Citrus Sinensis ID: 011913

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
MKQKTASSGSRGKDQTNQAGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLHV
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccEEEEEEcccHHcccHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHcccccccccEEEEEEccEEEccccHHHHcccccccEEEEEcccccHHHHHHHHHHccccccHHHHccccccccccccccccEEHHHHHHHcHHHHHHHHHHHcccccccccccHHHHHHHHccccEEccccccccccccccccccccccccEEEEccccccccccccccccHHHHHHHHccccHHHHHHcccc
cccccHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcHHHHHccHHHccccccHcccccccEEEEEEcccHHHHEEEEHHHHHcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEcccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHcHcccEEEEEcccEEEEEccHHHHcEcccccEEccccccccccccccHHccccccccHHHHHccccccHHHHcccEEEEHHHHHHccHHHHHHHHHHHcccccEHHccccccHHEEEcccccccccccEEccccccccccHHHHcccEEEEEccccccHHHHccHHHHHHHHHHcccccHHHHHccccc
mkqktassgsrgkdqtnqagarrspnvqaSLLRVSDEKIKEMKDQVIRAQAYlnfappgsnshLVKELKLRIKEVERAvgaatkdsdlSRRAFRRMNQMEATLDkashvypdcsaMATKLRAMTYNAEERVRLQKNQATYLVQLAsrttpkglhclsMQLTAEYFalqpeerhlpnqqdlhnpdlhhyavfSDNVLACAVVVNStvsfakepeKIVFHVVTdslnlpaiSMWFllnppgkatiqIQSIDNFNWLSTKYNAtlkkenshdprytsALNHLRFYLPDVFPALNkvllfdhdvvvqsdlgrlwnidmkgKVIGAVDTCKESEASFRRMdlfinfsdpliakkfdvKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLgykrplwkagslplgwvTFYKHTMALDKRWHVLglgydsgvarrDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKfinydhpflqrcnlhv
mkqktassgsrgkdqtnqagarrspnvqasllrVSDEKIKEMKDQVIRAQAYlnfappgsnsHLVKELKLRIKEVEravgaatkdsdlsrraFRRMNQMEatldkashvypDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLgrlwnidmkgkVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQlgykrplwkagSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLHV
MKQKTASSGSRGKDQTNQAGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLHV
*********************************************VIRAQAYLNFA******HLVKELKLRIK**********************************HVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQ***********LHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKK****DPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCN***
*************************************KIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIK**********************MNQMEATLDKASHVYPDCSAMATKLRAMTYNAE*******NQATYLVQLASRTTPKGLHCLSMQLTAEY********************LHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH*
************************PNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLHV
********************************RVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLHV
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MKQKTASSGSRGKDQTNQAGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLxxxxxxxxxxxxxxxxxxxxxSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLHV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query475 2.2.26 [Sep-21-2011]
Q9M9Y5589 Probable galacturonosyltr yes no 0.930 0.750 0.671 0.0
Q8RXE1610 Probable galacturonosyltr no no 0.955 0.744 0.621 1e-173
Q93ZX7616 Probable galacturonosyltr no no 0.917 0.707 0.510 1e-147
Q9LE59673 Polygalacturonate 4-alpha no no 0.92 0.649 0.502 1e-141
Q0WQD2680 Probable galacturonosyltr no no 0.92 0.642 0.475 1e-127
Q9ZPZ1528 Putative galacturonosyltr no no 0.858 0.772 0.416 1e-102
Q949Q1537 Probable galacturonosyltr no no 0.901 0.797 0.404 1e-96
Q9LSG3559 Galacturonosyltransferase no no 0.962 0.817 0.391 9e-93
Q9SKT6536 Probable galacturonosyltr no no 0.907 0.804 0.396 8e-91
Q9FWA4561 Probable galacturonosyltr no no 0.850 0.720 0.396 2e-83
>sp|Q9M9Y5|GAUT6_ARATH Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1 Back     alignment and function desciption
 Score =  642 bits (1656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 297/442 (67%), Positives = 359/442 (81%)

Query: 33  RVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRA 92
           R +D K KE++D++I+A+AYLNFAPPGSNS +VKEL+ R+KE+ER+VG ATKD DLS+ A
Sbjct: 147 RATDVKTKEIRDKIIQAKAYLNFAPPGSNSQVVKELRGRLKELERSVGDATKDKDLSKGA 206

Query: 93  FRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKG 152
            RR+  ME  L KAS V+ +C A+ATKLRAM YN EE+V+ QKNQA YL+QLA+RTTPKG
Sbjct: 207 LRRVKPMENVLYKASRVFNNCPAIATKLRAMNYNTEEQVQAQKNQAAYLMQLAARTTPKG 266

Query: 153 LHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEP 212
           LHCLSM+LT+EYF+L PE+R +PNQQ+  + + +HY VFSDNVLA +VVVNST+S +KEP
Sbjct: 267 LHCLSMRLTSEYFSLDPEKRQMPNQQNYFDANFNHYVVFSDNVLASSVVVNSTISSSKEP 326

