 (22%), Positives = 151/352 (42%)

Query:    51 ADIQNVQVDADRHQSN--GAESANLAEAERQHLLQREAMAILEET--VKHLRNERESHIQ 106
             A+ Q+ ++ A+R +     +   N     + H   RE   +  E   +KH      + I+
Sbjct:   259 AEKQSAKLQAERLEKELQSSNEQNTCLISKLHRADREISTLASEVKELKHANKLEITDIK 318

Query:   107 KEAT-----LEGTVQQLQNECDLYKEKVATLEETIQQ-----LQRQNDLRMQKEATLEET 156
              EA      LE    ++Q+E D  +     L+ T++      +++  +L  + +A  EE 
Sbjct:   319 LEAARAKSELERERNKIQSELDGLQSDNEILKSTVEHHKALLVEKDRELIRKVQAAKEEG 378

Query:   157 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA-LEQKI--SQLRDESAALNMKR 213
              ++L    D  ++ E  L  ++  ++ E++ W Q E    E+K+  SQ+ +E+A   ++ 
Sbjct:   379 YQKLMVLQDEKLELENRLS-DLEKMKVERDVWRQSEKEQCEEKLRASQMAEEAARRELQS 437

Query:   214 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK 273
               L+ + +++  +K    ++E+      + L   I+ L++QV  L +S N+LL  N  LK
Sbjct:   438 TRLKLQQQIVNTEKAEKEKLEN------SELKQQISHLQIQVTSLTQSENDLLNSNHMLK 491

Query:   274 ENVXXXXXX--XXXXXXKKLQ---HATSEQKDFSTQIEAAGALIDKLITENIELVEKVND 328
             + V              +K Q     T E+K     +E    L ++ IT+     EK N 
Sbjct:   492 DMVERLKQECRNLRSQAEKAQLDVEKTLEEKQIQW-LEEKHKLHER-ITDR---EEKYNQ 546

Query:   329 LSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGV 380
                KL R + A     ++  + +  L    E +    + + + N  L  Q V
Sbjct:   547 AKEKLQRAATAQKKRKSLHENKLKRLQEKVEVLEAKKEELETENQVLNRQNV 598

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|620282 Golga2 "golgin A2" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 97/403 (24%), Positives = 171/403 (42%)

Query:    59 DADRHQSNGAES-ANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQ 117
             DAD  QS+ A + +NL E E +     E++  L + +  L +E  S+I  E      +++
Sbjct:    96 DADLIQSHDAGNCSNLLE-ETKTFSSTESLRQLSQQLNGLVSESTSYINGEGLTSSNMKE 154

Query:   118 LQNECD-----LYKEKVAT--LEETIQQLQRQND-----LRMQKEATLEETIKQ---LRN 162
             L++        L    V    L  TI++L++QN      L  +K+   ++  K+   LR 
Sbjct:   155 LESRYQELAVALDSSYVTNKQLSSTIEELKQQNQDTLDQLEKEKKDYQQKLAKEQGALRE 214

Query:   163 QNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 222
             Q  +HIQ  G L    A LQ+      Q   A  QK  +  D ++ L   R  + E  + 
Sbjct:   215 QLQVHIQTIGILVSEKAELQTALAHTQQ---AARQKAGESEDLASRLQSSRQRVGELERT 271

Query:   223 LEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVXXXXXX 282
             L        Q +  +K+    L+ +   L++++ +  +S  +L Q+N +L+E +      
Sbjct:   272 LSTVSTQQKQADRYNKD----LTKERDALKLELYKNGKSNEDLRQQNSELEEKLRVLVAE 327

Query:   283 XXXXXX------KKLQHATSEQKDFSTQIEAAGA--LIDKLITENIELVEKVNDL--SVK 332
                         KKL+ +    + FS+Q EA+G+   + + + E  +L   V  L  S+K
Sbjct:   328 KAAAQLGAEELQKKLEMSELLLQQFSSQSEASGSNEQLQQAMEERAQLESHVGQLMESLK 387

Query:   333 ---LDRQSVAAGLS--SAIGSDAVTALTSDTEPMSESSDNMSSLNNRLETQGVVAVKEDR 387
                ++R   A  L   SA+    V  +      + E  +   S    LE     ++ E R
Sbjct:   388 QLQVERDQYAENLKGESAMWQQRVQQMAEQVHALKEEKEQRESQVQELEA----SLAELR 443

Query:   388 NGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQV 430
             + +       PP   S +E    GE+ Q+    KE++ L  Q+
Sbjct:   444 SQMEEPPPPEPPTGPSEAEERLQGEVEQL---QKELEGLTGQL 483

GO:0000137 "Golgi cis cisterna" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA;ISO;IDA

GO:0005801 "cis-Golgi network" evidence=ISO;IDA

GO:0008150 "biological_process" evidence=ND

GO:0032403 "protein complex binding" evidence=IDA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0050772 "positive regulation of axonogenesis" evidence=ISO

GO:0051645 "Golgi localization" evidence=ISO

UNIPROTKB|K7GMY0 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 88/397 (22%), Positives = 172/397 (43%)

Query:    39 QKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAE--AERQHLLQREAMAILEETVKH 96
             ++ ++  Q  E    + +Q+++   Q     S+NL +     Q  + +E   + EE +K 
Sbjct:   237 ERSNLERQEHEELQQKVLQIESLLQQEKEL-SSNLQQKLCSFQEEMIKERN-LFEEELKQ 294

Query:    97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQ----QLQRQNDLRMQKEAT 152
               +E ++  QKE   E  V+QL+ E +   E++  LEE ++    +L++ +    Q    
Sbjct:   295 ALDELDNLQQKEEQAETLVKQLEKEAESRAEELKLLEEKLKGKEAELEKSDAAHTQATLL 354

Query:   153 LEETIKQ-LRNQNDLHIQREGGLEMNIANLQSEK--EFWLQKEAALEQKISQLRD-ESAA 208
             L+E     ++N  D+  Q E    +  + ++  K     LQ++ A  +K ++  D +   
Sbjct:   355 LQERYNSTVQNLGDVTAQFESYKTLTASEIEDLKLENASLQEKVAKAEKSTE--DVQHQI 412

Query:   209 LNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL-EESRNNLLQ 267
             L  + A+ E    LL+    S  +   + + T++ L   IT L+ Q+ +  E+ +  L +
Sbjct:   413 LETENANQEYARMLLDLQTKSALKEAEIKEITVSSLK-KITDLQNQLKQQGEDFKKQLEE 471

Query:   268 ENRQL-KENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKV 326
             E R++ KEN                +   ++ K F  Q++A  A    L+ E+ E  E++
Sbjct:   472 ETRKIEKENSMAELTEEMNKWRLLYEELYNKTKPFQLQLDAFEAEKQALLNEHGEAQEQL 531

Query:   327 NDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRL--ETQGVVAVK 384
             N L     R S A  L        +  +    +  S+    +S L  +L    Q    ++
Sbjct:   532 NKL-----RDSYAKLLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRTQLAKRKQSEAKLQ 586

Query:   385 EDRNGINGV-HADPPPLVLSSSEAEYSGEIVQIPLDD 420
             E+ N + G+ H DP    L  S+      +++ PL +
Sbjct:   587 EELNKVLGIKHFDPSKAFLHESKENL---VLKTPLKE 620

GO:0005540 "hyaluronic acid binding" evidence=IEA

UNIPROTKB|I3LED2 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 88/397 (22%), Positives = 172/397 (43%)

Query:    39 QKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAE--AERQHLLQREAMAILEETVKH 96
             ++ ++  Q  E    + +Q+++   Q     S+NL +     Q  + +E   + EE +K 
Sbjct:   303 ERSNLERQEHEELQQKVLQIESLLQQEKEL-SSNLQQKLCSFQEEMIKERN-LFEEELKQ 360

Query:    97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQ----QLQRQNDLRMQKEAT 152
               +E ++  QKE   E  V+QL+ E +   E++  LEE ++    +L++ +    Q    
Sbjct:   361 ALDELDNLQQKEEQAETLVKQLEKEAESRAEELKLLEEKLKGKEAELEKSDAAHTQATLL 420

Query:   153 LEETIKQ-LRNQNDLHIQREGGLEMNIANLQSEK--EFWLQKEAALEQKISQLRD-ESAA 208
             L+E     ++N  D+  Q E    +  + ++  K     LQ++ A  +K ++  D +   
Sbjct:   421 LQERYNSTVQNLGDVTAQFESYKTLTASEIEDLKLENASLQEKVAKAEKSTE--DVQHQI 478

Query:   209 LNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL-EESRNNLLQ 267
             L  + A+ E    LL+    S  +   + + T++ L   IT L+ Q+ +  E+ +  L +
Sbjct:   479 LETENANQEYARMLLDLQTKSALKEAEIKEITVSSLK-KITDLQNQLKQQGEDFKKQLEE 537

Query:   268 ENRQL-KENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKV 326
             E R++ KEN                +   ++ K F  Q++A  A    L+ E+ E  E++
Sbjct:   538 ETRKIEKENSMAELTEEMNKWRLLYEELYNKTKPFQLQLDAFEAEKQALLNEHGEAQEQL 597

Query:   327 NDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRL--ETQGVVAVK 384
             N L     R S A  L        +  +    +  S+    +S L  +L    Q    ++
Sbjct:   598 NKL-----RDSYAKLLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRTQLAKRKQSEAKLQ 652

Query:   385 EDRNGINGV-HADPPPLVLSSSEAEYSGEIVQIPLDD 420
             E+ N + G+ H DP    L  S+      +++ PL +
Sbjct:   653 EELNKVLGIKHFDPSKAFLHESKENL---VLKTPLKE 686

GO:0005540 "hyaluronic acid binding" evidence=IEA

UNIPROTKB|K7GSC4 LOC100515063 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 169 (64.5 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 88/397 (22%), Positives = 172/397 (43%)

Query:    39 QKDDVRSQASEPADIQNVQVDADRHQSNGAESANLAE--AERQHLLQREAMAILEETVKH 96
             ++ ++  Q  E    + +Q+++   Q     S+NL +     Q  + +E   + EE +K 
Sbjct:   324 ERSNLERQEHEELQQKVLQIESLLQQEKEL-SSNLQQKLCSFQEEMIKERN-LFEEELKQ 381

Query:    97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQ----QLQRQNDLRMQKEAT 152
               +E ++  QKE   E  V+QL+ E +   E++  LEE ++    +L++ +    Q    
Sbjct:   382 ALDELDNLQQKEEQAETLVKQLEKEAESRAEELKLLEEKLKGKEAELEKSDAAHTQATLL 441

Query:   153 LEETIKQ-LRNQNDLHIQREGGLEMNIANLQSEK--EFWLQKEAALEQKISQLRD-ESAA 208
             L+E     ++N  D+  Q E    +  + ++  K     LQ++ A  +K ++  D +   
Sbjct:   442 LQERYNSTVQNLGDVTAQFESYKTLTASEIEDLKLENASLQEKVAKAEKSTE--DVQHQI 499

Query:   209 LNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL-EESRNNLLQ 267
             L  + A+ E    LL+    S  +   + + T++ L   IT L+ Q+ +  E+ +  L +
Sbjct:   500 LETENANQEYARMLLDLQTKSALKEAEIKEITVSSLK-KITDLQNQLKQQGEDFKKQLEE 558

Query:   268 ENRQL-KENVXXXXXXXXXXXXKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKV 326
             E R++ KEN                +   ++ K F  Q++A  A    L+ E+ E  E++
Sbjct:   559 ETRKIEKENSMAELTEEMNKWRLLYEELYNKTKPFQLQLDAFEAEKQALLNEHGEAQEQL 618

Query:   327 NDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRL--ETQGVVAVK 384
             N L     R S A  L        +  +    +  S+    +S L  +L    Q    ++
Sbjct:   619 NKL-----RDSYAKLLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRTQLAKRKQSEAKLQ 673

Query:   385 EDRNGINGV-HADPPPLVLSSSEAEYSGEIVQIPLDD 420
             E+ N + G+ H DP    L  S+      +++ PL +
Sbjct:   674 EELNKVLGIKHFDPSKAFLHESKENL---VLKTPLKE 707

GO:0005540 "hyaluronic acid binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VI000910 hypothetical protein (477 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	475
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-13
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-08
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-05
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	4e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	5e-04
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	7e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.001
TIGR03185	650	TIGR03185, DNA_S_dndD, DNA sulfur modification pro	0.002
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	0.002
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	0.003
pfam00429	560	pfam00429, TLV_coat, ENV polyprotein (coat polypro	0.003
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.004
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 8/275 (2%)

Query: 64  QSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECD 123
           +S+ A+   L E E +       +  LEE +K L+NE  S       L   +++L+ + +
Sbjct: 660 RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLE 719

Query: 124 LYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS 183
             K ++A LEE ++QLQ +          LEE +++L  + +   +R   LE  + +L+ 
Sbjct: 720 ELKRELAALEEELEQLQSR-------LEELEEELEELEEELEELQERLEELEEELESLEE 772

Query: 184 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAG 243
                 ++   LE+K   L++E   L  +    E RL  LE + +S  Q     ++ I  
Sbjct: 773 ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEE 832

Query: 244 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFST 303
           L  +I +L  ++ ELEE    L +E  +LKE +  L ++       +L+    E+++   
Sbjct: 833 LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEE-LEDELKELEEEKEELEE 891

Query: 304 QIEAAGALIDKLITENIELVEKVNDLSVKLDRQSV 338
           ++    + + +L  E  +L E++ +L  KL+R  V
Sbjct: 892 ELRELESELAELKEEIEKLRERLEELEAKLERLEV 926

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 56/233 (24%), Positives = 99/233 (42%)

Query: 60  ADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQ 119
                   +    L E  RQ       +  L+  +  L  E E    +   LE  +++L+
Sbjct: 691 KSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750

Query: 120 NECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA 179
            E +  +E++  LEE ++ L+       ++   LEE  + L+ + +   +     E  + 
Sbjct: 751 EELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD 810

Query: 180 NLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKE 239
            L+ E E   Q+   LEQ+I +L +E   L  K   LEE L+ LE + +   +     + 
Sbjct: 811 ALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEA 870

Query: 240 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQ 292
               L  ++ +L  +  ELEE    L  E  +LKE +  LR +L   E+K  +
Sbjct: 871 EKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLER 923

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.8 bits (140), Expect = 9e-09
 Identities = 68/291 (23%), Positives = 116/291 (39%), Gaps = 36/291 (12%)

Query: 59  DADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQL 118
            A  + S       + E E +     E +A LE+ +  LR E E   ++   L   +++L
Sbjct: 665 SAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL 724

Query: 119 QNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNI 178
             +    ++ +A LE  ++QL+ +     ++   LE  I++L  +              +
Sbjct: 725 SRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER--------------L 770

Query: 179 ANLQSEKEFWLQKEAALEQKISQ--------------LRDESAALNMKRASLEERLKLLE 224
              + E      +   LE +I Q              LR E   LN + A+L ERL+ LE
Sbjct: 771 EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830

Query: 225 ADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 284
               +  +     +E I  LS DI  L  ++ ELEE    L  E   L    +SL   L+
Sbjct: 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890

Query: 285 SDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 335
                      SE ++ S ++    +   +L  E  EL EK+  L ++L+ 
Sbjct: 891 L--------LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 56.2 bits (136), Expect = 3e-08
 Identities = 68/308 (22%), Positives = 147/308 (47%), Gaps = 25/308 (8%)

Query: 90  LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK 149
           L E ++ L+ E +   ++   L   +Q+L+ + +  + +V+ LEE I++LQ++      +
Sbjct: 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE 296

Query: 150 EATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL 209
            + LE+  + LR +     ++   LE  +  L+S+ +   ++ A LE+K+ +L++E  +L
Sbjct: 297 ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL 356

Query: 210 NMKRASLEERLKLLEADKDSW-TQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQE 268
             +   LE  L+ LE+  +    Q+E++  + +A L + I  L  ++  LE     L   
Sbjct: 357 EAELEELEAELEELESRLEELEEQLETLRSK-VAQLELQIASLNNEIERLEARLERLEDR 415

Query: 269 NRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVND 328
             +L++ +  L  +L   E K+LQ           ++E     +++L  E   L E + +
Sbjct: 416 RERLQQEIEELLKKLEEAELKELQ----------AELEELEEELEELQEELERLEEALEE 465

Query: 329 LSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNMSSLNNRLE--TQGVVAVKED 386
           L  +L+               A+ A   +   +    D++  L   LE  ++GV A+ ++
Sbjct: 466 LREELEEA-----------EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKN 514

Query: 387 RNGINGVH 394
           ++G++G+ 
Sbjct: 515 QSGLSGIL 522

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 4e-08
 Identities = 50/256 (19%), Positives = 108/256 (42%), Gaps = 16/256 (6%)

Query: 84  REAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQN 143
           +E    LEE  + L    E   + +  LE   ++++      K ++  L E +++LQ + 
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEE----LKSELEELREELEELQEEL 290

Query: 144 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR 203
               ++   LE  I  LR + +        LE  +  L+ + E   ++    E  + +L 
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 204 DESAALNMKRASLEERLKLLEADKDS----WTQMESVSKETIAGLSVDITQLRMQVVELE 259
              A L   +  LEE+L  L  + +       +  +  +  +A +  ++ +L+ ++  LE
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410

Query: 260 ESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITEN 319
           E    L +    LKE +  L ++L   +        +E ++ + ++E     +++L    
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQ--------TELEELNEELEELEEQLEELRDRL 462

Query: 320 IELVEKVNDLSVKLDR 335
            EL  ++ +L  +L R
Sbjct: 463 KELERELAELQEELQR 478

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.4 bits (134), Expect = 5e-08
 Identities = 60/263 (22%), Positives = 127/263 (48%)

Query: 73  LAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL 132
           L E  RQ    R+ +A LE  V+ L        ++   LE  +++L+   +  +E++A  
Sbjct: 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780

Query: 133 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE 192
           E  I++L+ Q +   ++   L E + +LR +  L  +    L   + +L+       ++ 
Sbjct: 781 EAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840

Query: 193 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLR 252
             LE++I +L ++  +L  +   LEE ++ LE++ ++     +  +E +A L  ++ +L 
Sbjct: 841 EDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900

Query: 253 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALI 312
            ++ ELE  R+ L +E  +L+E ++ L  +L   E +         +++S  +E A AL 
Sbjct: 901 EELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALE 960

Query: 313 DKLITENIELVEKVNDLSVKLDR 335
           +K+  +  E   ++  L  K+  
Sbjct: 961 NKIEDDEEEARRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.5 bits (129), Expect = 2e-07
 Identities = 59/291 (20%), Positives = 122/291 (41%), Gaps = 22/291 (7%)

Query: 61  DRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQN 120
           D  +  G     + + E++    +E +  LEE +  L  E E+   +   LE  +++L+ 
Sbjct: 713 DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE 772

Query: 121 ECDLYKEKVATLE---------ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE 171
           +    +E +  LE         E   +L +  +   + EA L E  ++L   N L +++E
Sbjct: 773 DLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL---NRLTLEKE 829

Query: 172 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA-------SLEERLKLLE 224
             LE  I  LQ ++    ++  ++E++I  L  +   L  +          LE RL  L+
Sbjct: 830 -YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888

Query: 225 ADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 284
            ++D         +  I  L   I + R ++ EL+     L +E  ++++          
Sbjct: 889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEE--I 946

Query: 285 SDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 335
            +E   L+   +E +    +I A   +    I E  E+++++++L  K  +
Sbjct: 947 PEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK 997

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.6 bits (124), Expect = 8e-07
 Identities = 51/256 (19%), Positives = 113/256 (44%), Gaps = 6/256 (2%)

Query: 83  QREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQ 142
           +   +  L E ++ L+ E  S   +   +E  + +L  E      K+  +E+ I+QL+++
Sbjct: 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731

Query: 143 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS-- 200
            +   ++   LEE +  L  + +        LE  I  L+ +     +    LE ++S  
Sbjct: 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS 791

Query: 201 ---QLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE 257
              +++ E + L  + + +E RL+ +E   +  T  +   ++ I  L      L+ Q+  
Sbjct: 792 RIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS 851

Query: 258 LEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLIT 317
           +E+   NL  +  +L+E +  L + L  D   +L     E+ +   Q+      I++L  
Sbjct: 852 IEKEIENLNGKKEELEEELEELEAAL-RDLESRLGDLKKERDELEAQLRELERKIEELEA 910

Query: 318 ENIELVEKVNDLSVKL 333
           +  +  +++++L  KL
Sbjct: 911 QIEKKRKRLSELKAKL 926

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 48/233 (20%), Positives = 93/233 (39%), Gaps = 27/233 (11%)

Query: 69  ESANLAEAERQHLLQREAMAI--LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK 126
           E       E Q  L      I  LE  +  LR   E    +   LE  +++L+ + +  K
Sbjct: 277 EELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALK 336

Query: 127 EKVATLEETIQQLQRQ-----------NDLRMQKEATLEETIKQLRNQNDLHIQREGGLE 175
           E++   E  +++L++             +        LEE  + LR +          + 
Sbjct: 337 EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396

Query: 176 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES 235
             +  L+ E E        LE+++ +L +    L  +   LE  L+ L+ + +       
Sbjct: 397 NELEELKREIES-------LEERLERLSERLEDLKEELKELEAELEELQTELE------- 442

Query: 236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 288
              E +  L   + +LR ++ ELE     L +E ++L++ +SSL ++L   E+
Sbjct: 443 ELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEA 495

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 47/257 (18%), Positives = 111/257 (43%), Gaps = 13/257 (5%)

Query: 43  VRSQASEPADIQNVQVDADRHQSNGAE-SANLAEAERQHLLQREAMAILEETVKHLRNER 101
                   A++Q ++   +  +   +E    + E +++       ++ LE+  + LR   
Sbjct: 252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311

Query: 102 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLR 161
            +  ++   LE  +++L+++ D   E++A LEE +++L+ + +    +   LE  +++L 
Sbjct: 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371

Query: 162 NQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL- 220
           ++ +        LE  +  L+S+      + A+L  +I +L      L  +R  L++ + 
Sbjct: 372 SRLE-------ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424

Query: 221 ----KLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV 276
               KL EA+           +E +  L  ++ +L   + EL E      Q     +  +
Sbjct: 425 ELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL 484

Query: 277 SSLRSQLSSDESKKLQH 293
           + L+++L S E  +   
Sbjct: 485 AQLQARLDSLERLQENL 501

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.6 bits (116), Expect = 6e-06
 Identities = 37/189 (19%), Positives = 82/189 (43%), Gaps = 2/189 (1%)

Query: 51  ADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEAT 110
             ++ ++   +  +    E   L E   Q  L  E     EE  + L    E   +    
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQ--LLAELEEAKEELEEKLSALLEELEELFEA 380

Query: 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 170
           L   + +L+ E    + ++  L+  I+ L+ + +   ++   L+E +K+L  + +     
Sbjct: 381 LREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTE 440

Query: 171 EGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW 230
              L   +  L+ + E    +   LE+++++L++E   L  + +SLE RL  LEA++ + 
Sbjct: 441 LEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRAS 500

Query: 231 TQMESVSKE 239
             + +V + 
Sbjct: 501 QGVRAVLEA 509

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 42/218 (19%), Positives = 94/218 (43%), Gaps = 6/218 (2%)

Query: 125 YKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE 184
            +E    LE T + L+R  DL  + E  LE+  +Q          +    E+ +A L ++
Sbjct: 174 KEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAK 233

Query: 185 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGL 244
            +   ++   LE+++S+L +E   L  +    E+ ++ L+++ +   +     +E +  L
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293

Query: 245 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK------KLQHATSEQ 298
             +I +L  ++  L E    L  E  +L+E +  L+ ++ + + +       L+      
Sbjct: 294 KEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLL 353

Query: 299 KDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ 336
            +     E     +  L+ E  EL E + +   +L+ +
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAE 391

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 49/242 (20%), Positives = 101/242 (41%), Gaps = 12/242 (4%)

Query: 82  LQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQR 141
           ++    A+ EE  +  + E     Q+E  LE  ++ L+      +E+   LEE   +L  
Sbjct: 201 IEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLE 260

Query: 142 QNDLRMQKEATLEETIKQLRNQND---LHIQREGGLEMNIANLQSEKEFWLQKEAALEQK 198
              L ++     EE +++L    +     I+R   LE  I  L+ E E        LE+ 
Sbjct: 261 IESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEEL 320

Query: 199 ISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVEL 258
           + +L+     L      LE+    LE   +   ++  + +E +        +L  ++ EL
Sbjct: 321 LEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLK-------ELEERLEEL 373

Query: 259 EESRNNLLQENRQLKENVSSLRSQLSSDESK--KLQHATSEQKDFSTQIEAAGALIDKLI 316
           E+     L+  +QL+E +  L+ +L+   +   ++Q    E +    ++E     +++ I
Sbjct: 374 EKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEI 433

Query: 317 TE 318
            +
Sbjct: 434 KK 435

Length = 908

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 52/234 (22%), Positives = 104/234 (44%), Gaps = 20/234 (8%)

Query: 106 QKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND 165
           ++   LE  ++ L+ E +  +E++   E+ ++   R   L  ++E  LEE I + R   +
Sbjct: 475 ERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERRE-DLEELIAERRETIE 533

Query: 166 LHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA 225
              +R   L    A L++E E   +  A  E++  + R+E A LN K A L+ER++ L  
Sbjct: 534 EKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL-- 591

Query: 226 DKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS 285
                        E I  L   I     ++  L E R  L + N + +E ++  R +   
Sbjct: 592 -------------ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRE 638

Query: 286 DESK----KLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 335
            E++    +++ A  +++     +E     +D+L  E  +L  ++  +  +L+ 
Sbjct: 639 LEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE 692

Length = 880

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 70/323 (21%), Positives = 110/323 (34%), Gaps = 41/323 (12%)

Query: 52  DIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERES-------H 104
           D+Q + V  D   +       L +AE             EE +     E E         
Sbjct: 589 DLQRLDVP-DYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEA 647

Query: 105 IQKEATLEGTVQQLQNECDLYK-EKVATLEETIQQLQRQ-NDLRMQKEATLEETIKQLRN 162
                     +Q+LQNE    K +    + E  QQ + Q   L  Q +  LE+    L  
Sbjct: 648 RTALKQARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEA 707

Query: 163 QNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL 222
             D    RE   E            W   E  L+ +++QL   SAA+   R   + RLK 
Sbjct: 708 LKDDF--RELRTER--------LAKWQVVEGELDNQLAQL---SAAIEAARTQAKARLKE 754

Query: 223 LEADKDSWTQMESVSKETIAGLSVDITQL----------RMQVVELEE-------SRNNL 265
           L+   D       V   T+  L   I +L          R +V E           R++L
Sbjct: 755 LKKQYDRELASLDVDPNTVKELKRQIEELETTIERIAVRRPEVREYRAFMQETWLHRDSL 814

Query: 266 LQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEK 325
            +E   L   +  L S    +  ++L     + K    ++E     ++K + +  EL+  
Sbjct: 815 REERPNLAIQLRELESSA-EELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELLRG 873

Query: 326 VNDLSVKLDRQSVAAGLSSAIGS 348
           + D   +L      A  + A GS
Sbjct: 874 LRDEMRQLAELKEPANANQAEGS 896

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 40/214 (18%), Positives = 88/214 (41%)

Query: 71  ANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVA 130
            ++AE ER+     E +A LE  +  L  E E   ++         +L  E    KE++ 
Sbjct: 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELE 367

Query: 131 TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 190
            L   ++++ ++      +     E +++L+ + +   +    L+  +  L  E      
Sbjct: 368 DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA 427

Query: 191 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQ 250
             A +E KI++L +E     ++    E +L+ L AD   + Q     KE    +  ++++
Sbjct: 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487

Query: 251 LRMQVVELEESRNNLLQENRQLKENVSSLRSQLS 284
           L+ ++ E E       +  R  +     L++ + 
Sbjct: 488 LQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 44/248 (17%), Positives = 90/248 (36%), Gaps = 23/248 (9%)

Query: 130 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL 189
             ++E  QQL+R    R + E       ++   +    ++ +  LE     ++ +     
Sbjct: 191 LIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLE 250

Query: 190 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVS-KETIAGLSVDI 248
           ++   L ++IS+L      +      L +++K L  +       E +  KE I  L  +I
Sbjct: 251 EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE-------EQLRVKEKIGELEAEI 303

Query: 249 TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAA 308
             L   + E E    +  +   +L+  +  L +++               ++   +IE  
Sbjct: 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI---------------EELEREIEEE 348

Query: 309 GALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIGSDAVTALTSDTEPMSESSDNM 368
               DKL  E  EL E++ DL  +L+        +     D    L      ++E    +
Sbjct: 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408

Query: 369 SSLNNRLE 376
             L   L+
Sbjct: 409 DRLQEELQ 416

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 46/227 (20%), Positives = 104/227 (45%), Gaps = 2/227 (0%)

Query: 110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ 169
            LE   + ++ +    +E++  L E I +L+++ +   Q    L + IK L  +  L ++
Sbjct: 234 ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVK 293

Query: 170 RE-GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKD 228
            + G LE  IA+L+       ++    E+++++L  E   L  +   LE  ++     +D
Sbjct: 294 EKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD 353

Query: 229 SWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 288
             T+  +  KE +  L  ++ ++  +  E  +   +  ++  +LK  ++ L+ +L     
Sbjct: 354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR-LQ 412

Query: 289 KKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR 335
           ++LQ  + E  D +  I    A I++L  E  +   ++     KL++
Sbjct: 413 EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 64/308 (20%), Positives = 119/308 (38%), Gaps = 32/308 (10%)

Query: 39  QKDDVRSQASEPADIQNVQVDADRHQSNG----AESANLAEAERQHLLQREAMAILEETV 94
           Q +     A E A ++N   +A R   +              ER+ L ++     +E   
Sbjct: 221 QSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKE--IEAAR 278

Query: 95  KHLRNERESHIQKEATL-------EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRM 147
           K  R +          L       + T  QLQ E +  ++   T EE  ++ +   +  +
Sbjct: 279 KANRAQLRELAADPLPLLLIPNLLDSTKAQLQKE-EQSQQNQLTQEELEERDKELLE-SL 336

Query: 148 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA 207
            K A   E +K++  +    I +    +  I +  S  E   Q E  ++Q   +L+D  +
Sbjct: 337 PKLALPAEHVKEIAAEL-AEIDKPATTDSEIPHRLSGSEL-TQLEVLIQQVKRELQDAKS 394

Query: 208 ALNMKRASLEERLKLLEADKDSWTQMESV-SKETIAGLSVDITQLRMQVVELEESRNNLL 266
            L  +   LEE L  ++       ++ ++ S+E IA L  ++ + + ++   E     LL
Sbjct: 395 QLLKELRELEEELAEVD------KKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELL 448

Query: 267 QENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIE--LVE 324
           ++   LKE + +LR  L     +K+     E+      I  A     K + E  E  L  
Sbjct: 449 RQLETLKEAIEALRKTLDEKTKQKINAFELER-----AITIA-DKAKKTLKEFREKLLER 502

Query: 325 KVNDLSVK 332
           K+  L  +
Sbjct: 503 KLQQLEEE 510

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 41.7 bits (99), Expect = 7e-04
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 28/164 (17%)

Query: 73  LAEAERQ-HLLQREAMAILEETVKHLRNE-------RESHIQK-EATLEGTVQQLQNECD 123
           L EA+++   +++EA+   +E +  LRNE       R + +QK E  L    + L  + +
Sbjct: 44  LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLE 103

Query: 124 LYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS 183
           L +++   LE+  ++L+++     +KE  LEE I++   +          LE  I+ L +
Sbjct: 104 LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE----------LE-RISGLTA 152

Query: 184 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADK 227
           E+     KE  LE+   + R E+A L +K    EE  K  EADK
Sbjct: 153 EE----AKEILLEKVEEEARHEAAVL-IKEI--EEEAK-EEADK 188

Length = 520

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 49/274 (17%), Positives = 104/274 (37%), Gaps = 30/274 (10%)

Query: 51  ADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEAT 110
            ++  ++++    + +  +       E + L + E   + EE ++ L  E     + E  
Sbjct: 476 LELYELELEELEEELSREKEEAELREEIEELEK-ELRELEEELIELLELEEALKEELEEK 534

Query: 111 LEGTVQQLQNECDLY--------KEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN 162
           LE     L+   +L         KE++  LE+ +Q+L+   +         EE +++LR 
Sbjct: 535 LEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEE-LEELRE 593

Query: 163 QNDLHIQREGGLEMNIANLQSEKEF--WLQKEAALEQKISQLRDESAALNM--------- 211
           +     ++   LE  ++ L+   +     + E  LE+   +L  E   LN+         
Sbjct: 594 RLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQ 653

Query: 212 --------KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRN 263
                   K   LE  ++      ++  Q+E   +E +  L  ++ QLR ++ EL +   
Sbjct: 654 AALEELEEKVEELEAEIRRELQRIENEEQLEEKLEE-LEQLEEELEQLREELEELLKKLG 712

Query: 264 NLLQENRQLKENVSSLRSQLSSDESKKLQHATSE 297
            + Q   +L+   + L       E  +      E
Sbjct: 713 EIEQLIEELESRKAELEELKKELEKLEKALELLE 746

Length = 908

>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 62/301 (20%), Positives = 122/301 (40%), Gaps = 40/301 (13%)

Query: 51  ADIQNVQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEAT 110
            D+ NV     + +   +  + +   E +   Q E    L + + HLRNE E   +   +
Sbjct: 189 GDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLES 248

Query: 111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR 170
           LE   +      DL++E+        +QL+RQ     + EA  +    QLR         
Sbjct: 249 LEKKFRSEGG--DLFEER--------EQLERQ---LKEIEAARKANRAQLREL----AAD 291

Query: 171 EGGLEMNIANLQSEKEFWLQKEAALEQKISQ-------------LRDESA---ALNMKRA 214
              L +    L S K    ++E + + +++Q             L   +     +    A
Sbjct: 292 PLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEERDKELLESLPKLALPAEHVKEIAA 351

Query: 215 SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 274
            L E  K    D +       +S   +  L V I Q++    EL+++++ LL+E R+L+E
Sbjct: 352 ELAEIDKPATTDSEI---PHRLSGSELTQLEVLIQQVKR---ELQDAKSQLLKELRELEE 405

Query: 275 NVSSLRSQLSS-DESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333
            ++ +  ++S+    +++     E  +   ++  + A I++L+ +   L E +  L   L
Sbjct: 406 ELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465

Query: 334 D 334
           D
Sbjct: 466 D 466

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria [DNA metabolism, Restriction/modification]. Length = 650

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 53/241 (21%), Positives = 99/241 (41%), Gaps = 23/241 (9%)

Query: 75  EAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEE 134
           E  ++ L  + A   LE     L    E  + +   LE  ++ L+      + + A  EE
Sbjct: 76  ELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENEAAEAEE 135

Query: 135 TIQQLQRQND---LRMQKEATLE-----ETIKQLRNQNDLHIQREGGLEMNIANLQSEK- 185
             + L+ + D   L++Q E   +     E+I +++N       R    +  +  L+SE  
Sbjct: 136 EAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCRAQNADTELKLLESELE 195

Query: 186 ------EFWLQKEAALEQKISQLR---DESAALNMKRASLEERLKLLEADKDSWTQMESV 236
                 E   ++ A  E+K+  L      SA  ++K   LEE LK  E D     ++   
Sbjct: 196 ELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEELKRYEQDA----EVVKS 251

Query: 237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATS 296
            KE +  +  ++ +    + E      ++ ++N  LKE +  L+S+L   E  + + A  
Sbjct: 252 MKEQLLQIP-ELERELAALREENRKLRSMKEDNELLKEELEDLQSRLERFEKMREKLADL 310

Query: 297 E 297
           E
Sbjct: 311 E 311

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 47/236 (19%), Positives = 91/236 (38%), Gaps = 9/236 (3%)

Query: 40  KDDVRSQASEPADIQNVQVDAD-RHQSNGAESANLAEAERQHLLQREAMAILEETVKHLR 98
              ++S   E   +Q  Q   D R  +       LA A++Q  LQ+    +       + 
Sbjct: 392 TQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAA---AIT 448

Query: 99  NERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK 158
              +    ++  L+ + Q L+      ++++ T E+   Q  R+  + + +   L+E   
Sbjct: 449 CTAQCEKLEKIHLQESAQSLKER----EQQLQTKEQIHLQETRKKAVVLARLLELQEEPC 504

Query: 159 QLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEE 218
            L     +H         N   L    +   Q  A LE     +  +  +   +RASL+E
Sbjct: 505 PLCGS-CIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKE 563

Query: 219 RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKE 274
           +++ ++      TQ ++ SKE I  L     +L+    +L E+ + L  E   L  
Sbjct: 564 QMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLR 619

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|215915 pfam00429, TLV_coat, ENV polyprotein (coat polyprotein)

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 23/116 (19%)

Query: 116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLE 175
             LQ+        +  LE +I  L+           +L E + Q R   DL    +GGL 
Sbjct: 426 TSLQHALI---SDIQALESSINDLEDSLT-------SLAEVVLQNRRGLDLLFLEQGGL- 474

Query: 176 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT 231
              A LQ E  F+      +   I++L++           L +R +LL  ++  + 
Sbjct: 475 --CAALQEECCFYADHSGIVRDSIAKLQER----------LPQRQRLLTDNQLWFE 518

Length = 560

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 131 TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ 190
           +  E + +LQ++     ++ A L+E + +L+ +N    Q    LE  +  LQ E    L 
Sbjct: 63  SARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKE----LA 118

Query: 191 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS 229
           +   L     +L +E+  L  + A L++  + LEA+ + 
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENEALEAENER 157

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 43/213 (20%), Positives = 90/213 (42%), Gaps = 29/213 (13%)

Query: 127 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE 186
             V+ +   I+QL+       +K   LEE  K+ ++ ++         E N    Q    
Sbjct: 164 GDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSA-----ERNALLAQ---- 214

Query: 187 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSV 246
                 A  +Q+I +L  +   L  K+   +  L+  +  +    +M+   K+ +  +++
Sbjct: 215 -----RAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTI 269

Query: 247 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIE 306
                  Q  + E  R +L  EN QL E++ +L+ +L S +    Q A    ++ ++   
Sbjct: 270 -------QRRDEETERIDLQLENEQLHEDLRTLQERLESSQ----QKAGLLGEELAS--- 315

Query: 307 AAGALIDKLITENIELVEKVNDLSVKLDRQSVA 339
             G+L D  I E  +   +   +S++L + ++A
Sbjct: 316 -LGSLRDHTIAELHQSRLESAQMSLQLSQLNLA 347

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	475
KOG0964	1200	consensus Structural maintenance of chromosome pro	99.76
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.89
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.8
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.78
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.77
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.73
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.7
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.68
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.44
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.43
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.39
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.32
PRK02224	880	chromosome segregation protein; Provisional	98.31
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.26
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.26
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.22
PRK02224	880	chromosome segregation protein; Provisional	98.21
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.21
PHA02562	562	46 endonuclease subunit; Provisional	98.18
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.15
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.14
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.1
PHA02562	562	46 endonuclease subunit; Provisional	98.08
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	98.04
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	98.02
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	98.01
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.0
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.99
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	97.98
PRK11637	428	AmiB activator; Provisional	97.97
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	97.96
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.94
PRK11637	428	AmiB activator; Provisional	97.92
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.88
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.87
PRK03918	880	chromosome segregation protein; Provisional	97.86
PRK03918	880	chromosome segregation protein; Provisional	97.83
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.81
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.76
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.76
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.76
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.7
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.67
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.65
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	97.63
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.6
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.59
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	97.55
PRK04863	1486	mukB cell division protein MukB; Provisional	97.51
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.5
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.48
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	97.47
KOG0933	1174	consensus Structural maintenance of chromosome pro	97.43
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	97.42
PRK09039	343	hypothetical protein; Validated	97.41
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.41
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	97.4
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.38
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.38
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.36
PRK01156	895	chromosome segregation protein; Provisional	97.35
COG4372	499	Uncharacterized protein conserved in bacteria with	97.35
PRK01156	895	chromosome segregation protein; Provisional	97.3
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.3
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.29
PRK04863	1486	mukB cell division protein MukB; Provisional	97.27
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.25
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.24
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	97.24
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	97.23
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.16
KOG0996	1293	consensus Structural maintenance of chromosome pro	97.15
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.14
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.14
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.14
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	97.09
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.05
COG5185	622	HEC1 Protein involved in chromosome segregation, i	97.05
PRK04778	569	septation ring formation regulator EzrA; Provision	97.02
KOG0971	1243	consensus Microtubule-associated protein dynactin	97.0
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	97.0
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.99
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.99
PRK11281	1113	hypothetical protein; Provisional	96.99
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	96.98
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.97
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.9
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.88
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	96.85
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	96.85
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.83
PRK10929	1109	putative mechanosensitive channel protein; Provisi	96.82
COG4942	420	Membrane-bound metallopeptidase [Cell division and	96.8
PRK09039	343	hypothetical protein; Validated	96.79
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	96.79
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	96.79
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	96.73
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	96.73
PRK04778	569	septation ring formation regulator EzrA; Provision	96.68
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.6
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	96.55
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.49
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.48
KOG0963	629	consensus Transcription factor/CCAAT displacement	96.48
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.44
PRK10929	1109	putative mechanosensitive channel protein; Provisi	96.39
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	96.38
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	96.37
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	96.34
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	96.31
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	96.31
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.3
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	96.3
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.24
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	96.18
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.15
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	96.15
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	96.08
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	96.07
KOG0018	1141	consensus Structural maintenance of chromosome pro	96.03
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.98
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	95.94
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.94
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	95.93
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.89
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.87
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	95.87
COG4372	499	Uncharacterized protein conserved in bacteria with	95.86
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	95.84
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	95.83
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.83
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	95.82
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.8
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	95.76
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.75
PRK11281	1113	hypothetical protein; Provisional	95.72
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	95.71
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.7
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	95.66
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.65
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	95.48
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	95.42
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	95.4
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	95.37
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	95.34
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.32
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	95.3
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	95.3
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	95.14
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.11
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.99
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	94.99
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	94.94
PLN02939	977	transferase, transferring glycosyl groups	94.7
PF15294	278	Leu_zip: Leucine zipper	94.64
KOG1850	391	consensus Myosin-like coiled-coil protein [Cytoske	94.61
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	94.59
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	94.58
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	94.57
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	94.48
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.47
KOG0979	1072	consensus Structural maintenance of chromosome pro	94.35
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	94.35
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	94.25
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	94.04
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.01
PF12795	240	MscS_porin: Mechanosensitive ion channel porin dom	94.01
PF15397	258	DUF4618: Domain of unknown function (DUF4618)	93.93
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.89
KOG4302	660	consensus Microtubule-associated protein essential	93.8
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	93.66
KOG1103	561	consensus Predicted coiled-coil protein [Function	93.63
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	93.47
KOG0979	1072	consensus Structural maintenance of chromosome pro	93.46
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	93.44
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	93.39
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	93.28
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	93.22
KOG1003	205	consensus Actin filament-coating protein tropomyos	93.19
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	93.19
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	93.18
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	93.13
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	93.05
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.85
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	92.82
PLN03188	1320	kinesin-12 family protein; Provisional	92.66
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	92.56
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.52
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	92.44
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	92.35
KOG0249	916	consensus LAR-interacting protein and related prot	92.3
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	92.23
PRK15422	79	septal ring assembly protein ZapB; Provisional	92.1
COG5185	622	HEC1 Protein involved in chromosome segregation, i	92.08
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	91.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	91.93
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	91.93
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	91.82
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	91.79
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	91.72
KOG1003	205	consensus Actin filament-coating protein tropomyos	91.64
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	91.47
KOG0249	916	consensus LAR-interacting protein and related prot	91.47
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	91.24
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	91.24
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	91.09
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	91.04
PF06818	202	Fez1: Fez1; InterPro: IPR009638 This family repres	90.79
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	90.55
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.35
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	90.2
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	89.9
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.85
PRK10884	206	SH3 domain-containing protein; Provisional	89.81
PF03148	384	Tektin: Tektin family; InterPro: IPR000435 Tektin	89.62
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	89.59
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	89.55
KOG2991	330	consensus Splicing regulator [RNA processing and m	89.53
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	89.39
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	89.0
KOG3091	508	consensus Nuclear pore complex, p54 component (sc	88.98
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	88.95
PRK10361	475	DNA recombination protein RmuC; Provisional	88.87
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	88.79
PF10186	302	Atg14: UV radiation resistance protein and autopha	88.63
KOG4807	593	consensus F-actin binding protein, regulates actin	88.44
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	88.34
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	88.31
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	88.26
PRK10698	222	phage shock protein PspA; Provisional	88.24
KOG4302	660	consensus Microtubule-associated protein essential	88.11
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	87.9
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	87.87
PRK15422	79	septal ring assembly protein ZapB; Provisional	87.87
PRK10698	222	phage shock protein PspA; Provisional	87.73
COG5293	591	Predicted ATPase [General function prediction only	87.67
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	87.61
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	87.46
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.28
KOG0288	459	consensus WD40 repeat protein TipD [General functi	86.96
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	86.7
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	86.53
PRK10246	1047	exonuclease subunit SbcC; Provisional	86.45
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	86.11
KOG2751	447	consensus Beclin-like protein [Signal transduction	85.74
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	85.71
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	85.37
PF15450	531	DUF4631: Domain of unknown function (DUF4631)	85.32
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	85.23
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	85.07
COG2433	652	Uncharacterized conserved protein [Function unknow	84.97
PRK03947	140	prefoldin subunit alpha; Reviewed	84.9
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	84.48
KOG4677	554	consensus Golgi integral membrane protein [Intrace	84.19
COG2433	652	Uncharacterized conserved protein [Function unknow	84.12
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	83.99
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	83.97
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	83.84
PRK03947	140	prefoldin subunit alpha; Reviewed	83.61
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	83.6
PF15254	861	CCDC14: Coiled-coil domain-containing protein 14	83.34
PLN02939	977	transferase, transferring glycosyl groups	83.07
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	82.98
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	82.63
KOG4603	201	consensus TBP-1 interacting protein [Signal transd	82.44
KOG0239	670	consensus Kinesin (KAR3 subfamily) [Cytoskeleton]	82.32
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	82.29
PF13166	712	AAA_13: AAA domain	82.24
PF13514	1111	AAA_27: AAA domain	82.19
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	81.89
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	81.58
PRK11519	719	tyrosine kinase; Provisional	81.01
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	80.51