Query: 213 EKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENSHDPRY 272
           E+IVFHVVTDSLN PAISMWFLLN   KATIQI +ID+ + L   Y+  L K+NS+DPR+
Sbjct: 327 ERIVFHVVTDSLNYPAISMWFLLNIQSKATIQILNIDDMDVLPRDYDQLLMKQNSNDPRF 386

Query: 273 TSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASF 332
            S LNH RFYLPD+FP LNK++L DHDVVVQ DL RLW+IDMKGKV+GAV+TC E E+SF
Sbjct: 387 ISTLNHARFYLPDIFPGLNKMVLLDHDVVVQRDLSRLWSIDMKGKVVGAVETCLEGESSF 446

Query: 333 RRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWK 392
           R M  FINFSD  +A KF  +ACTWAFGMNL DL+EWR RKLT+ Y KY  LG KRPLWK
Sbjct: 447 RSMSTFINFSDTWVAGKFSPRACTWAFGMNLIDLEEWRIRKLTSTYIKYFNLGTKRPLWK 506

Query: 393 AGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAK 452
           AGSLP+GW+TFY+ T+ALDKRWHV+GLG +SGV   DIEQAAVIHYDGVMKPWL+IG   
Sbjct: 507 AGSLPIGWLTFYRQTLALDKRWHVMGLGRESGVKAVDIEQAAVIHYDGVMKPWLDIGKEN 566

Query: 453 YKGYWTKFINYDHPFLQRCNLH 474
           YK YW   + Y H +LQ+CNL 
Sbjct: 567 YKRYWNIHVPYHHTYLQQCNLQ 588
Probably involved in pectin biosynthesis in cell walls.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|Q8RXE1|GAUT5_ARATH Probable galacturonosyltransferase 5 OS=Arabidopsis thaliana GN=GAUT5 PE=2 SV=1 Back     alignment and function description
>sp|Q93ZX7|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LE59|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1 Back     alignment and function description
>sp|Q0WQD2|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZPZ1|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1 Back     alignment and function description
>sp|Q949Q1|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSG3|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1 Back     alignment and function description
>sp|Q9SKT6|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2 Back     alignment and function description
>sp|Q9FWA4|GAUT9_ARATH Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
224085587 605 glycosyltransferase, CAZy family GT8 [Po 0.997 0.783 0.731 0.0
225437237 588 PREDICTED: probable galacturonosyltransf 0.993 0.802 0.718 0.0
255559941 633 Glycosyltransferase QUASIMODO1, putative 0.968 0.726 0.717 0.0
356570614 625 PREDICTED: probable galacturonosyltransf 0.922 0.700 0.702 0.0
356504981 625 PREDICTED: probable galacturonosyltransf 0.924 0.702 0.705 0.0
156066430421 homogalacturonan alpha-1,4-galacturonosy 0.884 0.997 0.719 0.0
449458506 603 PREDICTED: probable galacturonosyltransf 0.968 0.762 0.645 0.0
297843472 595 hypothetical protein ARALYDRAFT_470701 [ 0.945 0.754 0.665 0.0
18390688 589 alpha-1,4-galacturonosyltransferase [Ara 0.930 0.750 0.671 0.0
334182350 602 alpha-1,4-galacturonosyltransferase [Ara 0.930 0.734 0.671 0.0
>gi|224085587|ref|XP_002307628.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] gi|222857077|gb|EEE94624.1| glycosyltransferase, CAZy family GT8 [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  748 bits (1930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/476 (73%), Positives = 402/476 (84%), Gaps = 2/476 (0%)

Query: 1   MKQKTASSGSRGK--DQTNQAGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPP 58
           + Q+T +S S  K   Q+NQA  R   N+++ +   +DEK+K+MKD +IRA+AYL+  PP
Sbjct: 129 IPQETVTSRSEAKLQGQSNQATVRHDQNMRSPVRIFTDEKVKQMKDDLIRAKAYLSMTPP 188

Query: 59  GSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMAT 118
           GSNSHLVKEL+LRIKE ERAV AA KDSDLSR A ++   +E TL KAS V+PDCSAMA 
Sbjct: 189 GSNSHLVKELRLRIKESERAVSAANKDSDLSRSALQKKRSLEVTLSKASRVFPDCSAMAL 248

Query: 119 KLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQ 178
           KLRAMTYNAEE+VR QKNQATYLVQL+ RTTPKGLHCLSM+LTAEYFAL PEER LPNQQ
Sbjct: 249 KLRAMTYNAEEQVRAQKNQATYLVQLSGRTTPKGLHCLSMRLTAEYFALSPEERQLPNQQ 308

Query: 179 DLHNPDLHHYAVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPP 238
            +H+ DL+HYAVFSDNVLACAVVVNSTVS A EPEKIVFH+VTDSLNLP ISMWFLLNPP
Sbjct: 309 RVHDADLYHYAVFSDNVLACAVVVNSTVSSAMEPEKIVFHIVTDSLNLPTISMWFLLNPP 368

Query: 239 GKATIQIQSIDNFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDH 298
           GKATIQIQS+ +F  LS  YN+TLK+ NS D RYTSALNHLRFYLPDVFP LNK++LFDH
Sbjct: 369 GKATIQIQSLVDFKGLSANYNSTLKQLNSRDSRYTSALNHLRFYLPDVFPQLNKIVLFDH 428

Query: 299 DVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWA 358
           DVVVQ DL  LW+++MKGKVIGAVDTC+E E SFRRMD FINFSDP + K+FD KACTWA
Sbjct: 429 DVVVQKDLAGLWSLNMKGKVIGAVDTCREGEPSFRRMDKFINFSDPFVIKRFDAKACTWA 488

Query: 359 FGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLG 418
           FGMNLFDLQEWR+ KLTA+Y+KYLQLG+ R LWKAGSLPLGW TFY  T+ LD+RWH LG
Sbjct: 489 FGMNLFDLQEWRRHKLTALYNKYLQLGHTRQLWKAGSLPLGWATFYNRTVILDRRWHKLG 548

Query: 419 LGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH 474
           LG+++GV    +EQAAV+HYDGVMKPWL+IGI KYK YW+K INYDHP+LQ+CN+H
Sbjct: 549 LGHEAGVGHDGVEQAAVLHYDGVMKPWLDIGIGKYKSYWSKHINYDHPYLQQCNIH 604

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437237|ref|XP_002282102.1| PREDICTED: probable galacturonosyltransferase 6 [Vitis vinifera] gi|297735505|emb|CBI17945.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255559941|ref|XP_002520989.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] gi|223539826|gb|EEF41406.1| Glycosyltransferase QUASIMODO1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356570614|ref|XP_003553480.1| PREDICTED: probable galacturonosyltransferase 6-like [Glycine max] Back     alignment and taxonomy information
>gi|356504981|ref|XP_003521271.1| PREDICTED: probable galacturonosyltransferase 6-like [Glycine max] Back     alignment and taxonomy information
>gi|156066430|gb|ABU43074.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Gossypium barbadense] Back     alignment and taxonomy information
>gi|449458506|ref|XP_004146988.1| PREDICTED: probable galacturonosyltransferase 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297843472|ref|XP_002889617.1| hypothetical protein ARALYDRAFT_470701 [Arabidopsis lyrata subsp. lyrata] gi|297335459|gb|EFH65876.1| hypothetical protein ARALYDRAFT_470701 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18390688|ref|NP_563771.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|75191689|sp|Q9M9Y5.1|GAUT6_ARATH RecName: Full=Probable galacturonosyltransferase 6 gi|7523701|gb|AAF63140.1|AC011001_10 Unknown protein [Arabidopsis thaliana] gi|15028087|gb|AAK76574.1| unknown protein [Arabidopsis thaliana] gi|20259311|gb|AAM14391.1| unknown protein [Arabidopsis thaliana] gi|332189914|gb|AEE28035.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334182350|ref|NP_001184925.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|332189915|gb|AEE28036.1| alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
TAIR|locus:504955915610 LGT5 "los glycosyltransferase 0.970 0.755 0.614 2.6e-157
TAIR|locus:2160957616 GAUT4 "galacturonosyltransfera 0.448 0.345 0.547 5.8e-137
TAIR|locus:2098836673 GAUT1 "galacturonosyltransfera 0.448 0.316 0.552 1.8e-131
TAIR|locus:2121753680 GAUT3 "galacturonosyltransfera 0.427 0.298 0.577 1.8e-118
TAIR|locus:2027453537 GAUT11 "galacturonosyltransfer 0.437 0.387 0.526 1e-92
TAIR|locus:2074572561 GAUT9 "galacturonosyltransfera 0.475 0.402 0.502 2.7e-88
TAIR|locus:2039934528 GAUT2 "galacturonosyltransfera 0.888 0.799 0.385 3.1e-83
TAIR|locus:2180947532 GAUT14 "galacturonosyltransfer 0.467 0.417 0.460 2.5e-81
TAIR|locus:2102082533 GAUT13 "galacturonosyltransfer 0.442 0.393 0.467 2.5e-81
TAIR|locus:2064163619 GAUT7 "AT2G38650" [Arabidopsis 0.903 0.693 0.357 5.1e-74
TAIR|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1533 (544.7 bits), Expect = 2.6e-157, P = 2.6e-157
 Identities = 284/462 (61%), Positives = 355/462 (76%)

Query:    13 KDQTNQAGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRI 72
             K +     ++   N +  L R +DE++KE++D++I+A+AYLN A PG+NS +VKEL++R 
Sbjct:   149 KTEFRPPSSKSEKNTRVQLERATDERVKEIRDKIIQAKAYLNLALPGNNSQIVKELRVRT 208

Query:    73 KEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVR 132
             KE+ERA G  TKD  L + +  R+  ME  L K S  + +C A+ATKL+AMTY  EE+ R
Sbjct:   209 KELERATGDTTKDKYLPKSSPNRLKAMEVALYKVSRAFHNCPAIATKLQAMTYKTEEQAR 268

Query:   133 LQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFS 192
              QK QA YL+QLA+RTTPKGLHCLSM+LT EYF L  E+R L  QQ  ++PDL+HY VFS
Sbjct:   269 AQKKQAAYLMQLAARTTPKGLHCLSMRLTTEYFTLDHEKRQLL-QQSYNDPDLYHYVVFS 327