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=3.4e-16  Score=173.65  Aligned_cols=318  Identities=19%  Similarity=0.232  Sum_probs=229.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHH
Q 011909          111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ  190 (475)
Q Consensus       111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~q  190 (475)
                      -+..+.++..++.+++.++..|..++.|++.+....+++++.+|++|++|++.+..+.|.+......+..|.+.|.....
T Consensus       263 ~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~  342 (1200)
T KOG0964|consen  263 VEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKD  342 (1200)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            34578889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------------HHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHH
Q 011909          191 KEAALEQKISQLRDESAALNMKRASLEERLKLL------------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVE  257 (475)
Q Consensus       191 Ela~L~peiekL~~Ee~~LkqkLasLEeKl~~L------------kaERD~WLkkEI-sLke~ISsl~~EiksLqeEVke  257 (475)
                      +|+.|+|+|..|.+++..++.+++.++.+++.|            +.|||.|++.|| .++.-|.........|++++..
T Consensus       343 EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~  422 (1200)
T KOG0964|consen  343 ELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIED  422 (1200)
T ss_pred             HHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999988            899999999999 9999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909          258 LEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS  337 (475)
Q Consensus       258 LEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~  337 (475)
                      ++.......++|..+-..+.+...++..+..+.+    +.++++...+++=..+--...+-..-+..-..+|...-+...
T Consensus       423 ~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~----~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~  498 (1200)
T KOG0964|consen  423 LESELKEKLEEIKELESSINETKGRMEEFDAENT----ELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLR  498 (1200)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998888766665    445555444443333222222222222222233333333344


Q ss_pred             hhhcccccccccccccc------ccCCCCCCCCccccccccccccccccccccccCCCc---cCCCCCCCc-cccCCccc
Q 011909          338 VAAGLSSAIGSDAVTAL------TSDTEPMSESSDNMSSLNNRLETQGVVAVKEDRNGI---NGVHADPPP-LVLSSSEA  407 (475)
Q Consensus       338 ~~~~~ss~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~  407 (475)
                      ++-+-+-++|-+.+..|      .|+++|+.+--   .+.+.---..++    +-+|+-   |--+++-+. ++.-|-.-
T Consensus       499 ~~~~r~v~nGi~~v~~I~e~~k~ngv~G~v~eL~---~v~~~f~tavEv----taGNsLF~iVVdndevATkIl~~~n~m  571 (1200)
T KOG0964|consen  499 ATMNRSVANGIDSVRKIKEELKPNGVFGTVYELI---KVPNKFKTAVEV----TAGNSLFNIVVDNDEVATKILRKLNKM  571 (1200)
T ss_pred             HhccchhhhhhHHHHHHHHHhcccccceehhhhh---cCCHHHHhHHhh----hcccceEEEEecccHHHHHHHHHHHhc
Confidence            44444444554443333      23344433211   111111111111    223332   111222111 12233333


Q ss_pred             ccCCceeeccCCCccchhhhhhccccccccccCccCCCC
Q 011909          408 EYSGEIVQIPLDDKEVQDLELQVVESYTDKVAAVPLTDA  446 (475)
Q Consensus       408 ~~~~eiv~~~ld~~~~~~~~~q~~~~~~d~~~~vp~~da  446 (475)
                      . .|+|--+||+-.-.++.+      |.+.+++.|+++-
T Consensus       572 ~-~GrVTF~PLNrl~~r~v~------yp~~sdaiPli~k  603 (1200)
T KOG0964|consen  572 K-GGRVTFMPLNRLKARDVE------YPKDSDAIPLISK  603 (1200)
T ss_pred             c-CCeeEEeecccCchhhcc------CCCCCCccchHHH
Confidence            3 489999999988776544      3456778888764

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.89  E-value=7.3e-06  Score=93.81  Aligned_cols=12  Identities=25%  Similarity=0.567  Sum_probs=9.2

Q ss_pred             CCceeeccCCCc
Q 011909          410 SGEIVQIPLDDK  421 (475)
Q Consensus       410 ~~eiv~~~ld~~  421 (475)
                      .|.+--||||.+
T Consensus       572 ~gr~tflpl~~~  583 (1164)
T TIGR02169       572 AGRATFLPLNKM  583 (1164)
T ss_pred             CCCeeeccHhhc
Confidence            678888999744

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.80  E-value=1.2e-05  Score=91.50  Aligned_cols=13  Identities=31%  Similarity=0.618  Sum_probs=9.1

Q ss_pred             CCceeeccCCCcc
Q 011909          410 SGEIVQIPLDDKE  422 (475)
Q Consensus       410 ~~eiv~~~ld~~~  422 (475)
                      .|-+.+||||...
T Consensus       570 ~g~~~~l~l~~i~  582 (1179)
T TIGR02168       570 LGRVTFLPLDSIK  582 (1179)
T ss_pred             CCcEEEeeccccc
Confidence            5667778887654

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.78  E-value=1.5e-05  Score=91.23  Aligned_cols=47  Identities=21%  Similarity=0.167  Sum_probs=17.1

Q ss_pred             HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909          153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKI  199 (475)
Q Consensus       153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~pei  199 (475)
                      ++..+..++.......+....+..++..++.++.....++..+..++
T Consensus       306 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~  352 (1164)
T TIGR02169       306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR  352 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.77  E-value=2.6e-05  Score=88.91  Aligned_cols=44  Identities=27%  Similarity=0.407  Sum_probs=17.8

Q ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909          173 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  216 (475)
Q Consensus       173 ~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL  216 (475)
                      .+..++..++.++.....++..+.+++..+......+...+..+
T Consensus       320 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~  363 (1179)
T TIGR02168       320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL  363 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444444444444444444444444443433333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.73  E-value=0.00022  Score=77.90  Aligned_cols=37  Identities=24%  Similarity=0.388  Sum_probs=27.7

Q ss_pred             chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909          301 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS  337 (475)
Q Consensus       301 Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~  337 (475)
                      |.+.+..+...=++|+.++|.|.+.+..|..+|+.-.
T Consensus       422 lks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~~  458 (546)
T PF07888_consen  422 LKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKVA  458 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4444444555667789999999999999998887653

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.70  E-value=6.9e-05  Score=88.19  Aligned_cols=228  Identities=21%  Similarity=0.305  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909          109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW  188 (475)
Q Consensus       109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~  188 (475)
                      .-++..+..+...+..+......+...+..+..+...+......+..++..+.............+..++..++..+..+
T Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~  770 (1163)
T COG1196         691 KSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL  770 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444443333333333444444443333333333333333444444444444


Q ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHH
Q 011909          189 LQKEAALEQKISQLR-------DESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES  261 (475)
Q Consensus       189 ~qEla~L~peiekL~-------~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEes  261 (475)
                      ......+...+..+.       .....+..++..+..++..|..++..|...-..+...|..+..++..+..++..+...
T Consensus       771 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~  850 (1163)
T COG1196         771 EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEE  850 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444444444333       4444444455555555555566666665555555556666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909          262 RNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS  337 (475)
Q Consensus       262 r~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~  337 (475)
                      ...+...+..++.++..++..+..+.......+ .+-..|..++..+...+.++..+.+.+....+.|..++....
T Consensus       851 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  925 (1163)
T COG1196         851 LEELEKELEELKEELEELEAEKEELEDELKELE-EEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLE  925 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666555555554443332 455677778888888888888888888887777766554444

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.68  E-value=1.2e-05  Score=94.33  Aligned_cols=189  Identities=19%  Similarity=0.235  Sum_probs=78.1

Q ss_pred             HHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----
Q 011909          149 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-----  223 (475)
Q Consensus       149 kkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L-----  223 (475)
                      ..+.++..|..++........+...+..++..++..+.....++......+..+......+......++..+..+     
T Consensus       296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~  375 (1163)
T COG1196         296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELE  375 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            344445555555555554444445555555555555555555555443334444444444444444444444412     


Q ss_pred             -----HHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Q 011909          224 -----EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSE  297 (475)
Q Consensus       224 -----kaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eE  297 (475)
                           ..++..|+..++ .....+..++.++..+...+..+......+..++..+..++..++.++..+..++.-+ .+.
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~  454 (1163)
T COG1196         376 ELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEEL-EEQ  454 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHH
Confidence                 111222222222 2333333333333333333333333333333333333333333222222222222111 123


Q ss_pred             hhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909          298 QKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSV  338 (475)
Q Consensus       298 n~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~  338 (475)
                      .+.+...+..+...+..+....+.+..+++++...++-...
T Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~  495 (1163)
T COG1196         455 LEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEA  495 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555555555555666666666555544333

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.44  E-value=0.0012  Score=66.23  Aligned_cols=218  Identities=21%  Similarity=0.297  Sum_probs=146.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh
Q 011909          108 EATLEGTVQQLQNECDLYKEK-------VATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN  180 (475)
Q Consensus       108 e~~l~e~IkqLq~El~~lk~k-------l~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q  180 (475)
                      ..+++..|.+|+..|+.+..+       +..+...+..++..+.........++..|..|+...+.....+..++.+|..
T Consensus        49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~  128 (312)
T PF00038_consen   49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQS  128 (312)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHH
Confidence            556788888888887766544       4445555556666666678888899999999999999999999999999999


Q ss_pred             HHHHHHHHH----HHHHHHHHHHH-HHHHH-----HHHHHHHHHhH----HHHHHHHHHhhhhhhhhhh-chHHHHhhhH
Q 011909          181 LQSEKEFWL----QKEAALEQKIS-QLRDE-----SAALNMKRASL----EERLKLLEADKDSWTQMES-VSKETIAGLS  245 (475)
Q Consensus       181 Lq~EI~~~~----qEla~L~peie-kL~~E-----e~~LkqkLasL----EeKl~~LkaERD~WLkkEI-sLke~ISsl~  245 (475)
                      |+.+++...    +++..|..++. ...-+     ...|...+..+    +......+.+=+.|.+..+ .+........
T Consensus       129 L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~  208 (312)
T PF00038_consen  129 LKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSS  208 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccc
Confidence            999887643    35555555552 11111     12223333332    3333333777788888888 8888888888


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHH
Q 011909          246 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEK  325 (475)
Q Consensus       246 ~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe  325 (475)
                      ..+..++.++..+......+..++..|+.+...+..++..++....    .+.+.+...+..+-..+..+..+-++...+
T Consensus       209 ~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~----~~~~~~~~~i~~le~el~~l~~~~~~~~~e  284 (312)
T PF00038_consen  209 EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD----EEREEYQAEIAELEEELAELREEMARQLRE  284 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH----HHHHHHHHhhhccchhHHHHHHHHHHHHHH
Confidence            8888888888888888888888888888887777777777665554    344555555555555555555555554444


Q ss_pred             HHHH
Q 011909          326 VNDL  329 (475)
Q Consensus       326 ~neL  329 (475)
                      .++|
T Consensus       285 y~~L  288 (312)
T PF00038_consen  285 YQEL  288 (312)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.43  E-value=0.00028  Score=78.44  Aligned_cols=170  Identities=24%  Similarity=0.316  Sum_probs=131.9

Q ss_pred             HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH--
Q 011909           90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH--  167 (475)
Q Consensus        90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~--  167 (475)
                      +-|+|++|+-|.|-.          ..+|+.+...+.+++..+...+..|..+....+..+..+|-.|.+|+.....-  
T Consensus         2 l~e~l~qlq~Erd~y----------a~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~   71 (617)
T PF15070_consen    2 LMESLKQLQAERDQY----------AQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPP   71 (617)
T ss_pred             hHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence            458899999988753          34566666667777777777778888888888888888999999988765532  


Q ss_pred             -------HHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhhhhhhhhhh-c
Q 011909          168 -------IQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---EADKDSWTQMES-V  236 (475)
Q Consensus       168 -------~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L---kaERD~WLkkEI-s  236 (475)
                             .+.+..|.+++.+|+.+++.+..++.......+.|...+...+.+|..+|..++.+   ..++.. |...+ +
T Consensus        72 ~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~k-LLe~lqs  150 (617)
T PF15070_consen   72 PEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQK-LLEQLQS  150 (617)
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcc
Confidence                   23445678888899999999888887777777888777788888999999999888   456666 44567 7


Q ss_pred             hHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011909          237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENR  270 (475)
Q Consensus       237 Lke~ISsl~~EiksLqeEVkeLEesr~eL~kEIq  270 (475)
                      =+..|++--..+..|+.++.+|+...-.+..+..
T Consensus       151 dk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~  184 (617)
T PF15070_consen  151 DKATASRALSQNRELKEQLAELQDAFVKLTNENM  184 (617)
T ss_pred             cchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence            7888899899999999999999886666665553

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.39  E-value=0.00081  Score=73.63  Aligned_cols=66  Identities=26%  Similarity=0.395  Sum_probs=31.8

Q ss_pred             cchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011909           99 NERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN  164 (475)
Q Consensus        99 ~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~  164 (475)
                      .|+.-..+.-..|++.+..|+.++..++..+.....+-.+|.............+......|....
T Consensus       150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~  215 (546)
T PF07888_consen  150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL  215 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444455555555555555555555555555555555444444444444444444443333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.32  E-value=0.0005  Score=67.52  Aligned_cols=221  Identities=14%  Similarity=0.171  Sum_probs=114.2

Q ss_pred             HhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhh
Q 011909           95 KHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL  174 (475)
Q Consensus        95 ~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~L  174 (475)
                      ..|+++.|--..+...++..++........+..++..|.-.+..|+.+++..-........++..++...+.+......+
T Consensus         4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~l   83 (237)
T PF00261_consen    4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVL   83 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444455555555555555555555555555555555555555444444555555544444444444334


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHH
Q 011909          175 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRM  253 (475)
Q Consensus       175 ee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqe  253 (475)
                      +.........++.....+...................++..++..+.... +|-.-+-..| .|...|......+.+|..
T Consensus        84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aE-eR~e~~E~ki~eLE~el~~~~~~lk~lE~  162 (237)
T PF00261_consen   84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAE-ERAEAAESKIKELEEELKSVGNNLKSLEA  162 (237)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence            44434444444444444443433334444444444444444444443331 1222233455 666677777777777777


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHH
Q 011909          254 QVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVE  324 (475)
Q Consensus       254 EVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeE  324 (475)
                      ...........+...|..|..+|..+..+....+..+.        +|..+++.+...|.........+..
T Consensus       163 ~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~--------~Le~~id~le~eL~~~k~~~~~~~~  225 (237)
T PF00261_consen  163 SEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVK--------KLEKEIDRLEDELEKEKEKYKKVQE  225 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77766666777777777777777777666555444332        5555666666655555444444333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK02224 chromosome segregation protein; Provisional

Probab=98.31  E-value=0.0019  Score=73.50  Aligned_cols=84  Identities=19%  Similarity=0.240  Sum_probs=45.0

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHH
Q 011909          174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLR  252 (475)
Q Consensus       174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLq  252 (475)
                      +......|...+......+..+..++..+......+...+..++..+..|+.+.+. +.+++ .+...+......+..+.
T Consensus       312 l~~~~~~l~~k~~el~~~l~~~~~~l~~~~~~~e~~~~~~~~le~~~~~l~~~~~~-l~~~~~~~~~~l~~~~~~l~~l~  390 (880)
T PRK02224        312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAE-LESELEEAREAVEDRREEIEELE  390 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555555555555555555566666666666666554443 44444 55555555555555555


Q ss_pred             HHHHHh
Q 011909          253 MQVVEL  258 (475)
Q Consensus       253 eEVkeL  258 (475)
                      .++..+
T Consensus       391 ~el~el  396 (880)
T PRK02224        391 EEIEEL  396 (880)
T ss_pred             HHHHHH
Confidence            544444

>TIGR00606 rad50 rad50

Probab=98.26  E-value=0.00087  Score=79.97  Aligned_cols=161  Identities=13%  Similarity=0.117  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHhHHHHHHHHHhhhhHHHHHhhhhHHH
Q 011909          111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR-------------MQKEATLEETIKQLRNQNDLHIQREGGLEMN  177 (475)
Q Consensus       111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~-------------LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~  177 (475)
                      +++.+.++..++..++.++..+...+..+..+...+             .+....++-.|++|.........     ..+
T Consensus       749 l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~-----~~s  823 (1311)
T TIGR00606       749 LRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL-----DRT  823 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----cCC
Confidence            455555666666655555666666666666666444             44445555555555544443322     235


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhh--hh-chHHHHhhhHHHHHHHHHH
Q 011909          178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM--ES-VSKETIAGLSVDITQLRMQ  254 (475)
Q Consensus       178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkk--EI-sLke~ISsl~~EiksLqeE  254 (475)
                      +..|+.++.....++..+..++..+..+...+..++..|+.++..+...+...-..  .- .++..|..+..++..+...
T Consensus       824 ~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~  903 (1311)
T TIGR00606       824 VQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIRE  903 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67778888888888888877777777777777777777777776663333332110  11 4444444444444444444


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHH
Q 011909          255 VVELEESRNNLLQENRQLKENV  276 (475)
Q Consensus       255 VkeLEesr~eL~kEIqqLReqL  276 (475)
                      +.+++.....+..++..+...+
T Consensus       904 ~~~~~~~~~~~~~~~~~~~~~~  925 (1311)
T TIGR00606       904 IKDAKEQDSPLETFLEKDQQEK  925 (1311)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHH
Confidence            4444444444444444444433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.26  E-value=0.0024  Score=78.35  Aligned_cols=98  Identities=30%  Similarity=0.367  Sum_probs=40.6

Q ss_pred             HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011909           90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ  169 (475)
Q Consensus        90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Q  169 (475)
                      +|.-++.+..+.+-.=.+...++..-+.++.++..++..+.-++.++..++.+...+-.++-.+++.|..+++.++....
T Consensus       906 le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~k  985 (1930)
T KOG0161|consen  906 LEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSK  985 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444443333444444444444444444444444444444444444444444444444444444443333333


Q ss_pred             HhhhhHHHHHhHHHHHHH
Q 011909          170 REGGLEMNIANLQSEKEF  187 (475)
Q Consensus       170 kea~Lee~I~qLq~EI~~  187 (475)
                      ....+++.+.+|.+.+..
T Consensus       986 ekk~lEe~~~~l~~~l~~ 1003 (1930)
T KOG0161|consen  986 EKKELEERIRELQDDLQA 1003 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333344444444443333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.22  E-value=0.00088  Score=73.35  Aligned_cols=82  Identities=21%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             hhhhHHHHHHHHH---HHHHHHHHHHHHHhhhcch-----hhhhHH----------HhhHHHHHHHHHHHHHHHHHHHHH
Q 011909           70 SANLAEAERQHLL---QREAMAILEETVKHLRNER-----ESHIQK----------EATLEGTVQQLQNECDLYKEKVAT  131 (475)
Q Consensus        70 ~~~~~~~~~~~~~---~~~~~~~~eeti~~l~~e~-----~~~~~~----------e~~l~e~IkqLq~El~~lk~kl~~  131 (475)
                      .-.+.+.||+.+-   -|=|  -.=|.+|.|+.+|     |+-+-+          -++++..|..+..-++....+.+.
T Consensus        33 ir~sR~rEK~El~~LNDRLA--~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~  110 (546)
T KOG0977|consen   33 IRDSREREKKELQELNDRLA--VYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAK  110 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHH
Confidence            3455666776543   3544  7778888888888     111111          244555555555556655555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhH
Q 011909          132 LEETIQQLQRQNDLRMQKEATL  153 (475)
Q Consensus       132 L~etikQLe~d~~~~LQkkA~l  153 (475)
                      ++..+..|..+.+.+.++....
T Consensus       111 ~e~ei~kl~~e~~elr~~~~~~  132 (546)
T KOG0977|consen  111 LEIEITKLREELKELRKKLEKA  132 (546)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHH
Confidence            5556666655555555555555

>PRK02224 chromosome segregation protein; Provisional

Probab=98.21  E-value=0.0015  Score=74.35  Aligned_cols=44  Identities=20%  Similarity=0.176  Sum_probs=24.2

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL  279 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel  279 (475)
                      .+...|..+...+..|+..+..++..+..+..++..++.++..+
T Consensus       596 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        596 TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL  639 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555555555555555555555544

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.21  E-value=0.0038  Score=76.66  Aligned_cols=81  Identities=23%  Similarity=0.253  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHH
Q 011909          112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK  191 (475)
Q Consensus       112 ~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qE  191 (475)
                      +..+.+++.+.....+++..|..++..+++....+.+.+..+|..+++|.+.......+-..+.....+|...++.....
T Consensus       949 E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~ 1028 (1930)
T KOG0161|consen  949 ELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVT 1028 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444666666677788888888888888888888888888888888888888777777666666555555555554443


Q ss_pred             H
Q 011909          192 E  192 (475)
Q Consensus       192 l  192 (475)
                      +
T Consensus      1029 l 1029 (1930)
T KOG0161|consen 1029 L 1029 (1930)
T ss_pred             H
Confidence            3

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.18  E-value=0.0013  Score=70.70  Aligned_cols=168  Identities=12%  Similarity=0.211  Sum_probs=73.6

Q ss_pred             HHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhh----
Q 011909          156 TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT----  231 (475)
Q Consensus       156 kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WL----  231 (475)
                      .+.+|+............++.++..|+.++.........+...+..+...       +..++..+..++.+...|-    
T Consensus       214 ~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~-------~~~~~~~l~~~~~~~~~~~~~~~  286 (562)
T PHA02562        214 NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTA-------AAKIKSKIEQFQKVIKMYEKGGV  286 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcCCCC
Confidence            34455555444444444445555555555544443333333333333333       3333333444444443331    


Q ss_pred             ----hhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchH
Q 011909          232 ----QMES-VSKETIAGLSVDITQLRMQVVELEESRN---NLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFST  303 (475)
Q Consensus       232 ----kkEI-sLke~ISsl~~EiksLqeEVkeLEesr~---eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~  303 (475)
                          ...+ ++...+..+...+..|+.++..++..+.   ....+...+..++.+++..+..+...... ...+...|..
T Consensus       287 Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~-~~~~~~~l~~  365 (562)
T PHA02562        287 CPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLIT-LVDKAKKVKA  365 (562)
T ss_pred             CCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence                1222 2245555566666666666666666555   33333334444444444444443322211 1234445555


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          304 QIEAAGALIDKLITENIELVEKVNDLSV  331 (475)
Q Consensus       304 E~E~l~s~vekL~~enq~LeEe~neL~~  331 (475)
                      +++.|.+....+..+-++|.+++.++..
T Consensus       366 ei~~l~~~~~~~~~~l~~l~~~l~~~~~  393 (562)
T PHA02562        366 AIEELQAEFVDNAEELAKLQDELDKIVK  393 (562)
T ss_pred             HHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence            5555544444444444444444444433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.15  E-value=0.0067  Score=60.90  Aligned_cols=97  Identities=24%  Similarity=0.357  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909           86 AMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVA-------TLEETIQQLQRQNDLRMQKEATLEETIK  158 (475)
Q Consensus        86 ~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~-------~L~etikQLe~d~~~~LQkkA~lE~kIK  158 (475)
                      .|.+++.+|+.|+...|--...-+-++-.+..+..+++.++.+..       .+..++..|..+.+........++.+|.
T Consensus        48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~  127 (312)
T PF00038_consen   48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ  127 (312)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence            377899999999999988877778888888888888877765554       5556666677788888888888888888


Q ss_pred             HHHhhhhHHHHHhhhhHHHHHhHHHHH
Q 011909          159 QLRNQNDLHIQREGGLEMNIANLQSEK  185 (475)
Q Consensus       159 dLe~~~~s~~Qkea~Lee~I~qLq~EI  185 (475)
                      .|+.........   ++++|..|+..+
T Consensus       128 ~L~eEl~fl~~~---heeEi~~L~~~~  151 (312)
T PF00038_consen  128 SLKEELEFLKQN---HEEEIEELREQI  151 (312)
T ss_dssp             HHHHHHHHHHHH---HHHHHHTTSTT-
T ss_pred             HHHHHHHHHHhh---hhhhhhhhhhcc
Confidence            888877654333   566677766665

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>TIGR00606 rad50 rad50

Probab=98.14  E-value=0.0033  Score=75.17  Aligned_cols=38  Identities=8%  Similarity=0.100  Sum_probs=24.4

Q ss_pred             hhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909          297 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD  334 (475)
Q Consensus       297 En~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~  334 (475)
                      |-.+|..+...+.+.-..+.-+.++|++.+..|..+|+
T Consensus      1055 e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~ 1092 (1311)
T TIGR00606      1055 EHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELR 1092 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            55666666666666666666666666666666666663

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.10  E-value=0.0037  Score=71.34  Aligned_cols=116  Identities=20%  Similarity=0.319  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh
Q 011909          111 LEGTVQQLQNECDLYK----------EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN  180 (475)
Q Consensus       111 l~e~IkqLq~El~~lk----------~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q  180 (475)
                      |+-.+++|.+++..+.          .+++......+||+.=+...+++.|.++-.|.+-+.+-.........+...+.-
T Consensus       229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad  308 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD  308 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555777777777554          344445555678888888888888888888887777666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011909          181 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD  226 (475)
Q Consensus       181 Lq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE  226 (475)
                      ...-|+...-...--+.+.+.|+.+...++.++++++-.+..|++|
T Consensus       309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaE  354 (1243)
T KOG0971|consen  309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAE  354 (1243)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666667777888888888888888888888888554

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.08  E-value=0.0027  Score=68.32  Aligned_cols=8  Identities=13%  Similarity=0.247  Sum_probs=3.2

Q ss_pred             ccCCCCCc
Q 011909          441 VPLTDAPL  448 (475)
Q Consensus       441 vp~~dap~  448 (475)
                      +.|.|-|.
T Consensus       499 ~lilDEp~  506 (562)
T PHA02562        499 LLILDEVF  506 (562)
T ss_pred             eEEEeccc
Confidence            33444443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=98.04  E-value=0.0064  Score=68.73  Aligned_cols=100  Identities=24%  Similarity=0.291  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909           81 LLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL  160 (475)
Q Consensus        81 ~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdL  160 (475)
                      .-..++..-||-.||+|+.|.-.-.|-|.=|.-.|..|...-..++.++..|..+-++|+..+..+.+.+-.--..|..|
T Consensus       414 ~~~~~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~L  493 (697)
T PF09726_consen  414 NSEPDAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQL  493 (697)
T ss_pred             ccChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555677788888888777777776666665554443333333333333333333333333333333333333333


Q ss_pred             HhhhhHHHHHhhhhHHHHHh
Q 011909          161 RNQNDLHIQREGGLEMNIAN  180 (475)
Q Consensus       161 e~~~~s~~Qkea~Lee~I~q  180 (475)
                      +........+++.+|.+|..
T Consensus       494 EkrL~eE~~~R~~lEkQL~e  513 (697)
T PF09726_consen  494 EKRLAEERRQRASLEKQLQE  513 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444433

; GO: 0016021 integral to membrane

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=98.02  E-value=0.0051  Score=70.15  Aligned_cols=194  Identities=20%  Similarity=0.186  Sum_probs=115.6

Q ss_pred             HHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhH
Q 011909           87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQN-------------DLRMQKEATL  153 (475)
Q Consensus        87 ~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~-------------~~~LQkkA~l  153 (475)
                      ++..++-+.+|+.|+|..+-.=..|.+++..++..+..+++.+.....+++.|....             .......+..
T Consensus       109 ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~~~~~~~~~~~~~~~~  188 (775)
T PF10174_consen  109 LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAEAEEEDNEALRRIREA  188 (775)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccchhhhhHHHHHHHHH
Confidence            344555666666666665555566777777777777777777777777777776643             2344556666


Q ss_pred             HHHHHHHHhhhhHHHHHhhhh----H---------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909          154 EETIKQLRNQNDLHIQREGGL----E---------MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL  220 (475)
Q Consensus       154 E~kIKdLe~~~~s~~Qkea~L----e---------e~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl  220 (475)
                      +..+-.|+....-....-..+    +         ..-..|++.|+.+..+.+.++.-+..|.++...|...+...++.+
T Consensus       189 e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r  268 (775)
T PF10174_consen  189 EARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADR  268 (775)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence            666666665544333332111    1         112247788888888888888888888888777777666444433


Q ss_pred             HHH------HHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909          221 KLL------EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR  280 (475)
Q Consensus       221 ~~L------kaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq  280 (475)
                      ..+      ..-.-.+++.-+ -++-.|+....++..++..+..+.+.-......|.-|++.|....
T Consensus       269 ~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke  335 (775)
T PF10174_consen  269 DRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKE  335 (775)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            333      111112233334 555566666666666666666666666666666666665555443

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=98.01  E-value=0.013  Score=65.39  Aligned_cols=197  Identities=21%  Similarity=0.238  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 011909           77 ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK---------EKVATLEETIQQLQRQNDLRM  147 (475)
Q Consensus        77 ~~~~~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk---------~kl~~L~etikQLe~d~~~~L  147 (475)
                      |+..|=||-+  -+-+.+..|++|++-.+..=--|+..|..|+.++..-.         .....|+..+++|..++..+.
T Consensus        23 e~a~~qqr~~--qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~  100 (617)
T PF15070_consen   23 ESAQWQQRMQ--QMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLE  100 (617)
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            6677777766  77788889999998888877778888888777666221         222345555555555554444


Q ss_pred             HHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909          148 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAAL---EQKISQLRDESAALNMKRASLEERLKLLE  224 (475)
Q Consensus       148 QkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L---~peiekL~~Ee~~LkqkLasLEeKl~~Lk  224 (475)
                      .+....-..-..|..-+....++-..++.++..++....+..+-++.|   +.-+......|..|+++|.+++.....|-
T Consensus       101 ~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt  180 (617)
T PF15070_consen  101 EQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT  180 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            332221111222222222333334445555555555544433333322   34567778888999999999999888886


Q ss_pred             Hhhhh---hhhhhhchHHHHh-hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          225 ADKDS---WTQMESVSKETIA-GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL  279 (475)
Q Consensus       225 aERD~---WLkkEIsLke~IS-sl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel  279 (475)
                      +++-.   -|+.|-    .+. .+...+..|+.++..+.+.......+...|..+-+.+
T Consensus       181 ne~~elt~~lq~Eq----~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~  235 (617)
T PF15070_consen  181 NENMELTSALQSEQ----HVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQY  235 (617)
T ss_pred             HhhhHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            66532   233332    221 2333334444444444444444444555554444433

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.00  E-value=0.0049  Score=71.62  Aligned_cols=102  Identities=20%  Similarity=0.308  Sum_probs=57.5

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHH
Q 011909          175 EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRM  253 (475)
Q Consensus       175 ee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqe  253 (475)
                      ..+++.+..+|.....+.+++..+++........+.+++.+.++++..+..+=+. ...|| .+...+....-+...++.
T Consensus       280 ~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~-~d~Ei~~~r~~~~~~~re~~~~~~  358 (1074)
T KOG0250|consen  280 ERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDA-QDEEIEEARKDLDDLRREVNDLKE  358 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666667777777777777777777777777777777777777777554444 33444 444444444444444444


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHH
Q 011909          254 QVVELEESRNNLLQENRQLKENVS  277 (475)
Q Consensus       254 EVkeLEesr~eL~kEIqqLReqLd  277 (475)
                      ++.+.+.....+..++..++.+|.
T Consensus       359 ~~~~~~n~i~~~k~~~d~l~k~I~  382 (1074)
T KOG0250|consen  359 EIREIENSIRKLKKEVDRLEKQIA  382 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444433333333333333333

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.99  E-value=0.0064  Score=71.30  Aligned_cols=197  Identities=21%  Similarity=0.172  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHhhhcchhhhhHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011909           86 AMAILEETVKHLRNERESHIQKEATLE-GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN  164 (475)
Q Consensus        86 ~~~~~eeti~~l~~e~~~~~~~e~~l~-e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~  164 (475)
                      |.+-+++++|.|++...-..=.+..|+ +.+.-++.++.....++......++.|..+..+.-...-.++.+...+.+..
T Consensus       459 ~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~  538 (1317)
T KOG0612|consen  459 AVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSL  538 (1317)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555555433322222222222 2333344444444444444444444444444333333333333333333333


Q ss_pred             hHHHHHhhhhHHHHHhHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHH
Q 011909          165 DLHIQREGGLEMNIANLQSEKEF--WLQKE-AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKET  240 (475)
Q Consensus       165 ~s~~Qkea~Lee~I~qLq~EI~~--~~qEl-a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~  240 (475)
                      ....+-+..+++...-+..+.+.  +..+. ..+.-.+..+......+..++..++.-...|-.++-. ++.+. ...+.
T Consensus       539 ~kv~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~-~~~~~e~~~~~  617 (1317)
T KOG0612|consen  539 EKVNSLRKQLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKK-LRSELEKERRQ  617 (1317)
T ss_pred             hhHHHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            33333333344333333333332  11111 2333334444444445555555555444444333333 33444 56666


Q ss_pred             HhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909          241 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS  284 (475)
Q Consensus       241 ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiq  284 (475)
                      -..+...+..++.++..|++....+..+++.+++ +.....++.
T Consensus       618 ~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~e-l~r~~~e~~  660 (1317)
T KOG0612|consen  618 RTEISEIIAELKEEISSLEETLKAGKKELLKVEE-LKRENQERI  660 (1317)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHH
Confidence            6777777777888888888888888888877777 554444333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=97.98  E-value=0.0019  Score=70.71  Aligned_cols=241  Identities=18%  Similarity=0.254  Sum_probs=113.6

Q ss_pred             HHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909           93 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYK---------------EKVATLEETIQQLQRQNDLRMQKEATLEETI  157 (475)
Q Consensus        93 ti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk---------------~kl~~L~etikQLe~d~~~~LQkkA~lE~kI  157 (475)
                      .|..|..-.-.-|-|=-.|+..=+.|+..|+.+.               .++..+--.+.....++..+-.....++..+
T Consensus        43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~  122 (546)
T KOG0977|consen   43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREEL  122 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            4555555555556555555555555555555443               2333333333333334444444444444444


Q ss_pred             HHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhch
Q 011909          158 KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVS  237 (475)
Q Consensus       158 KdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsL  237 (475)
                      ++|+.......+-.....+++..+..-+.....+.+.++..+..+.++..-|+.....+...|..++...|.=+.-=+.+
T Consensus       123 ~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~  202 (546)
T KOG0977|consen  123 KELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDL  202 (546)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444555555555555555555566666666666666666666666666665555444422111233


Q ss_pred             HHHHhhhHHHHHHHH----HHHHHh-------------HHHHHHHHHHHHHHHHHHHHH------------Hhhhhhhhh
Q 011909          238 KETIAGLSVDITQLR----MQVVEL-------------EESRNNLLQENRQLKENVSSL------------RSQLSSDES  288 (475)
Q Consensus       238 ke~ISsl~~EiksLq----eEVkeL-------------Eesr~eL~kEIqqLReqLdel------------qseiqsLE~  288 (475)
                      ...+..+..++.-+.    .+|.++             +.....|...|+.+|.+.+.-            +..++.+..
T Consensus       203 ~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~  282 (546)
T KOG0977|consen  203 QNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRT  282 (546)
T ss_pred             HhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            333333333333332    222221             224445555555555555421            111222211


Q ss_pred             hh---hhhh---hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909          289 KK---LQHA---TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL  333 (475)
Q Consensus       289 Ee---al~e---~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l  333 (475)
                      ..   .++.   -||-++++..+.-|.+.|-.|...|..|+..+.+|..+|
T Consensus       283 ~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql  333 (546)
T KOG0977|consen  283 SAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQL  333 (546)
T ss_pred             hhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhh
Confidence            00   0000   245555666666666655555556666666555555554

>PRK11637 AmiB activator; Provisional

Probab=97.97  E-value=0.0072  Score=63.97  Aligned_cols=55  Identities=9%  Similarity=0.117  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909          111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  165 (475)
Q Consensus       111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~  165 (475)
                      +++.+++++.+|..+..++..+...+.+++.+...+-++...++..|..++..+.
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~   99 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLN   99 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444433333333333333333333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=97.96  E-value=0.0061  Score=70.83  Aligned_cols=11  Identities=27%  Similarity=-0.151  Sum_probs=8.2

Q ss_pred             CCCCcCCCchh
Q 011909          444 TDAPLIGAPFR  454 (475)
Q Consensus       444 ~dap~igapfr  454 (475)
                      .|.-.+||||+
T Consensus       627 ldg~~~~~~g~  637 (1074)
T KOG0250|consen  627 LDGRQIFAGGP  637 (1074)
T ss_pred             cCccccccCCC
Confidence            46677888887

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.94  E-value=0.029  Score=65.04  Aligned_cols=226  Identities=14%  Similarity=0.175  Sum_probs=120.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHH
Q 011909          110 TLEGTVQQLQNECDLYKEKVATLEETIQ-----QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE  184 (475)
Q Consensus       110 ~l~e~IkqLq~El~~lk~kl~~L~etik-----QLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~E  184 (475)
                      .....+.+|+.+++...++++.+...+.     ++.+++..+...+-..+..|++..........+-..++..++.... 
T Consensus       705 ~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~-  783 (1174)
T KOG0933|consen  705 AQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKA-  783 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-
Confidence            3455677777777777777777666553     3445555555555555555555555444444433222222222111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHH
Q 011909          185 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRN  263 (475)
Q Consensus       185 I~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~  263 (475)
                        ....++..+..+|..+....++-...+...+-....|+.|-+. +.+|+ +.+..+..+...+..|..++-.|.-...
T Consensus       784 --~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~-l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~  860 (1174)
T KOG0933|consen  784 --NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEE-LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVD  860 (1174)
T ss_pred             --hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1223344444555555554444444444444444455555554 45555 5555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhh----hhhh--hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909          264 NLLQENRQLKENVSSLRSQLSSDESKK----LQHA--TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS  337 (475)
Q Consensus       264 eL~kEIqqLReqLdelqseiqsLE~Ee----al~e--~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~  337 (475)
                      ........+...|.........+..+.    ..++  ..++..+..++..+--.+.++..+.....-++..|..+.+-..
T Consensus       861 ~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~  940 (1174)
T KOG0933|consen  861 KVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG  940 (1174)
T ss_pred             hHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence            555555555555554433333333332    1111  3466666666666777777777777777777777777665554


Q ss_pred             hh
Q 011909          338 VA  339 (475)
Q Consensus       338 ~~  339 (475)
                      .+
T Consensus       941 ~e  942 (1174)
T KOG0933|consen  941 DE  942 (1174)
T ss_pred             HH
Confidence            33

>PRK11637 AmiB activator; Provisional

Probab=97.92  E-value=0.019  Score=60.80  Aligned_cols=84  Identities=19%  Similarity=0.185  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHH
Q 011909          116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAAL  195 (475)
Q Consensus       116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L  195 (475)
                      ..++.+++.++++++.+...+.+++.+.....+.+..++..|..+...+....+.-..++.+|..++.+|.....++...
T Consensus        43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~  122 (428)
T PRK11637         43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ  122 (428)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666666666666666666666665555555555555555444444444444444444444444444333


Q ss_pred             HHHH
Q 011909          196 EQKI  199 (475)
Q Consensus       196 ~pei  199 (475)
                      ...+
T Consensus       123 ~~~l  126 (428)
T PRK11637        123 ERLL  126 (428)
T ss_pred             HHHH
Confidence            3333

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.88  E-value=0.032  Score=54.93  Aligned_cols=80  Identities=16%  Similarity=0.221  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHH
Q 011909          113 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE  192 (475)
Q Consensus       113 e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEl  192 (475)
                      +.|..|+.+++.+...+..+....+........+-...+.+.-+|..|+...+...++-.....+|..+...-+......
T Consensus         1 kK~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~   80 (237)
T PF00261_consen    1 KKIQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERAR   80 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777888888777777777777777777777777777777777777777766666655555555555444444433333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.87  E-value=0.037  Score=67.76  Aligned_cols=196  Identities=21%  Similarity=0.305  Sum_probs=97.0

Q ss_pred             HHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011909           89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI  168 (475)
Q Consensus        89 ~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~  168 (475)
                      -++-.|-+|++.-+..+..-..++..+-.|..++.....+...+..++.-+......+.+..+.+...-+.|.....-..
T Consensus        56 ~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~  135 (1822)
T KOG4674|consen   56 ELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQK  135 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555666666666666666677777777777777666555555555555555555555555555544444444433333


Q ss_pred             HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHH
Q 011909          169 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVD  247 (475)
Q Consensus       169 Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~E  247 (475)
                      ..-..+...++.|...+.+.-+.+..+..+.......-..+.-++..++.+...|+. -..||..+. ...+.+..+..+
T Consensus       136 ~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s-~~~wL~~eL~~~~ekll~~~re  214 (1822)
T KOG4674|consen  136 AELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLES-ENKWLSRELSKVNEKLLSLRRE  214 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhh
Confidence            232333333444444444444444444444444444444444444444444443333 234555555 444444333333


Q ss_pred             ----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          248 ----ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       248 ----iksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                          +..|+.++..+..+...+...+..|+.+...+...+..
T Consensus       215 ~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~  256 (1822)
T KOG4674|consen  215 HSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIES  256 (1822)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                44444444444444444444444444444444444333

>PRK03918 chromosome segregation protein; Provisional

Probab=97.86  E-value=0.051  Score=61.76  Aligned_cols=14  Identities=14%  Similarity=-0.028  Sum_probs=9.2

Q ss_pred             CccCCCCCcCCCch
Q 011909          440 AVPLTDAPLIGAPF  453 (475)
Q Consensus       440 ~vp~~dap~igapf  453 (475)
                      .+.|.|.|..|-.+
T Consensus       814 ~~lilDEp~~~lD~  827 (880)
T PRK03918        814 PLLILDEPTPFLDE  827 (880)
T ss_pred             CeEEEeCCCcccCH
Confidence            44567777777644

>PRK03918 chromosome segregation protein; Provisional

Probab=97.83  E-value=0.1  Score=59.36  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=19.1

Q ss_pred             chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          301 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ  336 (475)
Q Consensus       301 Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~  336 (475)
                      +..+.+.+...+..+.....++...+++|...++..
T Consensus       396 l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L  431 (880)
T PRK03918        396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEEL  431 (880)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555555555555666666665544433

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.81  E-value=0.046  Score=63.42  Aligned_cols=122  Identities=20%  Similarity=0.350  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHH--------------------------------------
Q 011909           85 EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYK--------------------------------------  126 (475)
Q Consensus        85 ~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk--------------------------------------  126 (475)
                      ..+|.+++-||.|+-|.+--.-.=--++..|.+|+++|..+.                                      
T Consensus       177 velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerl  256 (1195)
T KOG4643|consen  177 VELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERL  256 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhh
Confidence            346789999999987764433222223334444444443332                                      


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          127 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES  206 (475)
Q Consensus       127 ~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee  206 (475)
                      ............|+.|+.-++-.+.-++..|..|+...+.     +.++.+|-+|+..++....+.....-++++|..++
T Consensus       257 mDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-----~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEn  331 (1195)
T KOG4643|consen  257 MDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-----ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEEN  331 (1195)
T ss_pred             hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            1112234445666666666777777777777777665432     44555555555555555555555555666666666


Q ss_pred             HHHHH
Q 011909          207 AALNM  211 (475)
Q Consensus       207 ~~Lkq  211 (475)
                      ..|.-
T Consensus       332 stLq~  336 (1195)
T KOG4643|consen  332 STLQV  336 (1195)
T ss_pred             HHHHH
Confidence            55543

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.76  E-value=0.045  Score=65.30  Aligned_cols=201  Identities=18%  Similarity=0.254  Sum_probs=116.8

Q ss_pred             HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh-hHHH
Q 011909           90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN-DLHI  168 (475)
Q Consensus        90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~-~s~~  168 (475)
                      +++.+..+......+.-...-+++.++.....+..+..++..+....++.+.+...+......++.++......- ....
T Consensus       605 L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  684 (1201)
T PF12128_consen  605 LRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIE  684 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444455777777777777777777777777777777777777777777777776655543 3333


Q ss_pred             HHhhhhHHHHHhHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHhHHHHHH-------HHHHhhhhhhhhhh-
Q 011909          169 QREGGLEMNIANLQSEKEFWLQKEAA-LEQKI----SQLRDESAALNMKRASLEERLK-------LLEADKDSWTQMES-  235 (475)
Q Consensus       169 Qkea~Lee~I~qLq~EI~~~~qEla~-L~pei----ekL~~Ee~~LkqkLasLEeKl~-------~LkaERD~WLkkEI-  235 (475)
                      .+-..++.++..++.++..|..++.. +....    ..+....+.+..++..+...+.       .-+.+-+.|.+.|+ 
T Consensus       685 ~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~  764 (1201)
T PF12128_consen  685 EQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELA  764 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445666666776666666665421 11111    1122222333333333333332       22566677777776 


Q ss_pred             --ch-HHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhhhh
Q 011909          236 --VS-KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS---SLRSQLSSDESKK  290 (475)
Q Consensus       236 --sL-ke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd---elqseiqsLE~Ee  290 (475)
                        .. ...|..+...+..|.+++...+..+......-.-+++...   .+..+.+.+..+.
T Consensus       765 ~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~  825 (1201)
T PF12128_consen  765 GKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQL  825 (1201)
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Confidence              22 3478888888888888888888877776666555555433   3444444444433