Query:   193 DNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFN 252
             DNVLA +VVVNST+S +KEP+KIVFHVVTDSLN PAISMWFLLNP G+A+IQI +ID  N
Sbjct:   328 DNVLASSVVVNSTISSSKEPDKIVFHVVTDSLNYPAISMWFLLNPSGRASIQILNIDEMN 387

Query:   253 WLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNI 312
              L   +   L K+NS DPR  SALNH RFYLPD+FP LNK++LFDHDVVVQ DL RLW++
Sbjct:   388 VLPLYHAELLMKQNSSDPRIISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLTRLWSL 447

Query:   313 DMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKR 372
             DM GKV+GAV+TC E + S+R MD FINFSD  +++KFD KACTWAFGMNLFDL+EWR++
Sbjct:   448 DMTGKVVGAVETCLEGDPSYRSMDSFINFSDAWVSQKFDPKACTWAFGMNLFDLEEWRRQ 507

Query:   373 KLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQ 432
             +LT+VY KY  LG K  LWKAG LP+GW+TF+  T  L+KRW+V GLG++SG+   DIEQ
Sbjct:   508 ELTSVYLKYFDLGVKGHLWKAGGLPVGWLTFFGQTFPLEKRWNVGGLGHESGLRASDIEQ 567

Query:   433 AAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH 474
             AAVIHYDG+MKPWL+IGI KYK YW   + Y HP LQRCN+H
Sbjct:   568 AAVIHYDGIMKPWLDIGIDKYKRYWNIHVPYHHPHLQRCNIH 609
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=ISS
TAIR|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180947 GAUT14 "galacturonosyltransferase 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2064163 GAUT7 "AT2G38650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M9Y5GAUT6_ARATH2, ., 4, ., 1, ., -0.67190.93050.7504yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_V0534
glycosyltransferase, CAZy family GT8 (EC-2.4.1.43) (570 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.2235.1
hypothetical protein (287 aa)
     •  0.899
gw1.XIII.724.1
pectinesterase family protein (EC-3.1.1.11) (512 aa)
     •  0.899
gw1.X.3259.1
pectinesterase family protein (EC-3.1.1.11) (555 aa)
     •  0.899
gw1.IV.576.1
pectinesterase family protein (EC-3.1.1.11) (315 aa)
     •  0.899
grail3.0035002801
hypothetical protein (431 aa)
     •  0.899
grail3.0033029301
hypothetical protein (435 aa)
     •  0.899
fgenesh4_pm.C_LG_II000883
hypothetical protein (450 aa)
     •  0.899
fgenesh4_pg.C_LG_XIII000035
hypothetical protein (339 aa)
     •  0.899
eugene3.00880019
hypothetical protein (457 aa)
     •  0.899
eugene3.00280097
RecName- Full=Pectinesterase; EC=3.1.1.11; (520 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
PLN02718603 PLN02718, PLN02718, Probable galacturonosyltransfe 0.0
PLN02829639 PLN02829, PLN02829, Probable galacturonosyltransfe 0.0
PLN02910657 PLN02910, PLN02910, polygalacturonate 4-alpha-gala 1e-174
PLN02742534 PLN02742, PLN02742, Probable galacturonosyltransfe 1e-150
PLN02523559 PLN02523, PLN02523, galacturonosyltransferase 1e-127
PLN02769629 PLN02769, PLN02769, Probable galacturonosyltransfe 1e-122
PLN02870533 PLN02870, PLN02870, Probable galacturonosyltransfe 1e-105
PLN02867535 PLN02867, PLN02867, Probable galacturonosyltransfe 7e-97
PLN02659534 PLN02659, PLN02659, Probable galacturonosyltransfe 2e-96
cd06429257 cd06429, GT8_like_1, GT8_like_1 represents a subfa 6e-94
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 4e-56
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 8e-17
COG1442325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 1e-10
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 9e-10
cd06431280 cd06431, GT8_LARGE_C, LARGE catalytic domain has c 0.001
cd06432248 cd06432, GT8_HUGT1_C_like, The C-terminal domain o 0.004
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase Back     alignment and domain information 
 Score =  874 bits (2261), Expect = 0.0
 Identities = 337/462 (72%), Positives = 391/462 (84%)

Query: 13  KDQTNQAGARRSPNVQASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRI 72
           K Q N    +   N +    R +DEK+KE++D++I+A+AYLN APPGSNS LVKEL+LR 
Sbjct: 141 KTQFNPPTVKHEKNTRVQPRRATDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELRLRT 200

Query: 73  KEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASHVYPDCSAMATKLRAMTYNAEERVR 132
           KE+ERAVG ATKD DLS+ A +RM  ME TL KAS V+P+C A+ATKLRAMTYN EE+VR
Sbjct: 201 KELERAVGDATKDKDLSKSALQRMKSMEVTLYKASRVFPNCPAIATKLRAMTYNTEEQVR 260

Query: 133 LQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHYAVFS 192
            QKNQA YL+QLA+RTTPKGLHCLSM+LTAEYFAL PE+R LPNQQ  ++PDL+HY VFS
Sbjct: 261 AQKNQAAYLMQLAARTTPKGLHCLSMRLTAEYFALDPEKRQLPNQQRYNDPDLYHYVVFS 320

Query: 193 DNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFN 252
           DNVLAC+VVVNST+S +KEPEKIVFHVVTDSLN PAISMWFLLNPPGKATIQI +ID+ N
Sbjct: 321 DNVLACSVVVNSTISSSKEPEKIVFHVVTDSLNYPAISMWFLLNPPGKATIQILNIDDMN 380

Query: 253 WLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNI 312
            L   YN+ L K+NSHDPRY SALNH RFYLPD+FP LNK++LFDHDVVVQ DL RLW++
Sbjct: 381 VLPADYNSLLMKQNSHDPRYISALNHARFYLPDIFPGLNKIVLFDHDVVVQRDLSRLWSL 440

Query: 313 DMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKR 372
           DMKGKV+GAV+TC E E SFR MD FINFSDP +AKKFD KACTWAFGMNLFDL+EWR++
Sbjct: 441 DMKGKVVGAVETCLEGEPSFRSMDTFINFSDPWVAKKFDPKACTWAFGMNLFDLEEWRRQ 500

Query: 373 KLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVARRDIEQ 432
           KLT+VYHKYLQLG KRPLWKAGSLP+GW+TFY  T+ALDKRWHVLGLG++SGV   DIEQ
Sbjct: 501 KLTSVYHKYLQLGVKRPLWKAGSLPIGWLTFYNQTVALDKRWHVLGLGHESGVGASDIEQ 560

Query: 433 AAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH 474
           AAVIHYDGVMKPWL+IGI KYK YW   + Y HP+LQ+CN+H
Sbjct: 561 AAVIHYDGVMKPWLDIGIGKYKRYWNIHVPYHHPYLQQCNIH 602

Length = 603
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|133053 cd06431, GT8_LARGE_C, LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>gnl|CDD|133054 cd06432, GT8_HUGT1_C_like, The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 475
PLN02829639 Probable galacturonosyltransferase 100.0
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 100.0
PLN02718603 Probable galacturonosyltransferase 100.0
PLN02742534 Probable galacturonosyltransferase 100.0
PLN02769629 Probable galacturonosyltransferase 100.0
PLN02523559 galacturonosyltransferase 100.0
PLN02870533 Probable galacturonosyltransferase 100.0
PLN02867535 Probable galacturonosyltransferase 100.0
PLN02659534 Probable galacturonosyltransferase 100.0
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 100.0
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 100.0
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 100.0
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 100.0
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 99.95
PLN00176333 galactinol synthase 99.94
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 99.82
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 99.26
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 98.37
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 95.95
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 95.57
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 94.28
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 92.29
PLN03181453 glycosyltransferase; Provisional 89.97
PF03071434 GNT-I: GNT-I family; InterPro: IPR004139 The biosy 84.33
cd02514334 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es 84.18
cd02515271 Glyco_transf_6 Glycosyltransferase family 6 compri 84.1
COG4575104 ElaB Uncharacterized conserved protein [Function u 83.03
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-128  Score=1021.61  Aligned_cols=443  Identities=55%  Similarity=1.034  Sum_probs=429.4

Q ss_pred             cccccCchHHHHHHHHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHHHHHHHhhc
Q 011913           29 ASLLRVSDEKIKEMKDQVIRAQAYLNFAPPGSNSHLVKELKLRIKEVERAVGAATKDSDLSRRAFRRMNQMEATLDKASH  108 (475)
Q Consensus        29 ~~~~~~~~~~~~~~~d~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (475)
                      ++...++|++||+|||||||||||++|||+++|++|+|||+++|||+||+|||++.|+|||+++.++|++|+++|++||+
T Consensus       175 ~~~~~~~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~  254 (639)
T PLN02829        175 TDQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQ  254 (639)
T ss_pred             cccccCchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhccCCCCCChhHHHHHHHHHHHHHHHHh
Confidence            34445789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCccccchhhhccHHHHhcCcCCCCCcCCCCCCCCCceeE
Q 011913          109 VYPDCSAMATKLRAMTYNAEERVRLQKNQATYLVQLASRTTPKGLHCLSMQLTAEYFALQPEERHLPNQQDLHNPDLHHY  188 (475)
Q Consensus       109 ~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl~~e~~~~~~~~~~~~~~~~~~d~~~ihI  188 (475)
                      +++||+++++|||+|++++||++++||+|++|++||||+|+|||||||+||||+|||.+++..+++|+.++++||+.+|+
T Consensus       255 ~~~d~~~~~~KLr~~l~~~Ee~~~~~~~q~~~l~~laa~t~PK~lHCL~mrLt~Ey~~~~~~~~~~p~~~~l~dp~l~Hy  334 (639)
T PLN02829        255 MQDDCSIVVKKLRAMLHSAEEQLRVHKKQTMFLTQLTAKTLPKGLHCLPLRLTTEYYNLNSSEQQFPNQEKLEDPQLYHY  334 (639)
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccccchhhHHHHHhCChhhccCCChhhccCCccceE
Confidence            99999999999999999999999999999999999999999999999999999999999988888899999999999999