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.76  E-value=0.052  Score=61.86  Aligned_cols=156  Identities=17%  Similarity=0.163  Sum_probs=100.4

Q ss_pred             CCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 011909           65 SNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL----EETIQQLQ  140 (475)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L----~etikQLe  140 (475)
                      |--+.|+.+.  |.-+++|-.| ++++|+.+.|+--|...--.-.-.++.++.++.+++.+++...-.    .+..+=|.
T Consensus       246 p~rk~~s~i~--E~d~~lq~sa-k~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh  322 (1265)
T KOG0976|consen  246 PLRKTCSMIE--EQDMDLQASA-KEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLH  322 (1265)
T ss_pred             hHhhhhHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            3345555553  6789999998 789999999998887766666666778888888888877665443    44455677


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909          141 RQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL  220 (475)
Q Consensus       141 ~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl  220 (475)
                      .++-.+...++.+.|.+++-+...+.--.+..+|+.+-.-+.....+..+++...+.++..|...-+.+.++++.+..++
T Consensus       323 ~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~i  402 (1265)
T KOG0976|consen  323 LENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHI  402 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            78888888888888888877776665555555555544444444444444444444444445444444444444444444


Q ss_pred             HHH
Q 011909          221 KLL  223 (475)
Q Consensus       221 ~~L  223 (475)
                      -.|
T Consensus       403 f~~  405 (1265)
T KOG0976|consen  403 FRL  405 (1265)
T ss_pred             hhh
Confidence            333

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.76  E-value=0.069  Score=54.91  Aligned_cols=172  Identities=17%  Similarity=0.265  Sum_probs=97.8

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhh----hhHHHHHhHH
Q 011909          107 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG----GLEMNIANLQ  182 (475)
Q Consensus       107 ~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea----~Lee~I~qLq  182 (475)
                      +|.+|-++|-++.-++..++.+-..|       ......--+.+..+|..|.-++....+..+.-.    .--.-=-.++
T Consensus        50 neE~ltkTi~qy~~QLn~L~aENt~L-------~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlelafq  122 (305)
T PF14915_consen   50 NEETLTKTIFQYNGQLNVLKAENTML-------NSKLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQ  122 (305)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHH-------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHH
Confidence            34444455555544444444433332       222222334444555555555554444443322    1111123478


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHhhhhhhhhhh---chHHHHhhhHHH--------
Q 011909          183 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EADKDSWTQMES---VSKETIAGLSVD--------  247 (475)
Q Consensus       183 ~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L----kaERD~WLkkEI---sLke~ISsl~~E--------  247 (475)
                      ..-+.|..=-..|.-.+..|++.+..|.|+|...+.+.+.|    ..-||.+--+-+   .+.+.++.-...        
T Consensus       123 r~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~  202 (305)
T PF14915_consen  123 RARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMY  202 (305)
T ss_pred             HHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999889999999999999999999999999999988    555666533332   222222111111        


Q ss_pred             ------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          248 ------ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       248 ------iksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                            +..-...-..+++...++..++.-|+.+|+.++.....
T Consensus       203 qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~  246 (305)
T PF14915_consen  203 QNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADN  246 (305)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  11112222345566677777777777777777666554

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.70  E-value=0.056  Score=66.22  Aligned_cols=245  Identities=19%  Similarity=0.250  Sum_probs=151.1

Q ss_pred             HHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Q 011909           86 AMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEAT-------------  152 (475)
Q Consensus        86 ~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~-------------  152 (475)
                      +...|.+++-.-....+.-  ...+++.+|..+.+.|..++..+......+.-|-.+++.+-+..+.             
T Consensus       547 ~vR~Lae~lE~~E~~~~~~--~~~~~k~~~~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~  624 (1822)
T KOG4674|consen  547 AVRELAEKLEAAEKTQDKT--LQNILKETINEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSA  624 (1822)
T ss_pred             HHHHHHHHHHHHhhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchh
Confidence            5455555554444444333  3456777777777777777777777777777777777766333332             


Q ss_pred             ---------HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909          153 ---------LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  223 (475)
Q Consensus       153 ---------lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L  223 (475)
                               ++.++++|+....+.   ...--+.+..++.++++...+...|..++.++..+-..-+.++.-|..-+..+
T Consensus       625 ~~~t~~~~~~e~~l~qLe~~le~~---~~E~~~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~  701 (1822)
T KOG4674|consen  625 LDQTEAPRAKEKRLRQLENELESY---KKEKRENLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELT  701 (1822)
T ss_pred             hcccccchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence                     355566666665532   22334455666666666666666677777777666666666666666666655


Q ss_pred             HH------hhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh---
Q 011909          224 EA------DKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH---  293 (475)
Q Consensus       224 ka------ERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~---  293 (475)
                      ++      +|..||+.-| +=+..+.....++.+....+..++.....|.+|...++.--..+..++.+|..+.-.-   
T Consensus       702 K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~  781 (1822)
T KOG4674|consen  702 KEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLL  781 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33      6777877777 5555566666666666666666666666666666666555555555544444333111   


Q ss_pred             --------------hhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909          294 --------------ATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDR  335 (475)
Q Consensus       294 --------------e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~  335 (475)
                                    .++...++..+|+.|...|.+|....+.-..++.+|...++.
T Consensus       782 l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~  837 (1822)
T KOG4674|consen  782 LDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEK  837 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                          134667777777777777777777666666666666655543

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.67  E-value=0.048  Score=62.46  Aligned_cols=101  Identities=20%  Similarity=0.177  Sum_probs=60.0

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHH
Q 011909          177 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQV  255 (475)
Q Consensus       177 ~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEV  255 (475)
                      -|..|+..+..+.++-+.|..+++.|..+...-...+...++.+..++.|+.- ++.|| .++..+......+..|+..+
T Consensus       323 hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~-~~~Ei~~l~d~~d~~e~ki~~Lq~ki  401 (775)
T PF10174_consen  323 HIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSR-LQGEIEDLRDMLDKKERKINVLQKKI  401 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444445555543 77777 77777777777777777777


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHH
Q 011909          256 VELEESRNNLLQENRQLKENVSS  278 (475)
Q Consensus       256 keLEesr~eL~kEIqqLReqLde  278 (475)
                      ..|++....-...+..++..+..
T Consensus       402 e~Lee~l~ekd~ql~~~k~Rl~~  424 (775)
T PF10174_consen  402 ENLEEQLREKDRQLDEEKERLSS  424 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            77777777777777777666663

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.65  E-value=0.021  Score=55.31  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=14.6

Q ss_pred             HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909          153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF  187 (475)
Q Consensus       153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~  187 (475)
                      ++..+.+|+....+.......|..+-.+++.++..
T Consensus        65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~   99 (193)
T PF14662_consen   65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQS   99 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444443333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=97.63  E-value=0.17  Score=57.86  Aligned_cols=173  Identities=14%  Similarity=0.086  Sum_probs=96.6

Q ss_pred             HHHHHHHHhhhcchhhhh---------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909           88 AILEETVKHLRNERESHI---------QKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIK  158 (475)
Q Consensus        88 ~~~eeti~~l~~e~~~~~---------~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIK  158 (475)
                      +.+.||...-.-+|.+||         |.+.++.+.+-.|++.+..++..+..|+..-..++.+...+--.++.++..++
T Consensus        58 dalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~k  137 (1265)
T KOG0976|consen   58 DALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKK  137 (1265)
T ss_pred             HHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555554         77777777777777777777777777777777777776666666666666666


Q ss_pred             HHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------
Q 011909          159 QLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ-------KEAALEQKISQLRDESAALNMKRASLEERLKLL--------  223 (475)
Q Consensus       159 dLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~q-------Ela~L~peiekL~~Ee~~LkqkLasLEeKl~~L--------  223 (475)
                      +-+.+++..-.+--.+++.|.--..+|-....       ++..+..+|..+..+++.++..+..+-.+...-        
T Consensus       138 e~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~k~~e~~~~nD~~s  217 (1265)
T KOG0976|consen  138 ENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLEKFKEDLIEKDQKS  217 (1265)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH
Confidence            66666665555544444444444444443332       334455555555555555555444443333311        


Q ss_pred             -HHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHH
Q 011909          224 -EADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEE  260 (475)
Q Consensus       224 -kaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEe  260 (475)
                       .--.+.-+.++| .-..+++++...+..+++-...+++
T Consensus       218 le~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E  256 (1265)
T KOG0976|consen  218 LELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEE  256 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHH
Confidence             111222244444 4445556666555555544444443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.14  Score=57.90  Aligned_cols=122  Identities=17%  Similarity=0.208  Sum_probs=82.5

Q ss_pred             HHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh--h
Q 011909          219 RLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA--T  295 (475)
Q Consensus       219 Kl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e--~  295 (475)
                      +.+.|..+++. |...| .++.....+...+..|.+++..|......+..++..+...+..+......++....-..  +
T Consensus       497 ~~k~L~~ek~~-l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~  575 (698)
T KOG0978|consen  497 KHKLLREEKSK-LEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIEL  575 (698)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444 45555 66666666666777777777777777777777777777777766666666555443222  2


Q ss_pred             h----hhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 011909          296 S----EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAG  341 (475)
Q Consensus       296 e----En~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~~~~  341 (475)
                      +    .-+++..+...+...++.+.....+|+++...|..+|-......+
T Consensus       576 ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~  625 (698)
T KOG0978|consen  576 EKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES  625 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            2    445677777788889999999999999999999998855544433

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.017  Score=65.66  Aligned_cols=97  Identities=15%  Similarity=0.201  Sum_probs=76.0

Q ss_pred             chhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh----------HHHH
Q 011909          100 ERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND----------LHIQ  169 (475)
Q Consensus       100 e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~----------s~~Q  169 (475)
                      ++|..+|+   +...|+.++.++..+++....|+..+++|+.+..+..-..+.+......|+...+          .-.+
T Consensus       654 ~l~~~~~k---yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q~~e  730 (970)
T KOG0946|consen  654 ELDDIQQK---YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQGAE  730 (970)
T ss_pred             HHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHhHHH
Confidence            34555555   8999999999999999999999999999999999999999999999999998877          2233


Q ss_pred             HhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909          170 REGGLEMNIANLQSEKEFWLQKEAALEQKI  199 (475)
Q Consensus       170 kea~Lee~I~qLq~EI~~~~qEla~L~pei  199 (475)
                      .-....+.++.+..++.....+...+..++
T Consensus       731 ~~~t~~eel~a~~~e~k~l~~~q~~l~~~L  760 (970)
T KOG0946|consen  731 ASKTQNEELNAALSENKKLENDQELLTKEL  760 (970)
T ss_pred             hccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333456667777777777666655555555

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=97.55  E-value=0.12  Score=53.08  Aligned_cols=116  Identities=19%  Similarity=0.280  Sum_probs=81.1

Q ss_pred             HHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hhhhhh----
Q 011909          222 LLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK--KLQHAT----  295 (475)
Q Consensus       222 ~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~E--eal~e~----  295 (475)
                      .++.+||.|+.-.-.+.-.++.+...+.-|..++...+...++|.-+....++.|-+-..-+..+...  .+.|++    
T Consensus       120 afqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e  199 (305)
T PF14915_consen  120 AFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIE  199 (305)
T ss_pred             HHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45999999999888899999999999999999999999999999999988888776443222222222  233431    


Q ss_pred             ----hhhh---hchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909          296 ----SEQK---DFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS  337 (475)
Q Consensus       296 ----eEn~---~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~  337 (475)
                          -|..   +.....+.+..-+-.++.+|.-|..-+.+...+.+...
T Consensus       200 ~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke  248 (305)
T PF14915_consen  200 HMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE  248 (305)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                1222   22335566666777778888777766666666555444

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.51  E-value=0.22  Score=60.92  Aligned_cols=140  Identities=7%  Similarity=0.087  Sum_probs=77.4

Q ss_pred             HHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhh-
Q 011909          154 EETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ-  232 (475)
Q Consensus       154 E~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLk-  232 (475)
                      ...+.+|........+.-..+.+++..++.++.....++..+..++..+......+..++..++..+..|...+ .|.. 
T Consensus       354 ~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~-~~~~~  432 (1486)
T PRK04863        354 QADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAK-QLCGL  432 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCC
Confidence            33344444444433333333333344444444443444444433343333344444444444444444443332 2332 


Q ss_pred             hhh---chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011909          233 MES---VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA  294 (475)
Q Consensus       233 kEI---sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e  294 (475)
                      ..+   .|...+......+..+..++..++.....+...+..++.....+.+....+....|-..
T Consensus       433 ~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~  497 (1486)
T PRK04863        433 PDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDV  497 (1486)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHH
Confidence            122   57777788888888888888888888888888888888888888777777666666543

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.50  E-value=0.021  Score=57.03  Aligned_cols=52  Identities=17%  Similarity=0.279  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909          114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  165 (475)
Q Consensus       114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~  165 (475)
                      .|+.|+.+++.+.+....-....+.++.+.+.+-+....++..+.+|+..+.
T Consensus        11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~   62 (239)
T COG1579          11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS   62 (239)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3557777777777777777777777777777777777777777777666544

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.48  E-value=0.072  Score=62.96  Aligned_cols=174  Identities=18%  Similarity=0.232  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhhhcchhhhh-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909           87 MAILEETVKHLRNERESHI-QKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  165 (475)
Q Consensus        87 ~~~~eeti~~l~~e~~~~~-~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~  165 (475)
                      .+=++|||.+|+.+-...- +.+++++..++.........+.+...|....++++.+.+.+-++...+-.....+-....
T Consensus       467 ~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk  546 (1317)
T KOG0612|consen  467 DKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRK  546 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3468899999877664444 466777777777776666666666666666666666666665555554332222222222


Q ss_pred             HHHHHhhhhH----------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh
Q 011909          166 LHIQREGGLE----------MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES  235 (475)
Q Consensus       166 s~~Qkea~Le----------e~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI  235 (475)
                      ........+.          ...+.+-..|.+-..+-..+...+..|......+......+......+...|.. +..++
T Consensus       547 ~le~~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~-~~e~~  625 (1317)
T KOG0612|consen  547 QLEEAELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTE-ISEII  625 (1317)
T ss_pred             HHHHhhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence            2222211111          111122222222222223444444444444444444433333333333333333 33444


Q ss_pred             -chHHHHhhhHHHHHHHHHHHHHhHHH
Q 011909          236 -VSKETIAGLSVDITQLRMQVVELEES  261 (475)
Q Consensus       236 -sLke~ISsl~~EiksLqeEVkeLEes  261 (475)
                       .++..|+++...+..+..++..+++.
T Consensus       626 ~~l~~~i~sL~~~~~~~~~~l~k~~el  652 (1317)
T KOG0612|consen  626 AELKEEISSLEETLKAGKKELLKVEEL  652 (1317)
T ss_pred             HHHHhHHHHHHHHHHhhhhHHHHHHHH
Confidence             56666666666666555555555553

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=97.47  E-value=0.16  Score=60.74  Aligned_cols=162  Identities=23%  Similarity=0.375  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh-HHHHHHHHHHHHHHHHHH
Q 011909          120 NECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN-LQSEKEFWLQKEAALEQK  198 (475)
Q Consensus       120 ~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q-Lq~EI~~~~qEla~L~pe  198 (475)
                      +....++..++.....+..+..+...+.......+..+..|+...       ..+..++.. ++........++..+..+
T Consensus       621 ~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~l~~~  693 (1201)
T PF12128_consen  621 ERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNER-------EQLKQEIEEAKEERKEQIEEQLNELEEE  693 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333344444444444444444444444444444433       333333222 222333344444444555


Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhh-hhhhhhhchHHHHhhhHHHHHHHHHH----HHHhHHHHHH------H-H
Q 011909          199 ISQLRDESAALNMKRASLEERLKLLEADKD-SWTQMESVSKETIAGLSVDITQLRMQ----VVELEESRNN------L-L  266 (475)
Q Consensus       199 iekL~~Ee~~LkqkLasLEeKl~~LkaERD-~WLkkEIsLke~ISsl~~EiksLqeE----VkeLEesr~e------L-~  266 (475)
                      +..+..+-..+...   +......+..++. .|...+-.+...|..+..++...+.+    +..++....+      . .
T Consensus       694 l~~~~~e~~~~~~~---~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~  770 (1201)
T PF12128_consen  694 LKQLKQELEELLEE---LKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDP  770 (1201)
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            54444444444332   2222333332222 22222225555555555555543333    3333332222      1 1


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909          267 QENRQLKENVSSLRSQLSSDESKKL  291 (475)
Q Consensus       267 kEIqqLReqLdelqseiqsLE~Eea  291 (475)
                      ..|..++.++..+..++..++....
T Consensus       771 ~~I~~l~~~i~~L~~~l~~ie~~r~  795 (1201)
T PF12128_consen  771 ERIQQLKQEIEQLEKELKRIEERRA  795 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            2455555555555555555554443

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.43  E-value=0.42  Score=55.96  Aligned_cols=183  Identities=21%  Similarity=0.239  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhhhc----------chhhhhHHHhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909           87 MAILEETVKHLRN----------ERESHIQKEATLEGTV-----QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEA  151 (475)
Q Consensus        87 ~~~~eeti~~l~~----------e~~~~~~~e~~l~e~I-----kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA  151 (475)
                      ++-+|+-|+-|++          +.++-..+=+++++.+     .++.+.+..+...+..+..+|+..+.-...+..+..
T Consensus       693 l~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~  772 (1174)
T KOG0933|consen  693 LEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKIS  772 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455655555544          3344444444444433     345555556666666666666665555555555555


Q ss_pred             hHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhh
Q 011909          152 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT  231 (475)
Q Consensus       152 ~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WL  231 (475)
                      .+|-.+++-....   ..+-..+...|+.+....+....++..-..+|+.|.-+-.++.+.+...+..+.++...-+. |
T Consensus       773 ~lE~~~~d~~~~r---e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~-l  848 (1174)
T KOG0933|consen  773 TLEKKMKDAKANR---ERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISS-L  848 (1174)
T ss_pred             HHHHHHhHhhhhh---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence            5555555443332   22222334444444443333333333222233333333333333333222222222221112 3


Q ss_pred             hhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011909          232 QMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK  273 (475)
Q Consensus       232 kkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLR  273 (475)
                      ..|+ .+...+.....+...++.++.....-...++.++..+-
T Consensus       849 ~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~  891 (1174)
T KOG0933|consen  849 KSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLL  891 (1174)
T ss_pred             HHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhh
Confidence            3344 44444444444444555555554444444444443333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=97.42  E-value=0.21  Score=56.87  Aligned_cols=40  Identities=20%  Similarity=0.424  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          246 VDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       246 ~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      .+|..|+.|+...+.+...|...++.++.+|+..+..++.
T Consensus       265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~  304 (717)
T PF09730_consen  265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSE  304 (717)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788888888877777777777777777655555444

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PRK09039 hypothetical protein; Validated

Probab=97.41  E-value=0.014  Score=60.82  Aligned_cols=121  Identities=21%  Similarity=0.245  Sum_probs=68.9

Q ss_pred             HHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-
Q 011909          157 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-  235 (475)
Q Consensus       157 IKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-  235 (475)
                      |.+|-+..+........++..|..|+..+.......+.++..|..+......+..++..++.++..++.        ++ 
T Consensus        62 Ia~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~--------~~s  133 (343)
T PRK09039         62 IAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQ--------VSA  133 (343)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHH--------HHH
Confidence            333555555555555556666666666666555555555555554433334444445555444443332        33 


Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      .....|..++.+|..|+.++..|+.............+.+|+.++.++..
T Consensus       134 e~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~  183 (343)
T PRK09039        134 RALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV  183 (343)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666777777777776666666666666666666666666555544

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.41  E-value=0.099  Score=53.84  Aligned_cols=150  Identities=20%  Similarity=0.222  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          134 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR  213 (475)
Q Consensus       134 etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkL  213 (475)
                      .+.+.+=...=..+|.-|.++.+-.=++=.......-...|+..+..|+.+.......+..+.+-+..+....+.|..++
T Consensus       114 ~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~  193 (325)
T PF08317_consen  114 PDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEEL  193 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333445556666655544444444444444556666777777777766666667776777777777776666


Q ss_pred             HhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909          214 ASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  287 (475)
Q Consensus       214 asLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE  287 (475)
                      ..+.+....+. .-   =+.++ .++..|+.+..++...+.++.+++..+..+...|..+..+...+..++..++
T Consensus       194 ~~Lk~~~~e~~-~~---D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  194 ENLKQLVEEIE-SC---DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHhhhh-hc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66655544431 11   12455 6777777777777777777777777777777777777777777776666644

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=97.40  E-value=0.079  Score=61.59  Aligned_cols=42  Identities=24%  Similarity=0.317  Sum_probs=36.5

Q ss_pred             hhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909          297 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSV  338 (475)
Q Consensus       297 En~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~  338 (475)
                      ++++|+...+-+...+..+.+.+++|++..+.|..+++....
T Consensus       409 e~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~  450 (1195)
T KOG4643|consen  409 EHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE  450 (1195)
T ss_pred             HhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            779999999999999999999999999998888877655443

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.38  E-value=0.085  Score=59.92  Aligned_cols=40  Identities=20%  Similarity=0.301  Sum_probs=29.5

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN  275 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReq  275 (475)
                      .++.....+..++..|+.+++..|+....++.+++.||.-
T Consensus       542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~  581 (697)
T PF09726_consen  542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY  581 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777777777777777777777777777766653

; GO: 0016021 integral to membrane

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.38  E-value=0.079  Score=59.15  Aligned_cols=93  Identities=24%  Similarity=0.211  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhh---hHHHHHhHHHHHHHH
Q 011909          112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG---LEMNIANLQSEKEFW  188 (475)
Q Consensus       112 ~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~---Lee~I~qLq~EI~~~  188 (475)
                      +..+..|+.+++.+...+..+...++.+..............+.....++........--..   -+..|..|+.-++..
T Consensus       327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s  406 (594)
T PF05667_consen  327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS  406 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            44555666666666666666666666666666666666666666666666665544444332   345688888888888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 011909          189 LQKEAALEQKISQLRD  204 (475)
Q Consensus       189 ~qEla~L~peiekL~~  204 (475)
                      .+++..|..+|+..+.
T Consensus       407 ~~rl~~L~~qWe~~R~  422 (594)
T PF05667_consen  407 EQRLVELAQQWEKHRA  422 (594)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8888888888776543

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.36  E-value=0.16  Score=49.33  Aligned_cols=48  Identities=19%  Similarity=0.282  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909          114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLR  161 (475)
Q Consensus       114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe  161 (475)
                      .|.+|+..+..+..+...|+..+...++-...+....+.+...++.++
T Consensus         9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q   56 (193)
T PF14662_consen    9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ   56 (193)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666666666666666655555555555555555553

>PRK01156 chromosome segregation protein; Provisional

Probab=97.35  E-value=0.49  Score=54.48  Aligned_cols=110  Identities=16%  Similarity=0.168  Sum_probs=58.1

Q ss_pred             HHHHHHHHHH--------HHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909           75 EAERQHLLQR--------EAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR  146 (475)
Q Consensus        75 ~~~~~~~~~~--------~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~  146 (475)
                      .++|..||.+        .+|+-+.++++.++.+    +..-..+...+..++.++..+..++..+...+..+.......
T Consensus       148 ~~~r~~~ld~~~~~~~~~~~~~~~~~~~~~~~~e----i~~le~~~~~l~~~e~eL~~~~~~i~el~~~~~~l~~~i~~~  223 (895)
T PRK01156        148 PAQRKKILDEILEINSLERNYDKLKDVIDMLRAE----ISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERL  223 (895)
T ss_pred             HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567666643        2334444555554443    333334455556666666666666666666666666655555


Q ss_pred             HHHHHhHHHHHHHHHhhhhHH---HHHhhhhHHHHHhHHHHHHHH
Q 011909          147 MQKEATLEETIKQLRNQNDLH---IQREGGLEMNIANLQSEKEFW  188 (475)
Q Consensus       147 LQkkA~lE~kIKdLe~~~~s~---~Qkea~Lee~I~qLq~EI~~~  188 (475)
                      ......+...+..|+......   ..+-..++.+|+.++..+..+
T Consensus       224 ~~el~~~~~~l~~l~~~l~~l~~~~~~~~~~e~~i~ele~~l~el  268 (895)
T PRK01156        224 SIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSME  268 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555555555443333   333334455555555554443

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=97.35  E-value=0.26  Score=52.49  Aligned_cols=199  Identities=9%  Similarity=0.104  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 011909          117 QLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE  196 (475)
Q Consensus       117 qLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~  196 (475)
                      ++...|..+..++...+..+.+.+.+++..-+.....-..-+-.+.......++.....+.+.++........+++..+.
T Consensus        78 di~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~  157 (499)
T COG4372          78 DIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLA  157 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555556666666666666666555554444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh-hhhh-h-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011909          197 QKISQLRDESAALNMKRASLEERLKLLEADKDSW-TQME-S-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK  273 (475)
Q Consensus       197 peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~W-LkkE-I-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLR  273 (475)
                      .++.+|..+..+|--.-..|+.-..+|+.++-.+ +..+ | --...+......+.++.+++..++-..-++..+|+++-
T Consensus       158 ~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd  237 (499)
T COG4372         158 EQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD  237 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444443333333333233332222110 0000 1 11223445555556666666666666666777777776


Q ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHH
Q 011909          274 ENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLI  316 (475)
Q Consensus       274 eqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~  316 (475)
                      .+++..-.++.. ..+.....-+-.++|..++.+|.-.+..|.
T Consensus       238 ~~i~q~~q~iaa-r~e~I~~re~~lq~lEt~q~~leqeva~le  279 (499)
T COG4372         238 AQISQKAQQIAA-RAEQIRERERQLQRLETAQARLEQEVAQLE  279 (499)
T ss_pred             HHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666555555 222222223344555555555555554443

>PRK01156 chromosome segregation protein; Provisional

Probab=97.30  E-value=0.55  Score=54.08  Aligned_cols=12  Identities=33%  Similarity=0.445  Sum_probs=5.0

Q ss_pred             CcCCCchhHHHH
Q 011909          447 PLIGAPFRLVSF  458 (475)
Q Consensus       447 p~igapfrlisf  458 (475)
                      +|-|.--+.+++
T Consensus       801 ~lS~G~~~~~~l  812 (895)
T PRK01156        801 SLSGGEKTAVAF  812 (895)
T ss_pred             cCCHhHHHHHHH
Confidence            344444444443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.30  E-value=0.29  Score=57.94  Aligned_cols=41  Identities=15%  Similarity=0.195  Sum_probs=23.3

Q ss_pred             HHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 011909           91 EETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVAT  131 (475)
Q Consensus        91 eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~  131 (475)
                      .+-|.=|+.||+...-+.-..+..+....+++.....++..
T Consensus       305 ~~al~fL~kenel~~~~~~~~q~~~~~~~~ki~~~~~~~~~  345 (1293)
T KOG0996|consen  305 NEALEFLKKENELFRKKNKLCQYILYESRAKIAEMQEELEK  345 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677777766555555555555555555544444333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.29  E-value=0.51  Score=53.47  Aligned_cols=169  Identities=17%  Similarity=0.120  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 011909          114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA  193 (475)
Q Consensus       114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla  193 (475)
                      .|++|++.+.....=++++.+-|..|+.+...+-+-++-.|..=|.++..++-+.-......+...+++..++.+..+..
T Consensus       475 iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~  554 (961)
T KOG4673|consen  475 IIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQAL  554 (961)
T ss_pred             HHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            34555555554444445555555555555555555555555555555555444443333334444444455555444443


Q ss_pred             HHHHHHHHH---------------HHHHHHHHHHHHhHHHHHHHH---HHhhhhhhhhhh-chHHHHhhhHHHHHH----
Q 011909          194 ALEQKISQL---------------RDESAALNMKRASLEERLKLL---EADKDSWTQMES-VSKETIAGLSVDITQ----  250 (475)
Q Consensus       194 ~L~peiekL---------------~~Ee~~LkqkLasLEeKl~~L---kaERD~WLkkEI-sLke~ISsl~~Eiks----  250 (475)
                      .+..-+..+               ..+...|-+++..|-.+++.-   -+-|..++..|| .|.+.+..-..-+..    
T Consensus       555 a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~  634 (961)
T KOG4673|consen  555 AEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQ  634 (961)
T ss_pred             HHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333322222               222233333333333333322   455777899999 898888654444433    


Q ss_pred             -------HHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHhh
Q 011909          251 -------LRMQVVELEE----SRNNLLQENRQLKENVSSLRSQ  282 (475)
Q Consensus       251 -------LqeEVkeLEe----sr~eL~kEIqqLReqLdelqse  282 (475)
                             |..+|..|..    ....|..+-+.|.++|+..+..
T Consensus       635 v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtl  677 (961)
T KOG4673|consen  635 VPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTL  677 (961)
T ss_pred             ccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHH
Confidence                   4455555444    5567888889999999854443

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.27  E-value=0.76  Score=56.43  Aligned_cols=128  Identities=10%  Similarity=0.030  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011909          140 QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEER  219 (475)
Q Consensus       140 e~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeK  219 (475)
                      ..+...+......++.++.++.............++.++..++.++..+..+++.+...+..+..+...+.+.+..++.-
T Consensus       347 q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~  426 (1486)
T PRK04863        347 QEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERA  426 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444445555555555666666665555556666666666666666666666666666666666666666666655554


Q ss_pred             HHHHH--Hhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 011909          220 LKLLE--ADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQ  267 (475)
Q Consensus       220 l~~Lk--aERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~k  267 (475)
                      ...+.  .=-+.||...+ .....+..+..++..+..++..++.....+.+
T Consensus       427 ~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~  477 (1486)
T PRK04863        427 KQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQ  477 (1486)
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44441  22233444444 44444444444444444444444444444333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.25  E-value=0.51  Score=53.45  Aligned_cols=240  Identities=25%  Similarity=0.245  Sum_probs=129.9

Q ss_pred             HHHHHHHHHH-HHHHHHHHHHhhhcch--------------hhhhHHHhhHHHHHHHHHHHHHHHHHH------------
Q 011909           76 AERQHLLQRE-AMAILEETVKHLRNER--------------ESHIQKEATLEGTVQQLQNECDLYKEK------------  128 (475)
Q Consensus        76 ~~~~~~~~~~-~~~~~eeti~~l~~e~--------------~~~~~~e~~l~e~IkqLq~El~~lk~k------------  128 (475)
                      |--+++++-| +-++++|...++..+-              +-..|+=+.|++.++-+-.+-+.+.++            
T Consensus       364 aReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l  443 (961)
T KOG4673|consen  364 AREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAAL  443 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence            4456676655 3457888666655443              445677777777776665555544433            


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHH------------
Q 011909          129 ----VATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE------------  192 (475)
Q Consensus       129 ----l~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEl------------  192 (475)
                          |+...+-|++|..+=..+.++...-.--||.|+-....+.--....-+.|..|++|-...++=+            
T Consensus       444 ~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E  523 (961)
T KOG4673|consen  444 LKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQE  523 (961)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence                4444556677777777788888777888888887776666555555555555555544333222            


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh---hhhhhchH-----HHHhhhHHHHHHHHHHHHHhHHHH
Q 011909          193 --AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW---TQMESVSK-----ETIAGLSVDITQLRMQVVELEESR  262 (475)
Q Consensus       193 --a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~W---LkkEIsLk-----e~ISsl~~EiksLqeEVkeLEesr  262 (475)
                        .++..++....+.++.+.-..+.++++...+++.-|..   |+++..++     ..-+.+-.++..|+.-+..-|.  
T Consensus       524 ~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq--  601 (961)
T KOG4673|consen  524 TIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQ--  601 (961)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence              22333333444444444455666777777776666553   33444333     2222333333333333322222  


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhh--hhhh-hhhhhhchHHHHHHHhHHHHHHHH
Q 011909          263 NNLLQENRQLKENVSSLRSQLSSDESKK--LQHA-TSEQKDFSTQIEAAGALIDKLITE  318 (475)
Q Consensus       263 ~eL~kEIqqLReqLdelqseiqsLE~Ee--al~e-~eEn~~Ls~E~E~l~s~vekL~~e  318 (475)
                       ++...-+.+|..+..++.+++.-+...  ...+ -+-.+=|-+|||.+...+.+..+-
T Consensus       602 -~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~ta  659 (961)
T KOG4673|consen  602 -QAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATA  659 (961)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhH
Confidence             122223344444444444444422211  1111 135667788888888888777543

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.24  E-value=0.07  Score=53.42  Aligned_cols=38  Identities=26%  Similarity=0.263  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909          183 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL  220 (475)
Q Consensus       183 ~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl  220 (475)
                      ..+.....++..++.++.++..+...+..++...+.++
T Consensus        45 ~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          45 KALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444555554444

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=97.24  E-value=0.024  Score=58.36  Aligned_cols=56  Identities=27%  Similarity=0.414  Sum_probs=33.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909          110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  165 (475)
Q Consensus       110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~  165 (475)
                      +++..+..|+..+..+....+.|......+..-...+....+.++.++..|+....
T Consensus       146 ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~  201 (325)
T PF08317_consen  146 LLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE  201 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555555555666666666666666666666666666666666666666665543

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=97.23  E-value=0.14  Score=55.50  Aligned_cols=162  Identities=20%  Similarity=0.258  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcch---hhhhH----HHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 011909           77 ERQHLLQREAMAILEETVKHLRNER---ESHIQ----KEATLEGTVQQLQNECDLYK---EKVATLEETIQQLQRQNDLR  146 (475)
Q Consensus        77 ~~~~~~~~~~~~~~eeti~~l~~e~---~~~~~----~e~~l~e~IkqLq~El~~lk---~kl~~L~etikQLe~d~~~~  146 (475)
                      |..+-+ .|+|| |-|+|++|+..|   .+.||    .-..|++.|+.||..+..-.   .=+..|...+..|=+|.=..
T Consensus       304 Eslqpl-eedma-LNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~v  381 (527)
T PF15066_consen  304 ESLQPL-EEDMA-LNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRV  381 (527)
T ss_pred             hccCCc-HHHHH-HHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHh
Confidence            555556 46665 789999999887   44444    24567777777777665332   22233333444444444444


Q ss_pred             HHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011909          147 MQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD  226 (475)
Q Consensus       147 LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE  226 (475)
                      +=.+..++-+++.|+..       -+.....|..-+.++..+..++-.|+..|-.|+++....-|              .
T Consensus       382 iLEKnd~~k~lqnLqe~-------la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQ--------------q  440 (527)
T PF15066_consen  382 ILEKNDIEKTLQNLQEA-------LANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQ--------------Q  440 (527)
T ss_pred             hhhhhhHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------H
Confidence            44444445555555443       33334456666778888888888888888888877665433              3


Q ss_pred             hhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHH
Q 011909          227 KDSWTQMESVSKETIAGLSVDITQLRMQVVELEES  261 (475)
Q Consensus       227 RD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEes  261 (475)
                      |+..+..=+.+.+.++....++..|+.--.+||.+
T Consensus       441 KnksvsqclEmdk~LskKeeeverLQ~lkgelEka  475 (527)
T PF15066_consen  441 KNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKA  475 (527)
T ss_pred             hhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            44555555566667777666666666666666643

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.16  E-value=0.12  Score=58.92  Aligned_cols=128  Identities=13%  Similarity=0.133  Sum_probs=64.0

Q ss_pred             HHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhh
Q 011909          155 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  234 (475)
Q Consensus       155 ~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkE  234 (475)
                      .+.+.|+.+.+..--+-..|..+|--++-.|..-..+++.+....+....+-..|.+++-++.+++..|--||..|=++=
T Consensus       437 ak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql  516 (1118)
T KOG1029|consen  437 AKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL  516 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            33444444444433333444444444444444445555555555555566666666666666666666655555541110


Q ss_pred             -------------h-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909          235 -------------S-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ  282 (475)
Q Consensus       235 -------------I-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqse  282 (475)
                                   . .|+.-.......+..++.++.+|+.+..+-..+|..+..++++++..
T Consensus       517 kq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~  578 (1118)
T KOG1029|consen  517 KQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKED  578 (1118)
T ss_pred             HHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence                         1 23333333334444555555555555555555555555555555443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.15  E-value=0.96  Score=53.82  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=17.2

Q ss_pred             CCceeeccCCCccchhhhhhcccc
Q 011909          410 SGEIVQIPLDDKEVQDLELQVVES  433 (475)
Q Consensus       410 ~~eiv~~~ld~~~~~~~~~q~~~~  433 (475)
                      -|----|+||-+..|.-.++++-.
T Consensus       666 LgraTFi~LDki~~~~~~l~~i~t  689 (1293)
T KOG0996|consen  666 LGRATFIILDKIKDHQKKLAPITT  689 (1293)
T ss_pred             CCceeEEehHhhhhhhhccCCCCC
Confidence            455567899999887777777443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.14  E-value=0.24  Score=54.87  Aligned_cols=65  Identities=15%  Similarity=0.214  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          142 QNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES  206 (475)
Q Consensus       142 d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee  206 (475)
                      -...+-++.+.++..+..++.-+....++...+...|..|+.||..++.+...|..+...|++..
T Consensus       260 ~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I  324 (581)
T KOG0995|consen  260 KEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI  324 (581)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445556667777788888888877788777888888888887777777666666666665543

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.14  E-value=0.72  Score=52.22  Aligned_cols=169  Identities=18%  Similarity=0.242  Sum_probs=81.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909          109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW  188 (475)
Q Consensus       109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~  188 (475)
                      .+.++.|.+|...+.........-.....+|..++...-=+-+.+=.....|...+..-.|.-....-.++.++..|...
T Consensus       446 q~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~  525 (786)
T PF05483_consen  446 QIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNS  525 (786)
T ss_pred             HhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            34556666666666655555554444555555554443333333334444555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HHhhh-hhhhhhh-chHHHHhhhHHHHHHHHHHHHH
Q 011909          189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLL---------EADKD-SWTQMES-VSKETIAGLSVDITQLRMQVVE  257 (475)
Q Consensus       189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L---------kaERD-~WLkkEI-sLke~ISsl~~EiksLqeEVke  257 (475)
                      ......+..+++.|...+..|+-.+.++-.++..-         +.+-+ .-+--|+ .....+..+...+..|+++|..
T Consensus       526 k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~~LrKqvEn  605 (786)
T PF05483_consen  526 KKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCNNLRKQVEN  605 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            55555666666666655555554444443333322         11111 0011222 3333444444445555555554


Q ss_pred             hHHHHHHHHHHHHHHHHHHH
Q 011909          258 LEESRNNLLQENRQLKENVS  277 (475)
Q Consensus       258 LEesr~eL~kEIqqLReqLd  277 (475)
                      -......|..++..|+.++.
T Consensus       606 k~K~ieeLqqeNk~LKKk~~  625 (786)
T PF05483_consen  606 KNKNIEELQQENKALKKKIT  625 (786)
T ss_pred             HHhHHHHHHHHHHHHHHHHH
Confidence            44444445555544444444

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.14  E-value=0.41  Score=49.37  Aligned_cols=70  Identities=24%  Similarity=0.300  Sum_probs=37.5

Q ss_pred             HHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q 011909           93 TVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN  162 (475)
Q Consensus        93 ti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~  162 (475)
                      -+..|+...+-|+.+-..+...+..+..+-+.+..++.-+-+.+..+..+++..+..+..+-.+-.++..
T Consensus        14 K~~~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~   83 (294)
T COG1340          14 KRKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINA   83 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3335555556666666666666666655555555555555555555555555555554444444443333

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=97.09  E-value=0.45  Score=49.06  Aligned_cols=103  Identities=18%  Similarity=0.300  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 011909          114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA  193 (475)
Q Consensus       114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla  193 (475)
                      .+.+|...+..+..+-       ..|..+...+..+.-.+-.+++++.....++...+..+.+++.+|+..-+.+..++.
T Consensus        14 K~~~lk~~~~e~~ekR-------~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~   86 (294)
T COG1340          14 KRKQLKEEIEELKEKR-------DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQ   86 (294)
T ss_pred             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444333       445555555555555666677888888888888888999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHH---HHHHHhHHHHHHHH
Q 011909          194 ALEQKISQLRDESAAL---NMKRASLEERLKLL  223 (475)
Q Consensus       194 ~L~peiekL~~Ee~~L---kqkLasLEeKl~~L  223 (475)
                      .+-..|..+....+..   ...+..++..++.|
T Consensus        87 eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~L  119 (294)
T COG1340          87 ELRKEYRELKEKRNEFNLGGRSIKSLEREIERL  119 (294)
T ss_pred             HHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHH
Confidence            8888888888887744   23344555555555

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.05  E-value=0.061  Score=49.63  Aligned_cols=123  Identities=20%  Similarity=0.349  Sum_probs=58.8

Q ss_pred             hhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHH
Q 011909           97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM  176 (475)
Q Consensus        97 l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee  176 (475)
                      |+-|.|.-+-+=..++..+++|..++....+++..|...+.+|+.+.+.+-.....+...+.+-......          
T Consensus         5 lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----------   74 (143)
T PF12718_consen    5 LKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----------   74 (143)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----------
Confidence            4444455555555556666666666666666666655555555555554444443333333332222111          


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 011909          177 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW  230 (475)
Q Consensus       177 ~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~W  230 (475)
                       ..+|...|.....++......+............+...++-++..|..+|+.|
T Consensus        75 -~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~  127 (143)
T PF12718_consen   75 -AEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQW  127 (143)
T ss_pred             -HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHH
Confidence             11344444444444444444444444444444444444444444454455554

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=97.05  E-value=0.53  Score=51.38  Aligned_cols=247  Identities=15%  Similarity=0.201  Sum_probs=152.7

Q ss_pred             HHHhhhcchhhh---hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011909           93 TVKHLRNERESH---IQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ  169 (475)
Q Consensus        93 ti~~l~~e~~~~---~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Q  169 (475)
                      -|-.|+++|+-.   ||.---+-..|+.|++.-..++..+..++...++++.....|.-+...+...|..-++.+.+...
T Consensus       272 ~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~  351 (622)
T COG5185         272 DIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQS  351 (622)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            456677777543   44444566778888888889999999999999999999999999999999999988888888888


Q ss_pred             HhhhhHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHhhhhhhhh--
Q 011909          170 REGGLEMNIAN----------LQSEKEFWLQKEAALEQKISQLRDESAALNM----KRASLEERLKLLEADKDSWTQM--  233 (475)
Q Consensus       170 kea~Lee~I~q----------Lq~EI~~~~qEla~L~peiekL~~Ee~~Lkq----kLasLEeKl~~LkaERD~WLkk--  233 (475)
                      ++..|..+|..          .-.|......+|..|.++..+|......-+.    ...+++.+++.+..=++.....  
T Consensus       352 ~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~  431 (622)
T COG5185         352 NIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRS  431 (622)
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            88888877654          3456667788999999999999887654432    4557777777774433322111  


Q ss_pred             -------------------hh--chHHHHhhhHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909          234 -------------------ES--VSKETIAGLSVDIT-QLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  291 (475)
Q Consensus       234 -------------------EI--sLke~ISsl~~Eik-sLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eea  291 (475)
                                         ++  .++..|.....++. ..+..++.-+.....|.+.+..++.-+.++.+.+..++.+.+
T Consensus       432 ~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~  511 (622)
T COG5185         432 QIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELS  511 (622)
T ss_pred             HHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHH
Confidence                               01  12222222211111 222223322222222344444444444444444333333332


Q ss_pred             hh-------h---hhhhhhchHHHHHHHhHHHHH-H---HHHHHHHHHHHHHHHhhhhhhhh
Q 011909          292 QH-------A---TSEQKDFSTQIEAAGALIDKL-I---TENIELVEKVNDLSVKLDRQSVA  339 (475)
Q Consensus       292 l~-------e---~eEn~~Ls~E~E~l~s~vekL-~---~enq~LeEe~neL~~~l~~~~~~  339 (475)
                      .+       .   -+|......|+|.+-..+.+| .   ..--++++.++...++||+.-++
T Consensus       512 ~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ld~~~~~  573 (622)
T COG5185         512 EANSKFELSKEENERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIKLDELKVD  573 (622)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhhHHHHHHH
Confidence            22       1   235566677787777777766 2   22335667788888888776554

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=97.02  E-value=0.8  Score=50.69  Aligned_cols=157  Identities=13%  Similarity=0.190  Sum_probs=97.3

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHH
Q 011909          174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLR  252 (475)
Q Consensus       174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLq  252 (475)
                      ++.+|..++..+.....-+..+  ++......+..+..+++.+-..+..-...|.. +.+.. .+...|......+..|.
T Consensus       254 i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~-vek~~~~l~~~l~~~~e~~~~l~  330 (569)
T PRK04778        254 IEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKY-VEKNSDTLPDFLEHAKEQNKELK  330 (569)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHH
Confidence            5666666777666666656555  55566666666666666666666655666666 55555 88888888888999999


Q ss_pred             HHHHHhHHH----------HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh------hhhhhhchHHHHHHHhHHHHHH
Q 011909          253 MQVVELEES----------RNNLLQENRQLKENVSSLRSQLSSDESKKLQHA------TSEQKDFSTQIEAAGALIDKLI  316 (475)
Q Consensus       253 eEVkeLEes----------r~eL~kEIqqLReqLdelqseiqsLE~Eeal~e------~eEn~~Ls~E~E~l~s~vekL~  316 (475)
                      .++..+..+          ...+.+++..+...+......+...........      .+.-..+..+...+...+..|.
T Consensus       331 ~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lr  410 (569)
T PRK04778        331 EEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLR  410 (569)
T ss_pred             HHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999988888          666666666666666655444443222211111      1234445555555555666665


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 011909          317 TENIELVEKVNDLSVKL  333 (475)
Q Consensus       317 ~enq~LeEe~neL~~~l  333 (475)
                      ..-......+..++.+|
T Consensus       411 k~E~eAr~kL~~~~~~L  427 (569)
T PRK04778        411 KDELEAREKLERYRNKL  427 (569)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555555555544

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=97.00  E-value=1.1  Score=52.35  Aligned_cols=120  Identities=15%  Similarity=0.162  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH---------------HHHHhhhhHHHHH
Q 011909          115 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL---------------HIQREGGLEMNIA  179 (475)
Q Consensus       115 IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s---------------~~Qkea~Lee~I~  179 (475)
                      ..++.+.+++++..-+..++.-.-|+.+...+-.+.-.++..+.=|+.++..               .++..+.|.+.+.
T Consensus       306 mad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalV  385 (1243)
T KOG0971|consen  306 MADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALV  385 (1243)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHH
Confidence            3444444444443333333333444444444444444444444444333221               2344455666666


Q ss_pred             hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhh
Q 011909          180 NLQSEKEFWLQKE-------AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  234 (475)
Q Consensus       180 qLq~EI~~~~qEl-------a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkE  234 (475)
                      +|+.-.+.-.+.-       .....+++.|.....-|..+++.+|.+|.-||.-=|.-|-.|
T Consensus       386 rLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE  447 (1243)
T KOG0971|consen  386 RLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAE  447 (1243)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH
Confidence            6665444433333       333444444444444455566666666666665555544333

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=97.00  E-value=0.24  Score=48.14  Aligned_cols=61  Identities=21%  Similarity=0.276  Sum_probs=40.8

Q ss_pred             HHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011909           92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEAT  152 (475)
Q Consensus        92 eti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~  152 (475)
                      +.|+.|+++..-.-.++.-.++.+.++..++..+..-+..+..+...|+.+...+-+.+..
T Consensus        27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~   87 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS   87 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777666667777777777777777777766666666666666666665555544

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.99  E-value=0.00017  Score=82.75  Aligned_cols=182  Identities=19%  Similarity=0.286  Sum_probs=0.0

Q ss_pred             hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHH
Q 011909          103 SHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ  182 (475)
Q Consensus       103 ~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq  182 (475)
                      .+++.|+.+...-+...+.+..+...+..++..+..|+.++..+-.....+...+..+...........-.++.+|..|+
T Consensus       114 ~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~  193 (859)
T PF01576_consen  114 ANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQ  193 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Confidence            34444554444444444444444444444333333333333333333333333333333333333333334555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh---------------chHHHHhhhHHH
Q 011909          183 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES---------------VSKETIAGLSVD  247 (475)
Q Consensus       183 ~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI---------------sLke~ISsl~~E  247 (475)
                      ..++.....+..+.....+|..++..|...+...+.++..|...+..| ..++               .|...+..+..+
T Consensus       194 ~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L-~~qLeelk~~leeEtr~k~~L~~~l~~le~e  272 (859)
T PF01576_consen  194 AKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSL-ESQLEELKRQLEEETRAKQALEKQLRQLEHE  272 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHhHhhhhhhhHHHHHHHHHH
Confidence            555555666666666666777777777777777776666664444442 2222               344455566666


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          248 ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       248 iksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      +..|+.++.+-..++..|...+..+...|..|+..+..
T Consensus       273 ~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~  310 (859)
T PF01576_consen  273 LEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEE  310 (859)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            66666666666666666666666666666666555444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.99  E-value=0.81  Score=50.31  Aligned_cols=117  Identities=13%  Similarity=0.143  Sum_probs=55.1

Q ss_pred             CCCCcchhhhHHHHHHHHHHH--HHHHHHHHHHHhhhcchhhhhH---HHhhHHHHHHHH------------HHHH----
Q 011909           64 QSNGAESANLAEAERQHLLQR--EAMAILEETVKHLRNERESHIQ---KEATLEGTVQQL------------QNEC----  122 (475)
Q Consensus        64 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~eeti~~l~~e~~~~~~---~e~~l~e~IkqL------------q~El----  122 (475)
                      .+.-++..+.+|.+|...+.-  .|-.+.++.=.+|+.-.....+   ---+.+--++.+            +.++    
T Consensus        43 l~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~  122 (522)
T PF05701_consen   43 LAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAR  122 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHH
Confidence            344466777888888877753  3434555554455543322211   111111122222            2222    


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh
Q 011909          123 ---DLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN  180 (475)
Q Consensus       123 ---~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q  180 (475)
                         .....+|.....+..+++.++...+..+.....+..+.......+..+-..|-.+|..
T Consensus       123 ~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~  183 (522)
T PF05701_consen  123 EQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIA  183 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2222445555555666666666666555554444444444444444444443333333

Several sequences in this family are described as being myosin heavy chain-like.