Q ss_pred             EEEcCcchhHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhhccCC-
Q 011913          189 AVFSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLKKENS-  267 (475)
Q Consensus       189 v~~sDn~la~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~~~~~-  267 (475)
                      |++|||+||++|||+|++.|+++|++++||||||++++.+|++||.+|++++++|+|.++++|+|++.+|+||++|+++ 
T Consensus       335 ~ifSdNVLAasVVVnStv~na~~p~k~VFHivTD~~ny~aM~~WF~~n~~~~A~v~V~nie~f~wln~~~~pvl~ql~~~  414 (639)
T PLN02829        335 ALFSDNVLAAAVVVNSTVTNAKHPSKHVFHIVTDRLNYAAMRMWFLVNPPGKATIQVQNIEEFTWLNSSYSPVLKQLGSQ  414 (639)
T ss_pred             EEEecceeEEEeeeehhhhcccCccceEEEEecCccchHHHHHHHhhCCCccceEEEEehhhcccccccccHHHHHhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999988875 


Q ss_pred             --------------------CCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCc
Q 011913          268 --------------------HDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKE  327 (475)
Q Consensus       268 --------------------~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~  327 (475)
                                          ++++|+|+++|+|||||++||+++||||||+||||++||++||++||+|+++|||+||..
T Consensus       415 ~~~~~yf~~~~~~~~~~~k~r~p~ylS~lnY~RfyLPeLLP~LdKVLYLD~DVVVqgDLseLw~iDL~gkviAAVedc~~  494 (639)
T PLN02829        415 SMIDYYFRAHRANSDSNLKYRNPKYLSILNHLRFYLPEIFPKLNKVLFLDDDIVVQKDLTGLWSIDLKGNVNGAVETCGE  494 (639)
T ss_pred             hhhhhhhhccccCcccccccCCcchhhHHHHHHHHHHHHhcccCeEEEEeCCEEeCCChHHHHhCCCCCceEEEeccchh
Confidence                                468999999999999999999999999999999999999999999999999999999976


Q ss_pred             chhhHhhhhhccCCCChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccce
Q 011913          328 SEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHT  407 (475)
Q Consensus       328 ~~~~~~r~~~~Ln~s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i  407 (475)
                         .|+++..+++|++|.+..+|+++.||||+|||||||++||+++++++++.|++.+.+..+|++|++|+++++|+|++
T Consensus       495 ---~f~r~~~~l~fs~p~i~~~Fn~~~CyFNSGVmVINL~~WRe~nITe~y~~wm~~n~~r~L~dlgaLPp~Ll~F~g~i  571 (639)
T PLN02829        495 ---SFHRFDRYLNFSNPLISKNFDPHACGWAYGMNVFDLDEWKRQNITEVYHSWQKLNHDRQLWKLGTLPPGLITFWKRT  571 (639)
T ss_pred             ---hhhhhhhhhhccchHhhhccCCcccceecceEEEeHHHHHHhChHHHHHHHHHHccCCccccccCCChHHHHhcCce
Confidence               67889999999999998899999999999999999999999999999999999888888999999999999999999


Q ss_pred             eEecccccccccCCCCCCchhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccCCccccccccC
Q 011913          408 MALDKRWHVLGLGYDSGVARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFLQRCNLH  474 (475)
Q Consensus       408 ~~Ld~~WN~~~lgy~~~~~~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~~~fl~~c~~~  474 (475)
                      ++||++||++|+||++.+..+.+++|+||||+|++|||...++++|+++|.+|++++++||++||||
T Consensus       572 ~~LD~rWNv~GLGy~~~v~~~~i~~aaIIHynG~~KPWle~~i~~yr~lW~kYl~~~~~fl~~Cni~  638 (639)
T PLN02829        572 YPLDRSWHVLGLGYNPNVNQRDIERAAVIHYNGNMKPWLEIGIPKYRNYWSKYVDYDQVYLRECNIN  638 (639)
T ss_pred             EecChhheecCCCCCcccchhcccCCeEEEECCCCCccccCCcccchHHHHHHHhcCchHHHhCCCC
Confidence            9999999999999998777788999999999999999999999999999999999999999999997

>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>PLN03181 glycosyltransferase; Provisional Back     alignment and domain information
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides Back     alignment and domain information
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens Back     alignment and domain information
>COG4575 ElaB Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 2e-50
3tzt_A276 Glycosyl transferase family 8; structural genomics 2e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 2e-04
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
 Score =  173 bits (440), Expect = 2e-50
 Identities = 50/293 (17%), Positives = 95/293 (32%), Gaps = 41/293 (13%)

Query: 191 FSDN-VLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSID 249
             DN      V   S  +   +  +I FHV+   ++    +        G   I+   ++
Sbjct: 7   ADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVN 65

Query: 250 NFNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRL 309
             ++               + R+ S   + R  L +     +KVL  D DV+V+  L  L
Sbjct: 66  PEDF----------AGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPL 115

Query: 310 WNIDMKGKVIGAV-DTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQE 368
           W+ D+    +GA  D   E           I  +D             +  G+ L +L++
Sbjct: 116 WDTDLGDNWLGASIDLFVE---RQEGYKQKIGMADG---------EYYFNAGVLLINLKK 163

Query: 369 WRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGV--- 425
           WR+  +  +  ++++       ++   +  G   F       + R++ +   Y       
Sbjct: 164 WRRHDIFKMSSEWVEQYKDVMQYQDQDILNG--LFKGGVCYANSRFNFMPTNYAFMANWF 221

Query: 426 -----------ARRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPF 467
                          +   AV HY G  KPW     A     +T+        
Sbjct: 222 ASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTTV 274
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
3tzt_A276 Glycosyl transferase family 8; structural genomics 100.0
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 99.96
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 99.94
1o7q_A289 N-acetyllactosaminide alpha-1,3- galactosyltransfe 89.75
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
Probab=100.00  E-value=1.8e-48  Score=387.63  Aligned_cols=258  Identities=12%  Similarity=0.131  Sum_probs=194.6

Q ss_pred             ceeEEEEcCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhh
Q 011913          185 LHHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATL  262 (475)
Q Consensus       185 ~ihIv~~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl  262 (475)
                      .||||+++|+.|  +++|+|+|++.|+++ +.++|||++++++.+.++.+..+....+++|+++.+++ +++.       
T Consensus         5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~~~~~~i~~~~~~~-~~~~-------   75 (276)
T 3tzt_A            5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRATD-DLFS-------   75 (276)
T ss_dssp             CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHHTTTCEEEEEECC-------------
T ss_pred             eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEEeCH-HHHh-------
Confidence            489999999986  599999999999985 57999999999999887776665444678899998874 1111       


Q ss_pred             hccCCCCCCccchhhhHHhhhhccccC-CCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCC
Q 011913          263 KKENSHDPRYTSALNHLRFYLPDVFPA-LNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINF  341 (475)
Q Consensus       263 ~~~~~~~~~~~S~~~y~Rf~iPellP~-ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~  341 (475)
                       ..  ....++|..+|+||++|+++|+ ++||||||+|+||++||++||++|++|+++|||+||....  +.+....+  
T Consensus        76 -~~--~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~dl~~~~~aav~d~~~~~--~~~~~~~~--  148 (276)
T 3tzt_A           76 -FA--KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTDISDYILAAASHTGKTD--MANNVNRI--  148 (276)
T ss_dssp             -----------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCCCTTSSEEEEEC-----------------
T ss_pred             -cC--ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcCCCCCeEEEEEecccch--HHHHHHHh--
Confidence             11  1235789999999999999995 9999999999999999999999999999999999997531  11111111  


Q ss_pred             CChhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccceeEecc-cccccccC
Q 011913          342 SDPLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDK-RWHVLGLG  420 (475)
Q Consensus       342 s~p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i~~Ld~-~WN~~~lg  420 (475)
                             .++...+|||||||||||++||+.++++++++|++++...  ...+||+++|++|.++++.||+ +||+++ |
T Consensus       149 -------~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~--~~~~DQd~LN~~f~~~~~~Lp~~~wN~~~-~  218 (276)
T 3tzt_A          149 -------RLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMN--LLLPDQDILNAMYGDRIYPLDDLIYNYDA-R  218 (276)
T ss_dssp             --------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----------CHHHHHHHGGGEEEEEHHHHSEET-T
T ss_pred             -------cCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcccc--ccCCChhHHHHHHhCCEEECCchheeeec-c
Confidence                   2334459999999999999999999999999999887643  2357899999999999999999 999996 3


Q ss_pred             CCCC--------Cc-hhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccCCccc
Q 011913          421 YDSG--------VA-RRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYDHPFL  468 (475)
Q Consensus       421 y~~~--------~~-~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~~~fl  468 (475)
                      +...        .. ....++|+||||+|+.|||...+.++|+++||+|+++..++|
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~~Y~~~~~~~~  275 (276)
T 3tzt_A          219 NYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYMSLTKRYL  275 (276)
T ss_dssp             CHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHHHHHHHHHHHT
T ss_pred             cchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHHHHHHHHHHhh
Confidence            3210        01 234678999999999999999999999999999999888776
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 475
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 2e-28
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 4e-05
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score =  111 bits (279), Expect = 2e-28
 Identities = 51/286 (17%), Positives = 94/286 (32%), Gaps = 37/286 (12%)

Query: 191 FSDNVLACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDN 250
             DN  A   V   +V  A    +I FHV+   ++    +        G   I+   ++ 
Sbjct: 7   ADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNP 66

Query: 251 FNWLSTKYNATLKKENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLW 310
            ++     N           R+ S   + R  L +     +KVL  D DV+V+  L  LW
Sbjct: 67  EDFAGFPLN----------IRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLW 116

Query: 311 NIDMKGKVIGAVDTCKESEASFRRMDLFINFSDPLIAKKFDVKACTWAFGMNLFDLQEWR 370
           + D+    +GA                 I  +D             +  G+ L +L++WR
Sbjct: 117 DTDLGDNWLGASIDLFVE--RQEGYKQKIGMADGE---------YYFNAGVLLINLKKWR 165

Query: 371 KRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDSGVA---- 426
           +  +  +  ++++       ++   +  G   F       + R++ +   Y         
Sbjct: 166 RHDIFKMSSEWVEQYKDVMQYQDQDILNGL--FKGGVCYANSRFNFMPTNYAFMANWFAS 223