>PRK11281 hypothetical protein; Provisional

Probab=96.99  E-value=0.093  Score=62.36  Aligned_cols=37  Identities=14%  Similarity=0.206  Sum_probs=30.3

Q ss_pred             hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          295 TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV  331 (475)
Q Consensus       295 ~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~  331 (475)
                      .+.|+.|+.++..++..++.+.+++.+-+.-+..+.-
T Consensus       284 ~~~N~~Ls~~L~~~t~~~~~l~~~~~~~~~~l~~~~q  320 (1113)
T PRK11281        284 LEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDRLTQ  320 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999999999988777776655544

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=96.98  E-value=0.2  Score=48.69  Aligned_cols=136  Identities=20%  Similarity=0.225  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHH
Q 011909          113 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE  192 (475)
Q Consensus       113 e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEl  192 (475)
                      ..|+.|.+++...+............+..++..+..-.+.++..+..|+.........              .    ..+
T Consensus        27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kd--------------K----~~L   88 (201)
T PF13851_consen   27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKD--------------K----QSL   88 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------H----HHH
Confidence            4577777777777777777777777777777777777777777776666665443333              2    223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 011909          193 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLL  266 (475)
Q Consensus       193 a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~  266 (475)
                      ..++.++..+..+-..|+..-..|+.+...|..|||.|..+-. .+...-..-...+.-|...+..|........
T Consensus        89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~ke  163 (201)
T PF13851_consen   89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKE  163 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444455555555666777655544 3333333333333344444444444433333

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.97  E-value=0.57  Score=52.38  Aligned_cols=187  Identities=19%  Similarity=0.154  Sum_probs=96.7

Q ss_pred             hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909          102 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEE----------------TIQQLQRQNDLRMQKEATLEETIKQLRNQND  165 (475)
Q Consensus       102 ~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~e----------------tikQLe~d~~~~LQkkA~lE~kIKdLe~~~~  165 (475)
                      .--++-.-.++-.|+.|...+..+.+.+..-..                .-..|.++....-.+.-.++.+|..|+..+.
T Consensus       134 ~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~  213 (629)
T KOG0963|consen  134 NNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIE  213 (629)
T ss_pred             HHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555666677777776666544433222                1122222222333333444455555544444


Q ss_pred             HHHHHhhhhHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------HHhhhhh
Q 011909          166 LHIQREGGLEMN----IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-----------EADKDSW  230 (475)
Q Consensus       166 s~~Qkea~Lee~----I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L-----------kaERD~W  230 (475)
                      .+.-....+..+    ..-...++.....+++.-...+..|..+...|..+++..-.....=           -.-+|.-
T Consensus       214 ~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~  293 (629)
T KOG0963|consen  214 DTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSE  293 (629)
T ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHH
Confidence            444333333333    5556666666677777777777777777777776666433332211           1112221


Q ss_pred             hhhhh--chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011909          231 TQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKK  290 (475)
Q Consensus       231 LkkEI--sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Ee  290 (475)
                      + ..+  +++..-+++..++.....+|..|+........++..++.+|... +....+..+.
T Consensus       294 i-~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~EL  353 (629)
T KOG0963|consen  294 I-AQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKEL  353 (629)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHH
Confidence            1 111  33333355555666666677777777777777777777777654 4444444444

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.90  E-value=0.63  Score=50.15  Aligned_cols=174  Identities=16%  Similarity=0.119  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHH-------
Q 011909          112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSE-------  184 (475)
Q Consensus       112 ~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~E-------  184 (475)
                      ++.-.+|+.+|..++.++..+...+.+...++...-+.++.++..|..|+...   .+++..|...|.-++..       
T Consensus        58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~---r~qr~~La~~L~A~~r~g~~p~~~  134 (420)
T COG4942          58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE---REQRRRLAEQLAALQRSGRNPPPA  134 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhccCCCCch
Confidence            33344444444444444444444455555555555555555555555555554   34444555555555542       


Q ss_pred             --HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHH
Q 011909          185 --KEFWL-QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEES  261 (475)
Q Consensus       185 --I~~~~-qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEes  261 (475)
                        +.... +.-..+.--|.   .-+-...+.+..+...+..|.+.|..-..+.-.++..++.+..+...|..-+.+-..-
T Consensus       135 ll~~~eda~~~~R~ai~~~---~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~  211 (420)
T COG4942         135 LLVSPEDAQRSVRLAIYYG---ALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKT  211 (420)
T ss_pred             hhcChhhhhHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              00000 00111211122   2223344444555555555544333322222244445555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909          262 RNNLLQENRQLKENVSSLRSQLSSDESKKL  291 (475)
Q Consensus       262 r~eL~kEIqqLReqLdelqseiqsLE~Eea  291 (475)
                      ...+..++...+.++.+++..=..|+.+++
T Consensus       212 ~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ia  241 (420)
T COG4942         212 LAQLNSELSADQKKLEELRANESRLKNEIA  241 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            555555555555555555444444444443

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.88  E-value=0.076  Score=49.22  Aligned_cols=86  Identities=24%  Similarity=0.247  Sum_probs=50.8

Q ss_pred             hhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhH
Q 011909          233 MES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGAL  311 (475)
Q Consensus       233 kEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~  311 (475)
                      .+| .|+..|..+...+..|..++..+-+.+..|.++.+..+.++..+.+...++..-.-..+.+    .....+.+...
T Consensus        52 ~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~e----k~q~~e~~~~~  127 (140)
T PF10473_consen   52 AEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQE----KVQLKEESKSA  127 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence            555 6666666666666667777777777777777777777777777666655544433322211    23334455555


Q ss_pred             HHHHHHHHHHH
Q 011909          312 IDKLITENIEL  322 (475)
Q Consensus       312 vekL~~enq~L  322 (475)
                      |+.|+.+..+|
T Consensus       128 ve~L~~ql~~L  138 (140)
T PF10473_consen  128 VEMLQKQLKEL  138 (140)
T ss_pred             HHHHHHHHhhh
Confidence            66666554443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=96.85  E-value=0.00026  Score=81.23  Aligned_cols=191  Identities=19%  Similarity=0.256  Sum_probs=0.0

Q ss_pred             HHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011909          148 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA-LEQKISQLRDESAALNMKRASLEERLKLLEAD  226 (475)
Q Consensus       148 QkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~-L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE  226 (475)
                      .....++..+..|+...+........++.+|..+..++..|..+... ....++.|......+..++..++..+..+.+.
T Consensus       264 ~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~  343 (859)
T PF01576_consen  264 KQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAK  343 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555666666666667777888888888999999888855 44446677777777777777777777777666


Q ss_pred             hhhh------hhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh-----
Q 011909          227 KDSW------TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA-----  294 (475)
Q Consensus       227 RD~W------LkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e-----  294 (475)
                      .+.|      |..|+ ++...+......+..|.+....++.....|......+...++.+......+..+++...     
T Consensus       344 ~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee  423 (859)
T PF01576_consen  344 VSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEE  423 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHH
Confidence            6665      55666 66666665555555555555555555555544444444444444444333333332221     


Q ss_pred             --------hhhhhhchHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909          295 --------TSEQKDFSTQI-------EAAGALIDKLITENIELVEKVNDLSVKLDRQSV  338 (475)
Q Consensus       295 --------~eEn~~Ls~E~-------E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~  338 (475)
                              -.+|+.|..++       .-.+..|..|...+++|+.++.+|...|+-...
T Consensus       424 ~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~  482 (859)
T PF01576_consen  424 LQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAED  482 (859)
T ss_dssp             -----------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    01444444444       444445666777788888888887776654433

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=1.1  Score=49.84  Aligned_cols=40  Identities=20%  Similarity=0.322  Sum_probs=22.4

Q ss_pred             hhhhchHHHHHHHhHHHHH-----HHHHHHHHHHHHHHHHhhhhhh
Q 011909          297 EQKDFSTQIEAAGALIDKL-----ITENIELVEKVNDLSVKLDRQS  337 (475)
Q Consensus       297 En~~Ls~E~E~l~s~vekL-----~~enq~LeEe~neL~~~l~~~~  337 (475)
                      |++||.-+++.+.+.++..     +++ .||+|-+--|...-+|.+
T Consensus       202 eikRleEe~elln~q~ee~~~Lk~IAe-kQlEEALeTlq~EReqk~  246 (772)
T KOG0999|consen  202 EIKRLEEETELLNSQLEEAIRLKEIAE-KQLEEALETLQQEREQKN  246 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Confidence            5666666666666655543     333 367776655555444443

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.83  E-value=0.62  Score=53.93  Aligned_cols=142  Identities=15%  Similarity=0.215  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHH---HHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          137 QQLQRQNDLRMQKEATLEETI---KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR  213 (475)
Q Consensus       137 kQLe~d~~~~LQkkA~lE~kI---KdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkL  213 (475)
                      .+|+.+...........|--.   .+.+........+=..+.+.+.+|..+....+++.+.+..+++.-..-........
T Consensus       389 eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~  468 (980)
T KOG0980|consen  389 EQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEEN  468 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            345554444444444444433   55555555555555556666777777777777777777777766666666666677


Q ss_pred             HhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909          214 ASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS  278 (475)
Q Consensus       214 asLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLde  278 (475)
                      ..|...+..++.+++.|..+--+....+.++..+...|..+++.|+.....+...-.....+++.
T Consensus       469 ~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~  533 (980)
T KOG0980|consen  469 TNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLED  533 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            77777777778888888776666777777777777777777777777655554444444444443

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=96.82  E-value=0.68  Score=55.32  Aligned_cols=37  Identities=5%  Similarity=0.143  Sum_probs=28.6

Q ss_pred             hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          295 TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV  331 (475)
Q Consensus       295 ~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~  331 (475)
                      .+.|+.|+.++...+..++.+.+++.+-+.-+..+.-
T Consensus       264 ~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q  300 (1109)
T PRK10929        264 FKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQ  300 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5679999999999999988888888776665544443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=96.80  E-value=1  Score=48.65  Aligned_cols=31  Identities=10%  Similarity=0.266  Sum_probs=18.9

Q ss_pred             hchHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909          300 DFSTQIEAAGALIDKLITENIELVEKVNDLS  330 (475)
Q Consensus       300 ~Ls~E~E~l~s~vekL~~enq~LeEe~neL~  330 (475)
                      .|..++..-...++.|.+.-..|..++..+.
T Consensus       214 ~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e  244 (420)
T COG4942         214 QLNSELSADQKKLEELRANESRLKNEIASAE  244 (420)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4455555555666666666666666666665

>PRK09039 hypothetical protein; Validated

Probab=96.79  E-value=0.3  Score=50.98  Aligned_cols=123  Identities=18%  Similarity=0.200  Sum_probs=74.6

Q ss_pred             HHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH
Q 011909           89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI  168 (475)
Q Consensus        89 ~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~  168 (475)
                      ||.++|..++.+.+-       |+..|.+|-+-+..-......|+..+.+++.++..+...++.++.-+....       
T Consensus        43 fLs~~i~~~~~eL~~-------L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~-------  108 (343)
T PRK09039         43 FLSREISGKDSALDR-------LNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELA-------  108 (343)
T ss_pred             HHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------
Confidence            556666665555432       333455555555555566666677777777777766666666665544321       


Q ss_pred             HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011909          169 QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA  225 (475)
Q Consensus       169 Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lka  225 (475)
                      .....++.++..++.+.......-+..-|++..|+.+.++|+.+++.+++.|..++.
T Consensus       109 ~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~  165 (343)
T PRK09039        109 GAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEK  165 (343)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112344555666666666666666667777777777777777777777766665543

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=96.79  E-value=1.2  Score=49.05  Aligned_cols=144  Identities=17%  Similarity=0.268  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909          140 QRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM---NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  216 (475)
Q Consensus       140 e~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee---~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL  216 (475)
                      +.++..|-......+.++..|.........-+..|..   .|..|+.++..+..  ..+.... ........+...+..+
T Consensus       210 ~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~--~~l~~~~-~~~~~~~~~~~~l~s~  286 (522)
T PF05701_consen  210 EQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKE--SKLEEEA-EAKEKSSELQSSLASA  286 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhH-HhhhhhhhHHHHHHHH
Confidence            3455555556666677777777766444443333332   23333333333222  0111100 1112222222223333


Q ss_pred             HHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909          217 EERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDE  287 (475)
Q Consensus       217 EeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE  287 (475)
                      ...+...+..=+. ++.|+ .|...+.++..++...+.++..+..........+..|...|..+++++..+.
T Consensus       287 ~~ELe~ak~~L~~-~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~  357 (522)
T PF05701_consen  287 KKELEEAKKELEK-AKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAK  357 (522)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence            3333333222222 33344 5555555555555555555555555555555555555555555555554433

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.9  Score=52.32  Aligned_cols=72  Identities=15%  Similarity=0.187  Sum_probs=41.7

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHH
Q 011909          108 EATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA  179 (475)
Q Consensus       108 e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~  179 (475)
                      +.+.++...+++.-+..|+--+..+.-++.+++.....+-.....++.++.++.+.+..+...-..|.-++.
T Consensus       645 ~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg  716 (970)
T KOG0946|consen  645 TQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG  716 (970)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445566666677666666666666666666666655555555555555555555555544444444444444

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=96.73  E-value=0.0016  Score=73.27  Aligned_cols=141  Identities=23%  Similarity=0.255  Sum_probs=0.0

Q ss_pred             HHHHHHHhhhcchhhhhH---HHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Q 011909           89 ILEETVKHLRNERESHIQ---KEATLEGTVQQLQNECDLY---KEKVATLEETIQQLQRQNDLRMQKEAT----------  152 (475)
Q Consensus        89 ~~eeti~~l~~e~~~~~~---~e~~l~e~IkqLq~El~~l---k~kl~~L~etikQLe~d~~~~LQkkA~----------  152 (475)
                      -+|.+.++|..|+.-+.+   .--+|++....|+..+..+   ..++..++..+..|+.++..|..-...          
T Consensus       261 ~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~  340 (722)
T PF05557_consen  261 ELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPED  340 (722)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence            345555555555543322   3346777777777777743   377777777888888888887542222          


Q ss_pred             HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909          153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  229 (475)
Q Consensus       153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~  229 (475)
                      +--.|..|+...-....+...+...+..++..+.....+...+.+++..+......++.....|+.++..+..|||.
T Consensus       341 l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~  417 (722)
T PF05557_consen  341 LARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDY  417 (722)
T ss_dssp             -----------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11223333333333333333344444444444444444444444444444444333333333333333333333333

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=96.73  E-value=1.6  Score=49.68  Aligned_cols=187  Identities=15%  Similarity=0.184  Sum_probs=124.2

Q ss_pred             HHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHh
Q 011909           92 ETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQRE  171 (475)
Q Consensus        92 eti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qke  171 (475)
                      -+|..|+.....-..++--.-..+.+|..++..-+-+-..|......|..++....|....+-..++.++..+..+..++
T Consensus       450 kev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qe  529 (786)
T PF05483_consen  450 KEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQEDINNSKKQE  529 (786)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            34444444444445555556677888888888766666666667788888888888888888888888888888888888


Q ss_pred             hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------------HHhhhhhhhhhh-c
Q 011909          172 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--------------EADKDSWTQMES-V  236 (475)
Q Consensus       172 a~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L--------------kaERD~WLkkEI-s  236 (475)
                      ..+-.+|..|.......--++..+..++.+-.+   .++-++...+...+.+              ....+ .|++.| .
T Consensus       530 e~~~kqie~Lee~~~~Lrneles~~eel~~k~~---Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~-~LrKqvEn  605 (786)
T PF05483_consen  530 EKMLKQIENLEETNTQLRNELESVKEELKQKGE---EVKCKLDKSEENARSIECEILKKEKQMKILENKCN-NLRKQVEN  605 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHH
Confidence            887777777777777765555555554444333   4444444444443333              22222 266666 6


Q ss_pred             hHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909          237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ  282 (475)
Q Consensus       237 Lke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqse  282 (475)
                      ....|..+..++..|++++..--...+.+.-.|..|+..+..+...
T Consensus       606 k~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~  651 (786)
T PF05483_consen  606 KNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKK  651 (786)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            6667777788888888887776666666666666666666655443

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=96.68  E-value=0.75  Score=50.92  Aligned_cols=42  Identities=19%  Similarity=0.270  Sum_probs=16.6

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS  277 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd  277 (475)
                      .+...+..-...+..+..++.+.......+..+...|.+...
T Consensus       459 ~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~  500 (569)
T PRK04778        459 ALAEELEEKPINMEAVNRLLEEATEDVETLEEETEELVENAT  500 (569)
T ss_pred             HHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333444444444444444444433333

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.60  E-value=1.8  Score=48.62  Aligned_cols=77  Identities=14%  Similarity=0.208  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 011909          114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA  193 (475)
Q Consensus       114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla  193 (475)
                      .+..|+.++..+..+.+.+..++.+++.+.+.+-++...++..++.   ......+.+..++.++..++.+......++.
T Consensus       210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~---~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~  286 (650)
T TIGR03185       210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS---EGGDLFEEREQLERQLKEIEAARKANRAQLR  286 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444443333333332222   3334444455666666666666665555553

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=96.55  E-value=0.00058  Score=76.69  Aligned_cols=30  Identities=27%  Similarity=0.536  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909          130 ATLEETIQQLQRQNDLRMQKEATLEETIKQ  159 (475)
Q Consensus       130 ~~L~etikQLe~d~~~~LQkkA~lE~kIKd  159 (475)
                      ..+....+.|+.++..+++..+.+|..++.
T Consensus       328 ~~lk~qvk~Lee~N~~l~e~~~~LEeel~~  357 (713)
T PF05622_consen  328 EDLKRQVKELEEDNAVLLETKAMLEEELKK  357 (713)
T ss_dssp             ------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444566666777777777777766655

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.49  E-value=2.1  Score=48.16  Aligned_cols=125  Identities=19%  Similarity=0.158  Sum_probs=70.6

Q ss_pred             HHHHHHHHhhhhHHHHHhhh-----------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909          154 EETIKQLRNQNDLHIQREGG-----------LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL  222 (475)
Q Consensus       154 E~kIKdLe~~~~s~~Qkea~-----------Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~  222 (475)
                      +.-|++|+.-++...++...           |.+++..|+.....+..+-.....++..++.+-..+...+..-++....
T Consensus       393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~q  472 (594)
T PF05667_consen  393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQ  472 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555555555444           4444445555444444444455555556666666666666666666666


Q ss_pred             HHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHH
Q 011909          223 LEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELE---ESRNNLLQENRQLKENVSSL  279 (475)
Q Consensus       223 LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLE---esr~eL~kEIqqLReqLdel  279 (475)
                      |+.+... +.+.++-..++.+.-..++++++|-.+..   .....+.++|..+..+|+..
T Consensus       473 L~~e~e~-~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~Rt  531 (594)
T PF05667_consen  473 LVKELEK-LPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRT  531 (594)
T ss_pred             HHHHHHh-CCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            6666655 44446555555555555555555544433   35566777777777766643

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.48  E-value=0.51  Score=49.21  Aligned_cols=140  Identities=21%  Similarity=0.254  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          130 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL  209 (475)
Q Consensus       130 ~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~L  209 (475)
                      ....+.-+.|..+...+-|+...++..|+=|+..+....---......         -+..+-+.+..+++++.....+|
T Consensus        75 ~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~---------~~~~ere~lV~qLEk~~~q~~qL  145 (319)
T PF09789_consen   75 SESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGAR---------HFPHEREDLVEQLEKLREQIEQL  145 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhcccccc---------ccchHHHHHHHHHHHHHHHHHHH
Confidence            333444456666666666666666666666665543322111110000         01145566666677777777777


Q ss_pred             HHHHHhHHHHHHHHHHhhhhh------hhhhh--chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          210 NMKRASLEERLKLLEADKDSW------TQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL  279 (475)
Q Consensus       210 kqkLasLEeKl~~LkaERD~W------LkkEI--sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel  279 (475)
                      ..-+.++-....-|..|||.|      |..|+  -|...-. .-.+|.+|-.+-.-|.+...++..|...++..|.+.
T Consensus       146 e~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~-rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KY  222 (319)
T PF09789_consen  146 ERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDEN-RIVDIDALIMENRYLKERLKQLQEEKELLKQTINKY  222 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777776      33333  1111111 111344444444444444444444444444444443

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=96.48  E-value=2.1  Score=48.08  Aligned_cols=229  Identities=19%  Similarity=0.177  Sum_probs=114.4

Q ss_pred             HHhhHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909          107 KEATLEGTVQQLQNECDLYK---------------------------EKVATLEETIQQLQRQNDLRMQKEATLEETIKQ  159 (475)
Q Consensus       107 ~e~~l~e~IkqLq~El~~lk---------------------------~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKd  159 (475)
                      |.-..-..|+.+|.+++.++                           ...+-+..+.++...+++.+......++..+.+
T Consensus        60 k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaPDP~pll~sa~~~l~k~~~~~~e~~~lk~~lee~~~el~~  139 (629)
T KOG0963|consen   60 KLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAPDPVPLLASAAELLNKQQKASEENEELKEELEEVNNELAD  139 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCCCCchHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence            33445567888888888776                           222333333344455566666666666666655


Q ss_pred             HHhhhhHHHHHhhhhHHHHHhHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhh
Q 011909          160 LRNQNDLHIQREGGLEMNIANLQSEKE----FWLQKE-AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  234 (475)
Q Consensus       160 Le~~~~s~~Qkea~Lee~I~qLq~EI~----~~~qEl-a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkE  234 (475)
                      ++.....-.--+..+.+.-..+...|.    ....++ .....+..-|.+++..+..++..++.++..|+..--. .+.+
T Consensus       140 ~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~-t~~e  218 (629)
T KOG0963|consen  140 LKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIED-TQNE  218 (629)
T ss_pred             hhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhH
Confidence            554433222222222222222222222    212222 2333444555666666666666666666666332222 2222


Q ss_pred             h-ch----HHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----hh-hhhhhhhh-hhhhhch
Q 011909          235 S-VS----KETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS-----DE-SKKLQHAT-SEQKDFS  302 (475)
Q Consensus       235 I-sL----ke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs-----LE-~Eeal~e~-eEn~~Ls  302 (475)
                      . .+    .+.+.....++.-+-.++.........+..|+..|+.++....+....     ++ ....+|.. .++..|+
T Consensus       219 l~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~  298 (629)
T KOG0963|consen  219 LFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLS  298 (629)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHH
Confidence            2 22    233667777777777777777777777777777777777754333222     11 11223332 2555565


Q ss_pred             HHHHHHHh-----------HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          303 TQIEAAGA-----------LIDKLITENIELVEKVNDLSVKLDRQ  336 (475)
Q Consensus       303 ~E~E~l~s-----------~vekL~~enq~LeEe~neL~~~l~~~  336 (475)
                      ..++++.+           .+..|-.++-.....+.+|..+|+-+
T Consensus       299 ~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~  343 (629)
T KOG0963|consen  299 NDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR  343 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            55555443           33334344444444555555555443

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.44  E-value=0.67  Score=54.25  Aligned_cols=50  Identities=24%  Similarity=0.456  Sum_probs=28.6

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      ..+..+...-..+..++.+..++-..+..+=.|-+.|+..++.+...+..
T Consensus       443 e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~  492 (1200)
T KOG0964|consen  443 ETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSR  492 (1200)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555556666666666666666555555666666555555444

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=96.39  E-value=0.89  Score=54.36  Aligned_cols=104  Identities=13%  Similarity=0.068  Sum_probs=51.5

Q ss_pred             HHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 011909          222 LLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKD  300 (475)
Q Consensus       222 ~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~  300 (475)
                      .|++|+.. +..++ .++..+.+...-..=++.+...+......+..+++.|++.++..+..-..    .+   +++.++
T Consensus       177 ~lqae~~~-l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se----~~---~~~~~~  248 (1109)
T PRK10929        177 ALQAESAA-LKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAE----RA---LESTEL  248 (1109)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHH
Confidence            33444444 44444 44445555554444555555556666666666666666666654333222    11   223333


Q ss_pred             chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909          301 FSTQIEAAGALIDKLITENIELVEKVNDLSVKL  333 (475)
Q Consensus       301 Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l  333 (475)
                      +..+...+...+.++.+.|++|-++++....++
T Consensus       249 ~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~  281 (1109)
T PRK10929        249 LAEQSGDLPKSIVAQFKINRELSQALNQQAQRM  281 (1109)
T ss_pred             hHHhhccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322222233345555666666666666555544

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.38  E-value=1.8  Score=49.91  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=10.8

Q ss_pred             HHHhhhcchhhhhHHHhhHHHHH
Q 011909           93 TVKHLRNERESHIQKEATLEGTV  115 (475)
Q Consensus        93 ti~~l~~e~~~~~~~e~~l~e~I  115 (475)
                      .=|+|+...++..|+|.--.+.|
T Consensus       373 lekqLerQReiE~qrEEerkkei  395 (1118)
T KOG1029|consen  373 LEKQLERQREIERQREEERKKEI  395 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555544433333

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=96.37  E-value=0.77  Score=51.60  Aligned_cols=41  Identities=12%  Similarity=0.103  Sum_probs=25.4

Q ss_pred             hhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909          297 EQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQS  337 (475)
Q Consensus       297 En~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~  337 (475)
                      ++..-+.+.+.+---++.+..-|.+-+...-+|+.-||+-.
T Consensus       268 d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y~  308 (861)
T KOG1899|consen  268 DGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNYD  308 (861)
T ss_pred             cccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhhh
Confidence            45545555556777777777777666666666666555443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=96.34  E-value=1.1  Score=43.45  Aligned_cols=68  Identities=21%  Similarity=0.249  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909          262 RNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL  333 (475)
Q Consensus       262 r~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l  333 (475)
                      +..|...+..+...+......++.|+...-+.    +.-++.++-.-......++.+...|.+++..|..+|
T Consensus       120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~----~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~kl  187 (194)
T PF15619_consen  120 REELQRKLSQLEQKLQEKEKKIQELEKQLELE----NKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKL  187 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666655544332    333444444444555566666666777777776655

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=96.31  E-value=0.54  Score=48.73  Aligned_cols=40  Identities=23%  Similarity=0.287  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHH
Q 011909          116 QQLQNECDLYKEKVATLEETIQQLQRQN---DLRMQKEATLEE  155 (475)
Q Consensus       116 kqLq~El~~lk~kl~~L~etikQLe~d~---~~~LQkkA~lE~  155 (475)
                      +.|...+..++..+......+.||+.+.   ++++|..+....
T Consensus        93 ~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~e  135 (306)
T PF04849_consen   93 QDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDE  135 (306)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhh
Confidence            3445555556666666666666666543   445555554443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>smart00787 Spc7 Spc7 kinetochore protein

Probab=96.31  E-value=0.33  Score=50.25  Aligned_cols=56  Identities=25%  Similarity=0.341  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909          110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  165 (475)
Q Consensus       110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~  165 (475)
                      +++..+..|...++.+......|......+..=...+..+.+.+..++..|+....
T Consensus       141 llegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~  196 (312)
T smart00787      141 LLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLED  196 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            45555555555555555555555555555555555555566666655555555433

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.30  E-value=0.78  Score=42.41  Aligned_cols=43  Identities=19%  Similarity=0.303  Sum_probs=28.9

Q ss_pred             hHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL  279 (475)
Q Consensus       237 Lke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel  279 (475)
                      ....+.........+...|..|+..+..|...+..+..+...+
T Consensus        99 ~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~~~  141 (143)
T PF12718_consen   99 TTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYKEA  141 (143)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            3344555555566777777888888888887777777666544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=96.30  E-value=1.6  Score=46.87  Aligned_cols=177  Identities=19%  Similarity=0.209  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHH-HHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 011909          135 TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHI-QREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES-------  206 (475)
Q Consensus       135 tikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~-Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee-------  206 (475)
                      ...-++.+...+-++....|..+.+|+..+.... .....+..+|..++........++..+...+..+...-       
T Consensus       162 ~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~  241 (498)
T TIGR03007       162 AQRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVL  241 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence            4444555555555566666666666665544211 11123445555555555555555555555555555432       


Q ss_pred             --------HHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHH---------------------HHHHHHHH
Q 011909          207 --------AALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDI---------------------TQLRMQVV  256 (475)
Q Consensus       207 --------~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~Ei---------------------ksLqeEVk  256 (475)
                              ..+..++..++.++..|..-.-. =+-.+ .++.+|..+...+                     ..|...+.
T Consensus       242 ~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~-~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  320 (498)
T TIGR03007       242 LAGSSVANSELDGRIEALEKQLDALRLRYTD-KHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELA  320 (498)
T ss_pred             CcccccCCCchHHHHHHHHHHHHHHHHHhcc-cChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHH
Confidence                    24445555555555554110000 00111 2222222222222                     23444455


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHH
Q 011909          257 ELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLIT  317 (475)
Q Consensus       257 eLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~  317 (475)
                      .++.....+..++..++.++..++.++..+-....     +-.+|.++.+.+....+.+.+
T Consensus       321 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~-----el~~L~Re~~~~~~~Y~~l~~  376 (498)
T TIGR03007       321 EAEAEIASLEARVAELTARIERLESLLRTIPEVEA-----ELTQLNRDYEVNKSNYEQLLT  376 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555555555555544444322222     555666666666666655555

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.24  E-value=3.5  Score=48.08  Aligned_cols=162  Identities=17%  Similarity=0.181  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHH
Q 011909          112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK  191 (475)
Q Consensus       112 ~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qE  191 (475)
                      +..|.+++..+..+.-.+..-+-...+...+...+-...+.+...--+++..+..           +......+-.|..+
T Consensus       357 r~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~-----------~ee~e~~~l~~e~r  425 (980)
T KOG0980|consen  357 RRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVL-----------VEEAENKALAAENR  425 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHhHHHHHHHHHHH
Confidence            3456666666666666555544444444444443333333333333333222211           34556666677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011909          192 EAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENR  270 (475)
Q Consensus       192 la~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIq  270 (475)
                      ...++.+|.+|..+-..+.+|.+....++..-+...+. +..++ .|...|..+..+...+...-.+......++..|..
T Consensus       426 y~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~-~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~  504 (980)
T KOG0980|consen  426 YEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDD-VEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELA  504 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            78888888888888888888888776666544433332 23333 44444444444444433334444444445555555


Q ss_pred             HHHHHHHHHHhhhhh
Q 011909          271 QLKENVSSLRSQLSS  285 (475)
Q Consensus       271 qLReqLdelqseiqs  285 (475)
                      .+..++..++..+..
T Consensus       505 ~l~~e~~~lq~~~~~  519 (980)
T KOG0980|consen  505 LLLIELEELQRTLSN  519 (980)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            555555555444433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=96.18  E-value=0.038  Score=52.80  Aligned_cols=52  Identities=25%  Similarity=0.307  Sum_probs=21.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909          178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  229 (475)
Q Consensus       178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~  229 (475)
                      +..|+.++..+..++.....-++.++++..+|.-.+..++.+++.|+.|.+.
T Consensus       125 ~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~  176 (194)
T PF08614_consen  125 LAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRE  176 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333334444444444444444444444444444443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=96.15  E-value=0.9  Score=42.25  Aligned_cols=66  Identities=23%  Similarity=0.282  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHH
Q 011909          196 EQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESR  262 (475)
Q Consensus       196 ~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr  262 (475)
                      ...+..|..+-..+...+..++..+..|..+|+.|. ++. ..+..|+.+..-+.++..-+..++...
T Consensus        51 k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~-k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek  117 (140)
T PF10473_consen   51 KAEIETLEEELEELTSELNQLELELDTLRSEKENLD-KELQKKQEKVSELESLNSSLENLLQEKEQEK  117 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            333444444444444444555555555556666633 333 555566666666666666666655553

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=96.15  E-value=1.3  Score=50.72  Aligned_cols=174  Identities=14%  Similarity=0.229  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          127 EKVATLEETIQQLQRQN-DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE  205 (475)
Q Consensus       127 ~kl~~L~etikQLe~d~-~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~E  205 (475)
                      .-++.|....+.+..++ ..+-+....++-+++-|+...+...       .+|..++.++......-..|..+|+...+.
T Consensus       536 E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql-------~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~  608 (717)
T PF10168_consen  536 ECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQL-------KELQELQEERKSLRESAEKLAERYEEAKDK  608 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666653 4444555566666666655544322       334555555555444445555666666666


Q ss_pred             HHHHHHHHHhHHHHHHH----H-HHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909          206 SAALNMKRASLEERLKL----L-EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR  280 (475)
Q Consensus       206 e~~LkqkLasLEeKl~~----L-kaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq  280 (475)
                      -..|.+++..+=..+..    | .+||+.               ..++..+..++..+..+..++...++.++.++. .+
T Consensus       609 Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~---------------~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~-~~  672 (717)
T PF10168_consen  609 QEKLMKRVDRVLQLLNSQLPVLSEAEREF---------------KKELERMKDQLQDLKASIEQLKKKLDYQQRQIE-SQ  672 (717)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCCHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence            66666655544222221    0 333332               222333333333333333333333333333333 11


Q ss_pred             hhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909          281 SQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL  333 (475)
Q Consensus       281 seiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l  333 (475)
                      .....  ....        =-..|.+.+.+.|.++..+-.+|+.+++.+..++
T Consensus       673 ~~~~~--~s~~--------L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~  715 (717)
T PF10168_consen  673 KSPKK--KSIV--------LSESQKRTIKEILKQQGEEIDELVKQIKNIKKIV  715 (717)
T ss_pred             ccccC--CCcc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            11100  1111        1235667778888888888888888888887644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=96.08  E-value=2.3  Score=44.49  Aligned_cols=105  Identities=15%  Similarity=0.175  Sum_probs=59.9

Q ss_pred             hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHhhhhhhhhhh-chHHHHhhhH
Q 011909          172 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-----EADKDSWTQMES-VSKETIAGLS  245 (475)
Q Consensus       172 a~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L-----kaERD~WLkkEI-sLke~ISsl~  245 (475)
                      ..|..-+...+..+..+..++..|..++..++...-.|+++++.....-..+     -.+|..|+. ++ .++..+..+.
T Consensus        68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~-qLEk~~~q~~qLe  146 (319)
T PF09789_consen   68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVE-QLEKLREQIEQLE  146 (319)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHH-HHHHHHHHHHHHH
Confidence            3344445555555555555555555555555555555555555443333222     256666443 34 6677777777


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909          246 VDITQLRMQVVELEESRNNLLQENRQLKENVS  277 (475)
Q Consensus       246 ~EiksLqeEVkeLEesr~eL~kEIqqLReqLd  277 (475)
                      .++.++..+..++..+++.......-|...|.
T Consensus       147 ~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn  178 (319)
T PF09789_consen  147 RDLQSLLDEKEELVTERDAYKCKAHRLNHELN  178 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777776666666666666655554

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=96.07  E-value=3.7  Score=46.84  Aligned_cols=192  Identities=19%  Similarity=0.201  Sum_probs=116.9

Q ss_pred             HHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011909           87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL  166 (475)
Q Consensus        87 ~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s  166 (475)
                      ..-+--.|.-|+++--.+-|..+||...+++=-++++.-.-.-+.|+.+.......+..+-++-+..|..++-+.+.+.+
T Consensus       333 ~~qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~lqqq~~~aee~Lk~v~eav~S  412 (739)
T PF07111_consen  333 VKQLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRLQQQTASAEEQLKLVSEAVSS  412 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455667788888899999999999999888888887777777888888888888888888888999999999888887


Q ss_pred             HHHHhhhhHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hHHHHHHHHHHh
Q 011909          167 HIQREGGLEMNIANLQS---EKEFWLQKEAALEQKISQLRDESAALNMKRA-----------------SLEERLKLLEAD  226 (475)
Q Consensus       167 ~~Qkea~Lee~I~qLq~---EI~~~~qEla~L~peiekL~~Ee~~LkqkLa-----------------sLEeKl~~LkaE  226 (475)
                      ..+.   |+.+...++.   .+-.....++--.++   +....+.+..+++                 .+...+.+|..|
T Consensus       413 ~q~~---L~s~ma~ve~a~aRL~sL~~RlSyAvrr---v~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReE  486 (739)
T PF07111_consen  413 SQQW---LESQMAKVEQALARLPSLSNRLSYAVRR---VHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREE  486 (739)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHhHHHHHHhcc---cchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHH
Confidence            7775   3333333332   222222233222222   2222233333433                 678889999999


Q ss_pred             hhhhhhhhhchHHHHh---------hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          227 KDSWTQMESVSKETIA---------GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       227 RD~WLkkEIsLke~IS---------sl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      ||. +..|+-+...+-         .-..+...|.+....|+.......+.+..+..+|..++...+.
T Consensus       487 RdR-l~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqe  553 (739)
T PF07111_consen  487 RDR-LDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQE  553 (739)
T ss_pred             HHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            999 444442222221         1223333444444444444444444444444444444444433

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.03  E-value=2.9  Score=49.58  Aligned_cols=111  Identities=13%  Similarity=0.213  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHHHHHHHHHhhhhH------HHHHhhhhHHHH
Q 011909          112 EGTVQQLQNECDLYKEKVATLEETI-------QQLQRQNDLRMQKEATLEETIKQLRNQNDL------HIQREGGLEMNI  178 (475)
Q Consensus       112 ~e~IkqLq~El~~lk~kl~~L~eti-------kQLe~d~~~~LQkkA~lE~kIKdLe~~~~s------~~Qkea~Lee~I  178 (475)
                      +..|..+.+++..+..+...+..++       .-...+...+++..+.+.-.|++.+.....      -.++-.....+|
T Consensus       226 E~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl  305 (1141)
T KOG0018|consen  226 EACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRL  305 (1141)
T ss_pred             hhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHH
Confidence            4455555555555554444444333       333345566778888888888888877766      122333344556


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909          179 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL  222 (475)
Q Consensus       179 ~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~  222 (475)
                      ...+..|.............|+.+.++-.++..+...++.++..
T Consensus       306 ~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~  349 (1141)
T KOG0018|consen  306 EEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEE  349 (1141)
T ss_pred             HHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666655555543

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.98  E-value=2  Score=48.79  Aligned_cols=37  Identities=16%  Similarity=0.133  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011909          130 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL  166 (475)
Q Consensus       130 ~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s  166 (475)
                      ........-|..+...+-++....|..+..|+..+..
T Consensus       190 ~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l  226 (754)
T TIGR01005       190 ESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDL  226 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3344445555555556666666666666666665443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=95.94  E-value=3.7  Score=45.80  Aligned_cols=214  Identities=18%  Similarity=0.217  Sum_probs=95.0

Q ss_pred             hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH---HHHhhhhHHHH
Q 011909          102 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH---IQREGGLEMNI  178 (475)
Q Consensus       102 ~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~---~Qkea~Lee~I  178 (475)
                      .+-=+++..|++..+.|+.-+..+..-+.-+..-...........-......|..+..|+..++..   ..++..--+.+
T Consensus       255 ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dv  334 (581)
T KOG0995|consen  255 EKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDV  334 (581)
T ss_pred             hcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            444566777777777777666655544444333333333333333334444444444443333221   11112222333


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHhhhhh------------------------
Q 011909          179 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMK----RASLEERLKLLEADKDSW------------------------  230 (475)
Q Consensus       179 ~qLq~EI~~~~qEla~L~peiekL~~Ee~~Lkqk----LasLEeKl~~LkaERD~W------------------------  230 (475)
                      .+...|.....+++..|.++++.|..+.-.++.+    ..+++.+...+..-+...                        
T Consensus       335 e~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n~~~~pe~~~~~~~d  414 (581)
T KOG0995|consen  335 ERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKNLERNPERAATNGVD  414 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccCcccccc
Confidence            3444444445555555555555554443333321    122333332221111110                        


Q ss_pred             hhhhh--chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh---hhhhhhchHHH
Q 011909          231 TQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA---TSEQKDFSTQI  305 (475)
Q Consensus       231 LkkEI--sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e---~eEn~~Ls~E~  305 (475)
                      ++.-+  .+++-+-....++..-..+...|++...++..-|..++..+.....++..++...-+..   -++-++...++
T Consensus       415 ~k~~V~~~l~el~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~  494 (581)
T KOG0995|consen  415 LKSYVKPLLKELLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEI  494 (581)
T ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111  22222333333344444455555555555555555555555555555555544443322   23555566666


Q ss_pred             HHHHhHHHHH
Q 011909          306 EAAGALIDKL  315 (475)
Q Consensus       306 E~l~s~vekL  315 (475)
                      |.+-..+..+
T Consensus       495 e~le~~l~~l  504 (581)
T KOG0995|consen  495 EKLEEELLNL  504 (581)
T ss_pred             HHHHHHHHHH
Confidence            6666555444

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.94  E-value=2.4  Score=43.61  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q 011909          317 TENIELVEKVNDLSVKLDRQSVAAGLSSAIG  347 (475)
Q Consensus       317 ~enq~LeEe~neL~~~l~~~~~~~~~ss~~~  347 (475)
                      .+-..+...+..+...++....-++.++-+.
T Consensus       253 ~~l~~~~~~l~~~~~~l~~~~i~AP~dG~V~  283 (423)
T TIGR01843       253 ARLAELRERLNKARDRLQRLIIRSPVDGTVQ  283 (423)
T ss_pred             HHHHHHHHHHHHHHHHHhhcEEECCCCcEEE
Confidence            3333444445555555555555677777654

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=95.93  E-value=1.8  Score=44.13  Aligned_cols=148  Identities=16%  Similarity=0.221  Sum_probs=76.6

Q ss_pred             HHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchH
Q 011909          159 QLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSK  238 (475)
Q Consensus       159 dLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLk  238 (475)
                      +|..=...+.+-++.++.+|.+++..+-.....--.|.-+.+.+++.-.                 .-|-.+-+++--|.
T Consensus        35 El~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e-----------------~q~~q~y~q~s~Le   97 (333)
T KOG1853|consen   35 ELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQE-----------------DQRVQFYQQESQLE   97 (333)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
Confidence            3333344566666777777777766666555444444444443333221                 11333344444566


Q ss_pred             HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHH
Q 011909          239 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITE  318 (475)
Q Consensus       239 e~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~e  318 (475)
                      ..++.......+|++=|.+||....-|..--..-.-.++.+.+++-.-        ++-|--|.++++...    -|..+
T Consensus        98 ddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqA--------IErnAfLESELdEke----~lles  165 (333)
T KOG1853|consen   98 DDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQA--------IERNAFLESELDEKE----VLLES  165 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHH--------HHHHHHHHHHhhHHH----HHHHH
Confidence            666666666666666677766666665554444444444444433221        122222333333222    23445


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 011909          319 NIELVEKVNDLSVKLDR  335 (475)
Q Consensus       319 nq~LeEe~neL~~~l~~  335 (475)
                      -++|.++-.+|+-.|.-
T Consensus       166 vqRLkdEardlrqelav  182 (333)
T KOG1853|consen  166 VQRLKDEARDLRQELAV  182 (333)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            56788888888777643

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.89  E-value=1.5  Score=50.26  Aligned_cols=83  Identities=27%  Similarity=0.336  Sum_probs=45.7

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHH
Q 011909          107 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE  186 (475)
Q Consensus       107 ~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~  186 (475)
                      +|+-+...|..|+.++...++.+.-...+...|......+.+....+|...+.|                     +.+|.
T Consensus        28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~l---------------------r~e~k   86 (717)
T PF09730_consen   28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRL---------------------REEIK   86 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHH
Confidence            455666666666666666666666655555555555555555544444444444                     44444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          187 FWLQKEAALEQKISQLRDESAALN  210 (475)
Q Consensus       187 ~~~qEla~L~peiekL~~Ee~~Lk  210 (475)
                      ..+..+.++-.+|..|.++|=.|-
T Consensus        87 e~K~rE~rll~dyselEeENislQ  110 (717)
T PF09730_consen   87 EYKFREARLLQDYSELEEENISLQ  110 (717)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHH
Confidence            444455555555555555554443

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.87  E-value=1  Score=51.49  Aligned_cols=58  Identities=21%  Similarity=0.326  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHhhhcch-hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909           83 QREAMAILEETVKHLRNER-ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQ  140 (475)
Q Consensus        83 ~~~~~~~~eeti~~l~~e~-~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe  140 (475)
                      +.|.+.+|-.+++.|.++- .-|-.--.-+++-++.|+.+.+..-.++..+.++++.++
T Consensus       534 ~~E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~  592 (717)
T PF10168_consen  534 PQECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR  592 (717)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666667777776652 333333344444555555555544444444444444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=95.87  E-value=0.0022  Score=72.18  Aligned_cols=15  Identities=20%  Similarity=0.315  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHh
Q 011909           82 LQREAMAILEETVKH   96 (475)
Q Consensus        82 ~~~~~~~~~eeti~~   96 (475)
                      .|+..|.+++|..-+
T Consensus       142 ~Q~~im~~Iqev~~~  156 (713)
T PF05622_consen  142 TQHAIMEAIQEVTSN  156 (713)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcc
Confidence            456666666665544

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=95.86  E-value=3.3  Score=44.53  Aligned_cols=56  Identities=14%  Similarity=0.100  Sum_probs=28.2

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKL  291 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eea  291 (475)
                      ...+.+.+.......+...+..+.....++..+|..--+.+-+..++++.++...+
T Consensus       214 ~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~  269 (499)
T COG4372         214 ARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQA  269 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555555555555555555555554444444444443

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=95.84  E-value=6.2  Score=47.52  Aligned_cols=114  Identities=15%  Similarity=0.156  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHH
Q 011909          113 GTVQQLQNECDLYKEKV----ATLEETI------QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ  182 (475)
Q Consensus       113 e~IkqLq~El~~lk~kl----~~L~eti------kQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq  182 (475)
                      +.|.+|-.+|...-.+|    ++|..|+      ++|+.+-..+-+.-..++....+.........+........|...-
T Consensus      1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~ 1590 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD 1590 (1758)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            34566666665444333    3444433      4455544444444445555555666666666666666677788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011909          183 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD  226 (475)
Q Consensus       183 ~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE  226 (475)
                      ..|....+-+..+..+......-...-.+++..|+.++..||..
T Consensus      1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHK 1634 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888777788888888888888877443

>smart00787 Spc7 Spc7 kinetochore protein

Probab=95.83  E-value=2.8  Score=43.53  Aligned_cols=111  Identities=23%  Similarity=0.298  Sum_probs=65.7

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHH
Q 011909          174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLR  252 (475)
Q Consensus       174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLq  252 (475)
                      |...+..++.+.......+..+.+-+-.+.+..+.|+.++..+...    +.+-+..=..|. .++..|+....++...+
T Consensus       149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~----~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~  224 (312)
T smart00787      149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQL----EDELEDCDPTELDRAKEKLKKLLQEIMIKV  224 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555544444444444444444444444444333222    222111123455 67778888888888888


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909          253 MQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES  288 (475)
Q Consensus       253 eEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~  288 (475)
                      .++.+++.....+...|.....+..++..++...+.
T Consensus       225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~  260 (312)
T smart00787      225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK  260 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888877777777777444

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.83  E-value=5.9  Score=47.17  Aligned_cols=241  Identities=15%  Similarity=0.174  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011909           73 LAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEAT  152 (475)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~  152 (475)
                      .+|-+=+.|-++--  -|.|-|+.|+. ..+   ...-.+-.|.-|+..|..+..++..+.-...+++.+...+--....
T Consensus       649 wdek~~~~L~~~k~--rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~  722 (1141)
T KOG0018|consen  649 WDEKEVDQLKEKKE--RLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDE  722 (1141)
T ss_pred             cCHHHHHHHHHHHH--HHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45556566655544  57777777776 333   2223333444444444444444433333333333333333333333


Q ss_pred             HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHhh
Q 011909          153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF-WLQKEAALEQKISQLRDESAALNMKRASLEERLKLL----EADK  227 (475)
Q Consensus       153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~-~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L----kaER  227 (475)
                      +.-+|-+++..++........|+++++.++..|=. +-+...----+|+...- .....++..+++..+..|    .=++
T Consensus       723 ~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-~~~~a~k~~ef~~q~~~l~~~l~fe~  801 (1141)
T KOG0018|consen  723 FGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-QQEFAKKRLEFENQKAKLENQLDFEK  801 (1141)
T ss_pred             hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhee
Confidence            33333333334333333344444445554444321 22222111223444433 444455555555555544    2222


Q ss_pred             hhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHH
Q 011909          228 DSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQ-LKENVSSLRSQLSSDESKKLQHATSEQKDFSTQI  305 (475)
Q Consensus       228 D~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqq-LReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~  305 (475)
                      +.=++..+ ..++.++....++.+++.+.........++ .+... -+......+.++.. -..++...+.+--+|..++
T Consensus       802 ~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e-~~k~~~~~~~~~tkl~~~i  879 (1141)
T KOG0018|consen  802 QKDTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINE-VKKILRRLVKELTKLDKEI  879 (1141)
T ss_pred             cccHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhh
Confidence            22233333 444444444444444444444433333333 22111 01112222222222 1112222245666677777


Q ss_pred             HHHHhHHHHHHHHHHHH
Q 011909          306 EAAGALIDKLITENIEL  322 (475)
Q Consensus       306 E~l~s~vekL~~enq~L  322 (475)
                      -++.+.++++..+...|
T Consensus       880 ~~~es~ie~~~~er~~l  896 (1141)
T KOG0018|consen  880 TSIESKIERKESERHNL  896 (1141)
T ss_pred             hhhhhHHHHHHHHHHHH
Confidence            77777777766655444

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.82  E-value=2.6  Score=43.04  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          136 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD  204 (475)
Q Consensus       136 ikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~  204 (475)
                      +.+-+..+..+-+.+..++-.|..|...++....+...+.+++.+++.+|.....++..++..|....+
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~  101 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQE  101 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555566666666666666666666666666666666666666666666666666666665554443

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=95.80  E-value=1.4  Score=39.81  Aligned_cols=28  Identities=29%  Similarity=0.488  Sum_probs=13.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909          250 QLRMQVVELEESRNNLLQENRQLKENVS  277 (475)
Q Consensus       250 sLqeEVkeLEesr~eL~kEIqqLReqLd  277 (475)
                      .|..++.+++..+..|...+.-|-.+|+
T Consensus       102 ~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen  102 QLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444555555555544443

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=95.76  E-value=1.1  Score=46.51  Aligned_cols=33  Identities=12%  Similarity=0.333  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQ  142 (475)
Q Consensus       110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d  142 (475)
                      .|++.|+.|++++..+..+...|..+..+++..
T Consensus       164 ~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek  196 (306)
T PF04849_consen  164 ALQEKLKSLEEENEQLRSEASQLKTETDTYEEK  196 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH
Confidence            456666666666666665555555444444443

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.75  E-value=3  Score=43.21  Aligned_cols=44  Identities=23%  Similarity=0.278  Sum_probs=32.3

Q ss_pred             HHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 011909           89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL  132 (475)
Q Consensus        89 ~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L  132 (475)
                      .+.--..+++.|..--+-.-.-|+..|+.||..+..++-+-..+
T Consensus        54 ~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~   97 (309)
T PF09728_consen   54 QLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRR   97 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444566777777778888889999999999998777544443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PRK11281 hypothetical protein; Provisional

Probab=95.72  E-value=2.6  Score=50.57  Aligned_cols=49  Identities=14%  Similarity=0.175  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011909           84 REAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLE  133 (475)
Q Consensus        84 ~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~  133 (475)
                      +.+.+.++.|+..|.. .+.+-++=..|++.+.+...++....++++.+.
T Consensus        59 k~~~~~l~~tL~~L~q-i~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk  107 (1113)
T PRK11281         59 KLVQQDLEQTLALLDK-IDRQKEETEQLKQQLAQAPAKLRQAQAELEALK  107 (1113)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            4455566666666542 334444444555555555555555555554433

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=95.71  E-value=1.3  Score=44.21  Aligned_cols=106  Identities=18%  Similarity=0.255  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHH
Q 011909          115 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA  194 (475)
Q Consensus       115 IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~  194 (475)
                      .+..+.++.........|.+..+.++.+...+-++...++..+..|+.........+..|+.++..++.+|.........
T Consensus        21 ~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~  100 (246)
T PF00769_consen   21 MRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESER  100 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555566666666667777777777777777777777777777766666666777776666666665555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909          195 LEQKISQLRDESAALNMKRASLEERL  220 (475)
Q Consensus       195 L~peiekL~~Ee~~LkqkLasLEeKl  220 (475)
                      -..+-..|+.+...-...+.....++
T Consensus       101 ke~Ea~~lq~el~~ar~~~~~ak~~L  126 (246)
T PF00769_consen  101 KEEEAEELQEELEEAREDEEEAKEEL  126 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555444444444443333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=95.70  E-value=2.1  Score=44.00  Aligned_cols=167  Identities=20%  Similarity=0.194  Sum_probs=97.2

Q ss_pred             HHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909          145 LRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLE  224 (475)
Q Consensus       145 ~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lk  224 (475)
                      .+||++..||-.+..|+-..   .|+..    +|..|+.-...-.++...-+.+|..|+-++..|......++.....  
T Consensus        15 ~aLqKIqelE~QldkLkKE~---qQrQf----QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqK--   85 (307)
T PF10481_consen   15 RALQKIQELEQQLDKLKKER---QQRQF----QLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQK--   85 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHH----hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHH--
Confidence            45677777777666666542   22322    3444444444444555555555556666665555554444443332  


Q ss_pred             Hhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh---------
Q 011909          225 ADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA---------  294 (475)
Q Consensus       225 aERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e---------  294 (475)
                            |.-++ .-+-.+..+...+.+.++++..       |..++..++..|+..+.....-......|.         
T Consensus        86 ------lshdlq~Ke~qv~~lEgQl~s~Kkqie~-------Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p  152 (307)
T PF10481_consen   86 ------LSHDLQVKESQVNFLEGQLNSCKKQIEK-------LEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATP  152 (307)
T ss_pred             ------hhHHHhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCC
Confidence                  33344 4444566666666666665555       445555555555555544444333333443         


Q ss_pred             -hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909          295 -TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL  333 (475)
Q Consensus       295 -~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l  333 (475)
                       +--.....+..|-|.....+...+..+|+.+|.-|.++.
T Consensus       153 ~tp~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq~k~  192 (307)
T PF10481_consen  153 LTPSQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQAKK  192 (307)
T ss_pred             CChhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhccc
Confidence             224455667788888999999999999999999998765

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=95.66  E-value=3.6  Score=47.67  Aligned_cols=96  Identities=15%  Similarity=0.121  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhH
Q 011909          181 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELE  259 (475)
Q Consensus       181 Lq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLE  259 (475)
                      ..+.......+++.+..++..+..++..|...|...+.-|..|...|.. .-.++ .|...|.+...++.+|+.++..+.
T Consensus        83 ~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~-~e~~~~~l~~~l~~~eken~~Lkye~~~~~  161 (769)
T PF05911_consen   83 WEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQ-AEAEIEDLMARLESTEKENSSLKYELHVLS  161 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444556667777778888888888888888777777777666665 55777 899999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011909          260 ESRNNLLQENRQLKENVS  277 (475)
Q Consensus       260 esr~eL~kEIqqLReqLd  277 (475)
                      ....-...|-.--+...+
T Consensus       162 keleir~~E~~~~~~~ae  179 (769)
T PF05911_consen  162 KELEIRNEEREYSRRAAE  179 (769)
T ss_pred             HHHHHHHHHHHHhHHHHH
Confidence            887776666655555544

The function of this family is unknown.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.65  E-value=0.17  Score=52.24  Aligned_cols=93  Identities=26%  Similarity=0.409  Sum_probs=55.0

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHH
Q 011909          174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM  253 (475)
Q Consensus       174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqe  253 (475)
                      ....+..++.++....+++..+..++..|..+...+.+.+..++.+...|+.+...              .-.....+..
T Consensus        41 ~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~--------------~~~~~n~~~~  106 (314)
T PF04111_consen   41 SEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEE--------------YWREYNELQL  106 (314)
T ss_dssp             -HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Confidence            34556667777777777777777777777777777777777777666666443333              2223334444


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909          254 QVVELEESRNNLLQENRQLKENVSSLR  280 (475)
Q Consensus       254 EVkeLEesr~eL~kEIqqLReqLdelq  280 (475)
                      +......++.++...+.....+|+.++
T Consensus       107 ~l~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen  107 ELIEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555553

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.48  E-value=0.11  Score=49.82  Aligned_cols=47  Identities=28%  Similarity=0.269  Sum_probs=30.0

Q ss_pred             hhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909          231 TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS  277 (475)
Q Consensus       231 LkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd  277 (475)
                      +..+| .....+..++.++..|+-+...++.....+..|+..|.++.=
T Consensus       135 l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm  182 (194)
T PF08614_consen  135 LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM  182 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444 555566666666667777777777777777777777755443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=95.42  E-value=3.9  Score=42.35  Aligned_cols=122  Identities=20%  Similarity=0.214  Sum_probs=79.9

Q ss_pred             hhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhH
Q 011909          102 ESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANL  181 (475)
Q Consensus       102 ~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qL  181 (475)
                      +..+++-+=+....+.++..+..+......+...+.++..++..+.-.+..+|.-=++|+..+..-...-.....+-..-
T Consensus        25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~k  104 (309)
T PF09728_consen   25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEK  104 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666677777788888888888889999999999999999999999999888888887765554333333333344


Q ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909          182 QSEKEFWLQK-EAALEQKISQLRDESAALNMKRASLEERLKLL  223 (475)
Q Consensus       182 q~EI~~~~qE-la~L~peiekL~~Ee~~LkqkLasLEeKl~~L  223 (475)
                      +.++..+++. +..|...++.-.+.+..+.+.-..|.+++..|
T Consensus       105 R~el~~kFq~~L~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l  147 (309)
T PF09728_consen  105 RKELSEKFQATLKDIQAQMEEQSERNIKLREENEELREKLKSL  147 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Confidence            4444444433 25555555555544444444444455555544

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=95.40  E-value=0.044  Score=61.95  Aligned_cols=84  Identities=21%  Similarity=0.268  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHH
Q 011909          245 SVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVE  324 (475)
Q Consensus       245 ~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeE  324 (475)
                      ...+..|+.++..|+.....|..++..|..+|..+..+..--....=+.++..|=-...+.- ..+.++.|.+||+.|..
T Consensus       502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~-k~~~l~~L~~En~~L~~  580 (722)
T PF05557_consen  502 SEELNELQKEIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQI-KKSTLEALQAENEDLLA  580 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            34445566666666666666666666666666543211100000000001222222222222 24678889999988888


Q ss_pred             HHHHH
Q 011909          325 KVNDL  329 (475)
Q Consensus       325 e~neL  329 (475)
                      .+..|
T Consensus       581 ~l~~l  585 (722)
T PF05557_consen  581 RLRSL  585 (722)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            87777

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=95.37  E-value=3.1  Score=42.81  Aligned_cols=26  Identities=42%  Similarity=0.680  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          311 LIDKLITENIELVEKVNDLSVKLDRQ  336 (475)
Q Consensus       311 ~vekL~~enq~LeEe~neL~~~l~~~  336 (475)
                      ++++|.+.||+|..+++||...|+-+
T Consensus       279 l~dQLK~qNQEL~ski~ELE~rLq~q  304 (307)
T PF10481_consen  279 LLDQLKAQNQELRSKINELELRLQGQ  304 (307)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence            78999999999999999998777544

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=95.34  E-value=3.9  Score=42.10  Aligned_cols=8  Identities=25%  Similarity=0.613  Sum_probs=4.2

Q ss_pred             CCceeecc
Q 011909          410 SGEIVQIP  417 (475)
Q Consensus       410 ~~eiv~~~  417 (475)
                      .|.|+.|.
T Consensus       346 ~g~V~~i~  353 (423)
T TIGR01843       346 NGKVKSIS  353 (423)
T ss_pred             cEEEEEEC
Confidence            45555554

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.32  E-value=3.3  Score=40.86  Aligned_cols=40  Identities=28%  Similarity=0.370  Sum_probs=22.3

Q ss_pred             HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          240 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSL  279 (475)
Q Consensus       240 ~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdel  279 (475)
                      .+..+...+...+..+..|+.+..+..+++..|..--+++
T Consensus       162 e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeL  201 (207)
T PF05010_consen  162 ELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDEL  201 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555556666666666666665554444444

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=95.30  E-value=3.6  Score=44.12  Aligned_cols=38  Identities=18%  Similarity=0.199  Sum_probs=22.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccc
Q 011909          310 ALIDKLITENIELVEKVNDLSVKLDRQSVAAGLSSAIG  347 (475)
Q Consensus       310 s~vekL~~enq~LeEe~neL~~~l~~~~~~~~~ss~~~  347 (475)
                      ..+....++-..++..+..+...|+....-+++++-+.
T Consensus       291 ~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~dG~V~  328 (457)
T TIGR01000       291 QEITDLNQKLLELESKIKSLKEDSQKGVIKAPEDGVLH  328 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCCeEEE
Confidence            33444444444555556666566666666788887664

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=95.30  E-value=3  Score=40.26  Aligned_cols=118  Identities=16%  Similarity=0.221  Sum_probs=82.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909          108 EATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF  187 (475)
Q Consensus       108 e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~  187 (475)
                      +.+|...|++++..+...+..++..-...++++.++..+.......+.+...-=.......-         ...=.++..
T Consensus        25 ~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLA---------r~al~~k~~   95 (221)
T PF04012_consen   25 EKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLA---------REALQRKAD   95 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH---------HHHHHHHHH
Confidence            48999999999999999999999999999999998888888888777777554333221111         123334444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhh
Q 011909          188 WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME  234 (475)
Q Consensus       188 ~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkE  234 (475)
                      .......+...|..+......|+..+..++.++..++..++.+.-..
T Consensus        96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~  142 (221)
T PF04012_consen   96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE  142 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555666666666666666677777777777777777666654444

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=95.14  E-value=3.7  Score=40.47  Aligned_cols=92  Identities=20%  Similarity=0.257  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHH
Q 011909          113 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE  192 (475)
Q Consensus       113 e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEl  192 (475)
                      ..|..++.++...+.+...|......+...+.....-+..+|.+|.++=..   ..+.......+|..+..+.+.....+
T Consensus         9 ~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e---~~~~~~~~~~~i~~~~~erdq~~~dL   85 (207)
T PF05010_consen    9 AAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE---KQKQKELSEAEIQKLLKERDQAYADL   85 (207)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHhhHHHHHHHH
Confidence            344445555555555555555555555555566666666666666664433   22223333444555555555544444


Q ss_pred             HHHHHHHHHHHHHHH
Q 011909          193 AALEQKISQLRDESA  207 (475)
Q Consensus       193 a~L~peiekL~~Ee~  207 (475)
                      ..++.-+..|.....
T Consensus        86 ~s~E~sfsdl~~rye  100 (207)
T PF05010_consen   86 NSLEKSFSDLHKRYE  100 (207)
T ss_pred             HHHHhhHHHHHHHHH
Confidence            444444443333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.11  E-value=7.4  Score=43.77  Aligned_cols=32  Identities=19%  Similarity=0.395  Sum_probs=13.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQR  141 (475)
Q Consensus       110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~  141 (475)
                      .++..+.+++.++..+.++++.+...+.+++.
T Consensus       213 ~le~el~~l~~~~e~l~~~i~~l~~ele~a~~  244 (650)
T TIGR03185       213 ALEAELKEQSEKYEDLAQEIAHLRNELEEAQR  244 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444433333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=94.99  E-value=2.7  Score=38.04  Aligned_cols=27  Identities=33%  Similarity=0.428  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          115 VQQLQNECDLYKEKVATLEETIQQLQR  141 (475)
Q Consensus       115 IkqLq~El~~lk~kl~~L~etikQLe~  141 (475)
                      +..|+.++..+..........+..+..
T Consensus         5 ~~~l~~e~~~~~~~~~~~~~~~~~~~~   31 (132)
T PF07926_consen    5 LSSLQSELQRLKEQEEDAEEQLQSLRE   31 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444443333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=94.99  E-value=1.2  Score=49.18  Aligned_cols=138  Identities=20%  Similarity=0.204  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchh------hhhHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909           79 QHLLQREAMAILEETVKHLRNERE------SHIQKEATLE-----GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRM  147 (475)
Q Consensus        79 ~~~~~~~~~~~~eeti~~l~~e~~------~~~~~e~~l~-----e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~L  147 (475)
                      -..+|++-..+|.|.+|-|++||.      +|+..|+++=     -..-.+-.+++..-.++..+++.+.+.-+++....
T Consensus       153 ~S~~~~~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~  232 (596)
T KOG4360|consen  153 RSAFQRELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQ  232 (596)
T ss_pred             hhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356888888899999999999995      4444444331     12334556677777777788888888888888888


Q ss_pred             HHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909          148 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  223 (475)
Q Consensus       148 QkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L  223 (475)
                      ...+.+.-.|-+++.+...+......+   -..|+.-++.    -..+..++..+.+.++...+.+.+.++.|+-|
T Consensus       233 Ee~skLlsql~d~qkk~k~~~~Ekeel---~~~Lq~~~da----~~ql~aE~~EleDkyAE~m~~~~EaeeELk~l  301 (596)
T KOG4360|consen  233 EENSKLLSQLVDLQKKIKYLRHEKEEL---DEHLQAYKDA----QRQLTAELEELEDKYAECMQMLHEAEEELKCL  301 (596)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHH---HHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            888888888888887776665543322   2234444443    35678889999999999999999999999988

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=94.94  E-value=9.1  Score=43.94  Aligned_cols=93  Identities=17%  Similarity=0.227  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 011909          189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQ  267 (475)
Q Consensus       189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~k  267 (475)
                      ..++..|..++..+......+......++++.+.|+.-... +.+|+ .++-.+..++.....+...+..|....+....
T Consensus       502 ~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~-l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~  580 (698)
T KOG0978|consen  502 REEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESK-LIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEA  580 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444545555555555544433333 22333 34444444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHhh
Q 011909          268 ENRQLKENVSSLRSQ  282 (475)
Q Consensus       268 EIqqLReqLdelqse  282 (475)
                      ...+++.++......
T Consensus       581 ~le~i~~~~~e~~~e  595 (698)
T KOG0978|consen  581 KLEQIQEQYAELELE  595 (698)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444333

>PLN02939 transferase, transferring glycosyl groups

Probab=94.70  E-value=13  Score=44.39  Aligned_cols=78  Identities=14%  Similarity=0.158  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhh-hhhh-hhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 011909          265 LLQENRQLKENVSSLRSQLSSDESKKLQHA-TSEQ-KDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVAAGL  342 (475)
Q Consensus       265 L~kEIqqLReqLdelqseiqsLE~Eeal~e-~eEn-~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~~~~~  342 (475)
                      ...+++.|+.+++++...+..---....++ ++-- +++...-|++......+.+.-+--.+.+.++...|+....+.+-
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (977)
T PLN02939        322 VLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKK  401 (977)
T ss_pred             HhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            344555566666655443332111111111 1111 33333344444445555555544555555555555555444443

>PF15294 Leu_zip: Leucine zipper

Probab=94.64  E-value=1.4  Score=45.31  Aligned_cols=60  Identities=25%  Similarity=0.403  Sum_probs=47.5

Q ss_pred             hhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909           97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  165 (475)
Q Consensus        97 l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~  165 (475)
                      |.-.++.-..  ++|.+.|..|++|+..++..+..       ++.....++..++.++..|++|+....
T Consensus       118 L~pl~e~g~~--~ll~kEi~rLq~EN~kLk~rl~~-------le~~at~~l~Ek~kl~~~L~~lq~~~~  177 (278)
T PF15294_consen  118 LEPLNESGGS--ELLNKEIDRLQEENEKLKERLKS-------LEKQATSALDEKSKLEAQLKELQDEQG  177 (278)
T ss_pred             cccccccchH--HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666665332  67888888888888877776666       788999999999999999999999433

>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]

Probab=94.61  E-value=7.1  Score=41.13  Aligned_cols=38  Identities=29%  Similarity=0.373  Sum_probs=31.6

Q ss_pred             hhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 011909          296 SEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKL  333 (475)
Q Consensus       296 eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l  333 (475)
                      .+-+.|.-.|.+|..++--|+.+-..|...+.+|.+..
T Consensus       292 k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v  329 (391)
T KOG1850|consen  292 KEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQV  329 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccc
Confidence            36677888889999999999999999999999986643

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.59  E-value=9.9  Score=42.71  Aligned_cols=117  Identities=18%  Similarity=0.215  Sum_probs=78.9

Q ss_pred             hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHH
Q 011909          103 SHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQ  182 (475)
Q Consensus       103 ~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq  182 (475)
                      ..-+|+ .|+..|..|+++.+...+++..+.++.-+.........+---.-|      +.-..-+..++.....+|-.|+
T Consensus        41 lLeeK~-~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~E------esLLqESaakE~~yl~kI~ele  113 (772)
T KOG0999|consen   41 LLEEKE-DLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEERE------ESLLQESAAKEEYYLQKILELE  113 (772)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH------HHHHHHHHHhHHHHHHHHHHHH
Confidence            333443 467888899999999999998888887766654433222211111      1222334456666777777788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh
Q 011909          183 SEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD  226 (475)
Q Consensus       183 ~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE  226 (475)
                      .+.....+++.....+.+.+......++..-+.+|..+.+|++|
T Consensus       114 neLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~e  157 (772)
T KOG0999|consen  114 NELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDE  157 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence            88888888888888888888888888877777777777777544

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.58  E-value=0.67  Score=47.92  Aligned_cols=55  Identities=18%  Similarity=0.352  Sum_probs=37.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011909          109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ  163 (475)
Q Consensus       109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~  163 (475)
                      ......+.+++.++..++.+.+.|..+.+.|+.++....+....++...++|...
T Consensus        39 ~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~e   93 (314)
T PF04111_consen   39 SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEE   93 (314)
T ss_dssp             ---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777788888888888888888888887777777777777766666544

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=94.57  E-value=13  Score=44.89  Aligned_cols=72  Identities=17%  Similarity=0.156  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909          116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF  187 (475)
Q Consensus       116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~  187 (475)
                      ..+.+.|.......-..+..|++...+...+-+.+++++....--+....+..++-.+|+..+..|+..+..
T Consensus      1566 e~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1566 EDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333444444444444455555555665555555555555555555555555555544444444444444443

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=94.48  E-value=5.1  Score=38.96  Aligned_cols=16  Identities=31%  Similarity=0.403  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q 011909          116 QQLQNECDLYKEKVAT  131 (475)
Q Consensus       116 kqLq~El~~lk~kl~~  131 (475)
                      ..|+.++..+..++.-
T Consensus        15 ~~L~n~l~elq~~l~~   30 (194)
T PF15619_consen   15 KELQNELAELQRKLQE   30 (194)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.47  E-value=7.5  Score=41.75  Aligned_cols=90  Identities=16%  Similarity=0.122  Sum_probs=42.2

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--H----HHhhhhhhhhhh-chHHHHhhhHH
Q 011909          174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL--L----EADKDSWTQMES-VSKETIAGLSV  246 (475)
Q Consensus       174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~--L----kaERD~WLkkEI-sLke~ISsl~~  246 (475)
                      +..+|..++.++.........=-|++..+..+-+.+.+.+.........  +    ...--.||...+ .++..+..+..
T Consensus       252 l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~  331 (498)
T TIGR03007       252 LDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEA  331 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555544444333466666666666665554433211000  0    001113344444 55555555555


Q ss_pred             HHHHHHHHHHHhHHHHH
Q 011909          247 DITQLRMQVVELEESRN  263 (475)
Q Consensus       247 EiksLqeEVkeLEesr~  263 (475)
                      .+..|..++..++....
T Consensus       332 ~~~~l~~~~~~~~~~~~  348 (498)
T TIGR03007       332 RVAELTARIERLESLLR  348 (498)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            55555555555554443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=94.35  E-value=15  Score=43.75  Aligned_cols=82  Identities=18%  Similarity=0.266  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHH-------HHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909           77 ERQHLLQREAMAILEET-------VKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQK  149 (475)
Q Consensus        77 ~~~~~~~~~~~~~~eet-------i~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQk  149 (475)
                      ....+|+.+.  .++++       |..|+.+-+..==....+++.++.+..++.....++..+...+.++..+...+.+.
T Consensus       616 k~~~f~~~~~--~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r  693 (1072)
T KOG0979|consen  616 KSRNFFSVSP--VLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQR  693 (1072)
T ss_pred             hhhhhhccch--HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            4556677666  55544       44444444444334444555555555555555556666666666666666677777


Q ss_pred             HHhHHHHHHHH
Q 011909          150 EATLEETIKQL  160 (475)
Q Consensus       150 kA~lE~kIKdL  160 (475)
                      ++.+|..+.+|
T Consensus       694 ~~~ie~~~~~l  704 (1072)
T KOG0979|consen  694 KERIENLVVDL  704 (1072)
T ss_pred             HHHHHHHHHHH
Confidence            77666654444

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=94.35  E-value=11  Score=42.06  Aligned_cols=27  Identities=19%  Similarity=0.282  Sum_probs=15.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909          304 QIEAAGALIDKLITENIELVEKVNDLS  330 (475)
Q Consensus       304 E~E~l~s~vekL~~enq~LeEe~neL~  330 (475)
                      .+..+...+..+...|+.|..++.-|.
T Consensus       307 ~~~~l~~~l~~~~~~~~~l~~e~~~v~  333 (560)
T PF06160_consen  307 NLKELYEYLEHAKEQNKELKEELERVS  333 (560)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555566666666666666555443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=94.25  E-value=4.1  Score=40.54  Aligned_cols=115  Identities=19%  Similarity=0.223  Sum_probs=88.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909          109 ATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW  188 (475)
Q Consensus       109 ~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~  188 (475)
                      .+|+..|++.+.++....+.++.+-...++++.+++.+......++.+...-=....-..-+  ..-+++..|+.....+
T Consensus        27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr--~al~~~~~le~~~~~~  104 (225)
T COG1842          27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAR--EALEEKQSLEDLAKAL  104 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH--HHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999888888888776655544433222  2345566777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011909          189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA  225 (475)
Q Consensus       189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lka  225 (475)
                      .+.+........+|+.....|..++..+..+...|++
T Consensus       105 ~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~a  141 (225)
T COG1842         105 EAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKA  141 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777766654

>TIGR02977 phageshock_pspA phage shock protein A

Probab=94.04  E-value=6.5  Score=38.42  Aligned_cols=115  Identities=17%  Similarity=0.151  Sum_probs=82.8

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHH
Q 011909          107 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE  186 (475)
Q Consensus       107 ~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~  186 (475)
                      -+.+|...|+++++.|...++.++..-...+.++.++..+-...+..+.+...-=.......-+++-         .+..
T Consensus        25 P~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al---------~~k~   95 (219)
T TIGR02977        25 PEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAAL---------IEKQ   95 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH---------HHHH
Confidence            4578999999999999999999999888888888887777777777766665544333333222221         1555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 011909          187 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW  230 (475)
Q Consensus       187 ~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~W  230 (475)
                      ........+..+|..+......++.++..|+.++..+++-++.+
T Consensus        96 ~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l  139 (219)
T TIGR02977        96 KAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKAL  139 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666777777777777777777777777777777777766653

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.01  E-value=11  Score=43.85  Aligned_cols=200  Identities=20%  Similarity=0.227  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          128 KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA  207 (475)
Q Consensus       128 kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~  207 (475)
                      ++--+-....++=..+.+.+...+.++..|.+|....+--......+.. +..-.++|............++....   .
T Consensus       510 kIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD-v~s~~sEIK~~f~~~ss~e~E~~~~d---e  585 (769)
T PF05911_consen  510 KISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD-VSSMRSEIKKNFDGDSSSEAEINSED---E  585 (769)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHHHhhhhcccccccccchH---H
Confidence            3333444455666788889999999999999999998887777766665 22223333332222222211111111   2


Q ss_pred             HHHHHHHhHHHHHHHHHHhhhhh------hhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909          208 ALNMKRASLEERLKLLEADKDSW------TQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR  280 (475)
Q Consensus       208 ~LkqkLasLEeKl~~LkaERD~W------LkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq  280 (475)
                      .-......++.++..|+.++...      ....+ .++..+......+..|+.++..+.++......++...++....+.
T Consensus       586 a~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le  665 (769)
T PF05911_consen  586 ADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLE  665 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22233334455555555544441      11223 344444445555555555555555555555555555555554444


Q ss_pred             hhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909          281 SQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQSVA  339 (475)
Q Consensus       281 seiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~~~~  339 (475)
                      .+...++        .|...|...+..|-..|++..+....+.-+-.+|..+|......
T Consensus       666 ~~~~~~e--------~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~  716 (769)
T PF05911_consen  666 TRLKDLE--------AEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKE  716 (769)
T ss_pred             hhhhHHH--------HHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcc
Confidence            4444322        25566777788888888777777777777777777766554433

The function of this family is unknown.

>PF12795 MscS_porin: Mechanosensitive ion channel porin domain

Probab=94.01  E-value=6.8  Score=38.57  Aligned_cols=15  Identities=13%  Similarity=0.302  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHhhh
Q 011909           84 REAMAILEETVKHLR   98 (475)
Q Consensus        84 ~~~~~~~eeti~~l~   98 (475)
                      ....+.++.|+..|.
T Consensus        17 ~~~i~~l~~al~~L~   31 (240)
T PF12795_consen   17 KALIQDLQQALSFLD   31 (240)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            334556666666664

>PF15397 DUF4618: Domain of unknown function (DUF4618)

Probab=93.93  E-value=8.3  Score=39.32  Aligned_cols=145  Identities=23%  Similarity=0.263  Sum_probs=84.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHhhhhhhhhhhchHHHHhhhHHHHHHHHH
Q 011909          176 MNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL--EADKDSWTQMESVSKETIAGLSVDITQLRM  253 (475)
Q Consensus       176 e~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L--kaERD~WLkkEIsLke~ISsl~~EiksLqe  253 (475)
                      .++...+.+...|..++   ..++..|..+..++..++....+.++-|  +-+++--++.     ..|+.+.-++..|+.
T Consensus        63 ~~l~~ak~eLqe~eek~---e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~-----vqIa~L~rqlq~lk~  134 (258)
T PF15397_consen   63 KQLQQAKAELQEWEEKE---ESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKA-----VQIANLVRQLQQLKD  134 (258)
T ss_pred             HHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHHHHHHHH
Confidence            34555666666666554   4677788888888888888888888887  3333333332     144444444443332


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHH-----------H-HHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHH
Q 011909          254 QVVELEESRNNLLQENRQLKENVS-----------S-LRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIE  321 (475)
Q Consensus       254 EVkeLEesr~eL~kEIqqLReqLd-----------e-lqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~  321 (475)
                      .-   ..+..+|.+-+...+..+.           . +-...+.--...++..+-+|..+-.+++..-.+++.+..+...
T Consensus       135 ~q---qdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~  211 (258)
T PF15397_consen  135 SQ---QDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQ  211 (258)
T ss_pred             HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21   1122222222222222222           1 1111111111122222569999999999999999988888888


Q ss_pred             HHHHHHHHHH
Q 011909          322 LVEKVNDLSV  331 (475)
Q Consensus       322 LeEe~neL~~  331 (475)
                      |..+|..|+.
T Consensus       212 L~~eV~~L~~  221 (258)
T PF15397_consen  212 LRAEVEQLQA  221 (258)
T ss_pred             HHHHHHHHHH
Confidence            8888888877

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=93.89  E-value=2.4  Score=39.80  Aligned_cols=45  Identities=27%  Similarity=0.373  Sum_probs=17.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909          178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL  222 (475)
Q Consensus       178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~  222 (475)
                      +..+..+++........+...+..+++....+...+...++++..
T Consensus        90 l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~  134 (191)
T PF04156_consen   90 LQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDS  134 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            333333333333333334444444444433333333333333333

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=93.80  E-value=9.8  Score=43.45  Aligned_cols=217  Identities=19%  Similarity=0.208  Sum_probs=128.6

Q ss_pred             HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011909           90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ  169 (475)
Q Consensus        90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Q  169 (475)
                      |...-..+-+-.+-+.+.-..|+..|..+      +.++++       ++..-+..+++..|..|.++.+|-...+...-
T Consensus        23 L~~IW~~igE~~~e~d~~l~~le~e~~~~------y~~kve-------~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~   89 (660)
T KOG4302|consen   23 LQKIWDEIGESETERDKKLLRLEQECLEI------YKRKVE-------EASESKARLLQEIAVIEAELNDLCSALGEPSI   89 (660)
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHHH------HHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            44444555555555666655666655543      223332       34444555566666667777766665443221


Q ss_pred             HhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhh----hhhhhhhhchHHHHh
Q 011909          170 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---EADK----DSWTQMESVSKETIA  242 (475)
Q Consensus       170 kea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L---kaER----D~WLkkEIsLke~IS  242 (475)
                      -..      ...+.+. ..++.+..|.|.++.|..+.+.=+..+..+-.++..|   -++.    ..++-.+-+|-.   
T Consensus        90 ~~~------~~~k~e~-tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl---  159 (660)
T KOG4302|consen   90 IGE------ISDKIEG-TLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSL---  159 (660)
T ss_pred             ccc------cccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccH---
Confidence            111      0011111 4566677777777777777777777777777777766   2222    222222221110   


Q ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh-------h--hhhhhchH-HHHHHHhHH
Q 011909          243 GLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA-------T--SEQKDFST-QIEAAGALI  312 (475)
Q Consensus       243 sl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e-------~--eEn~~Ls~-E~E~l~s~v  312 (475)
                         ..+..++..+.+|+..+....+++..++..|..++..+.- .=...+..       .  +.++-++. -+++|+..|
T Consensus       160 ---~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~-~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v  235 (660)
T KOG4302|consen  160 ---EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGL-DFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMV  235 (660)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcccchhhhhhhhhhccCcccccCCHHHHHHHHHHH
Confidence               4566788888888888888888888888888877665433 11101111       1  13455544 468999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhh
Q 011909          313 DKLITENIELVEKVNDLSVKL  333 (475)
Q Consensus       313 ekL~~enq~LeEe~neL~~~l  333 (475)
                      .+|..+..+...++.+|..++
T Consensus       236 ~~l~~~k~qr~~kl~~l~~~~  256 (660)
T KOG4302|consen  236 KKLKEEKKQRLQKLQDLRTKL  256 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999988888888888765

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.66  E-value=16  Score=41.81  Aligned_cols=51  Identities=12%  Similarity=0.084  Sum_probs=27.0

Q ss_pred             Hhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011909          225 ADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN  275 (475)
Q Consensus       225 aERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReq  275 (475)
                      ..+-.-++.++ .+++.+......+....+++.++..+..++..+.++..+.
T Consensus       178 ~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~  229 (716)
T KOG4593|consen  178 EMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAEL  229 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            33333445555 5555666665666655566665555555555544444333

>KOG1103 consensus Predicted coiled-coil protein [Function unknown]

Probab=93.63  E-value=5.8  Score=42.31  Aligned_cols=65  Identities=22%  Similarity=0.246  Sum_probs=52.8

Q ss_pred             HHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909          224 EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES  288 (475)
Q Consensus       224 kaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~  288 (475)
                      -+||.--|+.|.-.++.|.....+..-|+.++..++.....+..|...|++-+..+...++-+.-
T Consensus       230 aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p  294 (561)
T KOG1103|consen  230 AAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP  294 (561)
T ss_pred             HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence            56777778888888888888888888999999998888888999999998888877666555443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=93.47  E-value=25  Score=43.30  Aligned_cols=26  Identities=8%  Similarity=0.063  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909          263 NNLLQENRQLKENVSSLRSQLSSDES  288 (475)
Q Consensus       263 ~eL~kEIqqLReqLdelqseiqsLE~  288 (475)
                      .++..+++.++..|+.+..++..+..
T Consensus       924 eel~a~L~e~r~rL~~l~~el~~~~~  949 (1353)
T TIGR02680       924 DEIRARLAETRAALASGGRELPRLAE  949 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555443

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=93.46  E-value=21  Score=42.50  Aligned_cols=39  Identities=8%  Similarity=0.200  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          247 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       247 EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      .+..+..+...+..........|...+..|..++.++++
T Consensus       319 ~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~~  357 (1072)
T KOG0979|consen  319 EVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQE  357 (1072)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            333444444455555555666666666666666666555

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=93.44  E-value=4.5  Score=36.24  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909          119 QNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF  187 (475)
Q Consensus       119 q~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~  187 (475)
                      ++...++...++.|+..+...+..+..+.+.+-.++..+..|+....+-.++-..|+.+|..+...++.
T Consensus         8 ~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~   76 (107)
T PF09304_consen    8 EASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED   76 (107)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444555555555555555555555555555555555555555555555555555555555555554

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=93.39  E-value=4.8  Score=41.78  Aligned_cols=150  Identities=19%  Similarity=0.216  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHH
Q 011909          117 QLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALE  196 (475)
Q Consensus       117 qLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~  196 (475)
                      +|..++...+-+-...=.+-.||+.++..++-.+-.|..+|-+++.              .+.+++.++..+..++..++
T Consensus        81 ~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE--------------~~~~~~re~~eK~~elEr~K  146 (302)
T PF09738_consen   81 DLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEE--------------TLAQLQREYREKIRELERQK  146 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence            3466666677777777777788999988888888888777776654              47788888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhh-----hh--------------chHHHHhhhHHH-HHHHHHHHH
Q 011909          197 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQM-----ES--------------VSKETIAGLSVD-ITQLRMQVV  256 (475)
Q Consensus       197 peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkk-----EI--------------sLke~ISsl~~E-iksLqeEVk  256 (475)
                      -.+..|+.+...|+..+.....-|.-    +---|-.     +.              ...+....+... -..|.-.+.
T Consensus       147 ~~~d~L~~e~~~Lre~L~~rdeli~k----hGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLk  222 (302)
T PF09738_consen  147 RAHDSLREELDELREQLKQRDELIEK----HGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLK  222 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----CCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHH
Confidence            88888888888887777555443331    1110111     11              122222222222 235556678


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011909          257 ELEESRNNLLQENRQLKENVSSLRSQLS  284 (475)
Q Consensus       257 eLEesr~eL~kEIqqLReqLdelqseiq  284 (475)
                      .|-..+..|..+|..|+.+|+..+....
T Consensus       223 Kl~~eke~L~~qv~klk~qLee~~~~~~  250 (302)
T PF09738_consen  223 KLADEKEELLEQVRKLKLQLEERQSEGR  250 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8888899999999999999986654433

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=93.28  E-value=7.3  Score=36.60  Aligned_cols=114  Identities=20%  Similarity=0.200  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909          110 TLEGTVQQLQNECDLYKEKVATLE-ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW  188 (475)
Q Consensus       110 ~l~e~IkqLq~El~~lk~kl~~L~-etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~  188 (475)
                      .++-.+..++..+...+.==..|. .+-.||+-++..+..++..-...+..|+.......+.-...-+++.-+..++...
T Consensus        17 ~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l   96 (177)
T PF13870_consen   17 TLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERL   96 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555554443222232 4557888888888888888888888888888888888666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909          189 LQKEAALEQKISQLRDESAALNMKRASLEERLKLL  223 (475)
Q Consensus       189 ~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L  223 (475)
                      ..++....+.+.++.++-...+.....+......|
T Consensus        97 ~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l  131 (177)
T PF13870_consen   97 KQELKDREEELAKLREELYRVKKERDKLRKQNKKL  131 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666555555555555444444444433

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=93.22  E-value=2.8  Score=45.67  Aligned_cols=30  Identities=17%  Similarity=0.158  Sum_probs=17.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          250 QLRMQVVELEESRNNLLQENRQLKENVSSL  279 (475)
Q Consensus       250 sLqeEVkeLEesr~eL~kEIqqLReqLdel  279 (475)
                      .|++..+.+...+.+....|++|+++|..+
T Consensus       418 kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl  447 (493)
T KOG0804|consen  418 KLKELEEREKEALGSKDEKITDLQEQLRDL  447 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            344444455555555666666666666655

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=93.19  E-value=9.4  Score=37.63  Aligned_cols=50  Identities=14%  Similarity=0.221  Sum_probs=32.9

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      .|.+.+..+...+.+|......+.........+|..+-++|.+...+-..
T Consensus       113 eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~  162 (205)
T KOG1003|consen  113 ELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEF  162 (205)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            55556666666777777777777777777777777777776655444333

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.19  E-value=2.6  Score=42.03  Aligned_cols=68  Identities=19%  Similarity=0.230  Sum_probs=32.4

Q ss_pred             HhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909          214 ASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ  282 (475)
Q Consensus       214 asLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqse  282 (475)
                      .++....+.|..||.. .-.|+ -+...|..+...|+.++.+..........+..+..-|++.+++++.+
T Consensus        35 ~e~~kE~~~L~~Er~~-h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   35 EEYRKEMEELLQERMA-HVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555555554 22333 33444444444444444444444444444555555555555555444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=93.18  E-value=22  Score=41.72  Aligned_cols=44  Identities=27%  Similarity=0.438  Sum_probs=18.3

Q ss_pred             hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          242 AGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       242 Ssl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      .........+...+..+......+...+...++.+..+...+..
T Consensus       399 ~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~  442 (908)
T COG0419         399 AELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ  442 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444444444444333333

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=93.13  E-value=8.8  Score=43.64  Aligned_cols=15  Identities=27%  Similarity=0.173  Sum_probs=6.2

Q ss_pred             HHHHHHhhccccccc
Q 011909          455 LVSFVAKYVSGADLV  469 (475)
Q Consensus       455 lisfva~yvsgadlv  469 (475)
                      +-.|+...-...|+|
T Consensus       645 ~~~~l~~l~~~yD~I  659 (754)
T TIGR01005       645 MFSLVIHARLYSDCV  659 (754)
T ss_pred             HHHHHHHHHhhCCEE
Confidence            334444433344443

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=93.05  E-value=0.83  Score=37.92  Aligned_cols=53  Identities=17%  Similarity=0.382  Sum_probs=29.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 011909          178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW  230 (475)
Q Consensus       178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~W  230 (475)
                      +.+|+..|.......+.|.-++..|+.++..+...-..|...-.+|+.+|..|
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~   58 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW   58 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555555555566665555555555555555555555555

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.85  E-value=4.9  Score=36.74  Aligned_cols=57  Identities=23%  Similarity=0.329  Sum_probs=29.7

Q ss_pred             HHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909          167 HIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  223 (475)
Q Consensus       167 ~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L  223 (475)
                      .......+..++..+..++.........++.++..+..+.+.+..++..++.+++.+
T Consensus        50 ~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~  106 (151)
T PF11559_consen   50 DMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL  106 (151)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455556666666555555555555555555555555555554444444433

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=92.82  E-value=18  Score=39.82  Aligned_cols=12  Identities=33%  Similarity=0.595  Sum_probs=9.0

Q ss_pred             CchhHHHHHHhh
Q 011909          451 APFRLVSFVAKY  462 (475)
Q Consensus       451 apfrlisfva~y  462 (475)
                      -+|||-.|.-||
T Consensus       483 ~~ir~g~fLrr~  494 (511)
T PF09787_consen  483 FSIRLGIFLRRY  494 (511)
T ss_pred             hhHHHHHHHhcC
Confidence            367888888777

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PLN03188 kinesin-12 family protein; Provisional

Probab=92.66  E-value=29  Score=42.41  Aligned_cols=144  Identities=14%  Similarity=0.214  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          138 QLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN-------LQSEKEFWLQKEAALEQKISQLRDESAALN  210 (475)
Q Consensus       138 QLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q-------Lq~EI~~~~qEla~L~peiekL~~Ee~~Lk  210 (475)
                      .|+.++-.|+..+..-=.--.+|+...+++..--..+..+|..       |..-....-+==|+|..+|..|++....|.
T Consensus      1048 ~l~~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll 1127 (1320)
T PLN03188       1048 KLEQERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLL 1127 (1320)
T ss_pred             HHHHHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666555444555555555554443333333322       333333333444888889999988888888


Q ss_pred             HHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          211 MKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       211 qkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      .+=....+.|..+|..=..-=.+- -=.++|.++..++..|+-+   -|.++.-|..|+..|+.||-..-.-++.
T Consensus      1128 ~~hr~i~egi~dvkkaaakag~kg-~~~~f~~alaae~s~l~~e---reker~~~~~enk~l~~qlrdtaeav~a 1198 (1320)
T PLN03188       1128 ARHRRIQEGIDDVKKAAARAGVRG-AESKFINALAAEISALKVE---REKERRYLRDENKSLQAQLRDTAEAVQA 1198 (1320)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHhhHHHHHHH
Confidence            877777777777743222210011 1256888888888888765   4668888999999999988766444444

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=92.56  E-value=19  Score=39.61  Aligned_cols=103  Identities=16%  Similarity=0.194  Sum_probs=58.7

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhh------------hhhhhhhhhh----hhhhh
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS------------SDESKKLQHA----TSEQK  299 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiq------------sLE~Eeal~e----~eEn~  299 (475)
                      ++++.+..+.......++.+.+.......|.-++..++.---.++.+..            -++.+-+++.    ++--+
T Consensus       387 d~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverLQ  466 (527)
T PF15066_consen  387 DIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQ  466 (527)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHH
Confidence            3444444444455555555555555555555554444444333333321            1233333333    34556


Q ss_pred             hchHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011909          300 DFSTQIEAAG-ALIDKLITENIELVEKVNDLSVKLDRQSV  338 (475)
Q Consensus       300 ~Ls~E~E~l~-s~vekL~~enq~LeEe~neL~~~l~~~~~  338 (475)
                      .|..++|.++ +.|+.|..++.-.+.+|-.|...++....
T Consensus       467 ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ek  506 (527)
T PF15066_consen  467 QLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEK  506 (527)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777888877 78888888888888888888877765543

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.52  E-value=2  Score=35.66  Aligned_cols=65  Identities=18%  Similarity=0.307  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909          136 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS  200 (475)
Q Consensus       136 ikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peie  200 (475)
                      ..+|+.....++..++.++.++.+|+..+....+....|..+..+|+.+-..|...+..+..+++
T Consensus         6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~   70 (72)
T PF06005_consen    6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            35677777777888888888888888888777777777777788888888888777777766664

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=92.44  E-value=21  Score=39.74  Aligned_cols=128  Identities=13%  Similarity=0.141  Sum_probs=67.9

Q ss_pred             HHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909          208 ALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVE-----LEESRNNLLQENRQLKENVSSLRSQ  282 (475)
Q Consensus       208 ~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVke-----LEesr~eL~kEIqqLReqLdelqse  282 (475)
                      .+-.++..+....+.+..+.  +--....+...|..+...+..+...+..     .+.....+..+|..|-+.+..=-.-
T Consensus       223 ~~P~ql~eL~~gy~~m~~~g--y~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~A  300 (560)
T PF06160_consen  223 EFPDQLEELKEGYREMEEEG--YYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEA  300 (560)
T ss_pred             HhHHHHHHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455666666666664433  2223345556666666666655555544     4445555555555555555421111


Q ss_pred             hhhhhhhhhh-hh-----hhhhhhchHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011909          283 LSSDESKKLQ-HA-----TSEQKDFSTQIEAAGA---LIDKLITENIELVEKVNDLSVKLDRQS  337 (475)
Q Consensus       283 iqsLE~Eeal-~e-----~eEn~~Ls~E~E~l~s---~vekL~~enq~LeEe~neL~~~l~~~~  337 (475)
                      ...++..... ..     ...|+.|..+++++..   +-+.....-+.|.+.++.|...++...
T Consensus       301 k~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~  364 (560)
T PF06160_consen  301 KKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLE  364 (560)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111 11     3588999999999887   233445555667777777766554443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=92.35  E-value=17  Score=38.55  Aligned_cols=123  Identities=20%  Similarity=0.148  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          132 LEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNM  211 (475)
Q Consensus       132 L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~Lkq  211 (475)
                      -+.+-+||+..+..++-.......-+...+.       .-..+|.-+.+++.|+....-.+..+.-++..-.++...|.+
T Consensus        97 ~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~-------~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Lnr  169 (401)
T PF06785_consen   97 RQQESEQLQSQNQKLKNQLFHVREVFMKTKG-------DIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNR  169 (401)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-------hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHH
Confidence            3344455555555544444443333322222       223477778888888888888888888888888888888888


Q ss_pred             HHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHH
Q 011909          212 KRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNN  264 (475)
Q Consensus       212 kLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~e  264 (475)
                      .+++.-+-+..|-+|...=+...   -.-|.....-|..|...|.+|--+..+
T Consensus       170 ELaE~layqq~L~~eyQatf~eq---~~ml~kRQ~yI~~LEsKVqDLm~Eirn  219 (401)
T PF06785_consen  170 ELAEALAYQQELNDEYQATFVEQ---HSMLDKRQAYIGKLESKVQDLMYEIRN  219 (401)
T ss_pred             HHHHHHHHHHHHHHHhhcccccc---hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888777777766655522221   223444445555555555554444333

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=92.30  E-value=8.5  Score=44.29  Aligned_cols=42  Identities=19%  Similarity=0.387  Sum_probs=24.4

Q ss_pred             HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909          239 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR  280 (475)
Q Consensus       239 e~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq  280 (475)
                      +.+.++..+..++++++..+...+..+...+..|+..++.++
T Consensus       216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~  257 (916)
T KOG0249|consen  216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR  257 (916)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344555555555666666666666666666666666666555

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=92.23  E-value=5.6  Score=43.41  Aligned_cols=71  Identities=21%  Similarity=0.280  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHH-HHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          136 IQQLQRQNDLRMQKEATLEE-TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDES  206 (475)
Q Consensus       136 ikQLe~d~~~~LQkkA~lE~-kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee  206 (475)
                      -.||+.++..+.+....++- .+...+.......+....++.....++++......++..+..++.++.++.
T Consensus       327 ~sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel  398 (493)
T KOG0804|consen  327 TSQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKEL  398 (493)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677777777666665555 333333333333333333333333344444443333333333333333333

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=92.10  E-value=1.2  Score=37.77  Aligned_cols=50  Identities=24%  Similarity=0.325  Sum_probs=36.2

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      -|+..|..++..+..|..++..+...+..|..++++|+..-..|+.++.+
T Consensus        22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~   71 (79)
T PRK15422         22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666666677777777777777777788888887777777766655

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=92.08  E-value=23  Score=39.30  Aligned_cols=105  Identities=14%  Similarity=0.185  Sum_probs=47.3

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHhhhhhhhhhh-chHHHHhhhHHHHH
Q 011909          174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL---EADKDSWTQMES-VSKETIAGLSVDIT  249 (475)
Q Consensus       174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L---kaERD~WLkkEI-sLke~ISsl~~Eik  249 (475)
                      ++.-.+.++.-...|.-.+..|..+++.-..+-.+|+.+.++|-..++.-   -.+= ..+.+|= .|.+.+...+-+..
T Consensus       314 ~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~f-e~mn~Ere~L~reL~~i~~~~~  392 (622)
T COG5185         314 YENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQF-ELMNQEREKLTRELDKINIQSD  392 (622)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHhcchHH
Confidence            33333444444444444444444444444444444444444443333321   0000 0122222 45566666666677


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          250 QLRMQVVELEESRNNLLQENRQLKENVSSL  279 (475)
Q Consensus       250 sLqeEVkeLEesr~eL~kEIqqLReqLdel  279 (475)
                      .|.+.|.+-+-.....-+++..+-.+++.+
T Consensus       393 ~L~k~V~~~~leaq~~~~slek~~~~~~sl  422 (622)
T COG5185         393 KLTKSVKSRKLEAQGIFKSLEKTLRQYDSL  422 (622)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777665554444444444444444444

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=91.94  E-value=4.6  Score=36.14  Aligned_cols=92  Identities=24%  Similarity=0.296  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011909          136 IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS  215 (475)
Q Consensus       136 ikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLas  215 (475)
                      +.-|+.-+..+--..+.++..|.+.+..++-....+..|...+..|+....+..+.++.|..+|..+......  .+++.
T Consensus         4 ~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~--eK~ak   81 (107)
T PF09304_consen    4 KEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED--EKQAK   81 (107)
T ss_dssp             ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence            3344444555555566666666666666666655555566666666666666666666666666655555554  33333


Q ss_pred             HHHHHHHHHHhhhh
Q 011909          216 LEERLKLLEADKDS  229 (475)
Q Consensus       216 LEeKl~~LkaERD~  229 (475)
                      ++..-+.+++++|.
T Consensus        82 ~~l~~r~~k~~~dk   95 (107)
T PF09304_consen   82 LELESRLLKAQKDK   95 (107)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh
Confidence            33333334444443

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=91.93  E-value=8  Score=41.90  Aligned_cols=101  Identities=22%  Similarity=0.236  Sum_probs=73.5

Q ss_pred             hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHH
Q 011909          172 GGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQL  251 (475)
Q Consensus       172 a~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksL  251 (475)
                      ..+.+++..+..++++..+.-+.+..+.-.+..+..+++.++..+|..|+.||.|-+. +..|      .-+...+.+-+
T Consensus         9 s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~-l~e~------~v~~~a~~~~~   81 (459)
T KOG0288|consen    9 SENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQ-LNEE------RVREEATEKTL   81 (459)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH------HHHHHHHHHHH
Confidence            3455566667777777777777777777788888888888888888888888776665 3333      33366777778


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          252 RMQVVELEESRNNLLQENRQLKENVSSL  279 (475)
Q Consensus       252 qeEVkeLEesr~eL~kEIqqLReqLdel  279 (475)
                      ..++..++..+-....+|..++++-.+.
T Consensus        82 t~~~~~~en~~~r~~~eir~~~~q~~e~  109 (459)
T KOG0288|consen   82 TVDVLIAENLRIRSLNEIRELREQKAEF  109 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            8888888888888888888887765544

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=91.93  E-value=18  Score=37.86  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=21.3

Q ss_pred             HHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHH
Q 011909           89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNECD  123 (475)
Q Consensus        89 ~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~  123 (475)
                      -++..-+.|+-+.+.--.+-..|+..|+.|....-
T Consensus        31 sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv   65 (310)
T PF09755_consen   31 SLQQENRVLKRELETEKARCKHLQEENRALREASV   65 (310)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555566666666666666666666666655544

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=91.82  E-value=11  Score=41.94  Aligned_cols=139  Identities=22%  Similarity=0.207  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          124 LYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLR  203 (475)
Q Consensus       124 ~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~  203 (475)
                      .+.-+|+-+..+.-+|+.+...+...-+..+.+=..   ......+..-..+.++..++.+++++..+++       .+.
T Consensus       163 aL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~---~y~~~~KelrdtN~q~~s~~eel~~kt~el~-------~q~  232 (596)
T KOG4360|consen  163 ALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQ---LYGDCVKELRDTNTQARSGQEELQSKTKELS-------RQQ  232 (596)
T ss_pred             HHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence            455556666666666666666555555555443221   1223334444455566666666666555544       556


Q ss_pred             HHHHHHHHHHHhHHHHHHHH---HHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 011909          204 DESAALNMKRASLEERLKLL---EADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLR  280 (475)
Q Consensus       204 ~Ee~~LkqkLasLEeKl~~L---kaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelq  280 (475)
                      +++..|.-.++.+..|+.-+   +.+++..|+.-++          -=..++.+.+++++...++-.......+.|..++
T Consensus       233 Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~d----------a~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr  302 (596)
T KOG4360|consen  233 EENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKD----------AQRQLTAELEELEDKYAECMQMLHEAEEELKCLR  302 (596)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            66666666777777777766   5566664444333          2334555566666666666666666666666555


Q ss_pred             hh
Q 011909          281 SQ  282 (475)
Q Consensus       281 se  282 (475)
                      +.
T Consensus       303 s~  304 (596)
T KOG4360|consen  303 SC  304 (596)
T ss_pred             cC
Confidence            44

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=91.79  E-value=29  Score=39.97  Aligned_cols=114  Identities=18%  Similarity=0.223  Sum_probs=63.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHH----
Q 011909          110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK----  185 (475)
Q Consensus       110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI----  185 (475)
                      -|.-.-..-++++.++..+...|+...+-++..+..-.+..+...-....|+...+...+.-......+.+|++-|    
T Consensus       152 ql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~  231 (739)
T PF07111_consen  152 QLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQV  231 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhC
Confidence            3333344445555555566666666666666655555555555555555555554443333222222244444444    


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909          186 ------EFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  223 (475)
Q Consensus       186 ------~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L  223 (475)
                            ..|..+-..|...+..|.+..+.|-.-..-|.-+++.|
T Consensus       232 p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSL  275 (739)
T PF07111_consen  232 PPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSL  275 (739)
T ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  24666667777777777777777766666666666665

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=91.72  E-value=21  Score=38.28  Aligned_cols=11  Identities=27%  Similarity=0.401  Sum_probs=6.6

Q ss_pred             cCCceeeccCC
Q 011909          409 YSGEIVQIPLD  419 (475)
Q Consensus       409 ~~~eiv~~~ld  419 (475)
                      ..|.|..|.-|
T Consensus       392 ~~G~V~~Is~~  402 (457)
T TIGR01000       392 LDGTITSISSA  402 (457)
T ss_pred             EEEEEEEEcCC
Confidence            35666666554

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=91.64  E-value=15  Score=36.29  Aligned_cols=99  Identities=16%  Similarity=0.217  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHH
Q 011909          187 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLL  266 (475)
Q Consensus       187 ~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~  266 (475)
                      .-..+|..+..+|+.....-..-..+...|+..++.+...-..+-.++-.+..........++-|...+.+.+-.-....
T Consensus        85 EVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aE  164 (205)
T KOG1003|consen   85 EVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAE  164 (205)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            33455666667777766666666666777777777775554444444444444555555566666666666666666666


Q ss_pred             HHHHHHHHHHHHHHhhhhh
Q 011909          267 QENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       267 kEIqqLReqLdelqseiqs  285 (475)
                      ..++.|...++.|...+..
T Consensus       165 RsVakLeke~DdlE~kl~~  183 (205)
T KOG1003|consen  165 RRVAKLEKERDDLEEKLEE  183 (205)
T ss_pred             HHHHHHcccHHHHHHhhHH
Confidence            6666666666666444444

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=91.47  E-value=21  Score=37.68  Aligned_cols=37  Identities=5%  Similarity=0.061  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011909          130 ATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL  166 (475)
Q Consensus       130 ~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s  166 (475)
                      .....+..-|+.+...+-++....|..+..|+..+..
T Consensus       167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i  203 (444)
T TIGR03017       167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGI  203 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3344456667777777777777777778887776644

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]

Probab=91.47  E-value=14  Score=42.64  Aligned_cols=39  Identities=23%  Similarity=0.158  Sum_probs=18.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909          177 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  216 (475)
Q Consensus       177 ~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL  216 (475)
                      +..+|+...+....++.+.-. ...|-..++++.+.++.+
T Consensus       113 kn~slqerLelaE~~l~qs~r-ae~lpeveael~qr~~al  151 (916)
T KOG0249|consen  113 KNRSLQERLELAEPKLQQSLR-AETLPEVEAELAQRNAAL  151 (916)
T ss_pred             hhhhhhHHHHHhhHhhHhHHh-hhhhhhhHHHHHHHHHHH
Confidence            344444455554444443333 455555555555555443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=91.24  E-value=21  Score=37.34  Aligned_cols=89  Identities=21%  Similarity=0.301  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHhhhhhhhhhhchHHHHhh-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011909          215 SLEERLKLLEADKDSWTQMESVSKETIAG-LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQH  293 (475)
Q Consensus       215 sLEeKl~~LkaERD~WLkkEIsLke~ISs-l~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~  293 (475)
                      .|..++.+|..++..       |...+.. +...+..|..++..|+........++..|+..--.+...+-. +.+..  
T Consensus       110 ~L~rkl~qLr~EK~~-------lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~-EQE~l--  179 (310)
T PF09755_consen  110 DLSRKLNQLRQEKVE-------LENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQ-EQEAL--  179 (310)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH-HHHHH--
Confidence            455566666555544       2222222 223344555555555554444444444444333333333333 22222  


Q ss_pred             hhhhhhhchHHHHHHHhHHHHHHHHHHHHHH
Q 011909          294 ATSEQKDFSTQIEAAGALIDKLITENIELVE  324 (475)
Q Consensus       294 e~eEn~~Ls~E~E~l~s~vekL~~enq~LeE  324 (475)
                                 +.+|..-+++|-++++.|..
T Consensus       180 -----------vN~L~Kqm~~l~~eKr~Lq~  199 (310)
T PF09755_consen  180 -----------VNRLWKQMDKLEAEKRRLQE  199 (310)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHH
Confidence                       23445555666666666655

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=91.24  E-value=2.2  Score=35.41  Aligned_cols=68  Identities=22%  Similarity=0.235  Sum_probs=44.6

Q ss_pred             HHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          146 RMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR  213 (475)
Q Consensus       146 ~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkL  213 (475)
                      +.+.++.....|+.|..+......++..+...|+.|+..+......+..+..++..+..+...+...+
T Consensus         3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l   70 (74)
T PF12329_consen    3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL   70 (74)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44556666677777777777777777777777777777777766666666666666555555554444

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=91.09  E-value=15  Score=36.48  Aligned_cols=94  Identities=21%  Similarity=0.358  Sum_probs=52.2

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHH
Q 011909          178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVV  256 (475)
Q Consensus       178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVk  256 (475)
                      +..+......+.+.-.....++.++.++...+.+.+..+..++..|+.        .+ .++..+..+..++..|..++.
T Consensus        23 ~~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~--------~~~~l~~~v~~q~~el~~L~~qi~   94 (251)
T PF11932_consen   23 LDQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEV--------YNEQLERQVASQEQELASLEQQIE   94 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444444443322        33 455677777777777777777


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHH
Q 011909          257 ELEESRNNLLQENRQLKENVSSL  279 (475)
Q Consensus       257 eLEesr~eL~kEIqqLReqLdel  279 (475)
                      .++..+..+..-....-+.|..+
T Consensus        95 ~~~~~~~~l~p~m~~m~~~L~~~  117 (251)
T PF11932_consen   95 QIEETRQELVPLMEQMIDELEQF  117 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777766666666653

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=91.04  E-value=9  Score=36.29  Aligned_cols=93  Identities=22%  Similarity=0.232  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909          121 ECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKIS  200 (475)
Q Consensus       121 El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peie  200 (475)
                      .+..+..++..|..+..+|..+...--+.....|.++-.+++.   +.+....|..++.+|+.++.....+...+.....
T Consensus        44 ~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~---~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~  120 (158)
T PF09744_consen   44 RNQEHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQ---WRQERKDLQSQVEQLEEENRQLELKLKNLSDQSS  120 (158)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence            3344555555666666666655554444444444444444333   2222223444444444444443333333333333


Q ss_pred             HHHHHHHHHHHHHHhH
Q 011909          201 QLRDESAALNMKRASL  216 (475)
Q Consensus       201 kL~~Ee~~LkqkLasL  216 (475)
                      .|...+..++.++..+
T Consensus       121 rlee~e~~l~~e~~~l  136 (158)
T PF09744_consen  121 RLEEREAELKKEYNRL  136 (158)
T ss_pred             ccchhHHHHHHHHHHH
Confidence            3333333333333333

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein

Probab=90.79  E-value=18  Score=35.73  Aligned_cols=52  Identities=15%  Similarity=0.137  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhH
Q 011909          115 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDL  166 (475)
Q Consensus       115 IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s  166 (475)
                      |.-|...+.....++....-+|-.|+.++.+.--.....+..+..|+.....
T Consensus        12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~   63 (202)
T PF06818_consen   12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRT   63 (202)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4445555555555555555555566666665555555666666666555443

Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=90.55  E-value=22  Score=40.67  Aligned_cols=77  Identities=17%  Similarity=0.231  Sum_probs=50.3

Q ss_pred             HHHHHHHhhhcchhhhhHHHhhHH-------HHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHhHH
Q 011909           89 ILEETVKHLRNERESHIQKEATLE-------GTVQQLQNECDLYKEKV----ATLEET---IQQLQRQNDLRMQKEATLE  154 (475)
Q Consensus        89 ~~eeti~~l~~e~~~~~~~e~~l~-------e~IkqLq~El~~lk~kl----~~L~et---ikQLe~d~~~~LQkkA~lE  154 (475)
                      .++|++.+|+..+|+.+--=..|-       +.|++|+-=|+.+..+|    +.|+..   +--|+++.=++|-.++.+.
T Consensus       108 ~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLK  187 (861)
T KOG1899|consen  108 EYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELK  187 (861)
T ss_pred             HHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhH
Confidence            689999999999998764433332       45677766666554433    444433   3557777777777777777


Q ss_pred             HHHHHHHhhhh
Q 011909          155 ETIKQLRNQND  165 (475)
Q Consensus       155 ~kIKdLe~~~~  165 (475)
                      +++--|+....
T Consensus       188 LkltalEkeq~  198 (861)
T KOG1899|consen  188 LKLTALEKEQN  198 (861)
T ss_pred             HHHHHHHHHhh
Confidence            77776665443

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.35  E-value=12  Score=33.90  Aligned_cols=36  Identities=25%  Similarity=0.276  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909          181 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  216 (475)
Q Consensus       181 Lq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL  216 (475)
                      |++.|-...-+++.+..++..|..+...+.+.+..+
T Consensus        21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l   56 (120)
T PF12325_consen   21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKL   56 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333334444444444444444444433

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=90.20  E-value=21  Score=35.78  Aligned_cols=52  Identities=19%  Similarity=0.286  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 011909          112 EGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQ  163 (475)
Q Consensus       112 ~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~  163 (475)
                      +..+.+++++.......+...+.++..|...+..+-.....|+.+..+++..
T Consensus        11 e~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~   62 (246)
T PF00769_consen   11 EERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEE   62 (246)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444444333343333333333

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=89.90  E-value=3.5  Score=33.95  Aligned_cols=60  Identities=22%  Similarity=0.266  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH
Q 011909          111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR  170 (475)
Q Consensus       111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qk  170 (475)
                      |+-.|..|+..++.+.+++.+.+...+.|..+++.++......=..+.+|+.+++...+.
T Consensus         3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e   62 (69)
T PF14197_consen    3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE   62 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667778888888888888888888888888888888877777777777777666544433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.85  E-value=21  Score=35.17  Aligned_cols=8  Identities=13%  Similarity=0.758  Sum_probs=3.1

Q ss_pred             HHHHHHHH
Q 011909          322 LVEKVNDL  329 (475)
Q Consensus       322 LeEe~neL  329 (475)
                      |..++..+
T Consensus       149 l~~~l~~i  156 (302)
T PF10186_consen  149 LIQELSEI  156 (302)
T ss_pred             HHHHHHHH
Confidence            33334333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.81  E-value=4  Score=40.08  Aligned_cols=78  Identities=13%  Similarity=0.194  Sum_probs=42.8

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHH
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKL  315 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL  315 (475)
                      +....+..++.++..|+.++..+..+..   .....++.++......+..|.        ++|++|..+++.+...++.+
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~--------~~n~~L~~~l~~~~~~~~~l  158 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLK--------EENQKLKNQLIVAQKKVDAA  158 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666666554433   333333344443333322211        36667776666666666666


Q ss_pred             HHHHHHHHH
Q 011909          316 ITENIELVE  324 (475)
Q Consensus       316 ~~enq~LeE  324 (475)
                      .+++..+..
T Consensus       159 ~~~~~~~~~  167 (206)
T PRK10884        159 NLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHH
Confidence            666655554

>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []

Probab=89.62  E-value=25  Score=37.37  Aligned_cols=78  Identities=23%  Similarity=0.343  Sum_probs=52.1

Q ss_pred             HHHHHHHhhhcchhhhhH----HHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909           89 ILEETVKHLRNERESHIQ----KEATLEGTVQQLQNECD----LYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL  160 (475)
Q Consensus        89 ~~eeti~~l~~e~~~~~~----~e~~l~e~IkqLq~El~----~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdL  160 (475)
                      +..+.|..-+.+...-.+    -..++..++.+|...-+    .+.+.+......+.+|+.++...++.++.+|..|..|
T Consensus       205 ~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L  284 (384)
T PF03148_consen  205 FSNENIQRAEKERQSSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDL  284 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            445666666555533222    23455555555555544    6667777788888888888888888888888888888


Q ss_pred             HhhhhH
Q 011909          161 RNQNDL  166 (475)
Q Consensus       161 e~~~~s  166 (475)
                      +..+..
T Consensus       285 ~~ai~~  290 (384)
T PF03148_consen  285 EKAIRD  290 (384)
T ss_pred             HHHHHH
Confidence            877553

The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=89.59  E-value=3.7  Score=34.09  Aligned_cols=68  Identities=26%  Similarity=0.330  Sum_probs=39.2

Q ss_pred             HHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909          209 LNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV  276 (475)
Q Consensus       209 LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqL  276 (475)
                      +...+++-.+.|.+|..|-..|-++|..+...|..+...+..+..++..+.........++..|+..+
T Consensus         3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l   70 (74)
T PF12329_consen    3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL   70 (74)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555666666777766666666666555555555555555555555555555555555555554444

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=89.55  E-value=7.8  Score=32.81  Aligned_cols=74  Identities=15%  Similarity=0.250  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909          111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF  187 (475)
Q Consensus       111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~  187 (475)
                      |.+.+..++.|++.+.++..........++......++....+--++-+|+..+..-.+.   -+++|.+|+.+++.
T Consensus         2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~---YEeEI~rLr~eLe~   75 (79)
T PF08581_consen    2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQ---YEEEIARLRRELEQ   75 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence            456777888899999999988888899999999999999999999999999886555544   56666666666544

; PDB: 3VP9_B 3VP8_B.

>KOG2991 consensus Splicing regulator [RNA processing and modification]

Probab=89.53  E-value=28  Score=35.94  Aligned_cols=214  Identities=16%  Similarity=0.174  Sum_probs=112.5

Q ss_pred             cccccccc-c-cCCCCCCCcchhhhHHH----------HHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHH
Q 011909           51 ADIQNVQV-D-ADRHQSNGAESANLAEA----------ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQL  118 (475)
Q Consensus        51 ~~~~~~~~-~-~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqL  118 (475)
                      |-+--++| + ..+|.|+-+.--.+.-.          -+++|+|-|+..---|.            +.-.+|...|..|
T Consensus        46 A~~~~tGm~~~~~~~~p~pk~~~~seq~~~~~a~~elq~~ks~~Q~e~~v~a~e~------------~~~rll~d~i~nL  113 (330)
T KOG2991|consen   46 APGVRTGMILSMTNEEPLPKKVRLSEQDFKVMARDELQLRKSWKQYEAYVQALEG------------KYTRLLSDDITNL  113 (330)
T ss_pred             CCCCccchhhhhccCCCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------cccchhHHHHHhh
Confidence            33333344 3 56677776543222211          24457887773221111            3445666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHh--HHHHHHH----HHHHH
Q 011909          119 QNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN--LQSEKEF----WLQKE  192 (475)
Q Consensus       119 q~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~q--Lq~EI~~----~~qEl  192 (475)
                      +.+-..+++..+.       ....-.-++...|..|-...++.+.+....+..+--..++.+  |.--|..    ...++
T Consensus       114 k~se~~lkqQ~~~-------a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rlK~el  186 (330)
T KOG2991|consen  114 KESEEKLKQQQQE-------AARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRLKGEL  186 (330)
T ss_pred             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHHHHHH
Confidence            5555544444333       333445567777778877777777777766665444444333  1222222    23334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 011909          193 AALEQKISQLRDESAALNMKRA-----SLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ  267 (475)
Q Consensus       193 a~L~peiekL~~Ee~~LkqkLa-----sLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~k  267 (475)
                      ...+.+++.++++.++|+.-=.     -|=+|-+-|+.|...+=++  ..+-.|..+..++.--+..-.+|.++...|..
T Consensus       187 e~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q--~s~Gria~Le~eLAmQKs~seElkssq~eL~d  264 (330)
T KOG2991|consen  187 EQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQ--ASEGRIAELEIELAMQKSQSEELKSSQEELYD  264 (330)
T ss_pred             HHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhh--hhcccHHHHHHHHHHHHhhHHHHHHhHHHHHH
Confidence            5555666666666666654211     2334445555544332111  23345555655555555556666666666666


Q ss_pred             HHHHHHHHHHHHHhhhhh
Q 011909          268 ENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       268 EIqqLReqLdelqseiqs  285 (475)
                      -+..|-+.++..++.+--
T Consensus       265 fm~eLdedVEgmqsTili  282 (330)
T KOG2991|consen  265 FMEELDEDVEGMQSTILI  282 (330)
T ss_pred             HHHHHHHHHhcchhhHHH
Confidence            666666666666555544

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=89.39  E-value=47  Score=38.33  Aligned_cols=163  Identities=15%  Similarity=0.115  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHH
Q 011909          111 LEGTVQQLQNECDLYKEKVATLEET-IQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWL  189 (475)
Q Consensus       111 l~e~IkqLq~El~~lk~kl~~L~et-ikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~  189 (475)
                      +...++.+++.++....++...-+. +.+.++-+...++-...++.++.++.+......+.-..++.+....+..-.+..
T Consensus       106 ~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~  185 (716)
T KOG4593|consen  106 LLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLH  185 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344556666666555555443333 346666667777777777777777766655554444444444444444444434


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhh--hhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHH
Q 011909          190 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT--QMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQ  267 (475)
Q Consensus       190 qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WL--kkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~k  267 (475)
                      ..+...+.+|..-...-....++.+...+.+..+...+..--  -+.+.....+..++..+..--.+..+++.+..++..
T Consensus       186 s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~~~~~dqlqel~~l~~a~~q~~e  265 (716)
T KOG4593|consen  186 SELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAINKNMKDQLQELEELERALSQLRE  265 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444444444433322211  111133334444444444444444455555555555


Q ss_pred             HHHHHH
Q 011909          268 ENRQLK  273 (475)
Q Consensus       268 EIqqLR  273 (475)
                      +...++
T Consensus       266 e~~~~r  271 (716)
T KOG4593|consen  266 ELATLR  271 (716)
T ss_pred             HHHHHH
Confidence            555443

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.00  E-value=30  Score=35.57  Aligned_cols=56  Identities=18%  Similarity=0.272  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909          110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  165 (475)
Q Consensus       110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~  165 (475)
                      =++..|..|+.++..+..+...+...+.+++.+...+=++++.++.+|++.+....
T Consensus        49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~  104 (265)
T COG3883          49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLK  104 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666667777777777777777777777776666666666666666666555443

>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.98  E-value=16  Score=40.49  Aligned_cols=148  Identities=16%  Similarity=0.140  Sum_probs=89.8

Q ss_pred             HHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHhhhhhhhhhh
Q 011909          157 IKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL-EADKDSWTQMES  235 (475)
Q Consensus       157 IKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L-kaERD~WLkkEI  235 (475)
                      -++|+.++....|.-..+...|+.+.+.+....+.-+...++|++.+.....|..++-.+=-++..| +..+ ..-..|-
T Consensus       336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~-~L~~~EE  414 (508)
T KOG3091|consen  336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGY-ALTPDEE  414 (508)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cCCccHH
Confidence            3688888888888888888889999999998887779999999999988888888777775555555 2222 2112222


Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh---hhhhhhchHHHHHHHhHH
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHA---TSEQKDFSTQIEAAGALI  312 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e---~eEn~~Ls~E~E~l~s~v  312 (475)
                      .|...+       ..|..++..-    +++...+..|.+++..-.+.+.. .....+..   .+..+.|..++|++..++
T Consensus       415 ~Lr~Kl-------dtll~~ln~P----nq~k~Rl~~L~e~~r~q~~~~~~-~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv  482 (508)
T KOG3091|consen  415 ELRAKL-------DTLLAQLNAP----NQLKARLDELYEILRMQNSQLKL-QESYWIDFDKLIEMKEHLTQEQEALTKLV  482 (508)
T ss_pred             HHHHHH-------HHHHHHhcCh----HHHHHHHHHHHHHHHhhcchhcc-ccceeechhhhHHHHHHHHHHHHHHHHHH
Confidence            222222       2233333222    55555666665555544333333 22222111   345577777777777766


Q ss_pred             HHHHH
Q 011909          313 DKLIT  317 (475)
Q Consensus       313 ekL~~  317 (475)
                      .=+.-
T Consensus       483 ~Ilk~  487 (508)
T KOG3091|consen  483 NILKG  487 (508)
T ss_pred             HHHHh
Confidence            65544

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=88.95  E-value=67  Score=39.57  Aligned_cols=26  Identities=19%  Similarity=0.229  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHH
Q 011909          247 DITQLRMQVVELEESRNNLLQENRQL  272 (475)
Q Consensus       247 EiksLqeEVkeLEesr~eL~kEIqqL  272 (475)
                      +...|..++.+++.++..+..++-..
T Consensus      1009 ~~~~l~~q~~e~~re~~~ld~Qi~~~ 1034 (1294)
T KOG0962|consen 1009 TLRNLERKLKELERELSELDKQILEA 1034 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33345555555555555555555444

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=88.87  E-value=42  Score=37.14  Aligned_cols=63  Identities=21%  Similarity=0.273  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909          261 SRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD  334 (475)
Q Consensus       261 sr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~  334 (475)
                      ...+|..=+.=++++|+.++.++..+....+    .+.       -.|...+..|...|+++-.+-..|..-|-
T Consensus       134 ~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~----~~~-------~~L~~qi~~L~~~n~~i~~ea~nLt~ALk  196 (475)
T PRK10361        134 NRQSLNSLLSPLREQLDGFRRQVQDSFGKEA----QER-------HTLAHEIRNLQQLNAQMAQEAINLTRALK  196 (475)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3344444455566666666666665444333    122       23344455555556666666666655443

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=88.79  E-value=44  Score=37.31  Aligned_cols=139  Identities=21%  Similarity=0.232  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHH-HHHHHHHHhHHHHHHHHHHHHH
Q 011909          193 AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDIT-QLRMQVVELEESRNNLLQENRQ  271 (475)
Q Consensus       193 a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~Eik-sLqeEVkeLEesr~eL~kEIqq  271 (475)
                      ..+...-.-+....+.+.+.+..|..++-.|...=|.   +|=+|...|+....++. ..++.+..+-.-.......+..
T Consensus       340 d~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~---qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~  416 (531)
T PF15450_consen  340 DLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDL---QEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKE  416 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444445555555566666665555443222   34455556655555444 3444455555555556666666


Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhh-------hhhhchHHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHhhh
Q 011909          272 LKENVSSLRSQLSSDESKKLQHATS-------EQKDFSTQIEAAGALIDKLITENIELVE-----KVNDLSVKLD  334 (475)
Q Consensus       272 LReqLdelqseiqsLE~Eeal~e~e-------En~~Ls~E~E~l~s~vekL~~enq~LeE-----e~neL~~~l~  334 (475)
                      ++++++++-.++..+...+.+..-.       |-+....++..+-..|-.+....|-|.|     +.++...+|+
T Consensus       417 v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg~l~  491 (531)
T PF15450_consen  417 VQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQGKLA  491 (531)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHHHHH
Confidence            7777776666666666665555422       3344444555555555555555555544     4444444443

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=88.63  E-value=26  Score=34.46  Aligned_cols=9  Identities=44%  Similarity=0.578  Sum_probs=4.0

Q ss_pred             HHHHHHHHH
Q 011909          261 SRNNLLQEN  269 (475)
Q Consensus       261 sr~eL~kEI  269 (475)
                      .+..+-.++
T Consensus       145 ~r~~l~~~l  153 (302)
T PF10186_consen  145 RRRQLIQEL  153 (302)
T ss_pred             HHHHHHHHH
Confidence            444444444

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=88.44  E-value=42  Score=36.58  Aligned_cols=105  Identities=13%  Similarity=0.093  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHH----HHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909          124 LYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLH----IQREGGLEMNIANLQSEKEFWLQKEAALEQKI  199 (475)
Q Consensus       124 ~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~----~Qkea~Lee~I~qLq~EI~~~~qEla~L~pei  199 (475)
                      .+.+++..|.+++..|-.+-+.+.  .+.+|..-+-.+.+++-.    ..-..+.+.=-+++..+..+...++..|..+|
T Consensus       360 qHqRELekLreEKdrLLAEETAAT--iSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQY  437 (593)
T KOG4807|consen  360 QHQRELEKLREEKDRLLAEETAAT--ISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQY  437 (593)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666666666555443221  122222222222221111    11122334445678888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 011909          200 SQLRDESAALNMKRASLEERLKLLEADKDSW  230 (475)
Q Consensus       200 ekL~~Ee~~LkqkLasLEeKl~~LkaERD~W  230 (475)
                      .+-==+++.|.+.+..-...+++-+.|...+
T Consensus       438 SQKCLEnahLaqalEaerqaLRqCQrEnQEL  468 (593)
T KOG4807|consen  438 SQKCLENAHLAQALEAERQALRQCQRENQEL  468 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999998887777777777766553

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.34  E-value=4.3  Score=34.00  Aligned_cols=46  Identities=28%  Similarity=0.360  Sum_probs=22.3

Q ss_pred             HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          240 TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       240 ~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      .|..++..+.+|..++..+...+..|..++.+|+..-..|+.++.+
T Consensus        26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrs   71 (79)
T COG3074          26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRA   71 (79)
T ss_pred             HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444444445555555555555555555555555555444433

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=88.31  E-value=39  Score=39.48  Aligned_cols=19  Identities=26%  Similarity=0.260  Sum_probs=9.1

Q ss_pred             HHHHHHhHHHHHHHHHHHH
Q 011909          304 QIEAAGALIDKLITENIEL  322 (475)
Q Consensus       304 E~E~l~s~vekL~~enq~L  322 (475)
                      |+.||..+---|+...+.|
T Consensus       537 Ei~RL~eLtR~LQ~Sma~l  555 (861)
T PF15254_consen  537 EIERLRELTRTLQNSMAKL  555 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4445555444455444443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=88.26  E-value=75  Score=39.31  Aligned_cols=33  Identities=15%  Similarity=0.202  Sum_probs=14.9

Q ss_pred             HHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHH
Q 011909           89 ILEETVKHLRNERESHIQKEATLEGTVQQLQNE  121 (475)
Q Consensus        89 ~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~E  121 (475)
                      -+++.|..|..+.+.+-..=+.+...+..|..+
T Consensus       746 el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e  778 (1353)
T TIGR02680       746 ELDARLAAVDDELAELARELRALGARQRALADE  778 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445444444444444444444444444444

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PRK10698 phage shock protein PspA; Provisional

Probab=88.24  E-value=28  Score=34.37  Aligned_cols=53  Identities=11%  Similarity=0.105  Sum_probs=38.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909          108 EATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQL  160 (475)
Q Consensus       108 e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdL  160 (475)
                      +.+|.-.|+++++.+...++.++..-...+.++.+...+-...+..+.+..--
T Consensus        26 ~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~A   78 (222)
T PRK10698         26 QKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELA   78 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777888888888888888777777777777777766666666666555443

>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=88.11  E-value=34  Score=39.28  Aligned_cols=132  Identities=19%  Similarity=0.223  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhh-hhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 011909          197 QKISQLRDESAALNMKRASLEERLKLLEADKDSWT-QMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKEN  275 (475)
Q Consensus       197 peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WL-kkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReq  275 (475)
                      -.+++.....+.|.+.++..++++..|-.....-. ..++ +.+.-..+...+..|...+..|.....+...++..+..+
T Consensus        54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~-~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~q  132 (660)
T KOG4302|consen   54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEI-SDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQ  132 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccc-ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666777777788888888888887722222110 0000 011112555555666666666666666777777777777


Q ss_pred             HHHHHhhhhhhhhhhhhhh--hhhhhhch-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 011909          276 VSSLRSQLSSDESKKLQHA--TSEQKDFS-TQIEAAGALIDKLITENIELVEKVNDLSVK  332 (475)
Q Consensus       276 LdelqseiqsLE~Eeal~e--~eEn~~Ls-~E~E~l~s~vekL~~enq~LeEe~neL~~~  332 (475)
                      +.+++..+..-   +.+..  .-+..+|+ ..+|.+..-|..|+.+...=-++|.++...
T Consensus       133 ie~l~~~l~g~---~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~  189 (660)
T KOG4302|consen  133 IEKLCEELGGP---EDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEE  189 (660)
T ss_pred             HHHHHHHhcCC---ccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777776662   21111  34667777 788888888888877776555555555443

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=87.90  E-value=5.2  Score=32.93  Aligned_cols=42  Identities=17%  Similarity=0.198  Sum_probs=21.2

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011909          174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRAS  215 (475)
Q Consensus       174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLas  215 (475)
                      .+..++.|..|-+.....+...-.++.+|+.++..+++.+..
T Consensus        24 ~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~   65 (69)
T PF14197_consen   24 HEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE   65 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444445555555555555555555555555443

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.87  E-value=11  Score=37.76  Aligned_cols=71  Identities=17%  Similarity=0.225  Sum_probs=41.8

Q ss_pred             HHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011909          219 RLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  289 (475)
Q Consensus       219 Kl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~E  289 (475)
                      -|..+..+++.++..-...-+.|...+.+|..|..-|..++..+......+..+.+.+..+..++..+..+
T Consensus        33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e  103 (230)
T PF10146_consen   33 CLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE  103 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444666666444444666666666666666666666666666666666666666555555555554444

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=87.87  E-value=5.1  Score=34.12  Aligned_cols=64  Identities=19%  Similarity=0.312  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH-------hhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909          137 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR-------EGGLEMNIANLQSEKEFWLQKEAALEQKIS  200 (475)
Q Consensus       137 kQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qk-------ea~Lee~I~qLq~EI~~~~qEla~L~peie  200 (475)
                      .+|+.....++-.++-+...|.+|+..+....+.       +..|..+..+|+.+-..|...+..|..+++
T Consensus         7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~   77 (79)
T PRK15422          7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   77 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3455555555555555555666665555544443       334666667777777777777766665554

>PRK10698 phage shock protein PspA; Provisional

Probab=87.73  E-value=30  Score=34.15  Aligned_cols=171  Identities=16%  Similarity=0.199  Sum_probs=111.2

Q ss_pred             HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011909           90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ  169 (475)
Q Consensus        90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Q  169 (475)
                      +++++..++...-..|-.+..++..+.+++..+..+..+-...-.  +.=++=-..+|..+...+..+..|+........
T Consensus        36 m~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~--~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~  113 (222)
T PRK10698         36 MEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR--KEKEDLARAALIEKQKLTDLIATLEHEVTLVDE  113 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356666666666667777777888888888887766654433111  011222345677788888899999999888888


Q ss_pred             HhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHHHHHHHhhhhhhhhhhchH
Q 011909          170 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA-----------LNMKRASLEERLKLLEADKDSWTQMESVSK  238 (475)
Q Consensus       170 kea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~-----------LkqkLasLEeKl~~LkaERD~WLkkEIsLk  238 (475)
                      .-..|...+..|+..|..+..+...|..++.........           -...+..+|.++..+.+.=+..   ..   
T Consensus       114 ~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~---~~---  187 (222)
T PRK10698        114 TLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESH---GF---  187 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHh---hc---
Confidence            888888899999999999888888888888777664332           2235666777777765544431   00   


Q ss_pred             HHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909          239 ETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV  276 (475)
Q Consensus       239 e~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqL  276 (475)
                        .     .-.+|..+...|+. ......|+..|+.++
T Consensus       188 --~-----~~~~l~~e~~~le~-~~~ve~ELa~LK~~~  217 (222)
T PRK10698        188 --G-----KQKSLDQQFAELKA-DDEISEQLAALKAKM  217 (222)
T ss_pred             --c-----CCCCHHHHHHHhhc-cchHHHHHHHHHHHh
Confidence              0     01234555555543 345777777777655

>COG5293 Predicted ATPase [General function prediction only]

Probab=87.67  E-value=50  Score=36.63  Aligned_cols=85  Identities=9%  Similarity=0.102  Sum_probs=62.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHH---------HHHHHHHHHHHHHHHH
Q 011909          207 AALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEE---------SRNNLLQENRQLKENV  276 (475)
Q Consensus       207 ~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEe---------sr~eL~kEIqqLReqL  276 (475)
                      .+.++.+..+++=-+.+-++|-.+|+.|| .++..+...+..+..|.++..++=.         ...-+-+++-.++-.|
T Consensus       316 g~Vkk~~e~v~~F~r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~el  395 (591)
T COG5293         316 GQVKKDFEHVIAFNRAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGEL  395 (591)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhH
Confidence            35667777888888888999999999999 9999999999999999988877644         2233555555666666


Q ss_pred             HHHHhhhhhhhhhhh
Q 011909          277 SSLRSQLSSDESKKL  291 (475)
Q Consensus       277 delqseiqsLE~Eea  291 (475)
                      .+++-++..+.+-.+
T Consensus       396 ae~~~rie~l~k~~~  410 (591)
T COG5293         396 AELEYRIEPLRKLHA  410 (591)
T ss_pred             HHHHHhhhHHHHHHH
Confidence            666555555554444

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=87.61  E-value=18  Score=31.28  Aligned_cols=88  Identities=17%  Similarity=0.205  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011909          190 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQEN  269 (475)
Q Consensus       190 qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEI  269 (475)
                      .|+-.|+..|..+..........+..+|.++..|.+|+..-=++--.+.+...++..++..|..++.--.+....|..--
T Consensus         3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E   82 (96)
T PF08647_consen    3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETE   82 (96)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            46677778888888888888888888888888887776663223226666666666666666666665555555555433


Q ss_pred             HHHHHHHH
Q 011909          270 RQLKENVS  277 (475)
Q Consensus       270 qqLReqLd  277 (475)
                      ..++..|.
T Consensus        83 ~~~~~~l~   90 (96)
T PF08647_consen   83 KEFVRKLK   90 (96)
T ss_pred             HHHHHHHH
Confidence            33433333

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=87.46  E-value=82  Score=38.85  Aligned_cols=194  Identities=16%  Similarity=0.169  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909          141 RQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL  220 (475)
Q Consensus       141 ~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl  220 (475)
                      .+....+...-.+-...+.+........+....+++.+..|+.+|....+++..+.+.+.-+.............+..+.
T Consensus       850 ~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~  929 (1294)
T KOG0962|consen  850 IEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNER  929 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHh
Confidence            33444444455555556666666666777777777888888888888777777777666655555444433333333331


Q ss_pred             ---HHH-------HHhhhhhhhhhhchH-------------HHHhhhHHHHHHHHHHHHHhHHH---------HHHHHHH
Q 011909          221 ---KLL-------EADKDSWTQMESVSK-------------ETIAGLSVDITQLRMQVVELEES---------RNNLLQE  268 (475)
Q Consensus       221 ---~~L-------kaERD~WLkkEIsLk-------------e~ISsl~~EiksLqeEVkeLEes---------r~eL~kE  268 (475)
                         ..+       ..++.+.|+.=..+.             ..+......+..+...+.+....         ...=+-+
T Consensus       930 ~~~~~~aqk~~~~ine~~s~l~~~~~~~~~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~ 1009 (1294)
T KOG0962|consen  930 NTSEKLAQKKRNDINEKVSLLHQIYKLNECFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLT 1009 (1294)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence               111       111111111111000             01111111122222222222111         1111112


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhhhh----hhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909          269 NRQLKENVSSLRSQLSSDESKKLQHA----TSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSVKLD  334 (475)
Q Consensus       269 IqqLReqLdelqseiqsLE~Eeal~e----~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~  334 (475)
                      ...|..++..+.+++..+....+-..    .++-..|..+.+++.+.-..+.-++.+++..+.-+..+|.
T Consensus      1010 ~~~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence            22333333344444444333332222    3577788888888888888888888888888888877775

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=87.28  E-value=12  Score=33.96  Aligned_cols=42  Identities=21%  Similarity=0.321  Sum_probs=20.8

Q ss_pred             hHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 011909          237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSS  278 (475)
Q Consensus       237 Lke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLde  278 (475)
                      |...|..+..++..++.++..|+..+..+..||-.|-...+.
T Consensus        21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~   62 (120)
T PF12325_consen   21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEE   62 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555544444443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=86.96  E-value=19  Score=39.21  Aligned_cols=72  Identities=17%  Similarity=0.204  Sum_probs=48.8

Q ss_pred             HHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909          149 KEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL  220 (475)
Q Consensus       149 kkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl  220 (475)
                      .++..+.++.+|..+.....++...+-+++.-++.+......++...+.++..|++++..+.......++.-
T Consensus         7 ~~s~~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~   78 (459)
T KOG0288|consen    7 QKSENDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE   78 (459)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566666666666666666677777777777777777777777778888888777776666544433

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=86.70  E-value=4.9  Score=44.06  Aligned_cols=84  Identities=20%  Similarity=0.347  Sum_probs=54.2

Q ss_pred             hHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHH
Q 011909          237 SKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLI  316 (475)
Q Consensus       237 Lke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~  316 (475)
                      -...|..+-...+.++.++..|......|.+|+..|+.+......++++              .|..+...+....++|.
T Consensus        57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~--------------av~~~~~~~~~~~~ql~  122 (472)
T TIGR03752        57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQ--------------AVQSETQELTKEIEQLK  122 (472)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH--------------HHHhhhHHHHHHHHHHH
Confidence            3456777777888888888888888888888887777766666555555              23333333444444555


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 011909          317 TENIELVEKVNDLSVKLD  334 (475)
Q Consensus       317 ~enq~LeEe~neL~~~l~  334 (475)
                      .+.++|...+.+|..+|+
T Consensus       123 ~~~~~~~~~l~~l~~~l~  140 (472)
T TIGR03752       123 SERQQLQGLIDQLQRRLA  140 (472)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            555566666666666554

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=86.53  E-value=29  Score=32.62  Aligned_cols=132  Identities=22%  Similarity=0.183  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 011909          197 QKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENV  276 (475)
Q Consensus       197 peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqL  276 (475)
                      -+|++|+-++..|..++.+-...+..|+.---.-++.=...++.+.....++..++.++...+.....+..++...+...
T Consensus        42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r  121 (177)
T PF13870_consen   42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER  121 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777666666666533222211111144444444444444444444444444444444444444444


Q ss_pred             HHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          277 SSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIELVEKVNDLSV  331 (475)
Q Consensus       277 delqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~LeEe~neL~~  331 (475)
                      +.++.....|...-.+.   ..-.|-...+..-..++.+...-..|+.++..|..
T Consensus       122 ~k~~~~~~~l~~~~~~~---~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~  173 (177)
T PF13870_consen  122 DKLRKQNKKLRQQGGLL---GVPALLRDYDKTKEEVEELRKEIKELERKVEILEM  173 (177)
T ss_pred             HHHHHHHHHHHHhcCCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444433333222211   11112222333444455555555555555555544

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=86.45  E-value=82  Score=37.82  Aligned_cols=38  Identities=18%  Similarity=0.194  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhh
Q 011909          195 LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQ  232 (475)
Q Consensus       195 L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLk  232 (475)
                      ....+..+...-..+...+..+...+..++..-..||.
T Consensus       722 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~  759 (1047)
T PRK10246        722 VHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQFDTALQ  759 (1047)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444455555555555555555554

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=86.11  E-value=45  Score=34.45  Aligned_cols=82  Identities=22%  Similarity=0.226  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHhHHHHH
Q 011909           82 LQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL---EET-IQQLQRQNDLRMQKEATLEETI  157 (475)
Q Consensus        82 ~~~~~~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L---~et-ikQLe~d~~~~LQkkA~lE~kI  157 (475)
                      +-++-..-|+++--.|.+=-+.-..-|+.|+-.+.+++..+..+.....-|   .++ +..++.++-+..|.+..+|..+
T Consensus        21 l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddl  100 (333)
T KOG1853|consen   21 LHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDL  100 (333)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444445555444444444444555666666666666555444222221   122 2455666666666666666666


Q ss_pred             HHHHhh
Q 011909          158 KQLRNQ  163 (475)
Q Consensus       158 KdLe~~  163 (475)
                      .+++..
T Consensus       101 sqt~ai  106 (333)
T KOG1853|consen  101 SQTHAI  106 (333)
T ss_pred             HHHHHH
Confidence            655443

>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]

Probab=85.74  E-value=36  Score=37.24  Aligned_cols=74  Identities=19%  Similarity=0.238  Sum_probs=43.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHH
Q 011909          179 ANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLR  252 (475)
Q Consensus       179 ~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLq  252 (475)
                      ..+..+.+....++..+..+++.+..++..+...+.+++.+-.+|-.+.+.+.+.-.....++-.++.++.+|.
T Consensus       179 ~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle  252 (447)
T KOG2751|consen  179 EDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLE  252 (447)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Confidence            34444555556666677777778888888888888888777777755555544443333333333333333333

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=85.71  E-value=81  Score=37.07  Aligned_cols=10  Identities=30%  Similarity=0.660  Sum_probs=3.9

Q ss_pred             HHHHHHHhhh
Q 011909           89 ILEETVKHLR   98 (475)
Q Consensus        89 ~~eeti~~l~   98 (475)
                      .+-+.++.++
T Consensus       175 ~l~e~~~~~~  184 (908)
T COG0419         175 LLKEVIKEAK  184 (908)
T ss_pred             HHHHHHHHHH
Confidence            3334444433

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.37  E-value=13  Score=31.24  Aligned_cols=22  Identities=18%  Similarity=0.371  Sum_probs=8.8

Q ss_pred             HHHHHHHHhHHHHHHHHHhhhh
Q 011909          144 DLRMQKEATLEETIKQLRNQND  165 (475)
Q Consensus       144 ~~~LQkkA~lE~kIKdLe~~~~  165 (475)
                      ..++-.++-+...|.+|+.++.
T Consensus        14 qqAvdTI~LLQmEieELKEknn   35 (79)
T COG3074          14 QQAIDTITLLQMEIEELKEKNN   35 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            3333333444444444444433

>PF15450 DUF4631: Domain of unknown function (DUF4631)

Probab=85.32  E-value=69  Score=35.89  Aligned_cols=160  Identities=17%  Similarity=0.251  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 011909          139 LQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKE--------AALEQKISQLRDESAALN  210 (475)
Q Consensus       139 Le~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEl--------a~L~peiekL~~Ee~~Lk  210 (475)
                      |+.-...+++.+..+..+|--|...++..++   .|..+|..+++++.....+.        ..+...+..+.+..+.+.
T Consensus       349 le~sv~~l~~~lkDLd~~~~aLs~rld~qEq---tL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~~l~~v~eKVd~Lp  425 (531)
T PF15450_consen  349 LEDSVAELMRQLKDLDDHILALSWRLDLQEQ---TLNLRLSEAKNEWESDERKSLEKLDQWQNEMEKHLKEVQEKVDSLP  425 (531)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3344444445555555555555555444333   36666666666554433322        223344445555566667


Q ss_pred             HHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011909          211 MKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK  289 (475)
Q Consensus       211 qkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~E  289 (475)
                      +.+..+..+....+++=|.-+-.|- .....|..+..+++.+..+++-+.+....  ..|+..+-+|.  ..++..|++.
T Consensus       426 qqI~~vs~Kc~~~Ksd~d~kIdtE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~--rkiaeiqg~l~--~~qi~kle~s  501 (531)
T PF15450_consen  426 QQIEEVSDKCDLHKSDSDTKIDTEGKAREREVGAVRQELATLLSSVQLLKEDNPG--RKIAEIQGKLA--TNQIMKLENS  501 (531)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChh--hhHHHHHHHHH--HHHHHHHHHH
Confidence            7777777777777887777777777 77788888888888888888877765544  23666666666  5556665555


Q ss_pred             hhhhhhhhhhhchHHH
Q 011909          290 KLQHATSEQKDFSTQI  305 (475)
Q Consensus       290 eal~e~eEn~~Ls~E~  305 (475)
                      +.-.-+-=|.++++|+
T Consensus       502 iq~nKtiqn~kfntEt  517 (531)
T PF15450_consen  502 IQTNKTIQNLKFNTET  517 (531)
T ss_pred             HHHHHHHHhcccchHH
Confidence            5333344566677666

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.23  E-value=42  Score=33.30  Aligned_cols=6  Identities=33%  Similarity=0.506  Sum_probs=2.3

Q ss_pred             cCCCCC
Q 011909          442 PLTDAP  447 (475)
Q Consensus       442 p~~dap  447 (475)
                      -|..-|
T Consensus       239 ~l~~LP  244 (251)
T PF11932_consen  239 ELLKLP  244 (251)
T ss_pred             HHhccC
Confidence            333333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=85.07  E-value=66  Score=35.47  Aligned_cols=43  Identities=12%  Similarity=0.135  Sum_probs=23.9

Q ss_pred             HHHHhhhHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHH
Q 011909          238 KETIAGLSVDITQLRMQVV----ELEESRNNLLQENRQLKENVSSLR  280 (475)
Q Consensus       238 ke~ISsl~~EiksLqeEVk----eLEesr~eL~kEIqqLReqLdelq  280 (475)
                      +..+..+..++..++.+..    .+.........|++.|+.++....
T Consensus       336 e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~  382 (511)
T PF09787_consen  336 EAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARA  382 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444555555554444443    233344456777888887777654

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=84.97  E-value=13  Score=42.09  Aligned_cols=46  Identities=20%  Similarity=0.381  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909          184 EKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  229 (475)
Q Consensus       184 EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~  229 (475)
                      ++.+...++..+...+++|..++..|+..+..+...+..|.++.+.
T Consensus       416 ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~  461 (652)
T COG2433         416 EITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELER  461 (652)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444444444444444444444333

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=84.90  E-value=29  Score=31.26  Aligned_cols=38  Identities=11%  Similarity=0.232  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          113 GTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKE  150 (475)
Q Consensus       113 e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkk  150 (475)
                      ..+++|...+..+...+..|...+.+|......+...+
T Consensus         6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~   43 (140)
T PRK03947          6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAK   43 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666677777777777766666666554444

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=84.48  E-value=4.7  Score=37.57  Aligned_cols=24  Identities=42%  Similarity=0.551  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH
Q 011909          193 AALEQKISQLRDESAALNMKRASL  216 (475)
Q Consensus       193 a~L~peiekL~~Ee~~LkqkLasL  216 (475)
                      ..|..++..|.++...++.....+
T Consensus        75 ~~ld~ei~~L~~el~~l~~~~k~l   98 (169)
T PF07106_consen   75 AELDAEIKELREELAELKKEVKSL   98 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444333333333333333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=84.19  E-value=54  Score=36.23  Aligned_cols=159  Identities=13%  Similarity=0.088  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHH
Q 011909          118 LQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQ  197 (475)
Q Consensus       118 Lq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~p  197 (475)
                      +++|+.++..++..-.+++..++.+...+-...-.+|..+++|++.          ..++|..+-.+|+.|..-.-.+..
T Consensus       307 s~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~----------~~~q~~~~h~~ka~~~~~~~~l~~  376 (554)
T KOG4677|consen  307 SRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESA----------GQTQIFRKHPRKASILNMPLVLTL  376 (554)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----------hHHHHHHhhhHhhhhhhchHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHH
Q 011909          198 KISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDIT--QLRMQVVELEESRNNLLQENRQLKE  274 (475)
Q Consensus       198 eiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~Eik--sLqeEVkeLEesr~eL~kEIqqLRe  274 (475)
                      .|+++.-+....++-+--.--+.+           .=| +-+..|..+...+.  .+..++..|+....+|-.-+-+-+.
T Consensus       377 ~~ec~~~e~e~~~~~~~r~~~~~q-----------ski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~  445 (554)
T KOG4677|consen  377 FYECFYHETEAEGTFSSRVNLKKQ-----------SKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQI  445 (554)
T ss_pred             HHHHHHHHHHHhhhhhhhccchhh-----------ccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHH


Q ss_pred             HHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHH
Q 011909          275 NVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALI  312 (475)
Q Consensus       275 qLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~v  312 (475)
                      +|+.+               ++++..|+.++|+|..-+
T Consensus       446 ~le~v---------------~~~~~~ln~~lerLq~~~  468 (554)
T KOG4677|consen  446 GLERV---------------VEILHKLNAPLERLQEYV  468 (554)
T ss_pred             HHHHH---------------HHHHhhhhhhHHHHHHHh

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=84.12  E-value=14  Score=41.79  Aligned_cols=89  Identities=18%  Similarity=0.183  Sum_probs=39.0

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh--hhhhhhhhhchHHHHhhhHHHHHHHHHHH
Q 011909          178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD--KDSWTQMESVSKETIAGLSVDITQLRMQV  255 (475)
Q Consensus       178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaE--RD~WLkkEIsLke~ISsl~~EiksLqeEV  255 (475)
                      +..+..++......+..++.+...|..+...++..+..|+.++..+..+  -+.|...||      ..+...|..|+.++
T Consensus       417 i~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei------~~~~~~I~~L~~~L  490 (652)
T COG2433         417 ITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREI------RARDRRIERLEKEL  490 (652)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444445555544221  223344444      33333444444444


Q ss_pred             HHhHHHHHHHHHHHHHH
Q 011909          256 VELEESRNNLLQENRQL  272 (475)
Q Consensus       256 keLEesr~eL~kEIqqL  272 (475)
                      .+-......|..++..+
T Consensus       491 ~e~~~~ve~L~~~l~~l  507 (652)
T COG2433         491 EEKKKRVEELERKLAEL  507 (652)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            44444444444444444

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=83.99  E-value=66  Score=36.91  Aligned_cols=53  Identities=19%  Similarity=0.171  Sum_probs=33.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011909          110 TLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQN  164 (475)
Q Consensus       110 ~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~  164 (475)
                      ++...+..+-+.  .+..+......++.-|+.+...+-++....|..+.+|+..+
T Consensus       245 ilN~la~~Yi~~--~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~  297 (726)
T PRK09841        245 ILNSIANNYLQQ--NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR  297 (726)
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344444443333  33444555566677777777777777777888888888776

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=83.97  E-value=9.7  Score=31.29  Aligned_cols=48  Identities=27%  Similarity=0.373  Sum_probs=36.6

Q ss_pred             HhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909          241 IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES  288 (475)
Q Consensus       241 ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~  288 (475)
                      -..+..++..|+.++..+..++..|...+..-+.+++.+-+++.+++.
T Consensus        16 ~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq   63 (65)
T TIGR02449        16 LERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            344566677778888888888888888888888888888888777654

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.84  E-value=83  Score=35.63  Aligned_cols=119  Identities=13%  Similarity=0.223  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHhhhcch-----------hhhhHHHhh----------HHHHHHHH-----------HHHHHHHHHHHH
Q 011909           83 QREAMAILEETVKHLRNER-----------ESHIQKEAT----------LEGTVQQL-----------QNECDLYKEKVA  130 (475)
Q Consensus        83 ~~~~~~~~eeti~~l~~e~-----------~~~~~~e~~----------l~e~IkqL-----------q~El~~lk~kl~  130 (475)
                      |+-.++.=+|.||+|-+..           .+|.++-..          .+.+|..|           .++|+.++.+.+
T Consensus       262 qkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~IerLkeqr~rderE~~EeIe~~~ke~k  341 (654)
T KOG4809|consen  262 QKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVERIIERLKEQRERDERERLEEIESFRKENK  341 (654)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHHHHHHhcchhhhhHHHHHHHHHHHHHHHH
Confidence            4555666788999997765           233333111          34555554           355666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          131 TLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA  208 (475)
Q Consensus       131 ~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~  208 (475)
                      -|.+-+.+|+.+       .+..+..+.+|++...+....-..+..+|+.+.--+++...+...|..++.+.++....
T Consensus       342 dLkEkv~~lq~~-------l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dd  412 (654)
T KOG4809|consen  342 DLKEKVNALQAE-------LTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDD  412 (654)
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence            666666666654       44556667777777777666666677778888888888888888888877777665543

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=83.61  E-value=33  Score=30.89  Aligned_cols=43  Identities=26%  Similarity=0.251  Sum_probs=19.6

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909          174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  216 (475)
Q Consensus       174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL  216 (475)
                      +.+.+.-|+..++.....+..+...+..+.+.-..+.+.+..+
T Consensus        92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l  134 (140)
T PRK03947         92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQL  134 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444444444333

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=83.60  E-value=1.8  Score=45.41  Aligned_cols=99  Identities=20%  Similarity=0.213  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 011909          192 EAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENR  270 (475)
Q Consensus       192 la~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIq  270 (475)
                      ++.|...+..+...-+.+.-.|..+...+..|+..=+. +...| ++...+..+...+..|+..+..++....++..-+.
T Consensus        58 iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~-lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVS  136 (326)
T PF04582_consen   58 ISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSS-LSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVS  136 (326)
T ss_dssp             -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhh
Confidence            33333333333333333333334444444444333333 34555 66667777777777777777777777777777776


Q ss_pred             HHHHHHHHHHhhhhhhhhhhh
Q 011909          271 QLKENVSSLRSQLSSDESKKL  291 (475)
Q Consensus       271 qLReqLdelqseiqsLE~Eea  291 (475)
                      .+--.|..++.++..||....
T Consensus       137 t~aL~ItdLe~RV~~LEs~~s  157 (326)
T PF04582_consen  137 TQALNITDLESRVKALESGSS  157 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTT
T ss_pred             hhcchHhhHHHHHHHHhcCCC
Confidence            666666777777777666543

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>PF15254 CCDC14: Coiled-coil domain-containing protein 14

Probab=83.34  E-value=43  Score=39.12  Aligned_cols=37  Identities=11%  Similarity=0.143  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909          187 FWLQKEAALEQKISQLRDESAALNMKRASLEERLKLL  223 (475)
Q Consensus       187 ~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~L  223 (475)
                      .|.-+..+|+-++++.......++.+|...+.+=..|
T Consensus       491 ~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL  527 (861)
T PF15254_consen  491 QFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQIL  527 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHh
Confidence            3444444555555555555555555555554444444

>PLN02939 transferase, transferring glycosyl groups

Probab=83.07  E-value=1.2e+02  Score=36.70  Aligned_cols=196  Identities=17%  Similarity=0.187  Sum_probs=104.9

Q ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhh---hhHHH
Q 011909          101 RESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREG---GLEMN  177 (475)
Q Consensus       101 ~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea---~Lee~  177 (475)
                      --+.+|-|.+. ..|+.-+.-|-.+.+--...-++....-.+.+.+-.++..+|.++.+-........|-..   .++++
T Consensus       124 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (977)
T PLN02939        124 QLSDFQLEDLV-GMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQ  202 (977)
T ss_pred             ccccccHHHHH-HHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHH
Confidence            34567766654 556665555554444444444444555555555666666666666665555444444433   36777


Q ss_pred             HHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHH
Q 011909          178 IANLQSEKEFWLQKE----AALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM  253 (475)
Q Consensus       178 I~qLq~EI~~~~qEl----a~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqe  253 (475)
                      +..|+.++....--.    ..+..++.-|+.+|..|+.-+..+.+++...+           ...+.+-.+..+...|..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~  271 (977)
T PLN02939        203 LEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVA-----------ETEERVFKLEKERSLLDA  271 (977)
T ss_pred             HHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHH
Confidence            888888876543321    23566777777777777766666655554331           222233333333333333


Q ss_pred             HHHHhHHHHH---------------HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHH
Q 011909          254 QVVELEESRN---------------NLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALID  313 (475)
Q Consensus       254 EVkeLEesr~---------------eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~ve  313 (475)
                      -+.+||....               .|-..+..|+.-|+.+..     ..+.|......|++|...++.|.+.++
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (977)
T PLN02939        272 SLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATN-----QVEKAALVLDQNQDLRDKVDKLEASLK  341 (977)
T ss_pred             HHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            3333333221               233444444444443322     222344446789999999998876443

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=82.98  E-value=67  Score=33.92  Aligned_cols=43  Identities=23%  Similarity=0.213  Sum_probs=22.7

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909          178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL  220 (475)
Q Consensus       178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl  220 (475)
                      |..|+.++.....+++.+...|..-+-..-.++.+++.+...+
T Consensus       256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l  298 (444)
T TIGR03017       256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL  298 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence            4556666666666666665544444444444444444444443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=82.63  E-value=31  Score=29.78  Aligned_cols=89  Identities=17%  Similarity=0.181  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          128 KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESA  207 (475)
Q Consensus       128 kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~  207 (475)
                      ++..+....+.+...........+.+|.++..|.....-.-|+-.....-...+..++.....-++.-..-+.+|.+-+.
T Consensus         4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~   83 (96)
T PF08647_consen    4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEK   83 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34444444444555555555555555555555555544444444444434444444444433333434444444444444


Q ss_pred             HHHHHHHhH
Q 011909          208 ALNMKRASL  216 (475)
Q Consensus       208 ~LkqkLasL  216 (475)
                      .+...+..+
T Consensus        84 ~~~~~l~~~   92 (96)
T PF08647_consen   84 EFVRKLKNL   92 (96)
T ss_pred             HHHHHHHHh
Confidence            444444443

>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]

Probab=82.44  E-value=22  Score=34.67  Aligned_cols=85  Identities=13%  Similarity=0.169  Sum_probs=45.7

Q ss_pred             hhhhh-chHHHHhhhHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHH
Q 011909          231 TQMES-VSKETIAGLSVDITQLRMQVVELEES--RNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEA  307 (475)
Q Consensus       231 LkkEI-sLke~ISsl~~EiksLqeEVkeLEes--r~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~  307 (475)
                      |..+| .|++.+.++..++..+..+|.+|.+.  ..++.++|+.|+..+...+.++.+|..-.-..+-++.+-.-.+-++
T Consensus        84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~~y~~  163 (201)
T KOG4603|consen   84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYREYQK  163 (201)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence            44455 55555555555555555555555552  3445666666666666665555555544333333455555555566


Q ss_pred             HHhHHHHH
Q 011909          308 AGALIDKL  315 (475)
Q Consensus       308 l~s~vekL  315 (475)
                      .|....+-
T Consensus       164 ~~~~wrk~  171 (201)
T KOG4603|consen  164 YCKEWRKR  171 (201)
T ss_pred             HHHHHHHH
Confidence            66655543

>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]

Probab=82.32  E-value=1e+02  Score=35.56  Aligned_cols=107  Identities=21%  Similarity=0.193  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHH
Q 011909          181 LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEE  260 (475)
Q Consensus       181 Lq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEe  260 (475)
                      ++..+.........+..+|..|+.+-..++..+..+......+..+-...++ ++  ...++.+......|.... .-+.
T Consensus       225 ~~~~~~~l~~~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~-~~--~~~~~~L~~~~~~l~~~~-~e~~  300 (670)
T KOG0239|consen  225 LRRNIKPLEGLESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALK-ES--NTLQSDLESLEENLVEKK-KEKE  300 (670)
T ss_pred             HHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHH-HHHH
Confidence            3333444344444444444445444444444444444444444333333111 11  112444444444444444 4446


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011909          261 SRNNLLQENRQLKENVSSLRSQLSSDESKKL  291 (475)
Q Consensus       261 sr~eL~kEIqqLReqLdelqseiqsLE~Eea  291 (475)
                      .+..|..+|++|+-.|--.++-++-+..+..
T Consensus       301 ~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~  331 (670)
T KOG0239|consen  301 ERRKLHNEILELKGNIRVFCRVRPLLPSEKQ  331 (670)
T ss_pred             HHHHHHHHHHHhhcCceEEEEecCCCccccc
Confidence            7777888888887777765555555554444

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=82.29  E-value=47  Score=31.63  Aligned_cols=100  Identities=20%  Similarity=0.298  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHH
Q 011909          182 QSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEE  260 (475)
Q Consensus       182 q~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEe  260 (475)
                      +.+.....+++..++.++...-.+.+.|.......-.+|...-..-+.+...+| .--+.-..+...+..++.+...|..
T Consensus        26 R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~  105 (159)
T PF05384_consen   26 RQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRE  105 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444444444444444443334333444444556777 7777777888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHh
Q 011909          261 SRNNLLQENRQLKENVSSLRS  281 (475)
Q Consensus       261 sr~eL~kEIqqLReqLdelqs  281 (475)
                      .+..|...+..+..-+..+..
T Consensus       106 rRD~LErrl~~l~~tierAE~  126 (159)
T PF05384_consen  106 RRDELERRLRNLEETIERAEN  126 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888777776533

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF13166 AAA_13: AAA domain

Probab=82.24  E-value=92  Score=35.01  Aligned_cols=22  Identities=18%  Similarity=0.060  Sum_probs=10.6

Q ss_pred             CCCcCCCchhHH-HHHHhhcccc
Q 011909          445 DAPLIGAPFRLV-SFVAKYVSGA  466 (475)
Q Consensus       445 dap~igapfrli-sfva~yvsga  466 (475)
                      .+..||-.-|-| -...+|.-|.
T Consensus       632 ~~~~~~N~~RriLE~yf~~~~~~  654 (712)
T PF13166_consen  632 SAYNIPNVMRRILEAYFKFPGKI  654 (712)
T ss_pred             hHHhhHHHhHHHHHHHHhhCCCC
Confidence            455666555532 2225554443

>PF13514 AAA_27: AAA domain

Probab=82.19  E-value=1.2e+02  Score=36.45  Aligned_cols=16  Identities=38%  Similarity=0.223  Sum_probs=8.4

Q ss_pred             CceeeccCCCccchhh
Q 011909          411 GEIVQIPLDDKEVQDL  426 (475)
Q Consensus       411 ~eiv~~~ld~~~~~~~  426 (475)
                      ++-+||=|||.-|+=+
T Consensus      1050 ~~~lP~IlDD~fvnfD 1065 (1111)
T PF13514_consen 1050 GEPLPFILDDIFVNFD 1065 (1111)
T ss_pred             CCCCcEEeeCCccccC
Confidence            4445555666555433

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=81.89  E-value=8.2  Score=31.27  Aligned_cols=47  Identities=23%  Similarity=0.310  Sum_probs=39.2

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ  282 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqse  282 (475)
                      .+.+.|......+..+...+.+.+.....|..+|..|+..+++++++
T Consensus        15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~   61 (61)
T PF08826_consen   15 AIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR   61 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            45566777788888999999999999999999999999999988753

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=81.58  E-value=17  Score=31.87  Aligned_cols=42  Identities=19%  Similarity=0.318  Sum_probs=24.4

Q ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          244 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       244 l~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      ....+..|.+.+..++.....+.+.+..++.++.+++..+..
T Consensus        65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~  106 (110)
T TIGR02338        65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE  106 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555556666666666666666666666666555443

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PRK11519 tyrosine kinase; Provisional

Probab=81.01  E-value=65  Score=36.91  Aligned_cols=39  Identities=15%  Similarity=0.193  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011909          127 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQND  165 (475)
Q Consensus       127 ~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~  165 (475)
                      .+......++.-|+.+...+-++....|..+.+|+..+.
T Consensus       260 ~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~  298 (719)
T PRK11519        260 RKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD  298 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            444445556666666666666777777777777776654

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=80.51  E-value=85  Score=33.47  Aligned_cols=60  Identities=15%  Similarity=0.173  Sum_probs=42.7

Q ss_pred             HhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909          170 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDS  229 (475)
Q Consensus       170 kea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~  229 (475)
                      +|..+..++..+-.+......+++.+..+|..+..-...+...|+.+.+++.+.|.+=+.
T Consensus       260 REk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emee  319 (359)
T PF10498_consen  260 REKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEE  319 (359)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344466666677777777777778888888888888888877777777777776554443

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	475
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-18
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-17
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-12
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-09
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	8e-07
3ghg_C	411	Fibrinogen gamma chain; triple-stranded coiled coi	2e-04
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	5e-05
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	9e-05
2xs1_A	704	Programmed cell death 6-interacting protein; prote	4e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 87.6 bits (217), Expect = 2e-18
 Identities = 54/269 (20%), Positives = 103/269 (38%), Gaps = 8/269 (2%)

Query: 68   AESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKE 127
            AE+   AEAE   +        LEE +  +    E         E   QQLQ E    ++
Sbjct: 903  AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEE-------EEERSQQLQAEKKKMQQ 955

Query: 128  KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187
            ++  LEE +++ +        ++ T +  IK++ +   +   +   L      L+     
Sbjct: 956  QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015

Query: 188  WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD 247
                 A  E+K   L           + LE RLK  E  +    +++   +   + L   
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075

Query: 248  ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEA 307
            I +L+ Q+ EL+       +E +     +    SQ  ++  KK++   S   D    +E+
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQK-NNALKKIRELESHISDLQEDLES 1134

Query: 308  AGALIDKLITENIELVEKVNDLSVKLDRQ 336
              A  +K   +  +L E++  L  +L+  
Sbjct: 1135 EKAARNKAEKQKRDLSEELEALKTELEDT 1163

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 83.3 bits (206), Expect = 5e-17
 Identities = 54/273 (19%), Positives = 107/273 (39%), Gaps = 20/273 (7%)

Query: 68   AESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKE 127
               A L E E++H    E   +L+E ++          +    L    Q+L+      + 
Sbjct: 875  KAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEA 934

Query: 128  KVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF 187
            ++   EE  QQLQ +          +++ +  L  Q +         E     LQ EK  
Sbjct: 935  RIEEEEERSQQLQAEKK-------KMQQQMLDLEEQLEE-------EEAARQKLQLEKVT 980

Query: 188  WLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVD 247
               K   +E  I  + D++  L  +R  LEER+  L  +     +      +        
Sbjct: 981  ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040

Query: 248  ITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK------KLQHATSEQKDF 301
            I++L +++ + E+SR  L +  R+L+   S L  Q++  +++      +L     E +  
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100

Query: 302  STQIEAAGALIDKLITENIELVEKVNDLSVKLD 334
              ++E   +  +  + +  EL   ++DL   L+
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLE 1133

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 76.4 bits (188), Expect = 7e-15
 Identities = 42/240 (17%), Positives = 96/240 (40%)

Query: 61   DRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQN 120
            +  + +    A   + ++Q L   E +   E   + L+ E+ +   K   +E  +  +++
Sbjct: 938  EEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED 997

Query: 121  ECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN 180
            + +   ++   LEE +  L        +K   L +   +  +       R    E +   
Sbjct: 998  QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057

Query: 181  LQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKET 240
            L+  K     + + L ++I++L+ + A L  + A  EE L+   A  +  T  ++ + + 
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117

Query: 241  IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKD 300
            I  L   I+ L+  +   + +RN   ++ R L E + +L+++L                D
Sbjct: 1118 IRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 63.7 bits (155), Expect = 7e-11
 Identities = 29/232 (12%), Positives = 78/232 (33%), Gaps = 16/232 (6%)

Query: 69   ESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEK 128
            E A   + + + +     +  +E+ +  + ++     ++   LE  V  L       +EK
Sbjct: 967  EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026

Query: 129  VATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW 188
               L +   + +        +    E++ ++L             L   IA LQ++    
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL 1086

Query: 189  LQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDI 248
              + A  E+++            ++ +  ++++ LE+               I+ L  D+
Sbjct: 1087 KAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH--------------ISDLQEDL 1132

Query: 249  TQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLS--SDESKKLQHATSEQ 298
               +    + E+ + +L +E   LK  +       +   +          ++
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 41/235 (17%), Positives = 92/235 (39%), Gaps = 26/235 (11%)

Query: 1    MEDEKKKKRNKKKKNNKQTKTTTDDVAVGADPNHLINGQKDDVRSQASEPADIQNVQVDA 60
             E  ++K + +K   + + K   DD+ +  D N+ +  ++  +  + S+           
Sbjct: 967  EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD----------- 1015

Query: 61   DRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQN 120
                     + NLAE E +     +     E  +  L    +   +    LE   ++L+ 
Sbjct: 1016 --------LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067

Query: 121  ECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIAN 180
            E     E++A L+  I +L+ Q   + ++       ++   +Q +  +++   LE +I++
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127

Query: 181  LQSEKEFW------LQKE-AALEQKISQLRDESAALNMKRASLEERLKLLEADKD 228
            LQ + E         +K+   L +++  L+ E        A+ +E       D D
Sbjct: 1128 LQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 41/219 (18%), Positives = 81/219 (36%), Gaps = 22/219 (10%)

Query: 139  LQRQNDLRMQKEATLEETI-KQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA---- 193
            L R+   + Q++      I   +R+  ++       L   I  L        + +A    
Sbjct: 806  LARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEE 865

Query: 194  --ALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQL 251
                +++  +   E   L  K   L E   LL+    + T++ + ++E    L+    +L
Sbjct: 866  LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925

Query: 252  RMQVVEL-------EESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQ 304
               + E+       EE    L  E +++++ +  L  QL  +E    Q    E+     +
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL-EEEEAARQKLQLEKVTADGK 984

Query: 305  IEAAGA-------LIDKLITENIELVEKVNDLSVKLDRQ 336
            I+             +KL  E   L E+V+DL+  L  +
Sbjct: 985  IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 2e-12
 Identities = 69/469 (14%), Positives = 157/469 (33%), Gaps = 135/469 (28%)

Query: 52  DIQNVQVDADRHQSNGAESANLAEAERQHLLQR----EAMAILEETVKHLRNERESHIQK 107
           D ++VQ D  +        + L++ E  H++           L  T   L +++E  +QK
Sbjct: 34  DCKDVQ-DMPK--------SILSKEEIDHIIMSKDAVSGTLRLFWT---LLSKQEEMVQK 81

Query: 108 --EATLEGT----VQQLQNEC-------DLYKEKVATLEETIQQLQRQNDLRMQKEATLE 154
             E  L       +  ++ E         +Y E+   L    Q   + N  R+Q    L 
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 155 ETIKQLRNQNDLHIQREGG-----LEMNIAN---LQSEKE---FWL------QKEAALEQ 197
           + + +LR   ++ I    G     + +++     +Q + +   FWL        E  LE 
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 198 ----------KISQLRDESAALNMKRASLEERLKLLEADK----------DSWTQMESVS 237
                       +   D S+ + ++  S++  L+ L   K          +        +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ------N 255

Query: 238 KETIAGLSVDITQLRMQVVELEESRN----NLLQENRQLKENVSSLRSQLSSDESKKL-- 291
            +     + ++   ++ +     +R     + L        ++      L+ DE K L  
Sbjct: 256 AKAWN--AFNL-SCKILLT----TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 292 QHATSEQKDFSTQIEAAGALIDKLITE---------------NIELVEKVNDLSVK-LD- 334
           ++     +D   ++         +I E               N + +  + + S+  L+ 
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 335 ---RQS-VAAGL---SSAIGSDAVTALTSDTEPMSESSDNMSSLNNR--LETQGVVAVKE 385
              R+      +   S+ I +  ++ +  D    S+    ++ L+    +E Q     KE
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-SDVMVVVNKLHKYSLVEKQP----KE 423

Query: 386 DRNGINGVHADPPPLVLSSSEAEYSGEIVQIPLDDKEVQDLELQVVESY 434
               I  ++ +                 +++ L+++    L   +V+ Y
Sbjct: 424 STISIPSIYLE-----------------LKVKLENE--YALHRSIVDHY 453

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 22/230 (9%)

Query: 56   VQVDADRHQSNGAESANLAEAERQHLLQREAMAILEETVKHLRNERESHIQKE-ATLEGT 114
            +Q       +       L          R  MA  E     +        +K    LE  
Sbjct: 870  IQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENK 929

Query: 115  VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGL 174
            + QLQ + D   ++  +L E +  L+       +K  +  E ++    +      R   L
Sbjct: 930  IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989

Query: 175  EMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQME 234
            +  IA L+ E      ++  +E+   + + E        + L+E+  LL+ +K+   +  
Sbjct: 990  QEEIAKLRKELHQTQTEKKTIEEWADKYKHE---TEQLVSELKEQNTLLKTEKEELNR-- 1044

Query: 235  SVSKETIAGLSVDITQLRMQVVELEESRNNLLQ-ENRQLKENVSSLRSQL 283
                           ++  Q  E+ E+    L  E +QL+ +++  R + 
Sbjct: 1045 ---------------RIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 43/235 (18%), Positives = 85/235 (36%), Gaps = 15/235 (6%)

Query: 73   LAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL 132
            L   + Q +L+     I+++ V+        H   +A +      LQ     Y+  +A  
Sbjct: 853  LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY-----LQCC---YRRMMAKR 904

Query: 133  E-ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQK 191
            E + ++   R  +   +    LE  I QL+ + D   +    L   + NL+       +K
Sbjct: 905  ELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964

Query: 192  EAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQL 251
              +  +++    +E+     +  SL+E +  L  +       +   +E       +  QL
Sbjct: 965  LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024

Query: 252  RMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIE 306
               V EL+E    L  E  +L   +     +++    KKL     E K     + 
Sbjct: 1025 ---VSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV---EETKQLELDLN 1073

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 44/274 (16%), Positives = 93/274 (33%), Gaps = 21/274 (7%)

Query: 78   RQHLLQREAMAILEETVKHLRNERESH---IQKEATLEGTVQQLQNECDLYKEKVATLEE 134
                L+R   AI+ +  + +   R+ +         L+  ++                  
Sbjct: 809  YATFLRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSI 868

Query: 135  TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAA 194
             IQ+  R    R+    TL+  +        +  +RE      +       E + +    
Sbjct: 869  IIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE---LKKLKIEARSVERYKKLHIG 925

Query: 195  LEQKISQLRDESAALNMKRASLEERLKLLEADKDSWT--------------QMESVSKET 240
            LE KI QL+ +    N +  SL E++  LE    + T              +    +   
Sbjct: 926  LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNR 985

Query: 241  IAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESK-KLQHATSEQK 299
            +  L  +I +LR ++ + +  +  + +   + K     L S+L    +  K +     ++
Sbjct: 986  VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRR 1045

Query: 300  DFSTQIEAAGALIDKLITENIELVEKVNDLSVKL 333
                  E    +  KL+ E  +L   +ND  ++ 
Sbjct: 1046 IHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 50.3 bits (120), Expect = 8e-07
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 7/132 (5%)

Query: 173 GLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEAD----KD 228
           G+   ++  Q++ +  LQ    LE  + Q+ ++++ +     +++      E+      D
Sbjct: 24  GIADFLSTYQTKVDKDLQS---LEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMID 80

Query: 229 SWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES 288
           + T       E I      I      +  L+E  N+  Q+   LKE V+ L +Q      
Sbjct: 81  AATLKSRKMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCK 140

Query: 289 KKLQHATSEQKD 300
             +Q      KD
Sbjct: 141 DTVQIHDITGKD 152

>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C Length = 411

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 3/92 (3%)

Query: 73  LAEAERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATL 132
           L + E +    ++ +  ++ T     + + + I          +++  E   Y+  + T 
Sbjct: 47  LHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDA---ATLKSRKMLEEIMKYEASILTH 103

Query: 133 EETIQQLQRQNDLRMQKEATLEETIKQLRNQN 164
           + +I+ LQ   +   QK   L+E + QL  Q 
Sbjct: 104 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 135

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Length = 464

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 2/107 (1%)

Query: 77  ERQHLLQREAMAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETI 136
            +Q    +  +  L++ V    +   +  Q    ++  + + Q +       ++     +
Sbjct: 92  LKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEM 151

Query: 137 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQS 183
           +     N ++   +  +  +++ LR   D   ++   LE  IA    
Sbjct: 152 ELH--YNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTD 196

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Length = 464

 Score = 43.8 bits (103), Expect = 9e-05
 Identities = 13/110 (11%), Positives = 38/110 (34%), Gaps = 2/110 (1%)

Query: 95  KHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE 154
             L  + ++       L+  V +  +      + V  ++  + + Q+Q        +   
Sbjct: 89  TTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYN 148

Query: 155 ETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD 204
             ++   N    ++     +  ++  L++  +   +K   LE  I+   D
Sbjct: 149 TEMELHYNYIKDNLDNN--IPSSLRVLRAVIDSLHKKIQKLENAIATQTD 196

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score = 41.9 bits (97), Expect = 4e-04
 Identities = 28/272 (10%), Positives = 77/272 (28%), Gaps = 8/272 (2%)

Query: 70  SANLAEAERQHLLQREAMAILEETVKHLRNERES---HIQKEATLEGTVQQLQNECDLYK 126
            +  A  +R+  L   ++A + E          S       E     TV Q         
Sbjct: 371 QSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTKSRSV 430

Query: 127 EKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRN--QNDLHIQREGGLEMNIANLQSE 184
            +   ++   Q ++   +L  +    L+E+++ L      D  ++ +             
Sbjct: 431 IEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTPSNEL 490

Query: 185 KEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW-TQMESVSKETIAG 243
            +    +       + +       +     S  + + LL   +      + S +      
Sbjct: 491 YKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQ 550

Query: 244 LSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS--DESKKLQHATSEQKDF 301
            S  +  L+  +  L+E +         LK     + S+  +   +   +        + 
Sbjct: 551 GSEVVNVLKSLLSNLDEVKKEREGLENDLKSVNFDMTSKFLTALAQDGVINEEALSVTEL 610

Query: 302 STQIEAAGALIDKLITENIELVEKVNDLSVKL 333
                     + + + +   L++ +     + 
Sbjct: 611 DRVYGGLTTKVQESLKKQEGLLKNIQVSHQEF 642

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 13/70 (18%), Positives = 34/70 (48%), Gaps = 7/70 (10%)

Query: 133 EETIQQLQRQNDLRMQ-KEATLEETIKQLRNQ-----NDLHIQREGGLEMNIA-NLQSEK 185
            E+I++ + +   R+Q  +A  +   ++ R +      + + ++   +E N   N  ++K
Sbjct: 84  PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143

Query: 186 EFWLQKEAAL 195
            F+ Q +A +
Sbjct: 144 AFYQQPDADI 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	475
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.56
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	98.47
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.54
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.49
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.4
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	97.33
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.82
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	96.72
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.58
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.19
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.12
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	95.6
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	95.33
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	95.18
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	94.6
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	94.15
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	94.08
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	94.0
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.76
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	93.62
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	93.35
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	92.35
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	92.17
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	91.95
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	91.55
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	91.21
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	91.07
3bas_A	89	Myosin heavy chain, striated muscle/general contro	90.81
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	90.33
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	89.03
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	88.92
3bas_A	89	Myosin heavy chain, striated muscle/general contro	88.14
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.09
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	87.97
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	87.47
2no2_A	107	HIP-I, huntingtin-interacting protein 1; clathrin	87.13
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	86.98
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	86.4
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	86.39
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	86.13
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	85.88
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	85.13
1z2t_A	26	Anchor peptide Ser65-Leu87 of ALMGS; lipid binding	85.12
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	84.61
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	84.46
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	82.15
1m1j_B	464	Fibrinogen beta chain; coiled coils, disulfide rin	82.06
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	81.98
1m1j_C	409	Fibrinogen gamma chain; coiled coils, disulfide ri	81.93
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	81.88
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	81.86
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	81.56
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	81.56
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	81.17
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	80.27

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.06  E-value=4e-06  Score=76.60  Aligned_cols=129  Identities=12%  Similarity=0.133  Sum_probs=55.1

Q ss_pred             HHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHH
Q 011909           90 LEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQ  169 (475)
Q Consensus        90 ~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Q  169 (475)
                      +...+..|..+....-..-.-++..+..+..++..+...+..+...+..+..+...+-.....++..+..+.........
T Consensus        18 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (284)
T 1c1g_A           18 ALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE   97 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444433333333333344444444444444444444444444444444444444444444444444444444444


Q ss_pred             HhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 011909          170 REGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEE  218 (475)
Q Consensus       170 kea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEe  218 (475)
                      ....+...+..+...+.....++..+...+..+......+...+..+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (284)
T 1c1g_A           98 ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEI  146 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            4444444444444444444444444444433333333333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.56  E-value=1.5e-07  Score=108.48  Aligned_cols=13  Identities=15%  Similarity=0.253  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHh
Q 011909           84 REAMAILEETVKH   96 (475)
Q Consensus        84 ~~~~~~~eeti~~   96 (475)
                      +.|.-+++-.+|.
T Consensus       818 ~~a~~~iQ~~~r~  830 (1184)
T 1i84_S          818 LESIFCIQYNVRS  830 (1184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3454445554443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=98.47  E-value=3.4e-07  Score=105.44  Aligned_cols=111  Identities=19%  Similarity=0.170  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHH
Q 011909          111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ  190 (475)
Q Consensus       111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~q  190 (475)
                      ++..+..|+.++..+...+.........++.+...+......++..+.+++............+..++..++.++.....
T Consensus       883 le~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~  962 (1184)
T 1i84_S          883 LEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE  962 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444455555555555555555555444444444444444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909          191 KEAALEQKISQLRDESAALNMKRASLEERLK  221 (475)
Q Consensus       191 Ela~L~peiekL~~Ee~~LkqkLasLEeKl~  221 (475)
                      ++..+..++..+..+...+..++..++.++.
T Consensus       963 eleele~~l~~l~~e~~~le~~l~~l~~el~  993 (1184)
T 1i84_S          963 QLEEEEAARQKLQLEKVTADGKIKKMEDDIL  993 (1184)
T ss_dssp             -------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444433333

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.54  E-value=0.013  Score=56.79  Aligned_cols=40  Identities=13%  Similarity=0.231  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 011909          115 VQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLE  154 (475)
Q Consensus       115 IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE  154 (475)
                      ++.++.+|+.+.+.+..|..++..|+.+...+-.....+.
T Consensus        13 LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~   52 (256)
T 3na7_A           13 ISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE   52 (256)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555544444333333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.49  E-value=0.015  Score=54.92  Aligned_cols=162  Identities=13%  Similarity=0.168  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909          142 QNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK  221 (475)
Q Consensus       142 d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~  221 (475)
                      ......+....++..+.+|+   .++.+-++.|+.+|.++++.+.....+...+.-++..++.........         
T Consensus        18 ~~~~~~q~~~~le~El~EFq---esSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e---------   85 (189)
T 2v71_A           18 LSMKYKQSFQEARDELVEFQ---EGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ---------   85 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            33334444444444444554   345666666777777776666666655555555555555444333221         


Q ss_pred             HHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 011909          222 LLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKD  300 (475)
Q Consensus       222 ~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~  300 (475)
                              |. ..| .|+..|+.+...+..|+..|.+||-....+..........+..+...+...=...|+        
T Consensus        86 --------~~-~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~al--------  148 (189)
T 2v71_A           86 --------SY-KQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAF--------  148 (189)
T ss_dssp             --------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             --------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--------
Confidence                    11 224 666677777777777888888888877777777777777777766665542223333        


Q ss_pred             chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          301 FSTQIEAAGALIDKLITENIELVEKVNDLSVKLDRQ  336 (475)
Q Consensus       301 Ls~E~E~l~s~vekL~~enq~LeEe~neL~~~l~~~  336 (475)
                      |.++++.    =+.|..+.|+|.++++||...|.-.
T Consensus       149 LE~El~E----Ke~l~~~~QRLkdE~rDLk~El~v~  180 (189)
T 2v71_A          149 LESELDE----KESLLVSVQRLKDEARDLRQELAVR  180 (189)
T ss_dssp             HHHHHHH----HHHHHCCC-----------------
T ss_pred             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334432    3355777888999999998866433

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.40  E-value=0.013  Score=55.35  Aligned_cols=100  Identities=11%  Similarity=0.148  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          133 EETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMK  212 (475)
Q Consensus       133 ~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~Lkqk  212 (475)
                      +.++.+++....++..+.+.+...+..++.+......   .+..++..|+.++.........+...+..|.-.|+.|..+
T Consensus        48 E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~---e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~  124 (189)
T 2v71_A           48 EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA---QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA  124 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3355555555555555555555555555554433222   2344566666666666666666666666666666666665


Q ss_pred             HHhHHHHHHHH------HHhhhhhhhhhh
Q 011909          213 RASLEERLKLL------EADKDSWTQMES  235 (475)
Q Consensus       213 LasLEeKl~~L------kaERD~WLkkEI  235 (475)
                      ..-+...+..+      -=||..||..|+
T Consensus       125 ~R~~~~SleD~e~kln~aiEr~alLE~El  153 (189)
T 2v71_A          125 KRATIMSLEDFEQRLNQAIERNAFLESEL  153 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554444444      224555555554

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=97.33  E-value=0.034  Score=51.63  Aligned_cols=145  Identities=16%  Similarity=0.160  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHH
Q 011909          111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ  190 (475)
Q Consensus       111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~q  190 (475)
                      ..+.|..|+.+|..+..++..-.++-..|+.....+.+..+.+|..+++|+.......-.+..|+.++..|+...+.=..
T Consensus         4 ~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~   83 (168)
T 3o0z_A            4 ANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERR   83 (168)
T ss_dssp             ------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667778888888888888888888899999999999999999999999998877777777666666666665544222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHH---
Q 011909          191 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLL---  266 (475)
Q Consensus       191 Ela~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~---  266 (475)
                      --......              ...++.++..        |..|+ .++..++....++..|.+.+..||.+.+++.   
T Consensus        84 ~r~q~se~--------------~~elq~ri~~--------L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~  141 (168)
T 3o0z_A           84 DRGHDSEM--------------IGDLQARITS--------LQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDL  141 (168)
T ss_dssp             HHHHHHHH--------------HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--------------HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            22222222              2223222222        23444 4555666666777777777777777777666   


Q ss_pred             -HHHHHHHHHHH
Q 011909          267 -QENRQLKENVS  277 (475)
Q Consensus       267 -kEIqqLReqLd  277 (475)
                       =++..++..++
T Consensus       142 ~~eLKalQ~~~e  153 (168)
T 3o0z_A          142 NYKLKSLQQRLE  153 (168)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence             55555555444

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.82  E-value=0.028  Score=64.78  Aligned_cols=30  Identities=17%  Similarity=0.203  Sum_probs=15.4

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHH
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNL  265 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL  265 (475)
                      .|++.++.+..++..|+.++.+|+......
T Consensus      1020 ~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555555555433333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=96.72  E-value=0.054  Score=62.49  Aligned_cols=128  Identities=17%  Similarity=0.199  Sum_probs=47.3

Q ss_pred             HHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909          148 QKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQK---ISQLRDESAALNMKRASLEERLKLLE  224 (475)
Q Consensus       148 QkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~pe---iekL~~Ee~~LkqkLasLEeKl~~Lk  224 (475)
                      +....+|.+|.+|+............|.+++..++   ..+.++.+.|+.+   ++.+..+...++.++..+++++..|.
T Consensus       921 ~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~  997 (1080)
T 2dfs_A          921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR  997 (1080)
T ss_dssp             ------------------------------CHHHH---HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33556666666666666555555555555554444   2333444444332   23333333344444444444444433


Q ss_pred             HhhhhhhhhhhchHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011909          225 ADKDSWTQMESVSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDES  288 (475)
Q Consensus       225 aERD~WLkkEIsLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~  288 (475)
                      .+...       +.+....+...+..++   .+|++....|.++++.|+.+++++...+...+.
T Consensus       998 ~~~~~-------~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A          998 KELHQ-------TQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32222       2222222333333333   355577777788888888888877766666444

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.58  E-value=0.4  Score=61.00  Aligned_cols=101  Identities=15%  Similarity=0.186  Sum_probs=71.5

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHH
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKL  315 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL  315 (475)
                      .++..+...+.++...+.++...+.....+...++.|+.+.+.+..+-+.|+.+...|        ...++++..++..|
T Consensus      2011 Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~--------~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A         2011 PLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV--------KNKVDRSIALLDNL 2082 (3245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhh
Confidence            5666777777777777777777777777777777888777777777777766665544        45677888888888


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhcccc
Q 011909          316 ITENIELVEKVNDLSVKLDRQSVAAGLSS  344 (475)
Q Consensus       316 ~~enq~LeEe~neL~~~l~~~~~~~~~ss  344 (475)
                      -.|+.+=.+.+.+|..++...--+.=+++
T Consensus      2083 ~~Ek~RW~~~~~~l~~~~~~L~GD~LLaa 2111 (3245)
T 3vkg_A         2083 NSERGRWEQQSENFNTQMSTVVGDVVLAS 2111 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccccHHHHHHHHHHHHHhccHHHHHHH
Confidence            88888888888887766655443433333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.19  E-value=0.8  Score=58.34  Aligned_cols=89  Identities=12%  Similarity=0.183  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHH
Q 011909          190 QKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQE  268 (475)
Q Consensus       190 qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kE  268 (475)
                      .+++.++.++.....+-.....+++.+++++..|+++.+.-+ .|. .|+..+..-...+....+=+..|..++.-|.+.
T Consensus      2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~-~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A         2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI-RETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence            445555566666666666666667777777777777776633 344 666666666666666666677777777777777


Q ss_pred             HHHHHHHHHHH
Q 011909          269 NRQLKENVSSL  279 (475)
Q Consensus       269 IqqLReqLdel  279 (475)
                      +..++.++..+
T Consensus      2093 ~~~l~~~~~~L 2103 (3245)
T 3vkg_A         2093 SENFNTQMSTV 2103 (3245)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            77777666655

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.12  E-value=0.56  Score=43.52  Aligned_cols=66  Identities=12%  Similarity=0.088  Sum_probs=30.8

Q ss_pred             HhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 011909          151 ATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASL  216 (475)
Q Consensus       151 A~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasL  216 (475)
                      ..++-.+..|+...+.-...+....+.+.-|+..|.....++..+...+.++..++..|-.++..+
T Consensus        65 ~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l  130 (168)
T 3o0z_A           65 SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS  130 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333443333333333344444444555555555555555555555555555554444444

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=95.60  E-value=1.3  Score=40.46  Aligned_cols=122  Identities=22%  Similarity=0.191  Sum_probs=81.6

Q ss_pred             hhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHH
Q 011909           97 LRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEM  176 (475)
Q Consensus        97 l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee  176 (475)
                      +..+.+--..+=...+..|+.|+.++...-..++.       |+.--..+.++...++.+|+.|.........+-...+.
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKs-------LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AER   98 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLKS-------LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAER   98 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444445555566666655554444444       56666677788888889999998888888777777777


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011909          177 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEA  225 (475)
Q Consensus       177 ~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~Lka  225 (475)
                      .+..|+..|+...-++..-+.+|..+..+-...-..+.++.++.-.|-+
T Consensus        99 sv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~  147 (155)
T 2efr_A           99 SVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLEN  147 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence            7888888888888777777777777777766666666665555554433

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=95.33  E-value=1.2  Score=38.99  Aligned_cols=106  Identities=17%  Similarity=0.191  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHH
Q 011909          111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQ  190 (475)
Q Consensus       111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~q  190 (475)
                      .++.++.+..++..++..+......++.|+..+..+++.+..+...+..-+       ..-+..++....|.........
T Consensus        11 ~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~-------~~l~e~EE~~~~L~~~k~eLe~   83 (129)
T 2fxo_A           11 REKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQ-------DNLADAEERCDQLIKNKIQLEA   83 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHH
Confidence            345556666666666666666666666666666666666655554433222       2222333444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011909          191 KEAALEQKISQLRDESAALNMKRASLEERLKLL  223 (475)
Q Consensus       191 Ela~L~peiekL~~Ee~~LkqkLasLEeKl~~L  223 (475)
                      ++..+..+++...+.+..|...-..++..+..|
T Consensus        84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~L  116 (129)
T 2fxo_A           84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSEL  116 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444443333

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=95.18  E-value=0.1  Score=45.57  Aligned_cols=29  Identities=17%  Similarity=0.111  Sum_probs=12.8

Q ss_pred             hhhhchHHHHHHHhHHHHHHHHHHHHHHH
Q 011909          297 EQKDFSTQIEAAGALIDKLITENIELVEK  325 (475)
Q Consensus       297 En~~Ls~E~E~l~s~vekL~~enq~LeEe  325 (475)
                      .-.+|...-+++|..|.+|+.+|..|.++
T Consensus        78 qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk  106 (112)
T 1x79_B           78 QMAVLMQSREQVSEELVRLQKDNDSLQGK  106 (112)
T ss_dssp             HHHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence            66688888899999999999999888864

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=94.15  E-value=0.31  Score=40.28  Aligned_cols=50  Identities=24%  Similarity=0.325  Sum_probs=36.0

Q ss_pred             chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          236 VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       236 sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      -|+..|..++..+..|..+..++...+..|..+++.|+.....|+.++..
T Consensus        24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~   73 (81)
T 2jee_A           24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   73 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556666666677777777777777777777777787777777777665

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=94.08  E-value=1.1  Score=39.04  Aligned_cols=86  Identities=21%  Similarity=0.283  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          126 KEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDE  205 (475)
Q Consensus       126 k~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~E  205 (475)
                      +.++..+.-++..|+.+...+....+.+|..|.+++........   .+...|..|+.++.....+++....+|..|.+.
T Consensus        35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~---~~q~~i~~lE~eL~~~r~e~~~ql~EYq~Llnv  111 (129)
T 3tnu_B           35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALK---DARNKLAELEEALQKAKQDMARLLREYQELMNT  111 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555666666666778888888888887655443   366667777777777777777777778777777


Q ss_pred             HHHHHHHHH
Q 011909          206 SAALNMKRA  214 (475)
Q Consensus       206 e~~LkqkLa  214 (475)
                      .-.|...++
T Consensus       112 Kl~Ld~EIa  120 (129)
T 3tnu_B          112 KLALDVEIA  120 (129)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777655444

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=94.00  E-value=3.6  Score=37.62  Aligned_cols=25  Identities=12%  Similarity=0.161  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHhh
Q 011909          139 LQRQNDLRMQKEATLEETIKQLRNQ  163 (475)
Q Consensus       139 Le~d~~~~LQkkA~lE~kIKdLe~~  163 (475)
                      ++.++..+-......+.++.+|+..
T Consensus        26 ~E~dLEraEERae~aE~k~~eLEee   50 (155)
T 2efr_A           26 LKKLLERAEERAELSEGKSAELEEE   50 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444433

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.76  E-value=0.46  Score=39.27  Aligned_cols=63  Identities=19%  Similarity=0.309  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhh-------hHHHHHhHHHHHHHHHHHHHHHHHHH
Q 011909          137 QQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGG-------LEMNIANLQSEKEFWLQKEAALEQKI  199 (475)
Q Consensus       137 kQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~-------Lee~I~qLq~EI~~~~qEla~L~pei  199 (475)
                      .+|+.....++..++-++..|.+|+..+....+....       +..+..+|+.+...|...+..|..++
T Consensus         9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~   78 (81)
T 2jee_A            9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM   78 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5666666777777777777777777777665554444       66667777777777777776666554

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.62  E-value=1  Score=39.47  Aligned_cols=78  Identities=15%  Similarity=0.209  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          134 ETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKR  213 (475)
Q Consensus       134 etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkL  213 (475)
                      -++..|+.+........+.+|..|.+++........   .+...|..|+.++.....+++....+|..|.+..-.|...+
T Consensus        45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~---~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EI  121 (131)
T 3tnu_A           45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLA---QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEI  121 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555555678888888888887655443   35666777777777777777777777777777777665544


Q ss_pred             H
Q 011909          214 A  214 (475)
Q Consensus       214 a  214 (475)
                      +
T Consensus       122 a  122 (131)
T 3tnu_A          122 A  122 (131)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=93.35  E-value=2.1  Score=36.04  Aligned_cols=78  Identities=14%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHHH
Q 011909          177 NIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRMQ  254 (475)
Q Consensus       177 ~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqeE  254 (475)
                      .+..|+.++.....+.+.+..++..|..+...+...+..+++....|..+-..+.+.-......+.....+..+|..+
T Consensus         5 ~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q   82 (96)
T 3q8t_A            5 DSEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQ   82 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346677788888888888888899999999999999988888888885544444444334444444443333333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=92.35  E-value=1.4  Score=36.46  Aligned_cols=54  Identities=20%  Similarity=0.258  Sum_probs=28.2

Q ss_pred             HHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          156 TIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAAL  209 (475)
Q Consensus       156 kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~L  209 (475)
                      .+.+|+.+.+.-...+...+..+..|+...+...--...|+.+++.|.++-..|
T Consensus        29 ~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A           29 DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444455555555555555555555555555555555555554444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=92.17  E-value=3.9  Score=34.27  Aligned_cols=44  Identities=23%  Similarity=0.322  Sum_probs=17.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 011909          178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLK  221 (475)
Q Consensus       178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~  221 (475)
                      +..|+.+.+.+.-+-..+..++..+..........+.+|.-++.
T Consensus        11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq   54 (101)
T 3u59_A           11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK   54 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            33344444444444444444444433333333333333333333

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=91.95  E-value=2.1  Score=35.83  Aligned_cols=83  Identities=17%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHH
Q 011909          114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEA  193 (475)
Q Consensus       114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla  193 (475)
                      +|+.|=+.+.++..++..|+..=+.|+.+...+-+...              +.  -....+..|..|+..|+....+-+
T Consensus        10 ~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~~--------------~~--~~~~ye~~i~~Lr~~i~~~~~ek~   73 (93)
T 3s4r_A           10 ELQELNDRFANLIDKVRFLEQQNKILLAELEQLKGQGK--------------SR--LGDLYEEEMRELRRQVDQLTNDKA   73 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--------------CC--cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677777777776666665555554443332211              11  112245556666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 011909          194 ALEQKISQLRDESAALNMK  212 (475)
Q Consensus       194 ~L~peiekL~~Ee~~Lkqk  212 (475)
                      .+..++..+......++.+
T Consensus        74 ~l~~e~dnl~~~~~~~k~K   92 (93)
T 3s4r_A           74 RVEVERDNLAEDIMRLREK   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            6666666666555555544

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=91.55  E-value=2.6  Score=34.71  Aligned_cols=75  Identities=25%  Similarity=0.287  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHH
Q 011909          114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFW  188 (475)
Q Consensus       114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~  188 (475)
                      .|..+..+...+.-++.-+......++..+..-+...+.+|..|.-|+..++..--.+..|+.++..|+.||...
T Consensus         8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A            8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444445555555555556666666777899999999999999999999999999999999999874

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=91.21  E-value=5.1  Score=33.73  Aligned_cols=60  Identities=12%  Similarity=0.300  Sum_probs=42.5

Q ss_pred             HHHHHHHHHhhhcchhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909           87 MAILEETVKHLRNERESHIQKEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLR  146 (475)
Q Consensus        87 ~~~~eeti~~l~~e~~~~~~~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~  146 (475)
                      |+.+-.-|.-|+.+.|--+-+=..++..++.+.........++..|+-.+.+++.+++.+
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~   63 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQV   63 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            566666677777777777777777777777777777777777777777777777766654

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=90.81  E-value=3  Score=34.41  Aligned_cols=60  Identities=22%  Similarity=0.298  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHH
Q 011909          111 LEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQR  170 (475)
Q Consensus       111 l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qk  170 (475)
                      .++.++.+..++..++-.+......++.|+..+..+++.+..+...+.+.+.........
T Consensus        12 ~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~   71 (89)
T 3bas_A           12 QEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSK   71 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            345555566666666666666666666666666666666655555533333333333333

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=90.33  E-value=7.7  Score=33.69  Aligned_cols=91  Identities=19%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHH
Q 011909          110 TLEGTVQQLQNECDLYKEKVATLEE----TIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEK  185 (475)
Q Consensus       110 ~l~e~IkqLq~El~~lk~kl~~L~e----tikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI  185 (475)
                      -|...+..|..+++.++.+......    ++..|+.+...+......+...|++|+..++.....+-.            
T Consensus         7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~------------   74 (111)
T 2v66_B            7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRA------------   74 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH------------
Confidence            3445555566666666655555443    355566666666666666666666666666655544221            


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          186 EFWLQKEAALEQKISQLRDESAALNMKRA  214 (475)
Q Consensus       186 ~~~~qEla~L~peiekL~~Ee~~LkqkLa  214 (475)
                        -..-++.++.+|...-+.++-|...+.
T Consensus        75 --t~~SLeD~E~k~n~aiErnalLE~El~  101 (111)
T 2v66_B           75 --TIVSLEDFEQRLNQAIERNAFLESELD  101 (111)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence              223344455555555555555554444

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=89.03  E-value=9.2  Score=32.03  Aligned_cols=46  Identities=13%  Similarity=0.227  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011909          116 QQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLR  161 (475)
Q Consensus       116 kqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe  161 (475)
                      ..|+.++..++.+.+.|-..+..|+.++...-..+..++.....|.
T Consensus         7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~   52 (96)
T 3q8t_A            7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLD   52 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            4445555555555555555555555544444444444444444443

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=88.92  E-value=11  Score=32.74  Aligned_cols=66  Identities=15%  Similarity=0.228  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHH
Q 011909          114 TVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIA  179 (475)
Q Consensus       114 ~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~  179 (475)
                      .|..|+.++..+...-..+...++.|+-.++++=+..-..-..+.||+.......++.+-|+.+|.
T Consensus        36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~  101 (111)
T 2v66_B           36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELD  101 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455566666666666666666666666666666666655666666666666655555555554443

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=88.14  E-value=6.4  Score=32.40  Aligned_cols=69  Identities=16%  Similarity=0.159  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909          152 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL  220 (475)
Q Consensus       152 ~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl  220 (475)
                      .++..++.++.........+..++.+...|..++......++........|......|..++..+++++
T Consensus        18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl   86 (89)
T 3bas_A           18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV   86 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455555555555555555555555555555555555577777777777777777777777776654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.09  E-value=6.4  Score=35.09  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhcc
Q 011909           80 HLLQREAMAILEETVKHLRNE  100 (475)
Q Consensus        80 ~~~~~~~~~~~eeti~~l~~e  100 (475)
                      .+|++=| +.+.+.|+.+...
T Consensus        28 e~L~~vA-~~vd~km~ei~~~   47 (138)
T 3hnw_A           28 EYLQRVA-SYINNKITEFNKE   47 (138)
T ss_dssp             HHHHHHH-HHHHHHHHHHTTC
T ss_pred             HHHHHHH-HHHHHHHHHHHhc
Confidence            3555555 6899999999865

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=87.97  E-value=16  Score=33.41  Aligned_cols=29  Identities=24%  Similarity=0.341  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 011909          191 KEAALEQKISQLRDESAALNMKRASLEER  219 (475)
Q Consensus       191 Ela~L~peiekL~~Ee~~LkqkLasLEeK  219 (475)
                      +++.+.+++..|......-..+-...|..
T Consensus        52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~   80 (154)
T 2ocy_A           52 ELSDRDDEVKRLREDIAKENELRTKAEEE   80 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555544444443333333333

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=87.47  E-value=9.1  Score=41.16  Aligned_cols=55  Identities=16%  Similarity=0.162  Sum_probs=35.4

Q ss_pred             hhhhh--chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHhhhhh
Q 011909          231 TQMES--VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVS-SLRSQLSS  285 (475)
Q Consensus       231 LkkEI--sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLd-elqseiqs  285 (475)
                      ...|+  .|++.|..++..+..-...|..|+..+..+..+|+.|...|+ +++...-.
T Consensus       107 tynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgs  164 (562)
T 3ghg_A          107 TYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGS  164 (562)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            33555  567777777776666667777777777777777777776666 44443333

>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}

Probab=87.13  E-value=13  Score=31.72  Aligned_cols=78  Identities=14%  Similarity=0.128  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 011909          143 NDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKL  222 (475)
Q Consensus       143 ~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~  222 (475)
                      ..+..+.+..|+.++.+++.....   +-..-...|..|+.++.....++..+...++.....+..|..++..++.....
T Consensus        24 ~~e~e~~k~eL~~~~~~~~~~~~~---k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~  100 (107)
T 2no2_A           24 QVDLEREKKELEDSLERISDQGQR---KTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDS  100 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555556655522221   22223456888899999999999888888888888888887777666554443


Q ss_pred             H
Q 011909          223 L  223 (475)
Q Consensus       223 L  223 (475)
                      |
T Consensus       101 L  101 (107)
T 2no2_A          101 L  101 (107)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=86.98  E-value=18  Score=33.03  Aligned_cols=76  Identities=14%  Similarity=0.161  Sum_probs=31.9

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHH
Q 011909          107 KEATLEGTVQQLQNECDLYKEKVATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKE  186 (475)
Q Consensus       107 ~e~~l~e~IkqLq~El~~lk~kl~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~  186 (475)
                      +.+.|++.+..++.++......+..|+..+.+    +..+...++..+..++.|.....-...++...+....++..|++
T Consensus        14 ~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~----~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElE   89 (154)
T 2ocy_A           14 KQSHLEEQLNKSLKTIASQKAAIENYNQLKED----YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE   89 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH----HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555555555555444444433332222    22222333444444444444444444444434444444333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=86.40  E-value=8.7  Score=33.35  Aligned_cols=46  Identities=13%  Similarity=0.162  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHhHHHHHHHHHHH
Q 011909          268 ENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGALIDKLITENIE  321 (475)
Q Consensus       268 EIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s~vekL~~enq~  321 (475)
                      .|.-|+.+++=.+..... +.       ..-+++..+++.|...|..|+.++..
T Consensus        63 ~I~vLkaQv~IY~~DF~a-ER-------adREkl~~eKe~L~~ql~~Lq~q~~~  108 (110)
T 2v4h_A           63 TVPVLKAQADIYKADFQA-ER-------HAREKLVEKKEYLQEQLEQLQREFNK  108 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHcc-ch-------hhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence            455565565544444333 11       23445555666666666666655543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=86.39  E-value=8.1  Score=39.58  Aligned_cols=43  Identities=21%  Similarity=0.167  Sum_probs=19.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 011909          178 IANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERL  220 (475)
Q Consensus       178 I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl  220 (475)
                      .++++.+++...+....+..++++++++++.++..+..+...+
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (487)
T 3oja_A          423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL  465 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence            3334444444444444444455555554444444444443333

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=86.13  E-value=4.1  Score=35.49  Aligned_cols=58  Identities=17%  Similarity=0.310  Sum_probs=17.2

Q ss_pred             hhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          228 DSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       228 D~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      +.|.+.-+ .++..+..+...+...+.++.++......|.-+++.++.+...+...+..
T Consensus        10 E~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e   68 (129)
T 3tnu_B           10 ESWYQTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIAD   68 (129)
T ss_dssp             ------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            34555555 55555555555555555555555555555555555544444444444333

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=85.88  E-value=5.2  Score=35.65  Aligned_cols=8  Identities=13%  Similarity=0.418  Sum_probs=3.2

Q ss_pred             HHHHHHHH
Q 011909          154 EETIKQLR  161 (475)
Q Consensus       154 E~kIKdLe  161 (475)
                      ..+|+++.
T Consensus        38 d~km~ei~   45 (138)
T 3hnw_A           38 NNKITEFN   45 (138)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            33444444

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=85.13  E-value=4.7  Score=35.05  Aligned_cols=78  Identities=18%  Similarity=0.220  Sum_probs=39.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHhhhhhhhhhh-chHH---HHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011909          207 AALNMKRASLEERLKLLEADKDSWTQMES-VSKE---TIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQ  282 (475)
Q Consensus       207 ~~LkqkLasLEeKl~~LkaERD~WLkkEI-sLke---~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqse  282 (475)
                      +.|..+|...|+.+..-+.+.+. |+.+| ..+.   .|.-+.+++.--+.+-..=-..|..+..++..|.+++..++.+
T Consensus        27 ~~L~~~L~~AEeaL~~Kq~~ide-lk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q  105 (110)
T 2v4h_A           27 EDLRQQLQQAEEALVAKQELIDK-LKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQRE  105 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHH
Confidence            33444444444444333333333 33333 3333   4444444555444444455556666777777777777766666


Q ss_pred             hhh
Q 011909          283 LSS  285 (475)
Q Consensus       283 iqs  285 (475)
                      ...
T Consensus       106 ~~~  108 (110)
T 2v4h_A          106 FNK  108 (110)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            554

>1z2t_A Anchor peptide Ser65-Leu87 of ALMGS; lipid binding protein; NMR {Synthetic}

Probab=85.12  E-value=0.3  Score=31.61  Aligned_cols=13  Identities=62%  Similarity=1.001  Sum_probs=11.8

Q ss_pred             chhHHHHHHhhcc
Q 011909          452 PFRLVSFVAKYVS  464 (475)
Q Consensus       452 pfrlisfva~yvs  464 (475)
                      -|||+-||-|||-
T Consensus         4 gfrlvlfvkryvr   16 (26)
T 1z2t_A            4 GFRLVLFVKRYVR   16 (26)
T ss_dssp             CTTHHHHHHHHTH
T ss_pred             cEEEeeeHHHHHH
Confidence            4999999999994

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=84.61  E-value=13  Score=30.16  Aligned_cols=68  Identities=18%  Similarity=0.213  Sum_probs=45.9

Q ss_pred             HHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          144 DLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRA  214 (475)
Q Consensus       144 ~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLa  214 (475)
                      ..+....+.+|..|.+++.......   ..+...|..|+.++.....+++....+|..|.+..-.|...++
T Consensus         4 ~~l~~~~~sLE~~l~e~e~~~~~~~---~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa   71 (84)
T 1gk4_A            4 DALKGTNESLERQMREMEENFAVEA---ANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA   71 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3444566778888888877765443   3366667777777777777777777777777777776655443

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=84.46  E-value=4  Score=35.71  Aligned_cols=56  Identities=20%  Similarity=0.198  Sum_probs=12.5

Q ss_pred             hhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011909          228 DSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQL  283 (475)
Q Consensus       228 D~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqsei  283 (475)
                      +.|.+.-+ .++..+..+...+...+.++.++......|.-+++.++.+...+...+
T Consensus        12 E~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l   68 (131)
T 3tnu_A           12 EEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSL   68 (131)
T ss_dssp             -----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            34544444 455555555555555555555544444444444444444444443333

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=82.15  E-value=4.8  Score=33.07  Aligned_cols=53  Identities=9%  Similarity=0.150  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          152 TLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRD  204 (475)
Q Consensus       152 ~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~  204 (475)
                      .+|.+|..|+.......+++..+..+++++-.-.+-++.++..+.-.+.+|-.
T Consensus        24 ~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~~   76 (79)
T 3cvf_A           24 ELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLAE   76 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcc
Confidence            46778888888888888888888888999988888888888888777777643

>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*

Probab=82.06  E-value=32  Score=36.36  Aligned_cols=10  Identities=10%  Similarity=0.112  Sum_probs=7.6

Q ss_pred             ccCCCCCCCc
Q 011909           59 DADRHQSNGA   68 (475)
Q Consensus        59 ~~~~~~~~~~   68 (475)
                      ++--+||+|=
T Consensus        76 ~~G~~CPTtC   85 (464)
T 1m1j_B           76 ELGVLCPTGC   85 (464)
T ss_dssp             TTCEEEECTT
T ss_pred             CccCcCCCcc
Confidence            5777899983

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=81.98  E-value=11  Score=29.56  Aligned_cols=48  Identities=17%  Similarity=0.199  Sum_probs=36.1

Q ss_pred             hhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 011909          226 DKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLK  273 (475)
Q Consensus       226 ERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLR  273 (475)
                      |=+.|.+.-+ .++.....+...+...+.++.+|......|.-+++.++
T Consensus        28 EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk   76 (77)
T 3trt_A           28 EAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK   76 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3345777777 78888888888888888888887777777777776664

>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C

Probab=81.93  E-value=10  Score=39.53  Aligned_cols=99  Identities=9%  Similarity=0.051  Sum_probs=55.3

Q ss_pred             hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhchHHHHhhhHHHHHHHHH
Q 011909          174 LEMNIANLQSEKEFWLQKEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSWTQMESVSKETIAGLSVDITQLRM  253 (475)
Q Consensus       174 Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~WLkkEIsLke~ISsl~~EiksLqe  253 (475)
                      ++..|..++.-+..-+++|..+..+++.+..+...|.+.+...             |-..+-.....+.......+.+.+
T Consensus        25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~-------------~~~~Q~~~~d~~e~~tq~skkml~   91 (409)
T 1m1j_C           25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTI-------------YPSEKQTLPQSIEQLTQKSKKIIE   91 (409)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------SCSSTTCCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cccccCCCCCchhhHHHHHHHHHH
Confidence            4455666666666666666666666666666555554333322             444443222222222445556777


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          254 QVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       254 EVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      ++..++.........|..|+..+...+..++.
T Consensus        92 ~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~  123 (409)
T 1m1j_C           92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQ  123 (409)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHhhHHHHHH
Confidence            77777777777777777776666655443333

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=81.88  E-value=11  Score=34.35  Aligned_cols=34  Identities=12%  Similarity=0.240  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhh
Q 011909          196 EQKISQLRDESAALNMKRASLEERLKLLEADKDS  229 (475)
Q Consensus       196 ~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~  229 (475)
                      ..-++.++++..+|.-++..++.+++.|+.|.+.
T Consensus        95 ~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~  128 (152)
T 3a7p_A           95 NKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ  128 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555555555543

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=81.86  E-value=16  Score=30.43  Aligned_cols=35  Identities=26%  Similarity=0.322  Sum_probs=15.4

Q ss_pred             HHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHH
Q 011909          153 LEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEF  187 (475)
Q Consensus       153 lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~  187 (475)
                      .|..|.+|+..++......+.++-+|.+|+.++..
T Consensus        54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~   88 (93)
T 3s4r_A           54 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMR   88 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=81.56  E-value=48  Score=33.82  Aligned_cols=49  Identities=8%  Similarity=0.070  Sum_probs=28.7

Q ss_pred             HHHHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHh
Q 011909          209 LNMKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVEL  258 (475)
Q Consensus       209 LkqkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeL  258 (475)
                      .++-+.....+++.|+.+++. +++++ .+...|....+.+..+..+...|
T Consensus       433 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  482 (487)
T 3oja_A          433 AIRDWDMYQHKETQLAEENAR-LKKLNGEADLALASANATLQELVVREQNL  482 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhHHHHHHHHhhh-hhhhhhhhhhhhHhcccHHHHHHHHHHHH
Confidence            334444445555555554444 66677 77777777776666666555544

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=81.56  E-value=22  Score=29.54  Aligned_cols=87  Identities=16%  Similarity=0.278  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh--hhhhh---chHHHHhhhHHHHHHHHHHHHHhHHHHHHH
Q 011909          191 KEAALEQKISQLRDESAALNMKRASLEERLKLLEADKDSW--TQMES---VSKETIAGLSVDITQLRMQVVELEESRNNL  265 (475)
Q Consensus       191 Ela~L~peiekL~~Ee~~LkqkLasLEeKl~~LkaERD~W--LkkEI---sLke~ISsl~~EiksLqeEVkeLEesr~eL  265 (475)
                      ++..+..++..|......+..++..+...+..|....+.=  -.+.+   .....+......+..+..++..|......+
T Consensus        11 ~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~~~~~l~~l~~~i~~l~~~i~~l   90 (112)
T 1l8d_A           11 KKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSKYHLDLNNSKNTLAKLIDRKSEL   90 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555556666666666665552210000  00011   112345555556666666666666666666


Q ss_pred             HHHHHHHHHHHH
Q 011909          266 LQENRQLKENVS  277 (475)
Q Consensus       266 ~kEIqqLReqLd  277 (475)
                      ..++..|+..+.
T Consensus        91 ~~~~~~l~~~~~  102 (112)
T 1l8d_A           91 ERELRRIDMEIK  102 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666655554

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=81.17  E-value=27  Score=30.37  Aligned_cols=76  Identities=18%  Similarity=0.101  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011909          129 VATLEETIQQLQRQNDLRMQKEATLEETIKQLRNQNDLHIQREGGLEMNIANLQSEKEFWLQKEAALEQKISQLRDESAA  208 (475)
Q Consensus       129 l~~L~etikQLe~d~~~~LQkkA~lE~kIKdLe~~~~s~~Qkea~Lee~I~qLq~EI~~~~qEla~L~peiekL~~Ee~~  208 (475)
                      .+.|+....+|+.+........+.+|+.          ..++......++..|...+....+-|..|...+.+.++....
T Consensus         8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~----------w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~   77 (112)
T 1x79_B            8 VKKLQLMLRQANDQLEKTMKDKQELEDF----------IKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQE   77 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455556666666666666666666655          223333344455566666666666666666666666655554


Q ss_pred             HHHHHH
Q 011909          209 LNMKRA  214 (475)
Q Consensus       209 LkqkLa  214 (475)
                      ...+|.
T Consensus        78 qL~~Lt   83 (112)
T 1x79_B           78 QMAVLM   83 (112)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.27  E-value=13  Score=31.65  Aligned_cols=79  Identities=16%  Similarity=0.234  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhchHHHHHHHh--------HHHHHHHH
Q 011909          247 DITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSSDESKKLQHATSEQKDFSTQIEAAGA--------LIDKLITE  318 (475)
Q Consensus       247 EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqsLE~Eeal~e~eEn~~Ls~E~E~l~s--------~vekL~~e  318 (475)
                      ++..++.++..|+.....+..++..|+..+..-+..+...+.        ++..+..++|-|++        +|-.-..+
T Consensus         6 ~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~--------~~~~ie~ElEeLTasLFeEAN~MVa~ar~e   77 (97)
T 2eqb_B            6 NYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEE--------EADKLNKEVEDLTASLFDEANNMVADARKE   77 (97)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666777777776666655544444332        33344444444443        22222333


Q ss_pred             HHHHHHHHHHHHHhh
Q 011909          319 NIELVEKVNDLSVKL  333 (475)
Q Consensus       319 nq~LeEe~neL~~~l  333 (475)
                      ...++.++..|..+|
T Consensus        78 ~~~~e~kn~~L~~qL   92 (97)
T 2eqb_B           78 KYAIEILNKRLTEQL   92 (97)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            344455556665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	475
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	83.17
d2ap3a1	185	Hypothetical protein MW0975 (SA0943) {Staphylococc	81.72

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=83.17  E-value=4.3  Score=32.05  Aligned_cols=68  Identities=15%  Similarity=0.164  Sum_probs=34.9

Q ss_pred             HHHHhHHHHHHHHHHhhhhhhhhhh-chHHHHhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011909          211 MKRASLEERLKLLEADKDSWTQMES-VSKETIAGLSVDITQLRMQVVELEESRNNLLQENRQLKENVSSLRSQLSS  285 (475)
Q Consensus       211 qkLasLEeKl~~LkaERD~WLkkEI-sLke~ISsl~~EiksLqeEVkeLEesr~eL~kEIqqLReqLdelqseiqs  285 (475)
                      ++...+..++..|+++|+. +.++| ..      .......+..++..+......+..+...+...+..+-..+++
T Consensus        35 ~~rr~l~~~~e~l~~~rN~-~sk~i~k~------~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~ll~iPN  103 (110)
T d1seta1          35 REVQELKKRLQEVQTERNQ-VAKRVPKA------PPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPL  103 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHGGGC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHh------hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3444455555566666666 55556 21      122333445555555555555555555555555555555544

>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943) {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: MW0975(SA0943)-like
family: MW0975(SA0943)-like
domain: Hypothetical protein MW0975 (SA0943)
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.72  E-value=9.6  Score=29.39  Aligned_cols=32  Identities=6%  Similarity=0.130  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 011909          248 ITQLRMQVVELEESRNNLLQENRQLKENVSSL  279 (475)
Q Consensus       248 iksLqeEVkeLEesr~eL~kEIqqLReqLdel  279 (475)
                      +..+...+..++.....+...+..+...+..+
T Consensus       146 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~  177 (185)
T d2ap3a1         146 QQGVNEKSKAIEQNYKKLKEVSDKYTKVLNKV  177 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444443333333