Query: 427 ----------RRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFIN 462
                        +   AV HY G  KPW     A     +T+   
Sbjct: 224 RHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAG 269
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 100.0
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.95
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 95.76
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 94.83
d1fo8a_343 N-acetylglucosaminyltransferase I {Rabbit (Oryctol 87.84
d1s4na_339 Glycolipid 2-alpha-mannosyltransferase {Baker's ye 82.64
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=100.00  E-value=5.2e-45  Score=358.76  Aligned_cols=255  Identities=18%  Similarity=0.196  Sum_probs=206.3

Q ss_pred             eeEEEEcCcch--hHHHHHHHHHhhcCCCCcEEEEEecCCCCHHHHHHHHhhCCCCCceEEEEEecCCcccchhhhhhhh
Q 011913          186 HHYAVFSDNVL--ACAVVVNSTVSFAKEPEKIVFHVVTDSLNLPAISMWFLLNPPGKATIQIQSIDNFNWLSTKYNATLK  263 (475)
Q Consensus       186 ihIv~~sDn~l--a~~V~I~Slv~ns~~p~~i~fhIvtd~is~~~~~~~~~~~~~~~~~I~~~~i~~~~~l~~~~~pvl~  263 (475)
                      ||||+++|++|  +++|+|+|++.|+++ ..++|||++++++.+..+.+.......+..++++.++.-.     +    .
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~-----~----~   70 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPED-----F----A   70 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHTSGGGTTTEEEEECCGGG-----G----T
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHHHHHcCCeEEEEECCchH-----h----c
Confidence            69999999986  599999999998775 5799999999999998887766555567889998886421     1    0


Q ss_pred             ccCCCCCCccchhhhHHhhhhccccCCCeEEEEecCeeeccccHHhhccCCCCCEEEEeccCCcchhhHhhhhhccCCCC
Q 011913          264 KENSHDPRYTSALNHLRFYLPDVFPALNKVLLFDHDVVVQSDLGRLWNIDMKGKVIGAVDTCKESEASFRRMDLFINFSD  343 (475)
Q Consensus       264 ~~~~~~~~~~S~~~y~Rf~iPellP~ldKVLYLD~DvIV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~r~~~~Ln~s~  343 (475)
                      ... ...+++|.++|+||++|++||+++||||||+|+||++||++||++|++++.+|||.|+...  ....+...++   
T Consensus        71 ~~~-~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~~aa~~d~~~~--~~~~~~~~~~---  144 (282)
T d1ga8a_          71 GFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVE--RQEGYKQKIG---  144 (282)
T ss_dssp             TSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCSEEEEECHHHH--TSTTHHHHTT---
T ss_pred             ccc-ccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccceeeeehhhhhh--hhhhhHHHhC---
Confidence            111 2346789999999999999999999999999999999999999999999999999987542  1111222233   


Q ss_pred             hhhhhccCCCCCceeeeeEEEechHHHHhhHHHHHHHHHHHcCCCCCCCCCCchhhhhhhccceeEecccccccccCCCC
Q 011913          344 PLIAKKFDVKACTWAFGMNLFDLQEWRKRKLTAVYHKYLQLGYKRPLWKAGSLPLGWVTFYKHTMALDKRWHVLGLGYDS  423 (475)
Q Consensus       344 p~i~~~f~~~~~yfNsGVmLinL~~wR~~~it~~~~~~~~~~~~~~l~~~~dq~~lN~~f~~~i~~Ld~~WN~~~lgy~~  423 (475)
                            +.++.+||||||||+|+++||+.+++++++++++++....  ..+||+++|.+|.|++..||.+||++..+|..
T Consensus       145 ------~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~--~~~DQd~LN~~f~~~~~~L~~~~N~~~~~~~~  216 (282)
T d1ga8a_         145 ------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVM--QYQDQDILNGLFKGGVCYANSRFNFMPTNYAF  216 (282)
T ss_dssp             ------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTC--SSTHHHHHHHHHTTSEEEECGGGSBCHHHHHT
T ss_pred             ------CCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCc--ccCchhHHHHHhcCCEEeCCHHHeeccccccc
Confidence                  3346899999999999999999999999999999876543  24789999999999999999999998543221


Q ss_pred             C--------Cc------hhhccCCeEEEccCCCCCcccCCccccHHHHHHHhccC
Q 011913          424 G--------VA------RRDIEQAAVIHYDGVMKPWLEIGIAKYKGYWTKFINYD  464 (475)
Q Consensus       424 ~--------~~------~~~~~~a~IIHy~G~~KPW~~~~~~~y~~lW~~Y~~~~  464 (475)
                      .        ..      .+...+++||||+|+.|||...+.+++...|++|....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~iiHf~G~~KPW~~~~~~~~~~~~~~~~~~~  271 (282)
T d1ga8a_         217 MANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSL  271 (282)
T ss_dssp             CC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSTTCCSTTTHHHHHHHTTC
T ss_pred             cccccccccchhhhhhhhhccCCCEEEeeCCCCCCCCCCCCChhHHHHHHHHHhh
Confidence            0        00      13356799999999999999999899999999998743
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1s4na_ c.68.1.16 (A:) Glycolipid 2-alpha-mannosyltransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure