Citrus Sinensis ID: 011916
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LPL5 | 481 | Protein FIZZY-RELATED 3 O | yes | no | 0.995 | 0.983 | 0.824 | 0.0 | |
| Q8L3Z8 | 483 | Protein FIZZY-RELATED 2 O | no | no | 0.884 | 0.869 | 0.638 | 1e-155 | |
| Q8VZS9 | 475 | Protein FIZZY-RELATED 1 O | no | no | 0.953 | 0.953 | 0.592 | 1e-150 | |
| Q9R1K5 | 493 | Fizzy-related protein hom | yes | no | 0.877 | 0.845 | 0.561 | 1e-128 | |
| Q9UM11 | 496 | Fizzy-related protein hom | yes | no | 0.842 | 0.806 | 0.569 | 1e-126 | |
| Q54KM3 | 754 | Anaphase-promoting comple | yes | no | 0.703 | 0.442 | 0.544 | 1e-112 | |
| O13286 | 556 | WD repeat-containing prot | yes | no | 0.888 | 0.758 | 0.418 | 1e-103 | |
| O94423 | 421 | Meiotic fizzy-related pro | no | no | 0.829 | 0.935 | 0.465 | 1e-103 | |
| Q54MZ3 | 499 | Anaphase-promoting comple | no | no | 0.753 | 0.717 | 0.492 | 1e-102 | |
| Q9JJ66 | 499 | Cell division cycle prote | no | no | 0.837 | 0.797 | 0.417 | 4e-93 |
| >sp|Q8LPL5|FZR3_ARATH Protein FIZZY-RELATED 3 OS=Arabidopsis thaliana GN=FZR3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/483 (82%), Positives = 427/483 (88%), Gaps = 10/483 (2%)
Query: 1 MDLPQTRKTGLNLPAGMNETSLRLETFSGSFRALSNLSSPSSRSSTCSDRFIPCRSSSRL 60
M PQ+ KTGLNLPAGMN+TSLRLETFS SFR +S S S STCSDRFIPCRSSSRL
Sbjct: 1 MASPQSTKTGLNLPAGMNQTSLRLETFSSSFRGIS--SLSSPSKSTCSDRFIPCRSSSRL 58
Query: 61 HTFELIEK--GSPVKEGGNEAYNRLLKSELFGADFGS-FSSPAG-QGS---PMSPSKNML 113
H F+L +K +PVKEGGNEAY+RLLKSELFG+DF S SPAG QGS PMSP NML
Sbjct: 59 HAFDLQDKEPTTPVKEGGNEAYSRLLKSELFGSDFASPLLSPAGGQGSASSPMSPCTNML 118
Query: 114 RFKTDHSSGPNSPYSPS-ILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLN 172
RFKTD S+ S ILG+DNG SS++S PPK PRKVPKTPHKVLDAPSLQDDFYLN
Sbjct: 119 RFKTDRSNSSPSSPFSPSILGNDNGHSSDSSPPPKPPRKVPKTPHKVLDAPSLQDDFYLN 178
Query: 173 LVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQ 232
+VDWSSQNVLAVGLGTCVYLWTASNSKVT+LCDLGP DSVCSVQWTREGSYIS+GT+ GQ
Sbjct: 179 VVDWSSQNVLAVGLGTCVYLWTASNSKVTKLCDLGPNDSVCSVQWTREGSYISIGTSHGQ 238
Query: 233 VQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK 292
VQVWDGTQCKRVRT GGHQTR GVLAWNSRILSSGSRDRNILQHD+RV SD++ KL GHK
Sbjct: 239 VQVWDGTQCKRVRTMGGHQTRTGVLAWNSRILSSGSRDRNILQHDIRVQSDFVSKLVGHK 298
Query: 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352
SEVCGLKWSHDDRELASGGNDNQLLVWN HSQQP L+LTEHTAAVKAI WSPHQSSLLAS
Sbjct: 299 SEVCGLKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLLAS 358
Query: 353 GGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412
GGGTADRCIRFWNT+NG+QLNS+DTGSQVCNLAWSKNVNE+VSTHGYSQNQIM+WKYPSM
Sbjct: 359 GGGTADRCIRFWNTTNGNQLNSIDTGSQVCNLAWSKNVNEIVSTHGYSQNQIMLWKYPSM 418
Query: 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGRT 472
+KV+TLTGHS+RVLYLATSPDGQTIVTGAGDETLRFWNVFPS+K VKDT LWSLGRT
Sbjct: 419 SKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRFWNVFPSVKMQTPVKDTGLWSLGRT 478
Query: 473 HIR 475
IR
Sbjct: 479 QIR 481
|
Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L3Z8|FZR2_ARATH Protein FIZZY-RELATED 2 OS=Arabidopsis thaliana GN=FZR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 548 bits (1413), Expect = e-155, Method: Compositional matrix adjust.
Identities = 275/431 (63%), Positives = 327/431 (75%), Gaps = 11/431 (2%)
Query: 48 SDRFIPCRSSSRLHTFELIEKGSPVKEG---GNEAYNRLLKSELFGADFGSFSSPAGQGS 104
SDRFIP RS S F+L SP K+G G +Y LL++ +FG + G
Sbjct: 61 SDRFIPSRSGSNFALFDL--SPSPSKDGKEDGAGSYATLLRAAMFGPETPEKRDITG--- 115
Query: 105 PMSPSKNMLRFKTDHSSGPNSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPS 164
S S+N+ RFKT+ NS +SP + D+ S S P K PRKVP++P+KVLDAP+
Sbjct: 116 -FSSSRNIFRFKTETHRSLNS-FSPFGVDDDSPGVSH-SGPVKAPRKVPRSPYKVLDAPA 172
Query: 165 LQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI 224
LQDDFYLNLVDWS+QNVLAVGLG CVYLW A +SKVT+LCDLG DSVCSV W G+++
Sbjct: 173 LQDDFYLNLVDWSAQNVLAVGLGNCVYLWNACSSKVTKLCDLGAEDSVCSVGWALRGTHL 232
Query: 225 SVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDY 284
+VGT+ G+VQ+WD ++CKR RT GH+ R G LAW S +LSSGSRD++ILQ D+R D+
Sbjct: 233 AVGTSTGKVQIWDASRCKRTRTMEGHRLRVGALAWGSSVLSSGSRDKSILQRDIRCQEDH 292
Query: 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP 344
+ KLAGHKSEVCGLKWS+D+RELASGGNDN+L VWNQHS QP L+ +EHTAAVKAIAWSP
Sbjct: 293 VSKLAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSP 352
Query: 345 HQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQI 404
H LLASGGGTADRCIRFWNT+ L+S+DT SQVCNLAWSKNVNELVSTHGYSQNQI
Sbjct: 353 HVHGLLASGGGTADRCIRFWNTTTNTHLSSIDTCSQVCNLAWSKNVNELVSTHGYSQNQI 412
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDT 464
+VWKYP+M+K++TLTGH+ RVLYLA SPDGQTIVTGAGDETLRFWNVFPS K+ +
Sbjct: 413 IVWKYPTMSKIATLTGHTYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEI 472
Query: 465 SLWSLGRTHIR 475
GRT IR
Sbjct: 473 GSSFFGRTTIR 483
|
Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Necessary and sufficient for endoreduplication and correct cell expansion. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZS9|FZR1_ARATH Protein FIZZY-RELATED 1 OS=Arabidopsis thaliana GN=FZR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 531 bits (1368), Expect = e-150, Method: Compositional matrix adjust.
Identities = 279/471 (59%), Positives = 334/471 (70%), Gaps = 18/471 (3%)
Query: 11 LNLPAGMNETSLRLETFSGSFRALSNLSSPSSRSSTCSDRFIPCRSSSRLHTFELIEKGS 70
LNLP MN ++ LE+ ++ SPS SDRFIP RS S F+L S
Sbjct: 17 LNLPPSMNRPTVSLESRINRLIDSNHYHSPSK--PIYSDRFIPSRSGSNFALFDL-ASSS 73
Query: 71 PVKEGGNE----AYNRLLKSELFGADFGSFSSPAGQGSPMSPSKNMLRFKTDHSSGPN-- 124
P K+ G E +Y LLK+ LFG S SPS N+ RFKT+ N
Sbjct: 74 PNKKDGKEDGAGSYASLLKTALFGPVTPEKSDVVNG---FSPSGNIFRFKTETQRSLNLY 130
Query: 125 SPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAV 184
P+ ++ S + +P K PRK+ ++P+KVLDAP+LQDDFYLNLVDWS+QNVLAV
Sbjct: 131 PPFDSDVV------SGVSPSPVKSPRKILRSPYKVLDAPALQDDFYLNLVDWSAQNVLAV 184
Query: 185 GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244
GLG CVYLW A +SKVT+LCDLG ++VCSV W G+++++GT+ G VQ+WD +CK +
Sbjct: 185 GLGNCVYLWNACSSKVTKLCDLGVDETVCSVGWALRGTHLAIGTSSGTVQIWDVLRCKNI 244
Query: 245 RTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD 304
RT GH+ R G LAW+S +LSSGSRD++ILQ D+R D++ KL GHKSE+CGLKWS D+
Sbjct: 245 RTMEGHRLRVGALAWSSSVLSSGSRDKSILQRDIRTQEDHVSKLKGHKSEICGLKWSSDN 304
Query: 305 RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364
RELASGGNDN+L VWNQHS QP LR EH AAVKAIAWSPH LLASGGGTADRCIRFW
Sbjct: 305 RELASGGNDNKLFVWNQHSTQPVLRFCEHAAAVKAIAWSPHHFGLLASGGGTADRCIRFW 364
Query: 365 NTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424
NT+ LN VDT SQVCNL WSKNVNELVSTHGYSQNQI+VWKYP+M+K++TLTGHS R
Sbjct: 365 NTTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIVWKYPTMSKLATLTGHSYR 424
Query: 425 VLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGRTHIR 475
VLYLA SPDGQTIVTGAGDETLRFWNVFPS K+ + + S GRT IR
Sbjct: 425 VLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQSRESEIGALSFGRTTIR 475
|
Activator protein that regulates the ubiquitin ligase activity and substrate specificity of the anaphase promoting complex/cyclosome (APC/C). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9R1K5|FZR_MOUSE Fizzy-related protein homolog OS=Mus musculus GN=Fzr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 457 bits (1177), Expect = e-128, Method: Compositional matrix adjust.
Identities = 252/449 (56%), Positives = 295/449 (65%), Gaps = 32/449 (7%)
Query: 32 RALSNLSSPSSRSSTCSDRFIPCRS----SSRLHTFELIEKG--------SPVKEGGNE- 78
R L+ +SP S S DRFIP R+ S H EK + G +
Sbjct: 29 RTLTPANSPVSSPSKHGDRFIPSRAGANWSVNFHRINENEKSPSQNRKAKDATSDNGKDG 88
Query: 79 -AYNRLLKSELFGADFGSFSSPAGQGSPMSPS----KNMLRFK-TDHSSGPN-----SPY 127
AY+ LLK+EL GA P + + PS K + + + S P+ SPY
Sbjct: 89 LAYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEHKGLFTYSLSSKRSSPDDGNDVSPY 148
Query: 128 SPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLG 187
S S + N +P K RK+ K P KVLDAP LQDDFYLNLVDWSS NVL+VGLG
Sbjct: 149 SLSPVS--NKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLG 206
Query: 188 TCVYLWTASNSKVTRLCDLG-PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246
TCVYLW+A S+VTRLCDL GDSV SV W+ G+ ++VGT+ G VQ+WD K++
Sbjct: 207 TCVYLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSM 266
Query: 247 FGGHQTRAGVLAWNSRILSSGSRDRNILQHDLR---VSSDYICKLAGHKSEVCGLKWSHD 303
GH R G LAWN+ LSSGSRDR ILQ D+R + S+ +L GH+ EVCGLKWS D
Sbjct: 267 LEGHTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSER--RLQGHRQEVCGLKWSTD 324
Query: 304 DRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363
+ LASGGNDN+LLVWN S P + TEH AAVKAIAWSPHQ LLASGGGTADRCIRF
Sbjct: 325 HQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRF 384
Query: 364 WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL 423
WNT G L +DTGSQVCNLAWSK+ NELVSTHGYSQNQI+VWKYPS+ +V+ LTGHS
Sbjct: 385 WNTLTGQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTGHSY 444
Query: 424 RVLYLATSPDGQTIVTGAGDETLRFWNVF 452
RVLYLA SPDG+ IVTGAGDETLRFWNVF
Sbjct: 445 RVLYLAMSPDGEAIVTGAGDETLRFWNVF 473
|
Key regulator of ligase activity of the anaphase promoting complex/cyclosome (APC/C), which confers substrate specificity upon the complex. Associates with the APC/C in late mitosis, in replacement of CDC20, and activates the APC/C during anaphase and telophase. The APC/C remains active in degrading substrates to ensure that positive regulators of the cell cycle do not accumulate prematurely. At the G1/S transition FZR1 is phosphorylated, leading to its dissociation from the APC/C. Following DNA damage, it is required for the G2 DNA damage checkpoint: its dephosphorylation and reassociation with the APC/C leads to the ubiquitination of PLK1, preventing entry into mitosis. Mus musculus (taxid: 10090) |
| >sp|Q9UM11|FZR_HUMAN Fizzy-related protein homolog OS=Homo sapiens GN=FZR1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 246/432 (56%), Positives = 287/432 (66%), Gaps = 32/432 (7%)
Query: 49 DRFIPCRS----SSRLHTFELIEKG--------SPVKEGGNE--AYNRLLKSELFGADFG 94
DRFIP R+ S H EK + G + AY+ LLK+EL GA
Sbjct: 46 DRFIPSRAGANWSVNFHRINENEKSPSQNRKAKDATSDNGKDGLAYSALLKNELLGAGIE 105
Query: 95 SFSSPAGQGSPMSPS----KNMLRFK-TDHSSGPN-----SPYSPSILGHDNGFSSEAST 144
P + + PS K + + + S P+ SPYS S + N +
Sbjct: 106 KVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRSSPDDGNDVSPYSLSPVS--NKSQKLLRS 163
Query: 145 PPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLC 204
P K RK+ K P KVLDAP LQDDFYLNLVDWSS NVL+VGLGTCVYLW+A S+VTRLC
Sbjct: 164 PRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVYLWSACTSQVTRLC 223
Query: 205 DLG-PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRI 263
DL GDSV SV W+ G+ ++VGT+ G VQ+WD K++ GH R G LAWN+
Sbjct: 224 DLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEGHTARVGALAWNAEQ 283
Query: 264 LSSGSRDRNILQHDLR---VSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320
LSSGSRDR ILQ D+R + S+ +L GH+ EVCGLKWS D + LASGGNDN+LLVWN
Sbjct: 284 LSSGSRDRMILQRDIRTPPLQSER--RLQGHRQEVCGLKWSTDHQLLASGGNDNKLLVWN 341
Query: 321 QHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ 380
S P + TEH AAVKAIAWSPHQ LLASGGGTADRCIRFWNT G L +DTGSQ
Sbjct: 342 HSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQPLQCIDTGSQ 401
Query: 381 VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG 440
VCNLAWSK+ NELVSTHGYSQNQI+VWKYPS+ +V+ LTGHS RVLYLA SPDG+ IVTG
Sbjct: 402 VCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLAMSPDGEAIVTG 461
Query: 441 AGDETLRFWNVF 452
AGDETLRFWNVF
Sbjct: 462 AGDETLRFWNVF 473
|
Key regulator of ligase activity of the anaphase promoting complex/cyclosome (APC/C), which confers substrate specificity upon the complex. Associates with the APC/C in late mitosis, in replacement of CDC20, and activates the APC/C during anaphase and telophase. The APC/C remains active in degrading substrates to ensure that positive regulators of the cell cycle do not accumulate prematurely. At the G1/S transition FZR1 is phosphorylated, leading to its dissociation from the APC/C. Following DNA damage, it is required for the G2 DNA damage checkpoint: its dephosphorylation and reassociation with the APC/C leads to the ubiquitination of PLK1, preventing entry into mitosis. Homo sapiens (taxid: 9606) |
| >sp|Q54KM3|CDH1_DICDI Anaphase-promoting complex subunit cdh1 OS=Dictyostelium discoideum GN=cdh1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 253/369 (68%), Gaps = 35/369 (9%)
Query: 125 SPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAV 184
SPYS S+L D+ S+P K RK+ KTP K+LDAP ++DDFYLNL+DWSS N+LAV
Sbjct: 372 SPYSLSLLSDDS--QKLLSSPRKPQRKISKTPIKILDAPMIKDDFYLNLIDWSSHNILAV 429
Query: 185 GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWT-REGSYISVGTNLGQVQVWDGTQCKR 243
GL T VYLW A+ S+V++LC++ G V SV W R G ++++G G V +WD + K+
Sbjct: 430 GLDTSVYLWNATTSQVSKLCEMESGQPVSSVGWIQRGGIHLAIGGTDGVVSIWDVNKKKK 489
Query: 244 VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLR-VSSDYICKLAGHKSEVCGLKWSH 302
+R GH TR LAWN+ ILSSG +D+ IL HD+R S++Y +L GH+ E+CGLKWS
Sbjct: 490 IRELQGHNTRVNALAWNNHILSSGGKDKVILHHDVRDCSNNYTNRLVGHRHEICGLKWSP 549
Query: 303 DDRELASGGNDNQLLVWNQ-------------------------------HSQQPTLRLT 331
D ++LASGGNDN L VW+ ++ +P +
Sbjct: 550 DGQQLASGGNDNLLNVWDHSMTQQPQQQHQPPPPPPSSNTSSISQQQQQQNTSKPLYQFK 609
Query: 332 EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVN 391
H AAVKAIAWSPHQ LLASGGGT D+CIRFWNT+ G + S+DTGSQVCNLAWSKN+N
Sbjct: 610 FHYAAVKAIAWSPHQRGLLASGGGTHDKCIRFWNTTTGQSIQSIDTGSQVCNLAWSKNIN 669
Query: 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
ELVSTHGYSQNQI VW YP+M V+TLTGH++RVLYLA SPDGQT+ TGAGD +LRFWN+
Sbjct: 670 ELVSTHGYSQNQITVWNYPTMTPVTTLTGHTMRVLYLAVSPDGQTVCTGAGDNSLRFWNL 729
Query: 452 FPSLKAPAL 460
FPS K +
Sbjct: 730 FPSNKESSF 738
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|O13286|SRW1_SCHPO WD repeat-containing protein srw1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srw1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust.
Identities = 204/488 (41%), Positives = 287/488 (58%), Gaps = 66/488 (13%)
Query: 27 FSGSFRALSNLSSPSSRSSTCSDRFIPCR-SSSRLHT-FELIEKG-SPVKEGGNEA---Y 80
F SF + N P + DRFIP R +S+ L T F +E +PVK+ + A +
Sbjct: 55 FEKSFPSSPNKKRPRTNEG---DRFIPSRDASTELWTGFTKVEGPLTPVKKKQSVADRNF 111
Query: 81 NRLLKSELFGADFGSFS-SPAG-------------------------------------- 101
LL+SELFG++ +F+ SP
Sbjct: 112 TTLLRSELFGSNDETFNNSPIATPNTTIGVSTPRTDSGIDDIELTQRTPPSSSHTSSSIL 171
Query: 102 QGSPMSPSKNMLRF-------------KTDHSSGPN-SPYSPSILGHDNGFSSEASTPPK 147
Q +P++PS+ + + K + PN + YS S + + + + +
Sbjct: 172 QNTPVTPSRKIFHYLSPRDRNKSSYGKKAQYQDNPNRTIYSLSPV---RSITKDLISASR 228
Query: 148 LP-RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL 206
L R++P P++VLDAP L DFYLNL+DW N+LAV L + VYLW+ +S+VT + +
Sbjct: 229 LEGRELPSIPYRVLDAPGLAGDFYLNLLDWGQCNMLAVALASRVYLWSGISSEVTVMHNF 288
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSS 266
P D+V S++W + G++++VGT+ G V++WD CK+ RT GH R G L+WN +LSS
Sbjct: 289 YPTDTVTSLRWVQRGTHLAVGTHNGSVEIWDAATCKKTRTMSGHTERVGALSWNDHVLSS 348
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326
G RD +IL D+R Y L H+ EVCGL+W+ ++ LASGGNDN L+VW++ ++P
Sbjct: 349 GGRDNHILHRDVRAPEHYFRVLTAHRQEVCGLEWNSNENLLASGGNDNALMVWDKFEEKP 408
Query: 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAW 386
H AAVKAI WSPHQ +LASGGGTADR I+ WNT G L+++DTGSQVCNL W
Sbjct: 409 LYSFHNHIAAVKAITWSPHQRGILASGGGTADRTIKLWNTQRGSMLHNIDTGSQVCNLLW 468
Query: 387 SKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETL 446
SK NE +STHG+ +N++ +W YPS+++V TL GH+ RVLYLA SP+G+ IVTGA DETL
Sbjct: 469 SKQTNEFISTHGFMENEVALWNYPSVSRVGTLKGHTDRVLYLAMSPNGENIVTGAADETL 528
Query: 447 RFWNVFPS 454
RFW +F S
Sbjct: 529 RFWKLFDS 536
|
Has a role in cell differentiation and cell cycling by negatively regulating cig2 and cdc12-associated cdc2. Down-regulates the level of cdc13, particularly in a nitrogen deprived environment. Regulator of cell cycle G1 phase progression. Prevents onset of mitosis during the pre-Start G1 period. Required for degradation of cdc13 mitotic cyclin B during G1 arrest but not during mitotic exit. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|O94423|MFR1_SCHPO Meiotic fizzy-related protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mfr1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/417 (46%), Positives = 253/417 (60%), Gaps = 23/417 (5%)
Query: 49 DRFIPCRSSSRLHTFE-------LIEKGSPVKEGGNEAYNR----LLKSELFGADFGSFS 97
DRFIP R+ S F ++ GS ++ + R LL ELFG+
Sbjct: 3 DRFIPIRNVSNEFNFSFQSFKECVLSHGSNLRRKTSGTIQRQFMELLSMELFGSQASRSR 62
Query: 98 SPAGQGSPMSPSKNMLRF--KTDHSSGPNSPYSPSILGHDNGFSSEASTPPKLPRKVPKT 155
+ K ML + +S P SP S +L P K R PKT
Sbjct: 63 AFYYGEDKRKIEKKMLDTPDRKSYSLSPISPQSQDML----------RQPQKPKRAFPKT 112
Query: 156 PHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSV 215
P+K+LDAP L++DFYLNL+DW NVLAVGL + +YLW+A++ KV +L D G + V SV
Sbjct: 113 PYKILDAPYLKNDFYLNLLDWGQSNVLAVGLASSIYLWSAASGKVVQLHDFGATNHVTSV 172
Query: 216 QWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQ 275
WT +G+ ++VGT+ G + +WD K VR+ GH R LAWN L+SG +D IL
Sbjct: 173 LWTGKGTQLAVGTDSGVIYIWDIESTKSVRSLKGHSERVAALAWNDNTLTSGGKDEVILH 232
Query: 276 HDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTA 335
HDLR + H+ E+CGL+W +LASGGNDN L VW+ S +P + EHTA
Sbjct: 233 HDLRAPGCCAEMMKVHEQEICGLQWDRSLGQLASGGNDNNLFVWDYRSSRPLHKFEEHTA 292
Query: 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVS 395
AVKAI WSPHQ +LASGGGT DRC+ NT G N +DTGSQVCN+AWSK NE+V+
Sbjct: 293 AVKAIGWSPHQRGILASGGGTIDRCLTIHNTLTGRLQNKLDTGSQVCNMAWSKTSNEIVT 352
Query: 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452
THG+++NQ+ +WKYPS+ ++ LT H+ RVLYL+ SPDGQ+IVTGAGDETLRFW +F
Sbjct: 353 THGFAKNQVSLWKYPSLKNIANLTAHTNRVLYLSMSPDGQSIVTGAGDETLRFWKLF 409
|
Meiosis-specific activator of the anaphase promoting complex/cyclosome (APC/C). Involved in cdc13 degradation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54MZ3|CDC20_DICDI Anaphase-promoting complex subunit cdc20 OS=Dictyostelium discoideum GN=cdc20 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/384 (49%), Positives = 251/384 (65%), Gaps = 26/384 (6%)
Query: 80 YNRLLKSELFGADFG-------SFSSPAGQGSPMSPSKNMLRFKTDHSSGPNSPYSPSIL 132
Y L ++LF ++ G SF S A G+ +S S N LR + ++P S+
Sbjct: 101 YKDTLANQLFESNSGDLESKILSFKSKAPVGN-VSSSTNSLRVLYSQNQVGSTPTDQSL- 158
Query: 133 GHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYL 192
K R++P+ P ++LDAP + DD+YLNL+DWSSQNV+A+ LG VYL
Sbjct: 159 -------------KKQFRQIPQQPERILDAPDIVDDYYLNLLDWSSQNVIAIPLGQTVYL 205
Query: 193 WTASNSKVTRLCDLGPGDS-VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ 251
W A+ S++ RL + D + S+QWT++G+Y++VGTN +Q+WD K+VR GH
Sbjct: 206 WNATTSEIQRLFQVEQQDDYITSLQWTKDGNYLAVGTNSCTIQLWDVAHTKKVRELRGHA 265
Query: 252 TRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG 311
R G LAWN ILSSGS D NI HD+RV + ++ L+GH EVCGLKWSHD +LASGG
Sbjct: 266 GRVGALAWNDYILSSGSSDTNIFNHDVRVQNHHVSTLSGHSQEVCGLKWSHDGGQLASGG 325
Query: 312 NDNQLLVWNQHSQQ---PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368
NDN + +W+ +S+ P +HTAAV+A+AW P Q +LLA+GGG ADR IRFWNT
Sbjct: 326 NDNIINIWDINSENFETPAHTFEQHTAAVRALAWCPFQPNLLATGGGAADRTIRFWNTIT 385
Query: 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428
G LN+VDT SQVC++ WS ELVS+HGYSQNQ+ VWKYPSM K + LTGH+ R L+
Sbjct: 386 GVCLNTVDTMSQVCSIQWSTTYRELVSSHGYSQNQLCVWKYPSMVKCAELTGHTSRALHT 445
Query: 429 ATSPDGQTIVTGAGDETLRFWNVF 452
A SPDG+T+V+ + DETLRFW VF
Sbjct: 446 AISPDGETVVSASADETLRFWRVF 469
|
Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q9JJ66|CDC20_MOUSE Cell division cycle protein 20 homolog OS=Mus musculus GN=Cdc20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 342 bits (877), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 186/445 (41%), Positives = 262/445 (58%), Gaps = 47/445 (10%)
Query: 49 DRFIPCRSSSRLHTFELI--------EKGSPVKEGGNEAYNRLLKSELFGADFGSFSSPA 100
DRFIP RS+S++ + ++G+P K+ +A++ L G D
Sbjct: 77 DRFIPQRSASQMEVASFLLSKENQPEDRGTPTKKEHQKAWSL----NLNGFDV------- 125
Query: 101 GQGSPMSPSKNMLRFKTDHSSGPNSPYSPSILGHDNGFS---SEASTP---PKLPRKVPK 154
+LR + P G+ N S+ +TP K R +P
Sbjct: 126 -------EEAKILRLSGKPQNAPE--------GYQNRLKVLYSQKATPGSSRKTCRYIPS 170
Query: 155 TPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVC 213
P ++LDAP +++D+YLNLVDWSS NVLAV L VYLW A + + +L + PGD +
Sbjct: 171 LPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWNAGSGDILQLLQMEQPGDYIS 230
Query: 214 SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNI 273
SV W +EG+Y++VGT+ +VQ+WD Q KR+R H R L+WNS ILSSGSR +I
Sbjct: 231 SVAWIKEGNYLAVGTSNAEVQLWDVQQQKRLRNMTSHSARVSSLSWNSYILSSGSRSGHI 290
Query: 274 LQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW----NQHSQQPTLR 329
HD+RV+ ++ L+GH EVCGL+W+ D R LASGGNDN + VW + P
Sbjct: 291 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNIVNVWPSGPGESGWAPLQT 350
Query: 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKN 389
T+H AVKA+AW P QS++LA+GGGT+DR IR WN +G L++VD SQVC++ WS +
Sbjct: 351 FTQHQGAVKAVAWCPWQSNILATGGGTSDRHIRIWNVCSGACLSAVDVHSQVCSILWSPH 410
Query: 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFW 449
EL+S HG++QNQ+++WKYP+MAKV+ L GH+ RVL L SPDG T+ + A DETLR W
Sbjct: 411 YKELISGHGFAQNQLVIWKYPTMAKVAELKGHTARVLGLTMSPDGATVASAAADETLRLW 470
Query: 450 NVFPSLKAPALVKDTSLWSLGRTHI 474
F PAL ++ S+ ++ +
Sbjct: 471 RCFE--MDPALRREREKASVAKSSL 493
|
Required for full ubiquitin ligase activity of the anaphase promoting complex/cyclosome (APC/C) and may confer substrate specificity upon the complex. Is regulated by MAD2L1: in metaphase the MAD2L1-CDC20-APC/C ternary complex is inactive and in anaphase the CDC20-APC/C binary complex is active in degrading substrates. The CDC20-APC/C complex positively regulates the formation of synaptic vesicle clustering at active zone to the presynaptic membrane in postmitotic neurons. CDC20-APC/C-induced degradation of NEUROD2 induces presynaptic differentiation. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| 225449464 | 471 | PREDICTED: protein FIZZY-RELATED 3 [Viti | 0.991 | 1.0 | 0.877 | 0.0 | |
| 224109500 | 485 | predicted protein [Populus trichocarpa] | 0.997 | 0.977 | 0.851 | 0.0 | |
| 449450026 | 475 | PREDICTED: protein FIZZY-RELATED 3-like | 0.993 | 0.993 | 0.866 | 0.0 | |
| 224101009 | 485 | predicted protein [Populus trichocarpa] | 0.997 | 0.977 | 0.855 | 0.0 | |
| 356569370 | 489 | PREDICTED: protein FIZZY-RELATED 3-like | 0.991 | 0.963 | 0.801 | 0.0 | |
| 255581529 | 493 | WD-repeat protein, putative [Ricinus com | 0.987 | 0.951 | 0.855 | 0.0 | |
| 351727655 | 483 | WD-repeat cell cycle regulatory protein | 0.966 | 0.950 | 0.788 | 0.0 | |
| 30684620 | 481 | protein FIZZY-related 3 [Arabidopsis tha | 0.995 | 0.983 | 0.824 | 0.0 | |
| 297811493 | 481 | WD-40 repeat family protein [Arabidopsis | 0.995 | 0.983 | 0.819 | 0.0 | |
| 283837095 | 499 | cell cycle switch 52B [Solanum lycopersi | 0.987 | 0.939 | 0.788 | 0.0 |
| >gi|225449464|ref|XP_002283264.1| PREDICTED: protein FIZZY-RELATED 3 [Vitis vinifera] gi|296086214|emb|CBI31655.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/475 (87%), Positives = 446/475 (93%), Gaps = 4/475 (0%)
Query: 1 MDLPQTRKTGLNLPAGMNETSLRLETFSGSFRALSNLSSPSSRSSTCSDRFIPCRSSSRL 60
MD + RK+GLNLPAGM+ETSLRLETFSGS+RA+SNLSSPS ++++CSDRFIPCRSSSRL
Sbjct: 1 MDSSERRKSGLNLPAGMSETSLRLETFSGSYRAISNLSSPS-KATSCSDRFIPCRSSSRL 59
Query: 61 HTFELIEKGSPVKEGGNEAYNRLLKSELFGADFGSFSSPAGQGSPMSPSKNMLRFKTDHS 120
HTF LIEK SPVKEGGNEAY RLLK ELFG+DFGS SPAGQGSPMSPSKNMLRFKTDHS
Sbjct: 60 HTFGLIEKASPVKEGGNEAYFRLLKQELFGSDFGS--SPAGQGSPMSPSKNMLRFKTDHS 117
Query: 121 SGPNSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQN 180
GPNSP+SPSI G D+GFSSEASTPPK PRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQN
Sbjct: 118 -GPNSPFSPSIFGPDSGFSSEASTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQN 176
Query: 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ 240
VLAVGLGTCVYLWTAS SKVT+LCDLGP DSVCSVQWTREGSYIS+GT+LGQVQVWDGTQ
Sbjct: 177 VLAVGLGTCVYLWTASTSKVTKLCDLGPSDSVCSVQWTREGSYISIGTHLGQVQVWDGTQ 236
Query: 241 CKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKW 300
CK+VRT GHQTR GVLAW+SRILSSGSRDRNILQHDLRVS+D++ KL GHKSEVCGLKW
Sbjct: 237 CKKVRTMSGHQTRTGVLAWSSRILSSGSRDRNILQHDLRVSNDFVSKLVGHKSEVCGLKW 296
Query: 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC 360
SHDDRELASGGNDNQLLVWNQHSQQP L+LTEHTAAVKAIAWSPHQS LLASGGGTADRC
Sbjct: 297 SHDDRELASGGNDNQLLVWNQHSQQPVLKLTEHTAAVKAIAWSPHQSGLLASGGGTADRC 356
Query: 361 IRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG 420
IRFW+T+NG+QLN VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM KV+TLTG
Sbjct: 357 IRFWSTTNGNQLNHVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMTKVATLTG 416
Query: 421 HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGRTHIR 475
HSLRVLYLA SPDGQTIVTGAGDETLRFWN+FPS+K PA VKDT +WS+GRTHIR
Sbjct: 417 HSLRVLYLAMSPDGQTIVTGAGDETLRFWNIFPSMKTPAPVKDTGVWSMGRTHIR 471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109500|ref|XP_002315217.1| predicted protein [Populus trichocarpa] gi|222864257|gb|EEF01388.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 827 bits (2137), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/486 (85%), Positives = 438/486 (90%), Gaps = 12/486 (2%)
Query: 1 MDLPQTRKTGLNLPAGMNETSLRLETFSGS--FRALSNLSSPSS--------RSSTCSDR 50
MD RK+GLNLP+GMNETSLRLETFS S FRA++ +SSP + ++S+CSDR
Sbjct: 1 MDSTPRRKSGLNLPSGMNETSLRLETFSSSSSFRAVTCVSSPRAISSLSSPSKTSSCSDR 60
Query: 51 FIPCRSSSRLHTFELIEKGSPVKEGGNEAYNRLLKSELFGADFGSFSSPAG-QGSPMSPS 109
FIPCRSSSRL TF LIEKGSPVKEGGNEAY RLLKSELFG+DFGSFSSPAG QG SPS
Sbjct: 61 FIPCRSSSRLQTFGLIEKGSPVKEGGNEAYARLLKSELFGSDFGSFSSPAGGQGGLGSPS 120
Query: 110 KNMLRFKTDHSSGPNSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDF 169
KNMLRFKTDHS GPNSPYSPSILGHD+G SSE+ST PK PRKVPKTPHKVLDAPSLQDDF
Sbjct: 121 KNMLRFKTDHS-GPNSPYSPSILGHDSGISSESSTTPKPPRKVPKTPHKVLDAPSLQDDF 179
Query: 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN 229
YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGP DSVCS+QWTREGSYIS+GT+
Sbjct: 180 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPNDSVCSLQWTREGSYISIGTH 239
Query: 230 LGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLA 289
LGQVQVWDGTQCKRVRT GGHQTR VLAWNSR L+SGSRDRNILQHDLRVSSD++ KL
Sbjct: 240 LGQVQVWDGTQCKRVRTMGGHQTRTSVLAWNSRTLASGSRDRNILQHDLRVSSDHVSKLI 299
Query: 290 GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSL 349
GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ P L LTEHTAAVKAIAWSPHQS L
Sbjct: 300 GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQLPVLTLTEHTAAVKAIAWSPHQSGL 359
Query: 350 LASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409
LASGGGTADRCIRFWNT+NGHQLN VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY
Sbjct: 360 LASGGGTADRCIRFWNTTNGHQLNHVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 419
Query: 410 PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSL 469
PS++KV+TL GHS+RVLYLA SPDGQTIVTGAGDETLRFWNVFPS+K VKDT LWSL
Sbjct: 420 PSLSKVATLVGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTQTPVKDTGLWSL 479
Query: 470 GRTHIR 475
GRT IR
Sbjct: 480 GRTQIR 485
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450026|ref|XP_004142765.1| PREDICTED: protein FIZZY-RELATED 3-like [Cucumis sativus] gi|449483830|ref|XP_004156705.1| PREDICTED: protein FIZZY-RELATED 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/478 (86%), Positives = 442/478 (92%), Gaps = 6/478 (1%)
Query: 1 MDLPQTRKTGLNLPAGMNETSLRLETFSGSFRALSNLSSPSSRSSTCSDRFIPCRSSSRL 60
MD PQ RK GLNLPAGM E SLRLETFSGSFRA+SNLSSPS ++STCSDRFIPCRSSSRL
Sbjct: 1 MDSPQARKAGLNLPAGMAERSLRLETFSGSFRAISNLSSPS-KTSTCSDRFIPCRSSSRL 59
Query: 61 HTFELIEKGSPVKEGGNEAYNRLLKSELFGADFGSFSSPAG---QGSPMSPSKNMLRFKT 117
HTF LIEK SPVKEGGNEAY+RLLK+ELFG+DFGSFS PAG QGSPMSPSKNMLRFKT
Sbjct: 60 HTFGLIEKASPVKEGGNEAYSRLLKTELFGSDFGSFS-PAGSQGQGSPMSPSKNMLRFKT 118
Query: 118 DHSSGPNSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWS 177
DHS+ PNSPYSPSI D G+SSE STPPK PRKVPKTPHKVLDAPSLQDDFYLNLVDWS
Sbjct: 119 DHST-PNSPYSPSIFSQDAGYSSEISTPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWS 177
Query: 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWD 237
SQNVLAVGLGTCVYLW+ASN KVT+LCDLGP D VCSVQWTREGSYIS+GTNLGQVQ+WD
Sbjct: 178 SQNVLAVGLGTCVYLWSASNCKVTKLCDLGPNDGVCSVQWTREGSYISIGTNLGQVQIWD 237
Query: 238 GTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCG 297
G+QCK+VRT GGHQTR GVLAWNSRIL+SGSRDRNILQHDLRV+S+++ KL GHKSEVCG
Sbjct: 238 GSQCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDLRVASEFVNKLVGHKSEVCG 297
Query: 298 LKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357
LKWS+DDRELASGGNDNQLLVWNQHSQQP LRLTEHTAAVKAIAWSPHQS LLASGGGTA
Sbjct: 298 LKWSNDDRELASGGNDNQLLVWNQHSQQPVLRLTEHTAAVKAIAWSPHQSGLLASGGGTA 357
Query: 358 DRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST 417
DRCIRFWNT+NGHQL SVDTGSQVCNL+WSKNVNELVSTHGYSQNQIMVWKYPSMAKV+T
Sbjct: 358 DRCIRFWNTANGHQLESVDTGSQVCNLSWSKNVNELVSTHGYSQNQIMVWKYPSMAKVAT 417
Query: 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGRTHIR 475
LTGH++RVLYLA SPDGQTIVTGAGDETLRFWN+FPS+K V+DT LWSLGRT IR
Sbjct: 418 LTGHTMRVLYLAMSPDGQTIVTGAGDETLRFWNIFPSMKTQTPVRDTGLWSLGRTQIR 475
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224101009|ref|XP_002312104.1| predicted protein [Populus trichocarpa] gi|222851924|gb|EEE89471.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/486 (85%), Positives = 442/486 (90%), Gaps = 12/486 (2%)
Query: 1 MDLPQTRKTGLNLPAGMNETSLRLETFSGS--FRALSNLSSPSS--------RSSTCSDR 50
MD RK+GLNLP+GMNETSLRLETFS S FRA++ +SSP + ++S+CSDR
Sbjct: 1 MDSTPRRKSGLNLPSGMNETSLRLETFSSSSSFRAVTCVSSPRAISSLSSPSKTSSCSDR 60
Query: 51 FIPCRSSSRLHTFELIEKGSPVKEGGNEAYNRLLKSELFGADFGSFSSPAG-QGSPMSPS 109
FIPCRSSSRLHTF L+EKGSPVKEGGNEAY RLLKSELFG+DFGSFSSPAG QG SP+
Sbjct: 61 FIPCRSSSRLHTFGLVEKGSPVKEGGNEAYARLLKSELFGSDFGSFSSPAGGQGGLSSPN 120
Query: 110 KNMLRFKTDHSSGPNSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDF 169
KNMLRFKTDHS GPNSP+SPSILGHD+G SSE+STPPK PRKVPKTPHKVLDAPSLQDDF
Sbjct: 121 KNMLRFKTDHS-GPNSPFSPSILGHDSGISSESSTPPKPPRKVPKTPHKVLDAPSLQDDF 179
Query: 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN 229
YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGP DSVCSVQWTREGSYISVGT+
Sbjct: 180 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPNDSVCSVQWTREGSYISVGTH 239
Query: 230 LGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLA 289
LGQVQVWDGTQCKRVRT GGHQTR GVLAWNSR L+SGSRDR+ILQHDLR+SSDY+ KL
Sbjct: 240 LGQVQVWDGTQCKRVRTMGGHQTRTGVLAWNSRTLASGSRDRHILQHDLRISSDYVSKLI 299
Query: 290 GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSL 349
GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ P L+LTEHTAAVKAIAWSPHQS L
Sbjct: 300 GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQLPILKLTEHTAAVKAIAWSPHQSGL 359
Query: 350 LASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409
LASGGGTADRCIRFWNT+NGHQLN VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY
Sbjct: 360 LASGGGTADRCIRFWNTTNGHQLNYVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 419
Query: 410 PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSL 469
PS++KV+TL GHSLRVLYLA SPDGQTIVTGAGDETLRFWNVFPS+K VKDT LWSL
Sbjct: 420 PSLSKVATLVGHSLRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKTQTPVKDTGLWSL 479
Query: 470 GRTHIR 475
GRT IR
Sbjct: 480 GRTQIR 485
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569370|ref|XP_003552875.1| PREDICTED: protein FIZZY-RELATED 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/488 (80%), Positives = 428/488 (87%), Gaps = 17/488 (3%)
Query: 5 QTRKTGLNLPAGMNETSLRLETFSGS----------FRALSNLSSPSSRSSTCSDRFIPC 54
+ +K+GLNLPAGM+ TSLRL+T + S R++SNL+SPS +S CSDRFIPC
Sbjct: 2 EAKKSGLNLPAGMSGTSLRLDTAAASSISTLNSPSSLRSISNLTSPSKSNSACSDRFIPC 61
Query: 55 RSSSRLHTFELIEKGSPVKEGGNEAYNRLLKSELFGADFGSFSSP------AGQGSPMSP 108
RSSSRLHTF L+++ SPVKEG NEAY+RLLKSELFG+DF S S A SP+SP
Sbjct: 62 RSSSRLHTFGLLDRPSPVKEGSNEAYSRLLKSELFGSDFASPSLSLSSPAGAAPPSPLSP 121
Query: 109 SKNMLRFKTDHSSGPNSPYSPSILGHDNGFSSEASTPP-KLPRKVPKTPHKVLDAPSLQD 167
SKNMLRFKTDHS P+SPYSPSILG N F S++STPP K PRKV KTPHKVLDAPSLQD
Sbjct: 122 SKNMLRFKTDHSVAPSSPYSPSILGQQNAFPSDSSTPPPKPPRKVLKTPHKVLDAPSLQD 181
Query: 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG 227
DFYLNLVDWS+QNVLAVGLGTCVYLW+ASNSKVT+LCDLGP D VCSVQWTREGS+IS+G
Sbjct: 182 DFYLNLVDWSTQNVLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTREGSFISIG 241
Query: 228 TNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICK 287
TNLGQVQVWDGTQCK+VRT GGHQTR GVLAWNSRIL+SGSRDRNILQHD+R+ D++ K
Sbjct: 242 TNLGQVQVWDGTQCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRIPGDFVSK 301
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
L GHKSEVCGLKWS DDRELASGGNDNQLLVWNQHSQQP LRLTEHTAAVKAIAWSPHQS
Sbjct: 302 LVGHKSEVCGLKWSSDDRELASGGNDNQLLVWNQHSQQPVLRLTEHTAAVKAIAWSPHQS 361
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407
SLL SGGGTADRCIRFWNT+NGHQLN +DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW
Sbjct: 362 SLLVSGGGTADRCIRFWNTTNGHQLNCLDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 421
Query: 408 KYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLW 467
KYPS++KV+TLTGHS+RVLYLA SPDGQTIVTGAGDETLRFWNVFPS+KAP VKDT LW
Sbjct: 422 KYPSLSKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKAPVPVKDTGLW 481
Query: 468 SLGRTHIR 475
SLGRT IR
Sbjct: 482 SLGRTQIR 489
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581529|ref|XP_002531570.1| WD-repeat protein, putative [Ricinus communis] gi|223528800|gb|EEF30806.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 784 bits (2024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 420/491 (85%), Positives = 440/491 (89%), Gaps = 22/491 (4%)
Query: 4 PQTRKTGLNLPAGMNETSLRLETF---SGSFRALSNLSSPSS---------RSSTCSDRF 51
P RK+GLNLP+GMN+TSLRL+TF SG FRA S SSP + +SSTCSDRF
Sbjct: 6 PPRRKSGLNLPSGMNQTSLRLDTFPANSGGFRA-SVSSSPRAISSLSSPSSKSSTCSDRF 64
Query: 52 IPCRSSSRLHTFELIEK-GSPVKEGGNEAYNRLLKSELFGADFGSFSSPAGQGSPM---- 106
IPCRSSSRLHTF L+EK GSPVKEGGNEAY+RLLKSELFG+DF S SPAG G
Sbjct: 65 IPCRSSSRLHTFGLLEKKGSPVKEGGNEAYSRLLKSELFGSDFLS-CSPAGGGGGQGGSA 123
Query: 107 --SPSKNMLRFKTDHSSGPNSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPS 164
SPSKNMLRF+TD S GPNSPYSPSILG D+G SSE STPPK PRKVPKTPHKVLDAPS
Sbjct: 124 LSSPSKNMLRFRTDLS-GPNSPYSPSILGQDSGISSEVSTPPKPPRKVPKTPHKVLDAPS 182
Query: 165 LQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI 224
LQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVT+LCDLGP DSVCSVQWTREGSYI
Sbjct: 183 LQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTKLCDLGPHDSVCSVQWTREGSYI 242
Query: 225 SVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDY 284
S+GT LGQVQVWDGTQCKRVRT GGHQTR GVLAWNSRILSSGSRDRNILQHDLRVSSD+
Sbjct: 243 SIGTGLGQVQVWDGTQCKRVRTMGGHQTRTGVLAWNSRILSSGSRDRNILQHDLRVSSDF 302
Query: 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP 344
+ KL GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP L+LTEHTAAVKAIAWSP
Sbjct: 303 VSKLVGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPVLKLTEHTAAVKAIAWSP 362
Query: 345 HQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQI 404
HQSSLLASGGGTADRCIRFWNT+NGHQLN VDTGSQVCNLAWSKNVNELVSTHGYSQNQI
Sbjct: 363 HQSSLLASGGGTADRCIRFWNTTNGHQLNHVDTGSQVCNLAWSKNVNELVSTHGYSQNQI 422
Query: 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDT 464
MVWKYPS+AKV+TLTGHSLRVLYLA SPDGQTIVTGAGDETLRFWNVFPS+KAPA VKDT
Sbjct: 423 MVWKYPSLAKVATLTGHSLRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKAPAPVKDT 482
Query: 465 SLWSLGRTHIR 475
LWSLGRTHIR
Sbjct: 483 GLWSLGRTHIR 493
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351727655|ref|NP_001237168.1| WD-repeat cell cycle regulatory protein [Glycine max] gi|42362327|gb|AAS13372.1| WD-repeat cell cycle regulatory protein [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 769 bits (1985), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/483 (78%), Positives = 414/483 (85%), Gaps = 24/483 (4%)
Query: 17 MNETSLRLETFSG---------------SFRALSNLSSPSSRSSTCSDRFIPCRSSSRLH 61
M+ TSLRL+T S R++SNL+SPS +S CSDRFIPCRSSSRLH
Sbjct: 1 MSGTSLRLDTAPASSSFRSSISTLNSPSSLRSISNLTSPSKSNSACSDRFIPCRSSSRLH 60
Query: 62 TFELIEKGSPVKEGGNEAYNRLLKSELFGADFGSFSSPAGQGSP--------MSPSKNML 113
TF L+++ SPVKEG NEAY+RLLKSELFG+DF S S + +SPSKNML
Sbjct: 61 TFGLVDRPSPVKEGSNEAYSRLLKSELFGSDFASPSLSSLSSPAGAAAPPSPLSPSKNML 120
Query: 114 RFKTDHSSGPNSPYSPSILGHDNGFSSEASTP-PKLPRKVPKTPHKVLDAPSLQDDFYLN 172
RFKTD + P+SPYSPSILG NGF+S++STP PK PRKVPKTPHK LDAPSLQDDFYLN
Sbjct: 121 RFKTDTAGAPSSPYSPSILGQQNGFTSDSSTPAPKPPRKVPKTPHKGLDAPSLQDDFYLN 180
Query: 173 LVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQ 232
LVDWS+QNVLAVGLGT VYLW+ASNSKVT+LCDLGP D VCSVQWTREGS+IS+GTNLGQ
Sbjct: 181 LVDWSTQNVLAVGLGTGVYLWSASNSKVTKLCDLGPYDGVCSVQWTREGSFISIGTNLGQ 240
Query: 233 VQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK 292
VQVWDGTQCK+VRT GGHQTR GVLAWNSRIL+SGSRDRNILQHD+RV D++ KL GHK
Sbjct: 241 VQVWDGTQCKKVRTMGGHQTRTGVLAWNSRILASGSRDRNILQHDMRVPGDFVSKLVGHK 300
Query: 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352
SEVCGLKWS DDRELASGGNDNQLLVWNQHSQQP LRLTEHTAAVKAIAWSPHQSSLL S
Sbjct: 301 SEVCGLKWSCDDRELASGGNDNQLLVWNQHSQQPVLRLTEHTAAVKAIAWSPHQSSLLVS 360
Query: 353 GGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412
GGGTADRCIRFWNT+NGHQLN VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS+
Sbjct: 361 GGGTADRCIRFWNTTNGHQLNCVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSL 420
Query: 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGRT 472
KV+TLTGHS+RVLYLA SPDGQTIVTGAGDETLRFWNVFPS+KAPA VKDT LWSLGRT
Sbjct: 421 TKVATLTGHSMRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSMKAPAPVKDTGLWSLGRT 480
Query: 473 HIR 475
IR
Sbjct: 481 QIR 483
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30684620|ref|NP_196888.2| protein FIZZY-related 3 [Arabidopsis thaliana] gi|334187668|ref|NP_001190305.1| protein FIZZY-related 3 [Arabidopsis thaliana] gi|75330295|sp|Q8LPL5.1|FZR3_ARATH RecName: Full=Protein FIZZY-RELATED 3; AltName: Full=Cell cycle switch protein CCS52B gi|20466231|gb|AAM20433.1| cell cycle switch protein [Arabidopsis thaliana] gi|25084105|gb|AAN72176.1| cell cycle switch protein [Arabidopsis thaliana] gi|332004565|gb|AED91948.1| protein FIZZY-related 3 [Arabidopsis thaliana] gi|332004566|gb|AED91949.1| protein FIZZY-related 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 756 bits (1951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/483 (82%), Positives = 427/483 (88%), Gaps = 10/483 (2%)
Query: 1 MDLPQTRKTGLNLPAGMNETSLRLETFSGSFRALSNLSSPSSRSSTCSDRFIPCRSSSRL 60
M PQ+ KTGLNLPAGMN+TSLRLETFS SFR +S S S STCSDRFIPCRSSSRL
Sbjct: 1 MASPQSTKTGLNLPAGMNQTSLRLETFSSSFRGIS--SLSSPSKSTCSDRFIPCRSSSRL 58
Query: 61 HTFELIEK--GSPVKEGGNEAYNRLLKSELFGADFGS-FSSPAG-QGS---PMSPSKNML 113
H F+L +K +PVKEGGNEAY+RLLKSELFG+DF S SPAG QGS PMSP NML
Sbjct: 59 HAFDLQDKEPTTPVKEGGNEAYSRLLKSELFGSDFASPLLSPAGGQGSASSPMSPCTNML 118
Query: 114 RFKTDHSSGPNSPYSPS-ILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLN 172
RFKTD S+ S ILG+DNG SS++S PPK PRKVPKTPHKVLDAPSLQDDFYLN
Sbjct: 119 RFKTDRSNSSPSSPFSPSILGNDNGHSSDSSPPPKPPRKVPKTPHKVLDAPSLQDDFYLN 178
Query: 173 LVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQ 232
+VDWSSQNVLAVGLGTCVYLWTASNSKVT+LCDLGP DSVCSVQWTREGSYIS+GT+ GQ
Sbjct: 179 VVDWSSQNVLAVGLGTCVYLWTASNSKVTKLCDLGPNDSVCSVQWTREGSYISIGTSHGQ 238
Query: 233 VQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK 292
VQVWDGTQCKRVRT GGHQTR GVLAWNSRILSSGSRDRNILQHD+RV SD++ KL GHK
Sbjct: 239 VQVWDGTQCKRVRTMGGHQTRTGVLAWNSRILSSGSRDRNILQHDIRVQSDFVSKLVGHK 298
Query: 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352
SEVCGLKWSHDDRELASGGNDNQLLVWN HSQQP L+LTEHTAAVKAI WSPHQSSLLAS
Sbjct: 299 SEVCGLKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLLAS 358
Query: 353 GGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412
GGGTADRCIRFWNT+NG+QLNS+DTGSQVCNLAWSKNVNE+VSTHGYSQNQIM+WKYPSM
Sbjct: 359 GGGTADRCIRFWNTTNGNQLNSIDTGSQVCNLAWSKNVNEIVSTHGYSQNQIMLWKYPSM 418
Query: 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGRT 472
+KV+TLTGHS+RVLYLATSPDGQTIVTGAGDETLRFWNVFPS+K VKDT LWSLGRT
Sbjct: 419 SKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRFWNVFPSVKMQTPVKDTGLWSLGRT 478
Query: 473 HIR 475
IR
Sbjct: 479 QIR 481
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811493|ref|XP_002873630.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297319467|gb|EFH49889.1| WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 755 bits (1950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/483 (81%), Positives = 425/483 (87%), Gaps = 10/483 (2%)
Query: 1 MDLPQTRKTGLNLPAGMNETSLRLETFSGSFRALSNLSSPSSRSSTCSDRFIPCRSSSRL 60
M PQ+ KTGLNLPAGMN+TSLRLETFS SFR +S S S STCSDRFIPCRSSSRL
Sbjct: 1 MASPQSTKTGLNLPAGMNQTSLRLETFSSSFRGIS--SLSSPSKSTCSDRFIPCRSSSRL 58
Query: 61 HTFELIEK--GSPVKEGGNEAYNRLLKSELFGADFGS-FSSPAGQ----GSPMSPSKNML 113
H F+L +K +PVKEGGNEAY+RLLKSELFG+DF S SPAG+ SPMSP NML
Sbjct: 59 HAFDLQDKEPTTPVKEGGNEAYSRLLKSELFGSDFASPCLSPAGRQGSASSPMSPCTNML 118
Query: 114 RFKTDHSSGPNSPYSPS-ILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLN 172
RFKTD S+ S ILG+DNG SS++S PPK PRKVPKTPHKVLDAPSLQDDFYLN
Sbjct: 119 RFKTDRSNSSPSSPFSPSILGNDNGLSSDSSPPPKPPRKVPKTPHKVLDAPSLQDDFYLN 178
Query: 173 LVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQ 232
+VDWSSQNVLAVGLGTCVYLWTASNSKV++LCDLGP DSVCSVQWTREGSYIS+GT+ GQ
Sbjct: 179 VVDWSSQNVLAVGLGTCVYLWTASNSKVSKLCDLGPNDSVCSVQWTREGSYISIGTSHGQ 238
Query: 233 VQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK 292
VQVWDG QCKRVRT GGHQTR GVLAWNSRILSSGSRDRNILQHD+RV SDY+ KL GHK
Sbjct: 239 VQVWDGIQCKRVRTMGGHQTRTGVLAWNSRILSSGSRDRNILQHDIRVQSDYVSKLVGHK 298
Query: 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352
SEVCGLKWSHDDRELASGGNDNQLLVWN HSQQP L+LTEHTAAVKAI WSPHQSSLLAS
Sbjct: 299 SEVCGLKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLLAS 358
Query: 353 GGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412
GGGTADRCIRFWNT+NGHQLNS+DTGSQVCNLAWSKNVNE+VSTHGYSQNQIM+WKYPSM
Sbjct: 359 GGGTADRCIRFWNTTNGHQLNSIDTGSQVCNLAWSKNVNEIVSTHGYSQNQIMLWKYPSM 418
Query: 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGRT 472
+KV+TLTGHS+RVLYLATSPDGQTIVTGAGDETLRFWNVFPS+K VKDT LWSLGRT
Sbjct: 419 SKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRFWNVFPSVKMQTPVKDTGLWSLGRT 478
Query: 473 HIR 475
IR
Sbjct: 479 QIR 481
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|283837095|emb|CBH19892.1| cell cycle switch 52B [Solanum lycopersicum var. cerasiforme] | Back alignment and taxonomy information |
|---|
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/500 (78%), Positives = 427/500 (85%), Gaps = 31/500 (6%)
Query: 3 LPQTRKTGLNLPAGMNETSLRLETFSG---SFRALSNLSSPSSRSS-------------- 45
+ Q RK+G+NLP+ M+ETSLRL+ FS S R + SSP S S
Sbjct: 4 ITQRRKSGINLPSTMSETSLRLDAFSSPPRSKRTTNLASSPMSNRSPRTISNLSSSPSSK 63
Query: 46 --TCSDRFIPCRSSSRLHTFELIEKGSPVKEGG---NEAYNRLLKSELFGADFGSFSSPA 100
+CSDRFIPCRSSSRLHTF L+EK SPVKEGG N+AY+RLLKSELFGADF FSSPA
Sbjct: 64 SASCSDRFIPCRSSSRLHTFGLVEKASPVKEGGGGNNDAYSRLLKSELFGADFSCFSSPA 123
Query: 101 G----QGSPMSPSKNMLRFKTDHSSGPNSPYSPSILGH-DNGFSSEASTPPKLPRKVPKT 155
G SPMSPSKNMLRFKT++S GPNSP S+LGH D S+E STPPK PRKVPKT
Sbjct: 124 GTKGCANSPMSPSKNMLRFKTENS-GPNSP---SVLGHTDTSLSNEVSTPPKPPRKVPKT 179
Query: 156 PHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSV 215
PHKVLDAPSLQDDFYLNLVDWSSQN+LAVGLGTCVYLWTASNS+VT+LCDLGP DSVCSV
Sbjct: 180 PHKVLDAPSLQDDFYLNLVDWSSQNILAVGLGTCVYLWTASNSRVTKLCDLGPTDSVCSV 239
Query: 216 QWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQ 275
QWTREGSYIS+GT+LGQVQVWDGTQCK+VRTFGGHQTR GVLAW+SRILSSGSRDRNILQ
Sbjct: 240 QWTREGSYISIGTSLGQVQVWDGTQCKKVRTFGGHQTRTGVLAWSSRILSSGSRDRNILQ 299
Query: 276 HDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTA 335
HD+RV SD++ K GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ SQQ L+LTEHTA
Sbjct: 300 HDVRVPSDFVSKFIGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQRSQQSVLKLTEHTA 359
Query: 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVS 395
AVKAI WSPHQ LLASGGGTADRCIRFWNT NG+QLN +DTGSQVCNLAWSKNVNE+VS
Sbjct: 360 AVKAITWSPHQCGLLASGGGTADRCIRFWNTINGNQLNHIDTGSQVCNLAWSKNVNEIVS 419
Query: 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455
THGYSQNQIMVWKYPSM+KV+TLTGHSLRVLYLA SPDGQTIVTGAGDETLRFWNVFPS+
Sbjct: 420 THGYSQNQIMVWKYPSMSKVATLTGHSLRVLYLAMSPDGQTIVTGAGDETLRFWNVFPSV 479
Query: 456 KAPALVKDTSLWSLGRTHIR 475
K PA VKDT +WSLGRTHIR
Sbjct: 480 KIPAAVKDTGVWSLGRTHIR 499
|
Source: Solanum lycopersicum var. cerasiforme Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| TAIR|locus:2159078 | 481 | FZR3 "AT5G13840" [Arabidopsis | 0.995 | 0.983 | 0.815 | 1.1e-213 | |
| TAIR|locus:2127263 | 483 | FZR2 "AT4G22910" [Arabidopsis | 0.882 | 0.867 | 0.637 | 8.4e-145 | |
| TAIR|locus:2137030 | 475 | CCS52A2 "AT4G11920" [Arabidops | 0.955 | 0.955 | 0.595 | 5.3e-143 | |
| UNIPROTKB|Q9UM11 | 496 | FZR1 "Fizzy-related protein ho | 0.797 | 0.764 | 0.598 | 1.1e-122 | |
| UNIPROTKB|Q32L05 | 493 | FZR1 "Uncharacterized protein" | 0.797 | 0.768 | 0.598 | 1.7e-122 | |
| UNIPROTKB|E2R4Z3 | 496 | FZR1 "Uncharacterized protein" | 0.797 | 0.764 | 0.598 | 1.7e-122 | |
| UNIPROTKB|Q5H7B9 | 493 | FZR1 "Uncharacterized protein" | 0.797 | 0.768 | 0.598 | 1.7e-122 | |
| FB|FBgn0262699 | 478 | rap "retina aberrant in patter | 0.791 | 0.786 | 0.592 | 5.9e-120 | |
| MGI|MGI:1926790 | 493 | Fzr1 "fizzy/cell division cycl | 0.797 | 0.768 | 0.596 | 3.3e-118 | |
| ZFIN|ZDB-GENE-040426-712 | 495 | fzr1 "fizzy/cell division cycl | 0.797 | 0.765 | 0.595 | 2.3e-117 |
| TAIR|locus:2159078 FZR3 "AT5G13840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2065 (732.0 bits), Expect = 1.1e-213, P = 1.1e-213
Identities = 394/483 (81%), Positives = 423/483 (87%)
Query: 1 MDLPQTRKTGLNLPAGMNETSLRLETFSGXXXXXXXXXXXXXXXXXXXDRFIPCRSSSRL 60
M PQ+ KTGLNLPAGMN+TSLRLETFS DRFIPCRSSSRL
Sbjct: 1 MASPQSTKTGLNLPAGMNQTSLRLETFSSSFRGISSLSSPSKSTCS--DRFIPCRSSSRL 58
Query: 61 HTFELIEKG--SPVKEGGNEAYNRLLKSELFGADFGS-FSSPAG-QGS---PMSPSKNML 113
H F+L +K +PVKEGGNEAY+RLLKSELFG+DF S SPAG QGS PMSP NML
Sbjct: 59 HAFDLQDKEPTTPVKEGGNEAYSRLLKSELFGSDFASPLLSPAGGQGSASSPMSPCTNML 118
Query: 114 RFKTDHS-SGPNSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLN 172
RFKTD S S P+SP+SPSILG+DNG SS++S PPK PRKVPKTPHKVLDAPSLQDDFYLN
Sbjct: 119 RFKTDRSNSSPSSPFSPSILGNDNGHSSDSSPPPKPPRKVPKTPHKVLDAPSLQDDFYLN 178
Query: 173 LVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQ 232
+VDWSSQNVLAVGLGTCVYLWTASNSKVT+LCDLGP DSVCSVQWTREGSYIS+GT+ GQ
Sbjct: 179 VVDWSSQNVLAVGLGTCVYLWTASNSKVTKLCDLGPNDSVCSVQWTREGSYISIGTSHGQ 238
Query: 233 VQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK 292
VQVWDGTQCKRVRT GGHQTR GVLAWNSRILSSGSRDRNILQHD+RV SD++ KL GHK
Sbjct: 239 VQVWDGTQCKRVRTMGGHQTRTGVLAWNSRILSSGSRDRNILQHDIRVQSDFVSKLVGHK 298
Query: 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352
SEVCGLKWSHDDRELASGGNDNQLLVWN HSQQP L+LTEHTAAVKAI WSPHQSSLLAS
Sbjct: 299 SEVCGLKWSHDDRELASGGNDNQLLVWNNHSQQPILKLTEHTAAVKAITWSPHQSSLLAS 358
Query: 353 GGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412
GGGTADRCIRFWNT+NG+QLNS+DTGSQVCNLAWSKNVNE+VSTHGYSQNQIM+WKYPSM
Sbjct: 359 GGGTADRCIRFWNTTNGNQLNSIDTGSQVCNLAWSKNVNEIVSTHGYSQNQIMLWKYPSM 418
Query: 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGRT 472
+KV+TLTGHS+RVLYLATSPDGQTIVTGAGDETLRFWNVFPS+K VKDT LWSLGRT
Sbjct: 419 SKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRFWNVFPSVKMQTPVKDTGLWSLGRT 478
Query: 473 HIR 475
IR
Sbjct: 479 QIR 481
|
|
| TAIR|locus:2127263 FZR2 "AT4G22910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1415 (503.2 bits), Expect = 8.4e-145, P = 8.4e-145
Identities = 274/430 (63%), Positives = 326/430 (75%)
Query: 49 DRFIPCRSSSRLHTFELIEKGSPVKEG---GNEAYNRLLKSELFGADFGSFSSPAGQGSP 105
DRFIP RS S F+L SP K+G G +Y LL++ +FG + G
Sbjct: 62 DRFIPSRSGSNFALFDL--SPSPSKDGKEDGAGSYATLLRAAMFGPETPEKRDITG---- 115
Query: 106 MSPSKNMLRFKTDHSSGPNSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSL 165
S S+N+ RFKT+ NS +SP + D+ S S P K PRKVP++P+KVLDAP+L
Sbjct: 116 FSSSRNIFRFKTETHRSLNS-FSPFGVDDDSPGVSH-SGPVKAPRKVPRSPYKVLDAPAL 173
Query: 166 QDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS 225
QDDFYLNLVDWS+QNVLAVGLG CVYLW A +SKVT+LCDLG DSVCSV W G++++
Sbjct: 174 QDDFYLNLVDWSAQNVLAVGLGNCVYLWNACSSKVTKLCDLGAEDSVCSVGWALRGTHLA 233
Query: 226 VGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYI 285
VGT+ G+VQ+WD ++CKR RT GH+ R G LAW S +LSSGSRD++ILQ D+R D++
Sbjct: 234 VGTSTGKVQIWDASRCKRTRTMEGHRLRVGALAWGSSVLSSGSRDKSILQRDIRCQEDHV 293
Query: 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH 345
KLAGHKSEVCGLKWS+D+RELASGGNDN+L VWNQHS QP L+ +EHTAAVKAIAWSPH
Sbjct: 294 SKLAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYSEHTAAVKAIAWSPH 353
Query: 346 QSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405
LLASGGGTADRCIRFWNT+ L+S+DT SQVCNLAWSKNVNELVSTHGYSQNQI+
Sbjct: 354 VHGLLASGGGTADRCIRFWNTTTNTHLSSIDTCSQVCNLAWSKNVNELVSTHGYSQNQII 413
Query: 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTS 465
VWKYP+M+K++TLTGH+ RVLYLA SPDGQTIVTGAGDETLRFWNVFPS K+ +
Sbjct: 414 VWKYPTMSKIATLTGHTYRVLYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIG 473
Query: 466 LWSLGRTHIR 475
GRT IR
Sbjct: 474 SSFFGRTTIR 483
|
|
| TAIR|locus:2137030 CCS52A2 "AT4G11920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1398 (497.2 bits), Expect = 5.3e-143, P = 5.3e-143
Identities = 280/470 (59%), Positives = 329/470 (70%)
Query: 11 LNLPAGMNETSLRLETFSGXXXXXXXXXXXXXXXXXXXDRFIPCRSSSRLHTFELIEKGS 70
LNLP MN ++ LE S DRFIP RS S F+L S
Sbjct: 17 LNLPPSMNRPTVSLE--SRINRLIDSNHYHSPSKPIYSDRFIPSRSGSNFALFDLASS-S 73
Query: 71 PVKEGGNE----AYNRLLKSELFGADFGSFSSPAGQGSPMSPSKNMLRFKTDHSSGPNSP 126
P K+ G E +Y LLK+ LFG S G SPS N+ RFKT+ N
Sbjct: 74 PNKKDGKEDGAGSYASLLKTALFGPVTPE-KSDVVNG--FSPSGNIFRFKTETQRSLNL- 129
Query: 127 YSPSILGHDNGFSSEAS-TPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVG 185
Y P D+ S S +P K PRK+ ++P+KVLDAP+LQDDFYLNLVDWS+QNVLAVG
Sbjct: 130 YPP----FDSDVVSGVSPSPVKSPRKILRSPYKVLDAPALQDDFYLNLVDWSAQNVLAVG 185
Query: 186 LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245
LG CVYLW A +SKVT+LCDLG ++VCSV W G+++++GT+ G VQ+WD +CK +R
Sbjct: 186 LGNCVYLWNACSSKVTKLCDLGVDETVCSVGWALRGTHLAIGTSSGTVQIWDVLRCKNIR 245
Query: 246 TFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305
T GH+ R G LAW+S +LSSGSRD++ILQ D+R D++ KL GHKSE+CGLKWS D+R
Sbjct: 246 TMEGHRLRVGALAWSSSVLSSGSRDKSILQRDIRTQEDHVSKLKGHKSEICGLKWSSDNR 305
Query: 306 ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365
ELASGGNDN+L VWNQHS QP LR EH AAVKAIAWSPH LLASGGGTADRCIRFWN
Sbjct: 306 ELASGGNDNKLFVWNQHSTQPVLRFCEHAAAVKAIAWSPHHFGLLASGGGTADRCIRFWN 365
Query: 366 TSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV 425
T+ LN VDT SQVCNL WSKNVNELVSTHGYSQNQI+VWKYP+M+K++TLTGHS RV
Sbjct: 366 TTTNTHLNCVDTNSQVCNLVWSKNVNELVSTHGYSQNQIIVWKYPTMSKLATLTGHSYRV 425
Query: 426 LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGRTHIR 475
LYLA SPDGQTIVTGAGDETLRFWNVFPS K+ + + S GRT IR
Sbjct: 426 LYLAVSPDGQTIVTGAGDETLRFWNVFPSPKSQSRESEIGALSFGRTTIR 475
|
|
| UNIPROTKB|Q9UM11 FZR1 "Fizzy-related protein homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1165 (415.2 bits), Expect = 1.1e-122, Sum P(2) = 1.1e-122
Identities = 233/389 (59%), Positives = 272/389 (69%)
Query: 79 AYNRLLKSELFGADFGSFSSPAGQGSPMSPS----KNMLRFK--TDHSSGPN-SPYSPSI 131
AY+ LLK+EL GA P + + PS K + + T SS + + SP
Sbjct: 90 AYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRSSPDDGNDVSPYS 149
Query: 132 LGHDNGFSSEASTPPKLP-RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCV 190
L + S + P+ P RK+ K P KVLDAP LQDDFYLNLVDWSS NVL+VGLGTCV
Sbjct: 150 LSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCV 209
Query: 191 YLWTASNSKVTRLCDLG-PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
YLW+A S+VTRLCDL GDSV SV W+ G+ ++VGT+ G VQ+WD K++ G
Sbjct: 210 YLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEG 269
Query: 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELA 308
H R G LAWN+ LSSGSRDR ILQ D+R +L GH+ EVCGLKWS D + LA
Sbjct: 270 HTARVGALAWNAEQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLA 329
Query: 309 SGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368
SGGNDN+LLVWN S P + TEH AAVKAIAWSPHQ LLASGGGTADRCIRFWNT
Sbjct: 330 SGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLT 389
Query: 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428
G L +DTGSQVCNLAWSK+ NELVSTHGYSQNQI+VWKYPS+ +V+ LTGHS RVLYL
Sbjct: 390 GQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYL 449
Query: 429 ATSPDGQTIVTGAGDETLRFWNVFPSLKA 457
A SPDG+ IVTGAGDETLRFWNVF ++
Sbjct: 450 AMSPDGEAIVTGAGDETLRFWNVFSKTRS 478
|
|
| UNIPROTKB|Q32L05 FZR1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1163 (414.5 bits), Expect = 1.7e-122, Sum P(2) = 1.7e-122
Identities = 233/389 (59%), Positives = 272/389 (69%)
Query: 79 AYNRLLKSELFGADFGSFSSPAGQGSPMSPS----KNMLRFK--TDHSSGPN-SPYSPSI 131
AY+ LLK+EL GA P + + PS K + + T SS + + SP
Sbjct: 90 AYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPERKGLFTYSLSTKRSSPDDGNDVSPYS 149
Query: 132 LGHDNGFSSEASTPPKLP-RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCV 190
L + S + P+ P RK+ K P KVLDAP LQDDFYLNLVDWSS NVL+VGLGTCV
Sbjct: 150 LSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCV 209
Query: 191 YLWTASNSKVTRLCDLG-PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
YLW+A S+VTRLCDL GDSV SV W+ G+ ++VGT+ G VQ+WD K++ G
Sbjct: 210 YLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEG 269
Query: 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELA 308
H R G LAWN+ LSSGSRDR ILQ D+R +L GH+ EVCGLKWS D + LA
Sbjct: 270 HTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLA 329
Query: 309 SGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368
SGGNDN+LLVWN S P + TEH AAVKAIAWSPHQ LLASGGGTADRCIRFWNT
Sbjct: 330 SGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLT 389
Query: 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428
G L +DTGSQVCNLAWSK+ NELVSTHGYSQNQI+VWKYPS+ +V+ LTGHS RVLYL
Sbjct: 390 GQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYL 449
Query: 429 ATSPDGQTIVTGAGDETLRFWNVFPSLKA 457
A SPDG+ IVTGAGDETLRFWNVF ++
Sbjct: 450 AMSPDGEAIVTGAGDETLRFWNVFSKTRS 478
|
|
| UNIPROTKB|E2R4Z3 FZR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1163 (414.5 bits), Expect = 1.7e-122, Sum P(2) = 1.7e-122
Identities = 233/389 (59%), Positives = 272/389 (69%)
Query: 79 AYNRLLKSELFGADFGSFSSPAGQGSPMSPS----KNMLRFK--TDHSSGPN-SPYSPSI 131
AY+ LLK+EL GA P + + PS K + + T SS + + SP
Sbjct: 90 AYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEKKGLFTYSLSTKRSSPDDGNDVSPYS 149
Query: 132 LGHDNGFSSEASTPPKLP-RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCV 190
L + S + P+ P RK+ K P KVLDAP LQDDFYLNLVDWSS NVL+VGLGTCV
Sbjct: 150 LSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCV 209
Query: 191 YLWTASNSKVTRLCDLG-PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
YLW+A S+VTRLCDL GDSV SV W+ G+ ++VGT+ G VQ+WD K++ G
Sbjct: 210 YLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEG 269
Query: 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELA 308
H R G LAWN+ LSSGSRDR ILQ D+R +L GH+ EVCGLKWS D + LA
Sbjct: 270 HTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLA 329
Query: 309 SGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368
SGGNDN+LLVWN S P + TEH AAVKAIAWSPHQ LLASGGGTADRCIRFWNT
Sbjct: 330 SGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLT 389
Query: 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428
G L +DTGSQVCNLAWSK+ NELVSTHGYSQNQI+VWKYPS+ +V+ LTGHS RVLYL
Sbjct: 390 GQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYL 449
Query: 429 ATSPDGQTIVTGAGDETLRFWNVFPSLKA 457
A SPDG+ IVTGAGDETLRFWNVF ++
Sbjct: 450 AMSPDGEAIVTGAGDETLRFWNVFSKTRS 478
|
|
| UNIPROTKB|Q5H7B9 FZR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1163 (414.5 bits), Expect = 1.7e-122, Sum P(2) = 1.7e-122
Identities = 233/389 (59%), Positives = 272/389 (69%)
Query: 79 AYNRLLKSELFGADFGSFSSPAGQGSPMSPS----KNMLRFK--TDHSSGPN-SPYSPSI 131
AY+ LLK+EL GA P + + PS K + + T SS + + SP
Sbjct: 90 AYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPERKGLFTYSLSTKRSSPDDGNDVSPYS 149
Query: 132 LGHDNGFSSEASTPPKLP-RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCV 190
L + S + P+ P RK+ K P KVLDAP LQDDFYLNLVDWSS NVL+VGLGTCV
Sbjct: 150 LSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCV 209
Query: 191 YLWTASNSKVTRLCDLG-PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
YLW+A S+VTRLCDL GDSV SV W+ G+ ++VGT+ G VQ+WD K++ G
Sbjct: 210 YLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEG 269
Query: 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELA 308
H R G LAWN+ LSSGSRDR ILQ D+R +L GH+ EVCGLKWS D + LA
Sbjct: 270 HTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLA 329
Query: 309 SGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368
SGGNDN+LLVWN S P + TEH AAVKAIAWSPHQ LLASGGGTADRCIRFWNT
Sbjct: 330 SGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLT 389
Query: 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428
G L +DTGSQVCNLAWSK+ NELVSTHGYSQNQI+VWKYPS+ +V+ LTGHS RVLYL
Sbjct: 390 GQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYL 449
Query: 429 ATSPDGQTIVTGAGDETLRFWNVFPSLKA 457
A SPDG+ IVTGAGDETLRFWNVF ++
Sbjct: 450 AMSPDGEAIVTGAGDETLRFWNVFSKTRS 478
|
|
| FB|FBgn0262699 rap "retina aberrant in pattern" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1146 (408.5 bits), Expect = 5.9e-120, Sum P(2) = 5.9e-120
Identities = 230/388 (59%), Positives = 270/388 (69%)
Query: 79 AYNRLLKSELFGADFGSFSSPAGQG---SPMSPSKNMLRFK----TDHSSGPNSPYSPSI 131
AY+ LLK+EL G+ + AG+ + +P+ FK T PYS S
Sbjct: 79 AYSCLLKNELLGSAIDDVKT-AGEERNENAYTPAAKRSLFKYQSPTKQDYNGECPYSLSP 137
Query: 132 LGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVY 191
+ + +P K RK+ + P KVLDAP LQDDFYLNLVDWSSQNVLAVGLG+CVY
Sbjct: 138 VSAKS--QKLLRSPRKATRKISRIPFKVLDAPELQDDFYLNLVDWSSQNVLAVGLGSCVY 195
Query: 192 LWTASNSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH 250
LW+A S+VTRLCDL P ++V SV W G+ ++VGT+ G V VWD K++ GH
Sbjct: 196 LWSACTSQVTRLCDLSPDANTVTSVSWNERGNTVAVGTHHGYVTVWDVAANKQINKLNGH 255
Query: 251 QTRAGVLAWNSRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELAS 309
R G LAWNS ILSSGSRDR I+Q D R +LAGH+ EVCGLKWS D++ LAS
Sbjct: 256 SARVGALAWNSDILSSGSRDRWIIQRDTRTPQLQSERRLAGHRQEVCGLKWSPDNQYLAS 315
Query: 310 GGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369
GGNDN+L VWNQHS P TEH AAVKAIAWSPH LLASGGGTADRCIRFWNT G
Sbjct: 316 GGNDNRLYVWNQHSVNPVQSYTEHMAAVKAIAWSPHHHGLLASGGGTADRCIRFWNTLTG 375
Query: 370 HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLA 429
+ VDTGSQVCNLAWSK+ +ELVSTHGYSQNQI+VWKYPS+ +V+ LTGHS RVLYLA
Sbjct: 376 QPMQCVDTGSQVCNLAWSKHSSELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLA 435
Query: 430 TSPDGQTIVTGAGDETLRFWNVFPSLKA 457
SPDG+ IVTGAGDETLRFWNVF ++
Sbjct: 436 LSPDGEAIVTGAGDETLRFWNVFSKARS 463
|
|
| MGI|MGI:1926790 Fzr1 "fizzy/cell division cycle 20 related 1 (Drosophila)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 232/389 (59%), Positives = 272/389 (69%)
Query: 79 AYNRLLKSELFGADFGSFSSPAGQGSPMSPS----KNMLRFK-TDHSSGPN--SPYSPSI 131
AY+ LLK+EL GA P + + PS K + + + S P+ + SP
Sbjct: 90 AYSALLKNELLGAGIEKVQDPQTEDRRLQPSTPEHKGLFTYSLSSKRSSPDDGNDVSPYS 149
Query: 132 LGHDNGFSSEASTPPKLP-RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCV 190
L + S + P+ P RK+ K P KVLDAP LQDDFYLNLVDWSS NVL+VGLGTCV
Sbjct: 150 LSPVSNKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCV 209
Query: 191 YLWTASNSKVTRLCDLG-PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249
YLW+A S+VTRLCDL GDSV SV W+ G+ ++VGT+ G VQ+WD K++ G
Sbjct: 210 YLWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEG 269
Query: 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELA 308
H R G LAWN+ LSSGSRDR ILQ D+R +L GH+ EVCGLKWS D + LA
Sbjct: 270 HTARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLA 329
Query: 309 SGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368
SGGNDN+LLVWN S P + TEH AAVKAIAWSPHQ LLASGGGTADRCIRFWNT
Sbjct: 330 SGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLT 389
Query: 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428
G L +DTGSQVCNLAWSK+ NELVSTHGYSQNQI+VWKYPS+ +V+ LTGHS RVLYL
Sbjct: 390 GQPLQCIDTGSQVCNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYL 449
Query: 429 ATSPDGQTIVTGAGDETLRFWNVFPSLKA 457
A SPDG+ IVTGAGDETLRFWNVF ++
Sbjct: 450 AMSPDGEAIVTGAGDETLRFWNVFSKTRS 478
|
|
| ZFIN|ZDB-GENE-040426-712 fzr1 "fizzy/cell division cycle 20 related 1 (Drosophila)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1156 (412.0 bits), Expect = 2.3e-117, P = 2.3e-117
Identities = 231/388 (59%), Positives = 270/388 (69%)
Query: 79 AYNRLLKSELFGADFGSFSSPAGQG---SPMSPSKNML---RFKTDHSSGPNSPYSPSIL 132
AY+ LLK+EL GA P + P +P + L S+ ++ SP L
Sbjct: 93 AYSALLKNELLGAGIEKVLDPQTEDRRLQPSTPERRSLFSYSLSAKRSTPDDNSVSPYSL 152
Query: 133 GHDNGFSSEASTPPKLP-RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVY 191
+ S + P+ P RK+ K P KVLDAP LQDDFYLNLVDWSS NVL+VGLGTCVY
Sbjct: 153 SPVSSKSQKLLRSPRKPTRKISKIPFKVLDAPELQDDFYLNLVDWSSLNVLSVGLGTCVY 212
Query: 192 LWTASNSKVTRLCDLG-PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH 250
LW+A S+VTRLCDL GDSV SV W+ G+ ++VGT+ G VQ+WD T K++ GH
Sbjct: 213 LWSACTSQVTRLCDLSVEGDSVTSVGWSERGNLVAVGTHKGFVQIWDATAGKKLFALEGH 272
Query: 251 QTRAGVLAWNSRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELAS 309
R G LAWN+ LSSGSRDR ILQ D+R +L GH+ EVCGLKWS D + LAS
Sbjct: 273 TARVGALAWNADQLSSGSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLAS 332
Query: 310 GGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369
GGNDN+LLVWN S P + TEH AAVKAIAWSPHQ LLASGGGTADRCIRFWNT
Sbjct: 333 GGNDNKLLVWNHSSVLPMQQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTA 392
Query: 370 HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLA 429
L +DTGSQVCNLAWSK+ NELVSTHGYSQNQI+VWKYPS+ +V+ LTGHS RVLYLA
Sbjct: 393 QPLQCIDTGSQVCNLAWSKHTNELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLA 452
Query: 430 TSPDGQTIVTGAGDETLRFWNVFPSLKA 457
SPDG+ IVTGAGDETLRFWNVF ++
Sbjct: 453 MSPDGEAIVTGAGDETLRFWNVFSKTRS 480
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q62623 | CDC20_RAT | No assigned EC number | 0.4168 | 0.8736 | 0.8316 | yes | no |
| Q8LPL5 | FZR3_ARATH | No assigned EC number | 0.8240 | 0.9957 | 0.9833 | yes | no |
| Q9R1K5 | FZR_MOUSE | No assigned EC number | 0.5612 | 0.8778 | 0.8458 | yes | no |
| Q9UM11 | FZR_HUMAN | No assigned EC number | 0.5694 | 0.8421 | 0.8064 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
 |
 |
 |
 |
 |
 |
 |
 |
||
 | GSVIVG00018459001 | SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (471 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00014488001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (380 aa) | • | 0.465 | |||||||
 | GSVIVG00034353001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (427 aa) | • | 0.448 | |||||||
 | GSVIVG00034167001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (405 aa) | • | 0.445 | |||||||
 | GSVIVG00017915001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (459 aa) | • | 0.442 | |||||||
 | GSVIVG00027833001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (545 aa) | • | • | • | 0.433 | |||||
 | GSVIVG00028641001 | SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (398 aa) | • | 0.432 | |||||||
 | GSVIVG00001457001 | SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (337 aa) | • | 0.432 | |||||||
 | GSVIVG00016677001 | SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (761 aa) | • | • | • | 0.427 | |||||
 | GSVIVG00023185001 | SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (344 aa) | • | 0.424 | |||||||
 | GSVIVG00023743001 | SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (298 aa) | • | 0.412 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 475 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-38 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-33 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-31 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-29 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-14 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-12 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 2e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 1e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 4e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 3e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 3e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-38
Identities = 85/285 (29%), Positives = 137/285 (48%), Gaps = 18/285 (6%)
Query: 174 VDWSSQ-NVLAVGLG-TCVYLW-TASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL 230
V +S +LA G G + +W + + L G V V + +G+Y++ G++
Sbjct: 15 VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK--GHTGPVRDVAASADGTYLASGSSD 72
Query: 231 GQVQVWDGTQCKRVRTFGGHQ--TRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICK- 287
+++WD + VRT GH + + + RILSS SRD+ I D+ C
Sbjct: 73 KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE---TGKCLT 129
Query: 288 -LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346
L GH V + +S D +AS D + +W+ + + LT HT V ++A+SP
Sbjct: 130 TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG 189
Query: 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIM 405
LL+S D I+ W+ S G L ++ + V ++A+S + L S G I
Sbjct: 190 EKLLSSSS---DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS--GSEDGTIR 244
Query: 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
VW + V TL+GH+ V LA SPDG+ + +G+ D T+R W+
Sbjct: 245 VWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-33
Identities = 70/256 (27%), Positives = 117/256 (45%), Gaps = 25/256 (9%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ---TRAGVLAWNSRI 263
G V V ++ +G ++ G+ G ++VWD + +RT GH A + +
Sbjct: 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL 66
Query: 264 LSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323
S S D+ I DL + + + L GH S V + +S D R L+S D + VW+ +
Sbjct: 67 ASGSS-DKTIRLWDLE-TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124
Query: 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN--------GHQLNSV 375
+ L HT V ++A+SP + +AS D I+ W+ GH
Sbjct: 125 GKCLTTLRGHTDWVNSVAFSP-DGTFVASSS--QDGTIKLWDLRTGKCVATLTGHT---- 177
Query: 376 DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435
+V ++A+S + +L+S S I +W + + TL GH V +A SPDG
Sbjct: 178 ---GEVNSVAFSPDGEKLLS--SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGY 232
Query: 436 TIVTGAGDETLRFWNV 451
+ +G+ D T+R W++
Sbjct: 233 LLASGSEDGTIRVWDL 248
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 125 bits (314), Expect = 2e-31
Identities = 82/295 (27%), Positives = 143/295 (48%), Gaps = 13/295 (4%)
Query: 170 YLNLVDWSSQN---VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV 226
+ + +S L + LW K G D V S+ ++ +G +
Sbjct: 157 SVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST-LAGHTDPVSSLAFSPDGGLLIA 215
Query: 227 GTNL-GQVQVWDGTQCKRVR-TFGGHQTRA-GVLAWNSRILSSGSRDRNILQHDLRVSSD 283
+ G +++WD + K +R T GH + + +L+SGS D I DLR SS
Sbjct: 216 SGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275
Query: 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN--QHSQQPTLRLTEHTAAVKAIA 341
+ L+GH S V + +S D + LASG +D + +W+ +L L H V +++
Sbjct: 276 LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS 335
Query: 342 WSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ 401
+SP S L++ GG+ D IR W+ G L +++ S V ++++S + V + G +
Sbjct: 336 FSPDGSLLVS--GGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPD--GRVVSSGSTD 391
Query: 402 NQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456
+ +W + + + L GH+ RV L SPDG+++ +G+ D T+R W++ SLK
Sbjct: 392 GTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLK 446
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 6e-29
Identities = 60/211 (28%), Positives = 108/211 (51%), Gaps = 9/211 (4%)
Query: 244 VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS 301
RT GH +A++ ++L++GS D I DL + + + L GH V + S
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLE-TGELLRTLKGHTGPVRDVAAS 60
Query: 302 HDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCI 361
D LASG +D + +W+ + + LT HT+ V ++A+SP +L+S D+ I
Sbjct: 61 ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSS--RDKTI 117
Query: 362 RFWNTSNGHQLNSVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG 420
+ W+ G L ++ V ++A+S + V++ I +W + V+TLTG
Sbjct: 118 KVWDVETGKCLTTLRGHTDWVNSVAFSPD-GTFVAS-SSQDGTIKLWDLRTGKCVATLTG 175
Query: 421 HSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
H+ V +A SPDG+ +++ + D T++ W++
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.7 bits (182), Expect = 2e-14
Identities = 46/210 (21%), Positives = 84/210 (40%), Gaps = 6/210 (2%)
Query: 247 FGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306
G + L S + + + L GH+ + + +S D
Sbjct: 20 ELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGEL 79
Query: 307 LASGGNDNQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364
L SG +D + +W+ + + ++ H ++V +A S + + + D ++ W
Sbjct: 80 LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139
Query: 365 NTSNGHQLNSVDTGSQ--VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422
+ S +L G V +LA+S + L S I +W + +STL GH+
Sbjct: 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD-GTIKLWDLRTGKPLSTLAGHT 198
Query: 423 LRVLYLATSPDGQTIVTGAG-DETLRFWNV 451
V LA SPDG ++ D T+R W++
Sbjct: 199 DPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.3 bits (168), Expect = 1e-12
Identities = 51/216 (23%), Positives = 91/216 (42%), Gaps = 10/216 (4%)
Query: 171 LNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL 230
++ + + + LW +S G SV SV ++ +G ++ G++
Sbjct: 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSD 305
Query: 231 GQVQVWD--GTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYI 285
G V++WD + T GH+ L+++ S ++S GS D I DLR
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365
Query: 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH 345
S V + +S D R ++SG D + +W+ + L HT+ V ++ +SP
Sbjct: 366 TL--EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPD 423
Query: 346 QSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQV 381
SL + G++D IR W+ + S +V
Sbjct: 424 GKSLAS---GSSDNTIRLWDLKTSLKSVSFSPDGKV 456
|
Length = 466 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (127), Expect = 2e-07
Identities = 47/195 (24%), Positives = 100/195 (51%), Gaps = 13/195 (6%)
Query: 285 ICKLAGHKSEVCGLKW-SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWS 343
+ +LA +S++ G+ W S+ ++AS + + VW+ Q + EH V +I +S
Sbjct: 526 VVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYS 584
Query: 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQ 403
+LLAS G+ D ++ W+ + G + ++ T + +C + + ++ G + ++
Sbjct: 585 SADPTLLAS--GSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLA-FGSADHK 641
Query: 404 IMVW--KYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461
+ + + P + + T+ GHS V Y+ D T+V+ + D TL+ W++ S+ +
Sbjct: 642 VYYYDLRNPKLP-LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG---I 696
Query: 462 KDTSLWS-LGRTHIR 475
+T L S +G T+++
Sbjct: 697 NETPLHSFMGHTNVK 711
|
Length = 793 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-05
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 281 SSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320
S + + L GH V + +S D + LASG +D + +W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 3e-05
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320
+ L GH V + +S D LASG +D + VW+
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 4e-05
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 411 SMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
S + TL GH+ V +A SPDG+ + +G+ D T++ W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 5e-05
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 414 KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+ TL GH+ V +A SPDG + +G+ D T+R W+
Sbjct: 3 LLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 3e-04
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365
S + L HT V ++A+SP LASG D I+ W+
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD-GKYLASGS--DDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 3e-04
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365
+ L HT V ++A+SP +LLASG D +R W+
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPD-GNLLASGS--DDGTVRVWD 39
|
Length = 39 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.98 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.98 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.98 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.95 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.95 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.94 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.94 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.94 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.92 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.91 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.9 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.9 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.9 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.9 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.9 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.88 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.88 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.87 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.87 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.86 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.85 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.85 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.85 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.85 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.84 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.84 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.83 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.83 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.83 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.83 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.83 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.83 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.81 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.8 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.8 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.8 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.8 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.8 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.78 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.77 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.76 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.76 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.76 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.75 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.74 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.72 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.72 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.71 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.71 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.69 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.68 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.67 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.67 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.67 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.66 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.66 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.65 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.64 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.63 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.63 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.62 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.62 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.61 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.61 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.61 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.59 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.58 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.58 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.58 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.57 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.57 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.57 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.56 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.56 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.55 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.55 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.54 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.53 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.53 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.52 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.51 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.51 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.5 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.49 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.48 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.48 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.46 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.45 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.44 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.44 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.43 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.43 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.4 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.39 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.39 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.38 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.37 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.35 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.34 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.34 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.34 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.34 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.33 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.31 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.3 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.28 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.25 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.25 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.25 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.24 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.23 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.23 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.2 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.17 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.17 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.14 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.14 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.09 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.08 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.07 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 99.06 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.06 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.03 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.02 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.0 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.98 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.96 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.96 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.96 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.95 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.95 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.93 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.93 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.93 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.9 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.87 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.87 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.82 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.81 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.8 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.78 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.77 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.76 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.74 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.72 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.72 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.72 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.71 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.69 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.68 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.68 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.65 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.61 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.6 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.57 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.56 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.53 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.49 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.49 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.48 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.48 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.44 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.44 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.43 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.39 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.38 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.37 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.37 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.37 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.35 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.34 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.3 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.29 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.28 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.27 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.22 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.2 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.18 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.18 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 98.17 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.1 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.1 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.09 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.09 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.07 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.04 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.04 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.04 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 98.01 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.98 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.94 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.92 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.91 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.9 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.89 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.8 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.76 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.74 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.73 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.71 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.69 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.64 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.58 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.56 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.53 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.5 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.46 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.43 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.43 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.38 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.37 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.37 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.35 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 97.28 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.27 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.27 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 97.24 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.19 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.14 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 97.12 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 97.11 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.1 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.07 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 97.04 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.96 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.96 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.92 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.89 | |
| PRK10115 | 686 | protease 2; Provisional | 96.79 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.72 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.72 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.67 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.65 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.62 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.58 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.55 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 96.52 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.48 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.45 | |
| PRK10115 | 686 | protease 2; Provisional | 96.45 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.4 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.28 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 96.24 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.08 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 96.03 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.0 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 95.95 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.92 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.87 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.81 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.8 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.7 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 95.66 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.63 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 95.49 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.38 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.33 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.28 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 95.28 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 95.24 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.23 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.13 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.92 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.89 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.67 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 94.65 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.4 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.07 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 94.0 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.82 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.78 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 93.69 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.67 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 93.64 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 93.61 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 93.6 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 93.55 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.51 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 93.5 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 93.46 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 93.37 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.32 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 93.26 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 93.2 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 92.78 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 92.75 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 92.17 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 92.0 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 91.91 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 91.59 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 91.37 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 91.34 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 90.91 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 90.9 | |
| PLN02153 | 341 | epithiospecifier protein | 90.81 | |
| KOG1896 | 1366 | consensus mRNA cleavage and polyadenylation factor | 90.77 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 90.62 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 90.44 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 90.19 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 89.99 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.97 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.91 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 89.79 | |
| PF10395 | 670 | Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an | 89.76 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 89.57 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.49 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 89.42 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 89.41 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 89.35 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 89.31 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.28 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.28 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 89.27 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 89.19 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 88.84 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 88.81 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 88.67 | |
| PLN02153 | 341 | epithiospecifier protein | 88.27 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 87.7 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 87.61 | |
| PLN02193 | 470 | nitrile-specifier protein | 86.64 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 86.53 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 86.05 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 85.97 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 85.88 | |
| PLN02193 | 470 | nitrile-specifier protein | 85.68 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 85.35 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 85.29 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 85.23 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 85.15 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 85.15 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 84.46 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 84.42 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 84.07 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 83.88 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 83.3 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 82.88 |
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-66 Score=503.60 Aligned_cols=418 Identities=53% Similarity=0.901 Sum_probs=359.0
Q ss_pred CCCCCCCCCCCcccCCCCCc-Ccc-ccccccC----C-C---CCCCCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 011916 39 SPSSRSSTCSDRFIPCRSSS-RLH-TFELIEK----G-S---PVKEGGNEAYNRLLKSELFGADFGSFSSPAGQGSPMSP 108 (475)
Q Consensus 39 ~~~~~~~~~~drfip~r~~~-~~~-~~~~~~~----~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (475)
........++|||||.|... ++. .|..... . . .........+..++++|+|+... .-..+.....++.|
T Consensus 37 ~~~~~~~~~~~rf~P~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~-~~~~~~~~~~~~~~ 115 (484)
T KOG0305|consen 37 SKLSPSSKVGDRFIPSRLSSEEFNRNFKYIGSFSRPNKRSALDTGRESSSLAASLLRSELFKSNK-ITSEQSLRALPDEP 115 (484)
T ss_pred cccCcccccCCccCCcccchhhccccccccccccccccccccccccccchhhhhhhhhhhhccCc-cchhhhhhhccCCc
Confidence 33445778899999999985 553 3332111 1 0 11223455677899999998651 10111122345666
Q ss_pred C-cccccccCCCCCCC---CCCCCCCccCCCCCCcccCCCCCCCCCcCCCCCceeccCCCCCCCCceeEEecCCCCEEEE
Q 011916 109 S-KNMLRFKTDHSSGP---NSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAV 184 (475)
Q Consensus 109 ~-~~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~~~la~ 184 (475)
. .+||.|+..+.... ..++...+..... ......+++..|+++..|+++||+|++.+|||.+.++|+..++||+
T Consensus 116 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~r~~~r~~~~~p~rvLDaP~l~dDfY~nlldWss~n~laV 193 (484)
T KOG0305|consen 116 NRDRILTYKSKAPRPRSRTQEPDSVYPSAESS--IRLLSSPRKLKRKIPQTPYRVLDAPGLQDDFYLNLLDWSSANVLAV 193 (484)
T ss_pred cccceeEecccCCCCccccccccccccccccc--cccccccccccCcccCChhhhccCCcccccHhhhHhhcccCCeEEE
Confidence 5 89999998766421 1222222222211 1233447788899999999999999999999999999999999999
Q ss_pred EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC-CCCceEEEEeCCCE
Q 011916 185 GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG-HQTRAGVLAWNSRI 263 (475)
Q Consensus 185 ~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~ 263 (475)
+.+..||+|+..++++..+++++ .+.|+++.|+++|.+||+|..+|.|.|||..+.+.++.+.+ |..+|.+++|++..
T Consensus 194 alg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~ 272 (484)
T KOG0305|consen 194 ALGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSV 272 (484)
T ss_pred EecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCce
Confidence 99999999999999999999876 89999999999999999999999999999999999999998 99999999999999
Q ss_pred EEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEEC
Q 011916 264 LSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 264 l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~s 343 (475)
+.+|+.|+.|.++|++........+.+|.++||+++|++|+++||+|++|+.+.|||.....++..+..|.++|++++|+
T Consensus 273 lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awc 352 (484)
T KOG0305|consen 273 LSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWC 352 (484)
T ss_pred EEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeC
Confidence 99999999999999997776666789999999999999999999999999999999999889999999999999999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL 423 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~ 423 (475)
|....|||+|||+.|++|++||+.+|+.+..+.++++|++|.|++..++|++++|+.++.|.||++++.+++..+.+|..
T Consensus 353 P~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 353 PWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred CCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 424 RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 424 ~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
+|.+++++|||+.+++|+.|++++||++++.......
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~~~~~~ 469 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFWNLFDERPKSTK 469 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEeccccCCCCcccc
Confidence 9999999999999999999999999999997555543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=328.13 Aligned_cols=297 Identities=23% Similarity=0.415 Sum_probs=262.1
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+.-.|.++.|+|+ .+++++.|.++++||+.+......+. +|...|.||+|+|||+.||+|+.||+|.+||.++++++
T Consensus 114 H~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 114 HGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred CCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcc
Confidence 3445788999996 57777779999999999999888887 99999999999999999999999999999999988765
Q ss_pred -EEecCCCCceEEEEeC-------CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 245 -RTFGGHQTRAGVLAWN-------SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 245 -~~~~~h~~~v~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
+.+.+|...|++++|. .++|++++.||.|+|||+. .+.++..+.+|...|+|+.|--+| +|++|+.|++|
T Consensus 193 g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~-~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtI 270 (480)
T KOG0271|consen 193 GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK-LGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTI 270 (480)
T ss_pred cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc-CceEEEEeccCccceEEEEEcCCc-eEEecCCCceE
Confidence 6789999999999994 2689999999999999998 678899999999999999997665 99999999999
Q ss_pred EEEECCCCceeEEEeccccceeEEEEC-----------CCCCc------------------------EEEEecCCCCCeE
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWS-----------PHQSS------------------------LLASGGGTADRCI 361 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~s-----------p~~~~------------------------ll~sg~Gs~d~~I 361 (475)
++|+...|.....+.+|...|+.|+.+ |.+.. -+++|+ .|.++
T Consensus 271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs--Dd~tl 348 (480)
T KOG0271|consen 271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS--DDFTL 348 (480)
T ss_pred EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec--CCceE
Confidence 999999999999999999999999877 33332 366655 99999
Q ss_pred EEEECCCC-ceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEE
Q 011916 362 RFWNTSNG-HQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVT 439 (475)
Q Consensus 362 ~iwd~~~~-~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 439 (475)
.+|+-... +++... .|..-|..+.|+||++++++ ++-|+.|++|+..+++.+.++.+|-+.|+.++|+.|.++|++
T Consensus 349 flW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IAS--aSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS 426 (480)
T KOG0271|consen 349 FLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIAS--ASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS 426 (480)
T ss_pred EEecccccccchhhhhchhhheeeEEECCCccEEEE--eecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEE
Confidence 99996543 355444 57788999999999999999 788999999999999999999999999999999999999999
Q ss_pred EeCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 440 GAGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
|+.|.+|++|++.+.....-+. +...|+.++
T Consensus 427 ~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vD 458 (480)
T KOG0271|consen 427 GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVD 458 (480)
T ss_pred cCCCceEEEEEeeeeeecccCCCCCceEEEEE
Confidence 9999999999999998887766 666665443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-42 Score=316.82 Aligned_cols=278 Identities=27% Similarity=0.507 Sum_probs=252.7
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECC
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-----EGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-----dg~~la~g~~dg~v~iwd~~ 239 (475)
++-+|.|++|+|| .+++++.+|.|.+||..+++.....-.+|...|++++|.| ..++||+++.||.|+|||+.
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 5678999999998 4666667999999999999876655459999999999976 56799999999999999999
Q ss_pred CCeeeEEecCCCCceEEEEeCC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEc-----------CCC---
Q 011916 240 QCKRVRTFGGHQTRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS-----------HDD--- 304 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-----------~~~--- 304 (475)
.+.++..+.+|+..|+|+.|.| .+|++|+.|++|++|+.. .+.+...+.+|...|+.|+.+ |.+
T Consensus 236 ~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~-dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 236 LGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRAL-DGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred CceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEcc-chhHHHhhcccchheeeeeccchhhhhccccccccccC
Confidence 9999999999999999999975 899999999999999998 688899999999999999887 223
Q ss_pred ----------------------CEEEEEeCCCcEEEEECCC-CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 305 ----------------------RELASGGNDNQLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 305 ----------------------~~lasg~~Dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
..|++|+.|.++.+|+... .+++..+.+|..-|+.+.|+||+++ +++++ .|..|
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~-IASaS--FDkSV 391 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRY-IASAS--FDKSV 391 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccE-EEEee--cccce
Confidence 3499999999999999764 4588889999999999999999995 45544 89999
Q ss_pred EEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEE
Q 011916 362 RFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
++||-++|+.+..+. |-..|..++|+.|.+.|++ |+.|.++++|++++.+....+.+|.+.|.++.|+|||+.+++|
T Consensus 392 kLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS--~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sg 469 (480)
T KOG0271|consen 392 KLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVS--GSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASG 469 (480)
T ss_pred eeeeCCCcchhhhhhhccceeEEEEeccCccEEEE--cCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecC
Confidence 999999999999997 7789999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEe
Q 011916 441 AGDETLRFWN 450 (475)
Q Consensus 441 s~Dg~I~iW~ 450 (475)
+.|..+++|.
T Consensus 470 gkdkv~~lw~ 479 (480)
T KOG0271|consen 470 GKDKVLRLWR 479 (480)
T ss_pred CCceEEEeec
Confidence 9999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=319.57 Aligned_cols=284 Identities=21% Similarity=0.377 Sum_probs=257.6
Q ss_pred ccCCCCCCCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCC--CCEEEEEeCCCeEEE
Q 011916 160 LDAPSLQDDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTRE--GSYISVGTNLGQVQV 235 (475)
Q Consensus 160 l~~p~~~~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spd--g~~la~g~~dg~v~i 235 (475)
|....+.++-.+..+.++.+ .+++++.+|.++||+..+...+..+. +|...|.++.|+|. +..||+|+.||++++
T Consensus 167 l~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 167 LVCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceee
Confidence 34445567777888888876 57777779999999999998888876 99999999999996 679999999999999
Q ss_pred EECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC
Q 011916 236 WDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND 313 (475)
Q Consensus 236 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D 313 (475)
|++.+...+..+.+|..+|..++|+ |++|++++.|.+-++||++ .+..+....+|...|.+++|.+||.++++||.|
T Consensus 246 w~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~-tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 246 WKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE-TKSELLLQEGHSKGVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred eccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccc-cchhhHhhcccccccceeEecCCCceeeccCcc
Confidence 9999999999999999999999995 7999999999999999999 566677788999999999999999999999999
Q ss_pred CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcC-CCC
Q 011916 314 NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSK-NVN 391 (475)
Q Consensus 314 g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~-~~~ 391 (475)
..-+|||+++++++..+.+|..+|.+|+|+|+|. .+++|+ .|++++|||++...++..+. |.+-|..+.|+| .|.
T Consensus 325 ~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy-~lATgs--~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~ 401 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY-HLATGS--SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGY 401 (459)
T ss_pred chhheeecccCcEEEEecccccceeeEeECCCce-EEeecC--CCCcEEEeeecccccceecccccchhhheEecccCCe
Confidence 9999999999999999999999999999999998 555554 89999999999999888885 677899999999 455
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
+|++ ++-|+.++||...++.++..+.||++.|.++.+++|+++|+|++.|.++++|.
T Consensus 402 fL~T--asyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 402 FLVT--ASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EEEE--cccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 5555 66899999999999999999999999999999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=293.40 Aligned_cols=275 Identities=23% Similarity=0.427 Sum_probs=253.7
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC----- 241 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~----- 241 (475)
-.|.+++|+++ .+++++.||.+.|||.-+...+..+.+ ....|..++|+|.|+++|+|+-|....||++.+.
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~ 134 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGN 134 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCCCeEEecCcCceeEEEeccccccccc
Confidence 34677999987 688888999999999998887777764 3678999999999999999999999999999854
Q ss_pred -eeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEE
Q 011916 242 -KRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLV 318 (475)
Q Consensus 242 -~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~i 318 (475)
+..+++.+|.+.+.|+.| +...|++++.|.+..+||++ .++.+..+.+|.+.|.++.++| +++.+++|+-|+..++
T Consensus 135 ~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie-~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~akl 213 (343)
T KOG0286|consen 135 VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIE-TGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKL 213 (343)
T ss_pred ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcc-cceEEEEecCCcccEEEEecCCCCCCeEEecccccceee
Confidence 456778999999999999 77899999999999999999 7888899999999999999999 9999999999999999
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEE
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVS 395 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~ 395 (475)
||++.+..++.|.+|+..|++|.|.|+|..+ ++ |+.|+++++||++..+.+..+.+. ..|++++|+..|++|++
T Consensus 214 WD~R~~~c~qtF~ghesDINsv~ffP~G~af-at--GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfa 290 (343)
T KOG0286|consen 214 WDVRSGQCVQTFEGHESDINSVRFFPSGDAF-AT--GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFA 290 (343)
T ss_pred eeccCcceeEeecccccccceEEEccCCCee-ee--cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEe
Confidence 9999999999999999999999999999854 44 459999999999999999888654 57999999999999999
Q ss_pred EEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
|+.|..+.+||.-.++.+..+.+|.++|.+|..+|||.-|+||+.|.+||||.
T Consensus 291 --gy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 291 --GYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred --eecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999999999999999999999999999999999999999999999994
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=303.46 Aligned_cols=258 Identities=25% Similarity=0.421 Sum_probs=241.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC----CEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS----RILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~----~~l~sgs~dg~I~iwd~~~~~ 282 (475)
+...+|..+.|+.|++.||+|+.+|.++||+..+...+.++.+|...|.++.|++ ..+++|+.||++++|++. ..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~-~e 251 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS-QE 251 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccC-CC
Confidence 5678999999999999999999999999999999999999999999999999964 489999999999999998 56
Q ss_pred ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 283 DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
..+..+.+|...|..++|+|+|++|++++.|.+-++||+.++..+....+|...|.+++|.|||. |+++|| .|..-+
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGS-L~~tGG--lD~~~R 328 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGS-LAATGG--LDSLGR 328 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCc-eeeccC--ccchhh
Confidence 88899999999999999999999999999999999999999999988899999999999999999 888877 999999
Q ss_pred EEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC-CCCEEEEE
Q 011916 363 FWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-DGQTIVTG 440 (475)
Q Consensus 363 iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~ 440 (475)
|||+++|.++..+. |..+|..+.|+|+|..|++ |+.|++++|||++....+.++.+|..-|..+.|+| .|.+|+|+
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lAT--gs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Ta 406 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLAT--GSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTA 406 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEee--cCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEc
Confidence 99999999999885 6688999999999999999 99999999999999999999999999999999998 78999999
Q ss_pred eCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 441 AGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 441 s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
+.|++++||.-.+..+.+.+. |++.|.|++
T Consensus 407 syD~t~kiWs~~~~~~~ksLaGHe~kV~s~D 437 (459)
T KOG0272|consen 407 SYDNTVKIWSTRTWSPLKSLAGHEGKVISLD 437 (459)
T ss_pred ccCcceeeecCCCcccchhhcCCccceEEEE
Confidence 999999999999999988865 555676654
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=275.15 Aligned_cols=273 Identities=26% Similarity=0.384 Sum_probs=237.1
Q ss_pred eeEEecC---CCCEEEEEcCCeEEEEECCC-----CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 171 LNLVDWS---SQNVLAVGLGTCVYLWTASN-----SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 171 v~~l~ws---~~~~la~~~~~~V~lw~~~~-----~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
|..++-. ++.++.++.|..+.+|++.. |...+.+. +|...|..+..++||++.++++.|+++++||+.+++
T Consensus 18 Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~ 96 (315)
T KOG0279|consen 18 VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE 96 (315)
T ss_pred EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccccceEEEEEecCCc
Confidence 4444444 34577778899999998764 45566666 899999999999999999999999999999999999
Q ss_pred eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecC--ccCCEEEEEEcCC--CCEEEEEeCCCcE
Q 011916 243 RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAG--HKSEVCGLKWSHD--DRELASGGNDNQL 316 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s~~--~~~lasg~~Dg~I 316 (475)
..+.|.+|...|.+++++ ...+++|++|++|++|++.. .+..++.. |...|.|+.|+|+ ..+|++++.|++|
T Consensus 97 ~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g--~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~Dktv 174 (315)
T KOG0279|consen 97 STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG--VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTV 174 (315)
T ss_pred EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc--cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceE
Confidence 999999999999999995 58999999999999999973 33333333 3789999999997 6799999999999
Q ss_pred EEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
++||+++.+....+.+|.+.++.++++|||. +.++|+ .||.+.+||++.++.+..+++...|.+++|+|+.-.|+++
T Consensus 175 KvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs-lcasGg--kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 175 KVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS-LCASGG--KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred EEEccCCcchhhccccccccEEEEEECCCCC-EEecCC--CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeec
Confidence 9999999999999999999999999999999 777776 9999999999999999999999999999999998888774
Q ss_pred EecCCCeEEEEECCCCceEEEecC----C-----CcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 397 HGYSQNQIMVWKYPSMAKVSTLTG----H-----SLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~~~~~l~~----h-----~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+ +..|+|||+.+...+.++.. . ......++|++||+.|++|-.|+.|++|.+.
T Consensus 252 t---~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 252 T---ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred c---CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 3 44599999999888776652 1 3346788999999999999999999999975
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=262.08 Aligned_cols=273 Identities=22% Similarity=0.341 Sum_probs=236.9
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEE
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLA 258 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~ 258 (475)
++++|.|.+|++|.+.+|.....+. ..+..|..+...|+++.||+++. -.|++||+.+++ ++.++.+|...|+++.
T Consensus 13 LvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVg 90 (311)
T KOG0315|consen 13 LVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVG 90 (311)
T ss_pred EEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEE
Confidence 5566779999999999999999986 45789999999999999999988 689999998764 5889999999999999
Q ss_pred e--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-cccc
Q 011916 259 W--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-EHTA 335 (475)
Q Consensus 259 ~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-~h~~ 335 (475)
| +|+.+++|++||+++|||++. ...++...|..+|+++..+|+...|++|.++|.|+|||+....+...+. +...
T Consensus 91 F~~dgrWMyTgseDgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~ 168 (311)
T KOG0315|consen 91 FQCDGRWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT 168 (311)
T ss_pred EeecCeEEEecCCCceEEEEeccC--cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence 9 689999999999999999994 4445566688999999999999999999999999999999876555443 3457
Q ss_pred ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee------eee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL------NSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~------~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
.|.++...|||+.+++.. ..|.+++|++-+.... ..+ .+.+.+..+.+||++++|++ +++|..++||+
T Consensus 169 ~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat--~ssdktv~iwn 243 (311)
T KOG0315|consen 169 SIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT--CSSDKTVKIWN 243 (311)
T ss_pred ceeeEEEcCCCcEEEEec---CCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe--ecCCceEEEEe
Confidence 899999999999777743 7999999998775433 233 36678999999999999999 78999999999
Q ss_pred CCCC-ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCccc
Q 011916 409 YPSM-AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 409 ~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
..+. +.-..+++|...+...+||.||+||+||+.|+++++|++..+++......
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~g 298 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQG 298 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCC
Confidence 9988 66677889999999999999999999999999999999999987666543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=280.06 Aligned_cols=281 Identities=22% Similarity=0.413 Sum_probs=252.1
Q ss_pred CCCCCCceeEEecCCC-CEEEE-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 011916 164 SLQDDFYLNLVDWSSQ-NVLAV-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 164 ~~~~d~~v~~l~ws~~-~~la~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~ 241 (475)
...+.-.|++++|+.+ .+||. ..+|.++||+........+- .|.++|.++.|+.+|+||++++-||++.+||..++
T Consensus 231 s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~--~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 231 SVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLG--QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred cCCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhh--ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 3445567999999975 45554 55999999998766544333 68999999999999999999999999999999999
Q ss_pred eeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 242 KRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 242 ~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
.....+..|......+.| +...+++++.|+.|+++.+. ...++.++.+|.++|.+|.|+|.|.+|++++.|++++||.
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~-~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVG-EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS 387 (524)
T ss_pred eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEec-CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence 999999999999889999 67899999999999999998 6778889999999999999999999999999999999999
Q ss_pred CCCCceeEEEeccccceeEEEECCCCC--------cEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCC
Q 011916 321 QHSQQPTLRLTEHTAAVKAIAWSPHQS--------SLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVN 391 (475)
Q Consensus 321 ~~~~~~~~~~~~h~~~v~~l~~sp~~~--------~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~ 391 (475)
.........+..|...|..+.|+|.|. ..+++++ .|++|++||+..+.++..+ +|..+|.+++|+|+|+
T Consensus 388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas--~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ 465 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS--FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGR 465 (524)
T ss_pred cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee--cCCeEEEEEccCCceeEeeccCCCceEEEEecCCCc
Confidence 999989999999999999999999764 2444444 7999999999999999999 7899999999999999
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
++++ |+.||.|.+|+.++++.+..+.+ ++.|..|+|+.+|..|..+..||.+++-|+.
T Consensus 466 ylAs--Gs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 466 YLAS--GSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEe--cCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999 99999999999999999998875 4569999999999999999999999999874
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=285.56 Aligned_cols=289 Identities=22% Similarity=0.405 Sum_probs=247.8
Q ss_pred ceeccCCCCCCCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 157 HKVLDAPSLQDDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 157 ~~~l~~p~~~~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
.+...+...+....|+.+.|.|+ .+++++..|.+.||+..+-....+.. .|+..|.++.|+++|.++++|..+|.|+
T Consensus 85 tKf~h~s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQ-aHDs~Vr~m~ws~~g~wmiSgD~gG~iK 163 (464)
T KOG0284|consen 85 TKFVHTSSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQ-AHDSPVRTMKWSHNGTWMISGDKGGMIK 163 (464)
T ss_pred cceEeccccccccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhh-hhcccceeEEEccCCCEEEEcCCCceEE
Confidence 34444444455567899999997 68888999999999985443333333 8999999999999999999999999999
Q ss_pred EEECCCCeeeEEecCC-CCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe
Q 011916 235 VWDGTQCKRVRTFGGH-QTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG 311 (475)
Q Consensus 235 iwd~~~~~~~~~~~~h-~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~ 311 (475)
+|+..- ..++.+..| ...|.+++|+ ...+++++.||+|+|||.. ..+....+.+|.-.|.+++|+|...++|+|+
T Consensus 164 yWqpnm-nnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~-~~kee~vL~GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 164 YWQPNM-NNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR-MPKEERVLRGHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred ecccch-hhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc-CCchhheeccCCCCcceeccCCccceeEEcc
Confidence 999653 444555554 4899999995 5899999999999999998 5556667899999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCC
Q 011916 312 NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNV 390 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~ 390 (475)
.|+.|++||.+++.++.++..|+..|.++.|+|++.+ +++++ .|..++++|+++.+.+..+. |...+.++.|+|-.
T Consensus 242 kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~-Llt~s--kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~ 318 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNW-LLTGS--KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLN 318 (464)
T ss_pred CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCe-eEEcc--CCceEEEEehhHhHHHHHhhcchhhheeecccccc
Confidence 9999999999999999999999999999999999975 45544 99999999999888888876 78899999999988
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEec-CCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKVSTLT-GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
.-|+++ |+.||.|..|.+...+++..+. +|...|++|+|+|-|.+|++|+.|.++++|.-.
T Consensus 319 ~~lfts-gg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 319 ESLFTS-GGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccceee-ccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 887776 7789999999998666666664 699999999999999999999999999999754
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=276.76 Aligned_cols=304 Identities=20% Similarity=0.428 Sum_probs=256.0
Q ss_pred CcCCCCCceeccCCCCCCCCceeEEecCCC--CEEEEEc-CCeEEEEECCCC--cEEEEe-----------eCCCCCcEE
Q 011916 150 RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQ--NVLAVGL-GTCVYLWTASNS--KVTRLC-----------DLGPGDSVC 213 (475)
Q Consensus 150 r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~--~~la~~~-~~~V~lw~~~~~--~~~~~~-----------~~~~~~~V~ 213 (475)
..||..-.+++. +.-.|.+.+|+|- .+++++. +...++|++... ...... .......|+
T Consensus 165 ~~I~~~~~kvl~-----~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT 239 (524)
T KOG0273|consen 165 VEIPSSKAKVLR-----HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVT 239 (524)
T ss_pred ccccccceeecc-----CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcc
Confidence 345555555554 3445788999994 4666655 778999998751 111111 112346899
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCc
Q 011916 214 SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGH 291 (475)
Q Consensus 214 ~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 291 (475)
+++|+.+|..||+|..||.++||+ .++.++.++..|.++|.++.|+ |++|++++.|+++.+||.. .+...+.+..|
T Consensus 240 ~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~-~g~~~q~f~~~ 317 (524)
T KOG0273|consen 240 SLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAH-TGTVKQQFEFH 317 (524)
T ss_pred eEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEecc-CceEEEeeeec
Confidence 999999999999999999999999 5678889999999999999996 6899999999999999998 67777888889
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ 371 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~ 371 (475)
..+-..+.|-. ...+++++.|+.|+|+.+....++.++.+|.+.|.+|.|+|.+. |+++++ .|++++||+.....+
T Consensus 318 s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~-LLaS~S--dD~TlkiWs~~~~~~ 393 (524)
T KOG0273|consen 318 SAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGS-LLASCS--DDGTLKIWSMGQSNS 393 (524)
T ss_pred cCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCc-eEEEec--CCCeeEeeecCCCcc
Confidence 88878899964 45889999999999999999999999999999999999999999 666665 899999999988888
Q ss_pred eeeec-CCCCeeEEEEcCCCC---------eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 372 LNSVD-TGSQVCNLAWSKNVN---------ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 372 ~~~~~-~~~~v~~l~~s~~~~---------~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
...+. |...|..+.|+|.|. .+++ ...|+.|++||+..+.++..|..|+.+|++++|+|+|+++|+|+
T Consensus 394 ~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~s--as~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 394 VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLAS--ASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred hhhhhhhccceeeEeecCCCCccCCCcCCceEEE--eecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecC
Confidence 88775 666899999998763 3444 66899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecCCCCCCCCcccCCcc
Q 011916 442 GDETLRFWNVFPSLKAPALVKDTSL 466 (475)
Q Consensus 442 ~Dg~I~iW~~~~~~~~~~~~~~~~v 466 (475)
.||.|.+|++..+...+.......+
T Consensus 472 ~dg~V~iws~~~~~l~~s~~~~~~I 496 (524)
T KOG0273|consen 472 LDGCVHIWSTKTGKLVKSYQGTGGI 496 (524)
T ss_pred CCCeeEeccccchheeEeecCCCeE
Confidence 9999999999999988887776664
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=269.59 Aligned_cols=278 Identities=23% Similarity=0.384 Sum_probs=252.2
Q ss_pred CCceeEEecCCCC-EEEE-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-Ceee
Q 011916 168 DFYLNLVDWSSQN-VLAV-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ-CKRV 244 (475)
Q Consensus 168 d~~v~~l~ws~~~-~la~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~-~~~~ 244 (475)
...|..+-+.|.. +++. +.+.+|++||..++++...+. +|.+.|..|+|+..|++||+++.|-.+++||.++ .+++
T Consensus 108 r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ 186 (406)
T KOG0295|consen 108 RSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI 186 (406)
T ss_pred ccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH
Confidence 3456667778874 3333 359999999999999977766 8999999999999999999999998899999987 6788
Q ss_pred EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 245 RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
+.+.+|...|.++.| .|++|+++++|.+|+.|++. .+.++.++.+|...|..+..+.||.++|+++.|.+|++|-+.
T Consensus 187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~-tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~ 265 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD-TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVA 265 (406)
T ss_pred HHhcCcccceeeEEEEecCCeeeecccccceeEEecc-cceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEec
Confidence 889999999999998 57999999999999999999 788899999999999999999999999999999999999999
Q ss_pred CCceeEEEeccccceeEEEECCCC--------------CcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEc
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQ--------------SSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWS 387 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~--------------~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s 387 (475)
++++...+++|+-+|.+++|.|.. ..++.+++ .|++|++||+.+|.++.++ .|...|+.++|+
T Consensus 266 t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~ 343 (406)
T KOG0295|consen 266 TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS 343 (406)
T ss_pred cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec--ccceEEEEeccCCeEEEEEecccceeeeeEEc
Confidence 999989999999999999997742 23666654 9999999999999999988 578899999999
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 388 KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
|.|++|++ ..+|+.+++||+.+.+++..+..|+.-|+++.|+.+-.+++||+-|.++++|..
T Consensus 344 p~Gkyi~S--caDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 344 PGGKYILS--CADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCCeEEEE--EecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999 679999999999999999999999999999999999999999999999999974
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=264.78 Aligned_cols=276 Identities=30% Similarity=0.502 Sum_probs=245.1
Q ss_pred CCceeEEecCCC-CEE-EEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ-NVL-AVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~-~~l-a~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.-.+.+++|+++ +++ +++.++.|++|+..+++...... .|...+..+.|++++++|++++.+|.|++|++.+++.+.
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~ 87 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR 87 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceE
Confidence 346889999996 444 44559999999999887666654 677889999999999999999999999999999988888
Q ss_pred EecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.+..|...+.++.|++ .++++++.|+.|.+||++ .......+..|...|.++.|++++.++++++.|+.|++||++.
T Consensus 88 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 166 (289)
T cd00200 88 TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166 (289)
T ss_pred EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECC-CcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc
Confidence 9999999999999964 788888889999999998 5666777788999999999999999999988899999999999
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
++.+..+..|...+.+++|+|++..+++++ .|+.|++||+.+++.+..+ .+...+.++.|++++..+++ +..++
T Consensus 167 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~ 241 (289)
T cd00200 167 GKCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS--GSEDG 241 (289)
T ss_pred cccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE--EcCCC
Confidence 988888889999999999999998666654 5999999999999988888 67779999999999777776 66799
Q ss_pred eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.|++||+.+++.+..+..|...|.+++|++++.+|++++.|+.|++|+
T Consensus 242 ~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 999999999999999999999999999999999999999999999996
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=273.47 Aligned_cols=256 Identities=23% Similarity=0.433 Sum_probs=227.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
...|..|.|.|+|+.|++|+..|.+.+|+.........+..|...|.++.| ++..+++|+.+|.|++|+.. ...++
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn--mnnVk 173 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPN--MNNVK 173 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccc--hhhhH
Confidence 467999999999999999999999999998666666667799999999999 68999999999999999986 33444
Q ss_pred EecCcc-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 287 KLAGHK-SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 287 ~~~~h~-~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
.+.+|. ..|.+++|+|+...+++++.||+|+|||....+....+.+|...|++++|+|... |+++|+ .|..|++||
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kg-Liasgs--kDnlVKlWD 250 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKG-LIASGS--KDNLVKLWD 250 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccc-eeEEcc--CCceeEeec
Confidence 455544 8999999999999999999999999999999998889999999999999999877 788876 999999999
Q ss_pred CCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC-CCCEEEEEeCC
Q 011916 366 TSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-DGQTIVTGAGD 443 (475)
Q Consensus 366 ~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~D 443 (475)
.++|.|+.++ .|...|..+.|++++++|++ ++.|..+++||+++++.+..+++|...|+++.|+| ...+|.+|+.|
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt--~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLT--GSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEE--ccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC
Confidence 9999999988 46788999999999999999 88999999999999999999999999999999999 45678889999
Q ss_pred CCEEEEecCCCCCCCC--cccCCccccccC
Q 011916 444 ETLRFWNVFPSLKAPA--LVKDTSLWSLGR 471 (475)
Q Consensus 444 g~I~iW~~~~~~~~~~--~~~~~~v~s~~~ 471 (475)
|.|..|.+........ ..++..|||+.-
T Consensus 329 gsvvh~~v~~~~p~~~i~~AHd~~iwsl~~ 358 (464)
T KOG0284|consen 329 GSVVHWVVGLEEPLGEIPPAHDGEIWSLAY 358 (464)
T ss_pred CceEEEeccccccccCCCcccccceeeeec
Confidence 9999999985555444 457788999853
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=251.20 Aligned_cols=276 Identities=21% Similarity=0.334 Sum_probs=238.0
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
--|+.+.|+|+ -++++|.|..|.||++.....-.....+|.+.|..+.|.+|++.|++++.|.+|+.||+++++.++.
T Consensus 48 geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk 127 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRK 127 (338)
T ss_pred ceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeeh
Confidence 34667888886 3666677999999997654433332238999999999999999999999999999999999999999
Q ss_pred ecCCCCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 247 FGGHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 247 ~~~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
+++|...|.++.. +..++.+|+.||++++||+| ....++.+ ..+.+++++.|..++..+.+|+-|+.|++||++.
T Consensus 128 ~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R-~k~~~~t~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~ 205 (338)
T KOG0265|consen 128 HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR-KKEAIKTF-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRK 205 (338)
T ss_pred hccccceeeecCccccCCeEEEecCCCceEEEEeec-ccchhhcc-ccceeEEEEEecccccceeeccccCceeeecccc
Confidence 9999999999987 35789999999999999999 44444443 3467799999999999999999999999999999
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC----ceeeeec-----CCCCeeEEEEcCCCCeEE
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG----HQLNSVD-----TGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~----~~~~~~~-----~~~~v~~l~~s~~~~~l~ 394 (475)
...++.+.+|...|+.|..+++|.+++.- +.|.++++||++-. .++..+. .......++|+|++..+.
T Consensus 206 ~d~~~~lsGh~DtIt~lsls~~gs~llsn---sMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ 282 (338)
T KOG0265|consen 206 NDGLYTLSGHADTITGLSLSRYGSFLLSN---SMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKIT 282 (338)
T ss_pred CcceEEeecccCceeeEEeccCCCccccc---cccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccc
Confidence 99999999999999999999999987774 38999999999753 3355443 223567789999999999
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+ |+.|..+++||..+...+..+.||.+.|++++|+|...+|.+++.|.+|++=++
T Consensus 283 a--gs~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 283 A--GSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGEI 337 (338)
T ss_pred c--ccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeecc
Confidence 8 999999999999999999999999999999999999999999999999987544
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=274.47 Aligned_cols=287 Identities=20% Similarity=0.370 Sum_probs=246.5
Q ss_pred CCCceeEEecCCC-CEEEEEcC--CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLG--TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~--~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
.+..+..+.|+.. .-+|.+.. |.+.||+..+...+...+ +|-..+++++++|||+++|+|+.||.|+|||...+-+
T Consensus 306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC 384 (893)
T KOG0291|consen 306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC 384 (893)
T ss_pred ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE
Confidence 3455677788753 56666665 499999999888766655 8999999999999999999999999999999999999
Q ss_pred eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecC-ccCCEEEEEEcCCCCEEEEEeCCC-cEEEE
Q 011916 244 VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAG-HKSEVCGLKWSHDDRELASGGNDN-QLLVW 319 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~s~~~~~lasg~~Dg-~I~iw 319 (475)
..+|..|+..|+.+.| .++.+++.+-||+|+.||+. .....+++.. ..-...|++..|.|..+..|+.|. .|++|
T Consensus 385 ~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk-RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvW 463 (893)
T KOG0291|consen 385 FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK-RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVW 463 (893)
T ss_pred EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec-ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEE
Confidence 9999999999999999 58999999999999999998 5555555543 344578899999999999999886 69999
Q ss_pred ECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-CceeeeecCCCCeeEEEEcCCCCeEEEEEe
Q 011916 320 NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVDTGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 320 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g 398 (475)
++++|+.+-.+.+|+++|.+++|+|++. ++++++ .|.+|++||+-. ...+..++..+.+..++|.|+|++|++ .
T Consensus 464 S~qTGqllDiLsGHEgPVs~l~f~~~~~-~LaS~S--WDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaV--a 538 (893)
T KOG0291|consen 464 SVQTGQLLDILSGHEGPVSGLSFSPDGS-LLASGS--WDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAV--A 538 (893)
T ss_pred EeecCeeeehhcCCCCcceeeEEccccC-eEEecc--ccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEE--E
Confidence 9999999999999999999999999999 677755 999999999754 456777888999999999999999999 6
Q ss_pred cCCCeEEEEECCCCceEEEecC--------------------CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 399 YSQNQIMVWKYPSMAKVSTLTG--------------------HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~~~~~l~~--------------------h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
..||+|.+||...+..+..+.+ .....+.+++++||.+|++|+....|++|++.++-..+
T Consensus 539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 7899999999987766644432 12457899999999999999999999999999887766
Q ss_pred Cc
Q 011916 459 AL 460 (475)
Q Consensus 459 ~~ 460 (475)
++
T Consensus 619 kf 620 (893)
T KOG0291|consen 619 KF 620 (893)
T ss_pred eE
Confidence 54
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=254.92 Aligned_cols=275 Identities=22% Similarity=0.382 Sum_probs=234.5
Q ss_pred eeEEecCCC-CEEEE-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 171 LNLVDWSSQ-NVLAV-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 171 v~~l~ws~~-~~la~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
|.+++-+|+ ++++. |.|..-+||+..++.....+. +|++.|+++.|+.+|.+||+|..+|.|+||++.++.....+.
T Consensus 67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~ 145 (399)
T KOG0296|consen 67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD 145 (399)
T ss_pred eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee
Confidence 555666665 44444 458899999999999776665 999999999999999999999999999999999999888887
Q ss_pred CCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 249 GHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 249 ~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
..-..+.-+.|++ ++|+.|+.||.+.+|.+. .+...+.+.+|...+++=.|.|+|+.++++..||+|++|++.++.+
T Consensus 146 ~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip-~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p 224 (399)
T KOG0296|consen 146 QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP-SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP 224 (399)
T ss_pred cccCceEEEEecccccEEEeecCCCcEEEEECC-CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce
Confidence 6667777888874 899999999999999998 4477888999999999999999999999999999999999999887
Q ss_pred eEEEec---------------------------------------------------cccceeEEEECCCCC--cEEEEe
Q 011916 327 TLRLTE---------------------------------------------------HTAAVKAIAWSPHQS--SLLASG 353 (475)
Q Consensus 327 ~~~~~~---------------------------------------------------h~~~v~~l~~sp~~~--~ll~sg 353 (475)
+..+.. +...+.++.+.|... -|+++|
T Consensus 225 ~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G 304 (399)
T KOG0296|consen 225 LHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG 304 (399)
T ss_pred eEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc
Confidence 665531 111112222222221 155554
Q ss_pred cCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 354 GGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 354 ~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
+.||+|.|||+...+......+...|..+.|-+ ..+|++ ++.+|.|++||.++++.+.++.||...|.+++++|+
T Consensus 305 --~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t--~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~ 379 (399)
T KOG0296|consen 305 --SVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLT--ACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQ 379 (399)
T ss_pred --cccceEEEEecccchhheeccCCCceEEEEEcC-cchhee--eccCceEEeeeccccceEEEEecCchheeEEEEcCC
Confidence 499999999999999999999999999999999 788888 779999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEecC
Q 011916 434 GQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~ 452 (475)
+++++|++.|++.+||++.
T Consensus 380 ~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CcEEEEecCCCeEEEEecC
Confidence 9999999999999999875
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=267.39 Aligned_cols=274 Identities=22% Similarity=0.392 Sum_probs=241.4
Q ss_pred ceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
-|.|+.+..+.++++..|++|+|||..+-.....+. +|.+.|.|+.|. .+.|++|+.|.+|+|||+++++++.++-+
T Consensus 199 gVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlih 275 (499)
T KOG0281|consen 199 GVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIH 275 (499)
T ss_pred ceEEEEecchhhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhh
Confidence 477899988899999999999999999988877775 999999999985 56999999999999999999999999999
Q ss_pred CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCc--cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 011916 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSD--YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT 327 (475)
Q Consensus 250 h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~ 327 (475)
|...|..+.|++.++++++.|.+|.+||+..+.. ....+.+|...|..+.|+ .+++++++.|.+|++|++.+++.+
T Consensus 276 HceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efv 353 (499)
T KOG0281|consen 276 HCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFV 353 (499)
T ss_pred hcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeee
Confidence 9999999999999999999999999999985542 345578999999999994 569999999999999999999999
Q ss_pred EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEE
Q 011916 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 406 (475)
.++.+|...|.|+.+. ++ ++++|+ .|.+|++||+..|.++..++ |..-|.++.|. .+.+++ |.-||.|++
T Consensus 354 Rtl~gHkRGIAClQYr--~r-lvVSGS--SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVS--GaYDGkikv 424 (499)
T KOG0281|consen 354 RTLNGHKRGIACLQYR--DR-LVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVS--GAYDGKIKV 424 (499)
T ss_pred hhhhcccccceehhcc--Ce-EEEecC--CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeee--ccccceEEE
Confidence 9999999999888874 33 788865 99999999999999999986 55668899885 567888 889999999
Q ss_pred EECCCCc---------eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 407 WKYPSMA---------KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 407 wd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
||+..+. ++.++..|+++|..+.| |...+++++.|.+|.|||+..+.....
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPSAA 484 (499)
T ss_pred EecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcccc
Confidence 9997653 34556679999999999 777899999999999999998876644
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=243.36 Aligned_cols=273 Identities=21% Similarity=0.400 Sum_probs=225.2
Q ss_pred ceeEEecCCCC---EEEEEcCCeEEEEECCCC---cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--C
Q 011916 170 YLNLVDWSSQN---VLAVGLGTCVYLWTASNS---KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ--C 241 (475)
Q Consensus 170 ~v~~l~ws~~~---~la~~~~~~V~lw~~~~~---~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~--~ 241 (475)
.+-.++|+|.. ++++|.|+.|++|+...+ .....++-+|...|.+++|+|.|++||+|+.|.++.||.-.. .
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~ef 95 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEF 95 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCce
Confidence 56779999973 455566899999999853 233334447899999999999999999999999999998654 4
Q ss_pred eeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCC--CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 242 KRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVS--SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 242 ~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
+++.+++||...|.+++| +|++|+++++|+.|.||.+... ..+...++.|.+.|..+.|+|...+|++++.|++|+
T Consensus 96 ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 96 ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIK 175 (312)
T ss_pred eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEE
Confidence 788999999999999999 5899999999999999999833 356778999999999999999999999999999999
Q ss_pred EEECC---CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEE
Q 011916 318 VWNQH---SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 318 iwd~~---~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 394 (475)
+|+-. ...+++++.+|...|.+++|++.|..|+.+ +.|++++||-..+. ....+..++..+.|. ...|+
T Consensus 176 ~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~---sdD~tv~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~Ia 247 (312)
T KOG0645|consen 176 VYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSC---SDDGTVSIWRLYTD---LSGMHSRALYDVPWD--NGVIA 247 (312)
T ss_pred EEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEe---cCCcceEeeeeccC---cchhcccceEeeeec--ccceE
Confidence 99876 346789999999999999999999866553 38999999986521 122356788999998 44566
Q ss_pred EEEecCCCeEEEEECCCC------ceEE-EecCCCcceEEEEECCC-CCEEEEEeCCCCEEEEecC
Q 011916 395 STHGYSQNQIMVWKYPSM------AKVS-TLTGHSLRVLYLATSPD-GQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~------~~~~-~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iW~~~ 452 (475)
+ +..|+.|++|.-... +.+. .-..|...|++++|+|. ...|++|+.||.|++|.+.
T Consensus 248 S--~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 248 S--GGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred e--ccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 6 778999999976532 2222 22358899999999995 6789999999999999874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=284.64 Aligned_cols=244 Identities=23% Similarity=0.421 Sum_probs=223.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-------------------------------eeeEEecCCCCceEE
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC-------------------------------KRVRTFGGHQTRAGV 256 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~-------------------------------~~~~~~~~h~~~v~~ 256 (475)
....++|..|++|+.+||.|..|..|++|.+... ...+++.+|.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 3567999999999999999999999999987631 122456799999999
Q ss_pred EEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccc
Q 011916 257 LAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHT 334 (475)
Q Consensus 257 l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~ 334 (475)
+.|+ .++|++++.|+++++|.+. ....+..+.+|..+|+.+.|+|.|-++||++.|++.++|......++..+.+|-
T Consensus 457 ~sFsPd~rfLlScSED~svRLWsl~-t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghl 535 (707)
T KOG0263|consen 457 CSFSPDRRFLLSCSEDSSVRLWSLD-TWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHL 535 (707)
T ss_pred eeecccccceeeccCCcceeeeecc-cceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccc
Confidence 9996 4899999999999999999 677788889999999999999999999999999999999999999999999999
Q ss_pred cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q 011916 335 AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 335 ~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~ 413 (475)
+.|.|+.|+|+..++ ++| +.|.++++||+.+|..++.+ .|.++|.+++|+|+|++|++ |..||.|.+||+.++.
T Consensus 536 sDV~cv~FHPNs~Y~-aTG--SsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaS--g~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYV-ATG--SSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLAS--GDEDGLIKIWDLANGS 610 (707)
T ss_pred cccceEEECCccccc-ccC--CCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEee--cccCCcEEEEEcCCCc
Confidence 999999999999854 554 59999999999999999998 47799999999999999999 9999999999999999
Q ss_pred eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 414 KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 414 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
.+..+.+|++.|.+|.|+.||..||+|+.|.+|++||+......
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence 99999999999999999999999999999999999999865554
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=258.03 Aligned_cols=259 Identities=22% Similarity=0.310 Sum_probs=235.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|...|+.+-|+|+-..+++++.|++|++||..++++.+.+++|...|..++|+ |.+|++++.|-.+.+||......+
T Consensus 106 g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c 185 (406)
T KOG0295|consen 106 GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRC 185 (406)
T ss_pred ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999995 799999999999999999866778
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
+..+.+|...|.++.|-|.|.++++++.|.+|+.|++.++.++.++.+|...|.-++.+.||. |+++++ .|.++++|
T Consensus 186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-i~As~s--~dqtl~vW 262 (406)
T KOG0295|consen 186 IKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-IIASCS--NDQTLRVW 262 (406)
T ss_pred HHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-EEEecC--CCceEEEE
Confidence 888999999999999999999999999999999999999999999999999999999999998 777765 99999999
Q ss_pred ECCCCceeeee-cCCCCeeEEEEcCC---------------CCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEE
Q 011916 365 NTSNGHQLNSV-DTGSQVCNLAWSKN---------------VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428 (475)
Q Consensus 365 d~~~~~~~~~~-~~~~~v~~l~~s~~---------------~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 428 (475)
-+.++++...+ .|...|-+++|.|. +.++++ ++.|+.|++||+.++.++.++.+|...|..+
T Consensus 263 ~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s--~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~ 340 (406)
T KOG0295|consen 263 VVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS--GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGV 340 (406)
T ss_pred EeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEe--ecccceEEEEeccCCeEEEEEecccceeeee
Confidence 99999887776 47788899998763 235666 8899999999999999999999999999999
Q ss_pred EECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 429 ATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 429 ~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
+|+|.|+||++++.|++|++||+....+..+.. +.+-+.+++
T Consensus 341 af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 341 AFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLD 383 (406)
T ss_pred EEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEe
Confidence 999999999999999999999999999888754 333444443
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=251.24 Aligned_cols=280 Identities=21% Similarity=0.375 Sum_probs=245.5
Q ss_pred CCCceeEEecCCCC--EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQN--VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~~--~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+--+|.|++..|.+ +++++.|+++.|||+.++++...+. +|-..|..+++++...||++++.|+.|+.||++..+.+
T Consensus 150 HlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvI 228 (460)
T KOG0285|consen 150 HLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVI 228 (460)
T ss_pred ccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhhhhH
Confidence 45689999999864 5555669999999999999888776 89999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 245 RTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
+.+.||-..|.|++.++ +.|++|++|.++++||++ ....+..+.+|...|..+.+.|-...+++|+.|++|++||++
T Consensus 229 R~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiR-tr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~ 307 (460)
T KOG0285|consen 229 RHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIR-TRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLR 307 (460)
T ss_pred HHhccccceeEEEeccccceeEEecCCcceEEEeeec-ccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeec
Confidence 99999999999999985 899999999999999999 677889999999999999999988899999999999999999
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
.++...++..|...|.+++.+|... ++++++ ...|+-|++..|..+..+. +..-+.++..+.|+ ++++ |.++
T Consensus 308 agkt~~tlt~hkksvral~lhP~e~-~fASas---~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~--G~dn 380 (460)
T KOG0285|consen 308 AGKTMITLTHHKKSVRALCLHPKEN-LFASAS---PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVS--GGDN 380 (460)
T ss_pred cCceeEeeecccceeeEEecCCchh-hhhccC---CccceeccCCccchhhccccccceeeeeeeccCc-eEEE--cCCc
Confidence 9999999999999999999999876 666654 5679999999999888764 55667888887776 4455 8899
Q ss_pred CeEEEEECCCCceEEEec-----C---CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 402 NQIMVWKYPSMAKVSTLT-----G---HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 402 g~I~iwd~~~~~~~~~l~-----~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
|.|.+||.+++...+.++ | .+..|++.+|...|..|+||..|.+|++|.-+...
T Consensus 381 g~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~a 442 (460)
T KOG0285|consen 381 GSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHA 442 (460)
T ss_pred eEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccccc
Confidence 999999999886554442 1 34568999999999999999999999999876543
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=278.91 Aligned_cols=278 Identities=24% Similarity=0.449 Sum_probs=243.1
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCCc--EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCe
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSK--VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG-TQCK 242 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~--~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~-~~~~ 242 (475)
..-+.++.++++ .+++++.++.+++|+..+.+ ..... .+|...|.+++|+|+|+++++|+.|++|+|||+ ..+.
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 345777888886 45555679999999997776 44444 389999999999999999999999999999999 5668
Q ss_pred eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 243 RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
.++++.+|...|++++|+ ++++++|+.|++|+|||++ .+.+...+.+|.+.|.+++|++++++|++++.|+.|+|||
T Consensus 238 ~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~-~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 238 NLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR-TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD 316 (456)
T ss_pred EEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc-CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence 999999999999999995 5899999999999999999 5889999999999999999999999999999999999999
Q ss_pred CCCCc--eeEEEeccccc--eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CC---CeeEEEEcCCCCe
Q 011916 321 QHSQQ--PTLRLTEHTAA--VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GS---QVCNLAWSKNVNE 392 (475)
Q Consensus 321 ~~~~~--~~~~~~~h~~~--v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~~---~v~~l~~s~~~~~ 392 (475)
+.++. ++..+..+... +..+.|+|++.++++.. .|+.+++||+..+.++..+.. .. .+.+...++.+.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~---~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 317 LETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS---LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred CCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec---CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 99998 55667666555 99999999999887744 799999999999988887743 22 3344455788899
Q ss_pred EEEEEecCCCeEEEEECCCCceEEEecCC-CcceEEEEECCCCCEEEEEe--CCCCEEEEecC
Q 011916 393 LVSTHGYSQNQIMVWKYPSMAKVSTLTGH-SLRVLYLATSPDGQTIVTGA--GDETLRFWNVF 452 (475)
Q Consensus 393 l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~s--~Dg~I~iW~~~ 452 (475)
+++ |+.|+.|++|++.++..+..+.+| ...+..+.+++...++++++ .|+.|++|...
T Consensus 394 i~s--g~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 394 IYS--GSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEE--EeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 998 999999999999999999999999 89999999999999999998 79999999864
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=277.98 Aligned_cols=266 Identities=20% Similarity=0.362 Sum_probs=226.6
Q ss_pred CceeEEecCCC-CEEEEEc-CCeEEEEECCCCcE------------------------------EEEeeCCCCCcEEEEE
Q 011916 169 FYLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKV------------------------------TRLCDLGPGDSVCSVQ 216 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~------------------------------~~~~~~~~~~~V~~v~ 216 (475)
.-++|..++++ .++|+|. |..|++|.+...++ ......+|.++|..+.
T Consensus 379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~s 458 (707)
T KOG0263|consen 379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCS 458 (707)
T ss_pred CcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeee
Confidence 34789999987 5777766 88999999873110 0111238999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCC
Q 011916 217 WTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSE 294 (475)
Q Consensus 217 ~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 294 (475)
|+|+.++|++++.|++|++|.+.+..++..++||..+|+.+.|+ |.++++++.|++-++|... .....+.+.+|...
T Consensus 459 FsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d-~~~PlRifaghlsD 537 (707)
T KOG0263|consen 459 FSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD-HNKPLRIFAGHLSD 537 (707)
T ss_pred ecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc-cCCchhhhcccccc
Confidence 99999999999999999999999999999999999999999996 6899999999999999998 57788899999999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
|.|+.|+|+..++|+|+.|.+|++||..+|..+..|.+|.++|.+++|+|+|++| ++| ..|+.|.+||+.++..+..
T Consensus 538 V~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~L-aSg--~ed~~I~iWDl~~~~~v~~ 614 (707)
T KOG0263|consen 538 VDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYL-ASG--DEDGLIKIWDLANGSLVKQ 614 (707)
T ss_pred cceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceE-eec--ccCCcEEEEEcCCCcchhh
Confidence 9999999999999999999999999999999999999999999999999999955 454 4999999999999998887
Q ss_pred e-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------------------------eEEEecCCCcceEEEE
Q 011916 375 V-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA------------------------KVSTLTGHSLRVLYLA 429 (475)
Q Consensus 375 ~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------------------------~~~~l~~h~~~V~~l~ 429 (475)
+ .|.+.|+++.|+.+|..|++ |+.|++|++||+.... .+..+.....+|.++.
T Consensus 615 l~~Ht~ti~SlsFS~dg~vLas--gg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~ 692 (707)
T KOG0263|consen 615 LKGHTGTIYSLSFSRDGNVLAS--GGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLH 692 (707)
T ss_pred hhcccCceeEEEEecCCCEEEe--cCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEE
Confidence 6 57788999999999999999 8899999999985321 2334444455677777
Q ss_pred ECCCCCEEEEE
Q 011916 430 TSPDGQTIVTG 440 (475)
Q Consensus 430 ~spdg~~l~s~ 440 (475)
|..-.-.|++|
T Consensus 693 FtrrNl~L~~g 703 (707)
T KOG0263|consen 693 FTRRNLLLAVG 703 (707)
T ss_pred EeccceeEEec
Confidence 76655444443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=253.32 Aligned_cols=285 Identities=18% Similarity=0.280 Sum_probs=238.7
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeC--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDL--GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~--~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
+.-+|+|+.++|+ .+++++.|+.|++||-.+++.+..+.- .|.+.|.+++|+||++.|++++.|.+++|||+.+.+
T Consensus 189 HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 189 HSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNS 268 (603)
T ss_pred cccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccc
Confidence 3457999999997 578888999999999999998877752 689999999999999999999999999999999999
Q ss_pred eeEEecCCC---CceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011916 243 RVRTFGGHQ---TRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 243 ~~~~~~~h~---~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iw 319 (475)
+++++.... ..-..+-|..+.|++.+.+|+|..++... ......+.+|...|+++..++++.+|++|+.||.|.-|
T Consensus 269 lv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d-~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 269 LVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSD-PSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred eEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccC-CChhheecccccceeEEEEcCCCCEEEeeccCceEEEE
Confidence 999887432 23344556788999999999999999984 44889999999999999999999999999999999999
Q ss_pred ECCCCcee------------------------------------------------------------------------
Q 011916 320 NQHSQQPT------------------------------------------------------------------------ 327 (475)
Q Consensus 320 d~~~~~~~------------------------------------------------------------------------ 327 (475)
|..++..-
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred ecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCc
Confidence 97643200
Q ss_pred -EEEec--------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce---eeeecCCCCeeEEEEcCCCCeEEE
Q 011916 328 -LRLTE--------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 328 -~~~~~--------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~---~~~~~~~~~v~~l~~s~~~~~l~~ 395 (475)
..+.. -.....+++++|++. .++.|+ .|++|++|.+..+.. ...+++.+.++.++++|++.+|++
T Consensus 428 iv~l~~~~~~~~~~~~y~~s~vAv~~~~~-~vaVGG--~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~ 504 (603)
T KOG0318|consen 428 IVLLQDQTKVSSIPIGYESSAVAVSPDGS-EVAVGG--QDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAA 504 (603)
T ss_pred EEEEecCCcceeeccccccceEEEcCCCC-EEEEec--ccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEE
Confidence 00000 112346788889888 556665 999999999987653 345678999999999999999999
Q ss_pred EEecCCCeEEEEECCCCceEE-EecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 396 THGYSQNQIMVWKYPSMAKVS-TLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+...+.+.+||..+.+... .+.-|+.+|.+|+|+|+..++|||+-|-.|.||++....+.
T Consensus 505 --~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~ 565 (603)
T KOG0318|consen 505 --GDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH 565 (603)
T ss_pred --eccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence 8899999999998877633 33349999999999999999999999999999999977665
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=265.07 Aligned_cols=280 Identities=22% Similarity=0.418 Sum_probs=244.5
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECC------------------------CCc-----E---E-EEeeCCCCCcEEE
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTAS------------------------NSK-----V---T-RLCDLGPGDSVCS 214 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~------------------------~~~-----~---~-~~~~~~~~~~V~~ 214 (475)
+|...-|..+ .+++++.||.+.+|... ..+ . . +.+-......|++
T Consensus 191 ~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvta 270 (893)
T KOG0291|consen 191 YVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTA 270 (893)
T ss_pred ceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceee
Confidence 4444555554 69999999999999876 111 0 0 1111123378999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCC-CcEEEEECCCCCccEEEecCc
Q 011916 215 VQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRD-RNILQHDLRVSSDYICKLAGH 291 (475)
Q Consensus 215 v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d-g~I~iwd~~~~~~~~~~~~~h 291 (475)
.+|++.-+.||+|-.+|...+|++....+++.+.-....|..++|| |+.|+.|+.. |.+.||+.. ....+.+.++|
T Consensus 271 a~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWq-sEsYVlKQQgH 349 (893)
T KOG0291|consen 271 AAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQ-SESYVLKQQGH 349 (893)
T ss_pred eeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEee-ccceeeecccc
Confidence 9999999999999999999999999999999999888999999998 8999998755 899999998 67788889999
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ 371 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~ 371 (475)
...+.+++++|||+++|+|+.||+|+|||...+-+..+|..|.+.|+++.|+..|+.+++++ .||+|+.||+...++
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS---LDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS---LDGTVRAWDLKRYRN 426 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee---cCCeEEeeeecccce
Confidence 99999999999999999999999999999999999999999999999999999999766654 799999999999999
Q ss_pred eeeecCC--CCeeEEEEcCCCCeEEEEEecCCC-eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEE
Q 011916 372 LNSVDTG--SQVCNLAWSKNVNELVSTHGYSQN-QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF 448 (475)
Q Consensus 372 ~~~~~~~--~~v~~l~~s~~~~~l~~~~g~~dg-~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 448 (475)
.+++... .+..+++..|.|..+++ |..|. .|++|++.+|+.+-.+.||+++|.+++|+|+|..|++++.|.+||+
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~A--G~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCA--GAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEe--eccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEE
Confidence 9998655 45778888888888777 65554 7999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 011916 449 WNVFPSL 455 (475)
Q Consensus 449 W~~~~~~ 455 (475)
||++...
T Consensus 505 W~if~s~ 511 (893)
T KOG0291|consen 505 WDIFSSS 511 (893)
T ss_pred EEeeccC
Confidence 9999774
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=251.94 Aligned_cols=246 Identities=23% Similarity=0.378 Sum_probs=226.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|.+.|.||++.|.+.+|++|+.|++++|||+.++++..++.||...|..++++. .++++++.|+.|+.||++ ..+.
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe-~nkv 227 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLE-YNKV 227 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEech-hhhh
Confidence 8999999999999999999999999999999999999999999999999999975 799999999999999998 6788
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
++.+.+|-..|.+++.+|.-..|++|+.|.+++|||+++...+..+.+|...|..+.+.|....++. |+.|++|++|
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit---~S~D~tvrlW 304 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVIT---GSHDSTVRLW 304 (460)
T ss_pred HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEE---ecCCceEEEe
Confidence 8999999999999999999999999999999999999999999999999999999999998886766 3489999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
|++.|+....+. +...+.+++.+|....+++ ++ ...|+-|+++.+..+..+.+|..-|+.|+...|| ++++|+..
T Consensus 305 Dl~agkt~~tlt~hkksvral~lhP~e~~fAS--as-~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~-v~~~G~dn 380 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHKKSVRALCLHPKENLFAS--AS-PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDG-VLVSGGDN 380 (460)
T ss_pred eeccCceeEeeecccceeeEEecCCchhhhhc--cC-CccceeccCCccchhhccccccceeeeeeeccCc-eEEEcCCc
Confidence 999998877764 5678999999999988887 43 4569999999999999999999999999999887 78899999
Q ss_pred CCEEEEecCCCCCCCCc
Q 011916 444 ETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 444 g~I~iW~~~~~~~~~~~ 460 (475)
|.|.+||...+...+..
T Consensus 381 g~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 381 GSIMFWDWKSGHNYQRG 397 (460)
T ss_pred eEEEEEecCcCcccccc
Confidence 99999999988776653
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=236.34 Aligned_cols=257 Identities=17% Similarity=0.342 Sum_probs=229.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCC--C
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVS--S 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~--~ 282 (475)
+|.+.|.++.|++|.++|++++.||.+.|||..+...++.+.-....|..++| +++++++|+.|....||++... .
T Consensus 53 GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~ 132 (343)
T KOG0286|consen 53 GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE 132 (343)
T ss_pred ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc
Confidence 89999999999999999999999999999999999999999989999999999 5799999999999999999844 1
Q ss_pred ---ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 283 ---DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 283 ---~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
...+.+.+|.+.+.++.|-. ..+|++++.|.++.+||+++++.+..|.+|.+.|.+++++|.....+++|+ .|+
T Consensus 133 g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~--cD~ 209 (343)
T KOG0286|consen 133 GNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG--CDK 209 (343)
T ss_pred ccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecc--ccc
Confidence 34566899999999999987 558899999999999999999999999999999999999994444777765 899
Q ss_pred eEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCE
Q 011916 360 CIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQT 436 (475)
Q Consensus 360 ~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~ 436 (475)
..++||++.+.+++.+. |.+.|.++.|.|+|.-+++ |++|+..++||++..+.+..+.. -...|++++||..|++
T Consensus 210 ~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afat--GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRl 287 (343)
T KOG0286|consen 210 SAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFAT--GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRL 287 (343)
T ss_pred ceeeeeccCcceeEeecccccccceEEEccCCCeeee--cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccE
Confidence 99999999999999985 7789999999999999999 99999999999999999888863 3467999999999999
Q ss_pred EEEEeCCCCEEEEecCCCCCCCCcc-cCCcccc
Q 011916 437 IVTGAGDETLRFWNVFPSLKAPALV-KDTSLWS 468 (475)
Q Consensus 437 l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s 468 (475)
|++|..|.++.+||.-.++....+. |+..|..
T Consensus 288 Lfagy~d~~c~vWDtlk~e~vg~L~GHeNRvSc 320 (343)
T KOG0286|consen 288 LFAGYDDFTCNVWDTLKGERVGVLAGHENRVSC 320 (343)
T ss_pred EEeeecCCceeEeeccccceEEEeeccCCeeEE
Confidence 9999999999999998888776654 3444433
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=235.99 Aligned_cols=245 Identities=19% Similarity=0.319 Sum_probs=214.0
Q ss_pred CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC-----CCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEEC
Q 011916 207 GPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGT-----QCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDL 278 (475)
Q Consensus 207 ~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~-----~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~ 278 (475)
+|.+.|+.++..+. ...|+.++.|.++.+|++. .|..++.+.||...|..+.. ++++.++++.|+++++||+
T Consensus 13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 89999999999886 5788999999999999875 46778999999999998877 6899999999999999999
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc--ccceeEEEECCCC-CcEEEEecC
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH--TAAVKAIAWSPHQ-SSLLASGGG 355 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h--~~~v~~l~~sp~~-~~ll~sg~G 355 (475)
. .++..+.+.+|...|.+++|++|.+++++|+.|.+|++|+..... ..++..+ .+.|.++.|+|.. .-++++++
T Consensus 93 ~-~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c-k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s- 169 (315)
T KOG0279|consen 93 A-TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC-KYTIHEDSHREWVSCVRFSPNESNPIIVSAS- 169 (315)
T ss_pred c-CCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE-EEEEecCCCcCcEEEEEEcCCCCCcEEEEcc-
Confidence 9 558889999999999999999999999999999999999987654 3444433 7899999999985 44666655
Q ss_pred CCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC
Q 011916 356 TADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 434 (475)
.|+++++||+++.+....+ .+.+.++.++++|||..+++ |..||.+.+||+..++.+..+. |...|.+++|+|+.
T Consensus 170 -~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcas--Ggkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 170 -WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCAS--GGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNR 245 (315)
T ss_pred -CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEec--CCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCc
Confidence 9999999999998887776 57788999999999999999 9999999999999999987775 88899999999998
Q ss_pred CEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 435 QTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
..|+.+ .+..|+|||+.++.....
T Consensus 246 ywL~~a-t~~sIkIwdl~~~~~v~~ 269 (315)
T KOG0279|consen 246 YWLCAA-TATSIKIWDLESKAVVEE 269 (315)
T ss_pred eeEeec-cCCceEEEeccchhhhhh
Confidence 766655 456699999998876554
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=232.07 Aligned_cols=258 Identities=20% Similarity=0.312 Sum_probs=221.0
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcE--EEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKV--TRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~--~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
.|..||.+...|+ ..||++....|++||+.++.. +..++ +|...|++|.|..+|+++++|++||+++|||+....+
T Consensus 39 ~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e-~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~ 117 (311)
T KOG0315|consen 39 PDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFE-GHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSC 117 (311)
T ss_pred CccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEe-ccCCceEEEEEeecCeEEEecCCCceEEEEeccCccc
Confidence 4556899999997 789999999999999998875 34444 7889999999999999999999999999999998666
Q ss_pred eEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 244 VRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
.+.++ |..+|.++..++ ..|++|..+|.|++||+.........+......|.++...|||.+|+.+.+.|.+++|++
T Consensus 118 qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 118 QRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred chhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 66665 669999999964 689999999999999998554444445556678999999999999999999999999998
Q ss_pred CCC------ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeee-cCCCCeeEEEEcCCCCeE
Q 011916 322 HSQ------QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQLNSV-DTGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 322 ~~~------~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~-~~~~~v~~l~~s~~~~~l 393 (475)
-.. +++.++..|.+.+....++|++++|++++ .|.+++||++.+. +....+ .+...+..++||.+|.||
T Consensus 197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s---sdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~Yl 273 (311)
T KOG0315|consen 197 LNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS---SDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYL 273 (311)
T ss_pred cCCCccccceEhhheecccceEEEEEECCCCcEEEeec---CCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEE
Confidence 653 46678889999999999999999777765 6999999999987 322333 355689999999999999
Q ss_pred EEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEEC
Q 011916 394 VSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATS 431 (475)
Q Consensus 394 ~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 431 (475)
++ |++|+.+++|++..++.+....+|.....|++..
T Consensus 274 vT--assd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 274 VT--ASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred Ee--cCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 99 8899999999999999999999999888887764
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-31 Score=270.04 Aligned_cols=252 Identities=25% Similarity=0.420 Sum_probs=225.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
.+...|.++.|+++|++|++++.++.+++|+..+.+ ..+.+.+|...|..++| ++.++++++.|++|+|||+...+
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~ 236 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDG 236 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCC
Confidence 346889999999999999999999999999998777 77778899999999999 57899999999999999997677
Q ss_pred ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 283 DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
..++.+.+|...|++++|+|+++++++|+.|++|+|||+++++++..+.+|...|.+++|++++..|++. + .|+.|+
T Consensus 237 ~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~-s--~d~~i~ 313 (456)
T KOG0266|consen 237 RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSA-S--YDGTIR 313 (456)
T ss_pred eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEc-C--CCccEE
Confidence 8899999999999999999999999999999999999999999999999999999999999999966553 3 799999
Q ss_pred EEECCCCc--eeeeec-CC-C-CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc---eEEEEECCCC
Q 011916 363 FWNTSNGH--QLNSVD-TG-S-QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR---VLYLATSPDG 434 (475)
Q Consensus 363 iwd~~~~~--~~~~~~-~~-~-~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~---V~~l~~spdg 434 (475)
+||+.++. ++..+. .. . .+..+.|+|++.++++ +..|+.+++||+..+..+..+.+|... +.+...++.+
T Consensus 314 vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~--~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 314 VWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS--ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE--ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 99999999 445553 22 2 6899999999999999 889999999999999999999998875 3444567899
Q ss_pred CEEEEEeCCCCEEEEecCCCCCCCCcccC
Q 011916 435 QTIVTGAGDETLRFWNVFPSLKAPALVKD 463 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~ 463 (475)
.++++|+.|+.|++|++.++.....+..+
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 99999999999999999987777766554
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-30 Score=281.94 Aligned_cols=277 Identities=16% Similarity=0.308 Sum_probs=225.3
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCC----cE--EEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNS----KV--TRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWD 237 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~----~~--~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd 237 (475)
+...|.+++|+++ . +++++.|+.|+||+.... .. .....+.+...|.+++|++ ++.+||+++.||+|+|||
T Consensus 482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 4667999999986 4 566677999999997542 11 0112223456899999987 578999999999999999
Q ss_pred CCCCeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEc-CCCCEEEEEeCC
Q 011916 238 GTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS-HDDRELASGGND 313 (475)
Q Consensus 238 ~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-~~~~~lasg~~D 313 (475)
+.+++.+..+.+|...|.+++|+ +.+|++|+.||+|++||++ .+..+..+..+ ..|+++.|+ +++.+|++|+.|
T Consensus 562 ~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~-~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 562 VARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN-QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred CCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC-CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCC
Confidence 99999999999999999999995 4799999999999999998 45556666544 679999995 579999999999
Q ss_pred CcEEEEECCCCc-eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC------ceeeeec-CCCCeeEEE
Q 011916 314 NQLLVWNQHSQQ-PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG------HQLNSVD-TGSQVCNLA 385 (475)
Q Consensus 314 g~I~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~------~~~~~~~-~~~~v~~l~ 385 (475)
|.|++||++..+ ++..+.+|...|.++.|. ++..++ +++ .|+.|++||+..+ .++..+. +...+..+.
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lv-s~s--~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~ 715 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLV-SSS--TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG 715 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEE-EEE--CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence 999999998765 567788899999999997 555444 444 7999999999753 4555554 566788999
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEEe-------------cCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL-------------TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l-------------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
|++++.+|++ |+.|+.|++|+......+..+ ..|...|.+++|++++..|++|+.||.|+||++
T Consensus 716 ~s~~~~~las--gs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 716 LSVSDGYIAT--GSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCEEEE--EeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999999988 889999999998655433221 235567999999999999999999999999997
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=264.11 Aligned_cols=275 Identities=23% Similarity=0.335 Sum_probs=238.0
Q ss_pred EecCCC-CEEEE-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeeEEe
Q 011916 174 VDWSSQ-NVLAV-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC----KRVRTF 247 (475)
Q Consensus 174 l~ws~~-~~la~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~----~~~~~~ 247 (475)
--|.|+ +.+++ +..+.+++|+..+.... ++. +|.+.|.++....+|.+|++|+.|.++++|.++++ -++...
T Consensus 330 ~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~-GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~ 407 (775)
T KOG0319|consen 330 KFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIP-GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA 407 (775)
T ss_pred eecCCccceEEEEeCCCceEEEecCCCceE-EEe-CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhh
Confidence 334553 45555 55789999998887766 333 99999999996667899999999999999987443 344556
Q ss_pred cCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCC--c--cEE----EecCccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 248 GGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSS--D--YIC----KLAGHKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 248 ~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~--~--~~~----~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
.+|...|.+++.+ ..+|++++.|+++++|++.... . ... ....|...|++++++|+..++|+|+.|.+.
T Consensus 408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta 487 (775)
T KOG0319|consen 408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA 487 (775)
T ss_pred cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce
Confidence 7999999999994 3899999999999999997521 1 111 345799999999999999999999999999
Q ss_pred EEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEE
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~ 395 (475)
+||++.....+.++.+|...|.++.|+|..+ ++++++ .|++|+||.+.++.|+++++ |...|..+.|-.+++.|++
T Consensus 488 KiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq-~laT~S--gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS 564 (775)
T KOG0319|consen 488 KIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQ-LLATCS--GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLIS 564 (775)
T ss_pred eeecccCceEEEEeeCCccceEEEEeccccc-eeEecc--CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEe
Confidence 9999999999999999999999999999988 566655 79999999999999999997 7889999999999999999
Q ss_pred EEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
++.||-|++|++.+.+++.++..|.++|++++.++++..++||+.||.|.+|.=.+..
T Consensus 565 --~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 565 --AGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred --ccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecCcHH
Confidence 8899999999999999999999999999999999999999999999999999755443
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-32 Score=235.65 Aligned_cols=262 Identities=21% Similarity=0.355 Sum_probs=222.9
Q ss_pred cCCeEEEEECC-CCcEEEEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC-CCeeeEEecCCCCceEEEEeC--
Q 011916 186 LGTCVYLWTAS-NSKVTRLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGT-QCKRVRTFGGHQTRAGVLAWN-- 260 (475)
Q Consensus 186 ~~~~V~lw~~~-~~~~~~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~-~~~~~~~~~~h~~~v~~l~~~-- 260 (475)
.+|.++|.++. .+.+.......-.+.+..|+|+++ .+.+++++.||+++|||.. ..+++..++.|...|.++.|+
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccc
Confidence 46899999996 444444554566789999999994 5688899999999999964 346888999999999999996
Q ss_pred -CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEecccccee
Q 011916 261 -SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVK 338 (475)
Q Consensus 261 -~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~ 338 (475)
...+++++.|++|++|+.. ....+.++.+|...|...+|+| ..+.+++++.|+++++||++.......+..|...+.
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~-r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil 194 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPN-RPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEIL 194 (311)
T ss_pred cceeEEeeccCCceEeecCC-CCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeE
Confidence 4788888999999999998 6778889999999999999999 778999999999999999986555555888999999
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceE
Q 011916 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-AKV 415 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~ 415 (475)
++.|+....+++++|+ .|+.|+.||+++-+ ++..+ .|+-.|..+.|+|...-++++ ++-|-+++|||.... ..+
T Consensus 195 ~cdw~ky~~~vl~Tg~--vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaS-asYDmT~riw~~~~~ds~~ 271 (311)
T KOG0277|consen 195 CCDWSKYNHNVLATGG--VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLAS-ASYDMTVRIWDPERQDSAI 271 (311)
T ss_pred eecccccCCcEEEecC--CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhh-ccccceEEecccccchhhh
Confidence 9999999999999987 99999999998754 44444 466789999999988776665 567999999999744 455
Q ss_pred EEecCCCcceEEEEECC-CCCEEEEEeCCCCEEEEec
Q 011916 416 STLTGHSLRVLYLATSP-DGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iW~~ 451 (475)
.+...|+.-|..+.||+ ++.++|+++.|+.++||+-
T Consensus 272 e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 272 ETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 66677999999999998 6789999999999999983
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=238.49 Aligned_cols=279 Identities=18% Similarity=0.315 Sum_probs=253.6
Q ss_pred ceeEEecCC---C--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 170 YLNLVDWSS---Q--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 170 ~v~~l~ws~---~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
.|..++||+ + -+++++.|+.-.|-+-++|..+..+. +|.+.|.+..++.+....|+++.|=+-+|||.-++..+
T Consensus 16 pvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdel 94 (334)
T KOG0278|consen 16 PVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDEL 94 (334)
T ss_pred ceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhh
Confidence 455678875 3 35666779999999999999999997 99999999999999889999999999999999999999
Q ss_pred EEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 245 RTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
..|. |..-|.+++|+ .++|++|+.++.++|+|+.....+...+.+|.+.|..+.|....+.+++...|++|++||.+
T Consensus 95 hsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 95 HSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHR 173 (334)
T ss_pred hhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEec
Confidence 8885 88899999994 68999999999999999998888888999999999999999999999999999999999999
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
++..++.+. ....|+++..+++|++|..+ ..+.|.+||..+...++.++....|.+..++|+...+++ |..|.
T Consensus 174 Tgt~v~sL~-~~s~VtSlEvs~dG~ilTia----~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVa--Gged~ 246 (334)
T KOG0278|consen 174 TGTEVQSLE-FNSPVTSLEVSQDGRILTIA----YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVA--GGEDF 246 (334)
T ss_pred cCcEEEEEe-cCCCCcceeeccCCCEEEEe----cCceeEEeccccccceeeccCccccccccccCCCceEEe--cCcce
Confidence 999998875 57789999999999955554 568999999999999999999999999999999988877 99999
Q ss_pred eEEEEECCCCceEEEe-cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 403 QIMVWKYPSMAKVSTL-TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
.++.||+.+++.+..+ ++|.++|.|+.|+|||...++|++||+|++|.+.++...
T Consensus 247 ~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 247 KVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999886 899999999999999999999999999999999877655
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=259.47 Aligned_cols=274 Identities=18% Similarity=0.361 Sum_probs=234.7
Q ss_pred CceeEEecCCC---CEEEEEcCCeEEEEECCC-CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 169 FYLNLVDWSSQ---NVLAVGLGTCVYLWTASN-SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 169 ~~v~~l~ws~~---~~la~~~~~~V~lw~~~~-~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
--|+++.|.|. -+|+++.|+.|+||++-+ +.+++.+. +|..+|.+++|+++|..+++++.|+.|++||+++|+++
T Consensus 215 kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~ 293 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL 293 (503)
T ss_pred cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeeeeeccccceEE
Confidence 34888999983 367777799999999987 67777765 99999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 245 RTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
..|. ....++|+.|+ .+.+++|+.|+.|+.||++ .++.++.+..|-+.|..+.|-++|+.+++.+.|+.++||+.
T Consensus 294 ~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR-s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 294 SRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR-SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWEN 371 (503)
T ss_pred EEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEecc-chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEc
Confidence 9885 23456788884 3899999999999999999 67788888999999999999999999999999999999999
Q ss_pred CCCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee---e---cCCCCeeEEEEcCCCCeEE
Q 011916 322 HSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS---V---DTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 322 ~~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~---~---~~~~~v~~l~~s~~~~~l~ 394 (475)
+...++..... +.....++..+|.+.++++ -+.|+.|.+|.+...-.+.. + ...+.-+.+.|||||.+|+
T Consensus 372 ~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a---Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 372 RIPVPIKNIADPEMHTMPCLTLHPNGKWFAA---QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC 448 (503)
T ss_pred CCCccchhhcchhhccCcceecCCCCCeehh---hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence 98876654332 3445678999999997666 34899999999754322221 1 2346678999999999999
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC-CCEEEEEeCCCCEEEEe
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD-GQTIVTGAGDETLRFWN 450 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iW~ 450 (475)
+ |..+|.+.+||..+-+.+..++.|++.+..+.|+|. ...+|||+.||.|++|+
T Consensus 449 S--GdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 449 S--GDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred e--ecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9 999999999999999999999999999999999995 45799999999999996
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-31 Score=255.09 Aligned_cols=294 Identities=18% Similarity=0.302 Sum_probs=256.1
Q ss_pred ceeEEecCCCC--EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 170 YLNLVDWSSQN--VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 170 ~v~~l~ws~~~--~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
.|.+++++|.. ++++--+|.|.|||.++...++.++. ..-+|.+..|-+..+++++|+.|..|+||+..+++.++.|
T Consensus 15 RVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~F 93 (794)
T KOG0276|consen 15 RVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTF 93 (794)
T ss_pred ceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-cccchhhheeeeccceEEEecCCceEEEEecccceeeEEe
Confidence 47789999973 56666699999999999999998874 4678999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 011916 248 GGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 248 ~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
..|..-|.+++.++ .++++++.|-+|++||.+....+.+.+.+|...|.+++|+| |.+.+|+++-|++|+||.+...
T Consensus 94 eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 94 EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred eccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 99999999999987 69999999999999999988889999999999999999999 7789999999999999999999
Q ss_pred ceeEEEeccccceeEEEECCCC-CcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 325 QPTLRLTEHTAAVKAIAWSPHQ-SSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 325 ~~~~~~~~h~~~v~~l~~sp~~-~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
.+..++.+|...|+++.+-+.| +-.+++| ..|.+|+|||.++..|+.+++ |...|..+.|+|.-..+++ |++||
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsg--aDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiis--gsEDG 249 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISG--ADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIIS--GSEDG 249 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEec--CCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEE--ecCCc
Confidence 9999999999999999998765 2244554 489999999999999999997 6788999999999999999 99999
Q ss_pred eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccCC-ccccc
Q 011916 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDT-SLWSL 469 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~-~v~s~ 469 (475)
+++||+..+.+...++.-.-++|++++-.+.+..++.|...|.| +.++-...+.-.+...+ -+|+.
T Consensus 250 TvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i-~v~lgreeP~vsMd~~gKIiwa~ 316 (794)
T KOG0276|consen 250 TVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSV-TVKLGREEPAVSMDSNGKIIWAV 316 (794)
T ss_pred cEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcE-EEEccCCCCceeecCCccEEEEc
Confidence 99999999998888888788899999999988888888666654 45555554444433333 34544
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-31 Score=229.12 Aligned_cols=249 Identities=18% Similarity=0.320 Sum_probs=223.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
.+.+.|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|..++. ++..|++|+.|+.+.+||+. .++.
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~-TGkv 93 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVN-TGKV 93 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcc-cCee
Confidence 67899999999999999999999999999999999999999999999988776 67899999999999999999 7889
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS--QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~--~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
.+++.+|.++|..++|+.+...+++|+.|.++++||.++ .++++.+......|.+|....+ .+++| +.||+++
T Consensus 94 ~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~h---eIvaG--S~DGtvR 168 (307)
T KOG0316|consen 94 DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEH---EIVAG--SVDGTVR 168 (307)
T ss_pred eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEeccc---EEEee--ccCCcEE
Confidence 999999999999999999999999999999999999985 4688899888999999999755 45554 4999999
Q ss_pred EEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcce--EEEEECCCCCEEEEE
Q 011916 363 FWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV--LYLATSPDGQTIVTG 440 (475)
Q Consensus 363 iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V--~~l~~spdg~~l~s~ 440 (475)
.||++.|...... .+.+|+++.|+++++..++ +..++.|++.|-.+++.+..+++|...- ...+++.....+++|
T Consensus 169 tydiR~G~l~sDy-~g~pit~vs~s~d~nc~La--~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sg 245 (307)
T KOG0316|consen 169 TYDIRKGTLSSDY-FGHPITSVSFSKDGNCSLA--SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSG 245 (307)
T ss_pred EEEeecceeehhh-cCCcceeEEecCCCCEEEE--eeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEec
Confidence 9999999765544 6789999999999999999 8899999999999999999999998764 445677778899999
Q ss_pred eCCCCEEEEecCCCCCCCCcccCC
Q 011916 441 AGDETLRFWNVFPSLKAPALVKDT 464 (475)
Q Consensus 441 s~Dg~I~iW~~~~~~~~~~~~~~~ 464 (475)
++||.|++||+........+....
T Consensus 246 SEDG~Vy~wdLvd~~~~sk~~~~~ 269 (307)
T KOG0316|consen 246 SEDGKVYFWDLVDETQISKLSVVS 269 (307)
T ss_pred cCCceEEEEEeccceeeeeeccCC
Confidence 999999999999888766654443
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-31 Score=260.09 Aligned_cols=290 Identities=19% Similarity=0.377 Sum_probs=252.9
Q ss_pred CCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEE-cCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceE
Q 011916 177 SSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQW-TREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAG 255 (475)
Q Consensus 177 s~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~-spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~ 255 (475)
+...++++..+..+.++|.++.++.+.+- +..+.|.+++| .|+.++||++++.+.+++|+..+..+. .+.||...|.
T Consensus 292 ~~~~~l~vtaeQnl~l~d~~~l~i~k~iv-G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vl 369 (775)
T KOG0319|consen 292 SMSQLLLVTAEQNLFLYDEDELTIVKQIV-GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVL 369 (775)
T ss_pred ccCceEEEEccceEEEEEccccEEehhhc-CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhhee
Confidence 34579999999999999999999888775 78899999997 457799999999999999998887766 7889999999
Q ss_pred EEE-e-CCCEEEEEeCCCcEEEEECCCCC---ccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce---
Q 011916 256 VLA-W-NSRILSSGSRDRNILQHDLRVSS---DYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQP--- 326 (475)
Q Consensus 256 ~l~-~-~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~--- 326 (475)
++. | +|.+|++|+.|.++++|.+.... .++....+|...|.+++++..+ .+|++++.|.++++|++...+.
T Consensus 370 SL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 370 SLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred eeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 999 5 46799999999999999884222 3456678999999999998744 4899999999999999986321
Q ss_pred --eE----EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEec
Q 011916 327 --TL----RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 327 --~~----~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
+. ....|...|++++.+|+.+ |+++|+ .|++.+||++.....+..+. |...|.++.|++..+.+++ ++
T Consensus 450 ~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT--~S 524 (775)
T KOG0319|consen 450 PIVLTCRYTERAHDKDINCVAIAPNDK-LIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLAT--CS 524 (775)
T ss_pred cceehhhHHHHhhcccccceEecCCCc-eEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEe--cc
Confidence 11 2345999999999999988 888876 99999999999888888884 6788999999999999999 77
Q ss_pred CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc-ccCCccccccCcc
Q 011916 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL-VKDTSLWSLGRTH 473 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~-~~~~~v~s~~~~~ 473 (475)
.|++|+||.+.+..++.++.||+..|..+.|-.+|+.|++++.||.|++|++.++.+..++ .|...+|++..+.
T Consensus 525 gD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~ 599 (775)
T KOG0319|consen 525 GDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP 599 (775)
T ss_pred CCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC
Confidence 8999999999999999999999999999999999999999999999999999999999987 4667899987654
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=257.73 Aligned_cols=283 Identities=22% Similarity=0.360 Sum_probs=248.2
Q ss_pred cCCCCCCCCceeEEecCCCC-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 161 DAPSLQDDFYLNLVDWSSQN-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 161 ~~p~~~~d~~v~~l~ws~~~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+-++++.| |..+++|.++ +++.+.++.|++|+..+.+.++.+. .+.+.+..|.|.++++++|..+|.+.+||+.
T Consensus 368 ~~~GHR~d--VRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~---~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 368 EIGGHRSD--VRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT---CGYILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred eeccchhh--eeEEEeecCceeeeecCCCcEEEEEccCcceeEEec---cccEEEEEecCCCceEEEeccCCceEEEEee
Confidence 33444444 6778888885 5556668999999999999998885 3489999999999999999999999999999
Q ss_pred CCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC----cc--EE-----EecCccCCEEEEEEcCCCCE
Q 011916 240 QCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS----DY--IC-----KLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~----~~--~~-----~~~~h~~~V~~l~~s~~~~~ 306 (475)
....+.+.+.|.+.++.++. ++..+++|+.|.+|++||..... .. +. ....-...|.|+.+||||++
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 99999999999999999998 57899999999999999975211 11 11 11123467999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEE
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLA 385 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~ 385 (475)
||++--|++|+||-+.+.+....+.+|.-+|.++..+||++ ++++|+ .|+.|++|-+.-|.|.+.+ .|+..|.++.
T Consensus 523 LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSk-livTgS--ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~ 599 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSK-LIVTGS--ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQ 599 (888)
T ss_pred EEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcC-eEEecc--CCCceEEeccccchhhhhhhcccCceeEEE
Confidence 99999999999999999998889999999999999999999 666655 9999999999999998887 6889999999
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
|.|....+++ ++.|+.|+-||-...+.+..+.+|...|++++.+|+|.++++++.|.+|++|.-..
T Consensus 600 F~P~~~~FFt--~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 600 FLPKTHLFFT--CGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred EcccceeEEE--ecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 9998877777 67999999999999999999999999999999999999999999999999999766
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-29 Score=241.45 Aligned_cols=282 Identities=20% Similarity=0.383 Sum_probs=239.2
Q ss_pred CCceeEEecCCCC-EEEEEc-CCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEECCC
Q 011916 168 DFYLNLVDWSSQN-VLAVGL-GTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNL----GQVQVWDGTQ 240 (475)
Q Consensus 168 d~~v~~l~ws~~~-~la~~~-~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~d----g~v~iwd~~~ 240 (475)
...++...+||.. .+|.|. .|.|+|||....+.+...++ ...++|..++|+.|++.|++.++. |.+.+|| +
T Consensus 59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~D--S 136 (603)
T KOG0318|consen 59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWD--S 136 (603)
T ss_pred cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEec--C
Confidence 3457778889874 444444 68999999887554443333 346899999999999988876652 4566665 7
Q ss_pred CeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 241 CKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 241 ~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
+..+..+.+|..+|.++.+. +-.+++|+.|++|.+|+=. +.+....+..|...|.++.|+|||.++|+++.||+|.
T Consensus 137 G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGP-PFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 137 GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGP-PFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY 215 (603)
T ss_pred CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCC-CeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence 88889999999999999994 5689999999999999876 6677778889999999999999999999999999999
Q ss_pred EEECCCCceeEEEe---ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC----CeeEEEEcCCC
Q 011916 318 VWNQHSQQPTLRLT---EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS----QVCNLAWSKNV 390 (475)
Q Consensus 318 iwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~----~v~~l~~s~~~ 390 (475)
+||-.+++.+..+. .|.+.|.+++|+||+..+++++ .|.+++|||+.+.+++.++..+. +...+.|. .
T Consensus 216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S---aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--k 290 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVS---ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--K 290 (603)
T ss_pred EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEec---CCceEEEEEeeccceEEEeecCCchhceEEEEEEe--C
Confidence 99999999999988 7999999999999999888876 69999999999999999986543 45556676 4
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
..|++ -+.+|.|.+++...+..+..+.+|...|+++..++|+++|++|+.||.|.-|+...+.....
T Consensus 291 d~lIt--VSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~ 357 (603)
T KOG0318|consen 291 DHLIT--VSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRL 357 (603)
T ss_pred CeEEE--EEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccccc
Confidence 46666 45789999999999999999999999999999999999999999999999999998876644
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-30 Score=261.47 Aligned_cols=282 Identities=21% Similarity=0.319 Sum_probs=250.6
Q ss_pred CCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 167 DDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 167 ~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
++..+.+..|..+.+++++.++.|.+|+..++..+..--.+|.+.|.++++..-+.+|++|+.|.+++|||..++++...
T Consensus 207 ~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~ 286 (537)
T KOG0274|consen 207 DDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS 286 (537)
T ss_pred CcchhhhheeecCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE
Confidence 34556778888888999999999999999999988883349999999999988788999999999999999999999999
Q ss_pred ecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 247 FGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 247 ~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
+.+|...|.++...+..+++|+.|.+|++|++. .+..+..+.+|...|.++..+ +.++++|+.|++|++||..++++
T Consensus 287 l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~-n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c 363 (537)
T KOG0274|consen 287 LQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVT-NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC 363 (537)
T ss_pred ecCCCceEEEEEccCceEeeccCCceEEEEecc-CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee
Confidence 999999999999999999999999999999998 678888888899999999997 77999999999999999999999
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
+..+.+|..+|.++.+.+. . .+.+|+ .|+.|++||+.+. +++..+.+...+. -.+...++.|++ +..|+.|+
T Consensus 364 l~sl~gH~~~V~sl~~~~~-~-~~~Sgs--~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l~~~~~~Lvs--~~aD~~Ik 436 (537)
T KOG0274|consen 364 LKSLSGHTGRVYSLIVDSE-N-RLLSGS--LDTTIKVWDLRTKRKCIHTLQGHTSLV-SSLLLRDNFLVS--SSADGTIK 436 (537)
T ss_pred eeeecCCcceEEEEEecCc-c-eEEeee--eccceEeecCCchhhhhhhhcCCcccc-cccccccceeEe--ccccccEE
Confidence 9999999999999988775 3 566655 9999999999999 8888887655443 333446778888 88999999
Q ss_pred EEECCCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 406 VWKYPSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 406 iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
+||..+++.+..+.+ |...|..+++. ...+++++.|+++++||+..+.....+
T Consensus 437 ~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999999999999999 77889999886 467888999999999999999887754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-29 Score=238.27 Aligned_cols=248 Identities=29% Similarity=0.497 Sum_probs=220.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|.+.|.+++|+|++++|++++.+|.|.+|++.+++....+..|...+..+.|. ++.|++++.||.|.+||+. ....
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~-~~~~ 85 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE-TGEC 85 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC-cccc
Confidence 688999999999999999999999999999999998888889999999999995 4699999999999999998 4466
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
...+..|...|.++.|+++++++++++.|+.|.+||+.+++....+..|...+.+++|+|++. ++++++ .|+.|++|
T Consensus 86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~~~~i~i~ 162 (289)
T cd00200 86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT-FVASSS--QDGTIKLW 162 (289)
T ss_pred eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC-EEEEEc--CCCcEEEE
Confidence 777888999999999999988999988899999999998888888888999999999999976 555543 69999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
|+.+++.+..+. +...+.++.|+++++.+++ +..++.|++||+..++.+..+..|...|.+++|++++.++++++.|
T Consensus 163 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 240 (289)
T cd00200 163 DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLS--SSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSED 240 (289)
T ss_pred EccccccceeEecCccccceEEECCCcCEEEE--ecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCC
Confidence 999888887775 4458999999999999988 6669999999999999999888899999999999999999988889
Q ss_pred CCEEEEecCCCCCCCCc
Q 011916 444 ETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 444 g~I~iW~~~~~~~~~~~ 460 (475)
|.|++|++..+.....+
T Consensus 241 ~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 241 GTIRVWDLRTGECVQTL 257 (289)
T ss_pred CcEEEEEcCCceeEEEc
Confidence 99999999876554443
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=240.88 Aligned_cols=302 Identities=16% Similarity=0.276 Sum_probs=242.0
Q ss_pred ccCCCCCCCCCcCCCCCceeccCCCCCCCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcE---EEEeeCCCCCcEEE
Q 011916 140 SEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKV---TRLCDLGPGDSVCS 214 (475)
Q Consensus 140 ~~~~~~~~~~r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~---~~~~~~~~~~~V~~ 214 (475)
+.+.+-.+.++.+|....++|.. +.+. |--+.||++ .+++++.|.+..+|.+..... .+.+. +|..+|..
T Consensus 200 sll~Dh~c~~~qip~qt~qil~~--htdE--VWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~y 274 (519)
T KOG0293|consen 200 SLLSDHFCGRLQIPSQTWQILQD--HTDE--VWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSY 274 (519)
T ss_pred hhhhhcccCcccCCchhhhhHhh--CCCc--EEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEE
Confidence 34556667788888888888874 3444 444667665 566666799999999765544 33333 89999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCc
Q 011916 215 VQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGH 291 (475)
Q Consensus 215 v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 291 (475)
+.||||.++|++++.+..+.+||+.+|.+...+. ++...+.+++| ++..+++|+.|++|..||+. +.......+-
T Consensus 275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD--gn~~~~W~gv 352 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD--GNILGNWEGV 352 (519)
T ss_pred EEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC--cchhhccccc
Confidence 9999999999999999999999999999988886 45788999999 57899999999999999997 3333333332
Q ss_pred -cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011916 292 -KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370 (475)
Q Consensus 292 -~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~ 370 (475)
...|.+++..+||+++++.+.|..|++++..+......+. ...+|+++..+.++++.++.- .+..|++||+....
T Consensus 353 r~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL---~~qei~LWDl~e~~ 428 (519)
T KOG0293|consen 353 RDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNL---QDQEIHLWDLEENK 428 (519)
T ss_pred ccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEc---ccCeeEEeecchhh
Confidence 2569999999999999999999999999998765543333 457899999999999777754 79999999999877
Q ss_pred eeeeecCC---CCeeEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC-CCCEEEEEeCCCC
Q 011916 371 QLNSVDTG---SQVCNLAWSKNV-NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-DGQTIVTGAGDET 445 (475)
Q Consensus 371 ~~~~~~~~---~~v~~l~~s~~~-~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~ 445 (475)
.+..+... .-+..-+|--.. ..+++ |++|++|+||+..+++++.++.||...|++++|+| |-.++|+|+.||+
T Consensus 429 lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS--GSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 429 LVRKYFGHKQGHFIIRSCFGGGNDKFIAS--GSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGT 506 (519)
T ss_pred HHHHhhcccccceEEEeccCCCCcceEEe--cCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCe
Confidence 77766432 234445555433 55555 99999999999999999999999999999999999 5568999999999
Q ss_pred EEEEecCCC
Q 011916 446 LRFWNVFPS 454 (475)
Q Consensus 446 I~iW~~~~~ 454 (475)
||||.....
T Consensus 507 IRIWg~~~~ 515 (519)
T KOG0293|consen 507 IRIWGPSDN 515 (519)
T ss_pred EEEecCCcc
Confidence 999998755
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-30 Score=221.30 Aligned_cols=272 Identities=21% Similarity=0.318 Sum_probs=235.2
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
-.|+++.++-+ ..+++|.|.+|+|||...+.+++.+. +|+..|..++.+.|...|++|+.|..|++||+++|+.++.
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr 96 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRR 96 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcccCeeeee
Confidence 45777888864 68999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred ecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCC-CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 247 FGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVS-SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 247 ~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
+.+|.+.|..+.||. ..+++|+.|.++++||-+.. .++++.+......|.++..+ +..++.|+.||+++.||++.
T Consensus 97 ~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~ 174 (307)
T KOG0316|consen 97 FRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRK 174 (307)
T ss_pred cccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeec
Confidence 999999999999974 79999999999999999854 36778888888999999985 66899999999999999999
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CC--CeeEEEEcCCCCeEEEEEecC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GS--QVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~~--~v~~l~~s~~~~~l~~~~g~~ 400 (475)
|...... ...+|+++.|++++...+++. .|++|++.|-.+|+.+..+.. .. .-...+++.....++. |++
T Consensus 175 G~l~sDy--~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~s--gSE 247 (307)
T KOG0316|consen 175 GTLSSDY--FGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFS--GSE 247 (307)
T ss_pred ceeehhh--cCCcceeEEecCCCCEEEEee---ccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEe--ccC
Confidence 9865444 456899999999999888854 899999999999999988753 22 2344566666677777 999
Q ss_pred CCeEEEEECCCCceEEEecCCCcc-eEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 401 QNQIMVWKYPSMAKVSTLTGHSLR-VLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 401 dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
||.|++||+.....+..+..|... |..+.++|.-..|++++. +.+.+|--
T Consensus 248 DG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 248 DGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQ 298 (307)
T ss_pred CceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceeceee
Confidence 999999999999999999988887 899999998888887754 45666643
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-32 Score=246.92 Aligned_cols=235 Identities=24% Similarity=0.439 Sum_probs=207.8
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
....|.|+.+ |...+++|..|.+|+|||..+..++..+.||++.|.|+.++...|++|+.|.+|++||+. .++++.+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~-tge~l~t 272 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVN-TGEPLNT 272 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEecc-CCchhhH
Confidence 4578999987 456799999999999999999999999999999999999999999999999999999999 7888899
Q ss_pred ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP---TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
+.+|...|..+.|+ ..++++++.|.++.+||+..... ...+.+|.++|+.+.|+.. ++++++ .|++|++|
T Consensus 273 lihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsAS--gDRTikvW 345 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSAS--GDRTIKVW 345 (499)
T ss_pred HhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEec--CCceEEEE
Confidence 99999999999996 45999999999999999986543 3456789999999999654 455544 69999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
++.+++.+..+. |...|.|+.+ .++.+++ |++|++|++||+..|.++..++||+.-|.++.| |.+.+++|+.|
T Consensus 346 ~~st~efvRtl~gHkRGIAClQY--r~rlvVS--GSSDntIRlwdi~~G~cLRvLeGHEeLvRciRF--d~krIVSGaYD 419 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRGIACLQY--RDRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD 419 (499)
T ss_pred eccceeeehhhhcccccceehhc--cCeEEEe--cCCCceEEEEeccccHHHHHHhchHHhhhheee--cCceeeecccc
Confidence 999999999985 5667777776 4667777 999999999999999999999999999999999 77899999999
Q ss_pred CCEEEEecCCCCCCC
Q 011916 444 ETLRFWNVFPSLKAP 458 (475)
Q Consensus 444 g~I~iW~~~~~~~~~ 458 (475)
|+|++||+..+....
T Consensus 420 GkikvWdl~aaldpr 434 (499)
T KOG0281|consen 420 GKIKVWDLQAALDPR 434 (499)
T ss_pred ceEEEEecccccCCc
Confidence 999999998876653
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.4e-30 Score=256.27 Aligned_cols=279 Identities=18% Similarity=0.282 Sum_probs=244.6
Q ss_pred ceeEEecCCCC--EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 170 YLNLVDWSSQN--VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 170 ~v~~l~ws~~~--~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
.+..++|+|.. ++++-..|.|.+||..-+.++..++ +|+++|..|+|+|++.++++|+.|-.|+||+..+.+++.++
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL 89 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTL 89 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhh
Confidence 45668999974 6666669999999999998888887 89999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 248 GGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 248 ~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
.||-..|..+.|+. ..|++++.|.+|+||+.. ...++..+.+|...|.|..|+|....+++++-|.+|+|||+...+
T Consensus 90 ~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq-sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLR 168 (1202)
T KOG0292|consen 90 LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ-SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLR 168 (1202)
T ss_pred ccccceeEEeeccCCCceEEEccCCCeEEEEecc-CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchh
Confidence 99999999999975 689999999999999998 788999999999999999999999999999999999999985311
Q ss_pred -----------------------------eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce---ee
Q 011916 326 -----------------------------PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ---LN 373 (475)
Q Consensus 326 -----------------------------~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~---~~ 373 (475)
..+.+.+|...|+-++|+|.-. |+++|+ .|+.|++|.+...+. -.
T Consensus 169 kk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~--DDRqVKlWrmnetKaWEvDt 245 (1202)
T KOG0292|consen 169 KKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGA--DDRQVKLWRMNETKAWEVDT 245 (1202)
T ss_pred ccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecC--CcceeeEEEeccccceeehh
Confidence 1245678999999999999888 777766 999999999765432 22
Q ss_pred eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 374 SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 374 ~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
...|...|.++.|+|..+.+++ .++|+.|+|||+...+.+.++....++.+.++-+|..++++.| .|+-+.+|.+..
T Consensus 246 crgH~nnVssvlfhp~q~lIlS--nsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 246 CRGHYNNVSSVLFHPHQDLILS--NSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLER 322 (1202)
T ss_pred hhcccCCcceEEecCccceeEe--cCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcc
Confidence 3357789999999999999999 7899999999999999999998888999999999999877755 677788898875
Q ss_pred CCC
Q 011916 454 SLK 456 (475)
Q Consensus 454 ~~~ 456 (475)
..+
T Consensus 323 Erp 325 (1202)
T KOG0292|consen 323 ERP 325 (1202)
T ss_pred cCc
Confidence 443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=249.60 Aligned_cols=259 Identities=20% Similarity=0.348 Sum_probs=235.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
.+.+.|.+|.|+|...+++++-.+|.|.||+.++...++.+.-...+|.+..| ..+.+++|+.|..|+||++. ....
T Consensus 11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnyn-t~ek 89 (794)
T KOG0276|consen 11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYN-TGEK 89 (794)
T ss_pred ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecc-ccee
Confidence 46789999999999999999999999999999999999999988889999888 45899999999999999998 6788
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
+..+.+|...|.+|+.+|...++++++.|-+|++||.+. ..+.++|.+|...|.+++|+|....-+++++ -|++|++
T Consensus 90 V~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s--LDrTVKV 167 (794)
T KOG0276|consen 90 VKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS--LDRTVKV 167 (794)
T ss_pred eEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee--ccccEEE
Confidence 999999999999999999999999999999999999985 4678899999999999999999988899876 9999999
Q ss_pred EECCCCceeeeec-CCCCeeEEEEcCCC--CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEE
Q 011916 364 WNTSNGHQLNSVD-TGSQVCNLAWSKNV--NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 364 wd~~~~~~~~~~~-~~~~v~~l~~s~~~--~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
|.+....+..+++ |...|.++.+-+.| .+|++ |.+|..|+|||+.+..++.++.||+..|..+.|+|.-.+++||
T Consensus 168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIs--gaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLIS--GADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred EEcCCCCCceeeeccccCcceEEeccCCCcceEEe--cCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence 9999988888885 66789999999866 46766 9999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 441 AGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 441 s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
++||+||||+-.+-.....+. .-+.+|.+.
T Consensus 246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~ 276 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLEKTLNYGLERVWCIA 276 (794)
T ss_pred cCCccEEEecCcceehhhhhhcCCceEEEEe
Confidence 999999999998877766643 334566654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=247.37 Aligned_cols=281 Identities=15% Similarity=0.257 Sum_probs=217.6
Q ss_pred CCceeEEecCCCCEEEEEcCCeEEEEECCCCcEE----------E---EeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeE
Q 011916 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVT----------R---LCDLGPGDSVCSVQWTR-EGSYISVGTNLGQV 233 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~----------~---~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v 233 (475)
++.+....|...+++++..+.....|+...+..+ . .+ .+|.+.|.+++|+| ++++|++|+.||+|
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 3445556677677777777766667765544321 1 12 27899999999999 88999999999999
Q ss_pred EEEECCCC-------eeeEEecCCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC
Q 011916 234 QVWDGTQC-------KRVRTFGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 234 ~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~ 303 (475)
+|||+.++ +.+..+.+|...|.+++|++ ++|++|+.|++|+|||++ .+.....+.+|...|.+++|+|+
T Consensus 101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~-tg~~~~~l~~h~~~V~sla~spd 179 (493)
T PTZ00421 101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVE-RGKAVEVIKCHSDQITSLEWNLD 179 (493)
T ss_pred EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECC-CCeEEEEEcCCCCceEEEEEECC
Confidence 99999765 35677889999999999963 689999999999999998 56677788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEEEeccccc-eeEEEECCCCCcEEEEec-CCCCCeEEEEECCCCc-eeeeec--CC
Q 011916 304 DRELASGGNDNQLLVWNQHSQQPTLRLTEHTAA-VKAIAWSPHQSSLLASGG-GTADRCIRFWNTSNGH-QLNSVD--TG 378 (475)
Q Consensus 304 ~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~~-~~~~~~--~~ 378 (475)
|.+|++++.|+.|+|||+++++.+..+..|.+. +..+.|.+++..++++|. ++.|+.|++||+++.. ++.... ..
T Consensus 180 G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~ 259 (493)
T PTZ00421 180 GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS 259 (493)
T ss_pred CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC
Confidence 999999999999999999999998888888765 457889999887777652 2368999999998754 333332 33
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 379 SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
..+....|+++++.|+++ |..|+.|++||+.+++.+..... +...+.+++|.|.-. +-...-+..|++.+..
T Consensus 260 ~~~~~~~~d~d~~~L~lg-gkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~ 332 (493)
T PTZ00421 260 SALFIPFFDEDTNLLYIG-SKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKWS--LDTRKCEIARFYALTY 332 (493)
T ss_pred CceEEEEEcCCCCEEEEE-EeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccccc--ccccceeeeEEEEecC
Confidence 456667899999988873 44699999999999887776644 456678889988532 2222234456666643
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-30 Score=256.36 Aligned_cols=242 Identities=19% Similarity=0.339 Sum_probs=201.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------------------------------
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ---------------------------------------------- 240 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~---------------------------------------------- 240 (475)
.|.+.|.++.|++||+|||+|+.||.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 6899999999999999999999999999998644
Q ss_pred --------------CeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CC
Q 011916 241 --------------CKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DD 304 (475)
Q Consensus 241 --------------~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~ 304 (475)
.+++..+.||.+.|..|+|+ .++|++++.|++|++|++. ...++..+ .|...|+|++|+| |.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~-~~~CL~~F-~HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPG-RKECLKVF-SHNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCC-CcceeeEE-ecCCeeEEEEecccCC
Confidence 01224457999999999996 6899999999999999998 56666655 4999999999999 88
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------
Q 011916 305 RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-------- 376 (475)
Q Consensus 305 ~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-------- 376 (475)
+++++|+-|+.|+||++...+.+.- ..-..-|++++|.|+|++.++ |+.+|.+++|++...+......
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avI---Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVI---GTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred CcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEE---EEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 9999999999999999988765543 344588999999999996666 5699999999998877665542
Q ss_pred -CCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEecCCCc--ceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 377 -TGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL--RVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 377 -~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~--~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
.+..|+.+.|.|... .+++ .+.|.+|+|||.++...+..++|+.. .-....|+.||++|+++++|..|++|++.
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLV--TSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLV--TSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred ccCceeeeeEecCCCCCeEEE--ecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 123799999998655 3555 45899999999998888888887532 34567899999999999999999999986
Q ss_pred CCCC
Q 011916 453 PSLK 456 (475)
Q Consensus 453 ~~~~ 456 (475)
....
T Consensus 577 ~~~~ 580 (712)
T KOG0283|consen 577 SFNS 580 (712)
T ss_pred CCcc
Confidence 5554
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=227.72 Aligned_cols=279 Identities=22% Similarity=0.395 Sum_probs=231.6
Q ss_pred CCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECCCCe
Q 011916 166 QDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREG---SYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 166 ~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg---~~la~g~~dg~v~iwd~~~~~ 242 (475)
.+|-+|..+.-.++.+|+++.||.+++|+...... .+.. +|.+.|.+++|.-.. ..|++++.|.++++|..+.+.
T Consensus 103 ~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~~-~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 103 LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKSI-KTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred cchhhhhhhcccCceEEEeecCCeeEEEecCCceE-EEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 35567888888888999999999999999866554 4443 899999999986533 369999999999999987764
Q ss_pred ee----EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCC------------------------CCccEEEecCcc
Q 011916 243 RV----RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRV------------------------SSDYICKLAGHK 292 (475)
Q Consensus 243 ~~----~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~------------------------~~~~~~~~~~h~ 292 (475)
.. ....||...|-+++. ++..+++|+.|.+|.||+... ...++..+.+|.
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 43 334499999999997 579999999999999999321 112456788999
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--
Q 011916 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-- 370 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-- 370 (475)
+.|.++.|++ ...+++++.|.+|+.||+.++..+..+.. ...+.++..+|... |+++|+ .|..|++||.+++.
T Consensus 261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~-Ll~~gs--sdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK-LLASGS--SDRHIRLWDPRTGDGS 335 (423)
T ss_pred cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc-eeeecC--CCCceeecCCCCCCCc
Confidence 9999999987 66899999999999999999998877764 56789999999776 777755 99999999998763
Q ss_pred ee--eeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 371 QL--NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 371 ~~--~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
.+ ..+.|.+.|..+.|+|...++++. |+.||++++||+++.. ++..+.+|...|.++.|+ ++..|++|+.|.+|+
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S-~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~ 413 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVS-GSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLR 413 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEE-EecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEE
Confidence 22 233678899999999988887765 8899999999999887 999999999999999997 456899999999999
Q ss_pred EEecCC
Q 011916 448 FWNVFP 453 (475)
Q Consensus 448 iW~~~~ 453 (475)
|+.-.+
T Consensus 414 i~~~~~ 419 (423)
T KOG0313|consen 414 IFKGSP 419 (423)
T ss_pred Eecccc
Confidence 987543
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=233.65 Aligned_cols=281 Identities=17% Similarity=0.293 Sum_probs=246.5
Q ss_pred CCCCCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeC-------CCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 164 SLQDDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDL-------GPGDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 164 ~~~~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~-------~~~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
.+...-++.|..|||+ + +++++.||-|.+||..+|++.+-+.. -+++.|.|++|+.|..+||+|+.||.|+
T Consensus 209 KFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIK 288 (508)
T KOG0275|consen 209 KFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIK 288 (508)
T ss_pred ecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEE
Confidence 3444556788899997 3 55556699999999999987654432 3568999999999999999999999999
Q ss_pred EEECCCCeeeEEec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe
Q 011916 235 VWDGTQCKRVRTFG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG 311 (475)
Q Consensus 235 iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~ 311 (475)
||.+.+|.+++.|. .|+..|+|+.| ++..+++++.|.++++.-++ .++.+..+++|.+.|+...|.+||..+++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK-SGK~LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK-SGKCLKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc-cchhHHHhcCccccccceEEcCCCCeEEEec
Confidence 99999999999998 89999999999 57899999999999999998 7888999999999999999999999999999
Q ss_pred CCCcEEEEECCCCceeEEEec--cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----CCCCeeEEE
Q 011916 312 NDNQLLVWNQHSQQPTLRLTE--HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD----TGSQVCNLA 385 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~ 385 (475)
.||+|++|+.++.+++.+|+. ...+|..+..-|.+.--++.+. ..++|+|.++. |+.++.+. .++...+.+
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 999999999999999888864 5577888888887655455543 78999999974 77777774 346778889
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.+|.|.++++ ...|+.++.|.+.+++...++.-|...|..++-+|..+.|++-++||.+++|.
T Consensus 445 lSpkGewiYc--igED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 445 LSPKGEWIYC--IGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ecCCCcEEEE--EccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence 9999999999 56899999999999999999999999999999999999999999999999995
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-29 Score=235.11 Aligned_cols=279 Identities=23% Similarity=0.342 Sum_probs=238.0
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
-.|..++|+|. .=+|++..-.|.||+..+....+.+. ...+.|.++.|-.||++||+|...|.|+|||+.+...++.
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~ 105 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQ 105 (487)
T ss_pred CcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHH
Confidence 34778999985 46788888899999999888777554 5678999999999999999999999999999777778889
Q ss_pred ecCCCCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 011916 247 FGGHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 247 ~~~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~ 322 (475)
+.+|+.+|..+.| ++..|++|+.|+.+++||+.. ......+.+|+..|.|.+|+| ++..+++|+.||.|++||++
T Consensus 106 ~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-AYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-cEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 9999999999998 468999999999999999984 344668999999999999999 56699999999999999999
Q ss_pred CC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeeEEEEcCCCCeEEEEEec
Q 011916 323 SQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV-DTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 323 ~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
.. ..+..+ .|..+|..+.+-|.|..++.+| ...+++||+.+|. .+... .|...|+|+.+..++..|++ |+
T Consensus 185 ~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS--~s 257 (487)
T KOG0310|consen 185 SLTSRVVEL-NHGCPVESVLALPSGSLIASAG----GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLS--GS 257 (487)
T ss_pred cCCceeEEe-cCCCceeeEEEcCCCCEEEEcC----CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEee--cc
Confidence 87 445554 5999999999999998555543 5889999998654 44444 38889999999999999999 88
Q ss_pred CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
-|+.+++||+.+.+.+..+. -.++|.+++.+||++.++.|-.||.+.+=+....++.
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~k~ 314 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKKKP 314 (487)
T ss_pred cccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehhhcccCC
Confidence 99999999999988888886 6789999999999999999999999877755444433
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-28 Score=264.32 Aligned_cols=260 Identities=16% Similarity=0.317 Sum_probs=214.3
Q ss_pred CCeEEEEECCCCcEEEEeeC----CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----e----eeEEecCCCCce
Q 011916 187 GTCVYLWTASNSKVTRLCDL----GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC----K----RVRTFGGHQTRA 254 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~----~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~----~----~~~~~~~h~~~v 254 (475)
+|.+++|+............ .|.+.|++++|+|+|++||+|+.||.|+||+.... . ....+. +...+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v 535 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKL 535 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCce
Confidence 56678888877665444332 47889999999999999999999999999997542 1 122333 34678
Q ss_pred EEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 255 GVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 255 ~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
.+++|+ +.+|++++.||+|++||+. .+..+..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++..+..+
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~-~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVA-RSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECC-CCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 899995 5799999999999999998 5677788899999999999997 7899999999999999999999888887
Q ss_pred eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 331 TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
..+ ..|.++.|++....++++|+ .|+.|++||++++. .+..+ .|...|..+.|. ++.+|++ ++.|+.|++||
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs--~s~D~~ikiWd 688 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVS--SSTDNTLKLWD 688 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEE--EECCCEEEEEe
Confidence 654 67999999654444666665 89999999998765 34343 567789999997 6778887 77899999999
Q ss_pred CCC------CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 409 YPS------MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 409 ~~~------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
+.. ...+..+.+|...+..++|++++.+|++|+.|+.|++|+....
T Consensus 689 ~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 689 LSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 974 3567889999999999999999999999999999999997644
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=222.10 Aligned_cols=282 Identities=26% Similarity=0.442 Sum_probs=222.1
Q ss_pred cccccCCCCCCCCCCCCC--------------CccCCCCCCcccCCCCCCCCCcCCCCCceeccCCCCCCCCceeEEecC
Q 011916 112 MLRFKTDHSSGPNSPYSP--------------SILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWS 177 (475)
Q Consensus 112 ~~~~~~~~~~~~~~~~s~--------------~~~~~~~~~~~~~~~~~~~~r~~~~~p~~~l~~p~~~~d~~v~~l~ws 177 (475)
|+.|+++.+++++..||| ++.|+++++..+...++ .+-+...+.-.--+..++|+
T Consensus 1 m~~~~tpgf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~-----------gi~e~~s~d~~D~LfdV~Ws 69 (311)
T KOG0277|consen 1 MQTHTTPGFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK-----------GIQECQSYDTEDGLFDVAWS 69 (311)
T ss_pred CcceecCCcccceeEecccccchhheeehhhcccccCceEEEEecCCCC-----------CeEEEEeeecccceeEeeec
Confidence 567888888888888887 44555555444333111 11111111111124459999
Q ss_pred CC---CEEEEEcCCeEEEEECCCCc-EEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCC
Q 011916 178 SQ---NVLAVGLGTCVYLWTASNSK-VTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT 252 (475)
Q Consensus 178 ~~---~~la~~~~~~V~lw~~~~~~-~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~ 252 (475)
+. .+++++.||+++|||..-.. .+..+. +|...|.++.|++ +++.+++++.||+|++|+....+.+.++.+|..
T Consensus 70 e~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~ 148 (311)
T KOG0277|consen 70 ENHENQVIAASGDGSLRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS 148 (311)
T ss_pred CCCcceEEEEecCceEEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCcc
Confidence 74 47788889999999965433 333333 8999999999999 667888999999999999999999999999999
Q ss_pred ceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-cee
Q 011916 253 RAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ-QPT 327 (475)
Q Consensus 253 ~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~-~~~ 327 (475)
.|....|+ ++++++++.|+++++||++..++.+. +..|..+|.++.|+. +.+.|++|+.|+.|++||+++. .++
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl 227 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPL 227 (311)
T ss_pred EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccc
Confidence 99999996 58999999999999999998777665 889999999999998 7789999999999999999965 468
Q ss_pred EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
..+.+|.-+|+.++|+|....++++++ .|-+++|||...+. .+...+ |..-++.+.|++.....++. ..-|+.++
T Consensus 228 ~eL~gh~~AVRkvk~Sph~~~lLaSas--YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs-~gWDe~l~ 304 (311)
T KOG0277|consen 228 FELNGHGLAVRKVKFSPHHASLLASAS--YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVAS-TGWDELLY 304 (311)
T ss_pred eeecCCceEEEEEecCcchhhHhhhcc--ccceEEecccccchhhhhhhhccceEEeccccccccCceeee-ccccccee
Confidence 888999999999999999999999987 99999999987544 444444 44568999999865555544 44799999
Q ss_pred EEEC
Q 011916 406 VWKY 409 (475)
Q Consensus 406 iwd~ 409 (475)
||+-
T Consensus 305 Vw~p 308 (311)
T KOG0277|consen 305 VWNP 308 (311)
T ss_pred eecc
Confidence 9983
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-27 Score=211.70 Aligned_cols=237 Identities=25% Similarity=0.439 Sum_probs=202.5
Q ss_pred CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCC---CeeeEEec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECC
Q 011916 207 GPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQ---CKRVRTFG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 207 ~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~---~~~~~~~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~ 279 (475)
+|.+.+..++|+|- |..||+|+.|..|+||+... -.+...+. +|+..|..++| +|++|++++.|.++.||.-.
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~ 91 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKE 91 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecC
Confidence 78889999999997 89999999999999999874 34444443 79999999999 57999999999999999754
Q ss_pred C-CCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---ceeEEEeccccceeEEEECCCCCcEEEEecC
Q 011916 280 V-SSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ---QPTLRLTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 280 ~-~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~---~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
. ..+++..+.+|..+|.+++|+++|++||+++.|..|.||.+..+ +++..+..|...|+.+.|+|... ||++++
T Consensus 92 ~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~d-lL~S~S- 169 (312)
T KOG0645|consen 92 DGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTED-LLFSCS- 169 (312)
T ss_pred CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcc-eeEEec-
Confidence 2 23678899999999999999999999999999999999999844 45678889999999999999877 777765
Q ss_pred CCCCeEEEEECC---CCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-CCCcceEEEEE
Q 011916 356 TADRCIRFWNTS---NGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-GHSLRVLYLAT 430 (475)
Q Consensus 356 s~d~~I~iwd~~---~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~ 430 (475)
.|++|++|.-. ..+++.+++ +...|.+++|++.|..|++ ++.|+.++||.+.+ .+. .|...++.+.|
T Consensus 170 -YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s--~sdD~tv~Iw~~~~-----~~~~~~sr~~Y~v~W 241 (312)
T KOG0645|consen 170 -YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVS--CSDDGTVSIWRLYT-----DLSGMHSRALYDVPW 241 (312)
T ss_pred -cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEE--ecCCcceEeeeecc-----CcchhcccceEeeee
Confidence 99999999866 346777775 4568999999999999999 88999999998652 222 37788999999
Q ss_pred CCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 431 SPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 431 spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
. ...|+++++|+.|+++.-....
T Consensus 242 ~--~~~IaS~ggD~~i~lf~~s~~~ 264 (312)
T KOG0645|consen 242 D--NGVIASGGGDDAIRLFKESDSP 264 (312)
T ss_pred c--ccceEeccCCCEEEEEEecCCC
Confidence 7 4589999999999999887543
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=233.89 Aligned_cols=287 Identities=17% Similarity=0.276 Sum_probs=239.9
Q ss_pred CcCCCCCceeccCCCCCCCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEEEE
Q 011916 150 RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 150 r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~la~ 226 (475)
-.+|.....++++++ .-++.+.|-++ .+.++|.|..|.+|+...++....-.+ +..+.|+++.|.++++++++
T Consensus 161 ~~lpS~~~~~ld~h~----gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iA 236 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHE----GEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIA 236 (459)
T ss_pred cccchhhhhhhhccc----cccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEe
Confidence 445666666777653 44677899875 677888899999999988873332222 66788999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC
Q 011916 227 GTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD 304 (475)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~ 304 (475)
++.|+.+++|++...+...++.+|+..|+++.|. ...+++|+.|.+|++||+.. ..+..... ....+..|..+ .
T Consensus 237 as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-~~C~kt~l-~~S~cnDI~~~--~ 312 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-AYCSKTVL-PGSQCNDIVCS--I 312 (459)
T ss_pred ecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-hheecccc-ccccccceEec--c
Confidence 9999999999999999999999999999999993 34499999999999999983 44433332 23345555554 5
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----CCC
Q 011916 305 RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-----TGS 379 (475)
Q Consensus 305 ~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-----~~~ 379 (475)
..+++|..|++|++||.+...+......+. .|+++..++++..+++++ .|.++.+.|+++.+....+. ..+
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI~~~~sA~g~k~as 388 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEIRQTFSAEGFKCAS 388 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeec---CCCceeeeecccccEEEEeecccccccc
Confidence 578999999999999999999988887665 999999999999998874 79999999999998877763 456
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc--ceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL--RVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~--~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
..+.+.|||++.|+++ |+.||.|+||++.+++....+..... .|++++|+|.|..|++++.++.+.+|.
T Consensus 389 DwtrvvfSpd~~YvaA--GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAA--GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ccceeEECCCCceeee--ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 7899999999999999 99999999999999998888876444 599999999999999999999999994
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=218.14 Aligned_cols=247 Identities=20% Similarity=0.365 Sum_probs=214.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-CCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDG-TQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSD 283 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~-~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~ 283 (475)
+|.+.|..+.|+|+|.+||+|+.|..|.+|++ ...+....+++|.+.|..+.| +++.|++++.|++++.||++ .++
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~-tG~ 123 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAE-TGK 123 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecc-cce
Confidence 88999999999999999999999999999995 455677788899999999999 68999999999999999999 788
Q ss_pred cEEEecCccCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 284 YICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
.+.++++|..-|..+.-+.-|. ++.+|+.|+++++||+++...++++. ....++++.|...+..++..| -|+.|+
T Consensus 124 ~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sgg---Idn~ik 199 (338)
T KOG0265|consen 124 RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGG---IDNDIK 199 (338)
T ss_pred eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecc---ccCcee
Confidence 8999999999999998554444 67788899999999999988887764 467899999999998766643 899999
Q ss_pred EEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC----CceEEEecCCCc----ceEEEEECCC
Q 011916 363 FWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS----MAKVSTLTGHSL----RVLYLATSPD 433 (475)
Q Consensus 363 iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~----~~~~~~l~~h~~----~V~~l~~spd 433 (475)
+||++.+..+..+. +...|+.+..+++|.++++ .+.|+.+++||++. ..++..+.+|.. ..+.++|+|+
T Consensus 200 vWd~r~~d~~~~lsGh~DtIt~lsls~~gs~lls--nsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~ 277 (338)
T KOG0265|consen 200 VWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLS--NSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPN 277 (338)
T ss_pred eeccccCcceEEeecccCceeeEEeccCCCcccc--ccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCC
Confidence 99999999988885 6788999999999999999 88999999999864 344777777543 3567899999
Q ss_pred CCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 434 GQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
+..+..|+.|..+++||.........+
T Consensus 278 ~~~i~ags~dr~vyvwd~~~r~~lykl 304 (338)
T KOG0265|consen 278 GTKITAGSADRFVYVWDTTSRRILYKL 304 (338)
T ss_pred CCccccccccceEEEeecccccEEEEc
Confidence 999999999999999999886655443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=210.19 Aligned_cols=281 Identities=14% Similarity=0.247 Sum_probs=232.9
Q ss_pred CceeEEecCC--CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSS--QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~--~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
-.+.-+.++- +-+++++.|....||-..+|+.+..+. +|.+.|.|+....+.++|++|+.|.++++||+++|+++.+
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~-GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~ 89 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYD-GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLAT 89 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeec-CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEE
Confidence 3455566664 457888889999999999999999887 9999999999999999999999999999999999999999
Q ss_pred ecCCCCceEEEEe--CCCEEEEEeC-----CCcEEEEECCCC------CccEEEecCccCCEEEEEEcCCCCEEEEEeCC
Q 011916 247 FGGHQTRAGVLAW--NSRILSSGSR-----DRNILQHDLRVS------SDYICKLAGHKSEVCGLKWSHDDRELASGGND 313 (475)
Q Consensus 247 ~~~h~~~v~~l~~--~~~~l~sgs~-----dg~I~iwd~~~~------~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D 313 (475)
++ -...|..+.| ++++++.... .+.|.++|++.. ..+..++..+...++.+-|.|-++.|++|..|
T Consensus 90 ~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~ 168 (327)
T KOG0643|consen 90 WK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHED 168 (327)
T ss_pred ee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCC
Confidence 87 3456777777 4676666543 467999999843 24567777888999999999999999999999
Q ss_pred CcEEEEECCCCce-eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCe
Q 011916 314 NQLLVWNQHSQQP-TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNE 392 (475)
Q Consensus 314 g~I~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~ 392 (475)
|.|.+||+++++. +.....|...|+.|.++++..+++. |+.|.+-++||..+-++++++.+..+|.+.+++|....
T Consensus 169 G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT---~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 169 GSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT---GSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred CcEEEEEcccCceeeechhhhccccccccccCCcceEEe---cccCccceeeeccceeeEEEeeecccccceecccccce
Confidence 9999999999854 4455679999999999999996665 34899999999999999999999999999999999888
Q ss_pred EEEEEecCCCeE------------EEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 393 LVSTHGYSQNQI------------MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 393 l~~~~g~~dg~I------------~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
++...|.+-..| ++|++-..+.+..+++|-++|+.++|+|||+..++|++||.||+.-++..
T Consensus 246 VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 246 VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred EEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEeccc
Confidence 887322111122 22333333567788999999999999999999999999999999877643
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=213.51 Aligned_cols=255 Identities=16% Similarity=0.338 Sum_probs=220.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--ecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT--FGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~--~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~ 281 (475)
+|...|.+|+|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+ ++.|++++.|++|++||++ .
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r-~ 96 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIR-S 96 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEec-c
Confidence 6778999999999999999999999999999988765554 45899999999995 6899999999999999999 5
Q ss_pred CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 282 SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 282 ~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
++++.......+.| -+.|+|+|+++++++.|..|.+.|.++.+.+.... ....+..++|+.++..++.+.| -|+|
T Consensus 97 ~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~G---lG~v 171 (313)
T KOG1407|consen 97 GKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNG---LGCV 171 (313)
T ss_pred CcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecC---CceE
Confidence 66666655444444 57899999999999999999999999887665543 4567888999988887777653 7999
Q ss_pred EEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEE
Q 011916 362 RFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
.|.....-+++..++ |.....++.|+|+|+++++ |+.|..+.+||+...-++..+..+.-+|..|.||.||++||+|
T Consensus 172 ~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~--GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 172 EILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFAT--GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred EEEeccccccccccccCCcceEEEEECCCCceEee--ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence 999999989998885 7788999999999999999 9999999999999999999999999999999999999999999
Q ss_pred eCCCCEEEEecCCCCCCCCcccCCccccc
Q 011916 441 AGDETLRFWNVFPSLKAPALVKDTSLWSL 469 (475)
Q Consensus 441 s~Dg~I~iW~~~~~~~~~~~~~~~~v~s~ 469 (475)
++|..|-|=++.++.+...+...++.+++
T Consensus 250 SEDh~IDIA~vetGd~~~eI~~~~~t~tV 278 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDRVWEIPCEGPTFTV 278 (313)
T ss_pred CccceEEeEecccCCeEEEeeccCCceeE
Confidence 99999999999998888777666655443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=213.87 Aligned_cols=266 Identities=19% Similarity=0.314 Sum_probs=222.0
Q ss_pred EEEEEcCCeEEEEECCCC----------cEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 181 VLAVGLGTCVYLWTASNS----------KVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~----------~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
+++++....|+=+++.-. .+..++.. .|.+.|++++. ++.++|+|+.|-+|+|||+.+.+.+..+-.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 455555666665554321 12223322 68899999998 489999999999999999999999999999
Q ss_pred CCCceEEEEeCC----CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 250 HQTRAGVLAWNS----RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 250 h~~~v~~l~~~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
|.+.|+++.|.+ ..|++|+.||.|.+|+.. ....+..+++|.+.|+.++.+|.+++.++.+.|+.++.||+-.|+
T Consensus 82 HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~-~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 82 HAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG-SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred cccceEEEEecCCcchhheeeecCCCcEEEEEcC-CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 999999999954 389999999999999998 678899999999999999999999999999999999999999887
Q ss_pred eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 326 PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 326 ~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
.-..+.- ......|.|+|.|.++++.+ ...|-+|.+.+......+.....+.++.|- ++.+|++ |.+++.|.
T Consensus 161 ~a~v~~L-~~~at~v~w~~~Gd~F~v~~----~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~v--G~d~~~i~ 232 (362)
T KOG0294|consen 161 VAFVLNL-KNKATLVSWSPQGDHFVVSG----RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLV--GGDNEWIS 232 (362)
T ss_pred cceeecc-CCcceeeEEcCCCCEEEEEe----ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEE--ecCCceEE
Confidence 6555442 22234499999999877764 688999999998888888777777777776 4556666 88999999
Q ss_pred EEECCCCceEEEecCCCcceEEEEE--CCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLAT--SPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+||..+..+...+.+|..+|-++.+ .|++.+|+|++.||.|+|||++...+.
T Consensus 233 ~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 233 LKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred EeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccC
Confidence 9999999999999999999999984 567899999999999999999877443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=235.53 Aligned_cols=273 Identities=23% Similarity=0.395 Sum_probs=240.1
Q ss_pred CceeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.+.|+.-+++ .++|+|. ||.|+||+..++...-.+. +|...|+++.|...|..||+|+.|+.|.+||+-...-...
T Consensus 66 ~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfn-gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r 144 (888)
T KOG0306|consen 66 AEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFN-GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR 144 (888)
T ss_pred ceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeec-ccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence 56788888787 4566665 9999999999886665554 8999999999999999999999999999999988888888
Q ss_pred ecCCCCceEEEEe-C-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-
Q 011916 247 FGGHQTRAGVLAW-N-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS- 323 (475)
Q Consensus 247 ~~~h~~~v~~l~~-~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~- 323 (475)
+.||...|+..-| + .+++++.+.|+.|++||+. .+.+..+...|.++|.++++.+ +.+++++.|+.+++|++..
T Consensus 145 L~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~-tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~ 221 (888)
T KOG0306|consen 145 LRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLE-TQHCFETHVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFE 221 (888)
T ss_pred eecchHHHhHHhccCCCeEEEEeccCceEEEEecc-cceeeeEEecccceEEEEEEec--ceEEEEecCCceEEEEeecc
Confidence 9999999999988 3 5899999999999999999 7888899999999999999976 7899999999999999810
Q ss_pred -----------------------Cc-------------------------------------------------------
Q 011916 324 -----------------------QQ------------------------------------------------------- 325 (475)
Q Consensus 324 -----------------------~~------------------------------------------------------- 325 (475)
++
T Consensus 222 ~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~ 301 (888)
T KOG0306|consen 222 DDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENED 301 (888)
T ss_pred cccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccccccc
Confidence 00
Q ss_pred ---------------------------------e------------------------------eEEEeccccceeEEEE
Q 011916 326 ---------------------------------P------------------------------TLRLTEHTAAVKAIAW 342 (475)
Q Consensus 326 ---------------------------------~------------------------------~~~~~~h~~~v~~l~~ 342 (475)
. ...+.+|...|.++++
T Consensus 302 ~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~v 381 (888)
T KOG0306|consen 302 DVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCV 381 (888)
T ss_pred chhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEe
Confidence 0 0123457788899999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 343 SPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 343 sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
+.+.. ++++| ..+.|++|+..+.++++++..+ .+.+..|.|.++++++ |...|.+.+||+.+...+.++++|+
T Consensus 382 S~d~~-~~~Sg---a~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~--G~k~Gel~vfdlaS~~l~Eti~AHd 454 (888)
T KOG0306|consen 382 SSDSI-LLASG---AGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVL--GTKNGELQVFDLASASLVETIRAHD 454 (888)
T ss_pred ecCce-eeeec---CCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEE--eccCCceEEEEeehhhhhhhhhccc
Confidence 98776 66665 4799999999999999999877 7888999999999999 9999999999999999999999999
Q ss_pred cceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 423 LRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 423 ~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+.|+.++.+||+..++|||.|.+|++|++.
T Consensus 455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~ 484 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADKTVKFWDFK 484 (888)
T ss_pred cceeeeeecCCCCceEEecCCcEEEEEeEE
Confidence 999999999999999999999999999975
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=207.60 Aligned_cols=277 Identities=17% Similarity=0.208 Sum_probs=228.5
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCee
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN--LGQVQVWDGTQCKR 243 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~--dg~v~iwd~~~~~~ 243 (475)
.-.+++++|+.+ .+++++.|..|.|||..+++..+.+. .+.-.|..++|......++.++. |.+|+..++.+.+.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 446889999986 45666778899999999999988886 55667888999887777777776 88999999999999
Q ss_pred eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 244 VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
++.|.||...|..|+.+ ++.+++++.|++|++||++. .++...+..... ..++|.|+|-++|++...+.|++||+
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~-~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~ 169 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV-KKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDL 169 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC-CCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEe
Confidence 99999999999999996 48999999999999999994 444444433333 34679999999999988889999999
Q ss_pred CCC--ceeEEEec---cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC----CeeEEEEcCCCCe
Q 011916 322 HSQ--QPTLRLTE---HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS----QVCNLAWSKNVNE 392 (475)
Q Consensus 322 ~~~--~~~~~~~~---h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~----~v~~l~~s~~~~~ 392 (475)
+.- .+..++.- -....+.|.|+|+|++++.+. ..+.+++.|.-+|..+..+.... -.....|+|++++
T Consensus 170 Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 170 RSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred cccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcE
Confidence 854 34444433 367789999999999999864 68999999999999888875322 2357889999999
Q ss_pred EEEEEecCCCeEEEEECCCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 393 LVSTHGYSQNQIMVWKYPSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 393 l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+++ |..||.|.+|+++++.++..+.+ +.+++.++.|+|.-..++++ +..+.+|=.....
T Consensus 247 vl~--gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 247 VLS--GSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDEDA 306 (311)
T ss_pred EEE--ecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccccc
Confidence 999 99999999999999999999998 79999999999987777665 5678899765433
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=244.52 Aligned_cols=249 Identities=20% Similarity=0.368 Sum_probs=222.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccE
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
....|..++|+|...+++++-.+|.|++||..-+.++..|..|.++|..++|++ .++++|+.|..|++|++. ..+++
T Consensus 8 kSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk-~rrcl 86 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK-TRRCL 86 (1202)
T ss_pred ccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc-cceeh
Confidence 356788999999999999999999999999999999999999999999999974 799999999999999998 67888
Q ss_pred EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
.++.+|-..|..+.|++.-.++++++.|.+|+||+..+.+++..+.+|...|.|..|+|... ++++++ -|.+|++||
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaS--LDQTVRVWD 163 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSAS--LDQTVRVWD 163 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEec--ccceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999877 677765 999999999
Q ss_pred CCCCc----------------------------eeeee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--
Q 011916 366 TSNGH----------------------------QLNSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-- 413 (475)
Q Consensus 366 ~~~~~----------------------------~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-- 413 (475)
+..-+ .++.+ .|...|.-++|+|.-..+++ |.+|.+|++|.+..-+
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS--G~DDRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS--GADDRQVKLWRMNETKAW 241 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe--cCCcceeeEEEeccccce
Confidence 85311 01111 25567899999999999998 9999999999986543
Q ss_pred eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCccc
Q 011916 414 KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 414 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
.+-+..+|.+.|.++.|+|...++++.|+|++|+|||+......+...+
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeec
Confidence 3556789999999999999999999999999999999998887777644
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=232.28 Aligned_cols=255 Identities=19% Similarity=0.333 Sum_probs=218.4
Q ss_pred CCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCcc
Q 011916 208 PGDSVCSVQWTREGSY-ISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~-la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
..+.|.+++|+|...+ +|+.+. -.++||+..+....+++......|.++.| +|.+|++|...|.|+|+|+. ....
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k-~r~i 102 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK-SRVI 102 (487)
T ss_pred ccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc-cHHH
Confidence 3578999999996543 444444 58999999998888888888899999999 69999999999999999965 5567
Q ss_pred EEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 285 ICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
+..+.+|+.+|..+.|+| ++..|++|+.|+.+++||+.+......+.+|++.|.+.+|+|-...++++|+ .||+|++
T Consensus 103 LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGs--YDg~vrl 180 (487)
T KOG0310|consen 103 LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGS--YDGKVRL 180 (487)
T ss_pred HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecC--CCceEEE
Confidence 788999999999999999 5557888899999999999998876688999999999999999999999987 9999999
Q ss_pred EECCCC-ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce-EEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 364 WNTSNG-HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK-VSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 364 wd~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
||++.. ..+.+++|+.+|..+.+-|.|..++++ ..+.|++||+-++.+ +..+..|...|+||.+..++..|++++
T Consensus 181 ~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasA---gGn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s 257 (487)
T KOG0310|consen 181 WDTRSLTSRVVELNHGCPVESVLALPSGSLIASA---GGNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGS 257 (487)
T ss_pred EEeccCCceeEEecCCCceeeEEEcCCCCEEEEc---CCCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecc
Confidence 999987 888999999999999999999999985 347899999986554 455555999999999999999999999
Q ss_pred CCCCEEEEecCCCCCCCCcccCCccccc
Q 011916 442 GDETLRFWNVFPSLKAPALVKDTSLWSL 469 (475)
Q Consensus 442 ~Dg~I~iW~~~~~~~~~~~~~~~~v~s~ 469 (475)
-|+.|++||+..-+......-.+++.|+
T Consensus 258 LD~~VKVfd~t~~Kvv~s~~~~~pvLsi 285 (487)
T KOG0310|consen 258 LDRHVKVFDTTNYKVVHSWKYPGPVLSI 285 (487)
T ss_pred cccceEEEEccceEEEEeeecccceeeE
Confidence 9999999997766655554445554443
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=236.08 Aligned_cols=249 Identities=21% Similarity=0.350 Sum_probs=217.3
Q ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQ-CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~-~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
+|...|+++.|.| .+.+|++|+.|+.|+||++.. +++++++.+|..+|.+++|+ |..+++++.|+.|++||++ .+
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtE-TG 290 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTE-TG 290 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccc-cc
Confidence 8999999999999 899999999999999999876 89999999999999999995 7899999999999999999 56
Q ss_pred ccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 283 DYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
.+...+.. ...+.++.|+|++ +.+++|+.|+.|+.||+++++.++.+..|-+.|..+.|-++|+.++.+. .|+.+
T Consensus 291 ~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS---Ddks~ 366 (503)
T KOG0282|consen 291 QVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS---DDKSV 366 (503)
T ss_pred eEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec---cCccE
Confidence 66666643 4568999999988 8999999999999999999999999999999999999999999888865 79999
Q ss_pred EEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC---ceEEEecCCC--cceEEEEECCCC
Q 011916 362 RFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM---AKVSTLTGHS--LRVLYLATSPDG 434 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~---~~~~~l~~h~--~~V~~l~~spdg 434 (475)
+||+.+.+..+..+. ......++..+|+++.+++ -+.++.|.+|.+... .+...+++|. +.-..+.|||||
T Consensus 367 riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~a--Qs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG 444 (503)
T KOG0282|consen 367 RIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAA--QSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG 444 (503)
T ss_pred EEEEcCCCccchhhcchhhccCcceecCCCCCeehh--hccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC
Confidence 999999988877664 3345778999999999999 789999999987543 3344567775 345778999999
Q ss_pred CEEEEEeCCCCEEEEecCCCCCCCCccc
Q 011916 435 QTIVTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
.+|++|+.||.+.+||..+......+..
T Consensus 445 ~~l~SGdsdG~v~~wdwkt~kl~~~lka 472 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWKTTKLVSKLKA 472 (503)
T ss_pred CeEEeecCCccEEEeechhhhhhhcccc
Confidence 9999999999999999998877666543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=219.21 Aligned_cols=240 Identities=26% Similarity=0.427 Sum_probs=208.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe---C--CCEEEEEeCCCcEEEEECCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW---N--SRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~---~--~~~l~sgs~dg~I~iwd~~~~ 281 (475)
.|.+.|.+|... ++++++|++||.++||| ..|+...++.+|.++|.+++| + ...|++++.|.++++|.++..
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd-~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWD-LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEe-cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 577888888876 78999999999999999 458899999999999999999 2 247999999999999998744
Q ss_pred Cc---cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------------------------CceeEEEecc
Q 011916 282 SD---YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS-------------------------QQPTLRLTEH 333 (475)
Q Consensus 282 ~~---~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~-------------------------~~~~~~~~~h 333 (475)
.. .+....+|...|-++...++|..+++|+.|..|.||+..+ ..++..+.+|
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH 259 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH 259 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc
Confidence 32 2334459999999999999999999999999999999321 2356778899
Q ss_pred ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q 011916 334 TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 334 ~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~ 413 (475)
..+|.++.|++.+ .+.+++ .|.+|+.||+.++.++..+.+...+.++..+|..+.|++ |+.|..|++||.+++.
T Consensus 260 t~~Vs~V~w~d~~--v~yS~S--wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~--gssdr~irl~DPR~~~ 333 (423)
T KOG0313|consen 260 TEPVSSVVWSDAT--VIYSVS--WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLAS--GSSDRHIRLWDPRTGD 333 (423)
T ss_pred ccceeeEEEcCCC--ceEeec--ccceEEEEEeecccceeeeecCcceeEeecccccceeee--cCCCCceeecCCCCCC
Confidence 9999999999843 556655 999999999999999999999999999999999999998 9999999999998753
Q ss_pred ---eEEEecCCCcceEEEEECCCC-CEEEEEeCCCCEEEEecCCCC
Q 011916 414 ---KVSTLTGHSLRVLYLATSPDG-QTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 414 ---~~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
...++.+|.+.|..+.|+|.. ..|++++.|+++++||+....
T Consensus 334 gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 334 GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 456788999999999999965 568899999999999999776
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=221.56 Aligned_cols=275 Identities=17% Similarity=0.254 Sum_probs=237.8
Q ss_pred eeEEecCC--CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 171 LNLVDWSS--QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 171 v~~l~ws~--~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+..++-.+ +.++++|.|..+.++|...+++..++. +|...|+.+.++++...+++++.|-.|+||.+..........
T Consensus 222 i~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~ 300 (506)
T KOG0289|consen 222 ITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR 300 (506)
T ss_pred eeEEeecCCCCcceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc
Confidence 45566666 578888889999999999999999887 999999999999999999999999999999998888888888
Q ss_pred CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEec-CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 249 GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 249 ~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
.|..+|+.+.. +|.||++++.||+....|++.......... ...-.+++.+|+|||.+|.+|..|+.|+|||+.++.
T Consensus 301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence 99999999988 479999999999999999995444333322 233468999999999999999999999999999999
Q ss_pred eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--CCeeEEEEcCCCCeEEEEEecCCCe
Q 011916 326 PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVNELVSTHGYSQNQ 403 (475)
Q Consensus 326 ~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~~~~l~~~~g~~dg~ 403 (475)
.+..|.+|.++|+.|+|+.+|.+|++.+ .|+.|++||++.-+...++... ..+.++.|...|.+|++ ++.+=+
T Consensus 381 ~~a~Fpght~~vk~i~FsENGY~Lat~a---dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~--~g~~l~ 455 (506)
T KOG0289|consen 381 NVAKFPGHTGPVKAISFSENGYWLATAA---DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGI--AGSDLQ 455 (506)
T ss_pred ccccCCCCCCceeEEEeccCceEEEEEe---cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEe--ecceeE
Confidence 9999999999999999999998776654 7999999999998888877544 46999999999999999 555555
Q ss_pred EEEEEC--CCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 404 IMVWKY--PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 404 I~iwd~--~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
|++++- .++..+..+..|.+..+++.|....+++++++.|..++++.+
T Consensus 456 Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 456 VYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred EEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 555553 367788888889999999999999999999999999998865
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=216.31 Aligned_cols=246 Identities=17% Similarity=0.286 Sum_probs=207.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
.|.+.|.+++.+|+.+++|+|+.|..-.||++.++.....+.+|+..|+++.| ++.+|++|+.+|.|+||+.. .+..
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s-tg~~ 140 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS-TGGE 140 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc-cCce
Confidence 79999999999999999999999999999999999999999999999999999 58999999999999999998 4555
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
...+...-..|.-+.|+|.+..|+.|+.||.|.+|.+.++...+.+.+|..++++=.|.|+|+.++. |..|++|++|
T Consensus 141 ~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~t---gy~dgti~~W 217 (399)
T KOG0296|consen 141 QWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILT---GYDDGTIIVW 217 (399)
T ss_pred EEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEE---EecCceEEEE
Confidence 5555556677889999999999999999999999999998888999999999999999999996666 3489999999
Q ss_pred ECCCCceeeeecC--CC---------------------Ce-----------------------------eEEE---EcCC
Q 011916 365 NTSNGHQLNSVDT--GS---------------------QV-----------------------------CNLA---WSKN 389 (475)
Q Consensus 365 d~~~~~~~~~~~~--~~---------------------~v-----------------------------~~l~---~s~~ 389 (475)
|..+++++..+.. +. .+ .++. |+..
T Consensus 218 n~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~ 297 (399)
T KOG0296|consen 218 NPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSK 297 (399)
T ss_pred ecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccc
Confidence 9999988776641 00 00 0011 1111
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
-.. +++|+-||.|.|||+...+....+. |...|+.+.|-+ ..+|++++.||.|+.||..++...-..
T Consensus 298 lpL--~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y 364 (399)
T KOG0296|consen 298 LPL--AACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY 364 (399)
T ss_pred cch--hhcccccceEEEEecccchhheecc-CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE
Confidence 112 2348899999999998877666554 888999999988 679999999999999999999887664
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-27 Score=242.12 Aligned_cols=289 Identities=19% Similarity=0.332 Sum_probs=232.5
Q ss_pred CCCceeEEecCCC--CEEEEE--cCCeEEEEECCCC--------c--EEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCC
Q 011916 167 DDFYLNLVDWSSQ--NVLAVG--LGTCVYLWTASNS--------K--VTRLCDL-GPGDSVCSVQWTREGSYISVGTNLG 231 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~--~~~~V~lw~~~~~--------~--~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg 231 (475)
++..+..++-+|+ .+.++| .|+.+.||+.+.- . ...++.. .|.+.|.|+.|++||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 4455778999998 455555 5778889987521 1 1122222 7899999999999999999999999
Q ss_pred eEEEEECCC------------------CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCc
Q 011916 232 QVQVWDGTQ------------------CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGH 291 (475)
Q Consensus 232 ~v~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 291 (475)
.|.||+... .+.+..+.+|...|..++|+ +.+|++++.|++|.||+.++ .+.+..+.+|
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t-F~~~~vl~~H 170 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT-FELLKVLRGH 170 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc-ceeeeeeecc
Confidence 999998662 24667788999999999995 78999999999999999995 4899999999
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc------ccceeEEEECCCCCcEEEEec-CCCCCeEEEE
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH------TAAVKAIAWSPHQSSLLASGG-GTADRCIRFW 364 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~ll~sg~-Gs~d~~I~iw 364 (475)
.+.|.++.|.|-|++||+-+.|++|+||++.+....+.+.++ ...+..+.|+|||++|++..+ ...-.++.|.
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Ii 250 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAII 250 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEE
Confidence 999999999999999999999999999998877666666543 335789999999998776542 0023568888
Q ss_pred ECCCCcee-eeecCCCCeeEEEEcCC------C---------CeEEEEEecCCCeEEEEECCCCceEEEecC-CCcceEE
Q 011916 365 NTSNGHQL-NSVDTGSQVCNLAWSKN------V---------NELVSTHGYSQNQIMVWKYPSMAKVSTLTG-HSLRVLY 427 (475)
Q Consensus 365 d~~~~~~~-~~~~~~~~v~~l~~s~~------~---------~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~ 427 (475)
+-.+.+.- .-+.|..++.++.|+|. . .|.+++.|+.|+.|.||.....+++..... ....|..
T Consensus 251 eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~D 330 (942)
T KOG0973|consen 251 ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVD 330 (942)
T ss_pred ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceee
Confidence 88777744 44578899999999971 1 233555599999999999988888766543 4567999
Q ss_pred EEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 428 LATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 428 l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
|+|+|||..|+.++.||+|.+..+...+.
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 99999999999999999999999987654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-26 Score=231.54 Aligned_cols=243 Identities=21% Similarity=0.294 Sum_probs=186.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------eee---EEecCCCCceEEEEeC---CCEEEEEeCCCcEEE
Q 011916 212 VCSVQWTREGSYISVGTNLGQVQVWDGTQC----------KRV---RTFGGHQTRAGVLAWN---SRILSSGSRDRNILQ 275 (475)
Q Consensus 212 V~~v~~spdg~~la~g~~dg~v~iwd~~~~----------~~~---~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~i 275 (475)
|.....++++..+++++.+.....|+...+ +.. ..+.+|.+.|.+++|+ +++|++|+.|++|++
T Consensus 23 i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkI 102 (493)
T PTZ00421 23 VTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMG 102 (493)
T ss_pred cccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence 333344445554555555555555554332 211 2467899999999995 479999999999999
Q ss_pred EECCCCC------ccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCc
Q 011916 276 HDLRVSS------DYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSS 348 (475)
Q Consensus 276 wd~~~~~------~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 348 (475)
||+...+ ..+..+.+|...|.+++|+|++ ++|++|+.|+.|+|||+.+++.+..+..|...|.+++|+|++.
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~- 181 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS- 181 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-
Confidence 9997432 3567789999999999999975 6999999999999999999999889999999999999999998
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCC-C-CeeEEEEcCCCCeEEEEEe--cCCCeEEEEECCCCce-EEEecCC-C
Q 011916 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTG-S-QVCNLAWSKNVNELVSTHG--YSQNQIMVWKYPSMAK-VSTLTGH-S 422 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~-~v~~l~~s~~~~~l~~~~g--~~dg~I~iwd~~~~~~-~~~l~~h-~ 422 (475)
++++++ .|+.|++||+++++.+..+... + .+..+.|.+++..++++.. ..|+.|++||+++... +.....+ .
T Consensus 182 lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~ 259 (493)
T PTZ00421 182 LLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQS 259 (493)
T ss_pred EEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCC
Confidence 455544 8999999999999988877533 2 3457889999888876521 3479999999987653 3333333 3
Q ss_pred cceEEEEECCCCCEEEEEe-CCCCEEEEecCCCCCC
Q 011916 423 LRVLYLATSPDGQTIVTGA-GDETLRFWNVFPSLKA 457 (475)
Q Consensus 423 ~~V~~l~~spdg~~l~s~s-~Dg~I~iW~~~~~~~~ 457 (475)
..+....|++++.+|++++ .|+.|++||+..+...
T Consensus 260 ~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~ 295 (493)
T PTZ00421 260 SALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLT 295 (493)
T ss_pred CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceE
Confidence 4566678999999999887 5999999999876643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-28 Score=218.44 Aligned_cols=252 Identities=17% Similarity=0.273 Sum_probs=215.1
Q ss_pred EeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec--------CCCCceEEEEeC--CCEEEEEeCCCc
Q 011916 203 LCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG--------GHQTRAGVLAWN--SRILSSGSRDRN 272 (475)
Q Consensus 203 ~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~--------~h~~~v~~l~~~--~~~l~sgs~dg~ 272 (475)
.+.++....+.|..|+|||+||++|+-||-|.+|+..+|+..+.++ .+...|.|++|+ ...|++|+.||.
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 3445677888999999999999999999999999999988765443 577899999994 689999999999
Q ss_pred EEEEECCCCCccEEEec-CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEE
Q 011916 273 ILQHDLRVSSDYICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 273 I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~ 351 (475)
|++|.++ .+.+++.+. +|...|+++.|+.|+..+++++.|.+++|.-+++|+++..+++|...|+...|.++|.+++.
T Consensus 287 IKvWri~-tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 287 IKVWRIE-TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred EEEEEEe-cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEE
Confidence 9999999 566666665 89999999999999999999999999999999999999999999999999999999998887
Q ss_pred EecCCCCCeEEEEECCCCceeeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC---CCcce
Q 011916 352 SGGGTADRCIRFWNTSNGHQLNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG---HSLRV 425 (475)
Q Consensus 352 sg~Gs~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---h~~~V 425 (475)
+. .||+|++|+.++.+|+.++.. ..+|.++..-|....-+++ +...+.|+|.++. ++.+..+.. ..+..
T Consensus 366 aS---sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iV-CNrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 366 AS---SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIV-CNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred ec---CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEE-EcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 65 699999999999999998863 4578888887765543333 5678899999974 666666653 33456
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 426 LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
.+.+.||.|.++++.++|+.++-|.+..+.....+
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence 67789999999999999999999999988876653
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-25 Score=203.51 Aligned_cols=247 Identities=17% Similarity=0.283 Sum_probs=208.1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeC--CCcEEEEECCCCCc
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR--DRNILQHDLRVSSD 283 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~--dg~I~iwd~~~~~~ 283 (475)
....|.++.|+.+|.+|++++.|.+++|||..++++++++..+.-.+..++| ..+.++.++. |.+|+..++. ..+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~-dNk 91 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLH-DNK 91 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEee-cCc
Confidence 4688999999999999999999999999999999999999988878888888 4566666665 8899999998 788
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
.++-+.+|...|.+|+.+|-+..+++++.|++|++||++..++...+.. ..-..++|.|.|- ++|++. ....|++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~--~~~pi~AfDp~GL-ifA~~~--~~~~IkL 166 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL--SGRPIAAFDPEGL-IFALAN--GSELIKL 166 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec--CCCcceeECCCCc-EEEEec--CCCeEEE
Confidence 9999999999999999999889999999999999999998777655543 3334579999997 455543 3449999
Q ss_pred EECCCC--ceeeeec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcce---EEEEECCCC
Q 011916 364 WNTSNG--HQLNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV---LYLATSPDG 434 (475)
Q Consensus 364 wd~~~~--~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V---~~l~~spdg 434 (475)
||++.. .+...+. .......+.|+|+|++++. +...+.+++.|.-+|..+.++.++...- ...+|+||+
T Consensus 167 yD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl--sT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 167 YDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL--STNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE--EeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 999864 3334432 3467899999999999999 7789999999999999999988765443 678899999
Q ss_pred CEEEEEeCCCCEEEEecCCCCCCCCccc
Q 011916 435 QTIVTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
+++++|+.||+|.+|++.++.+......
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 9999999999999999998887665543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=232.18 Aligned_cols=269 Identities=19% Similarity=0.296 Sum_probs=228.5
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEe------------------------------e------CCCCCcEEEEEEcCCCCE
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLC------------------------------D------LGPGDSVCSVQWTREGSY 223 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~------------------------------~------~~~~~~V~~v~~spdg~~ 223 (475)
-+++++.|++|+||+++.+..-.++ + .+....+.+++.+|+|++
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 4788899999999999763111110 0 123347899999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC-----CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEE
Q 011916 224 ISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-----SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGL 298 (475)
Q Consensus 224 la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 298 (475)
||+|..-|.++||++...+....++.|...|.|+.++ ..+|+++++|+.|+|+|+......++++.+|...|+++
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsv 553 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSV 553 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEE
Confidence 9999999999999999999999999999999999995 37899999999999999997788899999999999999
Q ss_pred EEcCCC--CEEEEEeCCCcEEEEECCCCceeEEEec-----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011916 299 KWSHDD--RELASGGNDNQLLVWNQHSQQPTLRLTE-----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ 371 (475)
Q Consensus 299 ~~s~~~--~~lasg~~Dg~I~iwd~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~ 371 (475)
+|-..| ..++++|.|..|.+--.+.......+.. ....+..++..|..+++++.+ .|+.|+|||+.+|+.
T Consensus 554 KFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c---QDrnirif~i~sgKq 630 (1080)
T KOG1408|consen 554 KFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC---QDRNIRIFDIESGKQ 630 (1080)
T ss_pred EEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe---cccceEEEeccccce
Confidence 998877 6899999998876544332222222222 245689999999999666654 899999999999999
Q ss_pred eeeec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 372 LNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 372 ~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
.+.++ +.+....+...|.|.|+++ .++|.++.++|+.++++++...||...|++|.|.+|.+.|++.+.||.|.
T Consensus 631 ~k~FKgs~~~eG~lIKv~lDPSgiY~at--Scsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIF 708 (1080)
T KOG1408|consen 631 VKSFKGSRDHEGDLIKVILDPSGIYLAT--SCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIF 708 (1080)
T ss_pred eeeecccccCCCceEEEEECCCccEEEE--eecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEE
Confidence 99985 4567889999999999999 78999999999999999999999999999999999999999999999999
Q ss_pred EEecCC
Q 011916 448 FWNVFP 453 (475)
Q Consensus 448 iW~~~~ 453 (475)
||.+..
T Consensus 709 vW~lp~ 714 (1080)
T KOG1408|consen 709 VWKLPL 714 (1080)
T ss_pred EEECch
Confidence 999865
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=228.89 Aligned_cols=244 Identities=12% Similarity=0.189 Sum_probs=186.7
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCe--------eeEEecCCCCceEE
Q 011916 186 LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQCK--------RVRTFGGHQTRAGV 256 (475)
Q Consensus 186 ~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~~~--------~~~~~~~h~~~v~~ 256 (475)
..+.|.+|+.........+. +|.+.|.+++|+|+ +.+||+|+.||+|+|||+.++. .+..+.+|...|.+
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~s 130 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISI 130 (568)
T ss_pred ceeEEEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEE
Confidence 35678999987766555554 89999999999996 7899999999999999997542 34467899999999
Q ss_pred EEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc
Q 011916 257 LAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH 333 (475)
Q Consensus 257 l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h 333 (475)
++|++ .+|++++.|++|++||++. +.....+. |...|.+++|+++|.+|++++.|+.|+|||+++++.+..+.+|
T Consensus 131 Vaf~P~g~~iLaSgS~DgtIrIWDl~t-g~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH 208 (568)
T PTZ00420 131 IDWNPMNYYIMCSSGFDSFVNIWDIEN-EKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIH 208 (568)
T ss_pred EEECCCCCeEEEEEeCCCeEEEEECCC-CcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecc
Confidence 99974 3568999999999999984 44444444 5678999999999999999999999999999999999999999
Q ss_pred ccceeEE-----EECCCCCcEEEEecC-CCCCeEEEEECCC-CceeeeecCCCC--eeEEEEcC-CCCeEEEEEecCCCe
Q 011916 334 TAAVKAI-----AWSPHQSSLLASGGG-TADRCIRFWNTSN-GHQLNSVDTGSQ--VCNLAWSK-NVNELVSTHGYSQNQ 403 (475)
Q Consensus 334 ~~~v~~l-----~~sp~~~~ll~sg~G-s~d~~I~iwd~~~-~~~~~~~~~~~~--v~~l~~s~-~~~~l~~~~g~~dg~ 403 (475)
.+.+... .|++++.+++++|.. ..++.|+|||+++ ++++..+..... +....|.+ ++.++++ |..|+.
T Consensus 209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ls--GkGD~t 286 (568)
T PTZ00420 209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLI--GKGDGN 286 (568)
T ss_pred cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEE--EECCCe
Confidence 8765433 345888877777641 1125899999995 566666544433 22234444 4666666 889999
Q ss_pred EEEEECCCCceEEEecC--CCcceEEEEECCCCC
Q 011916 404 IMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQ 435 (475)
Q Consensus 404 I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~ 435 (475)
|++|++..+. +..+.. +..++.+++|.|+..
T Consensus 287 Ir~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 287 CRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence 9999997663 333322 567788999999743
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.6e-26 Score=199.01 Aligned_cols=275 Identities=15% Similarity=0.244 Sum_probs=230.6
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.+..++|+.+ .++.++.|+.+.+|+++.......... +|.+.|-.++|.| ....|++++.|.+|++||+..++++.
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~ 101 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTA 101 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEE
Confidence 4677999875 577777799999999998865444333 7888999999998 56799999999999999999999999
Q ss_pred EecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011916 246 TFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 246 ~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
......+.+....+ +|.+++.++.|..|...|.+. .+.. .-.....++.-+.|+.++.+++....-|+|.|......
T Consensus 102 ~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~-~~~~-~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL 179 (313)
T KOG1407|consen 102 RIETKGENINITWSPDGEYIAVGNKDDRITFIDART-YKIV-NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSL 179 (313)
T ss_pred EeeccCcceEEEEcCCCCEEEEecCcccEEEEEecc-ccee-ehhcccceeeeeeecCCCCEEEEecCCceEEEEecccc
Confidence 88766665554433 689999999999999999983 3332 23334567888999987777776666799999999999
Q ss_pred ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCe
Q 011916 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQ 403 (475)
Q Consensus 325 ~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~ 403 (475)
++++.+..|.....+|.|+|+|+++++ |+.|-.+.+||+..--|++.+. +.-+|..+.|+.+|++|++ +++|..
T Consensus 180 kpv~si~AH~snCicI~f~p~GryfA~---GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lAS--aSEDh~ 254 (313)
T KOG1407|consen 180 KPVQSIKAHPSNCICIEFDPDGRYFAT---GSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLAS--ASEDHF 254 (313)
T ss_pred ccccccccCCcceEEEEECCCCceEee---ccccceeeccChhHhhhheeeccccCceEEEEeccCcceeec--cCccce
Confidence 999999999999999999999996655 4599999999999998988884 6789999999999999999 899999
Q ss_pred EEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC---------CCEEEEecC
Q 011916 404 IMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD---------ETLRFWNVF 452 (475)
Q Consensus 404 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---------g~I~iW~~~ 452 (475)
|-|=++++|..+.+++ ++++...++|+|...+||-++.| |+|++|-+.
T Consensus 255 IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 255 IDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred EEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence 9999999999999987 78899999999999999987765 566666543
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-26 Score=218.73 Aligned_cols=292 Identities=17% Similarity=0.285 Sum_probs=225.8
Q ss_pred CcCCCCCceeccCCCCCCCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcE----EEEeeCCCCCcEEEEEEcCCCCE
Q 011916 150 RKVPKTPHKVLDAPSLQDDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKV----TRLCDLGPGDSVCSVQWTREGSY 223 (475)
Q Consensus 150 r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~----~~~~~~~~~~~V~~v~~spdg~~ 223 (475)
..||..-+-.|. ...--|.++...|. .+++++.|..|++||+..-.. .+.+.-.....|.+++|++.|..
T Consensus 153 ~~IP~shEi~l~----hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~ 228 (641)
T KOG0772|consen 153 KLIPGSHEIQLK----HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQ 228 (641)
T ss_pred hcCCccceEecc----CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCe
Confidence 345554443333 13344677777764 799999999999999976422 22222244678999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeEE------------ecCCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEe
Q 011916 224 ISVGTNLGQVQVWDGTQCKRVRT------------FGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 224 la~g~~dg~v~iwd~~~~~~~~~------------~~~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~ 288 (475)
|++.+.....+|+|-...+.+.. -+||...++|.+|++ ..+++++.||+++|||+.......+.+
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 99988889999999655444332 248999999999965 789999999999999998655444433
Q ss_pred c-----CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc--eeE-EEecccc--ceeEEEECCCCCcEEEEecCCCC
Q 011916 289 A-----GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ--PTL-RLTEHTA--AVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 289 ~-----~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~--~~~-~~~~h~~--~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
. +..-.++.++|++||++||+|..||.|.+|+..... +.. .-..|.. .|++|+|+++|++|+.=| .|
T Consensus 309 k~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg---~D 385 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG---FD 385 (641)
T ss_pred eeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc---CC
Confidence 3 233468999999999999999999999999986432 222 2345776 899999999999777754 79
Q ss_pred CeEEEEECCCCc-eeeee---cCCCCeeEEEEcCCCCeEEEEEec------CCCeEEEEECCCCceEEEecCCCcceEEE
Q 011916 359 RCIRFWNTSNGH-QLNSV---DTGSQVCNLAWSKNVNELVSTHGY------SQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428 (475)
Q Consensus 359 ~~I~iwd~~~~~-~~~~~---~~~~~v~~l~~s~~~~~l~~~~g~------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 428 (475)
+++++||++..+ ++... .....-+.++|+|+.+.|++ |. ..|.+++||..+.+.+..+.-.+..|..+
T Consensus 386 ~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~T--GtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~ 463 (641)
T KOG0772|consen 386 DTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILT--GTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRC 463 (641)
T ss_pred CceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEe--cccccCCCCCceEEEEeccceeeEEEecCCCceEEEE
Confidence 999999998754 33332 34456788999999999998 54 35689999999999999998888899999
Q ss_pred EECCCCCEEEEEeCCCCEEEEe
Q 011916 429 ATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 429 ~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.|+|.=+.|..|+.||+++++=
T Consensus 464 ~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 464 LWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eecchhhheeeecCCCceEEEE
Confidence 9999988899999999998874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=225.83 Aligned_cols=299 Identities=18% Similarity=0.251 Sum_probs=243.3
Q ss_pred CCCCceeEEecCC---CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 166 QDDFYLNLVDWSS---QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 166 ~~d~~v~~l~ws~---~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
.+++ +.++.--+ +.++.++.+|.+.|||+.+++.+..+. ++...|+++.=+|-=..+|+|..+|+|.|+++..++
T Consensus 158 ~~~~-Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~-~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dk 235 (910)
T KOG1539|consen 158 EGDF-ITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ-EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDK 235 (910)
T ss_pred cCCc-eeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEec-ccccceeEeccCCcceEEEEeccCceEEEEEcccCc
Confidence 3444 55555333 368888899999999999999999887 777999999999988899999999999999999999
Q ss_pred eeEEecCCCCceEEEEe--CC-CEEEEEeCCCcEEEEECCCCCccEEEecCccC--------------------------
Q 011916 243 RVRTFGGHQTRAGVLAW--NS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKS-------------------------- 293 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~--~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-------------------------- 293 (475)
.+.+|+...++|+.++| +| .++++|+..|.+.+||++...........|.+
T Consensus 236 il~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 236 ILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 99999866799999999 46 57888888899999999733222111222322
Q ss_pred --------------------------------------------------------------------------------
Q 011916 294 -------------------------------------------------------------------------------- 293 (475)
Q Consensus 294 -------------------------------------------------------------------------------- 293 (475)
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence
Q ss_pred ------------------------------------------------------CEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011916 294 ------------------------------------------------------EVCGLKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 294 ------------------------------------------------------~V~~l~~s~~~~~lasg~~Dg~I~iw 319 (475)
.+++++.++.|++.+.|...|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 34455555566666666666666666
Q ss_pred ECCCCceeEEE---eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 320 NQHSQQPTLRL---TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 320 d~~~~~~~~~~---~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
++++|-....+ ..|..+|++++...-++.++++| .+|.+++||..+...+..+..+..+..+..+.....+++
T Consensus 476 NmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~---~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~- 551 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAG---ADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAI- 551 (910)
T ss_pred EcccCeeecccccCccccCceeEEEecCCCceEEEcc---CcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhh-
Confidence 66666555555 36899999999988887555543 799999999999999999999999999999999888888
Q ss_pred EecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccCCccccccC
Q 011916 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGR 471 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~s~~~ 471 (475)
+.++-.|.++|..+.+.+..+.+|.++|++++|||||++|++++.|++|++||+.++.....+.-+..+.+++.
T Consensus 552 -~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~ 625 (910)
T KOG1539|consen 552 -ALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSF 625 (910)
T ss_pred -hcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEE
Confidence 77899999999999999999999999999999999999999999999999999999988777665555555443
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-26 Score=217.24 Aligned_cols=280 Identities=21% Similarity=0.295 Sum_probs=234.0
Q ss_pred CCCCCCceeEEecCCC-CEEEEEcCCeEEEEECCCCc---EEEEee-CCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 164 SLQDDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSK---VTRLCD-LGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 164 ~~~~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~---~~~~~~-~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
.+.+.-.|+++..|.. .-+..|..|+|+|||+.... .+..++ +..+..|.++.+.|||+.|++|+.-.+|.|||+
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 4455666888888764 67777888999999997532 122222 245689999999999999999999999999998
Q ss_pred CCCee--eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC
Q 011916 239 TQCKR--VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN 314 (475)
Q Consensus 239 ~~~~~--~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg 314 (475)
..... ...+......+.+++. +.+..+++..||.|.|||++ ....+..+.+|...+.||.+++||..|.+|+-|+
T Consensus 495 AapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLh-nq~~VrqfqGhtDGascIdis~dGtklWTGGlDn 573 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN 573 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcc-cceeeecccCCCCCceeEEecCCCceeecCCCcc
Confidence 76533 2333333345555655 45899999999999999999 7888999999999999999999999999999999
Q ss_pred cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEE
Q 011916 315 QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 394 (475)
+|+.||+++++.+++. .....|.++..+|.+.++++ |.+.+.+.+..+...+......+.+.|.++.|.+.|++++
T Consensus 574 tvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlav---GMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 574 TVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAV---GMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFV 649 (705)
T ss_pred ceeehhhhhhhhhhhh-hhhhhheecccCCCccceee---ecccCcEEEEecCCccceeecccccEEEEEEecccCceee
Confidence 9999999998876654 35688999999999998777 5689999999988777777778899999999999999999
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+ -..|+.+..|..+-+..+...+ ....|+++.+|.|.++|+||+.|..-.||.+
T Consensus 650 S--tGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 650 S--TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred e--cCchhhhhhccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9 5589999999999999988876 4568999999999999999999999998876
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=215.60 Aligned_cols=250 Identities=16% Similarity=0.274 Sum_probs=212.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---KRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~ 281 (475)
.|.+.|.-+.||++|+|||+++.|.+..||++... +..+++.+|..+|..+.|+ .++|++|+.|..+.+||+.++
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg 301 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG 301 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence 78999999999999999999999999999987543 4577888999999999995 589999999999999999844
Q ss_pred CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCe
Q 011916 282 SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRC 360 (475)
Q Consensus 282 ~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~ 360 (475)
.....--.+|...+.+++|.|||..+++|+.|+.+..||+.... +....+ ....|.+++.++||+++++++ .|..
T Consensus 302 d~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~---~d~~ 377 (519)
T KOG0293|consen 302 DLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVT---VDKK 377 (519)
T ss_pred hhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEe---cccc
Confidence 33322233456789999999999999999999999999997543 333333 235689999999999999987 6999
Q ss_pred EEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc--eEEEEECC-CCCEE
Q 011916 361 IRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR--VLYLATSP-DGQTI 437 (475)
Q Consensus 361 I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~--V~~l~~sp-dg~~l 437 (475)
|++++..+......+....+|+++.++.+++++++ .-.+..|++||+.....+..+.||... |..-+|.- +..++
T Consensus 378 i~l~~~e~~~dr~lise~~~its~~iS~d~k~~Lv--nL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fi 455 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISEEQPITSFSISKDGKLALV--NLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFI 455 (519)
T ss_pred eeeechhhhhhhccccccCceeEEEEcCCCcEEEE--EcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceE
Confidence 99999998888888888999999999999999998 778999999999998889999998755 44455654 55899
Q ss_pred EEEeCCCCEEEEecCCCCCCCCccc
Q 011916 438 VTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 438 ~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
++|++|+.|+||+-..+.....+..
T Consensus 456 aSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred EecCCCceEEEEEccCCceeEeecC
Confidence 9999999999999999887766543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-24 Score=209.40 Aligned_cols=281 Identities=12% Similarity=0.140 Sum_probs=213.9
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI-SVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW 259 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~l-a~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~ 259 (475)
+++.+.++.|++||..+++....+.. ...+.+++|+|+|+.+ +++..++.|++||..+++.+..+..+.. +..++|
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~--~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~ 80 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPV--GQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFAL 80 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEEC--CCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEE
Confidence 34556699999999999988777753 3446789999999876 5667789999999999988877765443 456677
Q ss_pred C--CCEEEE-EeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCCceeEEEecccc
Q 011916 260 N--SRILSS-GSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN-QLLVWNQHSQQPTLRLTEHTA 335 (475)
Q Consensus 260 ~--~~~l~s-gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg-~I~iwd~~~~~~~~~~~~h~~ 335 (475)
+ ++.+++ ++.++.|.+||++. ...+..+. +...+.+++|+|++++++++..++ .+.+||..+++.+..+. ...
T Consensus 81 ~~~g~~l~~~~~~~~~l~~~d~~~-~~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~ 157 (300)
T TIGR03866 81 HPNGKILYIANEDDNLVTVIDIET-RKVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQ 157 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCC-CeEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCC
Confidence 4 565654 45689999999984 44444444 234578899999999999988765 56788998877655443 234
Q ss_pred ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--------CCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--------SQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--------~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
.+..++|+|++..+++++. .++.|++||+.+++.+..+... .....++|+|+++.++++ ...++.|.+|
T Consensus 158 ~~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~-~~~~~~i~v~ 234 (300)
T TIGR03866 158 RPRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA-LGPANRVAVV 234 (300)
T ss_pred CccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE-cCCCCeEEEE
Confidence 5678999999998877653 6899999999999887765421 124568899999997764 3356789999
Q ss_pred ECCCCceEEEecCCCcceEEEEECCCCCEEEEE-eCCCCEEEEecCCCCCCCCcccCCccccccC
Q 011916 408 KYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG-AGDETLRFWNVFPSLKAPALVKDTSLWSLGR 471 (475)
Q Consensus 408 d~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iW~~~~~~~~~~~~~~~~v~s~~~ 471 (475)
|..+++.+..+. +...+.+++|+|+|++|+++ +.++.|++||+..+.....+..+...|++..
T Consensus 235 d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~ 298 (300)
T TIGR03866 235 DAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPWGVVV 298 (300)
T ss_pred ECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccceeEe
Confidence 999888776553 44578999999999999886 4589999999999888777666666777654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=215.52 Aligned_cols=247 Identities=24% Similarity=0.482 Sum_probs=207.1
Q ss_pred eeCCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCe----------eeEEecCCCCceEEEEeC---CCEEEEEeC
Q 011916 204 CDLGPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQCK----------RVRTFGGHQTRAGVLAWN---SRILSSGSR 269 (475)
Q Consensus 204 ~~~~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~----------~~~~~~~h~~~v~~l~~~---~~~l~sgs~ 269 (475)
..+.|.+.|+.+..-|+. ..+|+++..+.|.|||..+.. .-..+.+|...-..|+|+ ...|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 344789999999999955 677788889999999976432 222677999988899996 468999999
Q ss_pred CCcEEEEECCCCCc------cEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC--CCceeEEEeccccceeEE
Q 011916 270 DRNILQHDLRVSSD------YICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH--SQQPTLRLTEHTAAVKAI 340 (475)
Q Consensus 270 dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~--~~~~~~~~~~h~~~v~~l 340 (475)
|++|.+||+..... ....+.+|...|..++|++ +..+|++++.|+.+.|||++ +.++......|.+.|.++
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 99999999975443 3566889999999999999 66789999999999999999 566677788899999999
Q ss_pred EECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC------
Q 011916 341 AWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM------ 412 (475)
Q Consensus 341 ~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~------ 412 (475)
+|+|.+.+++|+|+ .|++|.+||+++-. ++..+ .|...|.++.|+|+...+++++| .|+.+.|||+..-
T Consensus 279 ~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-~D~rl~vWDls~ig~eq~~ 355 (422)
T KOG0264|consen 279 AFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-TDRRLNVWDLSRIGEEQSP 355 (422)
T ss_pred EeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-cCCcEEEEeccccccccCh
Confidence 99999999999977 99999999999753 45555 57789999999999888887755 8999999998532
Q ss_pred --------ceEEEecCCCcceEEEEECCCCC-EEEEEeCCCCEEEEecCC
Q 011916 413 --------AKVSTLTGHSLRVLYLATSPDGQ-TIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 413 --------~~~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW~~~~ 453 (475)
+.+..--||+..|..+.|+|+.. .|++.+.|+.+.||++..
T Consensus 356 eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 356 EDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred hhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 33566678999999999999765 577889999999999873
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=206.99 Aligned_cols=281 Identities=16% Similarity=0.303 Sum_probs=227.9
Q ss_pred CCCceeEEecCCC-CEEEEE-cCCeEEEEECCC------------C------cEEEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 167 DDFYLNLVDWSSQ-NVLAVG-LGTCVYLWTASN------------S------KVTRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~-~~~~V~lw~~~~------------~------~~~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
+...+.+-+|+++ .++|.| .|-.|+|.|++. + -+++.+ ..|.+.|+++.|+|....|++
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl-YDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL-YDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh-hhccCcccceeecchhheEEe
Confidence 3445788899998 455544 488999999871 1 122222 278899999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeEEec--CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEE--ecCccCCEEEEEE
Q 011916 227 GTNLGQVQVWDGTQCKRVRTFG--GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICK--LAGHKSEVCGLKW 300 (475)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~--~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~ 300 (475)
|+.|++|++||+......+.++ .....|.+++|+ |.+|+.|....++++||+.+.+..+.. -..|.+.|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 9999999999987654444433 345688999995 699999999999999999854433322 3468999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEec-cc-cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-HT-AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG 378 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-h~-~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~ 378 (475)
++.+++.++|+.||.|++||--+++++.++.. |. ..|.+..|..+|++++.+| .|..+++|.+.+++++..+...
T Consensus 270 s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG---~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 270 SSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG---KDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred cCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC---CcceeeeeeecCCceEEEEecC
Confidence 99999999999999999999999999887764 43 5799999999999999887 7999999999999999988532
Q ss_pred C------CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-CCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 379 S------QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-GHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 379 ~------~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+ --+...|+....+++.. ....+.++-||.++...+..+. +|++.+..+.-||.+.-++||+.|-.+|+|--
T Consensus 347 g~tgrq~~rtqAvFNhtEdyVl~p-DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 347 GTTGRQKHRTQAVFNHTEDYVLFP-DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred CcccchhhhhhhhhcCccceEEcc-ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 1 23556788888888774 3456789999999988776654 79999999999999999999999999999964
Q ss_pred C
Q 011916 452 F 452 (475)
Q Consensus 452 ~ 452 (475)
.
T Consensus 426 r 426 (430)
T KOG0640|consen 426 R 426 (430)
T ss_pred c
Confidence 3
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.4e-25 Score=224.02 Aligned_cols=224 Identities=18% Similarity=0.334 Sum_probs=176.8
Q ss_pred EeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCc-------cEEEecCccCCEE
Q 011916 227 GTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSD-------YICKLAGHKSEVC 296 (475)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~-------~~~~~~~h~~~V~ 296 (475)
|+.+|.|++|+......+..+.+|...|.+++|+ +++|++|+.|++|++||+..... .+..+.+|...|.
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~ 129 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence 5667899999988888888999999999999996 46999999999999999974322 3446788999999
Q ss_pred EEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 297 GLKWSHDDRE-LASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 297 ~l~~s~~~~~-lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
+++|+|++.. |++++.|++|+|||+++++.+..+. |...|.+++|+|+|..|++ ++ .|+.|+|||+++++.+..+
T Consensus 130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat-~s--~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSG-TC--VGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEE-Ee--cCCEEEEEECCCCcEEEEE
Confidence 9999998875 5789999999999999998777765 6678999999999995544 43 7999999999999998877
Q ss_pred c-CCCCee-----EEEEcCCCCeEEEEEecCC---CeEEEEECCC-CceEEEec--CCCcceEEEEECCCCCEEEEEeCC
Q 011916 376 D-TGSQVC-----NLAWSKNVNELVSTHGYSQ---NQIMVWKYPS-MAKVSTLT--GHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 376 ~-~~~~v~-----~l~~s~~~~~l~~~~g~~d---g~I~iwd~~~-~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
. |.+.+. ...|++++.+|+++ |.++ +.|+|||+++ .+.+..+. .+.+.+......++|.++++|+.|
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTt-G~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD 284 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILST-GFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGD 284 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEE-EcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECC
Confidence 5 333332 23456888888885 4333 4799999985 44554443 333444444445679999999999
Q ss_pred CCEEEEecCCCC
Q 011916 444 ETLRFWNVFPSL 455 (475)
Q Consensus 444 g~I~iW~~~~~~ 455 (475)
++|++|++..+.
T Consensus 285 ~tIr~~e~~~~~ 296 (568)
T PTZ00420 285 GNCRYYQHSLGS 296 (568)
T ss_pred CeEEEEEccCCc
Confidence 999999997653
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.2e-24 Score=184.54 Aligned_cols=281 Identities=20% Similarity=0.312 Sum_probs=223.6
Q ss_pred CCCCCceeEEecCCC-CEEEEEcC-CeEEEEECC------CCc------EEEEe--eCCCCCcEEEEEEcCCCCEEEEEe
Q 011916 165 LQDDFYLNLVDWSSQ-NVLAVGLG-TCVYLWTAS------NSK------VTRLC--DLGPGDSVCSVQWTREGSYISVGT 228 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~-~~la~~~~-~~V~lw~~~------~~~------~~~~~--~~~~~~~V~~v~~spdg~~la~g~ 228 (475)
+.+..-+.+++|.|. .+.|+|.+ .+++|-... .+. ...++ ...|.+.|.|.+|+|+|.+||+|+
T Consensus 29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 345667889999996 78888875 456554322 111 01111 226789999999999999999999
Q ss_pred CCCeEEEEECCCC--ee---eEEecCCCCceEEEEe-C-----CCEEEEEe-CCCcEEEEECCCCCccEEEecCccCCEE
Q 011916 229 NLGQVQVWDGTQC--KR---VRTFGGHQTRAGVLAW-N-----SRILSSGS-RDRNILQHDLRVSSDYICKLAGHKSEVC 296 (475)
Q Consensus 229 ~dg~v~iwd~~~~--~~---~~~~~~h~~~v~~l~~-~-----~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 296 (475)
+|.+|++.-+... .. -.++..|.+.|..++| + +.+|++++ .|..|++-|.. .++....+.+|.+.|.
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~-~g~~~~a~sghtghil 187 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG-RGQGFHALSGHTGHIL 187 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-CCCcceeecCCcccEE
Confidence 9999999765432 22 2356789999999999 2 35677665 56778888877 6778889999999998
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec-------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 297 GLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 297 ~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
++- +-++-.+++|+.|.+|++||++-..++.++.. ...+|.+++..|.|+ |+++|. .|....+||++.+
T Consensus 188 aly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr-ll~sg~--~dssc~lydirg~ 263 (350)
T KOG0641|consen 188 ALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR-LLASGH--ADSSCMLYDIRGG 263 (350)
T ss_pred EEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc-eeeecc--CCCceEEEEeeCC
Confidence 873 44788999999999999999998887776643 236799999999999 777755 9999999999999
Q ss_pred ceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceEEEecCCCcceEEEEECCCCCEEEEEeCCC
Q 011916 370 HQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 370 ~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
+.++.+ .+...|.++.|+|...++++ ++-|..|++-|+... -.+..+..|...+..+.|+|..-.+++.+.|.
T Consensus 264 r~iq~f~phsadir~vrfsp~a~yllt--~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadk 341 (350)
T KOG0641|consen 264 RMIQRFHPHSADIRCVRFSPGAHYLLT--CSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADK 341 (350)
T ss_pred ceeeeeCCCccceeEEEeCCCceEEEE--ecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcc
Confidence 999988 47788999999999999999 888999999998642 22344456999999999999998999999999
Q ss_pred CEEEEecC
Q 011916 445 TLRFWNVF 452 (475)
Q Consensus 445 ~I~iW~~~ 452 (475)
++.+|-+.
T Consensus 342 t~tlwa~~ 349 (350)
T KOG0641|consen 342 TATLWALN 349 (350)
T ss_pred eEEEeccC
Confidence 99999864
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-26 Score=230.02 Aligned_cols=248 Identities=25% Similarity=0.367 Sum_probs=220.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-ecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT-FGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+...+.+..|. +.++++++.+++|++||..++..+.. +.+|.+.|.++++. +.+|++|+.|.++++||.. .+.+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~-sg~C 283 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS-TGEC 283 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC-CCcE
Confidence 45678888887 66899999999999999999999988 99999999999997 8999999999999999987 7899
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
...+.+|...|.++... +..+++|+.|.+|++|++.++..+..+.+|.++|.++..+ +. ++++|+ .|+.|++|
T Consensus 284 ~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs--~d~~v~VW 356 (537)
T KOG0274|consen 284 THSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EP-LLVSGS--YDGTVKVW 356 (537)
T ss_pred EEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CC-EEEEEe--cCceEEEE
Confidence 99999999999998874 5588889999999999999999999999999999999998 44 666654 99999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-AKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
|+.+++++..+. |...|.++.+... ..++. |..|+.|++||+.+. +++.++.+|...|..+.+ .+++|++++.
T Consensus 357 ~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~S--gs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~a 431 (537)
T KOG0274|consen 357 DPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLS--GSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSA 431 (537)
T ss_pred EhhhceeeeeecCCcceEEEEEecCc-ceEEe--eeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccc
Confidence 999999999985 6788999988776 77777 889999999999999 999999999999977766 6889999999
Q ss_pred CCCEEEEecCCCCCCCCcccC--Ccccccc
Q 011916 443 DETLRFWNVFPSLKAPALVKD--TSLWSLG 470 (475)
Q Consensus 443 Dg~I~iW~~~~~~~~~~~~~~--~~v~s~~ 470 (475)
|++|++||...+....++... ..++.+.
T Consensus 432 D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~ 461 (537)
T KOG0274|consen 432 DGTIKLWDAEEGECLRTLEGRHVGGVSALA 461 (537)
T ss_pred cccEEEeecccCceeeeeccCCcccEEEee
Confidence 999999999999988876652 4454443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-26 Score=232.93 Aligned_cols=246 Identities=24% Similarity=0.406 Sum_probs=211.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECCC------------CeeeEEecCCCCceEEEEe--CCCEEEEEeCCC
Q 011916 208 PGDSVCSVQWTREGSYISVGT--NLGQVQVWDGTQ------------CKRVRTFGGHQTRAGVLAW--NSRILSSGSRDR 271 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~--~dg~v~iwd~~~------------~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg 271 (475)
++..|.+|..+|||..+|+|+ .||.+.||+.+. .+.+.++..|.+.|.|+.| ||.+||+|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 456799999999999999999 899999998542 3456677899999999999 689999999999
Q ss_pred cEEEEECCC------CC-----------ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccc
Q 011916 272 NILQHDLRV------SS-----------DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHT 334 (475)
Q Consensus 272 ~I~iwd~~~------~~-----------~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~ 334 (475)
.|.||+... .+ +.+..+.+|...|..++|+|++.+|++++.|++|.||+.++.+.+..+.+|.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~ 171 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ 171 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence 999999872 11 2567789999999999999999999999999999999999999999999999
Q ss_pred cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-------CCCeeEEEEcCCCCeEEEEEecCCC--eEE
Q 011916 335 AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-------GSQVCNLAWSKNVNELVSTHGYSQN--QIM 405 (475)
Q Consensus 335 ~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~s~~~~~l~~~~g~~dg--~I~ 405 (475)
+.|..+.|.|-|+++++-+ .|++|+||++.+..+.+.+.. ..-...+.|+|||.+|++.++...+ .+.
T Consensus 172 s~VKGvs~DP~Gky~ASqs---dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~ 248 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQS---DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA 248 (942)
T ss_pred ccccceEECCccCeeeeec---CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence 9999999999999766654 799999999888777777642 2458899999999999997665443 688
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCC-----CC------------EEEEEeCCCCEEEEecCCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPD-----GQ------------TIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spd-----g~------------~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
|.+-.+.+.-..+.||.+++.++.|+|. .. .+|+|+.|++|.||.......
T Consensus 249 IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 249 IIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRP 316 (942)
T ss_pred EEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCc
Confidence 9998888888999999999999999982 11 678899999999999854443
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=202.68 Aligned_cols=283 Identities=17% Similarity=0.290 Sum_probs=233.4
Q ss_pred CCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC-----
Q 011916 164 SLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG----- 238 (475)
Q Consensus 164 ~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~----- 238 (475)
++.|.++-.+.+-...-+-+++.|.+-.||.++++.+...+. +|.+.|.+|+|++.+.++++++.|++..||..
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~ 224 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWE 224 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCc
Confidence 344444433333222234445569999999999999988886 99999999999999999999999999999961
Q ss_pred -CC----------------------------------CeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCC
Q 011916 239 -TQ----------------------------------CKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 239 -~~----------------------------------~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~ 281 (475)
.. ..++..+.+|.+.|.+..| .++.+++++.|.+..+||++ .
T Consensus 225 vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVE-t 303 (481)
T KOG0300|consen 225 VPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVE-T 303 (481)
T ss_pred CCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeec-c
Confidence 11 0133456789999999999 57999999999999999999 7
Q ss_pred CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCe
Q 011916 282 SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC 360 (475)
Q Consensus 282 ~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~ 360 (475)
+..+..+.+|..+.+.++-+|..+++++.+.|.+.++||++.. ..+..|.+|...|+++.|.-+.+ +++| +.|.+
T Consensus 304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~--vVSg--SDDrT 379 (481)
T KOG0300|consen 304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR--VVSG--SDDRT 379 (481)
T ss_pred CceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc--eeec--CCCce
Confidence 8899999999999999999999999999999999999999843 34678999999999999998875 4454 49999
Q ss_pred EEEEECCCC-ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-----ecCCCcceEEEEECCCC
Q 011916 361 IRFWNTSNG-HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST-----LTGHSLRVLYLATSPDG 434 (475)
Q Consensus 361 I~iwd~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~-----l~~h~~~V~~l~~spdg 434 (475)
|++||+++. .++.++...+++..++.+..+..|+. --++.+|++||+... .+.. -++|...|.|++|..+.
T Consensus 380 vKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAi--PhDNRqvRlfDlnG~-RlaRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 380 VKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAI--PHDNRQVRLFDLNGN-RLARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred EEEeeeccccCcceeeecCCccceeEeecCCceEEe--ccCCceEEEEecCCC-ccccCCcccccccceeeeeeeccccC
Confidence 999999875 47888999999999999999989888 667889999999644 3333 35799999999998653
Q ss_pred --CEEEEEeCCCCEEEEecCCCC
Q 011916 435 --QTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 435 --~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.-|++++.|..+.=|++....
T Consensus 457 p~cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred cccccccccccceeeeeEecccC
Confidence 358899999999999987543
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=214.94 Aligned_cols=244 Identities=19% Similarity=0.352 Sum_probs=218.6
Q ss_pred CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccE
Q 011916 207 GPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 207 ~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
+|.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|+++...+++++.|++|+.|.+.. ...
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~--~p~ 141 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDG--PPL 141 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecccceEEecCCcceeeeeccC--Ccc
Confidence 889999999999976 78999999999999999999999999999999999999889999999999999999874 344
Q ss_pred EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
..+. ....+.+|.-+..+..+|++|. .|.|||.....++..+......|.++.|+|-...++++++ .|+.|.+||
T Consensus 142 ~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~--sDrsIvLyD 216 (433)
T KOG0268|consen 142 HTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCA--SDRSIVLYD 216 (433)
T ss_pred eeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeec--cCCceEEEe
Confidence 4444 3456788888778889999986 5999999999999999988899999999999999999987 899999999
Q ss_pred CCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEecCCCcceEEEEECCCCCEEEEEeCCC
Q 011916 366 TSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
++++.+++.+-....-..++|+|.+-.+++ +.+|..++.||++.. .++....+|...|.++.|||.|+-+++|+.|.
T Consensus 217 ~R~~~Pl~KVi~~mRTN~IswnPeafnF~~--a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 217 LRQASPLKKVILTMRTNTICWNPEAFNFVA--ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred cccCCccceeeeeccccceecCccccceee--ccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 999999999988888899999996666666 889999999999886 45677789999999999999999999999999
Q ss_pred CEEEEecCCCCCCCC
Q 011916 445 TLRFWNVFPSLKAPA 459 (475)
Q Consensus 445 ~I~iW~~~~~~~~~~ 459 (475)
+|+||.+..+.....
T Consensus 295 sIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDI 309 (433)
T ss_pred eEEEeecCCCcchhh
Confidence 999999998776543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=208.95 Aligned_cols=280 Identities=22% Similarity=0.360 Sum_probs=231.3
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEE-EEee----------------CCCCCcEEEEEEcCCCCEEEEE
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVT-RLCD----------------LGPGDSVCSVQWTREGSYISVG 227 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~-~~~~----------------~~~~~~V~~v~~spdg~~la~g 227 (475)
+...+.++..+++ .++.++.++.|.-|++.+++.. ..+. ..|...+.+++.++||+|||+|
T Consensus 141 H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatg 220 (479)
T KOG0299|consen 141 HQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATG 220 (479)
T ss_pred ccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEec
Confidence 3455778888887 7888899999999999988743 1111 1466789999999999999999
Q ss_pred eCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 228 TNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
+.|..|+||+..+.+.++.+.+|.+.|.+++| ..+.|++++.|+.|++|++. ....+.++.+|...|.+|....-++
T Consensus 221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~-~~s~vetlyGHqd~v~~IdaL~reR 299 (479)
T KOG0299|consen 221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSID-QLSYVETLYGHQDGVLGIDALSRER 299 (479)
T ss_pred CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehh-HhHHHHHHhCCccceeeechhcccc
Confidence 99999999999999999999999999999999 35899999999999999998 6677888999999999999988888
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--C------
Q 011916 306 ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--T------ 377 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--~------ 377 (475)
.+-+|+.|.++++|++... ....+.+|.+.+.|++|-.+.+ +++ |+.+|.|.+|++.+.+++.... |
T Consensus 300 ~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~H--fvs--GSdnG~IaLWs~~KKkplf~~~~AHgv~~~~ 374 (479)
T KOG0299|consen 300 CVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDEH--FVS--GSDNGSIALWSLLKKKPLFTSRLAHGVIPEL 374 (479)
T ss_pred eEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEecccc--eee--ccCCceEEEeeecccCceeEeeccccccCCc
Confidence 8888889999999999543 3457788999999999988776 444 4499999999999988877652 1
Q ss_pred -----CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceEEEecCCCcceEEEEECCCCCEEEEEe-CCCCEE
Q 011916 378 -----GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----AKVSTLTGHSLRVLYLATSPDGQTIVTGA-GDETLR 447 (475)
Q Consensus 378 -----~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~ 447 (475)
...|++++..|....+++ |+.+|.|++|.+..+ .++..+. -.+.|+.|+|+++|+.|++|. ....+-
T Consensus 375 ~~~~~~~Witsla~i~~sdL~as--GS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiGkEhRlG 451 (479)
T KOG0299|consen 375 DPVNGNFWITSLAVIPGSDLLAS--GSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIGKEHRLG 451 (479)
T ss_pred cccccccceeeeEecccCceEEe--cCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecccccccc
Confidence 127899999999999998 999999999999776 4455554 678899999999999776664 444455
Q ss_pred EEecCCCC
Q 011916 448 FWNVFPSL 455 (475)
Q Consensus 448 iW~~~~~~ 455 (475)
-|-....-
T Consensus 452 RW~~~k~~ 459 (479)
T KOG0299|consen 452 RWWCLKSG 459 (479)
T ss_pred eeeEeecc
Confidence 56554433
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-25 Score=198.18 Aligned_cols=262 Identities=17% Similarity=0.254 Sum_probs=206.7
Q ss_pred ceeEEecCCC--CEE-EEEcCCeEEEEECCC-CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQ--NVL-AVGLGTCVYLWTASN-SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~--~~l-a~~~~~~V~lw~~~~-~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.|.+|+|||. +++ |++.|++|++|+++. +.........|.++|.+++|+.||..+++|+.|+.+++||+.++ ++.
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~ 107 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVS 107 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-Cee
Confidence 3667999983 666 556699999999987 45554444478999999999999999999999999999999999 666
Q ss_pred EecCCCCceEEEEeC-C---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 246 TFGGHQTRAGVLAWN-S---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~-~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
.+..|.++|.++.|- + ..|++|+.|++|+.||.| ....+.++. -...+.++.. ...+++++..+..|.+|++
T Consensus 108 ~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R-~~~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 108 QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTR-SSNPVATLQ-LPERVYAADV--LYPMAVVATAERHIAVYNL 183 (347)
T ss_pred eeeecccceeEEEEecCCCcceeEecccccceeecccC-CCCeeeeee-ccceeeehhc--cCceeEEEecCCcEEEEEc
Confidence 788899999999992 2 588999999999999999 444444443 2445666655 3447888899999999999
Q ss_pred CCCceeEEE--eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee--ec-C---------CCCeeEEEEc
Q 011916 322 HSQQPTLRL--TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS--VD-T---------GSQVCNLAWS 387 (475)
Q Consensus 322 ~~~~~~~~~--~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~--~~-~---------~~~v~~l~~s 387 (475)
+++...... ..-.-.+++|+..++.... +.| +.+|.+.+..+..+..... +. | -..|.+++|+
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~-alG--siEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGF-ALG--SIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCce-Eee--eecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEee
Confidence 876432211 1234568899999988866 444 4899999999887633222 21 1 1247889999
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 388 KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
|....|++ .++||.+.+||-....++.+.+.|..+|++..|+.+|.++|-+.
T Consensus 261 P~hgtlvT--aGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 261 PVHGTLVT--AGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cccceEEE--ecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEe
Confidence 99999998 56899999999999999999999999999999999999988653
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-26 Score=209.64 Aligned_cols=276 Identities=17% Similarity=0.239 Sum_probs=217.8
Q ss_pred eeEEecCCC---CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 171 LNLVDWSSQ---NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 171 v~~l~ws~~---~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
|.|++=+|+ .+++++.||.|+|||+........+. .|.+.|..|++.. ..+++++.|.+|+.|.++. ..++++
T Consensus 69 V~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~ti 144 (433)
T KOG0268|consen 69 VSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTI 144 (433)
T ss_pred cchhhcCcchhhhhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceee
Confidence 455666665 46777789999999999998888887 7899999999986 6788889999999999775 355555
Q ss_pred cCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 011916 248 GGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 248 ~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
-+ ...+..+.- -++.++++|. .|.|||.. ...++..+.--...|.++.|+| ....|++|+.|+.|.+||++.+
T Consensus 145 lg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~-R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~ 220 (433)
T KOG0268|consen 145 LG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQ-RDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA 220 (433)
T ss_pred ec-cccccccccccccccccccCc--eeeecccc-cCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence 43 233344443 3567788774 58999998 6677888888888899999999 4558888889999999999999
Q ss_pred ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeee-cCCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LNSV-DTGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 325 ~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
.++..+.- .-.-+.|+|+|. .+.++++ ++|..++.||++.-+. +... +|.+.|.++.|+|.|+++++ |+-|.
T Consensus 221 ~Pl~KVi~-~mRTN~IswnPe-afnF~~a--~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvs--gsyDk 294 (433)
T KOG0268|consen 221 SPLKKVIL-TMRTNTICWNPE-AFNFVAA--NEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVS--GSYDK 294 (433)
T ss_pred Cccceeee-eccccceecCcc-ccceeec--cccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcc--ccccc
Confidence 98876642 445678999994 4456664 4999999999987543 3332 57889999999999999999 88999
Q ss_pred eEEEEECCCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 403 QIMVWKYPSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
.|+||.+..+........ --..|.++.||.|.+++++|+.|+.|++|.-...++...+
T Consensus 295 sIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 295 SIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred eEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 999999987654333211 2245999999999999999999999999998877766543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=219.09 Aligned_cols=238 Identities=24% Similarity=0.413 Sum_probs=208.8
Q ss_pred CCceeEEecCCC-CEEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ-NVLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
..++.++.|+++ ..||+| .+|.|.|||..+.+.+..+...|...|-+++|. +..+.+|+.+|.|..+|+...+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 578999999986 555555 589999999999988888775589999999998 6789999999999999998876655
Q ss_pred E-ecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEe--CCCcEEEE
Q 011916 246 T-FGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGG--NDNQLLVW 319 (475)
Q Consensus 246 ~-~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~--~Dg~I~iw 319 (475)
. +.+|...|..+.| ++.+|++|+.|+.+.|||.. .......+..|...|.+++|+| ...+||+|+ .|+.|++|
T Consensus 295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~-~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw 373 (484)
T KOG0305|consen 295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGL-SPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW 373 (484)
T ss_pred hhhhcccceeeeeEECCCCCeeccCCCccceEeccCC-CccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence 5 8899999999999 57999999999999999996 6677888999999999999999 677999975 68999999
Q ss_pred ECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEe
Q 011916 320 NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 320 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g 398 (475)
|..+++.+..+. -.+.|..|.|++..+.|+++. |..++.|.||+..+.+.+..+ .|...|..++++|+|..+++ |
T Consensus 374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t--~ 449 (484)
T KOG0305|consen 374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVT--G 449 (484)
T ss_pred EcCCCcEecccc-cCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEE--e
Confidence 999999887765 468899999999998777776 688999999999998877776 57788999999999999999 8
Q ss_pred cCCCeEEEEECCCC
Q 011916 399 YSQNQIMVWKYPSM 412 (475)
Q Consensus 399 ~~dg~I~iwd~~~~ 412 (475)
..|.++++|++-..
T Consensus 450 a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 450 AADETLRFWNLFDE 463 (484)
T ss_pred cccCcEEeccccCC
Confidence 88999999998654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=209.42 Aligned_cols=268 Identities=19% Similarity=0.289 Sum_probs=217.4
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRIL 264 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l 264 (475)
..+.+||+.+|.....+.-+....-.++..- .+.|++++.. ...|.+|.+...........-.+.|.+++-+ |.+|
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l 96 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFL 96 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEE
Confidence 4699999999987666642211111111111 3356666654 4578999987766655444567789999873 6788
Q ss_pred EEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---------CCceeEEEecccc
Q 011916 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH---------SQQPTLRLTEHTA 335 (475)
Q Consensus 265 ~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~---------~~~~~~~~~~h~~ 335 (475)
+.|+..|.|++|.+. .+..+..+.+|-+.|+++.|+.||.+|++|+.||.|.+|++. +-++++.+..|.-
T Consensus 97 ~ag~i~g~lYlWels-sG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl 175 (476)
T KOG0646|consen 97 LAGTISGNLYLWELS-SGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL 175 (476)
T ss_pred EeecccCcEEEEEec-cccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc
Confidence 888899999999998 778888889999999999999999999999999999999864 3467889999999
Q ss_pred ceeEEEECCCC-CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC---
Q 011916 336 AVKAIAWSPHQ-SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--- 411 (475)
Q Consensus 336 ~v~~l~~sp~~-~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--- 411 (475)
+|+++...+.| ...+.+.+ .|.++++||+..|..+.++.....+.+++.+|.+..+++ |.++|.|.+.++..
T Consensus 176 sITDl~ig~Gg~~~rl~TaS--~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yi--Gt~~G~I~~~~~~~~~~ 251 (476)
T KOG0646|consen 176 SITDLQIGSGGTNARLYTAS--EDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYI--GTEEGKIFQNLLFKLSG 251 (476)
T ss_pred eeEEEEecCCCccceEEEec--CCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEe--cCCcceEEeeehhcCCc
Confidence 99999987763 22344443 899999999999999999999999999999999999999 99999999988743
Q ss_pred -------------CceEEEecCCCc--ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 412 -------------MAKVSTLTGHSL--RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 412 -------------~~~~~~l~~h~~--~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
+..+..+.||.+ .|+|++.+-||..|++|+.||.|+|||+...+...++.
T Consensus 252 ~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 252 QSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 234567788988 89999999999999999999999999999988777665
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=214.81 Aligned_cols=246 Identities=21% Similarity=0.345 Sum_probs=214.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
.|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+.+.++ +..+++.+.|+.+++|++. ..
T Consensus 173 ~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd-~~ 251 (459)
T KOG0288|consen 173 AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD-SL 251 (459)
T ss_pred ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc-ch
Confidence 578899999999998899999999999999987766 677888889999999995 6899999999999999998 67
Q ss_pred ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 283 DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
....++.+|+..|+++.|......+++|+.|.+|++||+....+..++. ....+.+|..++ ..+++|. .|++|+
T Consensus 252 r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~~---~~~~SgH--~DkkvR 325 (459)
T KOG0288|consen 252 RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCSI---SDVISGH--FDKKVR 325 (459)
T ss_pred hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccccceEecc---eeeeecc--cccceE
Confidence 7888999999999999998877779999999999999999987766553 245566777662 2666655 999999
Q ss_pred EEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC----CcceEEEEECCCCCEEE
Q 011916 363 FWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH----SLRVLYLATSPDGQTIV 438 (475)
Q Consensus 363 iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~spdg~~l~ 438 (475)
+||+++..+...+..++.|+++..++++..|++ ...|..+.+.|+++.+....+... ....+.+.|||++.|++
T Consensus 326 fwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLs--ssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 326 FWDIRSADKTRSVPLGGRVTSLDLSMDGLELLS--SSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred EEeccCCceeeEeecCcceeeEeeccCCeEEee--ecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 999999999999999999999999999999999 678999999999999887777542 22378899999999999
Q ss_pred EEeCCCCEEEEecCCCCCCCCcc
Q 011916 439 TGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 439 s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
+|+.||.|+||++++++....+.
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred eccCCCcEEEEEccCceEEEEec
Confidence 99999999999999998876644
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=226.39 Aligned_cols=282 Identities=21% Similarity=0.347 Sum_probs=225.7
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeC--CC----CCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC--
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDL--GP----GDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQ-- 240 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~--~~----~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~-- 240 (475)
.++++-..+ +-++++....+.||.+........+.+ +. .-.+..|+|.. +.++||+++.+|.|.+||+..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 455555565 556666667777777665432222211 11 13455788876 668999999999999999987
Q ss_pred -CeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCc
Q 011916 241 -CKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQ 315 (475)
Q Consensus 241 -~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~ 315 (475)
.+++..|..|...+.++.|+ +++|++|+.||+|++||++ .......+.+....|..++|+| .+.+++++...|.
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR-~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~ 200 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLR-SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY 200 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeee-cccccccccccchhhhceeeccCCCceEEEecCCce
Confidence 67777889999999999995 6999999999999999999 5566677777888999999999 7789999999999
Q ss_pred EEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC--ceeeeecCCCCeeEEEEcCCCCe
Q 011916 316 LLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG--HQLNSVDTGSQVCNLAWSKNVNE 392 (475)
Q Consensus 316 I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~--~~~~~~~~~~~v~~l~~s~~~~~ 392 (475)
|++||++.. ++..++..|.++|.++.|+|++. ++|+|| .|+.|+|||..+. ..+.++.+..++..+.|-|...+
T Consensus 201 lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~-~lATGG--RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 201 LQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE-WLATGG--RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred EEEeeccCchhHHHHhhcccCceEEEeecCCCc-eeeecC--CCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 999999965 46778889999999999999665 777776 9999999999865 45677789999999999999887
Q ss_pred EEEEE-ecCCCeEEEEECCCC-ceEEEecCCCcceEEEEECC-CCCEEEEEeCCCCEEEEecCCCCC
Q 011916 393 LVSTH-GYSQNQIMVWKYPSM-AKVSTLTGHSLRVLYLATSP-DGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 393 l~~~~-g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.++++ --.|-.|+|||++.. -+..++..|+..++.++|-. |...|.+++.||+|..-.+.....
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 66543 235778999999754 45678888999999999965 567899999999998777765543
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=214.59 Aligned_cols=271 Identities=18% Similarity=0.299 Sum_probs=224.8
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEE-EEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCS-VQWTR-EGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~-v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
|..++..++ -+++++.|+++++|+-..++......+ ++.+-|.. +++.+ ++-.|++|+.|+.|.+|......++.+
T Consensus 17 Vr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~ 96 (745)
T KOG0301|consen 17 VRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYT 96 (745)
T ss_pred hheeEecCCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhh
Confidence 455555555 477777799999999988877664333 56676766 88875 555699999999999999999999999
Q ss_pred ecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 247 FGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 247 ~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
+.+|...|.+++. +...+++|+.|.++++|-+. ++...+.+|...|.+++.-|++ .+++|+.|.+|++|.- ++
T Consensus 97 LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~---~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~ 170 (745)
T KOG0301|consen 97 LKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIG---ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GT 170 (745)
T ss_pred hhccccceeeeecCCcCceEecccccceEEecch---hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cc
Confidence 9999999999996 44559999999999999864 5566699999999999999987 8999999999999986 67
Q ss_pred eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 326 PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 326 ~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
.+.+|.+|..-|+++++-+++. ++.++ .||.|++|++.....+....|.+-+.++....++..+++ .++|++++
T Consensus 171 ~l~tf~gHtD~VRgL~vl~~~~-flScs---NDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs--~gEDrtlr 244 (745)
T KOG0301|consen 171 LLKTFSGHTDCVRGLAVLDDSH-FLSCS---NDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVS--TGEDRTLR 244 (745)
T ss_pred hhhhhccchhheeeeEEecCCC-eEeec---CCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEE--ecCCceEE
Confidence 8889999999999999999877 55544 799999999944444445578888999998888888888 66999999
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
||+.. ++.+.+.-.+..|+++.+-++|. |++|+.||.||||.......
T Consensus 245 iW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~ 292 (745)
T KOG0301|consen 245 IWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRK 292 (745)
T ss_pred EeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccccc
Confidence 99987 67777765566899999988886 67788999999999885544
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-25 Score=196.30 Aligned_cols=243 Identities=21% Similarity=0.278 Sum_probs=197.5
Q ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC-Ceee-EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCC
Q 011916 207 GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQ-CKRV-RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 207 ~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~-~~~~-~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~ 281 (475)
...+.|.+|+||| ...++++|+.||+|++|+++. +..+ +....|.++|.+++| +|..+++|+.|+.+++||+...
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 5678999999999 556777999999999999987 3333 345579999999999 5799999999999999999843
Q ss_pred CccEEEecCccCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 282 SDYICKLAGHKSEVCGLKWSHDDR--ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 282 ~~~~~~~~~h~~~V~~l~~s~~~~--~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
.+..+..|.++|..+.|-+... .|++|+.|.+|+.||.+...++.++. -...+.++..-.. +++.+. .++
T Consensus 105 --Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~~p---m~vVat--a~r 176 (347)
T KOG0647|consen 105 --QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVLYP---MAVVAT--AER 176 (347)
T ss_pred --CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhccCc---eeEEEe--cCC
Confidence 5677888999999999988655 89999999999999999999888775 3566776665432 555543 799
Q ss_pred eEEEEECCCCceeeee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC--ceEEEecCCCc---------ce
Q 011916 360 CIRFWNTSNGHQLNSV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM--AKVSTLTGHSL---------RV 425 (475)
Q Consensus 360 ~I~iwd~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~--~~~~~l~~h~~---------~V 425 (475)
.|.+|+++++...... ...-++.+++..++....+. |+-+|.+.|..+..+ +.-.+++.|.. .|
T Consensus 177 ~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~al--GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV 254 (347)
T KOG0647|consen 177 HIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFAL--GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV 254 (347)
T ss_pred cEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEe--eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence 9999999876543322 24567899999998888877 889999999988765 55566666652 47
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 426 LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
++++|+|.-..|+|++.||++.+||-+...+...
T Consensus 255 Nsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 255 NSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred cceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 8899999999999999999999999887766655
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=199.04 Aligned_cols=260 Identities=18% Similarity=0.317 Sum_probs=226.3
Q ss_pred EEeeCCCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEE
Q 011916 202 RLCDLGPGDSVCSVQWTR---EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQH 276 (475)
Q Consensus 202 ~~~~~~~~~~V~~v~~sp---dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iw 276 (475)
..|. +|..+|..++|+| +|-+|++++.||.-.+-+-+++.-+.+|.+|.+.|+....|. ...++++.|-+-++|
T Consensus 8 l~c~-ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCH-GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEc-CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 3443 8999999999986 889999999999999999999999999999999999999864 567888999999999
Q ss_pred ECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEeccccceeEEEECCCCCcEEEEecC
Q 011916 277 DLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ-PTLRLTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 277 d~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
|.- .+..+..+ .|+.-|..++|+.|.++|++|+.+..++|||++..+ +...+.+|.+.|+.+.|+...+.++.+.
T Consensus 87 ~a~-tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa-- 162 (334)
T KOG0278|consen 87 DAV-TGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA-- 162 (334)
T ss_pred hhh-hhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec--
Confidence 987 44444444 488889999999999999999999999999998653 5678889999999999999888888863
Q ss_pred CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC
Q 011916 356 TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
.|++|++||.+++..++.+...++|.++..+++|.+|.++. .+.|.+||..+...+..++. ...|.+...+|+..
T Consensus 163 -dd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~---gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P~k~ 237 (334)
T KOG0278|consen 163 -DDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAY---GSSVKFWDAKSFGLLKSYKM-PCNVESASLHPKKE 237 (334)
T ss_pred -cCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEec---CceeEEeccccccceeeccC-ccccccccccCCCc
Confidence 89999999999999999999999999999999999998853 46799999999998887763 45688999999999
Q ss_pred EEEEEeCCCCEEEEecCCCCCCCC--cccCCccccccC
Q 011916 436 TIVTGAGDETLRFWNVFPSLKAPA--LVKDTSLWSLGR 471 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~~~~~~--~~~~~~v~s~~~ 471 (475)
.+++|++|..++.||..++..... ..+.++|.++.+
T Consensus 238 ~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrF 275 (334)
T KOG0278|consen 238 FFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRF 275 (334)
T ss_pred eEEecCcceEEEEEeccCCceeeecccCCCCceEEEEE
Confidence 999999999999999999988765 345566665544
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=205.57 Aligned_cols=243 Identities=21% Similarity=0.401 Sum_probs=196.0
Q ss_pred CCCCCceeEEecCCC--CEEEEEc-CCeEEEEECCCCcEEEE---------eeCCCCCcEEEEEEcCC-CCEEEEEeCCC
Q 011916 165 LQDDFYLNLVDWSSQ--NVLAVGL-GTCVYLWTASNSKVTRL---------CDLGPGDSVCSVQWTRE-GSYISVGTNLG 231 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~--~~la~~~-~~~V~lw~~~~~~~~~~---------~~~~~~~~V~~v~~spd-g~~la~g~~dg 231 (475)
+.++--||.+..-|+ +++|+.. ++.|+|||.....-... .-.+|.+.-++++|++. .-+|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 344555777777775 5666654 78999999875322111 11277777788999994 45799999999
Q ss_pred eEEEEECCCCe-------eeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCC-CCccEEEecCccCCEEEEEE
Q 011916 232 QVQVWDGTQCK-------RVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRV-SSDYICKLAGHKSEVCGLKW 300 (475)
Q Consensus 232 ~v~iwd~~~~~-------~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~ 300 (475)
+|.+||+.... ....+.+|...|..++|+ ..+|++++.|+.+.|||+|. ..+......+|.++|.|++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 99999986532 345678999999999995 58999999999999999996 45566778899999999999
Q ss_pred cC-CCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee-----
Q 011916 301 SH-DDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN----- 373 (475)
Q Consensus 301 s~-~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~----- 373 (475)
+| ++..||+|+.|++|.+||+++. ++++.+.+|...|..|.|+|+...++++++ .|+.+.+||+..-....
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg--~D~rl~vWDls~ig~eq~~eda 358 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG--TDRRLNVWDLSRIGEEQSPEDA 358 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc--cCCcEEEEeccccccccChhhh
Confidence 99 7779999999999999999975 468899999999999999999999999987 99999999986422111
Q ss_pred -------ee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 374 -------SV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 374 -------~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
.+ .|...|..+.|+|+...++++ ...|+.+.||++.
T Consensus 359 ~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~S-vaeDN~LqIW~~s 404 (422)
T KOG0264|consen 359 EDGPPELLFIHGGHTAKVSDFSWNPNEPWTIAS-VAEDNILQIWQMA 404 (422)
T ss_pred ccCCcceeEEecCcccccccccCCCCCCeEEEE-ecCCceEEEeecc
Confidence 12 355789999999999998886 5689999999975
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=192.92 Aligned_cols=254 Identities=20% Similarity=0.248 Sum_probs=205.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
...+.|.+|.|+|.+..|++++.||++++||+........+ .|..++.+++| +...+++|+.||.|+.+|+... ..
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~--~~ 87 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTG--NE 87 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEecCC--cc
Confidence 55789999999999999999999999999999988555555 48999999999 5689999999999999999743 34
Q ss_pred EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
..+..|...|.||.+++....+++|+.|++|++||.+....+..+.. ...|.++....+ .|++ | +.|.++.+||
T Consensus 88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~g~--~LvV-g--~~~r~v~iyD 161 (323)
T KOG1036|consen 88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVSGN--RLVV-G--TSDRKVLIYD 161 (323)
T ss_pred eeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-CceEEEEeccCC--EEEE-e--ecCceEEEEE
Confidence 45677999999999999888999999999999999997555555543 447888887644 3555 3 3899999999
Q ss_pred CCCCceeeee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC----ceEEEecCCC---------cceEEEE
Q 011916 366 TSNGHQLNSV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----AKVSTLTGHS---------LRVLYLA 429 (475)
Q Consensus 366 ~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----~~~~~l~~h~---------~~V~~l~ 429 (475)
+++....... ...-++.++++.|++.-.++ ++-+|.|.+=.+... +....++.|. -+|++|+
T Consensus 162 LRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~--sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 162 LRNLDEPFQRRESSLKYQTRCVALVPNGEGYVV--SSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred cccccchhhhccccceeEEEEEEEecCCCceEE--EeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 9987655533 34568999999998888888 788999988666554 4455666664 3589999
Q ss_pred ECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccC-CccccccC
Q 011916 430 TSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD-TSLWSLGR 471 (475)
Q Consensus 430 ~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~-~~v~s~~~ 471 (475)
|+|-...||||+.||.|.+||+++.+....+.+- ..|-++++
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsf 282 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSF 282 (323)
T ss_pred eccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEe
Confidence 9999999999999999999999999888776554 44544443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-25 Score=215.59 Aligned_cols=270 Identities=20% Similarity=0.346 Sum_probs=228.6
Q ss_pred CEEEEEcCCeEEEEECCCCcE------EEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEecCCC
Q 011916 180 NVLAVGLGTCVYLWTASNSKV------TRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--KRVRTFGGHQ 251 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~------~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--~~~~~~~~h~ 251 (475)
.++++|.||.|++|+.....- ...++ .|.+.|..+....+|+.|++++.|-+|++|+...+ -+..++..|.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~ 117 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHK 117 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhccc
Confidence 388999999999999875433 22222 67899999999999999999999999999999877 6778889999
Q ss_pred CceEEEEe---CCCEEEEEeCCCcEEEEECCCCCc---------cEEEec-CccCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 252 TRAGVLAW---NSRILSSGSRDRNILQHDLRVSSD---------YICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 252 ~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~---------~~~~~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
..|.|+++ +..++++|+-|+.|.+||+..... ....+. ++...|.+++.++.|..+++|+..+.|++
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~ 197 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRL 197 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEE
Confidence 99999998 568999999999999999984321 122333 78899999999999999999999999999
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEE
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~ 397 (475)
||.++.+.+..+.+|...|+.+..++||..++.++ .||+|++||+...+|+.++. |...|.++..+|+-..+++
T Consensus 198 wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYs-- 272 (735)
T KOG0308|consen 198 WDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYS-- 272 (735)
T ss_pred eccccccceeeeeccccceEEEEEcCCCCeEeecC---CCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEe--
Confidence 99999999999999999999999999999888754 69999999999999998874 6667999999999999999
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
|+.||.|+.=|+.+......+-....+|..+..+.+.+-+-+++.|+.|+-|......
T Consensus 273 G~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~ 330 (735)
T KOG0308|consen 273 GGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDI 330 (735)
T ss_pred cCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCcccc
Confidence 9999999999998864443333456678888877655555777889999999887654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-25 Score=196.66 Aligned_cols=248 Identities=18% Similarity=0.316 Sum_probs=205.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------------------CeeeEEecCCCCceEEEEeCC--CEEEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ------------------CKRVRTFGGHQTRAGVLAWNS--RILSS 266 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~~--~~l~s 266 (475)
.|...+.+.+|++||.++|+|+.|..|+|.|++. .-.++++-.|...|.++.|++ .+|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 7899999999999999999999999999999862 135677889999999999986 79999
Q ss_pred EeCCCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE---eccccceeEEEE
Q 011916 267 GSRDRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL---TEHTAAVKAIAW 342 (475)
Q Consensus 267 gs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~ 342 (475)
|++|++|+++|+..... ...+.......|.+|.|+|.|.+|++|....++++||+.+.++...- ..|.+.|+++.+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 99999999999974321 11122234567999999999999999999999999999987765432 358999999999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec
Q 011916 343 SPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 343 sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
++.++ ++++++ .||.|++||--+++|+.++. .++.||+..|..+|+++++ .+.|..+++|.+.++..+.++.
T Consensus 270 s~t~~-lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs--SG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 270 SSTGS-LYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS--SGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred cCCcc-EEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee--cCCcceeeeeeecCCceEEEEe
Confidence 99999 777765 99999999999999999884 4578999999999999999 7799999999999999999887
Q ss_pred CC--Ccc---eEEEEECCCCCEEEEEeC-CCCEEEEecCCCCCCCC
Q 011916 420 GH--SLR---VLYLATSPDGQTIVTGAG-DETLRFWNVFPSLKAPA 459 (475)
Q Consensus 420 ~h--~~~---V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~~~~~~~ 459 (475)
|- +++ -+...|+....+++.-.+ .+.+.-||-.+..+...
T Consensus 345 GAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 345 GAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred cCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 63 222 345668877777776544 46788999888776654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-24 Score=215.46 Aligned_cols=241 Identities=19% Similarity=0.277 Sum_probs=209.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC-KRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
.|....+.|+|.|+|.+|++++.||.|++|+.... +.-.++..+...|.+++-...+|++|+.+++|.+|.+. ....-
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fp-s~~~~ 89 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFP-SGEED 89 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCC-CCCcc
Confidence 67778999999999999999999999999997665 44445555888999999999999999999999999997 44444
Q ss_pred EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
..+....-++.+++++.+|+++|.|+.|-.|++.++........+.+|.++|.+|.|+|.+..|+++. .||.|++||
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss---~dG~v~iw~ 166 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS---CDGKVQIWD 166 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe---cCceEEEEE
Confidence 44555677899999999999999999999999999999999999999999999999999999666654 699999999
Q ss_pred CCCCceeeeec---------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCC
Q 011916 366 TSNGHQLNSVD---------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDG 434 (475)
Q Consensus 366 ~~~~~~~~~~~---------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg 434 (475)
+.++.+...+. ....++.++|+|++..+++ -..++.|.+|+..+++....+.. |...+.+++|+|.|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~--~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV--PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEe--eccCCeEEEEccCCceeheeecccccccceEEEEEcCCC
Confidence 99998776653 1345677999999888888 56899999999999999888865 44559999999999
Q ss_pred CEEEEEeCCCCEEEEecCC
Q 011916 435 QTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~ 453 (475)
+|||+++.||.|.|||+++
T Consensus 245 ~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cEEeeeccCCcEEEEeccc
Confidence 9999999999999999995
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=193.05 Aligned_cols=270 Identities=19% Similarity=0.316 Sum_probs=219.7
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeC---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDL---GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~---~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
-+....|.|. +++.....+.++.|+.+++.+.+...+ .....|.|++|.++|+ +++|..+|.|.||+..+.+..
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~ 280 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRIS 280 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEE
Confidence 3556888884 788888899999999999987766443 3347899999999997 789999999999999988888
Q ss_pred EEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCc---------------------------------------c
Q 011916 245 RTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSD---------------------------------------Y 284 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~---------------------------------------~ 284 (475)
+....|.+.|.+++. ....|++|+.|+.|..||-.-... .
T Consensus 281 k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f 360 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGF 360 (626)
T ss_pred eEeeecCCceEEEEEecCccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCc
Confidence 888899999999998 334555599999999998421110 0
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
.....+|..+...++.+|+.+++++++.|+.+++|+ ..+++.... ...++.++.|+|.| .++. |+..|...+.
T Consensus 361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg--~va~--Gt~~G~w~V~ 433 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSG--VVAV--GTATGRWFVL 433 (626)
T ss_pred eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcc--eEEE--eeccceEEEE
Confidence 122346788899999999999999999999999999 444444432 46788999999999 4555 4599999999
Q ss_pred ECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEEec-CCCcceEEEEECCCCCEEEEEeC
Q 011916 365 NTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVSTLT-GHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 365 d~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~l~-~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
|+.+...+.......++..+.|+|+|.+|++ |+.|+.|+||.+.... ...... .|..+|+.|.||+|+++|.+-+.
T Consensus 434 d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAv--gs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 434 DTETQDLVTIHTDNEQLSVVRYSPDGAFLAV--GSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred ecccceeEEEEecCCceEEEEEcCCCCEEEE--ecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccC
Confidence 9999777777666899999999999999999 9999999999986543 332222 24488999999999999999999
Q ss_pred CCCEEEE
Q 011916 443 DETLRFW 449 (475)
Q Consensus 443 Dg~I~iW 449 (475)
|-.|.+|
T Consensus 512 d~eiLyW 518 (626)
T KOG2106|consen 512 DYEILYW 518 (626)
T ss_pred ceEEEEE
Confidence 9999999
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-25 Score=214.60 Aligned_cols=238 Identities=20% Similarity=0.334 Sum_probs=206.1
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEECCCCe------eeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC-c
Q 011916 214 SVQWT-REGSYISVGTNLGQVQVWDGTQCK------RVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS-D 283 (475)
Q Consensus 214 ~v~~s-pdg~~la~g~~dg~v~iwd~~~~~------~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~-~ 283 (475)
.+..+ |.++||++|+.||.|++|++.... .+..++.|...|..+.. +++.|++++.|-+|++|+..... -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 33443 467889999999999999986432 36678899999998877 67899999999999999998554 5
Q ss_pred cEEEecCccCCEEEEEE-cCCCCEEEEEeCCCcEEEEECCCCc--eeE--------EEe-ccccceeEEEECCCCCcEEE
Q 011916 284 YICKLAGHKSEVCGLKW-SHDDRELASGGNDNQLLVWNQHSQQ--PTL--------RLT-EHTAAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~-s~~~~~lasg~~Dg~I~iwd~~~~~--~~~--------~~~-~h~~~v~~l~~sp~~~~ll~ 351 (475)
+...+..|...|.|+++ -++..++|+||-|+.|.+||+.++. .+. .+. ++...|.+++.++.|. +++
T Consensus 109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~iv 187 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIV 187 (735)
T ss_pred hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEE
Confidence 67788999999999999 7788899999999999999999772 222 222 6788999999999985 777
Q ss_pred EecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEE
Q 011916 352 SGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 352 sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
+|+ ..+.|++||.++++.+..+ .|...|..+..++||..+++ +++||.|++||+....++.++..|...|+++..
T Consensus 188 sGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls--~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 188 SGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLS--ASSDGTIRLWDLGQQRCLATYIVHKEGVWALQS 263 (735)
T ss_pred ecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEee--cCCCceEEeeeccccceeeeEEeccCceEEEee
Confidence 765 8999999999999888777 57788999999999999999 889999999999999999999999999999999
Q ss_pred CCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 431 SPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 431 spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+|+=..+++|+.||.|..=|+....+
T Consensus 264 ~~sf~~vYsG~rd~~i~~Tdl~n~~~ 289 (735)
T KOG0308|consen 264 SPSFTHVYSGGRDGNIYRTDLRNPAK 289 (735)
T ss_pred CCCcceEEecCCCCcEEecccCCchh
Confidence 99999999999999999999988543
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-22 Score=174.64 Aligned_cols=248 Identities=20% Similarity=0.316 Sum_probs=204.8
Q ss_pred EEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------C---------eeeEEecCCCCceEEEEeC--CCE
Q 011916 201 TRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ------C---------KRVRTFGGHQTRAGVLAWN--SRI 263 (475)
Q Consensus 201 ~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~------~---------~~~~~~~~h~~~v~~l~~~--~~~ 263 (475)
..+..++....|.+++|+|.|.+.|+|++..+++|-.... + -..+.-+.|.+.|.|.+|+ |.+
T Consensus 24 ~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~gel 103 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGEL 103 (350)
T ss_pred EEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCe
Confidence 3344446678899999999999999999999998864321 1 0112234688999999995 799
Q ss_pred EEEEeCCCcEEEEECCCCCc----cEEEecCccCCEEEEEEcC----CCCEEEEEe-CCCcEEEEECCCCceeEEEeccc
Q 011916 264 LSSGSRDRNILQHDLRVSSD----YICKLAGHKSEVCGLKWSH----DDRELASGG-NDNQLLVWNQHSQQPTLRLTEHT 334 (475)
Q Consensus 264 l~sgs~dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~s~----~~~~lasg~-~Dg~I~iwd~~~~~~~~~~~~h~ 334 (475)
|++|+.|++|++........ .-..+..|.+.|..++|-. .+.+|++++ .|..|++-|...++..+.+.+|.
T Consensus 104 iatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght 183 (350)
T KOG0641|consen 104 IATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT 183 (350)
T ss_pred EEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence 99999999999987753221 2245677999999999965 355788765 46788999999999999999999
Q ss_pred cceeEE-EECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--------CCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 335 AAVKAI-AWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--------GSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 335 ~~v~~l-~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
+-|.++ .|+ ..++++|+ .|.+|++||++-..++..+.. .+.|..++..|.|+.|++ |..|....
T Consensus 184 ghilalyswn---~~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s--g~~dssc~ 256 (350)
T KOG0641|consen 184 GHILALYSWN---GAMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS--GHADSSCM 256 (350)
T ss_pred ccEEEEEEec---CcEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee--ccCCCceE
Confidence 998776 454 33788765 999999999999999888742 257999999999999999 88999999
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+||++.+..+..+..|...|.++.|+|.-.+|++++.|..|++=|+....
T Consensus 257 lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdl 306 (350)
T KOG0641|consen 257 LYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDL 306 (350)
T ss_pred EEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccch
Confidence 99999999999999999999999999999999999999999999997653
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.1e-23 Score=184.14 Aligned_cols=260 Identities=15% Similarity=0.215 Sum_probs=208.7
Q ss_pred ceeEEecCC--CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 170 YLNLVDWSS--QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 170 ~v~~l~ws~--~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
.+..+.|++ +.+|+++.||.+++|++........+ .|..++.+.+|.+ ...+++|+-||.|+.+|+.++... .+
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~i 90 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QI 90 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-ee
Confidence 466788886 47888899999999999988655555 6889999999986 567999999999999999887654 45
Q ss_pred cCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 248 GGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 248 ~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
..|...|.|+... ...+++|+.|++|++||.+. ......+. ....|.++.. .|+.|++|+.|..|.+||+++..
T Consensus 91 gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~-~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 91 GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN-KVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred ccCCCceEEEEeeccCCeEEEcccCccEEEEeccc-cccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 6799999999996 68999999999999999984 33333333 2347888876 47799999999999999999876
Q ss_pred eeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce----eeeec----------CCCCeeEEEEcCC
Q 011916 326 PTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ----LNSVD----------TGSQVCNLAWSKN 389 (475)
Q Consensus 326 ~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~----~~~~~----------~~~~v~~l~~s~~ 389 (475)
...+.. ..+..+++|++-|++..++++. -||.|.+=.+...+. ...++ ...+|.+++|+|-
T Consensus 167 ~~~q~reS~lkyqtR~v~~~pn~eGy~~sS---ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~ 243 (323)
T KOG1036|consen 167 EPFQRRESSLKYQTRCVALVPNGEGYVVSS---IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPI 243 (323)
T ss_pred chhhhccccceeEEEEEEEecCCCceEEEe---ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccc
Confidence 544332 2456789999999887777643 799988765554421 11121 1247999999999
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
.+.+++ |+.||.|.+||..+.+.+..+......|..++|+.||..||+++.
T Consensus 244 ~~tfaT--gGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 244 HGTFAT--GGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cceEEe--cCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 999999 999999999999999999999888888999999999999999864
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=182.65 Aligned_cols=230 Identities=19% Similarity=0.350 Sum_probs=201.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|..+++.|.++.+|.+|.+++.|.++.||-..+|+.+.++.+|.+.|+|+.. +...+++|+.|.++++||+. .++.
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~-tGk~ 86 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE-TGKQ 86 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC-CCcE
Confidence 89999999999999999999999999999999999999999999999999886 46899999999999999999 5666
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECC-------CCceeEEEeccccceeEEEECCCCCcEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGN-----DNQLLVWNQH-------SQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~-----Dg~I~iwd~~-------~~~~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
+..+. ....|..+.|+.+|++++.... .+.|.++|++ ..++...+..+...++.+.|.|-++.|++
T Consensus 87 la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~- 164 (327)
T KOG0643|consen 87 LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIA- 164 (327)
T ss_pred EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEE-
Confidence 66665 4678999999999998887654 4679999998 45678888889999999999999997666
Q ss_pred ecCCCCCeEEEEECCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEE
Q 011916 353 GGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 353 g~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
|-.||.|.+||+++|+.+..- .|...|+.++++++..++++ ++.|.+-++||+.+.+.+.++. -..+|++.++
T Consensus 165 --Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT--~s~Dttakl~D~~tl~v~Kty~-te~PvN~aai 239 (327)
T KOG0643|consen 165 --GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT--GSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAI 239 (327)
T ss_pred --ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe--cccCccceeeeccceeeEEEee-ecccccceec
Confidence 338999999999998766544 47789999999999999999 8999999999999999999887 4568999999
Q ss_pred CCCCCEEEEEeCCC
Q 011916 431 SPDGQTIVTGAGDE 444 (475)
Q Consensus 431 spdg~~l~s~s~Dg 444 (475)
+|....++.|+...
T Consensus 240 sP~~d~VilgGGqe 253 (327)
T KOG0643|consen 240 SPLLDHVILGGGQE 253 (327)
T ss_pred ccccceEEecCCce
Confidence 99887777776543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-23 Score=186.92 Aligned_cols=240 Identities=23% Similarity=0.324 Sum_probs=187.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------------------------------------eeEEe---
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK------------------------------------RVRTF--- 247 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~------------------------------------~~~~~--- 247 (475)
+|.+.|++++|+.||++||+++.|++|+||++.... .+..+
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~ 163 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLV 163 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEee
Confidence 899999999999999999999999999999976411 01111
Q ss_pred --------------------cCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 248 --------------------GGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 248 --------------------~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
+.|...+..+-. ++.+|++++.|..|.+|+++ ++.+..+......-+..+.||+|+
T Consensus 164 K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk--Gq~L~~idtnq~~n~~aavSP~GR 241 (420)
T KOG2096|consen 164 KKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK--GQLLQSIDTNQSSNYDAAVSPDGR 241 (420)
T ss_pred ecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC--CceeeeeccccccccceeeCCCCc
Confidence 012222333322 35789999999999999997 677777777777778889999999
Q ss_pred EEEEEeCCCcEEEEECC---CC-----ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC----C---c
Q 011916 306 ELASGGNDNQLLVWNQH---SQ-----QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN----G---H 370 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~---~~-----~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~----~---~ 370 (475)
++|+++-.-.|++|..- .| ..+..+.+|.++|..++|+++...+++.. .||++++||+.- + +
T Consensus 242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS---kDG~wriwdtdVrY~~~qDpk 318 (420)
T KOG2096|consen 242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS---KDGKWRIWDTDVRYEAGQDPK 318 (420)
T ss_pred EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe---cCCcEEEeeccceEecCCCch
Confidence 99999999999999863 22 34668899999999999999998766654 899999999852 1 1
Q ss_pred eeeee-----cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-CCCcceEEEEECCCCCEEEEEeCCC
Q 011916 371 QLNSV-----DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-GHSLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 371 ~~~~~-----~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
.++.. ..++..+.+..+|.|+.|++++| ..|.+|..++++...+++ .|...|.+++|+++|++++|++ |.
T Consensus 319 ~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g---s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr 394 (420)
T KOG2096|consen 319 ILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG---SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR 394 (420)
T ss_pred HhhcCCcchhhcCCCceEEEeCCCCcEEEeecC---CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence 22222 23456679999999999999654 469999999988877775 4999999999999999999985 77
Q ss_pred CEEEEecCCCC
Q 011916 445 TLRFWNVFPSL 455 (475)
Q Consensus 445 ~I~iW~~~~~~ 455 (475)
.+++..-.++.
T Consensus 395 ~vrv~~ntpg~ 405 (420)
T KOG2096|consen 395 YVRVIRNTPGW 405 (420)
T ss_pred eeeeecCCCch
Confidence 88887644443
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=204.99 Aligned_cols=275 Identities=21% Similarity=0.310 Sum_probs=210.4
Q ss_pred CCEEEEEc-CCeEEEEECCCCcEE-----EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--ecCC
Q 011916 179 QNVLAVGL-GTCVYLWTASNSKVT-----RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT--FGGH 250 (475)
Q Consensus 179 ~~~la~~~-~~~V~lw~~~~~~~~-----~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~--~~~h 250 (475)
..+|+++. +|.|.++|....... ...-+.|...|..+.|.|....|++++.|.++++||+++.+++.. +.+|
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH 143 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGH 143 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeeccc
Confidence 36788777 799999998765443 111237899999999999767899999999999999999998877 8899
Q ss_pred CCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCc--------------------------cEEEecCccCCEEE---E
Q 011916 251 QTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSD--------------------------YICKLAGHKSEVCG---L 298 (475)
Q Consensus 251 ~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~--------------------------~~~~~~~h~~~V~~---l 298 (475)
...|.+++| ++..|++|++||.|.|||++.... .+....++...|.+ +
T Consensus 144 ~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTv 223 (720)
T KOG0321|consen 144 TGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTV 223 (720)
T ss_pred ccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEE
Confidence 999999999 578999999999999999985441 01112234445555 5
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCCCceeEE--------Eecc---ccceeEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 299 KWSHDDRELASGGN-DNQLLVWNQHSQQPTLR--------LTEH---TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 299 ~~s~~~~~lasg~~-Dg~I~iwd~~~~~~~~~--------~~~h---~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.+..|...||+++. |+.|+|||++....... +..| ...+.++.....|.+|++++ .|+.|++||+
T Consensus 224 v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC---tD~sIy~ynm 300 (720)
T KOG0321|consen 224 VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC---TDNSIYFYNM 300 (720)
T ss_pred EEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe---cCCcEEEEec
Confidence 56678889999887 99999999996543221 2223 34577888888899999988 5999999999
Q ss_pred CCCce--eeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEEecCCCcceEEEEECCC-CCEEEE
Q 011916 367 SNGHQ--LNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLATSPD-GQTIVT 439 (475)
Q Consensus 367 ~~~~~--~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~spd-g~~l~s 439 (475)
.+-.. +..+.+ ...-..-..+|++.++++ |+.|.+.++|.+.+.+ ....+.+|.-.|++++|.|. -.-++|
T Consensus 301 ~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~S--gSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 301 RSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLS--GSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred cccCcCchhhccCcccceeeeeeecCCCCceEec--cCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 76432 222221 112233457899999999 9999999999998764 45667899999999999883 335778
Q ss_pred EeCCCCEEEEecCCCCCCC
Q 011916 440 GAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~~~~~ 458 (475)
++.|-.++||++..+....
T Consensus 379 cSdD~~~kiW~l~~~l~e~ 397 (720)
T KOG0321|consen 379 CSDDFRVKIWRLSNGLEEI 397 (720)
T ss_pred eccCcceEEEeccCchhhc
Confidence 8999999999997766544
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=208.99 Aligned_cols=266 Identities=18% Similarity=0.273 Sum_probs=216.3
Q ss_pred eeEEecCCC--CEEEEEcCCeEEEEECCCC-cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 171 LNLVDWSSQ--NVLAVGLGTCVYLWTASNS-KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~~~~V~lw~~~~~-~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
.+.++|.++ .+++++.++.|++|+.... +....+.. ++..|.+++. ++.+|++|+.+++|.+|.+..++.-..+
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~-~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDI-SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhc-cCceeEEEee--cccceEEeeccceEEEeeCCCCCcccee
Confidence 556777765 6888888999999998776 44444432 5677777765 4569999999999999999888776666
Q ss_pred cCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 248 GGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 248 ~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
....-++.+++++ |.+++.|+.|-.|++.++. .......+.+|.++|.++.|+|++++||+.+-||.|+|||+.++.
T Consensus 93 ~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~-D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 93 ARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLD-DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGI 171 (933)
T ss_pred eeeeccceEEEEecCCcEEEeecCceeEEEEecc-ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccch
Confidence 6667788888885 5799999999999999998 566778899999999999999999999999999999999999887
Q ss_pred eeEEEec--------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeeEEEEcCCCCeEE
Q 011916 326 PTLRLTE--------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---TGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 326 ~~~~~~~--------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~ 394 (475)
...++.+ ....+..++|+|++..+++.+ .|+.|++|+..+++....+. +.+.++.++|+|+|+||+
T Consensus 172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred hhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 7665543 134567899999988788876 69999999999999888774 334599999999999999
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEE
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
+ ++.+|+|.|||..+.+. ......|.+++|.|+..-|-....-|...+|
T Consensus 249 A--s~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 249 A--STLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred e--eccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 9 88999999999988332 2234579999999998866655555555554
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=197.44 Aligned_cols=244 Identities=23% Similarity=0.362 Sum_probs=210.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE----E-------------e-cCCCCceEEEEe--CCCEEEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR----T-------------F-GGHQTRAGVLAW--NSRILSS 266 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~----~-------------~-~~h~~~v~~l~~--~~~~l~s 266 (475)
.|.-+|++++++|++++.++++.+|+|.=|++.+++..+ . - ++|...+.+++. ++.+|++
T Consensus 140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat 219 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT 219 (479)
T ss_pred cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence 688899999999999999999999999999998876431 1 0 267778888887 5899999
Q ss_pred EeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCC
Q 011916 267 GSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 267 gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 346 (475)
|+.|..|.||+.+ ....+..+.+|.+.|.+++|-.....|++++.|..|++|++.....+.++.+|...|.+|....-+
T Consensus 220 gg~d~~v~Iw~~~-t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re 298 (479)
T KOG0299|consen 220 GGRDRHVQIWDCD-TLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE 298 (479)
T ss_pred cCCCceEEEecCc-ccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhccc
Confidence 9999999999999 667778899999999999999888899999999999999999998899999999999999988777
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC-C----
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG-H---- 421 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h---- 421 (475)
+ ++++|+ .|+++++|++.....+....+.+.+-|++|-.+ .++++ |+++|.|.+|++...+++.+... |
T Consensus 299 R-~vtVGg--rDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~Hfvs--GSdnG~IaLWs~~KKkplf~~~~AHgv~~ 372 (479)
T KOG0299|consen 299 R-CVTVGG--RDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVS--GSDNGSIALWSLLKKKPLFTSRLAHGVIP 372 (479)
T ss_pred c-eEEecc--ccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceee--ccCCceEEEeeecccCceeEeeccccccC
Confidence 6 777776 999999999966666655667778999998865 45666 99999999999998888876642 2
Q ss_pred -------CcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 422 -------SLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 422 -------~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
...|++|+..|...++++|+.+|.|++|.+.++...
T Consensus 373 ~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~ 415 (479)
T KOG0299|consen 373 ELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA 415 (479)
T ss_pred CccccccccceeeeEecccCceEEecCCCCceEEEEecCCccc
Confidence 227899999999999999999999999999988543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=213.59 Aligned_cols=238 Identities=18% Similarity=0.347 Sum_probs=193.2
Q ss_pred eeEEecCC--CCEEEE-EcCCeEEEEECCC---CcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee
Q 011916 171 LNLVDWSS--QNVLAV-GLGTCVYLWTASN---SKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 171 v~~l~ws~--~~~la~-~~~~~V~lw~~~~---~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
++.+.|+. ++++|. +..|.|.+||+.. .+....+. +|...|.++.|++ ...+|++|+.||+|++||+...+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 55688985 255555 5589999999987 33333343 8999999999998 557899999999999999999999
Q ss_pred eEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 244 VRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
..++.+....|..+.|. +.+++++...|.+++||+|....+..++.+|.+.|.|+.|+|++.+||+||.|+.|+|||
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 99999999999999995 589999999999999999998999999999999999999999999999999999999999
Q ss_pred CCCCce--eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeee-cCCCCeeEEEEcCCCCeEEEE
Q 011916 321 QHSQQP--TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LNSV-DTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 321 ~~~~~~--~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~~~-~~~~~v~~l~~s~~~~~l~~~ 396 (475)
+.+.+. +.++. ..++|..|+|-|...+.+++++--.|-.|+|||++..-. ...+ .|...++.++|......++-.
T Consensus 249 ~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s 327 (839)
T KOG0269|consen 249 MTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWS 327 (839)
T ss_pred ccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEe
Confidence 986654 33332 457899999999999988887655789999999987543 3344 567788889997643433332
Q ss_pred EecCCCeEEEEECCC
Q 011916 397 HGYSQNQIMVWKYPS 411 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~ 411 (475)
++.||.|..-.+++
T Consensus 328 -~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 328 -CSKDGTVLQHLFKN 341 (839)
T ss_pred -ecCccHHHHhhhhc
Confidence 66788776554443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=181.68 Aligned_cols=233 Identities=21% Similarity=0.402 Sum_probs=188.5
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCcE-EEEeeC-CCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCee--eEEe
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSKV-TRLCDL-GPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQCKR--VRTF 247 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~~-~~~~~~-~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~~~~--~~~~ 247 (475)
+++...++++++.|+.|+|+....... ..+.++ +|.++|..++|.. -|.+||+++.||.|.||.-++++- ....
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhh
Confidence 667788999999999999999987653 333333 8999999999976 899999999999999999887743 3455
Q ss_pred cCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCc--cEEEecCccCCEEEEEEcCC---C-----------CEE
Q 011916 248 GGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSD--YICKLAGHKSEVCGLKWSHD---D-----------REL 307 (475)
Q Consensus 248 ~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~~---~-----------~~l 307 (475)
..|...|++++|- |-.|++++.||.|.|.+++..+. .......|.-.|++++|.|- | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 6899999999994 46899999999999999986532 33456789999999999985 4 569
Q ss_pred EEEeCCCcEEEEECCCCc--eeEEEeccccceeEEEECCCC---CcEEEEecCCCCCeEEEEECCCCcee--eee--cCC
Q 011916 308 ASGGNDNQLLVWNQHSQQ--PTLRLTEHTAAVKAIAWSPHQ---SSLLASGGGTADRCIRFWNTSNGHQL--NSV--DTG 378 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~---~~ll~sg~Gs~d~~I~iwd~~~~~~~--~~~--~~~ 378 (475)
++|+.|+.|+||+..++. ...++.+|.+.|+.++|+|.- +..+++++ .||++.||-....... .++ +..
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S--qDg~viIwt~~~e~e~wk~tll~~f~ 256 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS--QDGTVIIWTKDEEYEPWKKTLLEEFP 256 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec--CCCcEEEEEecCccCcccccccccCC
Confidence 999999999999998753 334588999999999999964 44577765 9999999987632111 111 245
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 379 SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
..+..+.|+..|+.|++ ++.|+.|.+|.-.
T Consensus 257 ~~~w~vSWS~sGn~LaV--s~GdNkvtlwke~ 286 (299)
T KOG1332|consen 257 DVVWRVSWSLSGNILAV--SGGDNKVTLWKEN 286 (299)
T ss_pred cceEEEEEeccccEEEE--ecCCcEEEEEEeC
Confidence 67999999999999999 7789999999854
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=191.87 Aligned_cols=236 Identities=15% Similarity=0.224 Sum_probs=204.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
...++++...+....+++|+.|..+.++|...++.+.+++||...|+.+.+++ ..+++++.|..|+||.... .....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-~s~~~ 297 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-SSEPT 297 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc-ccCcc
Confidence 45678888888778899999999999999999999999999999999999975 7889999999999999974 44667
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec--cccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE--HTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
....|..+|+.+..+|.|.||+++++|++..+.|++++..+..... ..-.+++++|+|||- |+.+ |+.|+.|+||
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgt--gt~d~~vkiw 374 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGT--GTPDGVVKIW 374 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEec--cCCCceEEEE
Confidence 7888999999999999999999999999999999999988776554 234589999999997 6666 4599999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC-cceEEEEECCCCCEEEEEeC
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS-LRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~s~ 442 (475)
|+..+..+..+. |.++|..++|+.+|-+|++ +.+|+.|++||++..+...++.-.+ ..|..+.|.+.|++|+.++.
T Consensus 375 dlks~~~~a~Fpght~~vk~i~FsENGY~Lat--~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 375 DLKSQTNVAKFPGHTGPVKAISFSENGYWLAT--AADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred EcCCccccccCCCCCCceeEEEeccCceEEEE--EecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecc
Confidence 999999888885 7789999999999999999 7789999999999888777776432 36999999999999999977
Q ss_pred CCCEEEEe
Q 011916 443 DETLRFWN 450 (475)
Q Consensus 443 Dg~I~iW~ 450 (475)
|=.|++++
T Consensus 453 ~l~Vy~~~ 460 (506)
T KOG0289|consen 453 DLQVYICK 460 (506)
T ss_pred eeEEEEEe
Confidence 64444444
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-23 Score=192.39 Aligned_cols=275 Identities=20% Similarity=0.387 Sum_probs=205.9
Q ss_pred CCEEEEEcC--C----eEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCe---
Q 011916 179 QNVLAVGLG--T----CVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-------EGSYISVGTNLGQVQVWDGTQCK--- 242 (475)
Q Consensus 179 ~~~la~~~~--~----~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-------dg~~la~g~~dg~v~iwd~~~~~--- 242 (475)
++++.++.. + .||||+-....+-...++--...-.|++|.. .|+|+|+|+.|-.|.|||+.-..
T Consensus 137 DnlIl~ar~eddvs~LEvYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~ 216 (463)
T KOG0270|consen 137 DNLILCARNEDDVSYLEVYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVL 216 (463)
T ss_pred CcEEEEeeccCCceEEEEEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccc
Confidence 577777652 2 5788876653322111111123446777753 36899999999999999975211
Q ss_pred ------------------eeEEecCCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEc
Q 011916 243 ------------------RVRTFGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS 301 (475)
Q Consensus 243 ------------------~~~~~~~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 301 (475)
.-....+|+..|.+|+||. +.|++|+.|.+|++||+. .+++...+..|...|.++.|+
T Consensus 217 P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~-~g~p~~s~~~~~k~Vq~l~wh 295 (463)
T KOG0270|consen 217 PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVD-TGKPKSSITHHGKKVQTLEWH 295 (463)
T ss_pred cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcC-CCCcceehhhcCCceeEEEec
Confidence 0011337999999999974 899999999999999999 778888899999999999999
Q ss_pred C-CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeec-CC
Q 011916 302 H-DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQLNSVD-TG 378 (475)
Q Consensus 302 ~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~~-~~ 378 (475)
| ....|++|+.|++|.+.|++........-...+.|..++|.|.....+.++. .||.++-+|++.. +++.++. |.
T Consensus 296 ~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd 373 (463)
T KOG0270|consen 296 PYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHD 373 (463)
T ss_pred CCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEecc
Confidence 9 6679999999999999999953332222235678999999999998888864 9999999999875 7887774 78
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEecCCCcceEEEEECCCCC-EEEEEeCCCCEEEEecCCCC
Q 011916 379 SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK--VSTLTGHSLRVLYLATSPDGQ-TIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW~~~~~~ 455 (475)
..|.+|+++..-..++++ ++.++.|++|++..... +..-.-.-++..|+++.|+-. +|+.|+..+.++|||+....
T Consensus 374 ~~ISgl~~n~~~p~~l~t-~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 374 DEISGLSVNIQTPGLLST-ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred CCcceEEecCCCCcceee-ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 899999999998888877 77999999999865433 211111223466777777654 56677778889999998765
Q ss_pred CC
Q 011916 456 KA 457 (475)
Q Consensus 456 ~~ 457 (475)
..
T Consensus 453 ~V 454 (463)
T KOG0270|consen 453 PV 454 (463)
T ss_pred hH
Confidence 43
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-23 Score=204.38 Aligned_cols=248 Identities=27% Similarity=0.402 Sum_probs=207.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE--EecCCCCceEE-EEeC---CCEEEEEeCCCcEEEEECCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR--TFGGHQTRAGV-LAWN---SRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~--~~~~h~~~v~~-l~~~---~~~l~sgs~dg~I~iwd~~~ 280 (475)
+|...|..++..+. ..++.++.||++++|+-...+.+. .+.+|.+.|.. +++. +..|++|+.|++|.+|...
T Consensus 12 gH~~DVr~v~~~~~-~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~- 89 (745)
T KOG0301|consen 12 GHKSDVRAVAVTDG-VCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLS- 89 (745)
T ss_pred cCccchheeEecCC-eEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecC-
Confidence 88999999887654 479999999999999976555443 46678887776 7773 4679999999999999998
Q ss_pred CCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCe
Q 011916 281 SSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC 360 (475)
Q Consensus 281 ~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~ 360 (475)
...+...+.+|++.||++....++. +++|+.|.++++|... ++...+.+|.+.|.+++.-|++ .+++|+ .|.+
T Consensus 90 ~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~--~~vTgs--aDKt 162 (745)
T KOG0301|consen 90 QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN--TYVTGS--ADKT 162 (745)
T ss_pred CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC--cEEecc--Ccce
Confidence 6788899999999999999888886 9999999999999865 4556689999999999999998 455554 8999
Q ss_pred EEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEE
Q 011916 361 IRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVT 439 (475)
Q Consensus 361 I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 439 (475)
|++|.- ++.++++. |...|..+++-+++..+- ++.||.|++|++ +++.+.++.+|+.-|+++....++..+++
T Consensus 163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flS---csNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLS---CSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred eeeccC--CchhhhhccchhheeeeEEecCCCeEe---ecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEE
Confidence 999985 67777774 678899999998876554 458999999999 89999999999999999998888899999
Q ss_pred EeCCCCEEEEecCCCCCCCCccc-CCccccccC
Q 011916 440 GAGDETLRFWNVFPSLKAPALVK-DTSLWSLGR 471 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~~~~~~~~~-~~~v~s~~~ 471 (475)
+++|++++||+.. .+.+.+.. ...+|+..+
T Consensus 237 ~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~ 267 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD--ECVQVITLPTTSIWSAKV 267 (745)
T ss_pred ecCCceEEEeecC--ceEEEEecCccceEEEEE
Confidence 9999999999998 55555444 347887653
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=182.41 Aligned_cols=248 Identities=20% Similarity=0.350 Sum_probs=196.5
Q ss_pred EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEecCCCCceEEEEe-C---CCEEEEEeCCCcEE
Q 011916 202 RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---KRVRTFGGHQTRAGVLAW-N---SRILSSGSRDRNIL 274 (475)
Q Consensus 202 ~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---~~~~~~~~h~~~v~~l~~-~---~~~l~sgs~dg~I~ 274 (475)
+.++..|.+.|..+...--|+.||+++.|++|+|+.+... +++.++.+|.++|..++| + |.+|++++.||.|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 3444478888999888889999999999999999998754 567889999999999999 4 68999999999999
Q ss_pred EEECCCCC-ccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC---ceeEEEeccccceeEEEECCC---
Q 011916 275 QHDLRVSS-DYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQ---QPTLRLTEHTAAVKAIAWSPH--- 345 (475)
Q Consensus 275 iwd~~~~~-~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~---~~~~~~~~h~~~v~~l~~sp~--- 345 (475)
||.-.... ........|...|++++|.|. |-.||+++.||.|.|.+.+.. ........|.-.|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99987431 233446679999999999984 568999999999999998754 122344579999999999986
Q ss_pred CC----------cEEEEecCCCCCeEEEEECCCCce--eeee-cCCCCeeEEEEcCCC----CeEEEEEecCCCeEEEEE
Q 011916 346 QS----------SLLASGGGTADRCIRFWNTSNGHQ--LNSV-DTGSQVCNLAWSKNV----NELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 346 ~~----------~ll~sg~Gs~d~~I~iwd~~~~~~--~~~~-~~~~~v~~l~~s~~~----~~l~~~~g~~dg~I~iwd 408 (475)
|. +-+++|| .|+.|+||+...++- ...+ .|...|..++|.|.- .+|++ ++.||.+.||.
T Consensus 164 g~~~~~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS--~SqDg~viIwt 239 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIAS--CSQDGTVIIWT 239 (299)
T ss_pred ccccccCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEE--ecCCCcEEEEE
Confidence 31 2367766 899999999988632 2223 477889999999965 34555 88999999998
Q ss_pred CCCC--c-eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 409 YPSM--A-KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 409 ~~~~--~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.... + ....++.....+..+.||..|..|+.++.|..|.+|.=..
T Consensus 240 ~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 240 KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 7522 1 1222334567799999999999999999999999997553
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-22 Score=178.89 Aligned_cols=276 Identities=20% Similarity=0.327 Sum_probs=214.6
Q ss_pred CceeEEecCCC---CEEEEEcCCeEEEEECCCCc--------EEEEe------eCCCCCcEEEEEEcC-CCCEEEEEeCC
Q 011916 169 FYLNLVDWSSQ---NVLAVGLGTCVYLWTASNSK--------VTRLC------DLGPGDSVCSVQWTR-EGSYISVGTNL 230 (475)
Q Consensus 169 ~~v~~l~ws~~---~~la~~~~~~V~lw~~~~~~--------~~~~~------~~~~~~~V~~v~~sp-dg~~la~g~~d 230 (475)
-.||.++..+. .+|.++.||.|.+||++... ....+ +.+|.-.|.++.|-| |.-++.+++.|
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD 123 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD 123 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Confidence 34666776653 57888889999999997643 11112 125667899999999 66789999999
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEeCC-----CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS-----RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~-----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
.+++|||..+.+....|+ ..+.|..-+|++ .++++|.+|-.|++.|+. .+.....+.+|.+.|.++.|+|...
T Consensus 124 htlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~-SGs~sH~LsGHr~~vlaV~Wsp~~e 201 (397)
T KOG4283|consen 124 HTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA-SGSFSHTLSGHRDGVLAVEWSPSSE 201 (397)
T ss_pred ceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc-CCcceeeeccccCceEEEEeccCce
Confidence 999999999988887776 345677666643 578888999999999999 7888999999999999999999665
Q ss_pred -EEEEEeCCCcEEEEECCCC-ceeEE--------------EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 306 -ELASGGNDNQLLVWNQHSQ-QPTLR--------------LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 306 -~lasg~~Dg~I~iwd~~~~-~~~~~--------------~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.||+|+.||.|++||++.. .+... -..|.+.|..++|+.++.+++.+| .|..+++|+..+|
T Consensus 202 ~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g---td~r~r~wn~~~G 278 (397)
T KOG4283|consen 202 WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG---TDDRIRVWNMESG 278 (397)
T ss_pred eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc---CccceEEeecccC
Confidence 6889999999999999853 22222 234788999999999999888876 6999999999887
Q ss_pred ceeee-e---cC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 370 HQLNS-V---DT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 370 ~~~~~-~---~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
+.... + -+ .+.-..+. +-+...++. --.++.+.++.+-+++.+..+..|-..|.+.++-|+=+...+|..
T Consensus 279 ~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~--~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~ 355 (397)
T KOG4283|consen 279 RNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVL--FPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDM 355 (397)
T ss_pred cccccccccccccccccceEEEe-ecccceEEE--EecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcccc
Confidence 64322 1 11 11111122 334444444 224589999999999999999999989999999999999999999
Q ss_pred CCCEEEEecC
Q 011916 443 DETLRFWNVF 452 (475)
Q Consensus 443 Dg~I~iW~~~ 452 (475)
|+.|..|-..
T Consensus 356 d~ni~~w~p~ 365 (397)
T KOG4283|consen 356 NGNIYMWSPA 365 (397)
T ss_pred CCcccccccc
Confidence 9999999883
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-23 Score=195.39 Aligned_cols=259 Identities=20% Similarity=0.327 Sum_probs=210.5
Q ss_pred eeEEecCCCC-EEEEEc--CCeEEEEECCCC--cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 171 LNLVDWSSQN-VLAVGL--GTCVYLWTASNS--KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 171 v~~l~ws~~~-~la~~~--~~~V~lw~~~~~--~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
++.+.|+..+ +++++. |..|.+|.-... ++..+-. ...+.-.||+......|+++|+..|.|+|||+....+.+
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k-~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr 115 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRK-LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHR 115 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCccceeec-cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhh
Confidence 5668999886 444433 567888865433 3333222 223355566665666899999999999999999888888
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEEEeCCCcEEEEECC
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQLLVWNQH 322 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~I~iwd~~ 322 (475)
.+++|...|+++.+| ..+|++++..|.|.|..+.+.......-.+..+.|.-+.|++..+ +|.+++.+|.|.+||..
T Consensus 116 ~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~ 195 (673)
T KOG4378|consen 116 FLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQ 195 (673)
T ss_pred hccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEecc
Confidence 899999999999985 589999999999999999854333222233355677999999666 56678999999999999
Q ss_pred CCceeEEEe-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 323 SQQPTLRLT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 323 ~~~~~~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
...+.+.+. .|.++...|+|+|.+..|+++-| .|..|.+||+...+....+....+...++|.++|.+|++ |...
T Consensus 196 g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~a--G~s~ 271 (673)
T KOG4378|consen 196 GMSPIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCA--GNSK 271 (673)
T ss_pred CCCcccchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEe--ecCC
Confidence 888877654 59999999999999999999987 999999999999888888888899999999999999999 9999
Q ss_pred CeEEEEECCCC-ceEEEecCCCcceEEEEECCCC
Q 011916 402 NQIMVWKYPSM-AKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 402 g~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg 434 (475)
|.|..||++.. .++..+..|...|++++|-+..
T Consensus 272 G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 272 GELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999864 6788888999999999997764
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=199.06 Aligned_cols=259 Identities=24% Similarity=0.317 Sum_probs=213.8
Q ss_pred EeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEecC--CCCceEEEEe--CCCEEEEEeCCCcEEE
Q 011916 203 LCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---KRVRTFGG--HQTRAGVLAW--NSRILSSGSRDRNILQ 275 (475)
Q Consensus 203 ~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---~~~~~~~~--h~~~v~~l~~--~~~~l~sgs~dg~I~i 275 (475)
+..+.|++-|.++.++...+++++|+. |.|+|||+... ..+..+.. ....|.++.. +++.|++|+.-.++.|
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsi 491 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSI 491 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeee
Confidence 334578999999999999999999988 88999998643 23333332 2344555444 7899999999999999
Q ss_pred EECCCCCccEE-EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 276 HDLRVSSDYIC-KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 276 wd~~~~~~~~~-~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
||+......+. .+.........++.+||.+..+++..||.|.|||+.+...+..|.+|...+.||..++||..|.+ ||
T Consensus 492 WDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWT-GG 570 (705)
T KOG0639|consen 492 WDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWT-GG 570 (705)
T ss_pred eeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeec-CC
Confidence 99986543332 23333345677899999999999999999999999999999999999999999999999996655 44
Q ss_pred CCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC
Q 011916 355 GTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 434 (475)
-|++|+.||++++..+...+..++|.++..+|++.+|++ |-.++.+.|...... ....+..|+..|.++.|.+.|
T Consensus 571 --lDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlav--GMens~vevlh~skp-~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 571 --LDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAV--GMENSNVEVLHTSKP-EKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred --CccceeehhhhhhhhhhhhhhhhhheecccCCCccceee--ecccCcEEEEecCCc-cceeecccccEEEEEEecccC
Confidence 899999999999999999999999999999999999999 999999999886543 345667799999999999999
Q ss_pred CEEEEEeCCCCEEEEecCCCCCCCCcccCCcccc
Q 011916 435 QTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWS 468 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~s 468 (475)
+++++.+.|..+..|....+...-...+...|.+
T Consensus 646 kwfvStGkDnlLnawrtPyGasiFqskE~SsVls 679 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS 679 (705)
T ss_pred ceeeecCchhhhhhccCccccceeeccccCccee
Confidence 9999999999999999988877665555555543
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-22 Score=180.72 Aligned_cols=279 Identities=15% Similarity=0.217 Sum_probs=214.1
Q ss_pred eeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 171 LNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
.+|+.|+.- .+||+|. +|.|.|||..+..+-+.+. .|-.+|++++||+||+.|++++.|..|.+||+..+.+++.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE
Confidence 678889874 5566555 9999999999988777775 889999999999999999999999999999999999888776
Q ss_pred CCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCcc---CCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 249 GHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHK---SEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 249 ~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
...+|+...|++ +..++.-.+..-.+-++..+.+.+....... ....+..|.+.|+++++|...|.+.++|..
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~ 183 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE 183 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence 567899999964 4444444444455555542221111111111 112223588899999999999999999999
Q ss_pred CCceeEEEeccc-cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-------cee--eee---cCCCCeeEEEEcCC
Q 011916 323 SQQPTLRLTEHT-AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-------HQL--NSV---DTGSQVCNLAWSKN 389 (475)
Q Consensus 323 ~~~~~~~~~~h~-~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-------~~~--~~~---~~~~~v~~l~~s~~ 389 (475)
+.+++..++-.. ..|+.|.++..|+.++. .+.|+.|+.|+++.- +.. +.+ -..-+-.+++|+.+
T Consensus 184 t~e~vas~rits~~~IK~I~~s~~g~~lii---NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 184 TLECVASFRITSVQAIKQIIVSRKGRFLII---NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred hheeeeeeeechheeeeEEEEeccCcEEEE---ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 999988887655 78999999999997777 347999999998621 111 111 12345577889999
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceEEEecCCC-cceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS-LRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
|.++++++ .....++||....|..+..+.|.. .....+.|+|-...+++- ..|.|+||.+...+.
T Consensus 261 geYv~a~s-~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~en 326 (405)
T KOG1273|consen 261 GEYVCAGS-ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVEN 326 (405)
T ss_pred ccEEEecc-ccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEeecccc
Confidence 99998853 467789999999999999999877 567889999999888888 678999999876544
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-23 Score=207.53 Aligned_cols=211 Identities=18% Similarity=0.313 Sum_probs=177.8
Q ss_pred eeeEEec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCC-------------------------------C-----
Q 011916 242 KRVRTFG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVS-------------------------------S----- 282 (475)
Q Consensus 242 ~~~~~~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~-------------------------------~----- 282 (475)
...+.+. .|.+.|+++.| +|++||+||.|+.|+||.+... .
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3444556 89999999999 6899999999999999987640 0
Q ss_pred -----------------------ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeE
Q 011916 283 -----------------------DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKA 339 (475)
Q Consensus 283 -----------------------~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~ 339 (475)
+++..+.+|.+.|..|.||.++ +|++++.|.+|++|++...+++..|. |...|+|
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 1134467899999999999765 99999999999999999999998885 9999999
Q ss_pred EEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec
Q 011916 340 IAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 340 l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
|+|+|-...++++|+ -|++|+||++...+.+...+...-|++++|.|+|++.++ |.-+|.+++|+....+......
T Consensus 415 VaFnPvDDryFiSGS--LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avI--Gt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGS--LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVI--GTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred EEecccCCCcEeecc--cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEE--EEeccEEEEEEccCCeEEEeee
Confidence 999998888888865 999999999999999998898999999999999999999 9999999999998877655443
Q ss_pred ---------CCCcceEEEEECCC-CCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 420 ---------GHSLRVLYLATSPD-GQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 420 ---------~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
.|. +|+++.|.|. ...|++.+.|..|||+|........+
T Consensus 491 I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K 539 (712)
T KOG0283|consen 491 IRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK 539 (712)
T ss_pred EeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh
Confidence 133 7999999974 33566778999999999966554444
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-22 Score=177.35 Aligned_cols=247 Identities=17% Similarity=0.332 Sum_probs=190.6
Q ss_pred EeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeeeEEecCCCCceEEEEe-C---CCEEEEEeCCCcEE
Q 011916 203 LCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ----CKRVRTFGGHQTRAGVLAW-N---SRILSSGSRDRNIL 274 (475)
Q Consensus 203 ~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~----~~~~~~~~~h~~~v~~l~~-~---~~~l~sgs~dg~I~ 274 (475)
.++.+|.+-|.++.|.+.|+.+|+|+.|++|+|||... ..+....+.|.+.|..+.| + |+.+++++.|+++.
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~ 86 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVS 86 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCcee
Confidence 34447889999999999999999999999999999643 3566778899999999999 2 68999999999999
Q ss_pred EEECCCC--------CccEEEecCccCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCC------ceeEEEe-------
Q 011916 275 QHDLRVS--------SDYICKLAGHKSEVCGLKWSH--DDRELASGGNDNQLLVWNQHSQ------QPTLRLT------- 331 (475)
Q Consensus 275 iwd~~~~--------~~~~~~~~~h~~~V~~l~~s~--~~~~lasg~~Dg~I~iwd~~~~------~~~~~~~------- 331 (475)
||.-... -....++....+.|+.++|.| -|-.||+++.||.|+||+.-.. .....+.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 9976211 123455677788999999999 5779999999999999987542 2222222
Q ss_pred ccccceeEEEECCCC--CcEEEEecCCCC-----CeEEEEECCCCc-ee---eee-cCCCCeeEEEEcCCC----CeEEE
Q 011916 332 EHTAAVKAIAWSPHQ--SSLLASGGGTAD-----RCIRFWNTSNGH-QL---NSV-DTGSQVCNLAWSKNV----NELVS 395 (475)
Q Consensus 332 ~h~~~v~~l~~sp~~--~~ll~sg~Gs~d-----~~I~iwd~~~~~-~~---~~~-~~~~~v~~l~~s~~~----~~l~~ 395 (475)
.+.....|+.|+|.. ..+++.|+ .+ +.++||....+. .. .++ ++..+|+.++|.|+- ..|++
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs--~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGS--DEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred cccCcceEEeeccccccCceEEEEc--ccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence 356677899999742 34677764 22 378888765433 22 222 578899999999963 23444
Q ss_pred EEecCCCeEEEEECCC--------------------CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 396 THGYSQNQIMVWKYPS--------------------MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~--------------------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
++.|| |+||++.. -+.+..+.+|.+.|..+.|+-.|..|++.|.||.||+|...-.
T Consensus 245 --A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 245 --ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred --eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhh
Confidence 77888 99999862 1345667789999999999999999999999999999986543
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=191.89 Aligned_cols=247 Identities=19% Similarity=0.251 Sum_probs=204.4
Q ss_pred CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEE
Q 011916 180 NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLA 258 (475)
Q Consensus 180 ~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~ 258 (475)
.++++.. -..|.+|.+.......... --.+.|.+++-+|+|.+|+.|+..|.|++|.+.+|.++..+..|-..|+|+.
T Consensus 52 yllsaq~~rp~l~vw~i~k~~~~~q~~-v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~ 130 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILKKDQVVQYI-VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLK 130 (476)
T ss_pred heeeecccCccccccccCchhhhhhhc-ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEE
Confidence 3444444 3478889887655444221 2367899999999999999999999999999999999999999999999999
Q ss_pred e--CCCEEEEEeCCCcEEEEECCC--------CCccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCce
Q 011916 259 W--NSRILSSGSRDRNILQHDLRV--------SSDYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 259 ~--~~~~l~sgs~dg~I~iwd~~~--------~~~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
| |+.+|++|+.||.|.+|++.. ...+...+..|.-.|+++...+. ...|++++.|.++++||+..+..
T Consensus 131 fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~L 210 (476)
T KOG0646|consen 131 FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVL 210 (476)
T ss_pred EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecccee
Confidence 9 579999999999999998731 23567889999999999998774 35899999999999999999988
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----------------eeeee-cCC--CCeeEEEEc
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH----------------QLNSV-DTG--SQVCNLAWS 387 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~----------------~~~~~-~~~--~~v~~l~~s 387 (475)
+.++. ....+.+++..|-+..+++ |+.+|.|.+.++.+.. .+..+ .+. .+|+|++++
T Consensus 211 Llti~-fp~si~av~lDpae~~~yi---Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais 286 (476)
T KOG0646|consen 211 LLTIT-FPSSIKAVALDPAERVVYI---GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS 286 (476)
T ss_pred eEEEe-cCCcceeEEEcccccEEEe---cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEe
Confidence 87775 5788999999999986666 5699999998875432 11111 233 489999999
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 388 KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
-||..|++ |+.||+++|||+.+.+++.++..-.++|+.+.+.|-
T Consensus 287 ~DgtlLlS--Gd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 287 TDGTLLLS--GDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred cCccEEEe--eCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 99999999 999999999999999999988877889999998664
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-21 Score=182.63 Aligned_cols=281 Identities=17% Similarity=0.238 Sum_probs=220.0
Q ss_pred CCCceeEEecCCC---CEEEEEc---CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 011916 167 DDFYLNLVDWSSQ---NVLAVGL---GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 167 ~d~~v~~l~ws~~---~~la~~~---~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~ 240 (475)
.+--|.|++|++- .++++-. +.-+.+||...+....-.. ..++.|....|+|.+..|++....|.+.+|+.+.
T Consensus 153 f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk-~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~ 231 (626)
T KOG2106|consen 153 FDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK-TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRG 231 (626)
T ss_pred ccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce-eccceEEEEEeccCCCcEEEEeCCceEEEEEccC
Confidence 3455899999962 4555543 3468999998776544332 3467889999999776666666679999999998
Q ss_pred CeeeEE---ecCC-CCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCc
Q 011916 241 CKRVRT---FGGH-QTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQ 315 (475)
Q Consensus 241 ~~~~~~---~~~h-~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~ 315 (475)
+...+. ++.+ ...|.|++|. +.-+++|..+|.|.||+.. .....+....|.+.|.+++.-.+|.+| +|+.|..
T Consensus 232 ~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~-~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRk 309 (626)
T KOG2106|consen 232 GSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKG-TNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRK 309 (626)
T ss_pred CceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCC-CceEEeEeeecCCceEEEEEecCccEe-ecCccce
Confidence 866554 4433 3579999995 4678999999999999997 444444555999999999999999655 4999999
Q ss_pred EEEEECCCCc----------------------------------------eeEEEeccccceeEEEECCCCCcEEEEecC
Q 011916 316 LLVWNQHSQQ----------------------------------------PTLRLTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 316 I~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
|..||-.-.+ ......+|......++.+|+...++++|
T Consensus 310 i~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g-- 387 (626)
T KOG2106|consen 310 IILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG-- 387 (626)
T ss_pred EEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeecc--
Confidence 9999932100 0112345778889999999988666665
Q ss_pred CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC
Q 011916 356 TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
.|+.+++|+ ..+++.......++.++.|+|.| .+++ |...|...+.|.++...+..-+. ..++..+.|+|+|.
T Consensus 388 -qdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~--Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~ 460 (626)
T KOG2106|consen 388 -QDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAV--GTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA 460 (626)
T ss_pred -CcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEE--eeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC
Confidence 799999999 67777888888999999999999 7777 99999999999999666655555 88999999999999
Q ss_pred EEEEEeCCCCEEEEecCCCCCCCC
Q 011916 436 TIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+||.|+.|+.|+||.+........
T Consensus 461 ~lAvgs~d~~iyiy~Vs~~g~~y~ 484 (626)
T KOG2106|consen 461 FLAVGSHDNHIYIYRVSANGRKYS 484 (626)
T ss_pred EEEEecCCCeEEEEEECCCCcEEE
Confidence 999999999999999987665443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=188.20 Aligned_cols=279 Identities=19% Similarity=0.238 Sum_probs=211.8
Q ss_pred CCceeEEecCCC---CEEEEEc-CCeEEEEECCCC----cEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEC
Q 011916 168 DFYLNLVDWSSQ---NVLAVGL-GTCVYLWTASNS----KVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 168 d~~v~~l~ws~~---~~la~~~-~~~V~lw~~~~~----~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~ 238 (475)
+-.+.+++|+|. +++++|. .|.|-+||+.+. .-+.++. .|..+|.++.|+| +-..+++.+.||+|++-|+
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCceeeeeee
Confidence 345889999984 5677666 899999999522 1223332 7899999999999 4578999999999999999
Q ss_pred CCCeeeEEecC--CCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCC
Q 011916 239 TQCKRVRTFGG--HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGND 313 (475)
Q Consensus 239 ~~~~~~~~~~~--h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~D 313 (475)
++......+.. ....+..+.++ ...++.|..=|...+||.+..+.....+.-|...|++++++| ...+||+++.|
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D 344 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD 344 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence 87654443333 33444555553 456666666679999999988887888888999999999999 56689999999
Q ss_pred CcEEEEECCCCc----eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC----CCceeeeecCCC------
Q 011916 314 NQLLVWNQHSQQ----PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS----NGHQLNSVDTGS------ 379 (475)
Q Consensus 314 g~I~iwd~~~~~----~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~----~~~~~~~~~~~~------ 379 (475)
++++|||++... ++.....|...|.+..|+|.+..|++++ .|..|+|||.. .-.+...+.|..
T Consensus 345 ~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rwl 421 (498)
T KOG4328|consen 345 QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWL 421 (498)
T ss_pred cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeec---cCCceEEeecccccccCCccceeeccCcccccc
Confidence 999999998532 2344457999999999999999888776 79999999983 444555555432
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc-ceEE-EEECCCCCEEEEE-eCCCCEEEEecC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL-RVLY-LATSPDGQTIVTG-AGDETLRFWNVF 452 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~-~V~~-l~~spdg~~l~s~-s~Dg~I~iW~~~ 452 (475)
......|.|+..++++ |.--..|-|+|-..++.+.++..... .|.+ ..|+|-+..+++| +..|.|+||--.
T Consensus 422 T~fKA~W~P~~~li~v--g~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 422 TPFKAAWDPDYNLIVV--GRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cchhheeCCCccEEEE--eccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 2456789999999988 77778899999988888888765443 4544 4799988755555 456788887543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-24 Score=209.98 Aligned_cols=231 Identities=21% Similarity=0.390 Sum_probs=210.5
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
.|...|.++..-..++.+++|+.|..+-+|.+.....+..+.+|...|-++.|+ ..+|++|+.+|+|++||+. ..+.
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle-eAk~ 104 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE-EAKI 104 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh-hhhh
Confidence 567788888887788999999999999999998888888899999999999996 4789999999999999999 6788
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
++.+.+|...++++.|+|-+.+.|+|+.|..+++||.+...+.+.+.+|...|..+.|+|+|. ++++|+ .|..++||
T Consensus 105 vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr-~v~~g~--ed~tvki~ 181 (825)
T KOG0267|consen 105 VRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGR-WVASGG--EDNTVKIW 181 (825)
T ss_pred hhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCc-eeeccC--Ccceeeee
Confidence 889999999999999999999999999999999999998889999999999999999999999 455554 79999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
|...|+.+..+. +.+.+..+.|+|..-.+.. |+.|+.+++||+++.+.+.........|.++.|+|++..+++|..+
T Consensus 182 d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~--Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 182 DLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP--GSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred cccccccccccccccccccccccCchhhhhcc--CCCCceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCchh
Confidence 999999999997 7789999999998877777 9999999999999999999888889999999999999988887654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-22 Score=192.67 Aligned_cols=239 Identities=18% Similarity=0.330 Sum_probs=189.2
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEee-----------CCCCCcEEEEEEcCCC-CEEEEEeCCCeEE
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCD-----------LGPGDSVCSVQWTREG-SYISVGTNLGQVQ 234 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~-----------~~~~~~V~~v~~spdg-~~la~g~~dg~v~ 234 (475)
-.++.+.|++. .+|+++.....+|+|-...++...+. .+|...++|.+|+|+. ..+++++.||+++
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlR 294 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLR 294 (641)
T ss_pred cccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEE
Confidence 35788999974 68888989999999988777665542 2688899999999955 6899999999999
Q ss_pred EEECCCCee-eEEec-----CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC--ccEEEecCccC--CEEEEEEcC
Q 011916 235 VWDGTQCKR-VRTFG-----GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS--DYICKLAGHKS--EVCGLKWSH 302 (475)
Q Consensus 235 iwd~~~~~~-~~~~~-----~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~--~V~~l~~s~ 302 (475)
|||+...+. ...++ +....++.++|+ +..|++|+.||.|.+|+..... .....-.+|.. .|+||.||+
T Consensus 295 iWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 295 IWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY 374 (641)
T ss_pred EEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc
Confidence 999986543 22222 344578899995 6899999999999999985322 22344556776 999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-eeEEEec--cccceeEEEECCCCCcEEEEec----CCCCCeEEEEECCCCceeeee
Q 011916 303 DDRELASGGNDNQLLVWNQHSQQ-PTLRLTE--HTAAVKAIAWSPHQSSLLASGG----GTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 303 ~~~~lasg~~Dg~I~iwd~~~~~-~~~~~~~--h~~~v~~l~~sp~~~~ll~sg~----Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
||++|++-+.|+++++||++..+ ++....+ ...+-+.++|+|+.+ |+++|. |...+.+.+||..+...+..+
T Consensus 375 dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k-li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 375 DGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK-LILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred ccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCce-EEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 99999999999999999999754 4554444 234557899999998 666654 335678999999999999888
Q ss_pred cC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 376 DT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 376 ~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
.. ...|..+.|+|.-+.|++ |+.||.+++|--+
T Consensus 454 ~i~~aSvv~~~WhpkLNQi~~--gsgdG~~~vyYdp 487 (641)
T KOG0772|consen 454 DISTASVVRCLWHPKLNQIFA--GSGDGTAHVYYDP 487 (641)
T ss_pred cCCCceEEEEeecchhhheee--ecCCCceEEEECc
Confidence 64 567999999999999999 8889999987543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-22 Score=194.83 Aligned_cols=287 Identities=18% Similarity=0.329 Sum_probs=219.9
Q ss_pred eeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEee--CCCCCcEEEEEEcCC-----------CCEEEEEeCCCeEEE
Q 011916 171 LNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCD--LGPGDSVCSVQWTRE-----------GSYISVGTNLGQVQV 235 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~--~~~~~~V~~v~~spd-----------g~~la~g~~dg~v~i 235 (475)
..++.|++. .+..+-.|..+||||+.+-..+..+. +-|...|++|.--|- ...+.+++.||+|++
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRl 406 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRL 406 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEE
Confidence 445677764 57777789999999998754332221 257777777765541 135899999999999
Q ss_pred EECCCCeeeEEe-------------------------------------cCCCCceEEEEe--CCCEEEEEeCCCcEEEE
Q 011916 236 WDGTQCKRVRTF-------------------------------------GGHQTRAGVLAW--NSRILSSGSRDRNILQH 276 (475)
Q Consensus 236 wd~~~~~~~~~~-------------------------------------~~h~~~v~~l~~--~~~~l~sgs~dg~I~iw 276 (475)
||++.+..-..+ -+....+.+++. ++.+|++|.+-|+++||
T Consensus 407 W~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy 486 (1080)
T KOG1408|consen 407 WDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVY 486 (1080)
T ss_pred eecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEE
Confidence 998752110000 011234566666 67999999999999999
Q ss_pred ECCCCCccEEEecCccCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCC-CceeEEEeccccceeEEEECCCC--CcEE
Q 011916 277 DLRVSSDYICKLAGHKSEVCGLKWSH---DDRELASGGNDNQLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQ--SSLL 350 (475)
Q Consensus 277 d~~~~~~~~~~~~~h~~~V~~l~~s~---~~~~lasg~~Dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~--~~ll 350 (475)
++. .......+.+|..+|.|+.|+. ..++||+++.|..|+|||... -.+++++.+|...|+++.|.-.| ..++
T Consensus 487 ~Lq-~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~Mi 565 (1080)
T KOG1408|consen 487 DLQ-ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMI 565 (1080)
T ss_pred Eeh-hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEE
Confidence 998 6677788899999999999986 456899999999999999874 45678899999999999998766 4455
Q ss_pred EEecCCCCCeEEEEECCC---Cceeeee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC---C
Q 011916 351 ASGGGTADRCIRFWNTSN---GHQLNSV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG---H 421 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~---~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---h 421 (475)
.+| .|+.|.+--.+. |...... -....+..++..|..+++++ ++.|..|+||++.+++++..+++ |
T Consensus 566 scG---ADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t--~cQDrnirif~i~sgKq~k~FKgs~~~ 640 (1080)
T KOG1408|consen 566 SCG---ADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT--VCQDRNIRIFDIESGKQVKSFKGSRDH 640 (1080)
T ss_pred ecc---CchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEE--EecccceEEEeccccceeeeecccccC
Confidence 554 688776543332 2222111 12356889999999999999 78999999999999999999986 6
Q ss_pred CcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccC
Q 011916 422 SLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463 (475)
Q Consensus 422 ~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~ 463 (475)
++....+...|.|-||++.+.|.+|.|+|+..+++....-.+
T Consensus 641 eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 641 EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 778889999999999999999999999999999988775443
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-22 Score=178.40 Aligned_cols=225 Identities=21% Similarity=0.336 Sum_probs=186.3
Q ss_pred EEEEeCCCeEEEEECCC------------CeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCc
Q 011916 224 ISVGTNLGQVQVWDGTQ------------CKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGH 291 (475)
Q Consensus 224 la~g~~dg~v~iwd~~~------------~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 291 (475)
|++|++...|.-+++.- ..++..+..|.+.+++++.++.++++|+.|-+|+|||++ .......+..|
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~-k~~qlg~ll~H 82 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMR-KRKQLGILLSH 82 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEecc-chhhhcceecc
Confidence 56677666555555421 122445678999999999999999999999999999998 56667778889
Q ss_pred cCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 292 KSEVCGLKWSHDDR--ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 292 ~~~V~~l~~s~~~~--~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.+.|+++.|.+.-. .|++|+.||.|.+|+......+..++.|.+.|+.++.+|.++.-++.| .|+.++.||+-+|
T Consensus 83 agsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg---~D~~lr~WNLV~G 159 (362)
T KOG0294|consen 83 AGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVG---GDQVLRTWNLVRG 159 (362)
T ss_pred ccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEc---CCceeeeehhhcC
Confidence 99999999998665 999999999999999999999999999999999999999999555555 5999999999999
Q ss_pred ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEE
Q 011916 370 HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 370 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
+.-...........+.|+|.|.++++ + ..+.|-+|.+.+......+.. ..++.++.|- ++..|++|+.|+.|++|
T Consensus 160 r~a~v~~L~~~at~v~w~~~Gd~F~v--~-~~~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~ 234 (362)
T KOG0294|consen 160 RVAFVLNLKNKATLVSWSPQGDHFVV--S-GRNKIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLK 234 (362)
T ss_pred ccceeeccCCcceeeEEcCCCCEEEE--E-eccEEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCceEEEe
Confidence 98888777777777999999998887 3 367899999988776665553 3567777775 56689999999999999
Q ss_pred ecCCCCCC
Q 011916 450 NVFPSLKA 457 (475)
Q Consensus 450 ~~~~~~~~ 457 (475)
|.+.....
T Consensus 235 D~ds~~~~ 242 (362)
T KOG0294|consen 235 DTDSDTPL 242 (362)
T ss_pred ccCCCccc
Confidence 99975443
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=185.10 Aligned_cols=280 Identities=15% Similarity=0.246 Sum_probs=220.6
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCe
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~ 242 (475)
..--++++.|+|. -++++|.|+.++||.++...-..+..+ -...+|.+.+|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 3445899999997 478888899999999876544333222 1257899999999998 88899988999999998876
Q ss_pred eeE--EecCCCC---ceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 243 RVR--TFGGHQT---RAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 243 ~~~--~~~~h~~---~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
..+ .+.++.. .-..++-++++|+..+..|.|.+.... .+..+..++ -.+.|..++|+.|++.|++++.+|.|+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak-T~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~ 369 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK-TKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVY 369 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh-hhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEE
Confidence 543 2334432 233445578999999999999999877 455555554 456799999999999999999999999
Q ss_pred EEECCCCceeEEEeccccce--eEEEECCCCCcEEEEecCCCCCeEEEEECCC------Cceeeee-cCCCCeeEEEEcC
Q 011916 318 VWNQHSQQPTLRLTEHTAAV--KAIAWSPHQSSLLASGGGTADRCIRFWNTSN------GHQLNSV-DTGSQVCNLAWSK 388 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v--~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~------~~~~~~~-~~~~~v~~l~~s~ 388 (475)
+||++...+++.+.. .+.| +.++.++++. ++|+| +..|.|.|||..+ .+++..+ .....|.++.|++
T Consensus 370 v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~-ylA~G--S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~ 445 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVD-DGSVHGTSLCISLNGS-YLATG--SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH 445 (514)
T ss_pred EEecCCcceEEEEee-cCccceeeeeecCCCc-eEEec--cCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc
Confidence 999999988888865 3333 5677778988 56665 4999999999654 3445554 3456799999999
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCceEEEecCC---CcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 389 NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH---SLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 389 ~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h---~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+++.|+.++...++.+++..+++......+... -+.|+||+|||.|.+||.|..+|.|.+|.+.
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 999999876667889999999988877766543 3568999999999999999999999999975
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-21 Score=186.74 Aligned_cols=273 Identities=21% Similarity=0.304 Sum_probs=218.2
Q ss_pred eeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEE-EeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 171 LNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTR-LCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~-~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
+.+++++.+ +.||++. +|.|.||++..+-... .+..+.+..|.+++|++.+ .|.+.+.+|.|.-||+.+++....+
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~sg~i~EwDl~~lk~~~~~ 106 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGLSGSITEWDLHTLKQKYNI 106 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecCCceEEEEecccCceeEEe
Confidence 567888875 6666665 8999999999875443 3443567899999999555 5777777899999999999999999
Q ss_pred cCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc--EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 248 GGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY--ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 248 ~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
....+.|++++.+ +..++.|+.||.+..+++. .+.. ...+...++.|.+++|++++..|+.|+.||.|++||...
T Consensus 107 d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~-p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~ 185 (691)
T KOG2048|consen 107 DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG-PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKS 185 (691)
T ss_pred cCCCcceeEEEeCCccceEEeecCCceEEEEecC-CceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCC
Confidence 9999999999996 4899999999977777776 3322 223445568999999999999999999999999999999
Q ss_pred CceeEEEe-------c-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEE
Q 011916 324 QQPTLRLT-------E-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 324 ~~~~~~~~-------~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~ 394 (475)
+..++... . ...-|.++.|-.++ .+++| ...|+|.+||...|..+..+. +.+.|.+++..++++.++
T Consensus 186 ~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sg--DS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 186 GQTLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASG--DSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVF 261 (691)
T ss_pred CceEEEeeecccccccCCceEEEEEEEeecC--cEEEe--cCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEE
Confidence 88766222 1 23457788887666 46664 489999999999999998885 778999999999999999
Q ss_pred EEEecCCCeEEEEECCCCce----EEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 395 STHGYSQNQIMVWKYPSMAK----VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
+ ++.|+.|..|...+... ......|...|.+++..++ .|++|+.|.++.+-....
T Consensus 262 s--aGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 262 S--AGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred E--ccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9 77899998888765533 2333468888999999877 899999999998876554
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=188.03 Aligned_cols=287 Identities=18% Similarity=0.226 Sum_probs=222.8
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEee-CCCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEECCCC--e--eeEEecCCC
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCD-LGPGDSVCSVQWTREGSYISVG--TNLGQVQVWDGTQC--K--RVRTFGGHQ 251 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~-~~~~~~V~~v~~spdg~~la~g--~~dg~v~iwd~~~~--~--~~~~~~~h~ 251 (475)
.++.+++.+..++|||+...+....+. ......+.+++|+.... |+++ +.|..+++|.-... + .++...+.
T Consensus 3 eNl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd- 80 (673)
T KOG4378|consen 3 ENLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD- 80 (673)
T ss_pred cceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc-
Confidence 367888889999999998765443332 12234489999987664 5444 44677888974322 1 12222232
Q ss_pred CceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE
Q 011916 252 TRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 252 ~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~ 329 (475)
.-.|++. -..++++|+..+.|+|||++ ...+.+.+.+|...|+++.++....+||+++..|.|.|..+.++.....
T Consensus 81 -~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~ 158 (673)
T KOG4378|consen 81 -NAFCVACASQSLYEISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT 158 (673)
T ss_pred -hHHHHhhhhcceeeeccCcCceeeehhhH-HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc
Confidence 3333333 24799999999999999999 6777888999999999999999999999999999999999999887777
Q ss_pred Eecc-ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEE
Q 011916 330 LTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 330 ~~~h-~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 406 (475)
|... ...|.-+.|+|..+.++.+.+ .+|.|.+||+....++... .|..+...++|+|....|+++.| .|..|.+
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~as--d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG-~Dkki~~ 235 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIAS--DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG-YDKKINI 235 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeec--cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec-ccceEEE
Confidence 7654 345668999999999999987 9999999999988887766 47788999999999888887755 6899999
Q ss_pred EECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc--ccCCccccccCcc
Q 011916 407 WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL--VKDTSLWSLGRTH 473 (475)
Q Consensus 407 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~--~~~~~v~s~~~~~ 473 (475)
||..+......+. ...+...++|+++|.+|+.|...|.|..||+...+..-.. .++..|.++.+++
T Consensus 236 yD~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 236 YDIRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred eecccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 9999877666665 4557889999999999999999999999999876655443 3455566665543
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-20 Score=177.85 Aligned_cols=252 Identities=12% Similarity=0.086 Sum_probs=188.9
Q ss_pred eEEecCCC-C-EEEE-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEe
Q 011916 172 NLVDWSSQ-N-VLAV-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 172 ~~l~ws~~-~-~la~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~iwd~~~~~~~~~~ 247 (475)
..++|+++ . ++++ +.++.|++||..+++....+.. ...+..++|+|+++.++++ ..++.|.+||+.+.+.+..+
T Consensus 34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~ 111 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI 111 (300)
T ss_pred CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence 45888887 3 4344 4578999999999987765542 2345688999999977665 45899999999998887777
Q ss_pred cCCCCceEEEEe--CCCEEEEEeCCC-cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 011916 248 GGHQTRAGVLAW--NSRILSSGSRDR-NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG-GNDNQLLVWNQHS 323 (475)
Q Consensus 248 ~~h~~~v~~l~~--~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg-~~Dg~I~iwd~~~ 323 (475)
..+ ..+.+++| ++.+++++..++ .+.+||.+. ........ ....+.++.|++++++|+++ ..++.|++||+.+
T Consensus 112 ~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~ 188 (300)
T TIGR03866 112 PVG-VEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-YEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVAT 188 (300)
T ss_pred eCC-CCcceEEECCCCCEEEEEecCCCeEEEEeCCC-CeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCc
Confidence 532 34567777 468888888775 466779873 33333322 23346789999999988655 4689999999999
Q ss_pred CceeEEEeccc-------cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 324 QQPTLRLTEHT-------AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 324 ~~~~~~~~~h~-------~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
++.+..+..+. .....++|+|+++.++++.+ .++.|.+||+.+++.+..+..+..+.++.|+|++++|+++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~--~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 189 RKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG--PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred ceeeeeeeecccccccccCCccceEECCCCCEEEEEcC--CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEE
Confidence 87766554221 12356899999998766544 5678999999999888777667789999999999999874
Q ss_pred EecCCCeEEEEECCCCceEEEecCCCcceEEEEECC
Q 011916 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 432 (475)
+..+|.|.+||+.+++.+..++.. ...+.++++|
T Consensus 267 -~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 267 -NGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred -cCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 346899999999999999988754 5568888765
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-23 Score=206.82 Aligned_cols=215 Identities=25% Similarity=0.444 Sum_probs=190.9
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW 259 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~ 259 (475)
.++.+|.+..+-||.+..-..+..+. +|...|.+|.|+++..+|++|+.+|+|++||++..+.++++.+|...+..+.|
T Consensus 42 ~~~~Gg~~~k~~L~~i~kp~~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f 120 (825)
T KOG0267|consen 42 SLVTGGEDEKVNLWAIGKPNAITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDF 120 (825)
T ss_pred eeccCCCceeeccccccCCchhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeee
Confidence 45556667788899887654444443 89999999999999999999999999999999999999999999999999999
Q ss_pred CC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccce
Q 011916 260 NS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 260 ~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
++ .++++|+.|+.+++||++ ...+...+.+|...|..+.|+|+|+++++|+.|..++|||+..|+.+..|..|.+.+
T Consensus 121 ~P~~~~~a~gStdtd~~iwD~R-k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v 199 (825)
T KOG0267|consen 121 HPYGEFFASGSTDTDLKIWDIR-KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKV 199 (825)
T ss_pred ccceEEeccccccccceehhhh-ccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccc
Confidence 85 788999999999999999 567788899999999999999999999999999999999999999999999999999
Q ss_pred eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CCCeeEEEEcCCCCeEEEEEecCC
Q 011916 338 KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
..+.|+|..- |+++|+ .|+++++||+++.+.+...+. ...|.++.|++++..+++ |...
T Consensus 200 ~sle~hp~e~-Lla~Gs--~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~--G~q~ 259 (825)
T KOG0267|consen 200 QSLEFHPLEV-LLAPGS--SDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLS--GEQI 259 (825)
T ss_pred cccccCchhh-hhccCC--CCceeeeeccceeEEeeccCCccCCceeeeecCCceeeec--Cchh
Confidence 9999999865 788866 999999999999888877754 467999999999999888 6543
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-21 Score=173.29 Aligned_cols=201 Identities=25% Similarity=0.374 Sum_probs=166.1
Q ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe----------eeE-----EecCCCCceEEEEe---CCCEEEEE
Q 011916 207 GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCK----------RVR-----TFGGHQTRAGVLAW---NSRILSSG 267 (475)
Q Consensus 207 ~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~----------~~~-----~~~~h~~~v~~l~~---~~~~l~sg 267 (475)
.|.+.|.++...+ .|+|+++|+.||.|.|||++... .+. .-.+|.-.|..+.| +..++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 6789999999988 78999999999999999987532 111 11367889999999 56899999
Q ss_pred eCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECC
Q 011916 268 SRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH---DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP 344 (475)
Q Consensus 268 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~---~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp 344 (475)
+.|.++++||..+ .+....+. ..+.|.+-+||| ..-++|+|..|-.|++.|+.+|...+.+.+|...|.++.|+|
T Consensus 121 SFDhtlKVWDtnT-lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp 198 (397)
T KOG4283|consen 121 SFDHTLKVWDTNT-LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSP 198 (397)
T ss_pred cccceEEEeeccc-ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEecc
Confidence 9999999999984 33333333 456788888988 344788888999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCC-ceeeee---------------cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 345 HQSSLLASGGGTADRCIRFWNTSNG-HQLNSV---------------DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 345 ~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~---------------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
...+++++|+ .||.|++||++.. -+...+ .+.+.+..++|+.++.++++ ...|..+++|+
T Consensus 199 ~~e~vLatgs--aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~--~gtd~r~r~wn 274 (397)
T KOG4283|consen 199 SSEWVLATGS--ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLAS--CGTDDRIRVWN 274 (397)
T ss_pred CceeEEEecC--CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhh--ccCccceEEee
Confidence 9999999977 9999999999864 233222 24567999999999999999 66899999999
Q ss_pred CCCCc
Q 011916 409 YPSMA 413 (475)
Q Consensus 409 ~~~~~ 413 (475)
..+++
T Consensus 275 ~~~G~ 279 (397)
T KOG4283|consen 275 MESGR 279 (397)
T ss_pred cccCc
Confidence 98764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-20 Score=185.32 Aligned_cols=241 Identities=17% Similarity=0.334 Sum_probs=204.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eeeEEecCC-CCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC-KRVRTFGGH-QTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~-~~~~~~~~h-~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
...|.+++++.+.+.||++-.+|.|.||++..+ -+...+.++ ...|-+++|. +..|++.+.+|.|.-||+. ..+..
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~-~lk~~ 103 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLH-TLKQK 103 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecc-cCcee
Confidence 578999999999999999999999999999865 344455554 4589999996 8899999999999999998 67777
Q ss_pred EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL--RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
..+....+.|.+++.+|.+..++.|+.||.++.++...++..+ .+....+.|.+++|+|++..++. |+.||.|++
T Consensus 104 ~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~---Gs~Dg~Iri 180 (691)
T KOG2048|consen 104 YNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG---GSIDGVIRI 180 (691)
T ss_pred EEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe---cccCceEEE
Confidence 7888888999999999999999999999988888887776543 33345789999999999986665 569999999
Q ss_pred EECCCCceeeeecC---------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC
Q 011916 364 WNTSNGHQLNSVDT---------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 364 wd~~~~~~~~~~~~---------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 434 (475)
||..++..+..+.. ..-|.++.|-.+ ..|++ |.+.|.|.+||...+..+..+..|.+.|.+|+..+++
T Consensus 181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~s--gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIAS--GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE 257 (691)
T ss_pred EEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEE--ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCC
Confidence 99999988773321 123667777755 45666 8999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCCEEEEecCCCCC
Q 011916 435 QTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.++++++.|+.|..+...+...
T Consensus 258 d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 258 DRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred CeEEEccCCCceEEEEecCCcc
Confidence 9999999999999998887754
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=175.22 Aligned_cols=244 Identities=16% Similarity=0.293 Sum_probs=207.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEEC------
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDL------ 278 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~------ 278 (475)
+|.+.|..++-......+.+++.|.+.+||.+++++++.++.||.+.|.++.|+ +.++++++.|++-.||..
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~v 225 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEV 225 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcC
Confidence 899999999988777899999999999999999999999999999999999995 589999999999999972
Q ss_pred CC-----------------------------CC----ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 279 RV-----------------------------SS----DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 279 ~~-----------------------------~~----~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
.. .+ .++..+.+|...|.+..|-..|+++++++.|.+..+||+++++
T Consensus 226 P~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge 305 (481)
T KOG0300|consen 226 PSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE 305 (481)
T ss_pred CCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc
Confidence 10 00 1245678899999999999999999999999999999999999
Q ss_pred eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCe
Q 011916 326 PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQ 403 (475)
Q Consensus 326 ~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~ 403 (475)
++..+.+|....+.++-+|.++ |+++.+ .|.+.++||++..- .+..+ .|...|++..|..+.+ +++ |++|..
T Consensus 306 ~v~~LtGHd~ELtHcstHptQr-LVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVS--gSDDrT 379 (481)
T KOG0300|consen 306 VVNILTGHDSELTHCSTHPTQR-LVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVS--GSDDRT 379 (481)
T ss_pred eeccccCcchhccccccCCcce-EEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecCCc-eee--cCCCce
Confidence 9999999999999999999988 555554 89999999998432 23333 3667899999987765 455 889999
Q ss_pred EEEEECCCCc-eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 404 IMVWKYPSMA-KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 404 I~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
|++||++++. ++.++. -..+++.++.+..+..|+.--.+..|++||+......
T Consensus 380 vKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 380 VKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred EEEeeeccccCcceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 9999999874 566665 5667899999988889998888899999999876543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-21 Score=172.75 Aligned_cols=265 Identities=20% Similarity=0.376 Sum_probs=203.1
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEee----CCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCeeeEEecCCC
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCD----LGPGDSVCSVQWTRE----GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ 251 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~----~~~~~~V~~v~~spd----g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~ 251 (475)
.++|...++.|.+|.....--+.+++ ..+.+....++|+-+ ..+||+|+.-|.|+|.|+.++++...+.+|.
T Consensus 56 ~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG 135 (385)
T KOG1034|consen 56 QVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHG 135 (385)
T ss_pred ceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccC
Confidence 57788888899999887654333332 246778888999864 3589999999999999999999999999999
Q ss_pred CceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEE---ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 252 TRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICK---LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 252 ~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
..|..+.+. ++++++++.|..|++|+++ ...++.. ..+|..+|.++.|+.+|.+|+++|.|.+|++|++...+
T Consensus 136 ~sINeik~~p~~~qlvls~SkD~svRlwnI~-~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 136 GSINEIKFHPDRPQLVLSASKDHSVRLWNIQ-TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred ccchhhhcCCCCCcEEEEecCCceEEEEecc-CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhH
Confidence 999999995 5799999999999999998 5555555 46799999999999999999999999999999997321
Q ss_pred ---------------------------eeE-EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC-CCCceee---
Q 011916 326 ---------------------------PTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT-SNGHQLN--- 373 (475)
Q Consensus 326 ---------------------------~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~-~~~~~~~--- 373 (475)
+.. +-..|...|.|+.|-- . ++.+-+ -++.|..|.. +-++.+.
T Consensus 215 f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d-~ilSks--cenaI~~w~pgkl~e~~~~vk 289 (385)
T KOG1034|consen 215 FKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--D-FILSKS--CENAIVCWKPGKLEESIHNVK 289 (385)
T ss_pred HhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--h-heeecc--cCceEEEEecchhhhhhhccC
Confidence 011 1234778888888864 4 444443 5889999987 2222211
Q ss_pred ----------eecC-CCC--eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE--EEecC--CCcceEEEEECCCCCE
Q 011916 374 ----------SVDT-GSQ--VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKV--STLTG--HSLRVLYLATSPDGQT 436 (475)
Q Consensus 374 ----------~~~~-~~~--v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~--~~l~~--h~~~V~~l~~spdg~~ 436 (475)
.++. ... ....+|.+.++.|++ |...|.|++||+...++. .++.. ....|...+|+.||.+
T Consensus 290 p~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~--gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~ 367 (385)
T KOG1034|consen 290 PPESATTILGEFDYPMCDIWFIRFAFDPWQKMLAL--GNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSI 367 (385)
T ss_pred CCccceeeeeEeccCccceEEEEEeecHHHHHHhh--ccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcE
Confidence 1211 122 334566788889998 999999999999876653 22222 2356899999999999
Q ss_pred EEEEeCCCCEEEEecC
Q 011916 437 IVTGAGDETLRFWNVF 452 (475)
Q Consensus 437 l~s~s~Dg~I~iW~~~ 452 (475)
|+..+.|++|.-||.-
T Consensus 368 lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 368 LVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEeCCCcEEEEEee
Confidence 9999999999999853
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-21 Score=176.22 Aligned_cols=227 Identities=24% Similarity=0.473 Sum_probs=170.9
Q ss_pred CCCEEEEE--cCCeEEEEECCCC--------------cEEEEeeC-CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 011916 178 SQNVLAVG--LGTCVYLWTASNS--------------KVTRLCDL-GPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 178 ~~~~la~~--~~~~V~lw~~~~~--------------~~~~~~~~-~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~ 239 (475)
++..++++ ..|.|+||++... +...++.+ +|...=++++|||- ...|++|..-+.|++|...
T Consensus 163 ~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~ 242 (440)
T KOG0302|consen 163 GNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS 242 (440)
T ss_pred CCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeec
Confidence 34444443 3789999998531 11112222 67777889999992 2348888888999999988
Q ss_pred CCeee---EEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCC-ccEEEecCccCCEEEEEEcCCCCEEEEEeC
Q 011916 240 QCKRV---RTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELASGGN 312 (475)
Q Consensus 240 ~~~~~---~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~lasg~~ 312 (475)
++.-. ..+.+|+..|-.|+|+ ...|++|+.||+|+|||+|... +.....++|.+.|+-|.|+.+..+||+|+.
T Consensus 243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D 322 (440)
T KOG0302|consen 243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD 322 (440)
T ss_pred cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC
Confidence 86543 3456899999999995 4799999999999999999652 334445889999999999998889999999
Q ss_pred CCcEEEEECCC---CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-------------------
Q 011916 313 DNQLLVWNQHS---QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH------------------- 370 (475)
Q Consensus 313 Dg~I~iwd~~~---~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~------------------- 370 (475)
||+++|||++. ++++..|+.|..+|++|.|+|....+++++| .|.+|.+||+....
T Consensus 323 dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg--~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQ 400 (440)
T KOG0302|consen 323 DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG--EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQ 400 (440)
T ss_pred CceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc--CCCcEEEEEeeccCChhhhccccccchhcCCce
Confidence 99999999984 5688899999999999999999888888876 89999999985321
Q ss_pred eeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 371 QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 371 ~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
++.....+..+..+.|+++-.-++++++ .+| +.||.
T Consensus 401 LLFVHqGQke~KevhWH~QiPG~lvsTa-~dG-fnVfk 436 (440)
T KOG0302|consen 401 LLFVHQGQKEVKEVHWHRQIPGLLVSTA-IDG-FNVFK 436 (440)
T ss_pred eEEEecchhHhhhheeccCCCCeEEEec-ccc-eeEEE
Confidence 1111123345778889887776666433 344 44443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-19 Score=181.97 Aligned_cols=282 Identities=19% Similarity=0.346 Sum_probs=218.5
Q ss_pred ceeEEecCCCCEEEEEcCCeEEEEECCCCcEE-----EEeeCCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCCCe
Q 011916 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVT-----RLCDLGPGDSVCSVQWTREG--SYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~-----~~~~~~~~~~V~~v~~spdg--~~la~g~~dg~v~iwd~~~~~ 242 (475)
-+..+.--++.++++..++.+++|+..+.+.. ...... .+.|+++ ++|.- +.++.|+.+|.++||++.+++
T Consensus 116 ~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~-~~~Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K 193 (910)
T KOG1539|consen 116 KVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVE-GDFITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGK 193 (910)
T ss_pred eEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeecc-CCceeeE-ecchhheeeEEEeecCCcEEEEEeccCc
Confidence 34555555778999999999999999885211 122222 2338887 46643 578999999999999999999
Q ss_pred eeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEEEeCCCcEEEE
Q 011916 243 RVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQLLVW 319 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~I~iw 319 (475)
.+.+++++...|+++.-.+ +.++.|..+|+|.+++++ ..+.+..++...+.|+.++|..||+ .||+|+..|.+.+|
T Consensus 194 ~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK-~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~w 272 (910)
T KOG1539|consen 194 VVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLK-FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFW 272 (910)
T ss_pred EEEEecccccceeEeccCCcceEEEEeccCceEEEEEcc-cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEE
Confidence 9999999999999999887 899999999999999999 5667777775579999999999998 56677777999999
Q ss_pred ECCCCceeEEEe-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC--C---------------------------
Q 011916 320 NQHSQQPTLRLT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN--G--------------------------- 369 (475)
Q Consensus 320 d~~~~~~~~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~--~--------------------------- 369 (475)
|++..+.+..+. .|.+.|..+.|.|... ++++.+ .|+.+++|=..+ |
T Consensus 273 DLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~--~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ 349 (910)
T KOG1539|consen 273 DLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAG--ADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF 349 (910)
T ss_pred EcCCCeeeeeeeccccCCcccceecCCCc-eEeecc--CCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence 999877666555 4777777777777766 444433 455544442210 0
Q ss_pred --------------------------------------------------------------------------------
Q 011916 370 -------------------------------------------------------------------------------- 369 (475)
Q Consensus 370 -------------------------------------------------------------------------------- 369 (475)
T Consensus 350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~ 429 (910)
T KOG1539|consen 350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF 429 (910)
T ss_pred EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence
Q ss_pred ---ce-eeeecC------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe---cCCCcceEEEEECCCCCE
Q 011916 370 ---HQ-LNSVDT------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL---TGHSLRVLYLATSPDGQT 436 (475)
Q Consensus 370 ---~~-~~~~~~------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~ 436 (475)
.. ...+++ ...+.+++.++.|+..+. |++.|.|-+|++.++-....+ ..|..+|++++...-++.
T Consensus 430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I--G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~ 507 (910)
T KOG1539|consen 430 RNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI--GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRL 507 (910)
T ss_pred cCcccccEEecCccccccCcceEEEEEeccCceEEE--eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCce
Confidence 00 000111 134678888999999988 999999999999999888888 579999999999888899
Q ss_pred EEEEeCCCCEEEEecCCCCCCCC
Q 011916 437 IVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 437 l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+++++.||.+++|++........
T Consensus 508 ~vsa~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKKVLKKS 530 (910)
T ss_pred EEEccCcceEEEEecCCcceeee
Confidence 99999999999999998775444
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=181.38 Aligned_cols=232 Identities=19% Similarity=0.353 Sum_probs=185.0
Q ss_pred CEEEEEc-CCeEEEEECCCCc-EEEEe-------------------eCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 011916 180 NVLAVGL-GTCVYLWTASNSK-VTRLC-------------------DLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWD 237 (475)
Q Consensus 180 ~~la~~~-~~~V~lw~~~~~~-~~~~~-------------------~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd 237 (475)
|++|+|. +..|.|||+.=-. +...+ ..+|.+.|.+++|+.. .+.||+|+.|.+|++||
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD 272 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWD 272 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEE
Confidence 6777766 8999999986211 11111 1157788889999874 46899999999999999
Q ss_pred CCCCeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC-CCEEEEEeCC
Q 011916 238 GTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD-DRELASGGND 313 (475)
Q Consensus 238 ~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~lasg~~D 313 (475)
+.++++..++..|...|.++.|+ +.+|++|+.|++|.+.|.|.....-.... ..+.|-.++|.+. ...++++..|
T Consensus 273 ~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tdd 351 (463)
T KOG0270|consen 273 VDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDD 351 (463)
T ss_pred cCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCC
Confidence 99999999999999999999996 58999999999999999995333322232 4577999999994 4577888899
Q ss_pred CcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeeEEEEcCC
Q 011916 314 NQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT---GSQVCNLAWSKN 389 (475)
Q Consensus 314 g~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~ 389 (475)
|+|+-+|++.. +++.++..|.+.|.+|++++.-..++++++ .|+.+++|++..-.......+ -+...|+++.|+
T Consensus 352 G~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s--~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~ 429 (463)
T KOG0270|consen 352 GTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS--TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPD 429 (463)
T ss_pred ceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc--ccceEEEEeecCCCCcccccccccccceeecccCCC
Confidence 99999999965 899999999999999999999999999976 999999999875443222211 134788888998
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceE
Q 011916 390 VNELVSTHGYSQNQIMVWKYPSMAKV 415 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~~~~~ 415 (475)
-..+++. |+..+.++|||+.+...+
T Consensus 430 ~a~~la~-GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 430 VAFTLAF-GGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cceEEEe-cCccceEEEeecccChhH
Confidence 8887776 667779999999776543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-21 Score=175.47 Aligned_cols=191 Identities=23% Similarity=0.426 Sum_probs=160.8
Q ss_pred CCEEEEEeCCCcEEEEECCC---------------CCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 011916 261 SRILSSGSRDRNILQHDLRV---------------SSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 261 ~~~l~sgs~dg~I~iwd~~~---------------~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
..+.++-+..|.|.|||+.. ....+.++.+|.++=.+|+||| ....|++|.--+.|++|...++
T Consensus 165 ~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g 244 (440)
T KOG0302|consen 165 EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTG 244 (440)
T ss_pred cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccC
Confidence 45666667889999998852 2245778889999999999999 2336888888889999999886
Q ss_pred cee---EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC---ceeeeecCCCCeeEEEEcCCCCeEEEEEe
Q 011916 325 QPT---LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG---HQLNSVDTGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 325 ~~~---~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~---~~~~~~~~~~~v~~l~~s~~~~~l~~~~g 398 (475)
.-. ..|.+|...|..++|+|....++++|+ .|+.|+|||++.+ .++..-.+.+.|..+.|+.....|++ |
T Consensus 245 ~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLas--G 320 (440)
T KOG0302|consen 245 SWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLAS--G 320 (440)
T ss_pred ceeecCccccccccchhhhccCCccCceEEeee--cCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeee--c
Confidence 532 245679999999999999999999987 9999999999998 56666678899999999999997777 9
Q ss_pred cCCCeEEEEECCC---CceEEEecCCCcceEEEEECCC-CCEEEEEeCCCCEEEEecCCCC
Q 011916 399 YSQNQIMVWKYPS---MAKVSTLTGHSLRVLYLATSPD-GQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 399 ~~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~spd-g~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
..+|.+.|||+++ ++++++++.|..+|+++.|+|. ...|++++.|..|.+||+.-..
T Consensus 321 ~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 321 GDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred CCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999999999975 5788999999999999999994 5678888999999999997544
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=203.25 Aligned_cols=244 Identities=23% Similarity=0.425 Sum_probs=192.5
Q ss_pred CCCCCceeEEecCCC-----CEEEEEc-CCeEEEEECCCC---c---EEEEeeCCCCCcEEEEEEcCCC-CEEEEEeCCC
Q 011916 165 LQDDFYLNLVDWSSQ-----NVLAVGL-GTCVYLWTASNS---K---VTRLCDLGPGDSVCSVQWTREG-SYISVGTNLG 231 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~-----~~la~~~-~~~V~lw~~~~~---~---~~~~~~~~~~~~V~~v~~spdg-~~la~g~~dg 231 (475)
++.+...+.++|.+. .++++|. ||.|.+||...- . ++..+. .|.+.|..+.|++.+ ++||+|+.||
T Consensus 61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred ccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCCC
Confidence 345556678999862 3677766 899999998752 2 122222 689999999999955 5999999999
Q ss_pred eEEEEECCCCeeeEEec--CCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccC--CEEEEEEcCCC
Q 011916 232 QVQVWDGTQCKRVRTFG--GHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKS--EVCGLKWSHDD 304 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~--~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~s~~~ 304 (475)
.|.|||+.+-+.-.+.. .....|.+++|| .++|++++.+|.+.|||++. .+.+..+..|.. .+..++|+|+.
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~-~~pii~ls~~~~~~~~S~l~WhP~~ 218 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRK-KKPIIKLSDTPGRMHCSVLAWHPDH 218 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccC-CCcccccccCCCccceeeeeeCCCC
Confidence 99999998754444432 245789999997 48999999999999999994 455555555544 47799999965
Q ss_pred C-EEEEEeCCC---cEEEEECCC-CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-C
Q 011916 305 R-ELASGGNDN---QLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-G 378 (475)
Q Consensus 305 ~-~lasg~~Dg---~I~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~ 378 (475)
. .|+++++|. .|.+||++. ..+++.+.+|...|.++.|++.+..++.+++ .|+.|.+||..+++.+..+.. +
T Consensus 219 aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg--kD~~ii~wN~~tgEvl~~~p~~~ 296 (1049)
T KOG0307|consen 219 ATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG--KDNRIICWNPNTGEVLGELPAQG 296 (1049)
T ss_pred ceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc--CCCCeeEecCCCceEeeecCCCC
Confidence 4 677776654 699999985 4567788899999999999999977777776 899999999999999999965 5
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q 011916 379 SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~ 413 (475)
..+..+.|+|...-++++ .+-+|.|.||.+....
T Consensus 297 nW~fdv~w~pr~P~~~A~-asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 297 NWCFDVQWCPRNPSVMAA-ASFDGKISIYSLQGTD 330 (1049)
T ss_pred cceeeeeecCCCcchhhh-heeccceeeeeeecCC
Confidence 679999999988866554 6789999999986553
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-21 Score=202.30 Aligned_cols=248 Identities=19% Similarity=0.366 Sum_probs=200.4
Q ss_pred CCCCcEEEEEEcCCCCE----EEEEeCCCeEEEEECCCC------eeeEEecCCCCceEEEEeC---CCEEEEEeCCCcE
Q 011916 207 GPGDSVCSVQWTREGSY----ISVGTNLGQVQVWDGTQC------KRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNI 273 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~----la~g~~dg~v~iwd~~~~------~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I 273 (475)
........++|.+.|.. ||.|..||.|.+||...- ..+.+...|.+.|..+.|| +++|++|+.||.|
T Consensus 62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI 141 (1049)
T KOG0307|consen 62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEI 141 (1049)
T ss_pred cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcE
Confidence 44567889999997765 888999999999997652 3455677899999999997 5799999999999
Q ss_pred EEEECCCCCccEEE-ecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEecccc--ceeEEEECCCCCcE
Q 011916 274 LQHDLRVSSDYICK-LAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTA--AVKAIAWSPHQSSL 349 (475)
Q Consensus 274 ~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~--~v~~l~~sp~~~~l 349 (475)
.|||+........- -....++|.+++|+. ..+.||+++.+|.+.|||++..+++..+..+.+ .+..++|+|++..-
T Consensus 142 ~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq 221 (1049)
T KOG0307|consen 142 LIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ 221 (1049)
T ss_pred EEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence 99999854333222 223557899999988 456889999999999999999998888877665 47799999998765
Q ss_pred EEEecC-CCCCeEEEEECCCC-ceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceE
Q 011916 350 LASGGG-TADRCIRFWNTSNG-HQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVL 426 (475)
Q Consensus 350 l~sg~G-s~d~~I~iwd~~~~-~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~ 426 (475)
++++++ ...-.|.+||++.. ..++.+ .|...|.++.|++.+..++.+ +..|++|.+|+.++++.+.++......+.
T Consensus 222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllS-sgkD~~ii~wN~~tgEvl~~~p~~~nW~f 300 (1049)
T KOG0307|consen 222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLS-SGKDNRIICWNPNTGEVLGELPAQGNWCF 300 (1049)
T ss_pred eeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhc-ccCCCCeeEecCCCceEeeecCCCCccee
Confidence 555442 23357999998864 345555 477889999999988555554 55899999999999999999998888999
Q ss_pred EEEECCCCC-EEEEEeCCCCEEEEecCCCC
Q 011916 427 YLATSPDGQ-TIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 427 ~l~~spdg~-~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.+.|+|... .++.++-||.|.|+.+....
T Consensus 301 dv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 301 DVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeecCCCcchhhhheeccceeeeeeecCC
Confidence 999999655 78888999999999998766
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=177.17 Aligned_cols=275 Identities=19% Similarity=0.353 Sum_probs=208.7
Q ss_pred eEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCC---EEEEEeCCCeEEEEECCCC--eeeEE
Q 011916 172 NLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGS---YISVGTNLGQVQVWDGTQC--KRVRT 246 (475)
Q Consensus 172 ~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~---~la~g~~dg~v~iwd~~~~--~~~~~ 246 (475)
+..+|.+..++|.|.+..|.+||.....+..... +|...|+|+.|-|+.+ ++++|+.||.|.+|.++.. .++.+
T Consensus 18 ~v~sw~~~~~vafGa~~~Iav~dp~k~~i~t~l~-GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~ 96 (764)
T KOG1063|consen 18 KVSSWGPGGLVAFGAGPAIAVADPEKILIVTTLD-GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT 96 (764)
T ss_pred ccccccccceEEecCCceEEEeCcccceeEEecc-CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe
Confidence 3477888999999999999999998875555544 9999999999999877 8999999999999998843 44556
Q ss_pred ecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCC--------------------------------------------
Q 011916 247 FGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS-------------------------------------------- 282 (475)
Q Consensus 247 ~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~-------------------------------------------- 282 (475)
+.+|...+.|+.-......+...|+.+.+||.....
T Consensus 97 ~~g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~ 176 (764)
T KOG1063|consen 97 IQGHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSS 176 (764)
T ss_pred ecCcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEecc
Confidence 667666655554433333334688888888873222
Q ss_pred -----ccEEEecCccCCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCc-----------------e----eEE----
Q 011916 283 -----DYICKLAGHKSEVCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQ-----------------P----TLR---- 329 (475)
Q Consensus 283 -----~~~~~~~~h~~~V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~-----------------~----~~~---- 329 (475)
..+..+.+|...|.+++|...+. +||++++|..|+||.+.-+. + ...
T Consensus 177 ~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~ 256 (764)
T KOG1063|consen 177 SADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYR 256 (764)
T ss_pred CCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEE
Confidence 11345678999999999987443 89999999999999875221 0 111
Q ss_pred ------EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeee--ec-C---CCCeeEEEEcCCCCeEEE
Q 011916 330 ------LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH--QLNS--VD-T---GSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 330 ------~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~--~~~~--~~-~---~~~v~~l~~s~~~~~l~~ 395 (475)
+.+|.+.|.++.|+|.+..|+++. .|.++.+|.-.+.. =+.. +. . ........|+|+++.+++
T Consensus 257 is~eall~GHeDWV~sv~W~p~~~~LLSAS---aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~ 333 (764)
T KOG1063|consen 257 ISFEALLMGHEDWVYSVWWHPEGLDLLSAS---ADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIA 333 (764)
T ss_pred EehhhhhcCcccceEEEEEccchhhheecc---cCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEE
Confidence 237999999999999997677754 79999999865542 2222 21 1 234788999999988887
Q ss_pred EEecCCCeEEEEECCC---CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 396 THGYSQNQIMVWKYPS---MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~---~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
-+..|..++|.... ......+.||.+.|..++|+|.|++|++.+.|.+-|+|--.
T Consensus 334 --~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w 391 (764)
T KOG1063|consen 334 --HGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW 391 (764)
T ss_pred --ecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc
Confidence 56788999998332 23445567899999999999999999999999999998766
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=175.64 Aligned_cols=269 Identities=16% Similarity=0.255 Sum_probs=208.5
Q ss_pred eeEEecCC--CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCC-----
Q 011916 171 LNLVDWSS--QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGS--YISVGTNLGQVQVWDGTQC----- 241 (475)
Q Consensus 171 v~~l~ws~--~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~--~la~g~~dg~v~iwd~~~~----- 241 (475)
|.+++-.+ .-++.++.||+|+||.+.++..+..+.+ .+.|.||+|+|.+. .||++.... +.|.+..-|
T Consensus 403 Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~ 479 (733)
T KOG0650|consen 403 VRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV 479 (733)
T ss_pred EEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh
Confidence 55555554 4566667799999999999999999864 57899999999664 555555433 444432111
Q ss_pred --------------------------------eeeEEecCCCCceEEEEeC--CCEEEEEeCC---CcEEEEECCCCCcc
Q 011916 242 --------------------------------KRVRTFGGHQTRAGVLAWN--SRILSSGSRD---RNILQHDLRVSSDY 284 (475)
Q Consensus 242 --------------------------------~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d---g~I~iwd~~~~~~~ 284 (475)
+-++..-.|...|..+.|+ |++|++...+ ..|.|+++. ....
T Consensus 480 ~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS-K~~s 558 (733)
T KOG0650|consen 480 GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS-KRKS 558 (733)
T ss_pred cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc-cccc
Confidence 0122333577889999995 7899988654 578999987 3333
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
..-+....+.|.++.|+|...+|++++. ..|+|||+..+..+..+......|..++.+|.|..|++ |+.|+.+..|
T Consensus 559 Q~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~---gs~d~k~~Wf 634 (733)
T KOG0650|consen 559 QSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL---GSYDKKMCWF 634 (733)
T ss_pred cCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE---ecCCCeeEEE
Confidence 3445556678999999999999999887 68999999998888777777888999999999998888 4589999999
Q ss_pred ECCCC-ceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC---------CCceEEEecCCCcc----eEEEE
Q 011916 365 NTSNG-HQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP---------SMAKVSTLTGHSLR----VLYLA 429 (475)
Q Consensus 365 d~~~~-~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~---------~~~~~~~l~~h~~~----V~~l~ 429 (475)
|+.-. ++.+.+. |...+++++|++.-..+++ |+.||.+.||.-. -.-++..+++|... |+...
T Consensus 635 DldlsskPyk~lr~H~~avr~Va~H~ryPLfas--~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~ 712 (733)
T KOG0650|consen 635 DLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFAS--GSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTI 712 (733)
T ss_pred EcccCcchhHHhhhhhhhhhhhhhccccceeee--ecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeec
Confidence 99765 4455554 5678999999999998888 8899999988531 12456778888766 99999
Q ss_pred ECCCCCEEEEEeCCCCEEEE
Q 011916 430 TSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 430 ~spdg~~l~s~s~Dg~I~iW 449 (475)
|+|...+|++++.||+|++|
T Consensus 713 wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 713 WHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ccCCCceEEecCCCceEEee
Confidence 99999999999999999998
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=177.95 Aligned_cols=271 Identities=18% Similarity=0.344 Sum_probs=211.1
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
.++.++|-|+ .-+..+.++.+++||.+.|...+.+. +|.+.|.||+|+.||+.+|+|+.|..|.||...- ...++
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILK 89 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEecccc---cceee
Confidence 5677999997 67777889999999999999888876 9999999999999999999999999999998442 22333
Q ss_pred -CCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 249 -GHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 249 -~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
.|...|.|+.||+ +.|++++-+ ..-+|... .+.+.+. .....|++++|..||++|+.|-.+|+|.|-+-. ++
T Consensus 90 YSH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~--qK~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gE 164 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITHQLASCSLS-DFGLWSPE--QKSVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GE 164 (1081)
T ss_pred eccCCeeeEeecCchHHHhhhcchh-hccccChh--hhhHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCC-CC
Confidence 6999999999996 777777643 45577654 2222222 234568999999999999999999999998644 33
Q ss_pred eeEEEe---ccccceeEEEECCCCC----cEEEEecCCCCCeEEEEECCCCceee-eecCCCCeeEEEEcCCCCeEEEEE
Q 011916 326 PTLRLT---EHTAAVKAIAWSPHQS----SLLASGGGTADRCIRFWNTSNGHQLN-SVDTGSQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 326 ~~~~~~---~h~~~v~~l~~sp~~~----~ll~sg~Gs~d~~I~iwd~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~ 397 (475)
+...+. +...+|.+++|+|... .++++.. ...++.+|.+. |+.+. .-..+-..+|+.+.++|.+++.
T Consensus 165 ek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~Li-- 239 (1081)
T KOG1538|consen 165 EKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVAD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILL-- 239 (1081)
T ss_pred cceEEeCCCCCCCCceEEEecCCCCCCccceEEEEe--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEE--
Confidence 333333 3678999999998642 2333332 55666666654 44443 3345567889999999999999
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
|+.++.+.+|- +.|-.+.++-.....|+.++..|++++++.|+.||+|--|++-...
T Consensus 240 GGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 240 GGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred ccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHHhH
Confidence 99999999997 4577777777778899999999999999999999999999986543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-19 Score=180.29 Aligned_cols=267 Identities=19% Similarity=0.286 Sum_probs=204.6
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCee--eEE----ecCCCCceEEEEeC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKR--VRT----FGGHQTRAGVLAWN 260 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~--~~~----~~~h~~~v~~l~~~ 260 (475)
+.++||++......+.. +.....|++++|+| +..+||.|+.+|.|.+||+..+.. ... ...|...++.+.|.
T Consensus 222 ~~~~vW~~~~p~~Pe~~-~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELV-LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred ceEEEEecCCCCCceEE-EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 47999999887433333 25678999999999 678899999999999999987655 222 23688999999992
Q ss_pred ----CCEEEEEeCCCcEEEEECCCCCccEEEe----c-------CccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC
Q 011916 261 ----SRILSSGSRDRNILQHDLRVSSDYICKL----A-------GHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 261 ----~~~l~sgs~dg~I~iwd~~~~~~~~~~~----~-------~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
+.-+++++.||.|..|+++.-..+...+ . .-...+++++|.+ +-..+++|+.+|.|+.-.....
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~ 380 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY 380 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence 3569999999999999987433221111 1 1123588999988 6678999999999987443322
Q ss_pred c--------eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeeecC-CCCeeEEEEcCCCCeEE
Q 011916 325 Q--------PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS-NGHQLNSVDT-GSQVCNLAWSKNVNELV 394 (475)
Q Consensus 325 ~--------~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~~~-~~~v~~l~~s~~~~~l~ 394 (475)
+ .+..+..|.+.|.++.++|.+..++.+++ |.+++||... ...++..+.. ...+.+++|||....++
T Consensus 381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF 457 (555)
T KOG1587|consen 381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVF 457 (555)
T ss_pred cccccccccccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEE
Confidence 1 23355678999999999999998888885 9999999987 6666666654 44599999999988877
Q ss_pred EEEecCCCeEEEEECCC--CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 395 STHGYSQNQIMVWKYPS--MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~--~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
++ +..+|.|.+||+.. ..++.+...+....+.+.|+++|+.|+.|...|++.+|++......+.
T Consensus 458 ~~-~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l~~~~ 523 (555)
T KOG1587|consen 458 AT-VDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESLAVPS 523 (555)
T ss_pred EE-EcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchhhccC
Confidence 76 77899999999954 345555555666678888999999999999999999999976554443
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-19 Score=176.64 Aligned_cols=290 Identities=20% Similarity=0.314 Sum_probs=227.1
Q ss_pred CCCCCCCCceeEEecCCC--CEEEEEcCCeEEEEECCCC--cEEEEeeC---C-CCCcEEEEEEcCCCCEEEEEeCCCeE
Q 011916 162 APSLQDDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNS--KVTRLCDL---G-PGDSVCSVQWTREGSYISVGTNLGQV 233 (475)
Q Consensus 162 ~p~~~~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~--~~~~~~~~---~-~~~~V~~v~~spdg~~la~g~~dg~v 233 (475)
+--.-++-+|..+.|+|. .+|+++.|+++.+|...+. -......+ + ......+..|+|+++.+++-+..|-.
T Consensus 261 all~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 261 ALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGF 340 (764)
T ss_pred hhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcE
Confidence 333457789999999997 5899999999999988765 33333333 2 23457888999999999999999999
Q ss_pred EEEECCC---CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCC---CccEEEecCccCCEEEEEEcCCCC
Q 011916 234 QVWDGTQ---CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVS---SDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 234 ~iwd~~~---~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
++|..+. ......+.||...|..++|+ |.+|++.+.|.+-+++---.. -+.+.+-+-|...++|+++-+...
T Consensus 341 hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 341 HLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 9998332 13444567999999999997 799999999999999865311 134455566888999999988777
Q ss_pred EEEEEeCCCcEEEEECCC-------------------------------------------Cc-----------------
Q 011916 306 ELASGGNDNQLLVWNQHS-------------------------------------------QQ----------------- 325 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~-------------------------------------------~~----------------- 325 (475)
.+++|.....+++|+... +.
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 889999989999998531 00
Q ss_pred ----------------eeEEEeccccceeEEEECCCCCcEEEEecCC---CCCeEEEEECCCCceeeeec-CCCCeeEEE
Q 011916 326 ----------------PTLRLTEHTAAVKAIAWSPHQSSLLASGGGT---ADRCIRFWNTSNGHQLNSVD-TGSQVCNLA 385 (475)
Q Consensus 326 ----------------~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs---~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~ 385 (475)
.++++.+|...|.+++.+|+++ |++++.-+ ....|++|++.+...+..+. |.-.|+.++
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~ 579 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLA 579 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEE
Confidence 1123457899999999999999 55543211 23469999999988888664 666899999
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCc----eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMA----KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
|+|||++|++ .+.|..+.+|...... .....+.|+--|....|+||+.+++|++.|.+|+||.....
T Consensus 580 FSpdg~~LLs--vsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 580 FSPDGRYLLS--VSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ECCCCcEEEE--eecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999 6689999999874432 23346789999999999999999999999999999999877
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-19 Score=163.89 Aligned_cols=241 Identities=17% Similarity=0.253 Sum_probs=184.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEec
Q 011916 212 VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 212 V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
..|+.|++.|.+||+|+.||.|.|||+.+....+.+.+|..+|.+++| +|+.|+++++|..|.+||+. .+.+.+.+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~-~gs~l~rir 104 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLL-KGSPLKRIR 104 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEecc-CCCceeEEE
Confidence 779999999999999999999999999999999999999999999999 58999999999999999998 455666655
Q ss_pred CccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEec------cccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 290 GHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLRLTE------HTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 290 ~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
...+|....|+|.. +..++.-.+..-.+-++..+. +.+-. ......+..|.+.|+++++ |+..|.+.
T Consensus 105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~g~yIit---GtsKGkll 178 (405)
T KOG1273|consen 105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRRGKYIIT---GTSKGKLL 178 (405)
T ss_pred -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccCCCCEEEE---ecCcceEE
Confidence 57889999999943 344333344445555555422 22211 1112233468899997777 66899999
Q ss_pred EEECCCCceeeeecC--CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce---------EEEecC--CCcceEEEE
Q 011916 363 FWNTSNGHQLNSVDT--GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK---------VSTLTG--HSLRVLYLA 429 (475)
Q Consensus 363 iwd~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~---------~~~l~~--h~~~V~~l~ 429 (475)
++|..+.+++..+.. ...|..+.++..|+.++. .+.|..|+.|++..... ...++. ....-.+++
T Consensus 179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~lii--NtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~cc 256 (405)
T KOG1273|consen 179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLII--NTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCC 256 (405)
T ss_pred EEecchheeeeeeeechheeeeEEEEeccCcEEEE--ecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhhee
Confidence 999999999988753 367999999999999999 88999999999863211 111111 122345688
Q ss_pred ECCCCCEEEEEeC-CCCEEEEecCCCCCCCCcc
Q 011916 430 TSPDGQTIVTGAG-DETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 430 ~spdg~~l~s~s~-Dg~I~iW~~~~~~~~~~~~ 461 (475)
|+.||.|++.++. -..++||.-..+...+.+.
T Consensus 257 fs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILh 289 (405)
T KOG1273|consen 257 FSGDGEYVCAGSARAHALYIWEKSIGSLVKILH 289 (405)
T ss_pred ecCCccEEEeccccceeEEEEecCCcceeeeec
Confidence 9999999988765 4579999998888776653
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=176.95 Aligned_cols=236 Identities=18% Similarity=0.319 Sum_probs=193.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC----CEEEEEeCCCcEEEEECCCC-
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS----RILSSGSRDRNILQHDLRVS- 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~----~~l~sgs~dg~I~iwd~~~~- 281 (475)
+|.+.|.+|...|.|.+||+|+.||+|+||.+.++.+++++. ..+.|.|++|++ .+|+++-.+. +.|.+...+
T Consensus 398 GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~ 475 (733)
T KOG0650|consen 398 GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGD 475 (733)
T ss_pred ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeCccccc
Confidence 899999999999999999999999999999999999999886 345899999964 3444443333 433332111
Q ss_pred -----------------------------------CccEEEecCccCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCC
Q 011916 282 -----------------------------------SDYICKLAGHKSEVCGLKWSHDDRELASGGND---NQLLVWNQHS 323 (475)
Q Consensus 282 -----------------------------------~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D---g~I~iwd~~~ 323 (475)
..-+.....|...|..+.|+..|.+|++...+ ..|.|+++..
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccc
Confidence 01123444577889999999999999997654 4799999987
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeeEEEEcCCCCeEEEEEecCCC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
.+...-|....+.|.++.|+|...+++++ ....|+|||+..+..++.+.++ ..|..++.+|.|..|++ |+.|+
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVa----Tq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~--gs~d~ 629 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVA----TQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLIL--GSYDK 629 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEE----eccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEE--ecCCC
Confidence 77666666677889999999999988886 5799999999998888877655 46889999999999999 89999
Q ss_pred eEEEEECCCC-ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 403 QIMVWKYPSM-AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 403 ~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.++.||+.-. ++..++..|...|+.++|++.-.++++|+.||++.|+.
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH 678 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence 9999999754 56778888999999999999999999999999998874
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-19 Score=166.56 Aligned_cols=268 Identities=17% Similarity=0.271 Sum_probs=195.1
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEE--ecCCC-CceE
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQCKRVRT--FGGHQ-TRAG 255 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~~~~~~~--~~~h~-~~v~ 255 (475)
++++-+.|.|++||..+++..+.+. ++...+..+.|.. ....+.+|+.||+|++||+........ +..+. .+..
T Consensus 43 vav~lSngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 43 VAVSLSNGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred EEEEecCCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 4444558999999999999888886 7788888999977 457889999999999999987655443 34555 4566
Q ss_pred EEEeC--CCEEEEEe----CCCcEEEEECCCCCccEE-EecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc--
Q 011916 256 VLAWN--SRILSSGS----RDRNILQHDLRVSSDYIC-KLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQ-- 325 (475)
Q Consensus 256 ~l~~~--~~~l~sgs----~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~-- 325 (475)
+++-+ ++++++|. .+-.|.+||+|...+.+. -...|...|+++.|+| +.++|++|+.||.|.++|++...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 77764 57777775 467899999997766443 4567999999999999 67799999999999999998542
Q ss_pred -eeEEEeccccceeEEEECCCCC-cEEEEecCCCCCeEEEEECCCCceeeeecCC-------------CCeeEEEEcCCC
Q 011916 326 -PTLRLTEHTAAVKAIAWSPHQS-SLLASGGGTADRCIRFWNTSNGHQLNSVDTG-------------SQVCNLAWSKNV 390 (475)
Q Consensus 326 -~~~~~~~h~~~v~~l~~sp~~~-~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-------------~~v~~l~~s~~~ 390 (475)
.+...-.|...|..+.|..++. .+.+.. ......+|++..+.+...+... ..+... .+|.+
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clT---H~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~-~~~~~ 277 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLT---HMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE-HSPGD 277 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEE---ccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec-ccCCC
Confidence 2333445788899999998882 244432 7999999999988866554322 112222 22333
Q ss_pred CeEEEEEecCCCeEEEEECC------CCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 391 NELVSTHGYSQNQIMVWKYP------SMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~------~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.-+..+.|..-|...++-+. ..+.+..+.+ |..-|.++.|...+..+.||++||.|.+|....
T Consensus 278 ~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 278 KDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred cceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecCC
Confidence 33333324435555554432 2355666776 777789999998899999999999999999643
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-19 Score=165.08 Aligned_cols=245 Identities=19% Similarity=0.327 Sum_probs=190.6
Q ss_pred CCCCCceeEEecCCC------CEEEEE---c-CCeEEEEEC-CCCcEEEEeeC--CCCCcEEEEEEcC-CCCEEEEEeCC
Q 011916 165 LQDDFYLNLVDWSSQ------NVLAVG---L-GTCVYLWTA-SNSKVTRLCDL--GPGDSVCSVQWTR-EGSYISVGTNL 230 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~------~~la~~---~-~~~V~lw~~-~~~~~~~~~~~--~~~~~V~~v~~sp-dg~~la~g~~d 230 (475)
..+++.|....|.+. .++|+- . +|...+.-+ ++|++.....+ +|.+.|..++|+| +...||+|+.|
T Consensus 24 CYddIrVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD 103 (472)
T KOG0303|consen 24 CYDDIRVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSED 103 (472)
T ss_pred hhcceeeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCC
Confidence 346777888888753 344442 2 233333322 33443332222 8999999999999 66789999999
Q ss_pred CeEEEEECCCC-------eeeEEecCCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEE
Q 011916 231 GQVQVWDGTQC-------KRVRTFGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKW 300 (475)
Q Consensus 231 g~v~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 300 (475)
.+|.||.+..+ +.+..+.+|..+|.-++|++ +.|++++.|.+|.+|++. .+..+..+. |...|.++.|
T Consensus 104 ~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~-tgeali~l~-hpd~i~S~sf 181 (472)
T KOG0303|consen 104 TKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVG-TGEALITLD-HPDMVYSMSF 181 (472)
T ss_pred ceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEecc-CCceeeecC-CCCeEEEEEe
Confidence 99999998654 45677889999999999985 899999999999999998 455555555 9999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccc-eeEEEECCCCCcEEEEec-CCCCCeEEEEECCCC---ceeeee
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAA-VKAIAWSPHQSSLLASGG-GTADRCIRFWNTSNG---HQLNSV 375 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~-v~~l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~---~~~~~~ 375 (475)
+.||.+|++.+.|..|+|||.++++.+..-..|.+. -..+.|-.++. ++++|. ...++.+.+||..+- -.+..+
T Consensus 182 n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 182 NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 999999999999999999999999998887777653 45667888888 777753 234789999986653 345667
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc
Q 011916 376 DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 376 ~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~ 413 (475)
++.+.|.---|.++.+.++.+ |-.|+.|+.|.+.+..
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~-GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLC-GKGDSSIRYFEITNEP 297 (472)
T ss_pred ccCCceEEeeecCCCCEEEEE-ecCCcceEEEEecCCC
Confidence 788888888888888888776 8899999999987654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-19 Score=172.65 Aligned_cols=121 Identities=22% Similarity=0.384 Sum_probs=98.6
Q ss_pred ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-------eeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 334 TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-------LNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 334 ~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-------~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
...|+.+.|.|....-++.++ .||.|++|.+..+-. ...+ .|...|+.+.|+|-...++++ ...|-+|+
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~--ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~-asyd~Ti~ 703 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVAT--DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAV-ASYDSTIE 703 (1012)
T ss_pred CceeeecccCCCChHHeeecc--cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhh-hhccceee
Confidence 346788999997766666654 899999999876432 2222 367789999999965544433 66799999
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+||+.+++....+.+|++.|.+++|||||+.+++.+.||+|++|+-..++..
T Consensus 704 lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 704 LWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred eeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 9999999999999999999999999999999999999999999998766543
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=169.55 Aligned_cols=245 Identities=17% Similarity=0.230 Sum_probs=201.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeeEEecCCCCceEEEEe--CCC-EEEEEeCCCcEEEEECCCCCc
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ--CKRVRTFGGHQTRAGVLAW--NSR-ILSSGSRDRNILQHDLRVSSD 283 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~--~~~~~~~~~h~~~v~~l~~--~~~-~l~sgs~dg~I~iwd~~~~~~ 283 (475)
.+.|++|.|+|....|++++.||+++||.+.. ...+..+.-...+|.+.+| +|+ .++++++...++.||+.....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 47899999999999999999999999998763 4556666666778888877 566 899999999999999974332
Q ss_pred -cEEEecCcc-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 284 -YICKLAGHK-SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 284 -~~~~~~~h~-~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
.+..+.++. ..+.....++++++||..|..|.|.+....+++.+..++ -.+.|..++|+.+++.|+++|+ +|.|
T Consensus 293 ~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~---~GeV 368 (514)
T KOG2055|consen 293 TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGG---TGEV 368 (514)
T ss_pred ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcC---CceE
Confidence 223334443 357788899999999999999999999999999888876 4788999999999999999874 8999
Q ss_pred EEEECCCCceeeeecCCCCe--eEEEEcCCCCeEEEEEecCCCeEEEEECCC------CceEEEecCCCcceEEEEECCC
Q 011916 362 RFWNTSNGHQLNSVDTGSQV--CNLAWSKNVNELVSTHGYSQNQIMVWKYPS------MAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~~~~~v--~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~------~~~~~~l~~h~~~V~~l~~spd 433 (475)
.+||++...+++.+...+.| +.++.++++.+|++ |+..|.|.|||..+ .+++..+..-...|+.|+|++|
T Consensus 369 ~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~--GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d 446 (514)
T KOG2055|consen 369 YVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT--GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHD 446 (514)
T ss_pred EEEecCCcceEEEEeecCccceeeeeecCCCceEEe--ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcc
Confidence 99999999999998766655 55777799999999 99999999999753 4667777777888999999999
Q ss_pred CCEEEEEeC--CCCEEEEecCCCCCCCC
Q 011916 434 GQTIVTGAG--DETLRFWNVFPSLKAPA 459 (475)
Q Consensus 434 g~~l~s~s~--Dg~I~iW~~~~~~~~~~ 459 (475)
+++||.++. +..+|+-.+..-.....
T Consensus 447 ~qiLAiaS~~~knalrLVHvPS~TVFsN 474 (514)
T KOG2055|consen 447 AQILAIASRVKKNALRLVHVPSCTVFSN 474 (514)
T ss_pred hhhhhhhhhccccceEEEeccceeeecc
Confidence 999988765 67888888765554433
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-18 Score=158.39 Aligned_cols=268 Identities=19% Similarity=0.316 Sum_probs=208.5
Q ss_pred eeEEecCCC--CEEEEEcCCeEEEEECCCCc------------EEEEeeCCCCCcEEEEEEc-------CCCCEEEEEeC
Q 011916 171 LNLVDWSSQ--NVLAVGLGTCVYLWTASNSK------------VTRLCDLGPGDSVCSVQWT-------REGSYISVGTN 229 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~~~~V~lw~~~~~~------------~~~~~~~~~~~~V~~v~~s-------pdg~~la~g~~ 229 (475)
+..+.|+|+ -+|+-+.++.+.+|++...- ....+.....+.|...+|- |+..++|+.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 445889998 37888889999999985321 1122222446788888886 56789999999
Q ss_pred CCeEEEEECCCCeeeEEecC--CCC---ceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccE--EE-----ecCccCCE
Q 011916 230 LGQVQVWDGTQCKRVRTFGG--HQT---RAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYI--CK-----LAGHKSEV 295 (475)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~--h~~---~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~--~~-----~~~h~~~V 295 (475)
+.-|++||.-+|+....+.+ |.. ...+++| +|.+|++| ....|+++|+...+... .. ..+..+-|
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~gii 210 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGII 210 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccccccccee
Confidence 99999999999998887763 443 4457888 46777765 56899999994344321 11 22336779
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceee
Q 011916 296 CGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQLN 373 (475)
Q Consensus 296 ~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~ 373 (475)
.+++|+| +...+|+|+....+-||.-..+.+++.+.+|.+.|+.+.|+++|..|++-+ -.|..|..||++.- .++.
T Consensus 211 sc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGa--Rk~dkIl~WDiR~~~~pv~ 288 (406)
T KOG2919|consen 211 SCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGA--RKDDKILCWDIRYSRDPVY 288 (406)
T ss_pred eeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccc--cCCCeEEEEeehhccchhh
Confidence 9999999 566999999999999999999999999999999999999999999776643 37899999999864 3444
Q ss_pred eec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 374 SVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 374 ~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
.+. ...+-.-+...|+++.|++ |..+|.|++||+.. +..+..+..|...|+.++++|--.+++|++..
T Consensus 289 ~L~rhv~~TNQRI~FDld~~~~~Las--G~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 289 ALERHVGDTNQRILFDLDPKGEILAS--GDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhhccCccceEEEecCCCCceeec--cCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 442 2234445667899999999 99999999999988 66688888899999999999998889888765
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.6e-19 Score=165.53 Aligned_cols=247 Identities=18% Similarity=0.314 Sum_probs=188.5
Q ss_pred CCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC---------eeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEE
Q 011916 208 PGDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQC---------KRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQ 275 (475)
Q Consensus 208 ~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~---------~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~i 275 (475)
...+|..+.|.++.. .||+|+.|..|+||.+..+ +.+..+..|...|+++.|+ |++|++|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 457899999998765 9999999999999987543 2234567899999999996 579999999999999
Q ss_pred EECC--------C-----C--CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEE
Q 011916 276 HDLR--------V-----S--SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAI 340 (475)
Q Consensus 276 wd~~--------~-----~--~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l 340 (475)
|... . . ......+.+|..+|..++|+++++++++++.|+.+++||+..|..+..+.+|...|..+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV 171 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence 9765 1 1 12345678899999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------------------C----CCCeeEEEEcCCCCeEEEE
Q 011916 341 AWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--------------------T----GSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 341 ~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--------------------~----~~~v~~l~~s~~~~~l~~~ 396 (475)
+|.|.+++++.-+ .|+..+.+.+...+.+..+. + ..-...++|+|+|..|++-
T Consensus 172 awDpl~qyv~s~s---~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 172 AWDPLNQYVASKS---SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred ecchhhhhhhhhc---cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc
Confidence 9999999776654 57766666654332222111 0 0113344566666554431
Q ss_pred E-------------------------------------------------------------------ecCCCeEEEEEC
Q 011916 397 H-------------------------------------------------------------------GYSQNQIMVWKY 409 (475)
Q Consensus 397 ~-------------------------------------------------------------------g~~dg~I~iwd~ 409 (475)
. -...+.|+|||.
T Consensus 249 ag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydt 328 (434)
T KOG1009|consen 249 AGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDT 328 (434)
T ss_pred cceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEecc
Confidence 1 012456677777
Q ss_pred CCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 410 PSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 410 ~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
++..++..+.+ |-..|+.++|++||.+|+..+.||...+-.+++.+.-
T Consensus 329 q~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 329 QTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 77666666654 8889999999999999999999999888877766544
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-19 Score=167.46 Aligned_cols=243 Identities=19% Similarity=0.251 Sum_probs=194.9
Q ss_pred CCCcEEEEEEcCCC--CEEEEEeCCCeEEEEECCCC----eeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEEC
Q 011916 208 PGDSVCSVQWTREG--SYISVGTNLGQVQVWDGTQC----KRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDL 278 (475)
Q Consensus 208 ~~~~V~~v~~spdg--~~la~g~~dg~v~iwd~~~~----~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~ 278 (475)
+.+.|++++|+|.. +++|+|...|.|-+||+.+. ..+..+..|...|.++.|+ ...+++.+.||+|++-|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 46899999999944 68999999999999999532 3345677899999999995 479999999999999999
Q ss_pred CCCC-ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEeccccceeEEEECCCCCcEEEEecCC
Q 011916 279 RVSS-DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP-TLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 279 ~~~~-~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
+... ..+..+......++++.|+.+...++.++.=|...+||+++... ...+.-|...|..|+++|-..+++++++
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s-- 342 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATAS-- 342 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecc--
Confidence 7322 22333333556688899999888888888878999999997655 5566678889999999999999999987
Q ss_pred CCCeEEEEECCCCc-----eeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC----CCceEEEecCCCc----
Q 011916 357 ADRCIRFWNTSNGH-----QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP----SMAKVSTLTGHSL---- 423 (475)
Q Consensus 357 ~d~~I~iwd~~~~~-----~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~----~~~~~~~l~~h~~---- 423 (475)
.|++.+|||++.-. .+..+.|...|.+..|||.+..|++ .+.|+.|+|||.. ...+..++. |..
T Consensus 343 ~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~T--T~~D~~IRv~dss~~sa~~~p~~~I~-Hn~~t~R 419 (498)
T KOG4328|consen 343 LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLT--TCQDNEIRVFDSSCISAKDEPLGTIP-HNNRTGR 419 (498)
T ss_pred cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEe--eccCCceEEeecccccccCCccceee-ccCcccc
Confidence 99999999997532 3666789999999999999999888 5689999999983 344444443 322
Q ss_pred --ceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 424 --RVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 424 --~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
......|.||..++++|..-..|-|+|-..++
T Consensus 420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred cccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 13456899999999999888888888877666
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-18 Score=153.01 Aligned_cols=276 Identities=15% Similarity=0.277 Sum_probs=203.1
Q ss_pred CCCceeEEecCC----CCEEEEEc-----CCeEEEEE--CCCCcEEEEeeCCCCCcEEEEEEcCCC-----CEEEEEeCC
Q 011916 167 DDFYLNLVDWSS----QNVLAVGL-----GTCVYLWT--ASNSKVTRLCDLGPGDSVCSVQWTREG-----SYISVGTNL 230 (475)
Q Consensus 167 ~d~~v~~l~ws~----~~~la~~~-----~~~V~lw~--~~~~~~~~~~~~~~~~~V~~v~~spdg-----~~la~g~~d 230 (475)
..+.+.+++|+. +..+|+|. .+.|.|-. .++++.+....+.|.-+++.+.|.|+. ++||+.+.
T Consensus 43 ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D- 121 (364)
T KOG0290|consen 43 APWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD- 121 (364)
T ss_pred CCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC-
Confidence 345677799993 44566654 35555554 456676666667889999999999976 35666544
Q ss_pred CeEEEEECCCC--eee--EEe-----cCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCC--CccEEEecCccCCEE
Q 011916 231 GQVQVWDGTQC--KRV--RTF-----GGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVS--SDYICKLAGHKSEVC 296 (475)
Q Consensus 231 g~v~iwd~~~~--~~~--~~~-----~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~--~~~~~~~~~h~~~V~ 296 (475)
.+++|.+... +.. ..+ ..+..+++++.|| +++|.+++-|-+..|||++.. +.....+.+|..+|.
T Consensus 122 -~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~ 200 (364)
T KOG0290|consen 122 -FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVY 200 (364)
T ss_pred -eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCccee
Confidence 7999998632 111 111 2466789999995 699999999999999999963 345677889999999
Q ss_pred EEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEec---cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-e
Q 011916 297 GLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLRLTE---HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-Q 371 (475)
Q Consensus 297 ~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~ 371 (475)
.|+|...+ +.+|+.|.||.|+++|++..+.-..+.+ ...+...++|++...+++++-. .....|.|.|++... .
T Consensus 201 DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~-~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 201 DIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFA-MDSNKVVILDIRVPCTP 279 (364)
T ss_pred EEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhh-cCCceEEEEEecCCCcc
Confidence 99999855 4899999999999999997654333322 2567889999998888777763 356789999998643 4
Q ss_pred eeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------EEEecCCCcceEEEEECC-CCCEEEEEeCC
Q 011916 372 LNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK------VSTLTGHSLRVLYLATSP-DGQTIVTGAGD 443 (475)
Q Consensus 372 ~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~------~~~l~~h~~~V~~l~~sp-dg~~l~s~s~D 443 (475)
+..+ .|.+.|..++|.|....-+++ +++|.++.+||+.+.-. +..+. ..+.|+.+.|++ .+..|+.+..
T Consensus 280 va~L~~H~a~VNgIaWaPhS~~hict-aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~- 356 (364)
T KOG0290|consen 280 VARLRNHQASVNGIAWAPHSSSHICT-AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG- 356 (364)
T ss_pred eehhhcCcccccceEecCCCCceeee-cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec-
Confidence 4444 588999999999988777666 55899999999976533 22222 567899999996 5667777654
Q ss_pred CCEEE
Q 011916 444 ETLRF 448 (475)
Q Consensus 444 g~I~i 448 (475)
..+.+
T Consensus 357 kklei 361 (364)
T KOG0290|consen 357 KKLEI 361 (364)
T ss_pred CeeeE
Confidence 44444
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-16 Score=159.85 Aligned_cols=281 Identities=29% Similarity=0.534 Sum_probs=222.4
Q ss_pred CCceeEEecCCCC-EEEEEc--CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCee
Q 011916 168 DFYLNLVDWSSQN-VLAVGL--GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 168 d~~v~~l~ws~~~-~la~~~--~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~~ 243 (475)
.-.+..++|+++. .++.+. ++.+++|+...+....... +|...|.+++|+|++. .++.++.|+.|++||...+..
T Consensus 155 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~ 233 (466)
T COG2319 155 SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKL 233 (466)
T ss_pred cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcE
Confidence 3456689999874 444443 8999999999977777765 5889999999999998 555558999999999888888
Q ss_pred eE-EecCCCCce-EEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 244 VR-TFGGHQTRA-GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 244 ~~-~~~~h~~~v-~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
+. .+.+|...+ ..+..++..+++++.|+.+++|+++........+..|...|.++.|+|++..+++++.|+.+.+||.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~ 313 (466)
T COG2319 234 LRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDL 313 (466)
T ss_pred EeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEc
Confidence 87 688888874 3333356788899999999999998555434444678999999999998888888999999999999
Q ss_pred CCCceeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec
Q 011916 322 HSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 322 ~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
.......... .|...+..+.|.+++..++..+. .|+.+.+|++..............+..+.+.+ . ......+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 389 (466)
T COG2319 314 ETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS--DDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP-D-GRVVSSGS 389 (466)
T ss_pred CCCceEEEeeecccCCceEEEEECCCCCEEEEeec--CCCcEEeeecCCCceeEEecCCceEEEEEECC-C-CCEEEEec
Confidence 9887766665 78888999999433244555433 67999999998887444444444488999999 6 55443357
Q ss_pred CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.++.+.+|+............+...+....+++++..+++++.++.+++|++..
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 390 TDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred CCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 889999999998888777765547899999999999999999999999999987
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-17 Score=163.94 Aligned_cols=267 Identities=12% Similarity=0.147 Sum_probs=179.5
Q ss_pred EEEEcCCeEEEEECCC-CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCC-Cee--eEEecCCCCceEE
Q 011916 182 LAVGLGTCVYLWTASN-SKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQ-CKR--VRTFGGHQTRAGV 256 (475)
Q Consensus 182 la~~~~~~V~lw~~~~-~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~-~~~--~~~~~~h~~~v~~ 256 (475)
++.+.++.|++|++.+ ++...+..+...+....++++|++++|++++. ++.|.+|++.. ++. +.... .......
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~ 84 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTH 84 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceE
Confidence 3445689999999964 44333333344566788999999999887754 78899999863 332 22222 2234567
Q ss_pred EEeC--CCEEEEEe-CCCcEEEEECCCCCc---cEEEecCccCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeEE
Q 011916 257 LAWN--SRILSSGS-RDRNILQHDLRVSSD---YICKLAGHKSEVCGLKWSHDDRELASGG-NDNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 257 l~~~--~~~l~sgs-~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~~~~~lasg~-~Dg~I~iwd~~~~~~~~~ 329 (475)
++++ +++|++++ .++.|.+|++...+. .+..+ .+.....+++++|+++++++++ .++.|.+||+.+...+..
T Consensus 85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~ 163 (330)
T PRK11028 85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA 163 (330)
T ss_pred EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence 7775 66777665 488999999974332 22222 2334567789999999886554 568999999976332211
Q ss_pred -----Ee-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC--Cc--eeeeecC-------CCCeeEEEEcCCCCe
Q 011916 330 -----LT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN--GH--QLNSVDT-------GSQVCNLAWSKNVNE 392 (475)
Q Consensus 330 -----~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~--~~--~~~~~~~-------~~~v~~l~~s~~~~~ 392 (475)
.. ........++|+|++++++++.. .++.|.+|++.. ++ .+..+.. ......+.++|++++
T Consensus 164 ~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~--~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 164 QEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE--LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred cCCCceecCCCCCCceEEECCCCCEEEEEec--CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 11 12334678999999998888754 589999999973 33 2333321 112346889999999
Q ss_pred EEEEEecCCCeEEEEECCCCceEEEecCCC---cceEEEEECCCCCEEEEEeC-CCCEEEEecCC
Q 011916 393 LVSTHGYSQNQIMVWKYPSMAKVSTLTGHS---LRVLYLATSPDGQTIVTGAG-DETLRFWNVFP 453 (475)
Q Consensus 393 l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~ 453 (475)
++++ ...++.|.+|++.......++.++. .....+.++|||++|+++.. +++|.+|+++.
T Consensus 242 lyv~-~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 242 LYAC-DRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred EEEe-cCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 9984 3457899999986543222222221 24567899999999998775 89999999864
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-19 Score=174.79 Aligned_cols=244 Identities=20% Similarity=0.343 Sum_probs=181.4
Q ss_pred EEEEEcC---CCCEEEEEeCCCeEEEEECCCCee------eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCC
Q 011916 213 CSVQWTR---EGSYISVGTNLGQVQVWDGTQCKR------VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 213 ~~v~~sp---dg~~la~g~~dg~v~iwd~~~~~~------~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~ 281 (475)
.+..|++ ....||++.+||.|.++|...... +.....|...|..+.|- ...|++++.|.++++||+. .
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk-~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVK-T 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeec-c
Confidence 3456655 346899999999999999765432 34556899999999994 4789999999999999998 4
Q ss_pred CccEEE--ecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCc--------------------e-------eEEEe
Q 011916 282 SDYICK--LAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQ--------------------P-------TLRLT 331 (475)
Q Consensus 282 ~~~~~~--~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~--------------------~-------~~~~~ 331 (475)
...+.. +.+|.+.|.+++|.+ +...|++|+.||.|.|||++-.. + +....
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 444444 889999999999999 55689999999999999987321 1 11112
Q ss_pred ccccceeE---EEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---------C---CCCeeEEEEcCCCCeEEEE
Q 011916 332 EHTAAVKA---IAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---------T---GSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 332 ~h~~~v~~---l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---------~---~~~v~~l~~s~~~~~l~~~ 396 (475)
.+...|.+ +.+..|...|+.+|+ .|+.|+|||+++.......+ + ...+.++.....|.+|++
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga--~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~A- 288 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGA--ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFA- 288 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccC--CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEE-
Confidence 24444544 555567675666654 79999999999765543321 1 235788888899999999
Q ss_pred EecCCCeEEEEECCCC--ceEEEecCCCcce--EEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 397 HGYSQNQIMVWKYPSM--AKVSTLTGHSLRV--LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~--~~~~~l~~h~~~V--~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
.+.|+.|++|++.+. .++..+.++...- ..-..+||+.+|++|+.|+..++|.+..........
T Consensus 289 -sCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l 356 (720)
T KOG0321|consen 289 -SCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL 356 (720)
T ss_pred -EecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence 667999999999765 3455555543221 122468999999999999999999999887766543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.5e-17 Score=160.20 Aligned_cols=281 Identities=29% Similarity=0.490 Sum_probs=219.7
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCCc-EEEEeeCCCCCcEEEEEE-cCCCC-EEEEEeC-CCeEEEEECCC-
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSK-VTRLCDLGPGDSVCSVQW-TREGS-YISVGTN-LGQVQVWDGTQ- 240 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~-~~~~~~~~~~~~V~~v~~-spdg~-~la~g~~-dg~v~iwd~~~- 240 (475)
...+..+.+.+. .++..+.++.+.+|+...+. ....+...+...+..+.+ ++++. +++..+. |+.+.+|+...
T Consensus 65 ~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 144 (466)
T COG2319 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTP 144 (466)
T ss_pred cceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCC
Confidence 344566666654 45555669999999999886 444443222246777777 88887 5555445 89999999998
Q ss_pred CeeeEEecCCCCceEEEEeC--CCEEEEEeC-CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEEEeCCCcE
Q 011916 241 CKRVRTFGGHQTRAGVLAWN--SRILSSGSR-DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQL 316 (475)
Q Consensus 241 ~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~I 316 (475)
......+..|...|..++|. +..+++++. |+.+.+|++. ....+..+.+|...|.+++|+|++. .+++++.|+.|
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i 223 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR-TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTI 223 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcC-CCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcE
Confidence 88888999999999999994 467888875 9999999998 4667778888999999999999998 55555999999
Q ss_pred EEEECCCCceeE-EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeee-cCCCCeeEEEEcCCCCeE
Q 011916 317 LVWNQHSQQPTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LNSV-DTGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 317 ~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~~~-~~~~~v~~l~~s~~~~~l 393 (475)
++||...+..+. .+..|...+ ...|+|++..++ +++ .|+.+++|++..... +..+ .+...+.++.|.|++..+
T Consensus 224 ~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 224 RLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLA-SGS--SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred EEEECCCCcEEeeecCCCCcce-eEeECCCCCEEE-Eec--CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 999998777777 577788775 448999995444 544 899999999987665 4444 457889999999988888
Q ss_pred EEEEecCCCeEEEEECCCCceEEEec--CCCcceEEEEECCCCCEEEEE-eCCCCEEEEecCCCC
Q 011916 394 VSTHGYSQNQIMVWKYPSMAKVSTLT--GHSLRVLYLATSPDGQTIVTG-AGDETLRFWNVFPSL 455 (475)
Q Consensus 394 ~~~~g~~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iW~~~~~~ 455 (475)
++ +..++.+.+|+..+........ .|...+..+.|.+++..++.+ ..|+.+.+|++....
T Consensus 300 ~~--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 300 AS--GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EE--eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 88 5556889999998887777665 788889999994343566666 688999999998877
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-18 Score=156.02 Aligned_cols=241 Identities=19% Similarity=0.352 Sum_probs=183.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC------------eeeEEec-CCCCceEEEEeC---------CCEEEEE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQC------------KRVRTFG-GHQTRAGVLAWN---------SRILSSG 267 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~------------~~~~~~~-~h~~~v~~l~~~---------~~~l~sg 267 (475)
.......|+|||..|++-+.|..+.+|++... +...++. .....|...+|- ..++++.
T Consensus 50 nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s 129 (406)
T KOG2919|consen 50 NFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS 129 (406)
T ss_pred hhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence 44557899999999999999999999997421 1111222 234567888881 3789999
Q ss_pred eCCCcEEEEECCCCCccEEEecC--ccC---CEEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCce--eEEEe-----ccc
Q 011916 268 SRDRNILQHDLRVSSDYICKLAG--HKS---EVCGLKWSHDDRELASGGNDNQLLVWNQ-HSQQP--TLRLT-----EHT 334 (475)
Q Consensus 268 s~dg~I~iwd~~~~~~~~~~~~~--h~~---~V~~l~~s~~~~~lasg~~Dg~I~iwd~-~~~~~--~~~~~-----~h~ 334 (475)
+++.-|++||.- .++....+.+ |.. ...+++|+|||.+|+.|.. ..|+++|+ +.|+. +.... +..
T Consensus 130 sr~~PIh~wdaf-tG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~c~vy~t~~~~k~gq~ 207 (406)
T KOG2919|consen 130 SRDQPIHLWDAF-TGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRDCPVYTTVTKGKFGQK 207 (406)
T ss_pred cccCceeeeecc-ccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCCCcchhhhhccccccc
Confidence 999999999997 4554444433 433 3468999999999998765 79999999 55532 22211 236
Q ss_pred cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-C
Q 011916 335 AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-M 412 (475)
Q Consensus 335 ~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~ 412 (475)
+-+.+++|+|....++++|+ ....+-||.-..+.++..+ .+++.|+.++|.++|+.|++. +..+-.|..||++. .
T Consensus 208 giisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsG-aRk~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 208 GIISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSG-ARKDDKILCWDIRYSR 284 (406)
T ss_pred ceeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccc-ccCCCeEEEEeehhcc
Confidence 77899999999998899876 8999999998888888776 578899999999999999983 33577899999975 4
Q ss_pred ceEEEecCCCc-c--eEEEEECCCCCEEEEEeCCCCEEEEecCC-CC
Q 011916 413 AKVSTLTGHSL-R--VLYLATSPDGQTIVTGAGDETLRFWNVFP-SL 455 (475)
Q Consensus 413 ~~~~~l~~h~~-~--V~~l~~spdg~~l~s~s~Dg~I~iW~~~~-~~ 455 (475)
..+..+..|.+ . -......|+|++|++|+.||.|++||+.. +.
T Consensus 285 ~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 285 DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 56677777755 2 22345578999999999999999999987 44
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-18 Score=159.03 Aligned_cols=229 Identities=20% Similarity=0.359 Sum_probs=176.5
Q ss_pred CCCEEEEEe---CCCeEEEEECC-CCee---eEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCC------c
Q 011916 220 EGSYISVGT---NLGQVQVWDGT-QCKR---VRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSS------D 283 (475)
Q Consensus 220 dg~~la~g~---~dg~v~iwd~~-~~~~---~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~------~ 283 (475)
+.++||+.. ..|...+.-+. +|+. .-.+.+|.+.|..++|+ .+.|++|+.|.+|.||++...+ +
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte 122 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE 122 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence 455665532 22344444332 3332 33466999999999994 5899999999999999996433 4
Q ss_pred cEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 284 YICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
.+..+.+|...|.-++|+| -.+.|++++.|++|.+|++.+++.+.++. |...|.++.|+-+|..+++++ .|..|+
T Consensus 123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttc---kDKkvR 198 (472)
T KOG0303|consen 123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTC---KDKKVR 198 (472)
T ss_pred ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeec---ccceeE
Confidence 5788999999999999999 45689999999999999999999988887 999999999999999666655 899999
Q ss_pred EEECCCCceeeeec-C-CCCeeEEEEcCCCCeEEEEEec---CCCeEEEEECCCCceE---EEecCCCcceEEEEECCCC
Q 011916 363 FWNTSNGHQLNSVD-T-GSQVCNLAWSKNVNELVSTHGY---SQNQIMVWKYPSMAKV---STLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 363 iwd~~~~~~~~~~~-~-~~~v~~l~~s~~~~~l~~~~g~---~dg~I~iwd~~~~~~~---~~l~~h~~~V~~l~~spdg 434 (475)
|||.++++.+..-. | +..-....|-.+|. ++++ |+ ++.++-+||..+.+.- .++. ....|.---|.+|.
T Consensus 199 v~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tT-Gfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt 275 (472)
T KOG0303|consen 199 VIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTT-GFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDT 275 (472)
T ss_pred EEcCCCCcEeeecccccCCCcceeEEeccCc-eeee-ccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCC
Confidence 99999999988763 2 34566677888888 4443 65 4678999998776543 3333 34457767788998
Q ss_pred CEEEEEe-CCCCEEEEecCCCC
Q 011916 435 QTIVTGA-GDETLRFWNVFPSL 455 (475)
Q Consensus 435 ~~l~s~s-~Dg~I~iW~~~~~~ 455 (475)
..|+.++ +|+.||.|.+....
T Consensus 276 ~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 276 SIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred CEEEEEecCCcceEEEEecCCC
Confidence 8777655 69999999998766
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-18 Score=147.84 Aligned_cols=244 Identities=16% Similarity=0.248 Sum_probs=185.0
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCC
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQ----------CKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~ 280 (475)
.|.+-+|+|.+++|++|..+|.|.+..+.. ...+...++|.++|..++|...+|++|+. |.|+-|..+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E 90 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNE 90 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehh
Confidence 456668999999999999999999998753 23445567999999999999888888876 9999998763
Q ss_pred CCccE-------EEecCcc-----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCc
Q 011916 281 SSDYI-------CKLAGHK-----SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSS 348 (475)
Q Consensus 281 ~~~~~-------~~~~~h~-----~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ 348 (475)
..+.. .....|. -+|+++-..|..+-++.++.|+.++-||+++|+...++++|.+.|.+++--.....
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcc
Confidence 22210 1111222 46899999998888888889999999999999999999999999999998544444
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCC-----------CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q 011916 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTG-----------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST 417 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-----------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~ 417 (475)
++. |.+||++++||+++++++..++.. ..|.+++ -+...+++ | ....+.+|.+++.+....
T Consensus 171 ils---G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvC--G-gGp~lslwhLrsse~t~v 242 (325)
T KOG0649|consen 171 ILS---GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVC--G-GGPKLSLWHLRSSESTCV 242 (325)
T ss_pred eee---cCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEe--c-CCCceeEEeccCCCceEE
Confidence 555 449999999999999999888522 2344444 44557776 4 356799999999988877
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccCCcc
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSL 466 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v 466 (475)
+. -..+|..+.|- ...+++++....|.-|.+..-...........+
T Consensus 243 fp-ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c 288 (325)
T KOG0649|consen 243 FP-IPARVHLVDFV--DDCVLIGGEGNHVQSYTLNGVLQANIPVESTAC 288 (325)
T ss_pred Ee-cccceeEeeee--cceEEEeccccceeeeeeccEEEEeccCCccce
Confidence 75 45567788884 447788888888999988766555554444433
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.2e-17 Score=149.37 Aligned_cols=234 Identities=16% Similarity=0.339 Sum_probs=175.4
Q ss_pred eeEEecC--CCCEEEEEcCCeEEEEECCCCc----EEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC---
Q 011916 171 LNLVDWS--SQNVLAVGLGTCVYLWTASNSK----VTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGT--- 239 (475)
Q Consensus 171 v~~l~ws--~~~~la~~~~~~V~lw~~~~~~----~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~--- 239 (475)
++++.|. +.++++++.|+.|.|||..... +..... .|.+.|..|.|.+ -|+.+|+++.|+++.||.-.
T Consensus 16 ihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~ 94 (361)
T KOG2445|consen 16 IHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS 94 (361)
T ss_pred eeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeeeeecccc
Confidence 5556665 5689999999999999964432 233333 6899999999976 68999999999999999842
Q ss_pred ------CCeeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCcc-----EEEe-------cCccCCEEE
Q 011916 240 ------QCKRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDY-----ICKL-------AGHKSEVCG 297 (475)
Q Consensus 240 ------~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~-----~~~~-------~~h~~~V~~ 297 (475)
......++......|+.+.|. |-.|++++.||.++||+.-..... ...+ ..+...-.|
T Consensus 95 ~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~C 174 (361)
T KOG2445|consen 95 EEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFC 174 (361)
T ss_pred cccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceE
Confidence 112345666778899999995 568999999999999987533221 1112 246677889
Q ss_pred EEEcC---CCCEEEEEeCC-----CcEEEEECCCCc----eeEEEeccccceeEEEECCCC---CcEEEEecCCCCCeEE
Q 011916 298 LKWSH---DDRELASGGND-----NQLLVWNQHSQQ----PTLRLTEHTAAVKAIAWSPHQ---SSLLASGGGTADRCIR 362 (475)
Q Consensus 298 l~~s~---~~~~lasg~~D-----g~I~iwd~~~~~----~~~~~~~h~~~v~~l~~sp~~---~~ll~sg~Gs~d~~I~ 362 (475)
+.|++ ...+||+|+.+ +.++||...... .+.++.+|..+|++|+|.|.- .++++++. .|| |+
T Consensus 175 vsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~--kDg-v~ 251 (361)
T KOG2445|consen 175 VSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT--KDG-VR 251 (361)
T ss_pred EeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee--cCc-EE
Confidence 99998 34578888765 588999876432 345677899999999999963 35777765 899 99
Q ss_pred EEECCCCc--------------------eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 363 FWNTSNGH--------------------QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 363 iwd~~~~~--------------------~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
||++.... .+..+ +|.++|..+.|+-.|..|.+ .+.||.|++|...
T Consensus 252 I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS--tGdDG~VRLWkan 318 (361)
T KOG2445|consen 252 IFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS--TGDDGCVRLWKAN 318 (361)
T ss_pred EEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee--cCCCceeeehhhh
Confidence 99987311 12222 47789999999999999988 6689999999863
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.7e-19 Score=169.89 Aligned_cols=248 Identities=15% Similarity=0.202 Sum_probs=194.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------CeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ--------CKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQH 276 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~--------~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iw 276 (475)
.|.+.|..++|.+....|++++.||+|.+|+++. .+++.+|.+|.++|.|++. +++.+++|+.||+|+.|
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w 371 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCW 371 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeee
Confidence 6778999999999999999999999999999832 3577889999999999998 68999999999999999
Q ss_pred ECCCCC---------ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec--cccceeEEEECCC
Q 011916 277 DLRVSS---------DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE--HTAAVKAIAWSPH 345 (475)
Q Consensus 277 d~~~~~---------~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~ 345 (475)
++.... .....+.+|...|..+++|.....|++++.||+++.|+.....+ .+|.. ..+.-..+.+-..
T Consensus 372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccc
Confidence 664221 23456889999999999999999999999999999999887666 33332 2233355555443
Q ss_pred CCcEEEEecCCCCCeEEEEECCCCceeeeecC--------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q 011916 346 QSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST 417 (475)
Q Consensus 346 ~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~ 417 (475)
......+.. .-+.--+++...+..+..+.. ...+..+.++|.+...+. +..++.|+++|..++..+..
T Consensus 451 ~~a~~~~s~--~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~--~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 451 RPAHSLASF--RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFT--AHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred hhHhhhhhc--ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEe--cccCCceecccccccccchh
Confidence 322222111 233333444444444444421 135778899999988888 77999999999999999999
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
...|...++++++.|+|-+|++++.|+.+++|++....+...
T Consensus 527 ~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~e 568 (577)
T KOG0642|consen 527 MVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLE 568 (577)
T ss_pred eeeccceecceeecCCCceEEeecCCceeehhhccchheeec
Confidence 999999999999999999999999999999999987665543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-18 Score=163.25 Aligned_cols=256 Identities=15% Similarity=0.264 Sum_probs=194.2
Q ss_pred eEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-------CCCEEEEEeCCCeEEEEECCCCee
Q 011916 172 NLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-------EGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 172 ~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-------dg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
+++.|+.+ .++.++.|..+.+|+-.+........+..+.--+.+-.-+ ....|++++.||.+.|.+ ..++.
T Consensus 18 c~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~-k~~rV 96 (737)
T KOG1524|consen 18 CCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN-KSARV 96 (737)
T ss_pred EeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec-ccchh
Confidence 58999876 7888888888888765554433333322222112221111 235799999999999987 66788
Q ss_pred eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 244 VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
.+.+..|.+.+.+-.|+ |.-|+++++||.|++|.-. +.....+......|.|++|.|+.+.++.+.. +.+.|=.+
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs--GMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~IKpL 173 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS--GMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHISIKPL 173 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc--chHHHHHhhcCceeEEEEECCCCCceEEecC-CeEEEeec
Confidence 88899999999999995 7899999999999999864 4444445556778999999998877666544 57888888
Q ss_pred CCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 322 HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 322 ~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
.....+...+.|.+-|.++.|++... ++++|| +|-..++||.........-.+..+|++++|.|+ +.+++ | +-
T Consensus 174 ~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgG--ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v--~-S~ 246 (737)
T KOG1524|consen 174 AANSKIIRWRAHDGLVLSLSWSTQSN-IIASGG--EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLL--W-SY 246 (737)
T ss_pred ccccceeEEeccCcEEEEeecCcccc-ceeecC--CceeEEeecccCcccccCChhccceeeeeeccc-cceee--e-ee
Confidence 87777888999999999999999887 788877 999999999876666666678899999999999 44443 3 22
Q ss_pred CeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEE
Q 011916 402 NQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 402 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
+.+++ -+...+.|..++||+||..++.|+..|.|.+=
T Consensus 247 nt~R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 247 NTARF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eeeee-----------cCCCccceEEEEEcCCCceeeccccCceEEEe
Confidence 33331 12356789999999999999999999987653
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=151.81 Aligned_cols=287 Identities=15% Similarity=0.199 Sum_probs=200.2
Q ss_pred CCCCceeccCCCCCCCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC
Q 011916 153 PKTPHKVLDAPSLQDDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG 231 (475)
Q Consensus 153 ~~~p~~~l~~p~~~~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg 231 (475)
|..|+-+|. .+.-.++++.|..+ .++++...|.|++|.+.+......+++.+...|+.+.-.|+ ..|.+-+.|+
T Consensus 3 pPdP~fvLR----p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 3 PPDPFFVLR----PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCeeEec----cccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 344566665 34455777888765 77888889999999999998888887667889999999887 5688888999
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCC-cEEEEECCC--------CCc--cEEE----ecCccCCEE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDR-NILQHDLRV--------SSD--YICK----LAGHKSEVC 296 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg-~I~iwd~~~--------~~~--~~~~----~~~h~~~V~ 296 (475)
.+.+|++..+..+.. |.-.+.++.|...-+...+... ....++-+. .+. .+.. -.+..+.+.
T Consensus 78 ~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvm 154 (323)
T KOG0322|consen 78 LLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVM 154 (323)
T ss_pred eEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCcee
Confidence 999999887554433 3334444444222222221111 111121111 001 1111 112345677
Q ss_pred EEEEcC-CCC--EEEEEeCCCcEEEEECCCCcee----------EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 297 GLKWSH-DDR--ELASGGNDNQLLVWNQHSQQPT----------LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 297 ~l~~s~-~~~--~lasg~~Dg~I~iwd~~~~~~~----------~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
+..|.. ++. +|+.|.++|.+.+||+.++..+ .....|..+|.++.+.+.-..= ++| ..+..+..
T Consensus 155 c~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rG-isg--ga~dkl~~ 231 (323)
T KOG0322|consen 155 CQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRG-ISG--GADDKLVM 231 (323)
T ss_pred eeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCC-cCC--Ccccccee
Confidence 777544 233 5677889999999999987433 3334588999999998643322 233 37888889
Q ss_pred EECCC--Cceee--eec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEE
Q 011916 364 WNTSN--GHQLN--SVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 364 wd~~~--~~~~~--~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 438 (475)
|++.. +.+.. .+. ..-.+..+.+-||++.+++ ++-|+.|+||..+++.+++.++.|.+.|.+++|+||...+|
T Consensus 232 ~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlAT--AGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 232 YSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILAT--AGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMA 309 (323)
T ss_pred eeeccccCcccccceEEecCCCccceEEccCCcEEee--cccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhh
Confidence 98764 33221 121 3345788999999999999 66899999999999999999999999999999999999999
Q ss_pred EEeCCCCEEEEecC
Q 011916 439 TGAGDETLRFWNVF 452 (475)
Q Consensus 439 s~s~Dg~I~iW~~~ 452 (475)
.++.|+.|.+|++.
T Consensus 310 aaskD~rISLWkLY 323 (323)
T KOG0322|consen 310 AASKDARISLWKLY 323 (323)
T ss_pred hccCCceEEeeecC
Confidence 99999999999974
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=148.73 Aligned_cols=265 Identities=18% Similarity=0.270 Sum_probs=197.3
Q ss_pred CCeEEEEECCCC--cEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCC-------CeEEEEECCCC---------eeeEEe
Q 011916 187 GTCVYLWTASNS--KVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNL-------GQVQVWDGTQC---------KRVRTF 247 (475)
Q Consensus 187 ~~~V~lw~~~~~--~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~d-------g~v~iwd~~~~---------~~~~~~ 247 (475)
++.|.+.+++.+ .+....-..+.+.|..++-+| +.+.|+++..+ -.+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 567777766544 333222236789999999999 55677776553 23679987542 233344
Q ss_pred c-CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEec-----CccCCEEEEEEcC--CCCEEEEEeCCCcEE
Q 011916 248 G-GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLA-----GHKSEVCGLKWSH--DDRELASGGNDNQLL 317 (475)
Q Consensus 248 ~-~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~s~--~~~~lasg~~Dg~I~ 317 (475)
. .+-+.|.|+.|. +..+++-. |..|.+|++....+.+..+. .|....++-+|+| +++.+++.+ |+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEE
Confidence 3 455689999994 56666665 88999999986555333322 3566788899999 788888765 68999
Q ss_pred EEECCCCceeEEEe-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeee-cCCCCeeEEEEcCCCCeEE
Q 011916 318 VWNQHSQQPTLRLT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQLNSV-DTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 318 iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~-~~~~~v~~l~~s~~~~~l~ 394 (475)
.||+++.+....+. .|...|..+.|+|+..++++++| .|+.|+|||++.- .++..+ .|...|.++.|+|....|+
T Consensus 197 ~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g--DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLi 274 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG--DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLI 274 (370)
T ss_pred EEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC--CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEE
Confidence 99999888776665 48888999999999999999998 9999999999864 455555 4678899999999888777
Q ss_pred EEEecCCCeEEEEECCCC-----------------------------ceEEEecCCCcceEEEEECC-CCCEEEEEeCCC
Q 011916 395 STHGYSQNQIMVWKYPSM-----------------------------AKVSTLTGHSLRVLYLATSP-DGQTIVTGAGDE 444 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~-----------------------------~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg 444 (475)
.+ |++|..|.+|-..+- ..+.++..|...|++++||. |--.+|+-+.||
T Consensus 275 Ls-~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDG 353 (370)
T KOG1007|consen 275 LS-GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDG 353 (370)
T ss_pred Ee-cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCc
Confidence 66 778999998865311 12446677999999999987 555678889999
Q ss_pred CEEEEecCCCCC
Q 011916 445 TLRFWNVFPSLK 456 (475)
Q Consensus 445 ~I~iW~~~~~~~ 456 (475)
.+.|=++....+
T Consensus 354 RviIs~V~r~~k 365 (370)
T KOG1007|consen 354 RVIISSVPRFLK 365 (370)
T ss_pred eEEeecCChhhh
Confidence 999877765443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-18 Score=154.14 Aligned_cols=204 Identities=21% Similarity=0.265 Sum_probs=154.0
Q ss_pred EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccE---EEecCccCCEEEEEEcCCCCEEE-EEeCCCcEEE
Q 011916 245 RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYI---CKLAGHKSEVCGLKWSHDDRELA-SGGNDNQLLV 318 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~---~~~~~h~~~V~~l~~s~~~~~la-sg~~Dg~I~i 318 (475)
..+++|...|++++| +|..|++++.|+.|++|+++.-.... ....-.-+..+.+.|.||-+-++ +.-..+++++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 357799999999999 68999999999999999997321110 01111123467899999877554 4455668999
Q ss_pred EECCCCc---eeE---------EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeeEEE
Q 011916 319 WNQHSQQ---PTL---------RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVCNLA 385 (475)
Q Consensus 319 wd~~~~~---~~~---------~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~ 385 (475)
|.+...+ ... .-..|...+..+-....+.+|+. ++ .|..|.+|+++ |+.+..+++. ..-...+
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~ims-as--~dt~i~lw~lk-Gq~L~~idtnq~~n~~aa 235 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMS-AS--LDTKICLWDLK-GQLLQSIDTNQSSNYDAA 235 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEE-ec--CCCcEEEEecC-Cceeeeecccccccccee
Confidence 9875321 111 11236677777888777775554 43 89999999998 9999998754 5677789
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECC--------CCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYP--------SMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~--------~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.+|+|++++++ .-.-.|++|..- .-..+..++||...|+.++|+++.+.++|.+.||+++|||++-.
T Consensus 236 vSP~GRFia~~--gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr 310 (420)
T KOG2096|consen 236 VSPDGRFIAVS--GFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR 310 (420)
T ss_pred eCCCCcEEEEe--cCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccce
Confidence 99999999984 445679999862 23457789999999999999999999999999999999998743
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-18 Score=150.53 Aligned_cols=231 Identities=19% Similarity=0.343 Sum_probs=178.1
Q ss_pred CCCCCCCceeEEecCCCC-----EEEEEcCCeEEEEECCC--CcEEEEeeC------CCCCcEEEEEEcC-CCCEEEEEe
Q 011916 163 PSLQDDFYLNLVDWSSQN-----VLAVGLGTCVYLWTASN--SKVTRLCDL------GPGDSVCSVQWTR-EGSYISVGT 228 (475)
Q Consensus 163 p~~~~d~~v~~l~ws~~~-----~la~~~~~~V~lw~~~~--~~~~~~~~~------~~~~~V~~v~~sp-dg~~la~g~ 228 (475)
+.+...+.++.+-|.|+. -+.++.+..++||.+.. .++.....+ .+..++++..|+. +-++|.+.+
T Consensus 91 a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 91 ANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 335566778889998863 24556677999999884 332221111 3567899999998 778999999
Q ss_pred CCCeEEEEECCCCe---eeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCc--cCCEEEEEE
Q 011916 229 NLGQVQVWDGTQCK---RVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGH--KSEVCGLKW 300 (475)
Q Consensus 229 ~dg~v~iwd~~~~~---~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~ 300 (475)
-|-+..|||++++. ....+-.|...|..++|. -+.+++.+.||.++++|+|.-.+....+..- ..+...++|
T Consensus 171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence 99999999999863 355677999999999994 3799999999999999999655544444332 457888999
Q ss_pred cC-CCCEEEEEeCC-CcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc------e
Q 011916 301 SH-DDRELASGGND-NQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH------Q 371 (475)
Q Consensus 301 s~-~~~~lasg~~D-g~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~------~ 371 (475)
++ |-+++|+-..| ..|.|.|++.. .++..+.+|.+.|++|+|.|+...-++++| .|....+||+...- +
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG--DD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG--DDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC--CcceEEEEecccccccCCCCc
Confidence 98 56788876554 57999999954 578899999999999999999998899887 89999999997532 2
Q ss_pred eeeecCCCCeeEEEEcCC-CCeEEE
Q 011916 372 LNSVDTGSQVCNLAWSKN-VNELVS 395 (475)
Q Consensus 372 ~~~~~~~~~v~~l~~s~~-~~~l~~ 395 (475)
+.....++.|..+.|++. ...+++
T Consensus 329 ilay~a~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 329 ILAYTAGGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred hhhhhccceeeeeeecccCCCEEEE
Confidence 333456788999999964 455555
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-16 Score=144.29 Aligned_cols=238 Identities=13% Similarity=0.239 Sum_probs=187.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCc--EEEEECCCCCccEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRN--ILQHDLRVSSDYIC 286 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~--I~iwd~~~~~~~~~ 286 (475)
...+..+.|+.+...|.+|+.|| .++|..+..............|..+-|+..+++..+.+.. +++++.+ ....+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~K-k~~~IC 82 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFK-KKTTIC 82 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcc-cCceEE
Confidence 34567777999999999999998 6788776554433333344567778888888888876544 8888887 333333
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec---cccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE---HTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~---h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
.+. ...+|.++.++.+ .|+++-.+ .|+|||+++.+.++++.. +...+.++++++.+.+++.-++ ...|.|.+
T Consensus 83 e~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s-~t~GdV~l 157 (391)
T KOG2110|consen 83 EIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS-TTSGDVVL 157 (391)
T ss_pred EEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC-CCCceEEE
Confidence 333 4567999998643 66666654 499999999999887754 4556777777777777777654 56799999
Q ss_pred EECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCe-EEEEECCCCceEEEecCCC--cceEEEEECCCCCEEEE
Q 011916 364 WNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQ-IMVWKYPSMAKVSTLTGHS--LRVLYLATSPDGQTIVT 439 (475)
Q Consensus 364 wd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~-I~iwd~~~~~~~~~l~~h~--~~V~~l~~spdg~~l~s 439 (475)
||+.+-+.+..+. |.+.+.+++|+++|..|++ +++.|+ |+||.+++++++.++.... ..|.+++|++|+++|++
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llAT--ASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLAT--ASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEECCCCCEEEE--eccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 9999999988885 7899999999999999999 666775 7999999999999997543 45899999999999999
Q ss_pred EeCCCCEEEEecCCCC
Q 011916 440 GAGDETLRFWNVFPSL 455 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~~ 455 (475)
.+..++|.+|++....
T Consensus 236 sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 236 SSNTETVHIFKLEKVS 251 (391)
T ss_pred ecCCCeEEEEEecccc
Confidence 9999999999998766
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-17 Score=148.70 Aligned_cols=195 Identities=23% Similarity=0.320 Sum_probs=161.5
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCcE-EEEee----CCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKV-TRLCD----LGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~-~~~~~----~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~~ 241 (475)
.++|+.|.|+ .-+++-.++.|.+|+++.+.. ..... .++....++-+|+| +|+.+++.+ |++++.||+.+.
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTM 203 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccch
Confidence 6899999997 455555699999999988765 22221 14456788999999 788777755 589999999998
Q ss_pred eeeEEec-CCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcE
Q 011916 242 KRVRTFG-GHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQL 316 (475)
Q Consensus 242 ~~~~~~~-~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I 316 (475)
++...+. .|...|..+.||+ .+|++|+.||.|++||.|.....++.+.+|...|.++.|+| ..+++++|+.|..|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V 283 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAV 283 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCcee
Confidence 8777665 7889999999986 68999999999999999998999999999999999999999 56688999999999
Q ss_pred EEEECCCC-----------------------------ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011916 317 LVWNQHSQ-----------------------------QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 317 ~iwd~~~~-----------------------------~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~ 367 (475)
.+|-...- ..+.++..|...|.+++|+.-..+++++-+ .||.+.|=.+.
T Consensus 284 ~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLS--YDGRviIs~V~ 361 (370)
T KOG1007|consen 284 NLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLS--YDGRVIISSVP 361 (370)
T ss_pred EEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEec--cCceEEeecCC
Confidence 99975321 123467789999999999999999999976 99999886654
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.6e-17 Score=147.05 Aligned_cols=242 Identities=14% Similarity=0.282 Sum_probs=179.6
Q ss_pred CCCCcEEEEEEcC----C-CCEEEEEeCCCeEEEEECCCCe---eeEEec--CCCCceEEEEe----C--CCEEEEEeCC
Q 011916 207 GPGDSVCSVQWTR----E-GSYISVGTNLGQVQVWDGTQCK---RVRTFG--GHQTRAGVLAW----N--SRILSSGSRD 270 (475)
Q Consensus 207 ~~~~~V~~v~~sp----d-g~~la~g~~dg~v~iwd~~~~~---~~~~~~--~h~~~v~~l~~----~--~~~l~sgs~d 270 (475)
+|+.+|..++|++ + -..+|+.+. ..+.+|...... .++.+. .|......++| + ..++++|+.-
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 7788999999985 2 245555555 578999876443 333332 46777888888 1 3588999999
Q ss_pred CcEEEEECCCCCccEEEecCccCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEe---ccccceeEEEECCCC
Q 011916 271 RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRLT---EHTAAVKAIAWSPHQ 346 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd~~~~~~~~~~~---~h~~~v~~l~~sp~~ 346 (475)
|.|+|.|+. ..+....+.+|...|..|.++|+ .+++++++.|..|++|++++..++..|. +|.+.|.++.|+++|
T Consensus 115 GvIrVid~~-~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g 193 (385)
T KOG1034|consen 115 GVIRVIDVV-SGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG 193 (385)
T ss_pred eEEEEEecc-hhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC
Confidence 999999998 67888899999999999999995 4799999999999999999999998875 499999999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceeeeec-----------------------------CCCCeeEEEEcCCCCeEEEEE
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVD-----------------------------TGSQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-----------------------------~~~~v~~l~~s~~~~~l~~~~ 397 (475)
.+++.+| .|..|++|++...+....++ |...|-|+.|- |+++++
T Consensus 194 d~i~ScG---mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilS-- 266 (385)
T KOG1034|consen 194 DRIASCG---MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILS-- 266 (385)
T ss_pred CeeeccC---CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheee--
Confidence 9655544 89999999998433221111 22233344443 456666
Q ss_pred ecCCCeEEEEECCCC--------------ceEEEecCCCcceEEEEE--CCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 398 GYSQNQIMVWKYPSM--------------AKVSTLTGHSLRVLYLAT--SPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 398 g~~dg~I~iwd~~~~--------------~~~~~l~~h~~~V~~l~~--spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
-+-+|.|..|..... ..+.++.-....|+.+.| .+-++.||.|...|.|.+||+...+..
T Consensus 267 kscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 267 KSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred cccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 455789999987211 123344444556666655 556889999999999999999987764
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-16 Score=163.38 Aligned_cols=277 Identities=16% Similarity=0.221 Sum_probs=198.8
Q ss_pred EecCC-CCEEEEEc-CCeEEEEECCCCcEEEEeeCC--CCCcEEEEEEcC--CCCEEEEEeCCCeEEEEEC-----CCCe
Q 011916 174 VDWSS-QNVLAVGL-GTCVYLWTASNSKVTRLCDLG--PGDSVCSVQWTR--EGSYISVGTNLGQVQVWDG-----TQCK 242 (475)
Q Consensus 174 l~ws~-~~~la~~~-~~~V~lw~~~~~~~~~~~~~~--~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~-----~~~~ 242 (475)
+.+++ ...++++. ...|.+||.+.++...-++.+ ....|+.+.+.. |..++++|+.||.|+||+- .+.+
T Consensus 1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e 1149 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE 1149 (1387)
T ss_pred eeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCce
Confidence 44444 23445544 678999999999987777653 356899999876 5578999999999999973 2234
Q ss_pred eeEEecC-------CCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeC
Q 011916 243 RVRTFGG-------HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGN 312 (475)
Q Consensus 243 ~~~~~~~-------h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~ 312 (475)
.+..+.+ ..+.-.-+.|. ..+|++++.-..|+|||......+.-...+....|+++.-+- .|+.++.|..
T Consensus 1150 LVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa 1229 (1387)
T KOG1517|consen 1150 LVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFA 1229 (1387)
T ss_pred eEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeec
Confidence 4443321 11222445673 345555555899999999844433333444556677776544 5789999999
Q ss_pred CCcEEEEECCCCc---eeEEEeccccc--eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee--e----cCCCCe
Q 011916 313 DNQLLVWNQHSQQ---PTLRLTEHTAA--VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS--V----DTGSQV 381 (475)
Q Consensus 313 Dg~I~iwd~~~~~---~~~~~~~h~~~--v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~--~----~~~~~v 381 (475)
||.|++||.+... .+...+.|... |..+.+.+.|-.-+++|+ .+|.|++||++....... + +.++..
T Consensus 1230 DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~l 1307 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEYGSAL 1307 (1387)
T ss_pred CCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccccCccc
Confidence 9999999998543 46677788887 999999987766566654 999999999998422221 1 235569
Q ss_pred eEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC-------CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG-------HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-------h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
+++..+++...+++ |+. +.|.||++. ++.+..++. ..+.+.|++|+|-.-.||+|+.|.+|.||....+
T Consensus 1308 Tal~VH~hapiiAs--Gs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1308 TALTVHEHAPIIAS--GSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeeeeccCCCeeee--cCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 99999999999998 766 999999985 333433332 2355799999999999999999999999998765
Q ss_pred CC
Q 011916 455 LK 456 (475)
Q Consensus 455 ~~ 456 (475)
..
T Consensus 1384 ~~ 1385 (1387)
T KOG1517|consen 1384 RL 1385 (1387)
T ss_pred CC
Confidence 43
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.7e-17 Score=159.42 Aligned_cols=222 Identities=19% Similarity=0.346 Sum_probs=169.1
Q ss_pred EcCCeEEEEECCCC-c-----EEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-------eeeEEecCC
Q 011916 185 GLGTCVYLWTASNS-K-----VTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQC-------KRVRTFGGH 250 (475)
Q Consensus 185 ~~~~~V~lw~~~~~-~-----~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~-------~~~~~~~~h 250 (475)
|.+|.|-||++... + +..+ -.+..|+.+.|.| |...||+++.||.|++|.+..+ .....+..|
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l---~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h 676 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGL---FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH 676 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccccccc---ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc
Confidence 44789999998753 2 2222 2467899999999 8889999999999999998653 345677899
Q ss_pred CCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-
Q 011916 251 QTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP- 326 (475)
Q Consensus 251 ~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~- 326 (475)
...|+++.|++ +.|++++.|-+|.+||++ .......+.+|.+.|.+++|||+|+.+|+.+.||+|++|+.+.++.
T Consensus 677 ~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~-~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~p 755 (1012)
T KOG1445|consen 677 GEKITSLRFHPLAADVLAVASYDSTIELWDLA-NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQP 755 (1012)
T ss_pred cceEEEEEecchhhhHhhhhhccceeeeeehh-hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCc
Confidence 99999999986 899999999999999999 5667778999999999999999999999999999999999987643
Q ss_pred eEEEec-cccceeEEEECCCCCcEEEEecC-CCCCeEEEEECCCC--ceeeee--cCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 327 TLRLTE-HTAAVKAIAWSPHQSSLLASGGG-TADRCIRFWNTSNG--HQLNSV--DTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 327 ~~~~~~-h~~~v~~l~~sp~~~~ll~sg~G-s~d~~I~iwd~~~~--~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
++.-.+ -...--.|.|.-+|++++++|-. ...+.|.+||..+- ..+... +..-++.--.+.+|.+.|+.+ |-.
T Consensus 756 v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lflt-GKG 834 (1012)
T KOG1445|consen 756 VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLT-GKG 834 (1012)
T ss_pred cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEe-cCC
Confidence 332221 11233568899999988888631 12467889987653 333332 333334444566777777665 888
Q ss_pred CCeEEEEECCC
Q 011916 401 QNQIMVWKYPS 411 (475)
Q Consensus 401 dg~I~iwd~~~ 411 (475)
|..|.+|.+-.
T Consensus 835 D~~v~~yEv~~ 845 (1012)
T KOG1445|consen 835 DRFVNMYEVIY 845 (1012)
T ss_pred CceEEEEEecC
Confidence 99999998743
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-16 Score=161.36 Aligned_cols=231 Identities=16% Similarity=0.111 Sum_probs=164.3
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCee--eEEecCCCCceEEEEe--C
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---GQVQVWDGTQCKR--VRTFGGHQTRAGVLAW--N 260 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g~v~iwd~~~~~~--~~~~~~h~~~v~~l~~--~ 260 (475)
..|++||........+. .+...+.+++|+|||+.|+.++.+ ..|++||+.+++. +..+.+|. ..++| +
T Consensus 184 ~~i~i~d~dg~~~~~lt--~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPD 258 (429)
T PRK01742 184 YEVRVADYDGFNQFIVN--RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPD 258 (429)
T ss_pred EEEEEECCCCCCceEec--cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCC
Confidence 58999999877644333 567789999999999999987654 3699999988754 33344443 35677 5
Q ss_pred CCEEEEE-eCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCC-ceeEEEeccccce
Q 011916 261 SRILSSG-SRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG-NDNQLLVWNQHSQ-QPTLRLTEHTAAV 337 (475)
Q Consensus 261 ~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-~Dg~I~iwd~~~~-~~~~~~~~h~~~v 337 (475)
++.|+.+ +.+|.+.||.+.........+..+...+....|+|||+.|+.++ .++...||++... .....+ .+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~-- 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG-- 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--
Confidence 6777765 46887766654433444566777777888999999999877655 5677888876532 222222 3333
Q ss_pred eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCceE
Q 011916 338 KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY--PSMAKV 415 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~--~~~~~~ 415 (475)
..+.|+|+|+.+++++ .+ .+.+||+.+++....... .....+.|+|+|+.|+. +..++.+.+|++ .++..+
T Consensus 336 ~~~~~SpDG~~ia~~~---~~-~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~--~s~~g~~~~l~~~~~~G~~~ 408 (429)
T PRK01742 336 YSAQISADGKTLVMIN---GD-NVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIY--SSTQGLGKVLQLVSADGRFK 408 (429)
T ss_pred CCccCCCCCCEEEEEc---CC-CEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEE--EEcCCCceEEEEEECCCCce
Confidence 4678999999877764 24 466699998876543322 23466889999999998 556777777765 457788
Q ss_pred EEecCCCcceEEEEECCC
Q 011916 416 STLTGHSLRVLYLATSPD 433 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~spd 433 (475)
..+..|.+.+...+|+|-
T Consensus 409 ~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 409 ARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred EEccCCCCCCCCcccCCC
Confidence 888889988999999984
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-16 Score=159.74 Aligned_cols=249 Identities=18% Similarity=0.301 Sum_probs=184.7
Q ss_pred CCCCceeccCCCCCCCCceeEEecCCC--CEEEEEc-CCeEEEEECCCCcEE-----EEeeCCCCCcEEEEEEcCCCC--
Q 011916 153 PKTPHKVLDAPSLQDDFYLNLVDWSSQ--NVLAVGL-GTCVYLWTASNSKVT-----RLCDLGPGDSVCSVQWTREGS-- 222 (475)
Q Consensus 153 ~~~p~~~l~~p~~~~d~~v~~l~ws~~--~~la~~~-~~~V~lw~~~~~~~~-----~~~~~~~~~~V~~v~~spdg~-- 222 (475)
|..|+.+++.+ ..+.++.+++. +++++|. +|.|.+||+..+... ......|.++++.+.|..+..
T Consensus 232 p~~Pe~~~~~~-----s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~ 306 (555)
T KOG1587|consen 232 PNTPELVLESP-----SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNT 306 (555)
T ss_pred CCCceEEEecC-----CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCC
Confidence 45677777755 34677777763 5666655 899999999877652 222237889999999987544
Q ss_pred EEEEEeCCCeEEEEECCCCee-eE-----Eec------CCCCceEEEEe---CCCEEEEEeCCCcEEEEECC---CCC--
Q 011916 223 YISVGTNLGQVQVWDGTQCKR-VR-----TFG------GHQTRAGVLAW---NSRILSSGSRDRNILQHDLR---VSS-- 282 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~-~~-----~~~------~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~---~~~-- 282 (475)
-+++++.||.|..|+++.-.. .. ... .....+++++| ++..++.|+.+|.|..-+-. ...
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~ 386 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEV 386 (555)
T ss_pred ceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccc
Confidence 499999999999998764322 11 111 12346788888 57899999999999874332 122
Q ss_pred --ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 283 --DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH-SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 283 --~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
+....+..|.+.|.++.++|=+..++..+.|-+|+||... ...++..+..+...|.+++|||....+++++. .||
T Consensus 387 ~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d--~~G 464 (555)
T KOG1587|consen 387 SYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVD--GDG 464 (555)
T ss_pred cccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEc--CCC
Confidence 2234566788999999999955544444448999999998 77788888888888999999999999999975 899
Q ss_pred eEEEEECCCC--ceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 360 CIRFWNTSNG--HQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 360 ~I~iwd~~~~--~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
.|.+||+... .++.+.. .....+.+.|++.|+.|++ |...|.+.+|++.
T Consensus 465 ~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lav--Gd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 465 NLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAV--GDANGTTHILKLS 516 (555)
T ss_pred ceehhhhhccccCCcccccccccccceeecCCCCcEEEE--ecCCCcEEEEEcC
Confidence 9999998653 3333332 2445677888888999999 9999999999985
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.1e-17 Score=158.95 Aligned_cols=247 Identities=13% Similarity=0.290 Sum_probs=184.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
..|..++|-|||..|+.+..+ .+.|||...|..+.++++|...|.+++| +|..+++|+.|+.|.+|.-...+. .
T Consensus 13 hci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~---L 88 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI---L 88 (1081)
T ss_pred cchheeEECCCCceEEEecCC-EEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce---e
Confidence 478999999999988887764 7999999999999999999999999999 689999999999999998763332 2
Q ss_pred ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011916 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~ 367 (475)
-..|...|.|+.|+|-.+.|++++- +..-+|........ .. .....+.+.+|..||.+++. |-.+|+|.+-+-
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~-K~-kss~R~~~CsWtnDGqylal---G~~nGTIsiRNk- 161 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVS-KH-KSSSRIICCSWTNDGQYLAL---GMFNGTISIRNK- 161 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHH-hh-hhheeEEEeeecCCCcEEEE---eccCceEEeecC-
Confidence 3469999999999999999999886 45778876643322 11 23567889999999996665 448999999874
Q ss_pred CCceeeeec----CCCCeeEEEEcCCCC-----eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEE
Q 011916 368 NGHQLNSVD----TGSQVCNLAWSKNVN-----ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 368 ~~~~~~~~~----~~~~v~~l~~s~~~~-----~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 438 (475)
+|+....++ ..++|.+++|+|... .+++ ..-..++.+|.+. |+.+..-+.-.-...|+.+.++|++++
T Consensus 162 ~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV--~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~L 238 (1081)
T KOG1538|consen 162 NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV--ADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYIL 238 (1081)
T ss_pred CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE--EeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEE
Confidence 455444443 356899999999643 2333 3445566666653 444443333444567899999999999
Q ss_pred EEeCCCCEEEEecCCCCCCCCcccCCcccccc
Q 011916 439 TGAGDETLRFWNVFPSLKAPALVKDTSLWSLG 470 (475)
Q Consensus 439 s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~s~~ 470 (475)
.|+.|+.+.+|--+.-..-..-..++.+|++.
T Consensus 239 iGGsdk~L~~fTR~GvrLGTvg~~D~WIWtV~ 270 (1081)
T KOG1538|consen 239 LGGSDKQLSLFTRDGVRLGTVGEQDSWIWTVQ 270 (1081)
T ss_pred EccCCCceEEEeecCeEEeeccccceeEEEEE
Confidence 99999999998755433333333566777764
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-14 Score=134.83 Aligned_cols=273 Identities=16% Similarity=0.252 Sum_probs=199.9
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEEe
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL--GQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d--g~v~iwd~~~~~~~~~~ 247 (475)
++.+.|..+ .++++|......+++.+.-....... ..+..|..+-|+ ..++|..+.+ ..+++++.+....+..+
T Consensus 8 i~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~-~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~ 84 (391)
T KOG2110|consen 8 INFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKD-TEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEI 84 (391)
T ss_pred eeeeeeccceeEEEccCCCceeEEecCchHHhhccc-CCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEE
Confidence 455668887 68888988888888877654311111 223455566665 3466665554 34899998887777666
Q ss_pred cCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEec---CccCCEEEEEEcCCCCEEEEEe--CCCcEEEEECC
Q 011916 248 GGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLA---GHKSEVCGLKWSHDDRELASGG--NDNQLLVWNQH 322 (475)
Q Consensus 248 ~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~~~~~lasg~--~Dg~I~iwd~~ 322 (475)
. ....|.++..|.+.|+++-.+. |.|||++ .-+.+.++. .+...++++..+..+.+||.-+ ..|.|.+||..
T Consensus 85 ~-fpt~IL~VrmNr~RLvV~Lee~-IyIydI~-~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 85 F-FPTSILAVRMNRKRLVVCLEES-IYIYDIK-DMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred e-cCCceEEEEEccceEEEEEccc-EEEEecc-cceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence 4 4568999999988888887766 9999998 445444433 4566788888888888998743 45899999999
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCe-EEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEEEEe
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC-IRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~-I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~g 398 (475)
+-+++..+..|.+.+-+++|+++|. ++|+++ +.|+ ||++.+.+|+.+.++..+ ..|.+++|++++++|.+ .
T Consensus 162 nl~~v~~I~aH~~~lAalafs~~G~-llATAS--eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~--s 236 (391)
T KOG2110|consen 162 NLQPVNTINAHKGPLAALAFSPDGT-LLATAS--EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA--S 236 (391)
T ss_pred cceeeeEEEecCCceeEEEECCCCC-EEEEec--cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE--e
Confidence 9999999999999999999999999 666654 5555 899999999999999655 56899999999999998 6
Q ss_pred cCCCeEEEEECCCCc-------------------------------------eEEEecCCCcce-EEEEEC--CCCCEEE
Q 011916 399 YSQNQIMVWKYPSMA-------------------------------------KVSTLTGHSLRV-LYLATS--PDGQTIV 438 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~-------------------------------------~~~~l~~h~~~V-~~l~~s--pdg~~l~ 438 (475)
++.++|+||++.... ...+.+...... ..+.+. +...++.
T Consensus 237 S~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~ 316 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVL 316 (391)
T ss_pred cCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEE
Confidence 688999999875211 001111111111 222333 4678899
Q ss_pred EEeCCCCEEEEecCCC
Q 011916 439 TGAGDETLRFWNVFPS 454 (475)
Q Consensus 439 s~s~Dg~I~iW~~~~~ 454 (475)
.++.||.++.|.+...
T Consensus 317 vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 317 VASYDGHLYSYRLPPK 332 (391)
T ss_pred EEEcCCeEEEEEcCCC
Confidence 9999999999999864
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.9e-16 Score=143.98 Aligned_cols=281 Identities=14% Similarity=0.227 Sum_probs=208.8
Q ss_pred CCCceeEEecCCC-CEEEE-EcCCeEEEEECCC------CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 167 DDFYLNLVDWSSQ-NVLAV-GLGTCVYLWTASN------SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~-~~~~~V~lw~~~~------~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
+-..||++.|+.+ .+|+. |.|..+.||+++. .+.+.+....|...|.|++|.-..+.|++|..+|+|.+.|+
T Consensus 55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi 134 (609)
T KOG4227|consen 55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI 134 (609)
T ss_pred hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence 3457999999976 44444 5578999999864 35555555467789999999999999999999999999999
Q ss_pred CCCeeeEEecC--CCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccE--EEecCccCCEEEEEEcC-CCCEEEEEe
Q 011916 239 TQCKRVRTFGG--HQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYI--CKLAGHKSEVCGLKWSH-DDRELASGG 311 (475)
Q Consensus 239 ~~~~~~~~~~~--h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l~~s~-~~~~lasg~ 311 (475)
++.+.+..+.. ..+.|..+..++ +.|++.+.+|.|.+||++.....+ ..+.........+.|+| ...+|++.+
T Consensus 135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~ 214 (609)
T KOG4227|consen 135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNS 214 (609)
T ss_pred ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEecc
Confidence 99988877652 345888888764 899999999999999998654322 22333455678899999 456888899
Q ss_pred CCCcEEEEECCCCc-eeEEEec------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeeecCCC----
Q 011916 312 NDNQLLVWNQHSQQ-PTLRLTE------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LNSVDTGS---- 379 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~-~~~~~~~------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~~~~~~~---- 379 (475)
..+-+-+||.+... ++..... ....-.++.|+|.|..+++.- ....-.+||+....+ +...++..
T Consensus 215 ~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR---R~~~P~~~D~~S~R~~V~k~D~N~~GY~ 291 (609)
T KOG4227|consen 215 ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR---RGKCPLYFDFISQRCFVLKSDHNPNGYC 291 (609)
T ss_pred ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh---ccCCCEEeeeecccceeEeccCCCCcce
Confidence 99999999998653 2222211 122346789999999888863 345566788776443 34444322
Q ss_pred ---CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-----------------------ceEEEecCCCcceEEEEECCC
Q 011916 380 ---QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-----------------------AKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 380 ---~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-----------------------~~~~~l~~h~~~V~~l~~spd 433 (475)
.+.+++|..+.. +++ |+.+-.|++|.++.. ..+..+++|..-++.+.|+|.
T Consensus 292 N~~T~KS~~F~~D~~-v~t--GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H 368 (609)
T KOG4227|consen 292 NIKTIKSMTFIDDYT-VAT--GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQH 368 (609)
T ss_pred eeeeeeeeeeeccee-eec--cCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCC
Confidence 355667766544 555 888999999998621 234567899999999999999
Q ss_pred CCEEEEEeCCCCEEEEecCC
Q 011916 434 GQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~ 453 (475)
..+|++.+....++||.-..
T Consensus 369 ~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 369 NNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred cceEeccchhhheecccccc
Confidence 99999999999999997543
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-16 Score=143.68 Aligned_cols=227 Identities=16% Similarity=0.288 Sum_probs=172.1
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe----CCCEEEEEeCCCcEEEEECCCCCccE-EEecCcc-CCE
Q 011916 222 SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW----NSRILSSGSRDRNILQHDLRVSSDYI-CKLAGHK-SEV 295 (475)
Q Consensus 222 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~----~~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~h~-~~V 295 (475)
..+|++..+|.|++||..+++.+..++++...+..+.| .++.+.+|+.||+|++||+|...+.. .....+. .+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 57999999999999999999999999999999998888 25899999999999999999655433 3344454 467
Q ss_pred EEEEEcCCCCEEEEEeC----CCcEEEEECCCCce-eEEE-eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 296 CGLKWSHDDRELASGGN----DNQLLVWNQHSQQP-TLRL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~----Dg~I~iwd~~~~~~-~~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.+++.+..++.+++|.. |-.|.+||++..+. +..+ ..|...|+++.|+|....++++|+ .||.|.+||+...
T Consensus 121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS--vDGLvnlfD~~~d 198 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS--VDGLVNLFDTKKD 198 (376)
T ss_pred eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec--ccceEEeeecCCC
Confidence 77887778889988863 56899999998765 4444 359999999999999999999976 9999999999754
Q ss_pred c----eeeeecCCCCeeEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEecCCC------------cceEEEEECC
Q 011916 370 H----QLNSVDTGSQVCNLAWSKNV-NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS------------LRVLYLATSP 432 (475)
Q Consensus 370 ~----~~~~~~~~~~v~~l~~s~~~-~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~------------~~V~~l~~sp 432 (475)
. ++..+.+++.|..+.|..++ +.|.+ -+..+...+|+++.+.....+.... ..+.......
T Consensus 199 ~EeDaL~~viN~~sSI~~igw~~~~ykrI~c--lTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 199 NEEDALLHVINHGSSIHLIGWLSKKYKRIMC--LTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred cchhhHHHhhcccceeeeeeeecCCcceEEE--EEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 3 45667788999999999887 33544 3457889999998877554443211 1122222223
Q ss_pred CCCEEEEEeC-CCCEEEEecC
Q 011916 433 DGQTIVTGAG-DETLRFWNVF 452 (475)
Q Consensus 433 dg~~l~s~s~-Dg~I~iW~~~ 452 (475)
++..++.++. -++..++-+.
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~ 297 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLV 297 (376)
T ss_pred CcceEEEeccccCceeEEEee
Confidence 5556666655 5666666655
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-16 Score=146.49 Aligned_cols=240 Identities=22% Similarity=0.363 Sum_probs=174.2
Q ss_pred eeEEecCCC---CEEEEEcCCeEEEEECCCC-------cEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 171 LNLVDWSSQ---NVLAVGLGTCVYLWTASNS-------KVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~---~~la~~~~~~V~lw~~~~~-------~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+..+++.++ .+.++|.|..|+||.+..+ ++..+-.+ .|...|+++.|+|+|+.||+|+.+|.|.+|...
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 444555543 4667777999999987643 22222223 688999999999999999999999999999765
Q ss_pred --------C--------CeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEc
Q 011916 240 --------Q--------CKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS 301 (475)
Q Consensus 240 --------~--------~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 301 (475)
+ ....+.+.+|...|..++| ++.++++++-|..+++||+. .+.....+..|...|..++|.
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~-~G~l~~~~~dh~~yvqgvawD 174 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH-AGQLLAILDDHEHYVQGVAWD 174 (434)
T ss_pred CcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec-cceeEeeccccccccceeecc
Confidence 2 2344567789999999999 57899999999999999999 788889999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEe-------------------ccc----cceeEEEECCCCCcEEEEecCC--
Q 011916 302 HDDRELASGGNDNQLLVWNQHSQQPTLRLT-------------------EHT----AAVKAIAWSPHQSSLLASGGGT-- 356 (475)
Q Consensus 302 ~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-------------------~h~----~~v~~l~~sp~~~~ll~sg~Gs-- 356 (475)
|-++++++-+.|...+++.+.....++... -|. .-...++|+|+|..|+. ..|.
T Consensus 175 pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt-Pag~~~ 253 (434)
T KOG1009|consen 175 PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT-PAGLFK 253 (434)
T ss_pred hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc-ccceee
Confidence 999999998888877766654322211110 011 12345566777663332 2110
Q ss_pred -----------------------------------------------------------------CCCeEEEEECCCCce
Q 011916 357 -----------------------------------------------------------------ADRCIRFWNTSNGHQ 371 (475)
Q Consensus 357 -----------------------------------------------------------------~d~~I~iwd~~~~~~ 371 (475)
..+.+++||.++-.+
T Consensus 254 ~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P 333 (434)
T KOG1009|consen 254 VGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEP 333 (434)
T ss_pred eCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccc
Confidence 234556666666555
Q ss_pred eeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q 011916 372 LNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK 414 (475)
Q Consensus 372 ~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~ 414 (475)
+.... |-..++.++|+++|..|++ .+.||...+.-++..+.
T Consensus 334 ~~~v~nihy~~iTDiaws~dg~~l~v--SS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 334 LAVVDNIHYSAITDIAWSDDGSVLLV--SSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eEEEeeeeeeeecceeecCCCcEEEE--eccCCceEEEEEcchhc
Confidence 55442 4567999999999999999 77899888777766554
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-17 Score=164.91 Aligned_cols=283 Identities=15% Similarity=0.222 Sum_probs=218.6
Q ss_pred CCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 165 LQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+....|+..++=+..++++++.|..|+||..+++.....+. +|.+.|+.++.+.+..++|+++.|..|++|.+.++.++
T Consensus 189 H~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv 267 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV 267 (1113)
T ss_pred hhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence 34456666666667789999999999999999999888886 99999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCC-ccE-EEe-cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 245 RTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS-DYI-CKL-AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~-~~~-~~~-~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
..+.+|++.|++++|.+.. +.+.||++++||.+... ..+ .-+ ......+.++.|...+.-+++|+.|+.-..|.+
T Consensus 268 svLrghtgavtaiafsP~~--sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~ 345 (1113)
T KOG0644|consen 268 SVLRGHTGAVTAIAFSPRA--SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEF 345 (1113)
T ss_pred HHHhccccceeeeccCccc--cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchh
Confidence 9999999999999998865 78899999999998211 100 001 112356788888888999999999999888876
Q ss_pred CCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 322 HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 322 ~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
.... .+...+.-+..+.+-..+..+.- .+-.+.+|++.+|..++.. .+...+..+.++|-...++.. ..-
T Consensus 346 ~~l~------~~~~~lif~t~ssd~~~~~~~ar--~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ms-ag~ 416 (1113)
T KOG0644|consen 346 EQLA------WRSNLLIFVTRSSDLSSIVVTAR--NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMS-AGY 416 (1113)
T ss_pred hHhh------hhccceEEEeccccccccceeee--eeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhh-ccC
Confidence 5321 12222222222223333444432 6888999999999888776 466789999999988887766 447
Q ss_pred CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 401 QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 401 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
||.+.|||+-.+.++.........+..-+||+||+.++....-|.++|.....+.....
T Consensus 417 dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s~k~ 475 (1113)
T KOG0644|consen 417 DGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKSQKK 475 (1113)
T ss_pred CCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCccccc
Confidence 99999999988877665543345667779999999999888889999998876655443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=141.52 Aligned_cols=243 Identities=14% Similarity=0.229 Sum_probs=182.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC------CeeeEEec-CCCCceEEEEeC--CCEEEEEeCCCcEEEEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ------CKRVRTFG-GHQTRAGVLAWN--SRILSSGSRDRNILQHD 277 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~------~~~~~~~~-~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd 277 (475)
+|.+.|.++.|+.++++||+|+.|..+++|+++. .+++..+. .|...|.|++|+ ...+++|+.+++|...|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 7899999999999999999999999999999753 35566555 355899999996 47999999999999999
Q ss_pred CCCCCccEEEec--CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-e--eEEEeccccceeEEEECCCCCcEEEE
Q 011916 278 LRVSSDYICKLA--GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ-P--TLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 278 ~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~-~--~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
+.+. +.+..+. ...+.|..+..+|-.+.|++.+.++.|.+||.+... + +............+.|+|....|+++
T Consensus 134 iEt~-qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~ 212 (609)
T KOG4227|consen 134 IETK-QSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILV 212 (609)
T ss_pred cccc-eeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEe
Confidence 9843 3333322 234589999999999999999999999999998654 2 22333455677889999999999998
Q ss_pred ecCCCCCeEEEEECCCCce-eeee----cC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce-EEEecCCC-
Q 011916 353 GGGTADRCIRFWNTSNGHQ-LNSV----DT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK-VSTLTGHS- 422 (475)
Q Consensus 353 g~Gs~d~~I~iwd~~~~~~-~~~~----~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-~~~l~~h~- 422 (475)
.. ..+-+-+||.+..+. +... .. ...-....|+|.|+.+++. -....-.+||+.+..+ +..+ .|.
T Consensus 213 ~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi--RR~~~P~~~D~~S~R~~V~k~-D~N~ 287 (609)
T KOG4227|consen 213 NS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI--RRGKCPLYFDFISQRCFVLKS-DHNP 287 (609)
T ss_pred cc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh--hccCCCEEeeeecccceeEec-cCCC
Confidence 76 788899999876532 1111 11 1234678899999999873 3344556788876443 2332 232
Q ss_pred ------cceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 423 ------LRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 423 ------~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
..+.+++|.-|. .+++|+.+=.|++|.+.....
T Consensus 288 ~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~d 326 (609)
T KOG4227|consen 288 NGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRAND 326 (609)
T ss_pred Ccceeeeeeeeeeeecce-eeeccCcccceEEEecCCCcc
Confidence 246677887665 489999999999999975443
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=151.85 Aligned_cols=205 Identities=19% Similarity=0.324 Sum_probs=160.9
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEE
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLA 258 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~ 258 (475)
+.++.++.||.+.|.+- .+++....+ .|.+.|.+-.|+|||.-|++++.||.|++|. .+|-+..++......|.|++
T Consensus 76 d~~~i~s~DGkf~il~k-~~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~ 152 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNK-SARVERSIS-AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCAR 152 (737)
T ss_pred ceEEEEcCCceEEEecc-cchhhhhhh-hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEE
Confidence 34777788999888874 455555554 7889999999999999999999999999998 55555555666778999999
Q ss_pred eCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecccc
Q 011916 259 WNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTA 335 (475)
Q Consensus 259 ~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~ 335 (475)
|.+ +.+++.+ +.+.|=.+. ....+...++|.+-|.++.|++..+++++||+|-..+|||.. |..++.-..|..
T Consensus 153 W~p~S~~vl~c~g--~h~~IKpL~-~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 153 WAPNSNSIVFCQG--GHISIKPLA-ANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY 228 (737)
T ss_pred ECCCCCceEEecC--CeEEEeecc-cccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc
Confidence 953 4555444 566666666 455667789999999999999999999999999999999965 566777788999
Q ss_pred ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
+|++++|.|+ + +++.++ -+++++= -...+.|.+++|++||..+++ |+..|.+.+-
T Consensus 229 ~ITSva~npd-~-~~~v~S---~nt~R~~----------~p~~GSifnlsWS~DGTQ~a~--gt~~G~v~~A 283 (737)
T KOG1524|consen 229 AITSVAFNPE-K-DYLLWS---YNTARFS----------SPRVGSIFNLSWSADGTQATC--GTSTGQLIVA 283 (737)
T ss_pred ceeeeeeccc-c-ceeeee---eeeeeec----------CCCccceEEEEEcCCCceeec--cccCceEEEe
Confidence 9999999999 3 555543 4444421 123467999999999999998 7788877653
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-14 Score=124.58 Aligned_cols=262 Identities=13% Similarity=0.177 Sum_probs=183.9
Q ss_pred EecCCC--CEEEEEcCCeEEEEECCC---------CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 174 VDWSSQ--NVLAVGLGTCVYLWTASN---------SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 174 l~ws~~--~~la~~~~~~V~lw~~~~---------~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
-+|+|. .++++...|.|.+..+.+ ++........|+++|..++|. ..+|++|+. |.|+-|......
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~W~E~~ 92 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWEWNEEE 92 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEeeehhhh
Confidence 456764 455666689999998753 233333334789999999998 446666665 999999754322
Q ss_pred e------eEEe--cCCC-----CceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEE
Q 011916 243 R------VRTF--GGHQ-----TRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 243 ~------~~~~--~~h~-----~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 307 (475)
. +..+ ..|. ..|.++..+ .+-++.++.|+.++.||++ .+.....+++|+..|.++.--.....+
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE-~G~i~r~~rGHtDYvH~vv~R~~~~qi 171 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLE-DGRIQREYRGHTDYVHSVVGRNANGQI 171 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEec-CCEEEEEEcCCcceeeeeeecccCcce
Confidence 1 1111 1222 356666665 3555566689999999999 788899999999999999985556689
Q ss_pred EEEeCCCcEEEEECCCCceeEEEec---------c-ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC
Q 011916 308 ASGGNDNQLLVWNQHSQQPTLRLTE---------H-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~~~~~~~~---------h-~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~ 377 (475)
++|++||+++|||+++++.+..+.. | ...|.+++-+.+ .+++|+ ...+.+|+++..++...+..
T Consensus 172 lsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~ed---WlvCGg---Gp~lslwhLrsse~t~vfpi 245 (325)
T KOG0649|consen 172 LSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNED---WLVCGG---GPKLSLWHLRSSESTCVFPI 245 (325)
T ss_pred eecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCc---eEEecC---CCceeEEeccCCCceEEEec
Confidence 9999999999999999998877643 1 234566666544 556664 67899999999999999999
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEE-EeCCCCEEEEe
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVT-GAGDETLRFWN 450 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s-~s~Dg~I~iW~ 450 (475)
...+..+.|..+ .+++ +...+.|.-|.+. +.............+...|+..--.+++ ++....+.|+.
T Consensus 246 pa~v~~v~F~~d--~vl~--~G~g~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 246 PARVHLVDFVDD--CVLI--GGEGNHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred ccceeEeeeecc--eEEE--eccccceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeeee
Confidence 999999988754 4555 5567788888874 4444555554445666666655444444 45555666654
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-15 Score=139.97 Aligned_cols=195 Identities=21% Similarity=0.224 Sum_probs=153.6
Q ss_pred EEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec
Q 011916 255 GVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 255 ~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
.++++ +|..|++|+.||++++|+.. ....+.....|..+|.++.|+|||++|++-+.| ..+||+.+++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~P-s~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWP-SMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecC-cchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 35555 57899999999999999976 455566677899999999999999999999999 999999999977766542
Q ss_pred --cccceeEEEECCCC---CcEEEEecCCCCCeEEEEECCCCce------eeeecCCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 333 --HTAAVKAIAWSPHQ---SSLLASGGGTADRCIRFWNTSNGHQ------LNSVDTGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 333 --h~~~v~~l~~sp~~---~~ll~sg~Gs~d~~I~iwd~~~~~~------~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
-......+.|+.++ ..++++. -..-+.|+.|++....- .+.+.....|.+++.+++|++++. |+.+
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~-~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~Al--GT~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAAS-QFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLAL--GTMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEe-cCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEE--eccC
Confidence 23445667777665 3233322 12456677777654322 112233457999999999999999 9999
Q ss_pred CeEEEEECCCCceEEEec-CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 402 NQIMVWKYPSMAKVSTLT-GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 402 g~I~iwd~~~~~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
|.|.|++..+.+.+...+ .|...|+.+.|+||.+++++.+.|.+..+..+.-.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 999999999998887765 59999999999999999999999999999988763
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-14 Score=144.16 Aligned_cols=236 Identities=14% Similarity=0.100 Sum_probs=162.5
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCE
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN---LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRI 263 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~ 263 (475)
.|++||........+. .+...+.+.+|+|||+.|+..+. +..|.+|++.+++.... ......+..+.| +|+.
T Consensus 180 ~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCCEEee--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCE
Confidence 7999999877665554 35678999999999999987643 35799999988754332 222233445677 5666
Q ss_pred EEEE-eCCC--cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEeccccce
Q 011916 264 LSSG-SRDR--NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N--QLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 264 l~sg-s~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g--~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
|+.. +.+| .|.+||+.. +. ...+..+...+....|+|||+.|+..+.+ + .|+++|+.+++. ..+..+....
T Consensus 257 La~~~~~~g~~~I~~~d~~t-g~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~ 333 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLAS-GQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQN 333 (429)
T ss_pred EEEEEcCCCCcEEEEEECCC-CC-EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCc
Confidence 6654 4455 488889873 33 34455555678889999999998877754 3 466667776654 3444444556
Q ss_pred eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceEE
Q 011916 338 KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYS-QNQIMVWKYPSMAKVS 416 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~ 416 (475)
....|+|+|+.+++++.......|.+||+.+++... +..........|+|||+.|+.++... ...+.++++ ++....
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~ 411 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFLDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKA 411 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCCCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeE
Confidence 778999999988877642223568999998886543 33333345788999999999853211 124777787 455667
Q ss_pred EecCCCcceEEEEECC
Q 011916 417 TLTGHSLRVLYLATSP 432 (475)
Q Consensus 417 ~l~~h~~~V~~l~~sp 432 (475)
.+.+|.+.+...+|+|
T Consensus 412 ~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 412 RLPATDGQVKFPAWSP 427 (429)
T ss_pred ECccCCCCcCCcccCC
Confidence 7778888899999987
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.7e-14 Score=137.12 Aligned_cols=233 Identities=12% Similarity=0.089 Sum_probs=156.0
Q ss_pred EEecCCC-CEE-EEE-cCCeEEEEECC-CCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCC----ee
Q 011916 173 LVDWSSQ-NVL-AVG-LGTCVYLWTAS-NSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQC----KR 243 (475)
Q Consensus 173 ~l~ws~~-~~l-a~~-~~~~V~lw~~~-~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~----~~ 243 (475)
.+.++++ +.| +++ .++.|.+|++. ++++...-.....+....++|+|+|++|++++. ++.|.+|++++. +.
T Consensus 39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~ 118 (330)
T PRK11028 39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP 118 (330)
T ss_pred cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc
Confidence 4677776 444 433 36889999987 444433322233446778999999999888775 789999998642 22
Q ss_pred eEEecCCCCceEEEEeC--CCEEE-EEeCCCcEEEEECCCCCccE------EEecCccCCEEEEEEcCCCCEEEEEeC-C
Q 011916 244 VRTFGGHQTRAGVLAWN--SRILS-SGSRDRNILQHDLRVSSDYI------CKLAGHKSEVCGLKWSHDDRELASGGN-D 313 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~--~~~l~-sgs~dg~I~iwd~~~~~~~~------~~~~~h~~~V~~l~~s~~~~~lasg~~-D 313 (475)
+..+.+ .....+++++ +++++ +...++.|.+||+...+... .... .......+.|+|+|++++++.. +
T Consensus 119 ~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~ 196 (330)
T PRK11028 119 IQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELN 196 (330)
T ss_pred eeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCC
Confidence 232322 2334556664 56665 55567999999997533221 1111 2234678999999999988876 8
Q ss_pred CcEEEEECCC--Cc--eeEEEecc------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----eeeeecCCC
Q 011916 314 NQLLVWNQHS--QQ--PTLRLTEH------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH----QLNSVDTGS 379 (475)
Q Consensus 314 g~I~iwd~~~--~~--~~~~~~~h------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~----~~~~~~~~~ 379 (475)
+.|.+||+.. ++ .+..+..+ ......+.++|++++++++.. .++.|.+|++.... .+..+..+.
T Consensus 197 ~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--~~~~I~v~~i~~~~~~~~~~~~~~~~~ 274 (330)
T PRK11028 197 SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR--TASLISVFSVSEDGSVLSFEGHQPTET 274 (330)
T ss_pred CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC--CCCeEEEEEEeCCCCeEEEeEEEeccc
Confidence 9999999973 22 23333221 112346889999998888754 68999999986432 233344455
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
....+.|+|+|++|+++ ...++.|.+|++.
T Consensus 275 ~p~~~~~~~dg~~l~va-~~~~~~v~v~~~~ 304 (330)
T PRK11028 275 QPRGFNIDHSGKYLIAA-GQKSHHISVYEID 304 (330)
T ss_pred cCCceEECCCCCEEEEE-EccCCcEEEEEEc
Confidence 66789999999999996 3458899999874
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.2e-16 Score=149.49 Aligned_cols=207 Identities=19% Similarity=0.349 Sum_probs=163.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEe----CCCEEEEEeCCCcEEEEECCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAW----NSRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~----~~~~l~sgs~dg~I~iwd~~~~ 281 (475)
+|.+.|.|+.|+.+|.+|++|+.|-.+.|||.-..+++..+. +|...|.++.| +..++++|..|..|+++|+...
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~ 127 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSS 127 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccc
Confidence 899999999999999999999999999999999888888775 89999999999 5689999999999999999741
Q ss_pred ---------CccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----------EEEeccccceeEEE
Q 011916 282 ---------SDYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPT----------LRLTEHTAAVKAIA 341 (475)
Q Consensus 282 ---------~~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~----------~~~~~h~~~v~~l~ 341 (475)
.........|...|..|+-.|++ +.+.++++||+|+-+|++....- ..+...--..+++.
T Consensus 128 ~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~lt 207 (758)
T KOG1310|consen 128 KEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLT 207 (758)
T ss_pred cccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeee
Confidence 12344456788899999999988 79999999999999999863210 01111223568999
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECCC--------Cc----------eeeeecCC-------------CCeeEEEEcCCC
Q 011916 342 WSPHQSSLLASGGGTADRCIRFWNTSN--------GH----------QLNSVDTG-------------SQVCNLAWSKNV 390 (475)
Q Consensus 342 ~sp~~~~ll~sg~Gs~d~~I~iwd~~~--------~~----------~~~~~~~~-------------~~v~~l~~s~~~ 390 (475)
.+|...+++++|+ .|-..++||.+. +. ++..+..+ ..++-+.|+|+|
T Consensus 208 isp~rp~~laVGg--sdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNG 285 (758)
T KOG1310|consen 208 ISPSRPYYLAVGG--SDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNG 285 (758)
T ss_pred ecCCCCceEEecC--CCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCC
Confidence 9999999999987 899999999431 11 22222110 114567899999
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEE
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKVST 417 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~~~ 417 (475)
.+|++ ......|+++|+...+....
T Consensus 286 tElLv--s~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 286 TELLV--SWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred cEEEE--eeCCeEEEEEeecCCCCcee
Confidence 99999 66677899999987765443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.8e-14 Score=126.85 Aligned_cols=237 Identities=14% Similarity=0.184 Sum_probs=170.4
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC--CceEEEEeCCCEEEE-EeCC------CcEEEEECCCC
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ--TRAGVLAWNSRILSS-GSRD------RNILQHDLRVS 281 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~--~~v~~l~~~~~~l~s-gs~d------g~I~iwd~~~~ 281 (475)
...+++|+.|...+++|..+| .+||+.+--+.......+. -.+..+-|..++|+. |+.+ ..+.|||-. .
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~-k 84 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDL-K 84 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecc-c
Confidence 455699999999999999987 8999987644432222222 334444454555544 3333 479999943 4
Q ss_pred CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeEEEeccccceeEEEECCCCC-cEEEEecCCCCC
Q 011916 282 SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH-SQQPTLRLTEHTAAVKAIAWSPHQS-SLLASGGGTADR 359 (475)
Q Consensus 282 ~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~-~ll~sg~Gs~d~ 359 (475)
..++..+. ...+|.++.+.++ .|++.- .+.|+||... +.+.++.+.....+---.+.+|... .+++.- |..-|
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP-g~k~G 159 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP-GFKTG 159 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC-CCccc
Confidence 45555444 6788999999765 555554 4799999988 5566666654332222334444333 244433 56889
Q ss_pred eEEEEECCCCce---eeeecCCCCeeEEEEcCCCCeEEEEEecCCCe-EEEEECCCCceEEEecC--CCcceEEEEECCC
Q 011916 360 CIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQ-IMVWKYPSMAKVSTLTG--HSLRVLYLATSPD 433 (475)
Q Consensus 360 ~I~iwd~~~~~~---~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~-I~iwd~~~~~~~~~l~~--h~~~V~~l~~spd 433 (475)
.|+|-|+...+. .....|.+.|.+++++.+|..+++ ++..|+ |+|||..+++++.++.. ....|.+|+||||
T Consensus 160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vAT--aStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~ 237 (346)
T KOG2111|consen 160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVAT--ASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN 237 (346)
T ss_pred eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEE--eccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence 999999876655 445578999999999999999999 666775 89999999999999975 3456999999999
Q ss_pred CCEEEEEeCCCCEEEEecCCCCC
Q 011916 434 GQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
..+|+++|.-|+|.|+.+.....
T Consensus 238 ~s~LavsSdKgTlHiF~l~~~~~ 260 (346)
T KOG2111|consen 238 SSWLAVSSDKGTLHIFSLRDTEN 260 (346)
T ss_pred ccEEEEEcCCCeEEEEEeecCCC
Confidence 99999999999999999987553
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-14 Score=145.28 Aligned_cols=275 Identities=13% Similarity=0.197 Sum_probs=191.0
Q ss_pred EEecCCC-CEEEEEcCCeEEEEECCCCcEEEEe----eCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----Cee
Q 011916 173 LVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLC----DLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ----CKR 243 (475)
Q Consensus 173 ~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~----~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~----~~~ 243 (475)
++..++. .+.....+..+++|+...+. .... ...|...+++++++|+++++|+|..||.|.+|.--. ...
T Consensus 165 ~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t 243 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSET 243 (792)
T ss_pred cEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccccc
Confidence 3455554 67777888899999998865 2221 225666789999999999999999999999997322 233
Q ss_pred eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 244 VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
...+.-|...|.+++| +|.+|++|+..|.+.+|.+.+.. .+-+..-.+.|..+.++||+.+.+....|+.|.+...
T Consensus 244 ~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 244 CTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKA 321 (792)
T ss_pred ceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEec
Confidence 4556679999999999 68999999999999999998544 4556667789999999999999999999999999987
Q ss_pred CCCceeEEEec-----------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------------
Q 011916 322 HSQQPTLRLTE-----------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-------------- 376 (475)
Q Consensus 322 ~~~~~~~~~~~-----------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-------------- 376 (475)
.+......+.+ ..+-.+.++++|--..++..| ..+.|.+||+.+.+.+..+.
T Consensus 322 ~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~---~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~ 398 (792)
T KOG1963|consen 322 SDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG---HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQ 398 (792)
T ss_pred cchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC---CCceEEEEeccccceeeeEEEEeecccCCcceeE
Confidence 65443333222 234467788888444344433 68888888876543332221
Q ss_pred -------------------------------------------------------CCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 377 -------------------------------------------------------TGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 377 -------------------------------------------------------~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
|+..+...++.+..+..-+++.+.|
T Consensus 399 v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~d 478 (792)
T KOG1963|consen 399 VGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVD 478 (792)
T ss_pred EeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccC
Confidence 1111111122221111011225688
Q ss_pred CeEEEEECCCC----------ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 402 NQIMVWKYPSM----------AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 402 g~I~iwd~~~~----------~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
|.++||-+... .+...-.-|..+++.++|+.||..| +.+.|++|.+||..+.
T Consensus 479 g~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 479 GDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDTK 540 (792)
T ss_pred CeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCCh
Confidence 99999987322 2222222378889999999999655 5667889999999883
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-14 Score=145.21 Aligned_cols=280 Identities=18% Similarity=0.261 Sum_probs=207.7
Q ss_pred EecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 174 VDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREG---SYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 174 l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg---~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
-.+|++ ..+.+..+..|.||...++..+..+. +|..+++.+.+.|.. .++++++.+|.|++||...+.+++++..
T Consensus 22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~ 100 (792)
T KOG1963|consen 22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLE-DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDN 100 (792)
T ss_pred cccccCCcEEEEeeCCEEEEEecchHhhhhhcc-cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEec
Confidence 456666 67888889999999999999888765 889999999998854 4788999999999999999888877653
Q ss_pred CCCc-------------eEEEEeCC----------------------------------------------CEEEEEeCC
Q 011916 250 HQTR-------------AGVLAWNS----------------------------------------------RILSSGSRD 270 (475)
Q Consensus 250 h~~~-------------v~~l~~~~----------------------------------------------~~l~sgs~d 270 (475)
+... +....+.+ ..+.....+
T Consensus 101 ~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~ 180 (792)
T KOG1963|consen 101 NLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHM 180 (792)
T ss_pred CCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEe
Confidence 2110 00000000 011111223
Q ss_pred CcEEEEECCCCCccEE---EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--C--ceeEEEeccccceeEEEEC
Q 011916 271 RNILQHDLRVSSDYIC---KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS--Q--QPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~---~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~--~--~~~~~~~~h~~~v~~l~~s 343 (475)
..+.+|+.....+... .-..|.-.+++.++||+++++|+|..||.|.+|.--. . .....+.-|...|.+++|+
T Consensus 181 ~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS 260 (792)
T KOG1963|consen 181 CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFS 260 (792)
T ss_pred eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEe
Confidence 3455565553221110 1123556689999999999999999999999997443 1 2245667799999999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC--
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH-- 421 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-- 421 (475)
++|.+|+. || ..+.+.+|.+.+++....-..++.|..+.++||+....+ ...|++|.+....+++...++.+-
T Consensus 261 ~~G~~LlS-GG--~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl--~~~DNqI~li~~~dl~~k~tIsgi~~ 335 (792)
T KOG1963|consen 261 SDGAYLLS-GG--REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSL--VLEDNQIHLIKASDLEIKSTISGIKP 335 (792)
T ss_pred cCCceEee-cc--cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEE--EecCceEEEEeccchhhhhhccCccC
Confidence 99997666 44 899999999999995555578899999999999999888 457999999999887766655542
Q ss_pred ---------CcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 422 ---------SLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 422 ---------~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
.+-.+.++++|.-+.++-.+..|.|.+||+.+......
T Consensus 336 ~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~ 382 (792)
T KOG1963|consen 336 PTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYK 382 (792)
T ss_pred CCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeee
Confidence 23367889999777888889999999999987765543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-14 Score=130.07 Aligned_cols=278 Identities=18% Similarity=0.288 Sum_probs=183.3
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC---
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQ--- 240 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~--- 240 (475)
....+..++|++. .++.++.|..|++|+........+.. .....|+|++|-| .+..|++|+.. -|.||....
T Consensus 97 s~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks-~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln 174 (445)
T KOG2139|consen 97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKS-VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLN 174 (445)
T ss_pred hhcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecc-hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccc
Confidence 3456778999986 35556679999999988844444332 4467899999999 45788888885 599998643
Q ss_pred -CeeeE----------EecCCCCceEEEEeC--CCEEEEEe-CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 241 -CKRVR----------TFGGHQTRAGVLAWN--SRILSSGS-RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 241 -~~~~~----------~~~~h~~~v~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
+..++ ...+| ..|+++.|+ |..+++++ .|..|.|||...... +.......+.+.-+.||||+.+
T Consensus 175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-IPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-ccccccCCCceeeEEEcCCCCE
Confidence 12111 22244 689999995 67777776 567899999985433 3223344567889999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC----C--------ce---
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN----G--------HQ--- 371 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~----~--------~~--- 371 (475)
|+.+.-|+..++|......-........+.|....|+|+|+.|+.+.+ +.-++|.+.- + +.
T Consensus 253 lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s----gsp~lysl~f~~~~~~~~~~~~~k~~ll 328 (445)
T KOG2139|consen 253 LFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS----GSPRLYSLTFDGEDSVFLRPQSIKRVLL 328 (445)
T ss_pred EEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc----CCceEEEEeecCCCccccCcccceeeee
Confidence 999999999999965433222222234568999999999999998875 3333333221 0 00
Q ss_pred eeee----------cCCCCeeEEEEcCCCCeEEEEEecCC------CeEEEEECCCCceEEEec-C--CCcceEEEEECC
Q 011916 372 LNSV----------DTGSQVCNLAWSKNVNELVSTHGYSQ------NQIMVWKYPSMAKVSTLT-G--HSLRVLYLATSP 432 (475)
Q Consensus 372 ~~~~----------~~~~~v~~l~~s~~~~~l~~~~g~~d------g~I~iwd~~~~~~~~~l~-~--h~~~V~~l~~sp 432 (475)
+..+ ...+.+.+++|.|.|.+|+++--..+ ..|.+||.+..-.+.-.. + .......+.|+|
T Consensus 329 iaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~p 408 (445)
T KOG2139|consen 329 IADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGP 408 (445)
T ss_pred eccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeee
Confidence 1111 02467889999999999999532221 246677765443332221 1 111245566665
Q ss_pred ---CCCEEEEEeCCCCEEEEecC
Q 011916 433 ---DGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 433 ---dg~~l~s~s~Dg~I~iW~~~ 452 (475)
+|.+|..+=..|.+.-|.+.
T Consensus 409 l~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 409 LKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred cccCCcEEEEEeccCceEeeeeE
Confidence 56677777677888777764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-13 Score=135.58 Aligned_cols=278 Identities=15% Similarity=0.147 Sum_probs=183.8
Q ss_pred CCEEEEE--cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEE
Q 011916 179 QNVLAVG--LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGV 256 (475)
Q Consensus 179 ~~~la~~--~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 256 (475)
.+++.+. .++.|.+.|..+.+.+..+..+ ...-..+.|+|||+++++++.||.|.++|+.+.+.+.++..... ...
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~-~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~ 82 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTG-GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRG 82 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-S-TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCC-CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cce
Confidence 3555443 4799999999999999988643 23345578999999999999999999999999999998874333 344
Q ss_pred EEe--CCCEEEEEe-CCCcEEEEECCCCCccEEEecC-------ccCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCc
Q 011916 257 LAW--NSRILSSGS-RDRNILQHDLRVSSDYICKLAG-------HKSEVCGLKWSHDDRELASGGN-DNQLLVWNQHSQQ 325 (475)
Q Consensus 257 l~~--~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~-------h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd~~~~~ 325 (475)
+++ +|++++++. .++.+.++|.+ ..+.++.+.. ....+.+|..++....++..-. .+.|.+.|....+
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EEEcCCCCEEEEEecCCCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 555 788887665 68999999998 4555555443 2346888888998886665544 4888888987765
Q ss_pred eeE-EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----------------------------
Q 011916 326 PTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---------------------------- 376 (475)
Q Consensus 326 ~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---------------------------- 376 (475)
.+. .............|+|++++++++.. .++.|.++|..+++.+..++
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~ 239 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLG 239 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSS
T ss_pred ccceeeecccccccccccCcccceeeeccc--ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccc
Confidence 443 23334456778999999998888654 57788888887765443221
Q ss_pred ---------------------------CCCCeeEEEEcCCCCeEEEEE--ecCCCeEEEEECCCCceEEEecCCC-cceE
Q 011916 377 ---------------------------TGSQVCNLAWSKNVNELVSTH--GYSQNQIMVWKYPSMAKVSTLTGHS-LRVL 426 (475)
Q Consensus 377 ---------------------------~~~~v~~l~~s~~~~~l~~~~--g~~dg~I~iwd~~~~~~~~~l~~h~-~~V~ 426 (475)
..+.-.-+..+|+++++.+.. +...+.|.++|..+.+.+.++.... .++.
T Consensus 240 ~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~ 319 (369)
T PF02239_consen 240 YFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVV 319 (369)
T ss_dssp SSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EE
T ss_pred ceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEe
Confidence 111223445688999988830 1346799999999998888775322 3599
Q ss_pred EEEECCCCCEEEEEeCC--CCEEEEecCCCCCCCCcc
Q 011916 427 YLATSPDGQTIVTGAGD--ETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 427 ~l~~spdg~~l~s~s~D--g~I~iW~~~~~~~~~~~~ 461 (475)
++.|++||+.+..+..+ +.|.+||..+.+....+.
T Consensus 320 h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 320 HMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp EEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred ccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99999999977665544 369999999887766543
|
... |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-14 Score=141.62 Aligned_cols=236 Identities=16% Similarity=0.158 Sum_probs=164.7
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEecCCCCceEEEEe--CCC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN---LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSR 262 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~ 262 (475)
..|++||..+.....+. .+...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+...+| +|+
T Consensus 182 ~~l~~~d~dg~~~~~lt--~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~ 258 (435)
T PRK05137 182 KRLAIMDQDGANVRYLT--DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGR 258 (435)
T ss_pred eEEEEECCCCCCcEEEe--cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCC
Confidence 37999999777665554 56778999999999999988764 468999999887653 34455666777788 466
Q ss_pred EE-EEEeCCCc--EEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC---CcEEEEECCCCceeEEEeccccc
Q 011916 263 IL-SSGSRDRN--ILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND---NQLLVWNQHSQQPTLRLTEHTAA 336 (475)
Q Consensus 263 ~l-~sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D---g~I~iwd~~~~~~~~~~~~h~~~ 336 (475)
.| ++.+.++. |.+||+. ......+..+........|+|||+.|+..+.. ..|++||+..++. ..+..+...
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~--~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~ 335 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLR--SGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR 335 (435)
T ss_pred EEEEEEecCCCceEEEEECC--CCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc
Confidence 55 46666665 6666776 33345566666667789999999998887642 3688889876654 344444556
Q ss_pred eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC----CeEEEEECCCC
Q 011916 337 VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ----NQIMVWKYPSM 412 (475)
Q Consensus 337 v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d----g~I~iwd~~~~ 412 (475)
+....|+|+|+.++.+.....+..|.+||+.++.. ..+.....+....|+|+|+.|+.+..... ..|+++|+..+
T Consensus 336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 77789999999888875322235789999865543 34444445778999999999887543222 36888888665
Q ss_pred ceEEEecCCCcceEEEEECC
Q 011916 413 AKVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 413 ~~~~~l~~h~~~V~~l~~sp 432 (475)
.. ..+. ..+.+...+|+|
T Consensus 415 ~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 415 NE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred ce-EEcc-CCCCccCcccCC
Confidence 44 3443 244466677776
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.5e-15 Score=133.42 Aligned_cols=229 Identities=17% Similarity=0.268 Sum_probs=177.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC-
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---KRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS- 282 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~- 282 (475)
.++|+|.+|++|+..+|++..+..|.||..... +..+++..|...|+.+.|+ .+.|++|+.|..-++|.....+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~ 89 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT 89 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCe
Confidence 478999999999999999999999999997654 5778899999999999996 4789999999999999985344
Q ss_pred -ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee----EEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 283 -DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT----LRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 283 -~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~----~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
+....+..++..++++.|+|.++.+|+|+.-..|.||-++....= +.-+.+...|.++.|+|++- |+++|+ .
T Consensus 90 WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnV-LlaaGs--~ 166 (361)
T KOG1523|consen 90 WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNV-LLAAGS--T 166 (361)
T ss_pred eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcc-eecccc--c
Confidence 344556678999999999999999999999999999988754321 12234678899999999987 566644 9
Q ss_pred CCeEEEEECC-----C-------------Cceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEE
Q 011916 358 DRCIRFWNTS-----N-------------GHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVST 417 (475)
Q Consensus 358 d~~I~iwd~~-----~-------------~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~ 417 (475)
|+++++|..- . |+.+.+. ..++.+..+.|+|+|..|+- -..|..+.+-|..... .+..
T Consensus 167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~law--v~Hds~v~~~da~~p~~~v~~ 244 (361)
T KOG1523|consen 167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAW--VGHDSTVSFVDAAGPSERVQS 244 (361)
T ss_pred CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeE--ecCCCceEEeecCCCchhccc
Confidence 9999999742 1 1223333 35678999999999999998 5578999999986654 3444
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
+....-+.+++.|-.+.. ++.++.|
T Consensus 245 ~~~~~lP~ls~~~ise~~-vv~ag~~ 269 (361)
T KOG1523|consen 245 VATAQLPLLSVSWISENS-VVAAGYD 269 (361)
T ss_pred hhhccCCceeeEeecCCc-eeecCCC
Confidence 444446677777765543 3333344
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-16 Score=160.39 Aligned_cols=238 Identities=19% Similarity=0.334 Sum_probs=184.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|...|.|+.|...|.++++|+.|..|+||..+++.++....||.+.|+.++.+ ..++++++.|..|++|.+. .+..
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~-~~~p 266 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP-DGAP 266 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecC-CCch
Confidence 788999999999999999999999999999999999999999999999999984 5788999999999999998 7888
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-----EEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL-----RLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~-----~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
+..+.+|++.|++|+|+|-. +.+.||++++||.+-.-.+. .+. ....+..+.|...+..+++ |+.|+
T Consensus 267 vsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~-~~~~~~s~~~~~~~~~f~T---gs~d~ 338 (1113)
T KOG0644|consen 267 VSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFT-EKDLVDSILFENNGDRFLT---GSRDG 338 (1113)
T ss_pred HHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcc-cccceeeeecccccccccc---ccCCc
Confidence 89999999999999999954 77889999999998211111 111 2355667777777764444 45888
Q ss_pred eEEEEECCCCceeeeecCCCCeeEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC-CEE
Q 011916 360 CIRFWNTSNGHQLNSVDTGSQVCNLAWSKNV-NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG-QTI 437 (475)
Q Consensus 360 ~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~-~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~l 437 (475)
.-..|.+...... ...+.-+.++.+. .+.++ .-.+-.+++|++.++..+..+.+|...+..|.++|-+ ...
T Consensus 339 ea~n~e~~~l~~~-----~~~lif~t~ssd~~~~~~~--ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~ 411 (1113)
T KOG0644|consen 339 EARNHEFEQLAWR-----SNLLIFVTRSSDLSSIVVT--ARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIA 411 (1113)
T ss_pred ccccchhhHhhhh-----ccceEEEecccccccccee--eeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhh
Confidence 8777765421110 0011111111122 23333 4567789999999999999999999999999999954 556
Q ss_pred EEEeCCCCEEEEecCCCCCCCCc
Q 011916 438 VTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 438 ~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
.+++.||...|||+-.+.+.+..
T Consensus 412 msag~dgst~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 412 MSAGYDGSTIIWDIWEGIPIKHY 434 (1113)
T ss_pred hhccCCCceEeeecccCCcceee
Confidence 68899999999999988776653
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-14 Score=143.45 Aligned_cols=239 Identities=13% Similarity=0.063 Sum_probs=161.0
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEecCCCCceEEEEe--CCC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSR 262 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~ 262 (475)
..|+++|........+. .+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... ....+.+.+.+| +++
T Consensus 176 ~~L~~~D~dG~~~~~l~--~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDADGQNAQSAL--SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-ANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCCCCCceEec--cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCC
Confidence 46888888655544443 456789999999999999887753 3599999998865433 333345567788 456
Q ss_pred EEE-EEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-CCcEEEEE--CCCCceeEEEecccccee
Q 011916 263 ILS-SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-DNQLLVWN--QHSQQPTLRLTEHTAAVK 338 (475)
Q Consensus 263 ~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd--~~~~~~~~~~~~h~~~v~ 338 (475)
.|+ +.+.+|...||.+.........+..+...+....|+|||+.|+..+. ++...||. +.++.. ..+..+.....
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~ 331 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNT 331 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcC
Confidence 665 56788887777665444445566666666677899999998887654 45555554 444443 22222333345
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEE
Q 011916 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVS 416 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~ 416 (475)
..+|+|+|++++.+.....+..|.+||+.+++..... .........|+|+|+.|+.+.. ..| .+++.+. ++....
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~~~~~~p~~spdg~~l~~~~~-~~g~~~l~~~~~-~g~~~~ 408 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT-DTTRDESPSFAPNGRYILYATQ-QGGRSVLAAVSS-DGRIKQ 408 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CCCCccCceECCCCCEEEEEEe-cCCCEEEEEEEC-CCCceE
Confidence 6899999998887653111237999999888755433 3334567899999999988632 333 4666666 455566
Q ss_pred EecCCCcceEEEEECCC
Q 011916 417 TLTGHSLRVLYLATSPD 433 (475)
Q Consensus 417 ~l~~h~~~V~~l~~spd 433 (475)
.+..+.+.+...+|+|-
T Consensus 409 ~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 409 RLSVQGGDVREPSWGPF 425 (427)
T ss_pred EeecCCCCCCCCccCCC
Confidence 66667777888888873
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-15 Score=146.04 Aligned_cols=248 Identities=17% Similarity=0.191 Sum_probs=175.9
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECCC------CcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTASN------SKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~~------~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~ 240 (475)
.+..+.+.+- .+++++.++.+.+|++.. ..+..++.+ +|.++|.|++..+++.++++|+-||+|+.|++..
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~ 375 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPP 375 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCC
Confidence 3555666553 688888899999999932 234444444 8999999999999999999999999999996532
Q ss_pred ----------CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC-CEE
Q 011916 241 ----------CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD-REL 307 (475)
Q Consensus 241 ----------~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l 307 (475)
......+.||...|+.++++ ...|++++.||++++|+......+........+.-.++.+-... ...
T Consensus 376 n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~ 455 (577)
T KOG0642|consen 376 NQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHS 455 (577)
T ss_pred CCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhh
Confidence 12345678999999999996 47899999999999999873333111111112223444443222 122
Q ss_pred EEEeCCCcEEEEECCCCceeEEEec-------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCC
Q 011916 308 ASGGNDNQLLVWNQHSQQPTLRLTE-------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGS 379 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~ 379 (475)
++...-+.-.++++.....+..+.. ....+..+.++|.+. +..++. .|+.|+++|..++..+... .+..
T Consensus 456 ~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~-~~~~~h--ed~~Ir~~dn~~~~~l~s~~a~~~ 532 (577)
T KOG0642|consen 456 LASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTAD-ITFTAH--EDRSIRFFDNKTGKILHSMVAHKD 532 (577)
T ss_pred hhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCC-eeEecc--cCCceecccccccccchheeeccc
Confidence 2222223333444444443333321 124577889999997 555544 8999999999999988776 5778
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
.++++++.|+|.+|++ |..|+.+++|.+....++.....|.
T Consensus 533 svtslai~~ng~~l~s--~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMS--GSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eecceeecCCCceEEe--ecCCceeehhhccchheeecccccc
Confidence 8999999999999999 9999999999998877777666664
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-14 Score=146.45 Aligned_cols=209 Identities=18% Similarity=0.177 Sum_probs=146.2
Q ss_pred CCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCC---CcEEEEECCCCCc-cEEEecCccCCEEEEEEcCC
Q 011916 230 LGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRD---RNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d---g~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~ 303 (475)
+..|.+||..... .+.+..|...+...+|+ ++.|+.++.+ ..|.+||+..... .+..+.+| ...++|+||
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPD 258 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPD 258 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCC
Confidence 4689999986554 45677788889999994 6778777643 4699999974322 22223333 446899999
Q ss_pred CCEEEEEe-CCCcEE--EEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-CceeeeecCCC
Q 011916 304 DRELASGG-NDNQLL--VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVDTGS 379 (475)
Q Consensus 304 ~~~lasg~-~Dg~I~--iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~~~~ 379 (475)
|+.|+.+. .+|.+. +||+.++. ...+..+...+....|+|||+.+++++. .++...||++.. +.....+.+..
T Consensus 259 G~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~~~~~~~l~~~~ 335 (429)
T PRK01742 259 GSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSASGGGASLVGGRG 335 (429)
T ss_pred CCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEecCCC
Confidence 99888765 577655 45666655 4556667777889999999998887754 567777776543 22223333322
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
....|+|+|+.|+++ .. ..+.+||+.+++.......+ ....+.|+|||++|+.++.++.+.+|.+.
T Consensus 336 --~~~~~SpDG~~ia~~--~~-~~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 336 --YSAQISADGKTLVMI--NG-DNVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLV 401 (429)
T ss_pred --CCccCCCCCCEEEEE--cC-CCEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence 467899999999884 23 45777999888654322222 23567899999999999999999888864
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.4e-14 Score=141.76 Aligned_cols=236 Identities=16% Similarity=0.143 Sum_probs=162.4
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEecCCCCceEEEEe--CCCE
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRI 263 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~ 263 (475)
.|++||........+. .+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +..+.+...++.| +++.
T Consensus 185 ~l~i~D~~g~~~~~lt--~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~ 261 (433)
T PRK04922 185 ALQVADSDGYNPQTIL--RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRR 261 (433)
T ss_pred EEEEECCCCCCceEee--cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCE
Confidence 6999998766655554 456789999999999999988743 469999998876543 3333444556777 4665
Q ss_pred E-EEEeCCC--cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-CC--cEEEEECCCCceeEEEeccccce
Q 011916 264 L-SSGSRDR--NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-DN--QLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 264 l-~sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-Dg--~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
| ++.+.+| .|.+||+.. + ....+..+.......+|+|||++|+.++. +| .|+++|+.+++.. .+..+....
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~-g-~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~g~~~ 338 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGS-R-QLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQGNYN 338 (433)
T ss_pred EEEEEeCCCCceEEEEECCC-C-CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecCCCCc
Confidence 5 4556666 588889873 3 34455556656678899999998887764 34 4777787776543 333333445
Q ss_pred eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEE
Q 011916 338 KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVS 416 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~ 416 (475)
..++|+|+|+.++.+........|.+||+.+++.. .+..+.......|+|+|+.++.+... ..+.|++++.. +....
T Consensus 339 ~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~ 416 (433)
T PRK04922 339 ARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQ 416 (433)
T ss_pred cCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceE
Confidence 57899999998887653112347999999888765 34344345678999999998875332 23468888884 44556
Q ss_pred EecCCCcceEEEEECC
Q 011916 417 TLTGHSLRVLYLATSP 432 (475)
Q Consensus 417 ~l~~h~~~V~~l~~sp 432 (475)
.+..+.+.+...+|+|
T Consensus 417 ~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 417 RLVSADGEVREPAWSP 432 (433)
T ss_pred EcccCCCCCCCCccCC
Confidence 6666667777888876
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.6e-14 Score=146.88 Aligned_cols=293 Identities=18% Similarity=0.215 Sum_probs=197.6
Q ss_pred CceeccCCCCCCCCceeEEecCCC---CEEEEEcCCeEEEEECCCC-----cEEEEeeCC-CCCcEEEEEEcCCCCEEEE
Q 011916 156 PHKVLDAPSLQDDFYLNLVDWSSQ---NVLAVGLGTCVYLWTASNS-----KVTRLCDLG-PGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 156 p~~~l~~p~~~~d~~v~~l~ws~~---~~la~~~~~~V~lw~~~~~-----~~~~~~~~~-~~~~V~~v~~spdg~~la~ 226 (475)
|..++-|.-+.+.--++.++-+++ -+++++.||+|++|+...- .....+... .+..+.++...+.++.+|+
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av 1115 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAV 1115 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEE
Confidence 555666655555555666666654 3677777999999998642 111222222 5678999999999999999
Q ss_pred EeCCCeEEEEECCCC-------eeeEEecCC-CCce-EEEEeC---C-CEEEEEeCCCcEEEEECCCCCc-cEEEecCcc
Q 011916 227 GTNLGQVQVWDGTQC-------KRVRTFGGH-QTRA-GVLAWN---S-RILSSGSRDRNILQHDLRVSSD-YICKLAGHK 292 (475)
Q Consensus 227 g~~dg~v~iwd~~~~-------~~~~~~~~h-~~~v-~~l~~~---~-~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~ 292 (475)
|+.||.|++.+++.. .+.+....+ .+.+ ...++. . ..|+.+...+.|..||++.... ...+.....
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 999999999998752 122222222 2233 333442 3 4888899999999999984322 122233345
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-ccccceeEEEECCCCC--cEEEEecCCCCCeEEEEECCCC
Q 011916 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-EHTAAVKAIAWSPHQS--SLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
+.|++++.+|.++++++|+..|.+.+||++-+.++.... .+..++..+..+|--. ...++++-+..+.|.+|++.+|
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 779999999999999999999999999999888876654 2557888888877544 4444443236889999999999
Q ss_pred ceeeeecCCCC--------------------eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE--------------
Q 011916 370 HQLNSVDTGSQ--------------------VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKV-------------- 415 (475)
Q Consensus 370 ~~~~~~~~~~~--------------------v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~-------------- 415 (475)
.+...+-.... .....+...+..+++ |++|..|+.||....+..
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt--ggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT--GGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee--cCCccceeeccCCCcccccccccCcccccccc
Confidence 77665532211 112223333444555 889999999997421110
Q ss_pred ----------------------------------EEe--------cCCCcceEEEEECCCC-CEEEEEeCCCCEEEEe
Q 011916 416 ----------------------------------STL--------TGHSLRVLYLATSPDG-QTIVTGAGDETLRFWN 450 (475)
Q Consensus 416 ----------------------------------~~l--------~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iW~ 450 (475)
..+ ..|...|++|++.... .+|++++.||.|+||.
T Consensus 1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 000 1367788888876543 5888999999999995
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-12 Score=118.80 Aligned_cols=273 Identities=14% Similarity=0.228 Sum_probs=189.2
Q ss_pred EecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE-EeCC------CeEEEEECCCCeeeE
Q 011916 174 VDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV-GTNL------GQVQVWDGTQCKRVR 245 (475)
Q Consensus 174 l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~-g~~d------g~v~iwd~~~~~~~~ 245 (475)
++|..| ..++++.+...+||+.+--+....-+.. .+.+.-+..--..++||. |+.+ ..|.|||-...+++.
T Consensus 11 vs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~-~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~i~ 89 (346)
T KOG2111|consen 11 VSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFI-DGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERCII 89 (346)
T ss_pred EEEccCCceEEEEecCceEEEecCchhhhhhhccc-cCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcEEE
Confidence 899987 7999999999999998763322111111 111222222223445554 4333 469999976677777
Q ss_pred EecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecC--ccCCEEEEEEcCCCCEEEE-EeCCCcEEEEECC
Q 011916 246 TFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAG--HKSEVCGLKWSHDDRELAS-GGNDNQLLVWNQH 322 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s~~~~~las-g~~Dg~I~iwd~~ 322 (475)
++. ....|.++....+.|++.- .+.|.||.....-+.+..+.. ....+++++-..+..+||. |-.-|.|.|-|+.
T Consensus 90 el~-f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 90 ELS-FNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLA 167 (346)
T ss_pred EEE-eccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhh
Confidence 765 5678999999888877775 468999988754444444332 2234666654445556665 3456899999998
Q ss_pred CCce--eEEEeccccceeEEEECCCCCcEEEEecCCCCCe-EEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEEE
Q 011916 323 SQQP--TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC-IRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVST 396 (475)
Q Consensus 323 ~~~~--~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~-I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~ 396 (475)
..+. ...+..|...|.+++.+-+|. ++|+++ ..|+ |+|||..+|..+.++..+ ..|++++|+|++.+|++
T Consensus 168 ~~~~~~p~~I~AH~s~Iacv~Ln~~Gt-~vATaS--tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lav- 243 (346)
T KOG2111|consen 168 STKPNAPSIINAHDSDIACVALNLQGT-LVATAS--TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAV- 243 (346)
T ss_pred hcCcCCceEEEcccCceeEEEEcCCcc-EEEEec--cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEE-
Confidence 6655 467789999999999999998 666664 5555 899999999999999644 57999999999999999
Q ss_pred EecCCCeEEEEECCCCc---e---------------------EEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 397 HGYSQNQIMVWKYPSMA---K---------------------VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~---~---------------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
.++.|+|+||.++... . +..++-..+...-++|..+.+.++..+.||+.+-+.+.
T Consensus 244 -sSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 244 -SSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred -EcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 7789999999875421 1 11122223445567787776677777788987766665
Q ss_pred CC
Q 011916 453 PS 454 (475)
Q Consensus 453 ~~ 454 (475)
+.
T Consensus 323 ~~ 324 (346)
T KOG2111|consen 323 PK 324 (346)
T ss_pred cc
Confidence 44
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-15 Score=144.00 Aligned_cols=212 Identities=21% Similarity=0.288 Sum_probs=161.3
Q ss_pred eeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC--CCCEEEEEeCCCcEEE
Q 011916 243 RVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH--DDRELASGGNDNQLLV 318 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~--~~~~lasg~~Dg~I~i 318 (475)
+...+.||++.|.|+.| +|.+|++|+.|-.+.|||.-..+.....-.+|.+.|.+++|-| +.+++++|..|..|++
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 44568899999999999 5899999999999999999844444455678999999999999 5679999999999999
Q ss_pred EECCC----------CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee-e----------cC
Q 011916 319 WNQHS----------QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS-V----------DT 377 (475)
Q Consensus 319 wd~~~----------~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~-~----------~~ 377 (475)
+|+.. ......+..|...|+.|+-.|++...+-+++ +||+|+-+|++....-.. . ..
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas--EDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS--EDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec--CCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99984 2344556679999999999999988888876 999999999986321111 0 01
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC--------Cc----------eEEEe-cCCC-----------cceEE
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--------MA----------KVSTL-TGHS-----------LRVLY 427 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--------~~----------~~~~l-~~h~-----------~~V~~ 427 (475)
--...++.++|...+++++ |.++-..++||.+. +. ++..+ .+|- ..++.
T Consensus 200 lielk~ltisp~rp~~laV-GgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~ 278 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAV-GGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTY 278 (758)
T ss_pred hheeeeeeecCCCCceEEe-cCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEE
Confidence 1346788999988776665 88899999999421 11 12222 1222 12577
Q ss_pred EEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 428 LATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 428 l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+.|+|+|.-|+..-....|+++|+...+..
T Consensus 279 vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 279 VTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred EEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 899999987776666678999999876654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.4e-14 Score=130.69 Aligned_cols=239 Identities=18% Similarity=0.296 Sum_probs=168.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+-.+..++|++.-..+|++..|-.|++||-.. +....++ ..+..|+|++|. ...|+.|++. -|.+|........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCccccc
Confidence 34677899999777889999999999999766 4444444 345689999994 4778888775 4889977533221
Q ss_pred -------------EEEecCccCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEE
Q 011916 285 -------------ICKLAGHKSEVCGLKWSHDDRELASGGN-DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLL 350 (475)
Q Consensus 285 -------------~~~~~~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll 350 (475)
+....+| ..|+++.|++||..+++++. |..|.|||..++..+.......+.+.-+.|+||+.+++
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred ccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 2223344 57999999999999999875 56899999998876654445567889999999999988
Q ss_pred EEecCCCCCeEEEEE-CCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-------------ceEE
Q 011916 351 ASGGGTADRCIRFWN-TSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-------------AKVS 416 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd-~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-------------~~~~ 416 (475)
++. -|+..++|+ .++.....-.-..+.|...+|+|+|+.|+.++ +..-.|+-..+... ..+.
T Consensus 255 aAt---~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~-sgsp~lysl~f~~~~~~~~~~~~~k~~llia 330 (445)
T KOG2139|consen 255 AAT---CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFAC-SGSPRLYSLTFDGEDSVFLRPQSIKRVLLIA 330 (445)
T ss_pred Eec---ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEE-cCCceEEEEeecCCCccccCcccceeeeeec
Confidence 864 699999995 44555555555667999999999999988753 22222322222110 0111
Q ss_pred Eec------C---CCcceEEEEECCCCCEEEEEeCCC--------CEEEEecCCC
Q 011916 417 TLT------G---HSLRVLYLATSPDGQTIVTGAGDE--------TLRFWNVFPS 454 (475)
Q Consensus 417 ~l~------~---h~~~V~~l~~spdg~~l~s~s~Dg--------~I~iW~~~~~ 454 (475)
.+. + -.+.+.+|+|.|.|.+||+.-..+ .|.+||....
T Consensus 331 DL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 331 DLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred cchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 111 1 146688999999999999874433 3556665543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-14 Score=126.75 Aligned_cols=156 Identities=19% Similarity=0.365 Sum_probs=115.7
Q ss_pred EEEEEEcCCCCEEEEEeC----------CCcEEEEECCC-CceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 295 VCGLKWSHDDRELASGGN----------DNQLLVWNQHS-QQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~----------Dg~I~iwd~~~-~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
-..+.|+++|++|+.-.. -+...+|.++. ..++..+.- ..+.|.+++|+|+|..++++. |..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccE
Confidence 457889999987776433 12344555432 223333332 345799999999999887665 35778999
Q ss_pred EEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEE-ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 363 FWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH-GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 363 iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~-g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
+||++ ++.+..+. ...+..+.|+|+|++|+++. +...|.|.+||..+.+.+.+.. |. .++.++|+|||++|++++
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcCCCCEEEEEE
Confidence 99996 67777765 45678899999999999852 2345789999999988887765 33 478999999999999986
Q ss_pred C------CCCEEEEecCCCC
Q 011916 442 G------DETLRFWNVFPSL 455 (475)
Q Consensus 442 ~------Dg~I~iW~~~~~~ 455 (475)
. |..++||++....
T Consensus 163 t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred eccceeccccEEEEEecCeE
Confidence 4 7889999987554
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.9e-15 Score=141.67 Aligned_cols=251 Identities=20% Similarity=0.312 Sum_probs=197.5
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEe----CCCEEEEEeCCCcEEEEECCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAW----NSRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~----~~~~l~sgs~dg~I~iwd~~~~ 281 (475)
.|.+.|..|.|+..|..|++|+.|..|.+||...++....+. +|...|..-.| +...+++++.||.+++=.+...
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 789999999999999999999999999999999888777765 79888887777 2478999999999999887655
Q ss_pred Ccc--EEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEEec---ccc---ceeEEEECCCCCcEEEE
Q 011916 282 SDY--ICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLRLTE---HTA---AVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 282 ~~~--~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~---h~~---~v~~l~~sp~~~~ll~s 352 (475)
+.+ ...+..|.+.|..++.-|+. ..|.+++.|+.+.-+|++...+...+.. +.. ...+|+..|-..+.+++
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV 299 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV 299 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence 443 35577899999999999854 5789999999999999998765443322 233 56889999999999999
Q ss_pred ecCCCCCeEEEEECCCCce------eeee-------cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC--C-----
Q 011916 353 GGGTADRCIRFWNTSNGHQ------LNSV-------DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--M----- 412 (475)
Q Consensus 353 g~Gs~d~~I~iwd~~~~~~------~~~~-------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--~----- 412 (475)
|+ .|..+++||.+.-.. +..+ +..-.|++++|+.++..|++ .+.|-.|++|.-.- +
T Consensus 300 gG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLa--SYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 300 GG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLA--SYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred CC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceee--eecccceEEeccccccCCCCCC
Confidence 87 999999999875322 1222 23356999999999999998 78899999995321 2
Q ss_pred -----ceEE-EecCCCcc--eEEEE-ECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 413 -----AKVS-TLTGHSLR--VLYLA-TSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 413 -----~~~~-~l~~h~~~--V~~l~-~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
..+. .++||... |.++- |-|..+|+++|+.-|.|.||+-.+++....+.
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh
Confidence 1222 26788644 66665 57888999999999999999988877654433
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-15 Score=141.30 Aligned_cols=284 Identities=17% Similarity=0.229 Sum_probs=214.0
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CC
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGT-QC 241 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~-~~ 241 (475)
+...++.|.|... .+++++.|..|.+||...++....+.-+|...|..-.|-| +...+++++.||.|++=.+. ++
T Consensus 141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~ 220 (559)
T KOG1334|consen 141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG 220 (559)
T ss_pred CCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc
Confidence 3456788888864 4555566889999999999988888778999999889988 45789999999999987754 33
Q ss_pred ee--eEEecCCCCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCc--cEEEecCccC---CEEEEEEcCC-CCEEEEE
Q 011916 242 KR--VRTFGGHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSD--YICKLAGHKS---EVCGLKWSHD-DRELASG 310 (475)
Q Consensus 242 ~~--~~~~~~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~---~V~~l~~s~~-~~~lasg 310 (475)
.+ ...+..|.+.|..++. ++..|.+++.|+.+...|++.... .......+.. ....|+..|. ..++|+|
T Consensus 221 ~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVg 300 (559)
T KOG1334|consen 221 YVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVG 300 (559)
T ss_pred ceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccC
Confidence 33 3445679999998887 468999999999999999985432 2222333333 5678888884 4599999
Q ss_pred eCCCcEEEEECCCCce------eEEEe------ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--------
Q 011916 311 GNDNQLLVWNQHSQQP------TLRLT------EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-------- 370 (475)
Q Consensus 311 ~~Dg~I~iwd~~~~~~------~~~~~------~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-------- 370 (475)
+.|-.+++||.+.-.. +.++. .....|++++|+.++.-|+++- .|-.|++++-..+.
T Consensus 301 G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY---nDe~IYLF~~~~~~G~~p~~~s 377 (559)
T KOG1334|consen 301 GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY---NDEDIYLFNKSMGDGSEPDPSS 377 (559)
T ss_pred ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee---cccceEEeccccccCCCCCCCc
Confidence 9999999999874321 22222 2345689999998888888876 69999999543221
Q ss_pred ----eeee-ec-C--CCCeeEEEE-cCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 371 ----QLNS-VD-T--GSQVCNLAW-SKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 371 ----~~~~-~~-~--~~~v~~l~~-s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
.+.. ++ | ...|..+-| -|...++++ |+.=|.|.||+-.+++.+..+++....|+||.=+|--..||+++
T Consensus 378 ~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS--GSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG 455 (559)
T KOG1334|consen 378 PREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS--GSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG 455 (559)
T ss_pred chhhccchhhcccccccccceeeeccCccceEEe--cCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC
Confidence 1122 11 1 123555554 567778877 98899999999999999999988777999999999999999999
Q ss_pred CCCCEEEEecCCCC
Q 011916 442 GDETLRFWNVFPSL 455 (475)
Q Consensus 442 ~Dg~I~iW~~~~~~ 455 (475)
-|..|+||--...+
T Consensus 456 id~DVKIWTP~~~e 469 (559)
T KOG1334|consen 456 IDHDVKIWTPLTAE 469 (559)
T ss_pred CccceeeecCCccc
Confidence 99999999874433
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-14 Score=146.30 Aligned_cols=236 Identities=20% Similarity=0.364 Sum_probs=172.5
Q ss_pred ceeEEecCCC----CEEEEEcCCeEEEEECCCC--cEEEEee----C-----CCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 170 YLNLVDWSSQ----NVLAVGLGTCVYLWTASNS--KVTRLCD----L-----GPGDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 170 ~v~~l~ws~~----~~la~~~~~~V~lw~~~~~--~~~~~~~----~-----~~~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
+|..+..-.+ -+++++.||.|+||+-.-. +..++.. + +..+.=.-+.|.....+|++++.-..|+
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence 4555555432 4788888999999975322 2222221 0 1112224567888666666666678999
Q ss_pred EEECCCCeeeEEec-CCCCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCc--cEEEecCccCC--EEEEEEcCCCC-
Q 011916 235 VWDGTQCKRVRTFG-GHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSD--YICKLAGHKSE--VCGLKWSHDDR- 305 (475)
Q Consensus 235 iwd~~~~~~~~~~~-~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~--V~~l~~s~~~~- 305 (475)
|||....+++..+. +....|++++- +|+++++|..||.|++||.+.... .+...+.|+.. |..+.+.+.|-
T Consensus 1191 IWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~ 1270 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLG 1270 (1387)
T ss_pred EEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCc
Confidence 99999888887776 45557888876 479999999999999999986543 67778889887 99999988665
Q ss_pred EEEEEeCCCcEEEEECCCCcee--EEEeccc--c-ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----
Q 011916 306 ELASGGNDNQLLVWNQHSQQPT--LRLTEHT--A-AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---- 376 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~~--~~~~~h~--~-~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---- 376 (475)
.|++|+.||.|++||++..... ..+..|. + ..+++..+++.. ++++|+ . +.|+||++. |+.+..+.
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hap-iiAsGs--~-q~ikIy~~~-G~~l~~~k~n~~ 1345 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAP-IIASGS--A-QLIKIYSLS-GEQLNIIKYNPG 1345 (1387)
T ss_pred ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCC-eeeecC--c-ceEEEEecC-hhhhcccccCcc
Confidence 5999999999999999974221 1222232 3 589999999988 888875 4 999999985 44444332
Q ss_pred ----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011916 377 ----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 377 ----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
..+.+.+++|+|..-.+++ |+.|..|.||.....
T Consensus 1346 F~~q~~gs~scL~FHP~~~llAa--G~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1346 FMGQRIGSVSCLAFHPHRLLLAA--GSADSTVSIYSCEKP 1383 (1387)
T ss_pred cccCcCCCcceeeecchhHhhhh--ccCCceEEEeecCCc
Confidence 2346799999999888888 999999999987654
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.6e-14 Score=136.55 Aligned_cols=257 Identities=18% Similarity=0.307 Sum_probs=180.9
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEE-eeC--CCCCcEEEEEE-----cCCCCEEEEEeCCCeEEEEECCCCeeeEEec---
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRL-CDL--GPGDSVCSVQW-----TREGSYISVGTNLGQVQVWDGTQCKRVRTFG--- 248 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~-~~~--~~~~~V~~v~~-----spdg~~la~g~~dg~v~iwd~~~~~~~~~~~--- 248 (475)
..++...+..+++|+...+..... +.. -.....+|-+| .+++--|.+|-.-|.|++.|....+..+.+.
T Consensus 136 d~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r 215 (636)
T KOG2394|consen 136 DRLCFNVGRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEER 215 (636)
T ss_pred CEEEEecCCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchhhHHHHhhhhcc
Confidence 466666778899998875322111 000 01122233344 3467778899999999999976533322222
Q ss_pred -CCCCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEE--cCCCCEEEEEeCCCcEEEEECC
Q 011916 249 -GHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKW--SHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 249 -~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
-.+..|+|+.| +...++++-.+|.+.+||... ....+...| .+++..++.....+. .
T Consensus 216 ~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-----------~~~~t~p~~~~~k~~~~f~i~t~ksk------~ 278 (636)
T KOG2394|consen 216 LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-----------VCGATAPSYQALKDGDQFAILTSKSK------K 278 (636)
T ss_pred cccccceEEEEEEeCCCceEEEEEecCceEEeeccc-----------cccCCCCcccccCCCCeeEEeeeecc------c
Confidence 23478999999 458888899999999998731 111222222 235555554332111 1
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
+..++..+.-..+.|...+|+|||++|++++ .||.++|||..+.+++...+ --+...|++|+|||++|++ |.+|
T Consensus 279 ~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt--GGED 353 (636)
T KOG2394|consen 279 TRNPVARWHIGEGSINEFAFSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT--GGED 353 (636)
T ss_pred cCCccceeEeccccccceeEcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe--cCCc
Confidence 2245655555667899999999999887765 89999999999887766553 3467899999999999999 9999
Q ss_pred CeEEEEECCCCceEEEecCCCcceEEEEECC-------------------------------C----C------------
Q 011916 402 NQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-------------------------------D----G------------ 434 (475)
Q Consensus 402 g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-------------------------------d----g------------ 434 (475)
.-|.||.+...+.++.-++|...|..++|.| + +
T Consensus 354 DLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v 433 (636)
T KOG2394|consen 354 DLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSV 433 (636)
T ss_pred ceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccce
Confidence 9999999999999999999999999999972 0 1
Q ss_pred -CEEEEEeCCCCEEEEecCCCCCCC
Q 011916 435 -QTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 435 -~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
-.|.+.+.|-.+.+||+......+
T Consensus 434 ~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 434 TYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred EEEeecccccceEEEEecchhhccc
Confidence 157788899999999997655443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.6e-13 Score=144.13 Aligned_cols=259 Identities=17% Similarity=0.250 Sum_probs=176.9
Q ss_pred EECCCCcEEEEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-------eeeEEecCCCCceEEEEe--CCC
Q 011916 193 WTASNSKVTRLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQC-------KRVRTFGGHQTRAGVLAW--NSR 262 (475)
Q Consensus 193 w~~~~~~~~~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~~-------~~~~~~~~h~~~v~~l~~--~~~ 262 (475)
|+...--+.++. +|...|..++.++. +.++++|+.||+|++|+...- +...++.-...++.++.. +++
T Consensus 1034 W~p~G~lVAhL~--Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~ 1111 (1431)
T KOG1240|consen 1034 WNPRGILVAHLH--EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD 1111 (1431)
T ss_pred CCccceEeehhh--hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC
Confidence 555443333333 67778888888774 499999999999999997531 233334334556666655 789
Q ss_pred EEEEEeCCCcEEEEECCCCC--c----cEEEecCcc-CCEEE-EEEcC-CCC-EEEEEeCCCcEEEEECCCCceeEEEe-
Q 011916 263 ILSSGSRDRNILQHDLRVSS--D----YICKLAGHK-SEVCG-LKWSH-DDR-ELASGGNDNQLLVWNQHSQQPTLRLT- 331 (475)
Q Consensus 263 ~l~sgs~dg~I~iwd~~~~~--~----~~~~~~~h~-~~V~~-l~~s~-~~~-~lasg~~Dg~I~iwd~~~~~~~~~~~- 331 (475)
.+|.++.||.|.+.++.... + .......+. +.+.+ .++.. .+. .|+.+..-+.|..||++.......++
T Consensus 1112 ~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1112 QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence 99999999999999997411 1 111112222 22333 33332 333 78888888999999999876655443
Q ss_pred -ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--CCeeEEEEcCCCC---eEEEEEec-CCCeE
Q 011916 332 -EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVN---ELVSTHGY-SQNQI 404 (475)
Q Consensus 332 -~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~~~---~l~~~~g~-~dg~I 404 (475)
...+.|++++.+|.+.+++. |+..|.+.+||++-+.++....++ .++..+..+|-.. ..+++ |. ..+.|
T Consensus 1192 ~~~hG~vTSi~idp~~~Wlvi---Gts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~-~~~~~nev 1267 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVI---GTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA-GSSSNNEV 1267 (1431)
T ss_pred CccccceeEEEecCCceEEEE---ecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe-cccCCCce
Confidence 35688999999999995555 569999999999999998888654 5677777766444 44443 55 78899
Q ss_pred EEEECCCCceEEEecCC-------------------CcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 405 MVWKYPSMAKVSTLTGH-------------------SLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 405 ~iwd~~~~~~~~~l~~h-------------------~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
.+|++.++.....+-.. .-......+..-+.++.+|+.|..||.||.......
T Consensus 1268 s~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1268 STWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred eeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 99999988665544322 111222333344568999999999999999876655
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.2e-12 Score=122.87 Aligned_cols=264 Identities=14% Similarity=0.168 Sum_probs=179.5
Q ss_pred CeEEEEEC--CCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCC--e--eeEEecCCCCceEEE
Q 011916 188 TCVYLWTA--SNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN----LGQVQVWDGTQC--K--RVRTFGGHQTRAGVL 257 (475)
Q Consensus 188 ~~V~lw~~--~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~----dg~v~iwd~~~~--~--~~~~~~~h~~~v~~l 257 (475)
+.|++|++ +++++..............++++|++++|.+... +|.|..|++... + .+............+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 68888887 6666655443334566778999999999999877 478999987653 3 333333233444556
Q ss_pred Ee--CCCEEEEEe-CCCcEEEEECCCCCccEEE--ec-----------CccCCEEEEEEcCCCCEEEEEeC-CCcEEEEE
Q 011916 258 AW--NSRILSSGS-RDRNILQHDLRVSSDYICK--LA-----------GHKSEVCGLKWSHDDRELASGGN-DNQLLVWN 320 (475)
Q Consensus 258 ~~--~~~~l~sgs-~dg~I~iwd~~~~~~~~~~--~~-----------~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd 320 (475)
+. ++++|+++. .+|.|.++++...+..... .. .......++.++|+++++++... ...|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 66 567777776 5899999999865543332 11 12345789999999998888653 34799999
Q ss_pred CCCCc--ee--EEEe-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC--CCc--eeeeecC-------CCCeeEE
Q 011916 321 QHSQQ--PT--LRLT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS--NGH--QLNSVDT-------GSQVCNL 384 (475)
Q Consensus 321 ~~~~~--~~--~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~--~~~--~~~~~~~-------~~~v~~l 384 (475)
+.... .. ..+. ......+.++|+|++++++++.. .++.|.++++. ++. .+..+.. ......+
T Consensus 173 ~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp E-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred EeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 97654 21 1222 24456789999999999988876 89999999988 442 2222221 1257889
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCC--C--ceEEEecCCCcceEEEEECCCCCEEEEEeC-CCCEEEEecCCC
Q 011916 385 AWSKNVNELVSTHGYSQNQIMVWKYPS--M--AKVSTLTGHSLRVLYLATSPDGQTIVTGAG-DETLRFWNVFPS 454 (475)
Q Consensus 385 ~~s~~~~~l~~~~g~~dg~I~iwd~~~--~--~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~~ 454 (475)
.++|+|++|+++ ....+.|.+|++.. + +.+..+.........++++|+|++|+++.. ++.|.+|+++..
T Consensus 251 ~ispdg~~lyvs-nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 251 AISPDGRFLYVS-NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EE-TTSSEEEEE-ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETT
T ss_pred EEecCCCEEEEE-eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCC
Confidence 999999999986 44688999999932 2 334444433445799999999999998874 678999998643
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-13 Score=134.67 Aligned_cols=219 Identities=16% Similarity=0.127 Sum_probs=153.6
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeC---CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR---DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.|.++|.. +...+.+..|...+.+.+| +++.|+..+. +..|.+||+.. +. ...+..+.+.+....|+|||+.
T Consensus 183 ~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-g~-~~~l~~~~g~~~~~~~SPDG~~ 259 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-GQ-RELVGNFPGMTFAPRFSPDGRK 259 (435)
T ss_pred EEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-Cc-EEEeecCCCcccCcEECCCCCE
Confidence 78888875 4445566678888999999 4677776653 46899999974 32 2345556677888999999998
Q ss_pred EEE-EeCCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE
Q 011916 307 LAS-GGNDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN 383 (475)
Q Consensus 307 las-g~~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~ 383 (475)
|+. .+.++ .|++||+.++.. ..+..+........|+|||+.++++........|++||+.+++..........+..
T Consensus 260 la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~ 338 (435)
T PRK05137 260 VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYST 338 (435)
T ss_pred EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccC
Confidence 764 45555 488889987764 45666666677899999999888765322234799999887765544444556777
Q ss_pred EEEcCCCCeEEEEEecC-CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC------CCEEEEecCCCCC
Q 011916 384 LAWSKNVNELVSTHGYS-QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD------ETLRFWNVFPSLK 456 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D------g~I~iW~~~~~~~ 456 (475)
..|+|+|+.|+.+.... ...|.+||...+.. ..+. ....+..+.|+|||+.|+..+.+ ..|+++++..+..
T Consensus 339 ~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 339 PVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred eEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 89999999998854222 24688899765443 3333 22346788999999988776543 2577778766544
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.2e-13 Score=134.94 Aligned_cols=218 Identities=20% Similarity=0.170 Sum_probs=150.3
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCC---CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRD---RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
..|.+||... ...+.+..+...+.+.+| +++.|+..+.+ ..|.+||+.. +. ...+..+.+...+..|+|||+
T Consensus 184 ~~l~i~D~~g-~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-g~-~~~l~~~~g~~~~~~~SpDG~ 260 (433)
T PRK04922 184 YALQVADSDG-YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-GQ-RELVASFRGINGAPSFSPDGR 260 (433)
T ss_pred EEEEEECCCC-CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC-CC-EEEeccCCCCccCceECCCCC
Confidence 3688999754 444556667778888999 46777777633 4699999973 32 233344455566889999999
Q ss_pred EEEE-EeCCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC--eEEEEECCCCceeeeecCCCC
Q 011916 306 ELAS-GGNDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR--CIRFWNTSNGHQLNSVDTGSQ 380 (475)
Q Consensus 306 ~las-g~~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd~~~~~~~~~~~~~~~ 380 (475)
.|+. .+.+| .|++||+.+++. ..+..+......++|+|||+.++++.. .++ .|+++|+.+++.......+..
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd--~~g~~~iy~~dl~~g~~~~lt~~g~~ 337 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSD--RGGRPQIYRVAASGGSAERLTFQGNY 337 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEEC--CCCCceEEEEECCCCCeEEeecCCCC
Confidence 7764 44555 699999988764 445555555678999999998887753 333 477788877765444334445
Q ss_pred eeEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC---CCEEEEecCCCCC
Q 011916 381 VCNLAWSKNVNELVSTHGYS-QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD---ETLRFWNVFPSLK 456 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g~I~iW~~~~~~~ 456 (475)
....+|+|+|+.|+.+.... ...|.+||+.+++.. .+. +........|+|||++|+..+.+ +.|.++++.....
T Consensus 338 ~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~ 415 (433)
T PRK04922 338 NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVR 415 (433)
T ss_pred ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 56789999999998864321 236999999877654 443 22345567999999988876653 3577888865443
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.8e-13 Score=121.04 Aligned_cols=143 Identities=14% Similarity=0.311 Sum_probs=108.7
Q ss_pred CcEEEEECCCCCccEEEecC-ccCCEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCceeEEEeccccceeEEEECCCCC
Q 011916 271 RNILQHDLRVSSDYICKLAG-HKSEVCGLKWSHDDRELASG--GNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~s~~~~~lasg--~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~ 347 (475)
+...+|.++........+.- ..+.|.+++|+|+|+.||+. ..++.|.+||++ ++.+..+. ...+..|.|+|+|+
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~ 113 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGR 113 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCC
Confidence 34566666544444444433 34579999999999987654 456799999997 55666653 56778999999999
Q ss_pred cEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec----CCCeEEEEECCCCceEEEe
Q 011916 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY----SQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 348 ~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~----~dg~I~iwd~~~~~~~~~l 418 (475)
+++++|.|...|.|.+||+++.+.+...++.. +..++|+|+|+++++++.. .|+.++||++. |+.+...
T Consensus 114 ~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 114 FLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 88888766667899999999999988887654 7899999999999997443 47889999984 5555443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-13 Score=124.56 Aligned_cols=204 Identities=21% Similarity=0.305 Sum_probs=164.4
Q ss_pred ecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC--ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 247 FGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS--DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 247 ~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
+.....+|+|.+|+ ...++.+..+..|.||...... +...++..|...|++++|+|..+.|++++.|..-++|...
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 33345789999996 5789999999999999987544 4667889999999999999999999999999999999984
Q ss_pred C---CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee-----eeecCCCCeeEEEEcCCCCeEE
Q 011916 323 S---QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL-----NSVDTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 323 ~---~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~-----~~~~~~~~v~~l~~s~~~~~l~ 394 (475)
. .++...+..+..+++++.|+|.+. .+++|+ ..+.|.+|-++...-- ......+.|.++.|+|++-.|+
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgS--gar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKEN-KFAVGS--GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCc-eEEecc--CccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 3 356667778999999999999988 555554 6788888877654332 1223567899999999998888
Q ss_pred EEEecCCCeEEEEEC------------------CCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 395 STHGYSQNQIMVWKY------------------PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~------------------~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+ |+.|+..+||.. +-++.+.++....+.|..+.|+|+|..|+-.+.|+++.+=|-....
T Consensus 163 a--Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 163 A--GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred c--cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 8 999999999863 1234445554566789999999999999999999999998887665
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-12 Score=129.07 Aligned_cols=220 Identities=16% Similarity=0.133 Sum_probs=149.1
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEe---CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGS---RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.|.+||.+.... +.+..+...+...+|+ |+.|+..+ .+..|.+||+.. +. ...+....+.+..+.|+|||+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-G~-~~~l~~~~~~~~~~~~SPDG~~ 256 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GA-VRQVASFPRHNGAPAFSPDGSK 256 (429)
T ss_pred eEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CC-eEEccCCCCCcCCeEECCCCCE
Confidence 688898775543 3344566788889994 67776554 245789999873 32 2233333344567899999998
Q ss_pred EEEE-eCCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC--eEEEEECCCCceeeeecCCCCe
Q 011916 307 LASG-GNDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR--CIRFWNTSNGHQLNSVDTGSQV 381 (475)
Q Consensus 307 lasg-~~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd~~~~~~~~~~~~~~~v 381 (475)
|+.. +.+| .|++||+.+++.. .+..+...+....|+|+|+.|+++.. .++ .|+++|+.+++...........
T Consensus 257 La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~--~~g~~~Iy~~d~~~g~~~~lt~~~~~~ 333 (429)
T PRK03629 257 LAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSD--QAGRPQVYKVNINGGAPQRITWEGSQN 333 (429)
T ss_pred EEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeC--CCCCceEEEEECCCCCeEEeecCCCCc
Confidence 8865 3344 5999999887654 44445566788999999998877653 333 5666688777654443344556
Q ss_pred eEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCC---EEEEecCCCCCC
Q 011916 382 CNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDET---LRFWNVFPSLKA 457 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~---I~iW~~~~~~~~ 457 (475)
....|+|+|+.|+.+... ....|++||+.+++.. .+... .......|+|||++|+.++.++. +.+++++.....
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~ 411 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKA 411 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeE
Confidence 678999999999885332 1246889999887643 34322 22346789999999999988765 677788655544
Q ss_pred CC
Q 011916 458 PA 459 (475)
Q Consensus 458 ~~ 459 (475)
..
T Consensus 412 ~l 413 (429)
T PRK03629 412 RL 413 (429)
T ss_pred EC
Confidence 33
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-13 Score=126.93 Aligned_cols=216 Identities=15% Similarity=0.218 Sum_probs=170.6
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCc--EEEEeeCCCCCcEEEEEEcCCCC-EEEEEeCC--CeEEEEECCCCeeeEEec
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSK--VTRLCDLGPGDSVCSVQWTREGS-YISVGTNL--GQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~--~~~~~~~~~~~~V~~v~~spdg~-~la~g~~d--g~v~iwd~~~~~~~~~~~ 248 (475)
+.-..+.++++-.+|.+.+|....+. -..+..+.....+..+.-++... .+|+|+.. ..+.|||++..+++.+-+
T Consensus 111 l~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aK 190 (412)
T KOG3881|consen 111 LKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAK 190 (412)
T ss_pred hhhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeecc
Confidence 33445678888889999999998443 11222223346677777777554 55668888 789999999887665544
Q ss_pred CCC---------CceEEEEe-C---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCc
Q 011916 249 GHQ---------TRAGVLAW-N---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQ 315 (475)
Q Consensus 249 ~h~---------~~v~~l~~-~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~ 315 (475)
.-. -.++++.| . ...|++++.-+.+++||.+....++..+..-...|.++..-|+++++++|..-+.
T Consensus 191 NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~ 270 (412)
T KOG3881|consen 191 NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQ 270 (412)
T ss_pred CCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccch
Confidence 221 13445666 2 4789999999999999999888899999888999999999999999999999999
Q ss_pred EEEEECCCCceeEE-EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCe
Q 011916 316 LLVWNQHSQQPTLR-LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNE 392 (475)
Q Consensus 316 I~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~ 392 (475)
+..+|++.++.... +.+..+.|.+|..+|.++ +++++| -|+.++|+|+.+.+++...-..+.++++.+.++-+.
T Consensus 271 l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~-~las~G--LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~n~ 345 (412)
T KOG3881|consen 271 LAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHP-VLASCG--LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDVNI 345 (412)
T ss_pred hheecccCceeeccccCCccCCcceEEEcCCCc-eEEeec--cceeEEEeecccchhhhhhhhhccccEEEecCCccc
Confidence 99999999988766 788899999999999988 555555 899999999999888888878888888888765443
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=138.51 Aligned_cols=229 Identities=11% Similarity=0.187 Sum_probs=188.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEec
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
.-..+.++.+|++|+.|+..|.|-.+|..++++...+. -...|..+.| +...+++......+.|||-. +..+..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~--GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQKKYVYVYDNN--GTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhhhceEEEecCC--CcEEeehh
Confidence 34578899999999999999999999999998887765 2356788888 45555555667889999975 55666666
Q ss_pred CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 290 GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 290 ~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.| ..|..+.|-|..-+|++++..|.+..-|+.+|+.+..+....+.+..++-+|.+. ++-.|. ..|+|.+|.....
T Consensus 208 ~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~Gh--snGtVSlWSP~sk 283 (545)
T KOG1272|consen 208 RH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VIHLGH--SNGTVSLWSPNSK 283 (545)
T ss_pred hc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccc-eEEEcC--CCceEEecCCCCc
Confidence 55 4588999999988999999999999999999999998888889999999999877 677765 8999999999888
Q ss_pred ceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEE
Q 011916 370 HQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF 448 (475)
Q Consensus 370 ~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 448 (475)
+++..+ .|.++|.++++.++|.++++ .+.|..++|||++....+.++.. ......+++|..| .|| ++....|.|
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaT--tG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA-~~~G~~v~i 358 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMAT--TGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLA-LSYGDHVQI 358 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEee--cccccceeEeeeccccccceeec-CCCcccccccccc-cee-eecCCeeee
Confidence 877665 68899999999999999999 66899999999999887776654 3456778888776 344 445557999
Q ss_pred Eec
Q 011916 449 WNV 451 (475)
Q Consensus 449 W~~ 451 (475)
|.=
T Consensus 359 w~d 361 (545)
T KOG1272|consen 359 WKD 361 (545)
T ss_pred ehh
Confidence 964
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-13 Score=123.75 Aligned_cols=277 Identities=19% Similarity=0.271 Sum_probs=198.7
Q ss_pred EecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEecCCC
Q 011916 174 VDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQVWDGTQCKRVRTFGGHQ 251 (475)
Q Consensus 174 l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~iwd~~~~~~~~~~~~h~ 251 (475)
.++||+ +.+|+..+-.+.|-|.++-++.+++.. -+.|..+.|..|..+++++ ..++.|++|++...+-...+....
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c--ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ 91 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC--LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQ 91 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH--HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCC
Confidence 567886 788888888999999999887777642 4678889999988766654 568899999999988888888888
Q ss_pred CceEEEEeC--C-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC----------------
Q 011916 252 TRAGVLAWN--S-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN---------------- 312 (475)
Q Consensus 252 ~~v~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~---------------- 312 (475)
..+..++|+ | ++|.+...+-.|.+|.+.+..... +..-+..+.+++|++||++.+..+.
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ 169 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI 169 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence 999999995 5 678888899999999997443322 2223344678888888888776653
Q ss_pred --------------------CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee
Q 011916 313 --------------------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL 372 (475)
Q Consensus 313 --------------------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~ 372 (475)
++.+.+||.--.-.+..+ ...-.+..++|+|.++ +++.|+ .|+.+++.|--+.+..
T Consensus 170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~q-flavGs--yD~~lrvlnh~tWk~f 245 (447)
T KOG4497|consen 170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQ-FLAVGS--YDQMLRVLNHFTWKPF 245 (447)
T ss_pred HHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccc-eEEeec--cchhhhhhceeeeeeh
Confidence 123344443211111111 2235789999999888 556654 9999888764322110
Q ss_pred e------------------------------------------------------------eec-------CCCCeeEEE
Q 011916 373 N------------------------------------------------------------SVD-------TGSQVCNLA 385 (475)
Q Consensus 373 ~------------------------------------------------------------~~~-------~~~~v~~l~ 385 (475)
. .++ ....+.-++
T Consensus 246 ~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 246 GEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred hhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 0 000 012366789
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
|++|..++++....--+.+.+||++..+.-..+. ...+|....|.|....|+.+.+...+++|..........
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V~v 398 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV 398 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEec
Confidence 9999999998665566889999998877655543 456799999999999999888888899999876544443
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-12 Score=117.23 Aligned_cols=278 Identities=15% Similarity=0.204 Sum_probs=185.4
Q ss_pred eeEEecCCC--CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEE
Q 011916 171 LNLVDWSSQ--NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.-+.|..+ .++.+.. ++.|.+|++...+....++ +....+.+++|+|||+.|. +...+-.|.||.+.+.+....
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId-eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID-EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEec-cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 344788876 3444443 7899999999998887777 4467899999999996554 556688999999987665432
Q ss_pred ecCCCCceEEEEe--CCCEEEEEeC------------------------------------CCcEEEEECCCCCccEEEe
Q 011916 247 FGGHQTRAGVLAW--NSRILSSGSR------------------------------------DRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 247 ~~~h~~~v~~l~~--~~~~l~sgs~------------------------------------dg~I~iwd~~~~~~~~~~~ 288 (475)
.-....+..++| +|++.+..++ +..+.+||--...+.. .
T Consensus 130 -~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~--a 206 (447)
T KOG4497|consen 130 -PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY--A 206 (447)
T ss_pred -cccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee--e
Confidence 112223344444 3454444332 2345566643221111 1
Q ss_pred cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-------------------------------------------
Q 011916 289 AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ------------------------------------------- 325 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~------------------------------------------- 325 (475)
..-.-.+..++|+|.+++|++|+.|+.++|.+--+.+
T Consensus 207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a 286 (447)
T KOG4497|consen 207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA 286 (447)
T ss_pred eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence 1122468899999999999999999998875421100
Q ss_pred -----------------eeEEEe------ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCee
Q 011916 326 -----------------PTLRLT------EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVC 382 (475)
Q Consensus 326 -----------------~~~~~~------~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~ 382 (475)
.++.++ ...-.+.-++|++|..++++ -....-+.+-+||++..+....+....+|.
T Consensus 287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aT-rnd~~PnalW~Wdlq~l~l~avLiQk~pir 365 (447)
T KOG4497|consen 287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAAT-RNDKYPNALWLWDLQNLKLHAVLIQKHPIR 365 (447)
T ss_pred CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEee-ecCCCCceEEEEechhhhhhhhhhhcccee
Confidence 000111 12234667899999885444 322345779999999888877777889999
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
...|+|....|++.+ ....+++|.... .......+..-.|..++|..+|..++..+.|... +=-+.+....
T Consensus 366 af~WdP~~prL~vct--g~srLY~W~psg-~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDafc-~a~ve~e~es 436 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCT--GKSRLYFWAPSG-PRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAFC-VAIVEDEDES 436 (447)
T ss_pred EEEeCCCCceEEEEc--CCceEEEEcCCC-ceEEecCCCCceeeeEEecCCCcEEEEEcCCceE-EEEecCCccc
Confidence 999999999999844 456799998654 3333344445779999999999999999998643 2244444333
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-12 Score=123.49 Aligned_cols=296 Identities=13% Similarity=0.146 Sum_probs=210.0
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-----eC-----CCeEEEEECC
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-----TN-----LGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-----~~-----dg~v~iwd~~ 239 (475)
++..++|++ .++|.+.+..|.|++..++..+... ... .+.++.|+|.|.+|.+= .. .-.+++|+++
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~--~~~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCV--ELK-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEe--ccc-eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 566777776 7999999999999999998733333 223 89999999999998872 11 2347899999
Q ss_pred CCeeeEEecCCCCceEEEEeCC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC--CEEEE-----Ee
Q 011916 240 QCKRVRTFGGHQTRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD--RELAS-----GG 311 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~--~~las-----g~ 311 (475)
++.....+......-++..|.. ..|++--..+.+++|++.........+ |...|..+.+||.+ ..+|+ +|
T Consensus 114 t~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kG 191 (566)
T KOG2315|consen 114 TGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKG 191 (566)
T ss_pred cceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccCCCC
Confidence 9655555543222226777753 444444456789999998533333333 57789999999963 35554 34
Q ss_pred CCCcEEEEECCCCceeEEE---eccccceeEEEECCCCCcEEEEecCCC---------CCeEEEEECCCCceeeeecCCC
Q 011916 312 NDNQLLVWNQHSQQPTLRL---TEHTAAVKAIAWSPHQSSLLASGGGTA---------DRCIRFWNTSNGHQLNSVDTGS 379 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~ll~sg~Gs~---------d~~I~iwd~~~~~~~~~~~~~~ 379 (475)
.-..|+||..........+ .-....-..+.|++-|..||+...-.- ..++++.++....+...+...+
T Consensus 192 aPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G 271 (566)
T KOG2315|consen 192 APASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG 271 (566)
T ss_pred CCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC
Confidence 5568999988733221111 112333456889988887766543112 3578999998667777788899
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC---CCEEEEecCCCCC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD---ETLRFWNVFPSLK 456 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g~I~iW~~~~~~~ 456 (475)
+|.++.|++++++++++.|+.--.+.|||++ +..+..+ .+++-+++-|+|.|++|+.+|-+ |.|-|||+...++
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~ 348 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKL 348 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhh
Confidence 9999999999999999999999999999985 4555554 35667889999999999998765 7899999999777
Q ss_pred CCCcccCCc---cccccCccc
Q 011916 457 APALVKDTS---LWSLGRTHI 474 (475)
Q Consensus 457 ~~~~~~~~~---v~s~~~~~i 474 (475)
......... -|+.++++|
T Consensus 349 i~~~~a~~tt~~eW~PdGe~f 369 (566)
T KOG2315|consen 349 IAKFKAANTTVFEWSPDGEYF 369 (566)
T ss_pred ccccccCCceEEEEcCCCcEE
Confidence 666543332 377776654
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.1e-13 Score=125.57 Aligned_cols=245 Identities=12% Similarity=0.157 Sum_probs=183.3
Q ss_pred CCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeeeEEe------cCCCCceEEEEeCCCEEEEEeCCCcEEEEECC
Q 011916 208 PGDSVCSVQWTREGS--YISVGTNLGQVQVWDGTQCKRVRTF------GGHQTRAGVLAWNSRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 208 ~~~~V~~v~~spdg~--~la~g~~dg~v~iwd~~~~~~~~~~------~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~ 279 (475)
....|.+++|.-+++ .|...+.+-.+..+.+........+ ......|..+......|++|-.+|.+.+|..+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEecc
Confidence 346788888876553 4444446667777777665554433 34566777777777889999999999999987
Q ss_pred CCC---ccEEEecCccCCEEEEEEcC-CCCEEEEEeCC--CcEEEEECCCCceeEEEecc---------ccceeEEEECC
Q 011916 280 VSS---DYICKLAGHKSEVCGLKWSH-DDRELASGGND--NQLLVWNQHSQQPTLRLTEH---------TAAVKAIAWSP 344 (475)
Q Consensus 280 ~~~---~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~D--g~I~iwd~~~~~~~~~~~~h---------~~~v~~l~~sp 344 (475)
... .....+..+ ..+..+.-++ +...+|+||.. +.+.|||+...+.++.-+.- .-.++++.|-+
T Consensus 134 ~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLE 212 (412)
T ss_pred CCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecC
Confidence 332 223333333 4466666666 44567779988 88999999988665543321 23467888877
Q ss_pred C--CCcEEEEecCCCCCeEEEEECCCCc-eeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-ec
Q 011916 345 H--QSSLLASGGGTADRCIRFWNTSNGH-QLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST-LT 419 (475)
Q Consensus 345 ~--~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~-l~ 419 (475)
. .. -++++. .-+.+++||++.++ ++..++ ....+.++...|.++.+++ |...+++..||.+.+..... +.
T Consensus 213 g~~~~-~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~--gn~~g~l~~FD~r~~kl~g~~~k 287 (412)
T KOG3881|consen 213 GSPNY-KFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYT--GNTKGQLAKFDLRGGKLLGCGLK 287 (412)
T ss_pred CCCCc-eEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEE--ecccchhheecccCceeeccccC
Confidence 6 44 455543 79999999998764 566675 3578999999999999999 88999999999999988776 88
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 420 GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 420 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
+-.+.|.++..+|.+++|++++-|..|||+|+.+.....
T Consensus 288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~ 326 (412)
T KOG3881|consen 288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLH 326 (412)
T ss_pred CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhh
Confidence 899999999999999999999999999999999855443
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.9e-12 Score=122.84 Aligned_cols=243 Identities=12% Similarity=0.148 Sum_probs=163.3
Q ss_pred EecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEecCC
Q 011916 174 VDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 174 l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~~~~~~~h 250 (475)
+.++++ .+++++.|+.|.++|+.+.+++..+.. .....++++++||++++++. ..+.+.|+|.++.+.++.+...
T Consensus 42 ~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~--G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~ 119 (369)
T PF02239_consen 42 LKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV--GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTG 119 (369)
T ss_dssp EE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE---SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--
T ss_pred EEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec--CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccc
Confidence 567775 366667799999999999999888864 45678999999999999876 4799999999999999887532
Q ss_pred -------CCceEEEEe--CCC-EEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE-eCCCcEEEE
Q 011916 251 -------QTRAGVLAW--NSR-ILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG-GNDNQLLVW 319 (475)
Q Consensus 251 -------~~~v~~l~~--~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg-~~Dg~I~iw 319 (475)
..++.++.. ... ++++.-..+.|.+.|......................|+|++++++.+ ..++.|-++
T Consensus 120 ~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 120 GMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred cccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEE
Confidence 346666654 234 555555668999989875444433444445567889999999987665 456688888
Q ss_pred ECCCCceeEEE-------------------------------------------------------eccccceeEEEECC
Q 011916 320 NQHSQQPTLRL-------------------------------------------------------TEHTAAVKAIAWSP 344 (475)
Q Consensus 320 d~~~~~~~~~~-------------------------------------------------------~~h~~~v~~l~~sp 344 (475)
|.++++.+..+ ...... .-+..+|
T Consensus 200 D~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP 278 (369)
T PF02239_consen 200 DTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP 278 (369)
T ss_dssp ETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T
T ss_pred eeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC
Confidence 88765433221 111111 3456789
Q ss_pred CCCcEEEE-ecCCCCCeEEEEECCCCceeeeecCCC--CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec
Q 011916 345 HQSSLLAS-GGGTADRCIRFWNTSNGHQLNSVDTGS--QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 345 ~~~~ll~s-g~Gs~d~~I~iwd~~~~~~~~~~~~~~--~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
+++++.+. ..+...+.|.++|.++.+.+..+.... .+..+.|+++|+++.++....++.|.+||..+.+.+..++
T Consensus 279 ~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 279 DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 99988886 112257899999999998888876443 4999999999999998767666799999999999998886
|
... |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-12 Score=128.25 Aligned_cols=235 Identities=14% Similarity=0.109 Sum_probs=154.7
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEecCCCCceEEEEe--CCC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSR 262 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~ 262 (475)
..|+++|........+. .+...+.+.+|+|||++|+.+..+ ..|++||+.+++.... ..+...+.+++| +++
T Consensus 170 ~~l~~~d~~g~~~~~l~--~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 170 YELQVADYDGANPQTIT--RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGS 246 (417)
T ss_pred ceEEEEcCCCCCCEEee--cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCC
Confidence 36899998766655555 455678899999999999988754 4799999988765433 334555666788 455
Q ss_pred EEE-EEeCCC--cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEeccccc
Q 011916 263 ILS-SGSRDR--NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N--QLLVWNQHSQQPTLRLTEHTAA 336 (475)
Q Consensus 263 ~l~-sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g--~I~iwd~~~~~~~~~~~~h~~~ 336 (475)
.|+ +.+.++ .|.+||+.. .....+..+........|+|||+.|+..+.. + .|+++|+.+++. ..+..+...
T Consensus 247 ~l~~~~~~~~~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~ 323 (417)
T TIGR02800 247 KLAVSLSKDGNPDIYVMDLDG--KQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY 323 (417)
T ss_pred EEEEEECCCCCccEEEEECCC--CCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC
Confidence 554 555554 588888863 2344455555555677999999988876543 2 688889887654 344445566
Q ss_pred eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC-CeEEEEECCCCceE
Q 011916 337 VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ-NQIMVWKYPSMAKV 415 (475)
Q Consensus 337 v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d-g~I~iwd~~~~~~~ 415 (475)
+..+.|+|+++.++++........|.+||+.++.... +..........|+|+++.|+.+..... ..+++.+. ++...
T Consensus 324 ~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~-~g~~~ 401 (417)
T TIGR02800 324 NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVST-DGRFR 401 (417)
T ss_pred ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEEC-CCcee
Confidence 7889999999988887531112379999998865433 322333456789999999988533221 24555554 34444
Q ss_pred EEecCCCcceEEEEE
Q 011916 416 STLTGHSLRVLYLAT 430 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~ 430 (475)
..+..+.+.+..++|
T Consensus 402 ~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 402 ARLPLGNGDVREPAW 416 (417)
T ss_pred eECCCCCCCcCCCCC
Confidence 555544445554444
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-14 Score=136.08 Aligned_cols=260 Identities=17% Similarity=0.246 Sum_probs=202.8
Q ss_pred eEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 172 NLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 172 ~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
..++++.+ .++.+|.-|.|-.+|..++++...+. -...|.++.|-.+.+++|++-. .-++||| ..|..++.++.
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD-~~GtElHClk~ 208 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQK-KYVYVYD-NNGTELHCLKR 208 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhhh-ceEEEec-CCCcEEeehhh
Confidence 34666654 68888889999999999998776653 4678999999999999988766 6799999 55666666664
Q ss_pred CCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 011916 250 HQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT 327 (475)
Q Consensus 250 h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~ 327 (475)
| ..|..+.|-+ -+|++++..|.+.--|+. .++.+..+..-.+.+..++-+|-+..+-+|...|+|.+|.....+++
T Consensus 209 ~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS-~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL 286 (545)
T KOG1272|consen 209 H-IRVARLEFLPYHFLLVAASEAGFLKYQDVS-TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL 286 (545)
T ss_pred c-CchhhhcccchhheeeecccCCceEEEeec-hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence 4 4677788854 567788899999999998 67777778878888999999998889999999999999999999999
Q ss_pred EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
..+..|.++|.+|++.++|.+++++| .|+.++|||+++...+.++........+++|..|- |++ + ....|.||
T Consensus 287 vKiLcH~g~V~siAv~~~G~YMaTtG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA~--~-~G~~v~iw 359 (545)
T KOG1272|consen 287 VKILCHRGPVSSIAVDRGGRYMATTG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LAL--S-YGDHVQIW 359 (545)
T ss_pred HHHHhcCCCcceEEECCCCcEEeecc---cccceeEeeeccccccceeecCCCccccccccccc-eee--e-cCCeeeee
Confidence 99999999999999999999888876 79999999999999888887777888899987654 333 2 34568899
Q ss_pred EC-CCCc--eEEEecCC--CcceEEEEECCCCCEEEEEeCCC
Q 011916 408 KY-PSMA--KVSTLTGH--SLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 408 d~-~~~~--~~~~l~~h--~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
.= -.+. .-..+-.| .+.|..+.|.|-...|-.|...|
T Consensus 360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence 52 2211 11111122 34788999988655555444433
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=129.11 Aligned_cols=191 Identities=18% Similarity=0.209 Sum_probs=145.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEec-
Q 011916 213 CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLA- 289 (475)
Q Consensus 213 ~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 289 (475)
.+++|+.+|..|++|+.||.++||+......+.....|...|.++.| ++.+|++-+.| ...||+.+.. ..+....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g-~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG-AALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC-chhhhcCC
Confidence 68999999999999999999999999998888888899999999999 57899999999 9999999844 4443333
Q ss_pred -CccCCEEEEEEcCCC-----CEEEEEeCCCcEEEEECCCCce-----eEEEeccccceeEEEECCCCCcEEEEecCCCC
Q 011916 290 -GHKSEVCGLKWSHDD-----RELASGGNDNQLLVWNQHSQQP-----TLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 290 -~h~~~V~~l~~s~~~-----~~lasg~~Dg~I~iwd~~~~~~-----~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
.-......+.|+.|+ ..++....-+.|..||+..... ..+.......|.+++.+++|++ ++.| +.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf-~AlG--T~d 302 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF-LALG--TMD 302 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE-EEEe--ccC
Confidence 223345667788776 2333344456677776653221 1222223457999999999994 5554 489
Q ss_pred CeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 359 RCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
|.|.|++..+.+++..+. |..-|+.+.|+|+.++++.+ +.+..+.|..+.
T Consensus 303 GsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv--Ss~~~~~v~~l~ 354 (398)
T KOG0771|consen 303 GSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV--SSDNEAAVTKLA 354 (398)
T ss_pred CcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc--ccCCceeEEEEe
Confidence 999999999998888774 67789999999999999984 456666666553
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-11 Score=126.59 Aligned_cols=236 Identities=15% Similarity=0.106 Sum_probs=155.5
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEecCCCCceEEEEe--CCCE
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRI 263 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~ 263 (475)
.|+++|.+.+....+. .+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.+....| +|+.
T Consensus 180 ~l~~~d~~g~~~~~l~--~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGARAVTLL--QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCCceEEe--cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCE
Confidence 5888898877655554 456788999999999999887643 368999998876543 2323344456777 4666
Q ss_pred EE-EEeCCC--cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCceeEEEeccccce
Q 011916 264 LS-SGSRDR--NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-D--NQLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 264 l~-sgs~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-D--g~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
|+ +...+| .|.++|+.. + ....+..+........|+|||+.|+..+. + ..|+++|+.+++... +.......
T Consensus 257 la~~~~~~g~~~Iy~~d~~~-~-~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~ 333 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLAS-R-QLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYN 333 (430)
T ss_pred EEEEEccCCCceEEEEECCC-C-CeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCc
Confidence 65 555555 577788873 2 33445556666777899999998877654 2 368888888776432 22222333
Q ss_pred eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEE
Q 011916 338 KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVS 416 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~ 416 (475)
....|+|+++.++.+........|.+||+.+++..... .........|+|+|+.++.+... ....|++++... ....
T Consensus 334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~ 411 (430)
T PRK00178 334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRL 411 (430)
T ss_pred cceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceE
Confidence 46789999998888764112236889999888654332 22233467899999999885332 123577777743 3344
Q ss_pred EecCCCcceEEEEECC
Q 011916 417 TLTGHSLRVLYLATSP 432 (475)
Q Consensus 417 ~l~~h~~~V~~l~~sp 432 (475)
.+..+.+.+...+|+|
T Consensus 412 ~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 412 PLPTAQGEVREPSWSP 427 (430)
T ss_pred ECcCCCCCcCCCccCC
Confidence 5555556677777876
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-12 Score=127.57 Aligned_cols=214 Identities=19% Similarity=0.158 Sum_probs=139.3
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCC---CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRD---RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
..|.++|.. +...+.+..+...+.+.+|+ ++.|+..+.+ ..|.+||+.. +.. ..+....+.+....|+|||+
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-g~~-~~l~~~~g~~~~~~~SPDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-GRR-RVVANFKGSNSAPAWSPDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-CCE-EEeecCCCCccceEECCCCC
Confidence 357777763 44445566677888889994 6777766543 3599999973 332 23333445667899999999
Q ss_pred EEEE-EeCCCcEEEE--ECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE--ECCCCceeeeecCCCC
Q 011916 306 ELAS-GGNDNQLLVW--NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW--NTSNGHQLNSVDTGSQ 380 (475)
Q Consensus 306 ~las-g~~Dg~I~iw--d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw--d~~~~~~~~~~~~~~~ 380 (475)
.|+. .+.++...|| |+..+. ...+..+........|+|||+.+++++. .++...+| ++.++........+..
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~--~~g~~~Iy~~~~~~g~~~~lt~~g~~ 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSD--RGGAPQIYRMPASGGAAQRVTFTGSY 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEec--CCCCcEEEEEECCCCceEEEecCCCC
Confidence 8874 5667765555 554444 4555556666678899999998887653 34444455 5555554333323334
Q ss_pred eeEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCC-C--EEEEecC
Q 011916 381 VCNLAWSKNVNELVSTHGYS-QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE-T--LRFWNVF 452 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg-~--I~iW~~~ 452 (475)
.....|+|+|++|+.++... ...|++||+.+++.. .+..+ .......|+|||+.|+.++.++ . +.+-++.
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 55689999999998753211 126999999887654 33322 2346789999999988877544 2 4455553
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-11 Score=125.43 Aligned_cols=233 Identities=14% Similarity=0.090 Sum_probs=153.9
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-C--eEEEEECCCCeeeEEecCCCCceEEEEe--CCCE
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-G--QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRI 263 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-g--~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~ 263 (475)
.|+++|........+. .....+.+..|+|||+.|+..+.+ + .|.+||+.+++.... ....+.....+| +++.
T Consensus 199 ~l~i~d~dG~~~~~l~--~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNEQMLL--RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCceEee--cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCCCCcCCeeECCCCCE
Confidence 6888888776654443 456788899999999999887543 2 588899988765332 222233345677 5665
Q ss_pred EE-EEeCCCc--EEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-C--CcEEEEECCCCceeEEEeccccce
Q 011916 264 LS-SGSRDRN--ILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-D--NQLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 264 l~-sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-D--g~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
|+ +.+.+|. |.++|+. ......+..+........|+|||+.|+..+. + ..|+++|+.+++... +.......
T Consensus 276 La~~~~~~g~~~Iy~~dl~--tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~ 352 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIA--TKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQN 352 (448)
T ss_pred EEEEEeCCCCeEEEEEECC--CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCC
Confidence 54 5566775 6666775 3334555556666778899999998877654 3 357777887776433 32222333
Q ss_pred eEEEECCCCCcEEEEecCCCCC--eEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC--eEEEEECCCCc
Q 011916 338 KAIAWSPHQSSLLASGGGTADR--CIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN--QIMVWKYPSMA 413 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~ 413 (475)
...+|+|+|++++.+.. .++ .|.++|+.+++..... .........|+|+|+.|+.+.. .++ .+++++. ++.
T Consensus 353 ~~~~~SpDG~~l~~~~~--~~g~~~I~~~dl~~g~~~~lt-~~~~d~~ps~spdG~~I~~~~~-~~g~~~l~~~~~-~G~ 427 (448)
T PRK04792 353 LGGSITPDGRSMIMVNR--TNGKFNIARQDLETGAMQVLT-STRLDESPSVAPNGTMVIYSTT-YQGKQVLAAVSI-DGR 427 (448)
T ss_pred cCeeECCCCCEEEEEEe--cCCceEEEEEECCCCCeEEcc-CCCCCCCceECCCCCEEEEEEe-cCCceEEEEEEC-CCC
Confidence 45799999998888754 333 5677888887654322 2222335689999999887543 333 4777786 555
Q ss_pred eEEEecCCCcceEEEEECC
Q 011916 414 KVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 414 ~~~~l~~h~~~V~~l~~sp 432 (475)
....+..+.+.+...+|+|
T Consensus 428 ~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 428 FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ceEECcCCCCCcCCCccCC
Confidence 6666766667778888887
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4e-12 Score=124.16 Aligned_cols=240 Identities=16% Similarity=0.270 Sum_probs=178.5
Q ss_pred CCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeee----------------------------EEecCCC-----
Q 011916 206 LGPGDSVCSVQWTREGSYI-SVGTNLGQVQVWDGTQCKRV----------------------------RTFGGHQ----- 251 (475)
Q Consensus 206 ~~~~~~V~~v~~spdg~~l-a~g~~dg~v~iwd~~~~~~~----------------------------~~~~~h~----- 251 (475)
+++...-+.|..+|||+|+ |+|...-.|++||+....+. +.+..|.
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~h 127 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRH 127 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCee
Confidence 4677788899999999975 67888899999998753221 1111111
Q ss_pred --CceE----EEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 252 --TRAG----VLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 252 --~~v~----~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
-+|. .++++ ..-|+.++....|+-+++. .+..+..+....+.++++..++-..+|++|+.+|.|..||.+.
T Consensus 128 y~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLE-qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 128 YRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLE-QGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eeeecCcCCccccccCCCccEEEeecCcceEEEEcc-ccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 1222 22222 1234555555677778887 6777777777778999999999888999999999999999997
Q ss_pred CceeEEEec------ccc-----ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--CCeeEEEEcCC-
Q 011916 324 QQPTLRLTE------HTA-----AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKN- 389 (475)
Q Consensus 324 ~~~~~~~~~------h~~-----~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~- 389 (475)
...+..+.. |.+ .|+++.|+.+|-.+.+ |+.+|.+.|||+++.+++..-+|. -+|..+.|.+.
T Consensus 207 ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aV---Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 207 KSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAV---GTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred hhhheeeecccccCCCccccccCcceEEEecCCceeEEe---eccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 765554432 333 4999999998765444 669999999999999988877665 57889999776
Q ss_pred -CCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 390 -VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 390 -~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
++.+++ .....++|||-.+++....+.. +..++.+++-|++.+++++-.++.+..|=+..
T Consensus 284 ~q~~v~S---~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 284 QQNKVVS---MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CCceEEe---cchHHhhhcccccCCceeeccc-cCCcCceeeecCCceEEEecCCCcceeEEccc
Confidence 444554 3567899999999999888874 44499999999999999998888776665543
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-12 Score=124.38 Aligned_cols=262 Identities=15% Similarity=0.220 Sum_probs=178.9
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC----CE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS----RI 263 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~----~~ 263 (475)
-.+.+|+++++.....+....... .+..|+.|..+.|-- ..+.|++|+....+.+ .-.-|...|+.+.+++ ..
T Consensus 105 pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arl-v~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~ 181 (566)
T KOG2315|consen 105 PNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARL-VSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPF 181 (566)
T ss_pred CceeeeeeccceehhheehhhhcC-cccccccchhhhhhh-hcceEEEEecCCccce-eeeeeccceeeEEecCCCCCce
Confidence 368899999955444443322222 688999888654433 3468999998773322 2223567777777752 34
Q ss_pred EEE-----EeCCCcEEEEECCCCC--ccEEEecCccCCEEEEEEcCCCCEE---EEEeCC---------CcEEEEECCCC
Q 011916 264 LSS-----GSRDRNILQHDLRVSS--DYICKLAGHKSEVCGLKWSHDDREL---ASGGND---------NQLLVWNQHSQ 324 (475)
Q Consensus 264 l~s-----gs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~l---asg~~D---------g~I~iwd~~~~ 324 (475)
+++ ++.-+.++||.+.... ..+..-......=..+.|++-|+-| ++..-| .++++.++...
T Consensus 182 vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~ 261 (566)
T KOG2315|consen 182 VAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE 261 (566)
T ss_pred EEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence 443 3556789999886211 2222222233445678999877632 233333 36888888844
Q ss_pred ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec--CCC
Q 011916 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY--SQN 402 (475)
Q Consensus 325 ~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~--~dg 402 (475)
.....+ ...++|.++.|+|+++.+.++- |..--++.|||++ +.++..+. .++-.++-|+|.|++++.+ |+ -.|
T Consensus 262 s~~V~L-~k~GPVhdv~W~~s~~EF~Vvy-GfMPAkvtifnlr-~~~v~df~-egpRN~~~fnp~g~ii~lA-GFGNL~G 336 (566)
T KOG2315|consen 262 SVSVPL-LKEGPVHDVTWSPSGREFAVVY-GFMPAKVTIFNLR-GKPVFDFP-EGPRNTAFFNPHGNIILLA-GFGNLPG 336 (566)
T ss_pred eEEEec-CCCCCceEEEECCCCCEEEEEE-ecccceEEEEcCC-CCEeEeCC-CCCccceEECCCCCEEEEe-ecCCCCC
Confidence 443333 3579999999999999777776 6788999999975 55665553 4556788999999998876 54 468
Q ss_pred eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC------CCCEEEEecCCCCCCCC
Q 011916 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG------DETLRFWNVFPSLKAPA 459 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------Dg~I~iW~~~~~~~~~~ 459 (475)
.|-|||+.+.+++..+.... -+...|+|||++|+|++. |..++||+.........
T Consensus 337 ~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~ 397 (566)
T KOG2315|consen 337 DMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEK 397 (566)
T ss_pred ceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehh
Confidence 99999999999888887544 355799999999999865 78899999987655444
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.6e-12 Score=114.52 Aligned_cols=266 Identities=17% Similarity=0.217 Sum_probs=189.0
Q ss_pred CCeEEEEECCCCcEEEEeeC--CCCCcEEEEEEcC---CCC-EEEEEeCCCeEEEEECCCCeeeEEecCCCC------ce
Q 011916 187 GTCVYLWTASNSKVTRLCDL--GPGDSVCSVQWTR---EGS-YISVGTNLGQVQVWDGTQCKRVRTFGGHQT------RA 254 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~--~~~~~V~~v~~sp---dg~-~la~g~~dg~v~iwd~~~~~~~~~~~~h~~------~v 254 (475)
.|.+++|++.+.+...+-.+ .....+..+.|.. +|. .|+.+...|.|+++..........+.+-.. ..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 46789999887765552221 2346677888864 555 567777889999998765555444443221 23
Q ss_pred EEEEeC--CCEEEEEeCCCcEEEEECC-CCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCceeEE
Q 011916 255 GVLAWN--SRILSSGSRDRNILQHDLR-VSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH-SQQPTLR 329 (475)
Q Consensus 255 ~~l~~~--~~~l~sgs~dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~-~~~~~~~ 329 (475)
.++.|+ +..++++..+|.+.+-+.. ..-+.++..+.|.-++...+|+. +.+.+.+|+.|+.+..||++ .++.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 455563 6789999999999855543 12234457889999999999987 55689999999999999999 3344443
Q ss_pred -EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 330 -LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS-NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 330 -~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
.+.|...|.+|.-+|.....+++|+ .|.+|++||++ -++++..-..++.|..+.++|.-...+.+ .+.-+-.+|.
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGs--YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~-~CMh~G~ki~ 281 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGS--YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA-ACMHNGAKIL 281 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEec--cccceeeeehhcccCccccCccccceEEEEecchhhhHHHH-HHHhcCceEE
Confidence 4558999999999998888899976 99999999999 58888888888999999999975532222 3344556666
Q ss_pred ECCCC--c---eEEEecCCCcceEEEEECCCCCEEEEEeC-CCCEE-EEecCCCC
Q 011916 408 KYPSM--A---KVSTLTGHSLRVLYLATSPDGQTIVTGAG-DETLR-FWNVFPSL 455 (475)
Q Consensus 408 d~~~~--~---~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~-iW~~~~~~ 455 (475)
+.... + .....+.|.+-+..-.|.....+|+|++. |..|+ +|-.-++.
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred EecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence 66443 2 34455678887888888655567888764 77655 77655443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.5e-11 Score=122.83 Aligned_cols=243 Identities=13% Similarity=0.094 Sum_probs=154.2
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE---EEeCCC--eEEEEECCCCeeeEEecCCCCceEEEEe--C
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS---VGTNLG--QVQVWDGTQCKRVRTFGGHQTRAGVLAW--N 260 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la---~g~~dg--~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~ 260 (475)
..|++.|.+.+....+.. ....+.+-.|+|||+.++ +...+| .|.+.++.+++..+. ....+.....+| +
T Consensus 165 ~~l~~~d~dG~~~~~lt~--~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPD 241 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQ--EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPR 241 (428)
T ss_pred ceEEEEcCCCCCceEccc--CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCC
Confidence 378889988877666543 345567889999997532 444443 577778877754333 223334445667 5
Q ss_pred CCEEEEEeC-CC----cEEEEECCCC--CccEEEecCccCCEEEEEEcCCCCEEEEEe-CCCc--EEEEECCC-CceeEE
Q 011916 261 SRILSSGSR-DR----NILQHDLRVS--SDYICKLAGHKSEVCGLKWSHDDRELASGG-NDNQ--LLVWNQHS-QQPTLR 329 (475)
Q Consensus 261 ~~~l~sgs~-dg----~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-~Dg~--I~iwd~~~-~~~~~~ 329 (475)
|+.|+..+. +| .+.+|++... +........+........|+|||+.|+..+ .+|. |+++++.. +.....
T Consensus 242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~ 321 (428)
T PRK01029 242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL 321 (428)
T ss_pred CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence 766665542 33 3344666532 222233333333456789999999888765 4564 44555542 233444
Q ss_pred EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEe-cCCCeEEEEE
Q 011916 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHG-YSQNQIMVWK 408 (475)
Q Consensus 330 ~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g-~~dg~I~iwd 408 (475)
+..+...+....|+|||+.|+.+........|.+||+.+++..........+....|+|+|+.|+.+.. .....|+++|
T Consensus 322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 555556678899999999888876411235799999999887655444456788999999999886432 2345789999
Q ss_pred CCCCceEEEecCCCcceEEEEECCCC
Q 011916 409 YPSMAKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 409 ~~~~~~~~~l~~h~~~V~~l~~spdg 434 (475)
+..++... +....+.+...+|+|-.
T Consensus 402 l~~g~~~~-Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 402 LITKKTRK-IVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCCEEE-eecCCCcccCceecCCC
Confidence 98776543 33344556778888753
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-12 Score=117.82 Aligned_cols=245 Identities=15% Similarity=0.284 Sum_probs=178.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----eeEEecCCC------------CceEEEEe----CCCEEEE
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-----RVRTFGGHQ------------TRAGVLAW----NSRILSS 266 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~----~~~~l~s 266 (475)
..+-|.+|.|...|.+||+|..+|.|.++.-+... ....++.|. ..|..+.| +...++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 35678999999999999999999999999754322 233444443 35778888 3468888
Q ss_pred EeCCCcEEEEECCCCCccE-----------------------------------EEecCccCCEEEEEEcCCCCEEEEEe
Q 011916 267 GSRDRNILQHDLRVSSDYI-----------------------------------CKLAGHKSEVCGLKWSHDDRELASGG 311 (475)
Q Consensus 267 gs~dg~I~iwd~~~~~~~~-----------------------------------~~~~~h~~~V~~l~~s~~~~~lasg~ 311 (475)
.+.|++|++|.+....... .--.+|...|.+|.++.|+..++++.
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD 183 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD 183 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc
Confidence 8999999999886432111 00135778899999999999888875
Q ss_pred CCCcEEEEECCCCceeEE---Eec-----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee----e---c
Q 011916 312 NDNQLLVWNQHSQQPTLR---LTE-----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS----V---D 376 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~---~~~-----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~----~---~ 376 (475)
|=.|.+|++.-...-.. ++. -..-|++..|+|....+++-.+ ..|+|++.|++....... + .
T Consensus 184 -dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfEepe 260 (433)
T KOG1354|consen 184 -DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFEEPE 260 (433)
T ss_pred -ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhcccc
Confidence 57899999874332222 222 2346889999999887777655 799999999985432111 1 0
Q ss_pred ----------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC-CCceEEEecCCC------------cce---EEEEE
Q 011916 377 ----------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP-SMAKVSTLTGHS------------LRV---LYLAT 430 (475)
Q Consensus 377 ----------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~-~~~~~~~l~~h~------------~~V---~~l~~ 430 (475)
.-+.|..+.|++.|+++++ -+-.+|++||+. ..+++.+.+-|. ..| ..++|
T Consensus 261 dp~~rsffseiIsSISDvKFs~sGryils---RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~ 337 (433)
T KOG1354|consen 261 DPSSRSFFSEIISSISDVKFSHSGRYILS---RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSW 337 (433)
T ss_pred CCcchhhHHHHhhhhhceEEccCCcEEEE---eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEE
Confidence 1246889999999999997 234789999994 456666666553 222 45789
Q ss_pred CCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 431 SPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 431 spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
+-++.+++||+....++++++..+.+..
T Consensus 338 sg~~~~v~TGsy~n~frvf~~~~gsk~d 365 (433)
T KOG1354|consen 338 SGNDSYVMTGSYNNVFRVFNLARGSKED 365 (433)
T ss_pred cCCcceEecccccceEEEecCCCCccee
Confidence 9999999999999999999977666543
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-13 Score=128.65 Aligned_cols=164 Identities=19% Similarity=0.291 Sum_probs=127.4
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeC---CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCC--------------C
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDL---GPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQ--------------C 241 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~---~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~--------------~ 241 (475)
.++.+=..|.|++.|....++.+++.. -....|+|+.|-|. ...++++-.+|.+++||.+. +
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 466666678899888877555544432 12478999999994 45677788899999997531 1
Q ss_pred eeeE--------------EecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 242 KRVR--------------TFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 242 ~~~~--------------~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
.... .+..-.+.|..++| +|.+|++.+.||.++|+|.. ..+.+..++..-+...|++|||||+
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fd-t~eLlg~mkSYFGGLLCvcWSPDGK 345 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFD-TQELLGVMKSYFGGLLCVCWSPDGK 345 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeecc-HHHHHHHHHhhccceEEEEEcCCcc
Confidence 1111 11112345666777 57999999999999999998 5666666777778899999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECC
Q 011916 306 ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP 344 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp 344 (475)
+|++|++|..|.||.+...+.+..-.+|...|..|+|.|
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 999999999999999999999999899999999999983
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.4e-10 Score=107.37 Aligned_cols=261 Identities=12% Similarity=0.080 Sum_probs=169.4
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeEEecCCCC-----
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN----------LGQVQVWDGTQCKRVRTFGGHQT----- 252 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~----------dg~v~iwd~~~~~~~~~~~~h~~----- 252 (475)
+.|++.|..+.+++..+..+.... .+ ++|||+.|+++.. +..|.+||..+.+.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 899999999999999887654333 34 9999998888766 68999999999999988873222
Q ss_pred ----ceEEEEeCCCEEEEEe-C-CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-Cc
Q 011916 253 ----RAGVLAWNSRILSSGS-R-DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS-QQ 325 (475)
Q Consensus 253 ----~v~~l~~~~~~l~sgs-~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~-~~ 325 (475)
....++-+|++|++.. . +..|.+.|+. .++.+..+.- .+...-...+.+..++ -+.||......+.. ++
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~-~~kvv~ei~v-p~~~~vy~t~e~~~~~--~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE-GKAFVRMMDV-PDCYHIFPTANDTFFM--HCRDGSLAKVGYGTKGN 179 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECC-CCcEEEEEeC-CCCcEEEEecCCccEE--EeecCceEEEEecCCCc
Confidence 2455666788888765 4 7899999998 4555554443 1122222222222221 12344433333321 11
Q ss_pred ee-E---EEeccccce-eEEEECC-CCCcEEEEecCCCCCeEEEEECCC-----CceeeeecC--------CCCeeEEEE
Q 011916 326 PT-L---RLTEHTAAV-KAIAWSP-HQSSLLASGGGTADRCIRFWNTSN-----GHQLNSVDT--------GSQVCNLAW 386 (475)
Q Consensus 326 ~~-~---~~~~h~~~v-~~l~~sp-~~~~ll~sg~Gs~d~~I~iwd~~~-----~~~~~~~~~--------~~~v~~l~~ 386 (475)
.. . .+..-...+ ..-.|.+ +++.++++ ..|.|.+.|+.. .+.+..+.. .+...-+++
T Consensus 180 ~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs----~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~ 255 (352)
T TIGR02658 180 PKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT----YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAY 255 (352)
T ss_pred eEEeeeeeecCCccccccCCceEcCCCcEEEEe----cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEE
Confidence 11 0 111100000 0113455 88877776 459999999543 333333221 122334999
Q ss_pred cCCCCeEEEE-Ee-------cCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEEe-CCCCEEEEecCCCCC
Q 011916 387 SKNVNELVST-HG-------YSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTGA-GDETLRFWNVFPSLK 456 (475)
Q Consensus 387 s~~~~~l~~~-~g-------~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iW~~~~~~~ 456 (475)
+++++.++++ ++ ...+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.+.|+.+.+.
T Consensus 256 ~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 256 HRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKE 334 (352)
T ss_pred cCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeE
Confidence 9999999983 32 1236899999999999998874 34789999999999 888766 578899999998887
Q ss_pred CCCc
Q 011916 457 APAL 460 (475)
Q Consensus 457 ~~~~ 460 (475)
...+
T Consensus 335 i~~i 338 (352)
T TIGR02658 335 LSSV 338 (352)
T ss_pred Eeee
Confidence 7665
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-11 Score=119.96 Aligned_cols=217 Identities=19% Similarity=0.181 Sum_probs=145.2
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCC---CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRD---RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.|.++|.... ..+.+..+...+...+| +++.|+.+..+ ..|.+||+... . ...+..+.+.+.++.|+|||+.
T Consensus 171 ~l~~~d~~g~-~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g-~-~~~~~~~~~~~~~~~~spDg~~ 247 (417)
T TIGR02800 171 ELQVADYDGA-NPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG-Q-REKVASFPGMNGAPAFSPDGSK 247 (417)
T ss_pred eEEEEcCCCC-CCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC-C-EEEeecCCCCccceEECCCCCE
Confidence 5888887543 34455556667888888 46777776643 47999999743 2 2333445566778999999997
Q ss_pred EEEE-eCCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE
Q 011916 307 LASG-GNDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN 383 (475)
Q Consensus 307 lasg-~~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~ 383 (475)
|+.. +.++ .|++||+.++.. ..+..+........|+|+++.|+++........|+++|+.+++.............
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~ 326 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNAS 326 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccC
Confidence 7654 4343 699999987754 34444555556789999999887765311234688899888776544445566778
Q ss_pred EEEcCCCCeEEEEEecC-CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCC---CEEEEecCCC
Q 011916 384 LAWSKNVNELVSTHGYS-QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE---TLRFWNVFPS 454 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg---~I~iW~~~~~ 454 (475)
..|+|+|+.++.+.... ...|.+||+.++.. ..+... .......|+|||++|+..+.++ .+++.+....
T Consensus 327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 89999999998853211 12789999887543 233322 2345568999999888877654 3555555443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.3e-10 Score=118.58 Aligned_cols=218 Identities=16% Similarity=0.157 Sum_probs=144.5
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCC---CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRD---RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.|.++|.+.+. .+.+..+...+....| +++.|+..+.+ ..|.+||+... . ...+....+.+....|+|||+.
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g-~-~~~l~~~~g~~~~~~~SpDG~~ 256 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG-R-REQITNFEGLNGAPAWSPDGSK 256 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC-C-EEEccCCCCCcCCeEECCCCCE
Confidence 47778876544 3455566778888888 46777665533 36888998733 2 2333334445667899999998
Q ss_pred EEE-EeCCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE
Q 011916 307 LAS-GGNDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN 383 (475)
Q Consensus 307 las-g~~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~ 383 (475)
|+. ...++ .|++||+.+++. ..+..+........|+|+|+.++.+........|+++|+.+++.............
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~ 335 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNAR 335 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccc
Confidence 874 44444 688999988764 34555666677789999999888775311234688889888875443333334456
Q ss_pred EEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC---CCEEEEecCCCCC
Q 011916 384 LAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD---ETLRFWNVFPSLK 456 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g~I~iW~~~~~~~ 456 (475)
..|+|+|+.++.+.. .++ .|.+||+.+++.. .+.. ........|+|||+.|+..+.+ ..|.++++.....
T Consensus 336 ~~~Spdg~~i~~~~~-~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~ 410 (430)
T PRK00178 336 PRLSADGKTLVMVHR-QDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR 410 (430)
T ss_pred eEECCCCCEEEEEEc-cCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence 789999999988632 233 6889999887543 3332 2223356899999998876653 3467777755443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=117.04 Aligned_cols=156 Identities=25% Similarity=0.373 Sum_probs=121.3
Q ss_pred CCCcEEEEEEcC-CCC--EEEEEeCCCeEEEEECCCCeee----------EEecCCCCceEEEEeCC--CEEEEEeCCCc
Q 011916 208 PGDSVCSVQWTR-EGS--YISVGTNLGQVQVWDGTQCKRV----------RTFGGHQTRAGVLAWNS--RILSSGSRDRN 272 (475)
Q Consensus 208 ~~~~V~~v~~sp-dg~--~la~g~~dg~v~iwd~~~~~~~----------~~~~~h~~~v~~l~~~~--~~l~sgs~dg~ 272 (475)
..+.+.|..|.. ++. +|++|-++|.|.+||+.++..+ .....|..+|.++.++. +.=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 346777877654 333 5677888999999999987433 33347899999999963 34467778888
Q ss_pred EEEEECCCCCccE---EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcE
Q 011916 273 ILQHDLRVSSDYI---CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSL 349 (475)
Q Consensus 273 I~iwd~~~~~~~~---~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 349 (475)
+..|.+....... ....-..-.|..+..-||++.+|++|.|+.|+||..++..++..++.|.+.|++++|+|+.. +
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~-l 307 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE-L 307 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc-h
Confidence 8899886432211 11222334588889999999999999999999999999999999999999999999999966 6
Q ss_pred EEEecCCCCCeEEEEEC
Q 011916 350 LASGGGTADRCIRFWNT 366 (475)
Q Consensus 350 l~sg~Gs~d~~I~iwd~ 366 (475)
+++++ .|..|.+|++
T Consensus 308 mAaas--kD~rISLWkL 322 (323)
T KOG0322|consen 308 MAAAS--KDARISLWKL 322 (323)
T ss_pred hhhcc--CCceEEeeec
Confidence 66655 9999999986
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.2e-11 Score=119.55 Aligned_cols=214 Identities=14% Similarity=0.130 Sum_probs=142.6
Q ss_pred EecCCC--C--EEEEEc---CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CC----eEEEEECCCC
Q 011916 174 VDWSSQ--N--VLAVGL---GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LG----QVQVWDGTQC 241 (475)
Q Consensus 174 l~ws~~--~--~la~~~---~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg----~v~iwd~~~~ 241 (475)
-.|||+ . ++.++. ...|++.++.+++..++... .+.....+|+|||+.||..+. +| .+.+|++..+
T Consensus 190 P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~--~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g 267 (428)
T PRK01029 190 PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL--QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETG 267 (428)
T ss_pred ceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC--CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccC
Confidence 589998 3 333443 24799999999987776643 445567899999999887653 23 3444776652
Q ss_pred ---eeeEEecCCCCceEEEEe--CCCEEEEEe-CCCcEEEEE--CCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC
Q 011916 242 ---KRVRTFGGHQTRAGVLAW--NSRILSSGS-RDRNILQHD--LRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND 313 (475)
Q Consensus 242 ---~~~~~~~~h~~~v~~l~~--~~~~l~sgs-~dg~I~iwd--~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D 313 (475)
+.......+.......+| +|+.|+..+ .+|...+|. +...+.....+..+...+....|+|||+.|+..+.+
T Consensus 268 ~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~ 347 (428)
T PRK01029 268 AIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI 347 (428)
T ss_pred CCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC
Confidence 333333333334456677 566666554 567655554 432233345555555677889999999999877543
Q ss_pred ---CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCC
Q 011916 314 ---NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNV 390 (475)
Q Consensus 314 ---g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~ 390 (475)
..|++||+.+++.. .+......+....|+|+|+.|+.+........|+++|+.+++........+.+...+|+|-.
T Consensus 348 ~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 348 KGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 46999999988754 34333446778999999998887654223567999999888776666556667788888753
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.3e-10 Score=109.80 Aligned_cols=210 Identities=12% Similarity=0.194 Sum_probs=153.2
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCC-C-C------C---cEEEEE-EcC-CCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLG-P-G------D---SVCSVQ-WTR-EGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~-~-~------~---~V~~v~-~sp-dg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
..-+.....|.|+++|.++..+.++- ++ . . . +..-+. |++ +|.+++..+. |...|.+...+-.++
T Consensus 278 GkrIvFq~~GdIylydP~td~lekld-I~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~~iq 355 (668)
T COG4946 278 GKRIVFQNAGDIYLYDPETDSLEKLD-IGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGYSIQ 355 (668)
T ss_pred CcEEEEecCCcEEEeCCCcCcceeee-cCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCCeeEE
Confidence 46777888999999999998876652 22 0 0 0 111111 444 7899999887 888888877665554
Q ss_pred EecCCCCceEEEEe--CCCEEEEEeCCC-cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 246 TFGGHQTRAGVLAW--NSRILSSGSRDR-NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 246 ~~~~h~~~v~~l~~--~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
. +|.+.|.-..+ ++.-++.|..|| .+-|+|.+ +..+..+...-+.|.+++.+++|++++.+.....|.+.|+.
T Consensus 356 v--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~--~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 356 V--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD--GGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred c--CCCCceEEEEEccCCcceEEeccCCceEEEEecC--CceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 3 45666665555 567899999999 89999997 34456666777889999999999999999998999999999
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEec-CCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEE
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG-GTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 394 (475)
++.....-+...+-|..++|+|++++++.+-- |.....|+++|+.+++........+.-.+-+|.|++++|.
T Consensus 432 ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 432 NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence 99876555556788999999999997766431 2345679999999887766554444444555555555543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.7e-11 Score=113.31 Aligned_cols=280 Identities=13% Similarity=0.132 Sum_probs=195.4
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC--------------
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG-------------- 231 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg-------------- 231 (475)
.++.+..++|||. .+|+......|.+|.-........+ . ...|..+.|+|.++||.+=...+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~--~-~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRF--R-HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhccceEEccccchhheeee--e-cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 3466777999997 5677777788999998887744433 3 35789999999999999865433
Q ss_pred -eEEEEECCCCeeeEEecCCCCc--eE-EEEe--CCCEEEEEeCCCcEEEEECCCCCc---cEEEecCccCCEEEEEEcC
Q 011916 232 -QVQVWDGTQCKRVRTFGGHQTR--AG-VLAW--NSRILSSGSRDRNILQHDLRVSSD---YICKLAGHKSEVCGLKWSH 302 (475)
Q Consensus 232 -~v~iwd~~~~~~~~~~~~h~~~--v~-~l~~--~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~ 302 (475)
.+.+||..++..+..+.+...+ .+ -+.| +..+++-. ....+.|+++. ..- ....+. ...|....|+|
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t-~n~~~~p~~~lr--~~gi~dFsisP 183 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEIT-DNIEEHPFKNLR--PVGILDFSISP 183 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecC-CccccCchhhcc--ccceeeEEecC
Confidence 4999999999999999876655 33 3444 45444433 34578899873 221 112222 35688899999
Q ss_pred CC--CEEEE-----EeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecC--------CCCCeEEEEECC
Q 011916 303 DD--RELAS-----GGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGG--------TADRCIRFWNTS 367 (475)
Q Consensus 303 ~~--~~las-----g~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G--------s~d~~I~iwd~~ 367 (475)
.+ ..||. .+.++.++||.+..+..+.+..-....-..+.|.+.|.+|++-.-- .....++++++.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 53 34554 4677899999998777665544444555678999999987764310 013568889988
Q ss_pred CCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC---C
Q 011916 368 NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD---E 444 (475)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D---g 444 (475)
...+....+..++|..++|.|.++.+++++|..+-.+.++|++.. ....+ ....=+.+.|+|.+++++.++-| |
T Consensus 264 e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~--Pe~~rNT~~fsp~~r~il~agF~nl~g 340 (561)
T COG5354 264 ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF--PEQKRNTIFFSPHERYILFAGFDNLQG 340 (561)
T ss_pred ccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec--CCcccccccccCcccEEEEecCCcccc
Confidence 555555556789999999999999999999999999999999866 33222 23333556677777777776654 5
Q ss_pred CEEEEecCCCCC
Q 011916 445 TLRFWNVFPSLK 456 (475)
Q Consensus 445 ~I~iW~~~~~~~ 456 (475)
.|-+|+.....+
T Consensus 341 ni~i~~~~~rf~ 352 (561)
T COG5354 341 NIEIFDPAGRFK 352 (561)
T ss_pred ceEEeccCCceE
Confidence 567777654443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.4e-11 Score=109.83 Aligned_cols=224 Identities=17% Similarity=0.301 Sum_probs=156.2
Q ss_pred CCCEEEEEcCCeEEEEEC-CCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----CCeeeEEecCCCC
Q 011916 178 SQNVLAVGLGTCVYLWTA-SNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT----QCKRVRTFGGHQT 252 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~-~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~----~~~~~~~~~~h~~ 252 (475)
.+.++.++.|..++||-- +.++.-..+......+++++.+.++...|++|-.+|++.-+.+. .....+....|..
T Consensus 36 e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~ 115 (404)
T KOG1409|consen 36 EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQA 115 (404)
T ss_pred CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhc
Confidence 358999999999999954 44444333322346789999999999999999999999888653 4455666778999
Q ss_pred ceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeE
Q 011916 253 RAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH--SQQPTL 328 (475)
Q Consensus 253 ~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~--~~~~~~ 328 (475)
++..+-|+ ...+++.+.|..+.-.-.+. +..+..+.. ...-.++.+. -.+...|...|.|.+-.+. .-.++.
T Consensus 116 ~v~~~if~~~~e~V~s~~~dk~~~~hc~e~-~~~lg~Y~~-~~~~t~~~~d--~~~~fvGd~~gqvt~lr~~~~~~~~i~ 191 (404)
T KOG1409|consen 116 RVSAIVFSLTHEWVLSTGKDKQFAWHCTES-GNRLGGYNF-ETPASALQFD--ALYAFVGDHSGQITMLKLEQNGCQLIT 191 (404)
T ss_pred ceeeEEecCCceeEEEeccccceEEEeecc-CCcccceEe-eccCCCCcee--eEEEEecccccceEEEEEeecCCceEE
Confidence 99999996 58899999998876554442 221111100 0000111111 1144455555666554443 445688
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEE
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH--QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~--~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 406 (475)
++.+|.+.+.+++|.+... ++.+|. .|..+.+||+-..+ ......+...|..+...+..+.+++ ...||.|.+
T Consensus 192 ~~~~h~~~~~~l~Wd~~~~-~LfSg~--~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S--~~edg~i~~ 266 (404)
T KOG1409|consen 192 TFNGHTGEVTCLKWDPGQR-LLFSGA--SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLIS--CGEDGGIVV 266 (404)
T ss_pred EEcCcccceEEEEEcCCCc-EEEecc--ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeee--ccCCCeEEE
Confidence 8999999999999999877 566644 89999999986544 3333456677888888888888888 778999999
Q ss_pred EECC
Q 011916 407 WKYP 410 (475)
Q Consensus 407 wd~~ 410 (475)
|++.
T Consensus 267 w~mn 270 (404)
T KOG1409|consen 267 WNMN 270 (404)
T ss_pred Eecc
Confidence 9975
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-10 Score=114.44 Aligned_cols=217 Identities=17% Similarity=0.151 Sum_probs=139.3
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeC-CC--cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR-DR--NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.|.++|...... +.+..+...+....| +|+.|+..+. ++ .|.+||+... .. ..+....+......|+|||+.
T Consensus 199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg-~~-~~lt~~~g~~~~~~wSPDG~~ 275 (448)
T PRK04792 199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ-VR-EKVTSFPGINGAPRFSPDGKK 275 (448)
T ss_pred EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCC-Ce-EEecCCCCCcCCeeECCCCCE
Confidence 567777654433 445556677888888 4677766543 33 5888888743 22 223323334457899999998
Q ss_pred EEE-EeCCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE
Q 011916 307 LAS-GGNDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN 383 (475)
Q Consensus 307 las-g~~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~ 383 (475)
|+. .+.++ .|+++|+.+++. ..+..+.......+|+||++.++.+........|+++|+.+++.............
T Consensus 276 La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~ 354 (448)
T PRK04792 276 LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLG 354 (448)
T ss_pred EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcC
Confidence 875 45555 488889887764 44455556677899999999888876412235688888888875543333333456
Q ss_pred EEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC-CC--EEEEecCCCC
Q 011916 384 LAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD-ET--LRFWNVFPSL 455 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-g~--I~iW~~~~~~ 455 (475)
..|+|+|+.|+.+. ..++ .|.++|+.+++.. .+... .......|+|||+.|+..+.+ +. |++++.....
T Consensus 355 ~~~SpDG~~l~~~~-~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~ 428 (448)
T PRK04792 355 GSITPDGRSMIMVN-RTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRF 428 (448)
T ss_pred eeECCCCCEEEEEE-ecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 79999999998853 3344 5666788777543 33322 122345899999988776543 33 6777775443
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.9e-12 Score=126.71 Aligned_cols=282 Identities=19% Similarity=0.296 Sum_probs=196.6
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECCCC-cEEEEeeCCCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCC---C
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTASNS-KVTRLCDLGPGDSVCSVQWTRE--GSYISVGTNLGQVQVWDGTQ---C 241 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~~~-~~~~~~~~~~~~~V~~v~~spd--g~~la~g~~dg~v~iwd~~~---~ 241 (475)
.++++..+|- .++.++ .-.+++.|+... .....+..-..-.|-.+.|++. -.+-++......-.+|++.. .
T Consensus 26 ~~~a~si~p~grdi~lAs-r~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~ 104 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLAS-RQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN 104 (1081)
T ss_pred cccceeeccccchhhhhh-hcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCcc
Confidence 3444555542 333333 334556666543 2223322122345778899884 35677777777788999753 2
Q ss_pred eeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 242 KRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 242 ~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
.....+.+|...|+.+.|+ +..+++++.|-.+..||++.....+.....-......++|+.....+.+.+..+.|.+
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v 184 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV 184 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence 3344566999999999996 5799999999999999999888887777766677888999984444444455678999
Q ss_pred EECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC--ceeeeecCCCCeeEEEEcCCCCeEEE
Q 011916 319 WNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG--HQLNSVDTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 319 wd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~ 395 (475)
||++.+ .++..+++|...|..++|...-...+.+.+ .|++|++||.... +....+.+..+|..-.+-|-|.-.++
T Consensus 185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~--~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~ 262 (1081)
T KOG0309|consen 185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS--NDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI 262 (1081)
T ss_pred EeccCCCcceEEecccceeeehHHHhhhhhhhhcccC--CCCceeeecccccccccceeccccCcceeccccccCceeEe
Confidence 999865 577888889999999999876555566654 8999999998653 34455567778888888886655444
Q ss_pred EEecCCCeEEEEECC----------CCceEEEecCCCcceEEEEECCCCC----------EEEEEeCCCCEEEEecCCC
Q 011916 396 THGYSQNQIMVWKYP----------SMAKVSTLTGHSLRVLYLATSPDGQ----------TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~----------~~~~~~~l~~h~~~V~~l~~spdg~----------~l~s~s~Dg~I~iW~~~~~ 454 (475)
.-.-.++.+.+++.+ ..+.+..+.||++.|....|-..++ .|+|-+.|.++++|-+...
T Consensus 263 mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 263 MPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 212223344444432 2467899999999998877754322 7999999999999998753
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-10 Score=115.19 Aligned_cols=184 Identities=15% Similarity=0.208 Sum_probs=152.6
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeC--CCCCcEEEEEEc--------------------CCCCEEEEEeCCCeEEEEE
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDL--GPGDSVCSVQWT--------------------REGSYISVGTNLGQVQVWD 237 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~--~~~~~V~~v~~s--------------------pdg~~la~g~~dg~v~iwd 237 (475)
.++....||.+++|+...++...-+.- ...+..++..|. .|-..++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 345556699999999999887665532 123444555553 1334788899999999999
Q ss_pred CCCCeeeEEec--CCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC
Q 011916 238 GTQCKRVRTFG--GHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND 313 (475)
Q Consensus 238 ~~~~~~~~~~~--~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D 313 (475)
+..++....+. .|.+.|.++.|+. ..|.+++.|+.+..|+.. ....++........+.+++.+|||..|++++
T Consensus 87 ~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~-~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-- 163 (541)
T KOG4547|consen 87 VAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK-EKVIIRIWKEQKPLVSSLCISPDGKILLTAS-- 163 (541)
T ss_pred ecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc-cceeeeeeccCCCccceEEEcCCCCEEEecc--
Confidence 99999988876 7999999999954 789999999999999998 6777888888888999999999999999988
Q ss_pred CcEEEEECCCCceeEEEeccccceeEEEECCC-----CCcEEEEecCCCCCeEEEEECCC
Q 011916 314 NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH-----QSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 314 g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~-----~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
+.|++||+++.+.+..|.+|.++|.+++|.-. |.+++++.. .+.-|.+|-+..
T Consensus 164 ~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~--~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 164 RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA--AERGITVWVVEK 221 (541)
T ss_pred ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc--cccceeEEEEEc
Confidence 58999999999999999999999999999877 788888865 677788887654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-09 Score=98.79 Aligned_cols=265 Identities=9% Similarity=0.122 Sum_probs=181.8
Q ss_pred CCeEEEEECCC--CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEECCC--CeeeEE--ecCCCCceEEE
Q 011916 187 GTCVYLWTASN--SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---GQVQVWDGTQ--CKRVRT--FGGHQTRAGVL 257 (475)
Q Consensus 187 ~~~V~lw~~~~--~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g~v~iwd~~~--~~~~~~--~~~h~~~v~~l 257 (475)
+..|++|++.+ +++.........+.++-++|+|++++|.++..+ |.|..|.++. |++... .......-+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 67899999873 333333333567888999999999999988665 6677777664 444321 11112222555
Q ss_pred Ee--CCCEEEEEe-CCCcEEEEECCCCCccE--EEecCccCC----------EEEEEEcCCCCEEEEEeC-CCcEEEEEC
Q 011916 258 AW--NSRILSSGS-RDRNILQHDLRVSSDYI--CKLAGHKSE----------VCGLKWSHDDRELASGGN-DNQLLVWNQ 321 (475)
Q Consensus 258 ~~--~~~~l~sgs-~dg~I~iwd~~~~~~~~--~~~~~h~~~----------V~~l~~s~~~~~lasg~~-Dg~I~iwd~ 321 (475)
+. ++++++++. ..|.|.++-++..+... .....|.+. +....+.|++++|++..- -..|.+|++
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 55 577888776 45789999987554332 223335444 888999999999998753 237999999
Q ss_pred CCCceeE----EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ce---eeee-------cCCCCeeEEEE
Q 011916 322 HSQQPTL----RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQ---LNSV-------DTGSQVCNLAW 386 (475)
Q Consensus 322 ~~~~~~~----~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~---~~~~-------~~~~~v~~l~~ 386 (475)
..+.... .+ ...+.-+.|+|+|+++..++..- -+++|.+|..... .. ++.+ ........|.+
T Consensus 175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~E--L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNE--LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred ccCcccccccccc-CCCCCcceEEEcCCCcEEEEEec--cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 9775432 22 23456789999999998888765 8999999998773 22 2222 23456788999
Q ss_pred cCCCCeEEEEEecCCCeEEEEECCCC-ceEEEe---cCCCcceEEEEECCCCCEEEEEeCC-CCEEEEecCCCC
Q 011916 387 SKNVNELVSTHGYSQNQIMVWKYPSM-AKVSTL---TGHSLRVLYLATSPDGQTIVTGAGD-ETLRFWNVFPSL 455 (475)
Q Consensus 387 s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l---~~h~~~V~~l~~spdg~~l~s~s~D-g~I~iW~~~~~~ 455 (475)
+++|++|+++. -....|.+|.+... ..+..+ ..+........|+++|++|+++..| ..|.+|.++...
T Consensus 252 s~dGrFLYasN-Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 252 SPDGRFLYASN-RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred CCCCCEEEEec-CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 99999999853 34457888887543 222222 2344447889999999999998875 469999987654
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.1e-11 Score=115.20 Aligned_cols=184 Identities=18% Similarity=0.345 Sum_probs=145.8
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEe------cCccC
Q 011916 222 SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKL------AGHKS 293 (475)
Q Consensus 222 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~------~~h~~ 293 (475)
.++++|+ ...|+-++++.|+.+..+....+.++++..+. .+|++|+.+|.|..||.+... .+..+ ..|.+
T Consensus 147 Dly~~gs-g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks-rv~~l~~~~~v~s~pg 224 (703)
T KOG2321|consen 147 DLYLVGS-GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS-RVGTLDAASSVNSHPG 224 (703)
T ss_pred cEEEeec-CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh-hheeeecccccCCCcc
Confidence 3344444 45788889999999999988889999999974 788889999999999998433 33222 23333
Q ss_pred -----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-ccccceeEEEECCCC-CcEEEEecCCCCCeEEEEEC
Q 011916 294 -----EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-EHTAAVKAIAWSPHQ-SSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 294 -----~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~sp~~-~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.|+++.|+.+|-.+++|..+|.|.|||++..+++..-. +...+|..+.|.+.+ ...+++. ....++|||-
T Consensus 225 ~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~---Dk~~~kiWd~ 301 (703)
T KOG2321|consen 225 GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM---DKRILKIWDE 301 (703)
T ss_pred ccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec---chHHhhhccc
Confidence 49999999999999999999999999999998876543 234578999997652 2234443 5788999999
Q ss_pred CCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011916 367 SNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
.+|+....++....+..+++-|++..+++ +..+..+..|=++..
T Consensus 302 ~~Gk~~asiEpt~~lND~C~~p~sGm~f~--Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 302 CTGKPMASIEPTSDLNDFCFVPGSGMFFT--ANESSKMHTYYIPSL 345 (703)
T ss_pred ccCCceeeccccCCcCceeeecCCceEEE--ecCCCcceeEEcccc
Confidence 99999999998888999999999999999 777787877777654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.2e-11 Score=123.99 Aligned_cols=264 Identities=18% Similarity=0.227 Sum_probs=181.3
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEE--EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEE
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSV--QWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVL 257 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v--~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l 257 (475)
..|.++.+..|.+||+..+..+..+..-+.-.+... ...-.+.+++++..-+.+..=+.. .+....+..+... ..+
T Consensus 18 ~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~-~~~~~~~s~wi~g-~~l 95 (967)
T KOG0974|consen 18 DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEAS-NQIIERFSDWIFG-AKL 95 (967)
T ss_pred ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchh-hhhhhhccccccc-cch
Confidence 456777888999999999876554432111111100 000123345555443433332211 1111222222212 445
Q ss_pred EeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccC-----CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec
Q 011916 258 AWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS-----EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 258 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-----~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
.|....++.++.+..+.+||... ........ +.. ...-+.++++.-++++|+.-+.|.+|+....+.-..+.+
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~-~~~~~~i~-~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~G 173 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKN-SSVLSKIQ-SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKG 173 (967)
T ss_pred hhhcceEEEEEcCceEEEEeccc-CceehhcC-CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecc
Confidence 56778899999999999999973 33322222 221 122334456667899999999999999985444446889
Q ss_pred cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee--eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN--SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~--~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
|.+.|.++.|+-+|++++.+. .|+.+++|++.+.+... .+.|...+..++|.|+ ++++ ++.|-+.++|+..
T Consensus 174 HeG~iF~i~~s~dg~~i~s~S---dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t--~gedctcrvW~~~ 246 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVS---DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIIT--VGEDCTCRVWGVN 246 (967)
T ss_pred cCCceEEEEEccCCcEEEEEe---cCcceeeeecccccccCcccccccceeEEEEeccc--eeEE--eccceEEEEEecc
Confidence 999999999999999666654 89999999999988776 4568889999999999 7777 7799999999654
Q ss_pred CCceEEEecCCCcc-eEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 411 SMAKVSTLTGHSLR-VLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 411 ~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
++.+..+.+|... |..++..++...++|++.|+.+++|++....
T Consensus 247 -~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 247 -GTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred -cceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccc
Confidence 4555577788654 8999999999999999999999999987544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.8e-10 Score=115.30 Aligned_cols=282 Identities=16% Similarity=0.280 Sum_probs=200.0
Q ss_pred CCCCCCceeEEecCCC-CEEEE-EcCCeEEEEECCCCcE---------------EEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 164 SLQDDFYLNLVDWSSQ-NVLAV-GLGTCVYLWTASNSKV---------------TRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 164 ~~~~d~~v~~l~ws~~-~~la~-~~~~~V~lw~~~~~~~---------------~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
.++....++|+.|+.+ +++|+ |.+|.+++..+.+... .+.++ +|.+.|.-+.|+.+.+.|-+
T Consensus 10 ~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLe-GH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 10 GIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLE-GHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhc-cCcceEEEEEeccccccccc
Confidence 3456677899999975 55554 5699999998765321 12222 89999999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeEEec--CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC
Q 011916 227 GTNLGQVQVWDGTQCKRVRTFG--GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH 302 (475)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~--~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 302 (475)
...+|.|.||-+-.+.-...+. ...+.|.+++| +|..++..-.||.|.+-.+....-.-+.+++ .....+.|++
T Consensus 89 SDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~ 166 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSE 166 (1189)
T ss_pred cCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecc
Confidence 9999999999988876655554 34567899999 4899999999999988887632222222222 2245788999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCc-------eeE----EEeccccceeEEEEC--------CCCCcEEEEecCCCCCeEEE
Q 011916 303 DDRELASGGNDNQLLVWNQHSQQ-------PTL----RLTEHTAAVKAIAWS--------PHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 303 ~~~~lasg~~Dg~I~iwd~~~~~-------~~~----~~~~h~~~v~~l~~s--------p~~~~ll~sg~Gs~d~~I~i 363 (475)
|.+.++.+-..|.+.+||....- +.. .+......|-.+.|. |+...++++- ..|.+.|
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy---~nGr~Qi 243 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY---ANGRMQI 243 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE---cCceehh
Confidence 99999888888999999976421 111 112223346666664 4666555543 6888888
Q ss_pred EECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecC--------CCeEEEEECCCCceEEEecCCCcceEEEEECCCCC
Q 011916 364 WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYS--------QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 364 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~--------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
-.-.+......++++-.+..+.|+++|..|+++ |.. .+.|++|. +-|+.+.+++.....|++++|-..|-
T Consensus 244 MR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvc-G~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVC-GNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGL 321 (1189)
T ss_pred hhhcCCCCCeEEecccEeecceecCCCcEEEEc-cCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCce
Confidence 766666666667778889999999999999985 332 13555554 56788888888888899999977776
Q ss_pred EEEEEeCCCCEEEEecCCC
Q 011916 436 TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~ 454 (475)
.++.+ .|+.|++=++.+.
T Consensus 322 riA~A-vdsfiyfanIRP~ 339 (1189)
T KOG2041|consen 322 RIAIA-VDSFIYFANIRPE 339 (1189)
T ss_pred EEEEE-ecceEEEEeeccc
Confidence 66544 4666666555543
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-09 Score=103.16 Aligned_cols=231 Identities=12% Similarity=0.098 Sum_probs=157.7
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCC------CcEEEEEEcCCCCEEEEEe-C-CCeEEEEECCCCeeeEEecCCCCceEEE
Q 011916 186 LGTCVYLWTASNSKVTRLCDLGPG------DSVCSVQWTREGSYISVGT-N-LGQVQVWDGTQCKRVRTFGGHQTRAGVL 257 (475)
Q Consensus 186 ~~~~V~lw~~~~~~~~~~~~~~~~------~~V~~v~~spdg~~la~g~-~-dg~v~iwd~~~~~~~~~~~~h~~~v~~l 257 (475)
.+..|.+||..+.+.+..+.++.. .....++++|||++|++.. . +..|.+.|+.+++.+.++.-.. ...-+
T Consensus 75 ~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy 153 (352)
T TIGR02658 75 RTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIF 153 (352)
T ss_pred CCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEE
Confidence 468999999999999988876422 2334788999999999877 3 6899999999999999887422 22333
Q ss_pred EeCCCEEEEEeCCCcEEEEECCCCCccEEEe-c-Ccc--CCEEE-EEEcC-CCCEEEEEeCCCcEEEEECCCCc-----e
Q 011916 258 AWNSRILSSGSRDRNILQHDLRVSSDYICKL-A-GHK--SEVCG-LKWSH-DDRELASGGNDNQLLVWNQHSQQ-----P 326 (475)
Q Consensus 258 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~-~h~--~~V~~-l~~s~-~~~~lasg~~Dg~I~iwd~~~~~-----~ 326 (475)
........+-+.||......+...++....- . .+. ..+.. -.|.+ +|+++.+... |.|++.|+.... .
T Consensus 154 ~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~ 232 (352)
T TIGR02658 154 PTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPA 232 (352)
T ss_pred EecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecce
Confidence 3333333344556666555444333321110 0 011 00000 03455 8888877776 999999965432 2
Q ss_pred eEEEec-------cccceeEEEECCCCCcEEEEecC-------CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCC-
Q 011916 327 TLRLTE-------HTAAVKAIAWSPHQSSLLASGGG-------TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVN- 391 (475)
Q Consensus 327 ~~~~~~-------h~~~v~~l~~sp~~~~ll~sg~G-------s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~- 391 (475)
...+.. ..+.+.-++++++++.+++...+ ...+.|.++|+.+++.+..+..+..+..+++++|++
T Consensus 233 ~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp 312 (352)
T TIGR02658 233 IEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKP 312 (352)
T ss_pred eeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCe
Confidence 222211 23344559999999988884311 023689999999999999999999999999999999
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEec
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
.|+++ ...++.|.++|..+++.+.++.
T Consensus 313 ~lyvt-n~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 313 LLYAL-STGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEe-CCCCCcEEEEECcCCeEEeeec
Confidence 77765 4468889999999999998873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.9e-10 Score=108.01 Aligned_cols=284 Identities=14% Similarity=0.250 Sum_probs=186.3
Q ss_pred ceeEEecCCC--CEEEEEc-----------CCeEEEEECCCCcEEEEeeC--CCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 170 YLNLVDWSSQ--NVLAVGL-----------GTCVYLWTASNSKVTRLCDL--GPGDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~-----------~~~V~lw~~~~~~~~~~~~~--~~~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
++..++|||. .+++.+. +..+.|||+.+|...+.+.. +....-.-+.||.|++|+|.-.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 4666888886 3444432 25799999999998887764 22222335689999999998877 4799
Q ss_pred EEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeC-----CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEE
Q 011916 235 VWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSR-----DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 235 iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~-----dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 307 (475)
||+..+..++..-.-.-..|..+.|.+ ++||-=.. -..+.+..+. ....++...-|.-.=+.+.|-.+|.+|
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evP-s~~~iRt~nlfnVsDckLhWQk~gdyL 408 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVP-SKREIRTKNLFNVSDCKLHWQKSGDYL 408 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecC-ccceeeeccceeeeccEEEeccCCcEE
Confidence 999877555433333445677788865 34433221 1234444554 334445555555556778888899988
Q ss_pred EEEe----------CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-C---ceee
Q 011916 308 ASGG----------NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-G---HQLN 373 (475)
Q Consensus 308 asg~----------~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~---~~~~ 373 (475)
+.-- .-..+.|+.++..........-...|...+|-|.|..+++..+.+...++.+|.+.+ . ..+.
T Consensus 409 cvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk 488 (698)
T KOG2314|consen 409 CVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVK 488 (698)
T ss_pred EEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhh
Confidence 7632 112355666665443223334567889999999999888777666778899998873 2 2333
Q ss_pred eecCCCCeeEEEEcCCCCeEEEEE-ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC------CCCE
Q 011916 374 SVDTGSQVCNLAWSKNVNELVSTH-GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG------DETL 446 (475)
Q Consensus 374 ~~~~~~~v~~l~~s~~~~~l~~~~-g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------Dg~I 446 (475)
.++. ...+.+.|+|.|+.++++. ++..|.+.++|+........-.......+.+.|.|.|+|++|++. |.-.
T Consensus 489 ~~dk-~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GY 567 (698)
T KOG2314|consen 489 ELDK-KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGY 567 (698)
T ss_pred hhcc-cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccce
Confidence 3433 5577899999999988752 335789999998742222221112234577899999999999865 5567
Q ss_pred EEEecCCCCC
Q 011916 447 RFWNVFPSLK 456 (475)
Q Consensus 447 ~iW~~~~~~~ 456 (475)
+||++.....
T Consensus 568 ri~tfqGrll 577 (698)
T KOG2314|consen 568 RIFTFQGRLL 577 (698)
T ss_pred EEEEeecHHH
Confidence 8888876543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-08 Score=99.78 Aligned_cols=254 Identities=15% Similarity=0.141 Sum_probs=162.9
Q ss_pred EecCCC--CEEEEEc----CCeEEEEECCC--CcEEEEeeCC-CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCC-Ce
Q 011916 174 VDWSSQ--NVLAVGL----GTCVYLWTASN--SKVTRLCDLG-PGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQ-CK 242 (475)
Q Consensus 174 l~ws~~--~~la~~~----~~~V~lw~~~~--~~~~~~~~~~-~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~-~~ 242 (475)
++++++ .+.++.. .+.|..|.+.. +++..+-... .......++++|++++|+++.. +|.|.++++.. +.
T Consensus 42 l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~ 121 (345)
T PF10282_consen 42 LAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS 121 (345)
T ss_dssp EEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE
T ss_pred EEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc
Confidence 556654 3555544 45888888766 4554444332 4566788999999999999875 89999999976 43
Q ss_pred eeEE---ec----------CCCCceEEEEeC--CCEEEEEe-CCCcEEEEECCCCCccEEE----ecCccCCEEEEEEcC
Q 011916 243 RVRT---FG----------GHQTRAGVLAWN--SRILSSGS-RDRNILQHDLRVSSDYICK----LAGHKSEVCGLKWSH 302 (475)
Q Consensus 243 ~~~~---~~----------~h~~~v~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~~----~~~h~~~V~~l~~s~ 302 (475)
.... +. .......++.++ ++++++.. ....|.+|++......+.. .......-..+.|+|
T Consensus 122 l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p 201 (345)
T PF10282_consen 122 LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP 201 (345)
T ss_dssp EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T
T ss_pred cceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC
Confidence 3322 21 122456677774 56666654 3457999999754422211 223445688999999
Q ss_pred CCCEEEEEe-CCCcEEEEECC--CCce--eEEEecc------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECC--CC
Q 011916 303 DDRELASGG-NDNQLLVWNQH--SQQP--TLRLTEH------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS--NG 369 (475)
Q Consensus 303 ~~~~lasg~-~Dg~I~iwd~~--~~~~--~~~~~~h------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~--~~ 369 (475)
+++++.+.. .++.|.++++. .+.. +..+... ......|+++|+|++|+++.. ..+.|.+|++. ++
T Consensus 202 dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr--~~~sI~vf~~d~~~g 279 (345)
T PF10282_consen 202 DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR--GSNSISVFDLDPATG 279 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC--TTTEEEEEEECTTTT
T ss_pred CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec--cCCEEEEEEEecCCC
Confidence 999887665 46789999988 4422 2222211 125788999999999999876 68999999983 34
Q ss_pred c--eeeeecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCceEEEec-CCCcceEEEEE
Q 011916 370 H--QLNSVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY--PSMAKVSTLT-GHSLRVLYLAT 430 (475)
Q Consensus 370 ~--~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~--~~~~~~~~l~-~h~~~V~~l~~ 430 (475)
+ .+..+.. +.....+.++|+|++|+++ +..++.|.+|++ .++.....-. ..-....||.|
T Consensus 280 ~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va-~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 280 TLTLVQTVPTGGKFPRHFAFSPDGRYLYVA-NQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp TEEEEEEEEESSSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred ceEEEEEEeCCCCCccEEEEeCCCCEEEEE-ecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 3 3334444 4558999999999999986 557788999976 4555433322 12334556655
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.4e-11 Score=115.45 Aligned_cols=213 Identities=20% Similarity=0.256 Sum_probs=160.3
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeEEecC---CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCE
Q 011916 219 REGSYISVGTNLGQVQVWDGTQCKRVRTFGG---HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEV 295 (475)
Q Consensus 219 pdg~~la~g~~dg~v~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V 295 (475)
|.+.|+|....||.++||+..+++....|.. -.+..++..|. |.. ...+.+...- ..+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~---L~~--------------~~s~~k~~~~--~~~ 63 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG---LSA--------------DYSPMKWLSL--EKA 63 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE---EEe--------------ccchHHHHhH--HHH
Confidence 4567999999999999999999988877752 23344455554 111 1111111000 001
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee
Q 011916 296 CGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN 373 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~ 373 (475)
. .-+.|...++-|...|.|.+|+...++....+. .|.+.|.++.++.+-..|..++ .|..+..|+...+..+.
T Consensus 64 ~--~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~---ad~~v~~~~~~~~~~~~ 138 (541)
T KOG4547|consen 64 K--KASLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG---ADLKVVYILEKEKVIIR 138 (541)
T ss_pred h--hccCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC---CceeEEEEecccceeee
Confidence 1 113355578888999999999999998887776 4999999999998877566554 79999999999999888
Q ss_pred eecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC-----CCEEEE-EeCCCCE
Q 011916 374 SVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD-----GQTIVT-GAGDETL 446 (475)
Q Consensus 374 ~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd-----g~~l~s-~s~Dg~I 446 (475)
.... ...+.+++.+|||+.+++ + .++|.+||+++.+.+..++||.++|.+++|-.+ |.++.+ +..+..+
T Consensus 139 ~~~~~~~~~~sl~is~D~~~l~~--a--s~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i 214 (541)
T KOG4547|consen 139 IWKEQKPLVSSLCISPDGKILLT--A--SRQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGI 214 (541)
T ss_pred eeccCCCccceEEEcCCCCEEEe--c--cceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccce
Confidence 8864 456899999999999988 3 578999999999999999999999999999876 666665 4556678
Q ss_pred EEEecCCCCCCCC
Q 011916 447 RFWNVFPSLKAPA 459 (475)
Q Consensus 447 ~iW~~~~~~~~~~ 459 (475)
.+|-+....+.+.
T Consensus 215 ~~w~v~~~~kkks 227 (541)
T KOG4547|consen 215 TVWVVEKEDKKKS 227 (541)
T ss_pred eEEEEEcccccch
Confidence 9999987655544
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-10 Score=114.46 Aligned_cols=280 Identities=14% Similarity=0.167 Sum_probs=198.2
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCC------------CEEEEEeCCCeEEEEEC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREG------------SYISVGTNLGQVQVWDG 238 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg------------~~la~g~~dg~v~iwd~ 238 (475)
.++++|++..++|.|..+.|.+-|..+-+.++.++ .|...|+.|.|.|.. -.||++.-.|.|.+||.
T Consensus 18 ~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~ 96 (1062)
T KOG1912|consen 18 RNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF 96 (1062)
T ss_pred ccccccCccceEEEecCceEEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe
Confidence 57799999999999999999999999999888887 577999999998731 25677777899999999
Q ss_pred CCCeeeEEecCCCCceEEEEe-----CC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEe
Q 011916 239 TQCKRVRTFGGHQTRAGVLAW-----NS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGG 311 (475)
Q Consensus 239 ~~~~~~~~~~~h~~~v~~l~~-----~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~ 311 (475)
..+..+..+..|...+..++| +. +.|++-.....|.+|+..+ +...-+.........|+.+.| |.+.+..-+
T Consensus 97 ~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt-G~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 97 VLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT-GEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred hhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC-CceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 999999999999999999999 22 6788888889999999884 444444444445567789988 777777777
Q ss_pred CCCcEEEEECCC-------CceeEEEecccc-------------------------ceeEEEECCCCCcEEEEecCCCCC
Q 011916 312 NDNQLLVWNQHS-------QQPTLRLTEHTA-------------------------AVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 312 ~Dg~I~iwd~~~-------~~~~~~~~~h~~-------------------------~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
..|.|.+.+.-. ++..+.-..|.. ....++|+|.-++++... ..+
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~---~pr 252 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT---FPR 252 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE---ecc
Confidence 778888877532 222332222222 012356788877666654 689
Q ss_pred eEEEEECCCCceeeeecCC-CCeeEEEEcCCCC--eEEEEEecCCCeEEEEECCC----------------CceEEEecC
Q 011916 360 CIRFWNTSNGHQLNSVDTG-SQVCNLAWSKNVN--ELVSTHGYSQNQIMVWKYPS----------------MAKVSTLTG 420 (475)
Q Consensus 360 ~I~iwd~~~~~~~~~~~~~-~~v~~l~~s~~~~--~l~~~~g~~dg~I~iwd~~~----------------~~~~~~l~~ 420 (475)
.+.++|++-..++..+... +.+.-+.|-|+++ .|++ ...+|.+.+|-.+. ++++..+..
T Consensus 253 ellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~Lfc--lH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~ 330 (1062)
T KOG1912|consen 253 ELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFC--LHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRP 330 (1062)
T ss_pred ceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEE--EecCCeEEEEEeeccCccccccchhhccccccceEEEee
Confidence 9999999988888887533 4455566666665 4555 77899999997543 111111111
Q ss_pred -CCcceEEEEECCC-CCEEEEEeCCCCEEEEecCCCCCC
Q 011916 421 -HSLRVLYLATSPD-GQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 421 -h~~~V~~l~~spd-g~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
.+.++...+..|. ...++.--.+|.+.+|.+..+...
T Consensus 331 m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 331 MEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred chhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 1222333344454 344444556788899999865543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-09 Score=114.84 Aligned_cols=276 Identities=14% Similarity=0.212 Sum_probs=177.3
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEE----ECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC----
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLW----TASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT---- 239 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw----~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~---- 239 (475)
.+..+++-++ .++++..+|.|.+. +..+..+...-. -+..|.+++||||+..|+..+.+|+|.+-.-.
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~--vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i 154 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS--VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPI 154 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE--EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEE
Confidence 4555777665 57777789999999 666655444332 35789999999999999999999998875411
Q ss_pred -----------C--------CeeeEEecC------------------------CCCceEEEEe--CCCEEEEEeC-----
Q 011916 240 -----------Q--------CKRVRTFGG------------------------HQTRAGVLAW--NSRILSSGSR----- 269 (475)
Q Consensus 240 -----------~--------~~~~~~~~~------------------------h~~~v~~l~~--~~~~l~sgs~----- 269 (475)
. |+...+|.| +...-..++| ||.++++.+.
T Consensus 155 ~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~ 234 (928)
T PF04762_consen 155 SEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG 234 (928)
T ss_pred EEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC
Confidence 0 122222221 2224456889 6788888764
Q ss_pred -CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCC---ceeEEEeccccceeEEEE
Q 011916 270 -DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN---DNQLLVWNQHSQ---QPTLRLTEHTAAVKAIAW 342 (475)
Q Consensus 270 -dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~---Dg~I~iwd~~~~---~~~~~~~~h~~~v~~l~~ 342 (475)
-+.++||+-+ +........-.+--.+++|-|.|+++|+.-. ...|.+|.-+.. +....+......|..++|
T Consensus 235 ~~R~iRVy~Re--G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~W 312 (928)
T PF04762_consen 235 SRRVIRVYSRE--GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAW 312 (928)
T ss_pred ceeEEEEECCC--ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEE
Confidence 2578999875 3433333333344457899999999998764 345667764322 212222235678999999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCce--eeeec--CCCCeeEEEEcCCCCe-EEEEEecCCCeEEEEECC----CC-
Q 011916 343 SPHQSSLLASGGGTADRCIRFWNTSNGHQ--LNSVD--TGSQVCNLAWSKNVNE-LVSTHGYSQNQIMVWKYP----SM- 412 (475)
Q Consensus 343 sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~--~~~~~--~~~~v~~l~~s~~~~~-l~~~~g~~dg~I~iwd~~----~~- 412 (475)
++++..|++.. ...|.+|-..+..- .+.+. ....+..+.|+|.... |.+ ...+|.+..+++. .+
T Consensus 313 n~ds~iLAv~~----~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v--~t~~g~~~~~~~~~~v~~s~ 386 (928)
T PF04762_consen 313 NSDSEILAVWL----EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHV--LTSNGQYEIYDFAWDVSRSP 386 (928)
T ss_pred CCCCCEEEEEe----cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEE--EecCCcEEEEEEEEEEEecC
Confidence 99999655543 34499999887642 22232 3344566999996544 444 3344665554431 10
Q ss_pred -------ceEEEec-----------------------CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 413 -------AKVSTLT-----------------------GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 413 -------~~~~~l~-----------------------~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
..+..+. .-...|.+++|++++..+++-..||.|.+|......
T Consensus 387 ~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~ 459 (928)
T PF04762_consen 387 GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN 459 (928)
T ss_pred CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence 0111111 124679999999999889999999999999976544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.9e-09 Score=105.05 Aligned_cols=264 Identities=15% Similarity=0.093 Sum_probs=171.1
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEE
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVC-SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGV 256 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~-~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 256 (475)
.+.+++++.++.|+.+|..+|+..-...++. .+. .+. .++..+++++.+|.|..+|..+++.+............
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~--~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 140 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDE--RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP 140 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCC--CcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC
Confidence 4567777778999999999998765544322 221 222 25678889999999999999999988776533322222
Q ss_pred EEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCE-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe
Q 011916 257 LAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEV-----CGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT 331 (475)
Q Consensus 257 l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~ 331 (475)
....+..++.++.++.|..+|.+ .++.+-........+ .+... .+..++.+..++.+..+|.++++.+....
T Consensus 141 p~v~~~~v~v~~~~g~l~a~d~~-tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~ 217 (377)
T TIGR03300 141 PLVANGLVVVRTNDGRLTALDAA-TGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQR 217 (377)
T ss_pred CEEECCEEEEECCCCeEEEEEcC-CCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence 23356678888899999999998 444444333222111 11111 23477788888999999999998766543
Q ss_pred cccc----c------e-eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 332 EHTA----A------V-KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 332 ~h~~----~------v-~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
.... . + ....+ .+..++++. .++.++.||..+|+.+........ .... ..+..+++ +..
T Consensus 218 ~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~~~~-~~p~--~~~~~vyv--~~~ 287 (377)
T TIGR03300 218 VALPKGRTELERLVDVDGDPVV--DGGQVYAVS---YQGRVAALDLRSGRVLWKRDASSY-QGPA--VDDNRLYV--TDA 287 (377)
T ss_pred cccCCCCCchhhhhccCCccEE--ECCEEEEEE---cCCEEEEEECCCCcEEEeeccCCc-cCce--EeCCEEEE--ECC
Confidence 1100 0 0 11111 234455543 689999999999998877653321 1222 24567777 668
Q ss_pred CCeEEEEECCCCceEEEecCCCc-ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 401 QNQIMVWKYPSMAKVSTLTGHSL-RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 401 dg~I~iwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
+|.|+.+|..+++.+........ ....... .+..|++++.||.|+++|..+++.....
T Consensus 288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 99999999999987765532211 1222222 4668899999999999999888766543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=120.04 Aligned_cols=187 Identities=19% Similarity=0.283 Sum_probs=148.2
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCc-----EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDS-----VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~-----V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.|-..+++.+..++.+.+||...+.+..... +.+. ..-+.++++.-++++|+--|.|.+|+....+.-..+.
T Consensus 95 l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~--~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~ 172 (967)
T KOG0974|consen 95 LFEENKKIALVTSRNSLLIRDSKNSSVLSKIQ--SDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK 172 (967)
T ss_pred hhhhcceEEEEEcCceEEEEecccCceehhcC--CCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence 45555678888899999999998887655543 2222 1223346677799999999999999987444444688
Q ss_pred CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 249 GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 249 ~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
+|.+.+..+.| +|+++++.+.|.++++|++...........+|...|..+.|.|+ .+++++.|-+.++|+.... .
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~-~ 249 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT-Q 249 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccc-e
Confidence 99999999999 79999999999999999999655555577889999999999988 9999999999999976543 4
Q ss_pred eEEEeccc-cceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 327 TLRLTEHT-AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 327 ~~~~~~h~-~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
+..+.+|. ..+..++..+... ++.+++ .|+.+++|++..
T Consensus 250 l~~y~~h~g~~iw~~~~~~~~~-~~vT~g--~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 250 LEVYDEHSGKGIWKIAVPIGVI-IKVTGG--NDSTLKLWDLNG 289 (967)
T ss_pred ehhhhhhhhcceeEEEEcCCce-EEEeec--cCcchhhhhhhc
Confidence 44777775 4588888888776 666665 899999999754
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.8e-09 Score=104.49 Aligned_cols=255 Identities=14% Similarity=0.082 Sum_probs=163.5
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCce---
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRA--- 254 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v--- 254 (475)
.+.+++++.++.|+.+|..+|+..-.... .+.+.+.-.. .+..+++++.+|.|..||.++++.+..+......+
T Consensus 105 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDAEDGKELWRAKL--SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEeeeecc--CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 45677777799999999999987655443 2333221111 35578888889999999999999887765433221
Q ss_pred --EEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecC-cc---CCE---EEEEEcC--CCCEEEEEeCCCcEEEEECCC
Q 011916 255 --GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAG-HK---SEV---CGLKWSH--DDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 255 --~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-h~---~~V---~~l~~s~--~~~~lasg~~Dg~I~iwd~~~ 323 (475)
......+..++.+..++.+..+|.+. ++.+-.... .. ..+ ..+.-+| .+..+++++.+|.++.||..+
T Consensus 182 ~~~sp~~~~~~v~~~~~~g~v~ald~~t-G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~t 260 (377)
T TIGR03300 182 GSASPVIADGGVLVGFAGGKLVALDLQT-GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRS 260 (377)
T ss_pred CCCCCEEECCEEEEECCCCEEEEEEccC-CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCC
Confidence 11122345778888899999999874 333322110 00 000 0010011 355788888899999999999
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCC-CeeEEEEcCCCCeEEEEEecCC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGS-QVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~-~v~~l~~s~~~~~l~~~~g~~d 401 (475)
++.+...... ....... .+..+++.. .++.+..+|..+|+.+.... ... ....... .+..+++ +..+
T Consensus 261 G~~~W~~~~~--~~~~p~~--~~~~vyv~~---~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~--~~~~ 329 (377)
T TIGR03300 261 GRVLWKRDAS--SYQGPAV--DDNRLYVTD---ADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVV--GDFE 329 (377)
T ss_pred CcEEEeeccC--CccCceE--eCCEEEEEC---CCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEE--EeCC
Confidence 9877765421 1122222 344455532 69999999999999887652 222 2222222 3567777 7789
Q ss_pred CeEEEEECCCCceEEEecCCCcceE-EEEECCCCCEEEEEeCCCCEEEE
Q 011916 402 NQIMVWKYPSMAKVSTLTGHSLRVL-YLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 402 g~I~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
|.|+++|..+++.+..++.+...+. ..++. + ..|+.++.||.|+.|
T Consensus 330 G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 330 GYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 9999999999999988886664432 22332 3 358888999998876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-08 Score=99.12 Aligned_cols=262 Identities=13% Similarity=0.184 Sum_probs=178.7
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCC-cEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC-CCCceEEEEeCC--
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGD-SVC-SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG-HQTRAGVLAWNS-- 261 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~-~V~-~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~-h~~~v~~l~~~~-- 261 (475)
.+.+.+||..++.++..+...... ... -+.|+.+.+|+|--.. ..++|+++...-....+.. ....+...+|.+
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 346999999999988877642221 233 6789999888876543 4799999722111111111 124566666643
Q ss_pred --CEEEE-----EeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe-----------CCCcEEEEECCC
Q 011916 262 --RILSS-----GSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG-----------NDNQLLVWNQHS 323 (475)
Q Consensus 262 --~~l~s-----gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-----------~Dg~I~iwd~~~ 323 (475)
..|+. ++..+++++|.+. ....+....-....=+.+.|.+.|++|++-- ....++|+++..
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp-~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e 264 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIP-KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE 264 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEcc-CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc
Confidence 23332 3567889999997 4444444333444557899999999776521 125688888874
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec--CC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY--SQ 401 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~--~d 401 (475)
... .......++|...+|.|+++.+.++. |..+-.+.++|++.. +...-....-..+.|+|.+++++++ |. ..
T Consensus 265 ~~i-~V~~~~~~pVhdf~W~p~S~~F~vi~-g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~a-gF~nl~ 339 (561)
T COG5354 265 RSI-PVEKDLKDPVHDFTWEPLSSRFAVIS-GYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFA-GFDNLQ 339 (561)
T ss_pred ccc-ceeccccccceeeeecccCCceeEEe-cccccceeecccccc--eEEecCCcccccccccCcccEEEEe-cCCccc
Confidence 432 23225689999999999999877766 568999999999876 4444455556778899999999885 43 45
Q ss_pred CeEEEEECCCCceEE-EecCCCcceEEEEECCCCCEEEEEeC------CCCEEEEecCCCCCC
Q 011916 402 NQIMVWKYPSMAKVS-TLTGHSLRVLYLATSPDGQTIVTGAG------DETLRFWNVFPSLKA 457 (475)
Q Consensus 402 g~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~s~s~------Dg~I~iW~~~~~~~~ 457 (475)
|.|.+||....-.+. .+.+.. ...+.|+|||+++.+... |..|.||++......
T Consensus 340 gni~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 340 GNIEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred cceEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 789999987765554 555433 345789999999887643 778999999876544
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.7e-10 Score=100.74 Aligned_cols=224 Identities=17% Similarity=0.204 Sum_probs=152.9
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEee-CC-CC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEecCCCCc
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCD-LG-PG---DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--RTFGGHQTR 253 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~-~~-~~---~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--~~~~~h~~~ 253 (475)
++-+-..|+|.++..........+. +. .. ....++.|++.+..++++-.+|.+.+-+....... +.++.|.-.
T Consensus 88 l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E 167 (339)
T KOG0280|consen 88 LLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE 167 (339)
T ss_pred eeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee
Confidence 4444557888888765543322222 11 11 12457889999999999999999997665555444 478899999
Q ss_pred eEEEEe---CCCEEEEEeCCCcEEEEECCCCCccEEE-ecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CCcee
Q 011916 254 AGVLAW---NSRILSSGSRDRNILQHDLRVSSDYICK-LAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH-SQQPT 327 (475)
Q Consensus 254 v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~-~~~~~ 327 (475)
++...| +++++.+|+.|+.+..||+|.++..+.. .+-|...|++|.-+| .+.++++|+.|-.|++||.+ .++++
T Consensus 168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl 247 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPL 247 (339)
T ss_pred eeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCcc
Confidence 999988 4789999999999999999966665554 667999999999887 67899999999999999999 45666
Q ss_pred EEEeccccceeEEEECCCCCc-EEEEecCCCCCeEEEEECCCCcee-----eee-cCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 328 LRLTEHTAAVKAIAWSPHQSS-LLASGGGTADRCIRFWNTSNGHQL-----NSV-DTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~-ll~sg~Gs~d~~I~iwd~~~~~~~-----~~~-~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
..-. -.+.|..+.++|.-.. +++++ .-+-.+|.+...+... ... .+.+-+..-.|......++++ .+-
T Consensus 248 ~~~~-v~GGVWRi~~~p~~~~~lL~~C---Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATC-sFY 322 (339)
T KOG0280|consen 248 FKAK-VGGGVWRIKHHPEIFHRLLAAC---MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATC-SFY 322 (339)
T ss_pred ccCc-cccceEEEEecchhhhHHHHHH---HhcCceEEEecccccchheeeeccccccceeeccccccccceeeee-ecc
Confidence 5433 4588999999996543 33332 4455667766554322 111 234445555664443445543 444
Q ss_pred CCeEE-EEEC
Q 011916 401 QNQIM-VWKY 409 (475)
Q Consensus 401 dg~I~-iwd~ 409 (475)
|+.|+ +|-.
T Consensus 323 Dk~~~~~Wl~ 332 (339)
T KOG0280|consen 323 DKKIRQLWLH 332 (339)
T ss_pred ccceeeeeee
Confidence 55533 6643
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.1e-11 Score=128.94 Aligned_cols=184 Identities=13% Similarity=0.233 Sum_probs=153.0
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW 259 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~ 259 (475)
..++++.||.|++|....++.+..+.......|+.+.|+.+|+.+.++..||.+.+|.+. .+.....+.|......+.|
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~F 2300 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRF 2300 (2439)
T ss_pred eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceee
Confidence 578889999999999999988887776555899999999999999999999999999977 6677777889999999999
Q ss_pred CCCEEEEEe---CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccc
Q 011916 260 NSRILSSGS---RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAA 336 (475)
Q Consensus 260 ~~~~l~sgs---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~ 336 (475)
-+..+++++ .++.+.+||.-.....-..-..|.+.++++++-|..+.|++||.+|.|++||++..+.++.+..
T Consensus 2301 i~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---- 2376 (2439)
T KOG1064|consen 2301 IGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---- 2376 (2439)
T ss_pred eehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----
Confidence 778888775 5789999998655544333488999999999999999999999999999999998877766553
Q ss_pred eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC
Q 011916 337 VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377 (475)
Q Consensus 337 v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~ 377 (475)
+. . +..+++|+ ..|.|+||++.....++.+..
T Consensus 2377 -----~~-~-~~~f~~~s--s~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 -----LD-T-REYFVTGS--SEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred -----hh-h-hheeeccC--cccceEEEEccccchhhcCch
Confidence 33 3 33566654 999999999988877776643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-10 Score=113.45 Aligned_cols=230 Identities=15% Similarity=0.246 Sum_probs=165.1
Q ss_pred CCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---------------eeEEecCCCCceEEEEeCC--CEEEEEe
Q 011916 206 LGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK---------------RVRTFGGHQTRAGVLAWNS--RILSSGS 268 (475)
Q Consensus 206 ~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~---------------~~~~~~~h~~~v~~l~~~~--~~l~sgs 268 (475)
+.......|++|+....++|+|+.||.++|..+.+.. .-+++.||...|..+.||. ..|.+..
T Consensus 11 iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 3556778899999999999999999999999876421 1245779999999999974 7889999
Q ss_pred CCCcEEEEECCCCCccEE-EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-EEEeccccceeEEEECCCC
Q 011916 269 RDRNILQHDLRVSSDYIC-KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT-LRLTEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 269 ~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~-~~~~~h~~~v~~l~~sp~~ 346 (475)
.+|.|.+|-+-...-+.. .-...++-|.+++|+.||..++....||.|.+=.+...+.- ..+++ .....+.|++|.
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~hv~ws~D~ 168 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAHVLWSEDL 168 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch--heccceeecccH
Confidence 999999998863322111 12234567999999999999999999999988766543311 11111 123478999999
Q ss_pred CcEEEEecCCCCCeEEEEECCCC-------ceeeee-----cCCCCeeEEEEc--------CCCCeEEEEEecCCCeEEE
Q 011916 347 SSLLASGGGTADRCIRFWNTSNG-------HQLNSV-----DTGSQVCNLAWS--------KNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~-------~~~~~~-----~~~~~v~~l~~s--------~~~~~l~~~~g~~dg~I~i 406 (475)
+.+++ +-..|.+++||.... .+.... ..+..+..+.|. |+...+++ ++.+|.+.|
T Consensus 169 ~~~Lf---~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav--cy~nGr~Qi 243 (1189)
T KOG2041|consen 169 EQALF---KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV--CYANGRMQI 243 (1189)
T ss_pred HHHHh---hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE--EEcCceehh
Confidence 97777 347899999997643 121111 123346667775 46777888 889999998
Q ss_pred EECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 407 WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 407 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
..-.+......+. -.-.|.+..|+++|..|+.++.|
T Consensus 244 MR~eND~~Pvv~d-tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 244 MRSENDPEPVVVD-TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred hhhcCCCCCeEEe-cccEeecceecCCCcEEEEccCc
Confidence 8765543333332 22678899999999999998765
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.4e-09 Score=100.65 Aligned_cols=281 Identities=14% Similarity=0.183 Sum_probs=190.0
Q ss_pred CCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-----------CCeEEE
Q 011916 168 DFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-----------LGQVQV 235 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-----------dg~v~i 235 (475)
..--+-+.|||. ..|+.-.-..|.+|--.+-...+.+ .|. .|.-+.|||..+||++=+. ...+.|
T Consensus 210 nWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF--~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 210 NWTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRF--YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred cceeeeEEecCCceEEEEEeccceeeecCccHHHHHhc--cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 344556899997 4555556778999976665544444 443 5888999999999998543 246999
Q ss_pred EECCCCeeeEEecCCCC--ceE-EEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE
Q 011916 236 WDGTQCKRVRTFGGHQT--RAG-VLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG 310 (475)
Q Consensus 236 wd~~~~~~~~~~~~h~~--~v~-~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg 310 (475)
||+.+|...+.+..... .+. -+.| ++.++|--.. ..|.||+... -.++..-.-.-..|....|+|.++.||.-
T Consensus 287 WDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps-f~lld~Kslki~gIr~FswsP~~~llAYw 364 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNLLAYW 364 (698)
T ss_pred EEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc-eeeecccccCCccccCcccCCCcceEEEE
Confidence 99999999988875222 222 2345 5677776655 6788988762 22222222233568889999999998875
Q ss_pred eCC-----CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCC-------CCCeEEEEECCCCc-eeeeecC
Q 011916 311 GND-----NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT-------ADRCIRFWNTSNGH-QLNSVDT 377 (475)
Q Consensus 311 ~~D-----g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs-------~d~~I~iwd~~~~~-~~~~~~~ 377 (475)
... ..+.+-.+.+++.+.+..-|.-.=..+.|-..|.+|.+-.... .-..+.|+.++... ++..++.
T Consensus 365 tpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel 444 (698)
T KOG2314|consen 365 TPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL 444 (698)
T ss_pred cccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec
Confidence 432 2466777777776666555555556788888888776532100 11235566655433 4556677
Q ss_pred CCCeeEEEEcCCCCeEEEEEecC-CCeEEEEECCC-C---ceEEEecCCCcceEEEEECCCCCEEEEEe---CCCCEEEE
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYS-QNQIMVWKYPS-M---AKVSTLTGHSLRVLYLATSPDGQTIVTGA---GDETLRFW 449 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~-~---~~~~~l~~h~~~V~~l~~spdg~~l~s~s---~Dg~I~iW 449 (475)
...|..++|-|.|+.+++.+|.. ..++.+|.+.+ . +.+..+. ....+.+.|+|.|++++.++ ..|.+.++
T Consensus 445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 88899999999999999987754 35788898873 2 2233332 24467899999999998764 47899999
Q ss_pred ecCCCC
Q 011916 450 NVFPSL 455 (475)
Q Consensus 450 ~~~~~~ 455 (475)
|+....
T Consensus 523 D~~~a~ 528 (698)
T KOG2314|consen 523 DTDYAD 528 (698)
T ss_pred ecchhh
Confidence 998533
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.5e-08 Score=109.17 Aligned_cols=236 Identities=13% Similarity=0.140 Sum_probs=158.1
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEecC--CC------------CceEEEEeC--CCEEEEE-eCCCcEE
Q 011916 213 CSVQWTRE-GSYISVGTNLGQVQVWDGTQCKRVRTFGG--HQ------------TRAGVLAWN--SRILSSG-SRDRNIL 274 (475)
Q Consensus 213 ~~v~~spd-g~~la~g~~dg~v~iwd~~~~~~~~~~~~--h~------------~~v~~l~~~--~~~l~sg-s~dg~I~ 274 (475)
..++++++ +.++++-+.++.|++||... +.+..+.+ .. .....++++ ++.|+++ ..++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 36788874 56666767788999999764 44444332 11 124567774 4555554 4557788
Q ss_pred EEECCCCCccEEEecCc-----------------cCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEecc---
Q 011916 275 QHDLRVSSDYICKLAGH-----------------KSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEH--- 333 (475)
Q Consensus 275 iwd~~~~~~~~~~~~~h-----------------~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h--- 333 (475)
++|... ..+..+.+. -..-.++++++ ++.++++...++.|++||..++... .+.+.
T Consensus 650 ~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~ 726 (1057)
T PLN02919 650 EIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYE 726 (1057)
T ss_pred EEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcc
Confidence 898863 223333210 11235799999 5666677777889999998876432 22110
Q ss_pred ------------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------------C--------CC
Q 011916 334 ------------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--------------T--------GS 379 (475)
Q Consensus 334 ------------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--------------~--------~~ 379 (475)
-.....|+++|++..|+++.. .++.|++||+.++....... . -.
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 123467999999998888765 78999999998765321110 0 01
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-------------CCCcceEEEEECCCCCEEEEEeCCCCE
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-------------GHSLRVLYLATSPDGQTIVTGAGDETL 446 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-------------~h~~~V~~l~~spdg~~l~s~s~Dg~I 446 (475)
....++++++|+.+++ ...++.|++||..++....... +.-.....|+++++|+.+++-+.++.|
T Consensus 805 ~P~Gvavd~dG~LYVA--Ds~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~I 882 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVA--DSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLI 882 (1057)
T ss_pred CCceeeEeCCCcEEEE--ECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEE
Confidence 2468899999987666 6788999999998765543221 112357889999999999988899999
Q ss_pred EEEecCCCCC
Q 011916 447 RFWNVFPSLK 456 (475)
Q Consensus 447 ~iW~~~~~~~ 456 (475)
++||+.++..
T Consensus 883 rvid~~~~~~ 892 (1057)
T PLN02919 883 RYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCcc
Confidence 9999987654
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-09 Score=95.89 Aligned_cols=272 Identities=15% Similarity=0.264 Sum_probs=174.4
Q ss_pred ceeEEecCCC-CEEEEE-cCCeEEEEECCCCc-----EEEEee-----------CCCCCcEEEEEEcCCC--CEEEEEeC
Q 011916 170 YLNLVDWSSQ-NVLAVG-LGTCVYLWTASNSK-----VTRLCD-----------LGPGDSVCSVQWTREG--SYISVGTN 229 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~-~~~~V~lw~~~~~~-----~~~~~~-----------~~~~~~V~~v~~spdg--~~la~g~~ 229 (475)
-+.++.|... ..||+| .+|.|.++.-+... ....++ +.-...|..+.|.+++ ..++..+.
T Consensus 27 iis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 27 IISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred ceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 3566777643 455555 58899998654322 111111 1123578899999865 47788889
Q ss_pred CCeEEEEECCCCee-----------------------------------eEEe-cCCCCceEEEEeCC-CEEEEEeCCCc
Q 011916 230 LGQVQVWDGTQCKR-----------------------------------VRTF-GGHQTRAGVLAWNS-RILSSGSRDRN 272 (475)
Q Consensus 230 dg~v~iwd~~~~~~-----------------------------------~~~~-~~h~~~v~~l~~~~-~~l~sgs~dg~ 272 (475)
|.+|++|.+..... .+.+ ..|.--|.++++|. ...+....|=.
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLR 186 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLR 186 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecccee
Confidence 99999998643110 0111 25677788888853 33344456788
Q ss_pred EEEEECCCCCccEE--EecCcc-----CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce------eE----------
Q 011916 273 ILQHDLRVSSDYIC--KLAGHK-----SEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQP------TL---------- 328 (475)
Q Consensus 273 I~iwd~~~~~~~~~--~~~~h~-----~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~------~~---------- 328 (475)
|.+|++....+... -++.+. .-|++..|+| ..+.++..+..|+|++.|++.... +.
T Consensus 187 INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rs 266 (433)
T KOG1354|consen 187 INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRS 266 (433)
T ss_pred eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchh
Confidence 99999876554332 233332 4588899999 456888888899999999984321 11
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCC-CeEEEEECC-CCceeeeecCC-------------C---CeeEEEEcCCC
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTAD-RCIRFWNTS-NGHQLNSVDTG-------------S---QVCNLAWSKNV 390 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d-~~I~iwd~~-~~~~~~~~~~~-------------~---~v~~l~~s~~~ 390 (475)
-|.+--..|..+.|++.|+++++ .| -+|++||+. ..+++..+... . .-..++|+-++
T Consensus 267 ffseiIsSISDvKFs~sGryils-----RDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 267 FFSEIISSISDVKFSHSGRYILS-----RDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred hHHHHhhhhhceEEccCCcEEEE-----eccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 11222356889999999998887 45 889999994 45555544311 1 23557899888
Q ss_pred CeEEEEEecCCCeEEEEECCCCceE-EEec--------------------C-------------CCcceEEEEECCCCCE
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKV-STLT--------------------G-------------HSLRVLYLATSPDGQT 436 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~-~~l~--------------------~-------------h~~~V~~l~~spdg~~ 436 (475)
.++++ |+-.+.+++|+...+... .++. + ....++..+|+|....
T Consensus 342 ~~v~T--Gsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ 419 (433)
T KOG1354|consen 342 SYVMT--GSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENS 419 (433)
T ss_pred ceEec--ccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccce
Confidence 89888 888999999995433210 0000 1 0123566789999888
Q ss_pred EEEEeCCCCEEEE
Q 011916 437 IVTGAGDETLRFW 449 (475)
Q Consensus 437 l~s~s~Dg~I~iW 449 (475)
+|.++.. .++||
T Consensus 420 ia~aatn-nlyif 431 (433)
T KOG1354|consen 420 IAVAATN-NLYIF 431 (433)
T ss_pred eeeeecC-ceEEe
Confidence 8887665 45554
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-10 Score=123.90 Aligned_cols=197 Identities=15% Similarity=0.260 Sum_probs=154.3
Q ss_pred CCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 011916 251 QTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL 328 (475)
Q Consensus 251 ~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~ 328 (475)
-..|.++.-++ .+.++|+.||.|++|........+.--......|+.+.|+.+|+.+..+..||.+.+|... .++..
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~ 2286 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYT 2286 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cccee
Confidence 34455555443 5789999999999999875554444444445889999999999999999999999999987 56677
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC--ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEE
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG--HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 406 (475)
..+.|.....++.|-. ..++..|..+.++.+.+||..-. .-+....|.+.++++++.|..+.|++ |+.+|.|++
T Consensus 2287 s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllis--ggr~G~v~l 2362 (2439)
T KOG1064|consen 2287 SWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLIS--GGRKGEVCL 2362 (2439)
T ss_pred ccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEe--cCCcCcEEE
Confidence 7788999999998876 43555555556789999997533 22222568889999999999999999 999999999
Q ss_pred EECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCccc
Q 011916 407 WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 407 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
||++..+....++. +. ...++++|+..|.|+||++...........
T Consensus 2363 ~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2363 FDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred eehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 99998877766653 44 567899999999999999988766665443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.6e-08 Score=96.69 Aligned_cols=214 Identities=8% Similarity=0.005 Sum_probs=135.3
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCE-EEEEeCC---CeEEEEECCCCeeeEEecCCCCceEEEEe--CC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSY-ISVGTNL---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NS 261 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~-la~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~ 261 (475)
..|++-|.+......+.. + +.+....|+|||+. ++..+.+ ..|.++|+.+++...... ..+......| +|
T Consensus 169 ~~l~~~d~dg~~~~~~~~-~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVK-G--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCceeEEcc-C--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 477787776665443432 2 37788999999985 6654443 468899998886655443 4444555667 56
Q ss_pred CEEE-EEeCC--CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEecccc
Q 011916 262 RILS-SGSRD--RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N--QLLVWNQHSQQPTLRLTEHTA 335 (475)
Q Consensus 262 ~~l~-sgs~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g--~I~iwd~~~~~~~~~~~~h~~ 335 (475)
+.|+ +.+.+ ..|.++|+.. + ....+..+........|+|||+.|+..+.. + .|++.|+.+++....... ..
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~-g-~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~ 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNT-K-TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCC-C-cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC
Confidence 5444 44444 4577777753 3 344454444434456899999988877643 2 688889987765333221 11
Q ss_pred ceeEEEECCCCCcEEEEecCCC-----C-CeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC-CeEEEEE
Q 011916 336 AVKAIAWSPHQSSLLASGGGTA-----D-RCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ-NQIMVWK 408 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~-----d-~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d-g~I~iwd 408 (475)
....|+|+|+.++.+..... . ..|.+.|+.++....... ........|+|||+.++.+..... ..|.+++
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~ 398 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIR 398 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-CCCcCCeEECCCCCEEEEEEccCCcEEEEEEe
Confidence 13589999999988864110 1 478999998886543333 334446899999999887643322 2466667
Q ss_pred CCC
Q 011916 409 YPS 411 (475)
Q Consensus 409 ~~~ 411 (475)
+..
T Consensus 399 l~g 401 (419)
T PRK04043 399 LNY 401 (419)
T ss_pred cCC
Confidence 644
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2e-10 Score=111.87 Aligned_cols=205 Identities=18% Similarity=0.301 Sum_probs=156.9
Q ss_pred eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCc------cEEEecCccCCEEEEEEcCCCCEEEEEeCCCc
Q 011916 244 VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSD------YICKLAGHKSEVCGLKWSHDDRELASGGNDNQ 315 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~ 315 (475)
+..+.||+..|..++- |.+-+++++.|++|++|.++..+. +..++..|+..|.++.|-.+-++++++ ||.
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 4467799999988876 568999999999999999985442 456788999999999999988888775 688
Q ss_pred EEEEECCCCceeEEEec--cccceeEEEECCC-CCcEEEEecCCCCCeEEEEECCCCceeeeec------CCCCeeEEEE
Q 011916 316 LLVWNQHSQQPTLRLTE--HTAAVKAIAWSPH-QSSLLASGGGTADRCIRFWNTSNGHQLNSVD------TGSQVCNLAW 386 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~-~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~------~~~~v~~l~~ 386 (475)
|.+||.--++++.++.. ..+.+..+..-++ .+.++..| .+...+++++|.+.++-...+. ...-+.+++.
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-csaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV 884 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-CSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV 884 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEecccCcchheeee-ccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence 99999887777654432 2344445554444 34455554 3589999999999887665553 2355899999
Q ss_pred cCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEE-EecCCC
Q 011916 387 SKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF-WNVFPS 454 (475)
Q Consensus 387 s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i-W~~~~~ 454 (475)
.+.|+.+++ +-++|.|.+.|.+++..+..+.........++ .|..+.|+....|.++.+ |.--.+
T Consensus 885 a~~GN~lAa--~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 885 ADKGNKLAA--ALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred ccCcchhhH--HhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC
Confidence 999999999 88999999999999998888776666666665 356677888888888888 765544
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=7e-08 Score=97.33 Aligned_cols=197 Identities=13% Similarity=0.034 Sum_probs=125.7
Q ss_pred CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE-EEEEeCC---CcEEEEECCCCceeEEEeccccceeEEEECCCC
Q 011916 271 RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE-LASGGND---NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~-lasg~~D---g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 346 (475)
..|.+-|.. +...+.+.... .+....|+|||+. ++..+.+ ..|+++|+.+++.... ....+......|+|||
T Consensus 169 ~~l~~~d~d--g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l-t~~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYT--LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI-ASSQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCC--CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE-ecCCCcEEeeEECCCC
Confidence 455565654 22233333333 7788999999984 6654433 4699999988865443 3355666778899999
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC-CeEEEEECCCCceEEEecCCCcce
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ-NQIMVWKYPSMAKVSTLTGHSLRV 425 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d-g~I~iwd~~~~~~~~~l~~h~~~V 425 (475)
+.++.+.....+..|.++|+.+++...............|+|||+.|+.++...+ ..|+++|+.+++....... ..
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-- 321 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-- 321 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC--
Confidence 9888776433456799999988875544334433456789999999888643222 2788889987765332221 11
Q ss_pred EEEEECCCCCEEEEEeCC---------CCEEEEecCCCCCCCCcc---cCCccccccCccc
Q 011916 426 LYLATSPDGQTIVTGAGD---------ETLRFWNVFPSLKAPALV---KDTSLWSLGRTHI 474 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~D---------g~I~iW~~~~~~~~~~~~---~~~~v~s~~~~~i 474 (475)
....|+|||+.|+..+.. ..|.+.++..+....... .....|+.+.+.|
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I 382 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSI 382 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEE
Confidence 124899999998876653 257777887765433221 1234566665543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.1e-07 Score=91.67 Aligned_cols=173 Identities=11% Similarity=0.082 Sum_probs=128.2
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEECCCCeeeEEecCCCC
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG-QVQVWDGTQCKRVRTFGGHQT 252 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg-~v~iwd~~~~~~~~~~~~h~~ 252 (475)
.+-.+.++++.-+-|...|.+...+-.+++ ++...|.-..+.-+++-+++|..|| .+-|+|..+++..+ +...-+
T Consensus 327 fa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv---~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSRGKAFIMRPWDGYSIQV---GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLG 402 (668)
T ss_pred hccCCCcEEEEEecCcEEEECCCCCeeEEc---CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCcc
Confidence 444556777777788888888877766554 6677799999988989999999999 89999988776544 445567
Q ss_pred ceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCce
Q 011916 253 RAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN----QLLVWNQHSQQP 326 (475)
Q Consensus 253 ~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg----~I~iwd~~~~~~ 326 (475)
.|.++.. +|..++.+.....|.+.|+. .+.....-+...+-|+.+.|+|+++++|-+--+| .|+++|+..++.
T Consensus 403 ~I~av~vs~dGK~~vvaNdr~el~vidid-ngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 403 NIEAVKVSPDGKKVVVANDRFELWVIDID-NGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ceEEEEEcCCCcEEEEEcCceEEEEEEec-CCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 7888877 57889999999999999998 4444444455667899999999999999987665 689999988764
Q ss_pred eEEEeccccceeEEEECCCCCcEEEE
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
... ....+.=.+-+|.|++++|...
T Consensus 482 y~v-TT~ta~DfsPaFD~d~ryLYfL 506 (668)
T COG4946 482 YDV-TTPTAYDFSPAFDPDGRYLYFL 506 (668)
T ss_pred EEe-cCCcccccCcccCCCCcEEEEE
Confidence 332 2222333445566666655443
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.9e-08 Score=87.22 Aligned_cols=227 Identities=10% Similarity=-0.000 Sum_probs=153.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCee-eEEecCCCCceEEE---EeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccC--
Q 011916 220 EGSYISVGTNLGQVQVWDGTQCKR-VRTFGGHQTRAGVL---AWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS-- 293 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~~~-~~~~~~h~~~v~~l---~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-- 293 (475)
...+||.|+..|...+|...+.+. ......|...|.-+ +-+..-+..++.|.++++.++....... ..|..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~---~~h~~~~ 159 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF---AVHNQNL 159 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc---eeecccc
Confidence 446899999999999999886543 33334444433322 2234556778888888888886332211 12333
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEE--EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011916 294 EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ-PTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370 (475)
Q Consensus 294 ~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~-~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~ 370 (475)
.+.++++++|++++++.+....|..|.+.... .+.. .......-.+..|+.... .+|++. .||++.|||++...
T Consensus 160 ~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~-~FAv~~--Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL-QFAVVF--QDGTCAIYDVRNMA 236 (344)
T ss_pred ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc-eEEEEe--cCCcEEEEEecccc
Confidence 37889999999999999999999999987542 2222 222344456788988776 555544 99999999998754
Q ss_pred eeeee------cCCCCeeEEEEcCCCCe--EEEEEecCCCeEEEEECCCCceEEEecC-------CC-cceEEEEECCCC
Q 011916 371 QLNSV------DTGSQVCNLAWSKNVNE--LVSTHGYSQNQIMVWKYPSMAKVSTLTG-------HS-LRVLYLATSPDG 434 (475)
Q Consensus 371 ~~~~~------~~~~~v~~l~~s~~~~~--l~~~~g~~dg~I~iwd~~~~~~~~~l~~-------h~-~~V~~l~~spdg 434 (475)
..... .+.+.+..+.|++.|.. |+. ...-+.+.+.|++++.....+.. |. ..|..-.|+.++
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~--sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFI--SEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEE--ecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCC
Confidence 33222 36788999999986653 333 44567899999998865544432 32 338888898888
Q ss_pred CEEEEEeCCCCEEEEecCCCC
Q 011916 435 QTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
..+.+.+++. +.=|++....
T Consensus 315 ~s~~v~~e~~-~ae~ni~srs 334 (344)
T KOG4532|consen 315 ESNDVKNELQ-GAEYNILSRS 334 (344)
T ss_pred cccccccchh-hheeeccccc
Confidence 8777776663 5567765443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.8e-08 Score=101.99 Aligned_cols=275 Identities=12% Similarity=0.166 Sum_probs=159.4
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
-.+..+.+-.+ .++.+..+|.|.+-|.++......-. -...|.+++|+||++.++..+..+++.+-+ .+..++..
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~--vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~E 145 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN--VDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIAE 145 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee--ccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchhc
Confidence 35666777654 57777778998888988877655432 357899999999999999999988876644 22222211
Q ss_pred ec-----CCCCceEEEEeCC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe-----CCCc
Q 011916 247 FG-----GHQTRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG-----NDNQ 315 (475)
Q Consensus 247 ~~-----~h~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-----~Dg~ 315 (475)
-. ...+....+-|.. ..-+-|+. |.....+.....+.......+.. =..|.|--||+++|+.. ....
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~-~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSE-GRQAARQKIEKEKALEQIEQDDH-KTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred cccccccccccccceecccccceeeecch-hhhcccccccccccccchhhccC-CceEEEccCCcEEEEEEEeccCCcee
Confidence 11 1122333344421 11111111 11111111101111111111222 24688999999999832 3378
Q ss_pred EEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee----cCC-CCeeEEEEcCCC
Q 011916 316 LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV----DTG-SQVCNLAWSKNV 390 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~----~~~-~~v~~l~~s~~~ 390 (475)
|+|||-+ +..-..-....+.-.+++|-|.|..+++...-+.|+.|.+|.- +|-....+ ... ..+..++|+.++
T Consensus 224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~s 301 (1265)
T KOG1920|consen 224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNS 301 (1265)
T ss_pred EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCC
Confidence 9999987 4332222223344578999999997777766566788999983 44333332 222 338999999999
Q ss_pred CeEEEEEecCCCe-EEEEECCCCce--EEEecCCCcceEEEEECCCC-CEEEEEeCCCCEEEEecC
Q 011916 391 NELVSTHGYSQNQ-IMVWKYPSMAK--VSTLTGHSLRVLYLATSPDG-QTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 391 ~~l~~~~g~~dg~-I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iW~~~ 452 (475)
..|++......+. |++|-+.+... ...+.-..... +.|+|-. ..|..-..+|...++++.
T Consensus 302 diLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 302 DILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred CceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEEE
Confidence 9999865555555 99999877543 22222222222 6777732 233333356665555543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.5e-07 Score=83.62 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=143.9
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecC
Q 011916 214 SVQWTR-EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAG 290 (475)
Q Consensus 214 ~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 290 (475)
++.|.+ ++.++++-...+.|..|+..+++... +.... ...+++ .+..|+.+...+ +.++|... +........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v~~~~~-~~~~d~~~-g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYVADSGG-IAVVDPDT-GKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEEEETTC-EEEEETTT-TEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEEEEcCc-eEEEecCC-CcEEEEeec
Confidence 678998 77777777788999999998876644 22222 444444 356666666654 45558873 332222221
Q ss_pred -----ccCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 291 -----HKSEVCGLKWSHDDRELASGGND--------NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 291 -----h~~~V~~l~~s~~~~~lasg~~D--------g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
.....+.+++.++|++.++.... |.|+.++.. ++. ..+...-...+.|+|+|+++.|+++-+ .
T Consensus 79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~~~~~~~~~pNGi~~s~dg~~lyv~ds--~ 154 (246)
T PF08450_consen 79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV-TVVADGLGFPNGIAFSPDGKTLYVADS--F 154 (246)
T ss_dssp ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE-EEEEEEESSEEEEEEETTSSEEEEEET--T
T ss_pred cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE-EEEecCcccccceEECCcchheeeccc--c
Confidence 33567899999999977776543 557888877 443 333334556789999999998888765 7
Q ss_pred CCeEEEEECCCCce-e------eeecCC-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEE
Q 011916 358 DRCIRFWNTSNGHQ-L------NSVDTG-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLA 429 (475)
Q Consensus 358 d~~I~iwd~~~~~~-~------~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~ 429 (475)
.+.|..+++..... + ..+... +....+++..+|+..++ ....+.|.+++.. ++.+..+......+++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va--~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~ 231 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVA--DWGGGRIVVFDPD-GKLLREIELPVPRPTNCA 231 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEE--EETTTEEEEEETT-SCEEEEEE-SSSSEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEE--EcCCCEEEEECCC-ccEEEEEcCCCCCEEEEE
Confidence 88999999863221 1 112222 24788999999988877 6688999999977 888888876666899999
Q ss_pred E-CCCCCEEEEE
Q 011916 430 T-SPDGQTIVTG 440 (475)
Q Consensus 430 ~-spdg~~l~s~ 440 (475)
| .++...|+..
T Consensus 232 fgg~~~~~L~vT 243 (246)
T PF08450_consen 232 FGGPDGKTLYVT 243 (246)
T ss_dssp EESTTSSEEEEE
T ss_pred EECCCCCEEEEE
Confidence 9 4675655543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.8e-07 Score=83.71 Aligned_cols=218 Identities=14% Similarity=0.114 Sum_probs=143.5
Q ss_pred CCeEEEEECCCCcEEEEeeCCC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEE
Q 011916 187 GTCVYLWTASNSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILS 265 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~-~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~ 265 (475)
++.|..||..+++..-...++. .....+. ..+++.++++++.++.|..||..+++.+..+.............+..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecccccc
Confidence 6789999999998877776532 2222221 2336677888889999999999999998887753222222355677777
Q ss_pred EEeCCCcEEEEECCCCCccEEE-ecCcc---CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccc-----
Q 011916 266 SGSRDRNILQHDLRVSSDYICK-LAGHK---SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAA----- 336 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~~~~~~-~~~h~---~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~----- 336 (475)
.++.++.|..+|.. .++..-. ..... ..........++..++.+..++.|..+|+++|+.+.........
T Consensus 81 v~~~~~~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 159 (238)
T PF13360_consen 81 VGTSDGSLYALDAK-TGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPI 159 (238)
T ss_dssp EEETTSEEEEEETT-TSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--E
T ss_pred cccceeeeEecccC-CcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcce
Confidence 78888899999987 4544444 22221 11122222234778888888999999999999998877653322
Q ss_pred -----e-eEEEECCCCCcEEEEecCCCCCe-EEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 337 -----V-KAIAWSPHQSSLLASGGGTADRC-IRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 337 -----v-~~l~~sp~~~~ll~sg~Gs~d~~-I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
+ ..+.+. ++ .++++. .++. +.+ |+.+++.+.... ...+.. .....+..|++ +..++.|..||.
T Consensus 160 ~~~~~~~~~~~~~-~~-~v~~~~---~~g~~~~~-d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~--~~~~~~l~~~d~ 229 (238)
T PF13360_consen 160 SSFSDINGSPVIS-DG-RVYVSS---GDGRVVAV-DLATGEKLWSKP-ISGIYS-LPSVDGGTLYV--TSSDGRLYALDL 229 (238)
T ss_dssp EEETTEEEEEECC-TT-EEEEEC---CTSSEEEE-ETTTTEEEEEEC-SS-ECE-CEECCCTEEEE--EETTTEEEEEET
T ss_pred eeecccccceEEE-CC-EEEEEc---CCCeEEEE-ECCCCCEEEEec-CCCccC-CceeeCCEEEE--EeCCCEEEEEEC
Confidence 1 223333 44 566654 4664 555 999999775444 333333 24567778877 447999999999
Q ss_pred CCCceEE
Q 011916 410 PSMAKVS 416 (475)
Q Consensus 410 ~~~~~~~ 416 (475)
.+++.+-
T Consensus 230 ~tG~~~W 236 (238)
T PF13360_consen 230 KTGKVVW 236 (238)
T ss_dssp TTTEEEE
T ss_pred CCCCEEe
Confidence 9998764
|
... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.7e-07 Score=82.17 Aligned_cols=231 Identities=11% Similarity=0.148 Sum_probs=140.1
Q ss_pred CCCEEEEEcCCeEEEEECCCC--cEEEEeeC--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC----
Q 011916 178 SQNVLAVGLGTCVYLWTASNS--KVTRLCDL--GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG---- 249 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~--~~~~~~~~--~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~---- 249 (475)
.+++||+-.|.+|.|-...+. .++..+.+ ...-.=.-++||||+..||.+...|+|+++|+....+. .+..
T Consensus 8 ~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~ 86 (282)
T PF15492_consen 8 DGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSF 86 (282)
T ss_pred CCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCccccc
Confidence 358999999999999987764 44455554 23345678999999999999999999999998754333 2221
Q ss_pred ---CCCceEEEEeC--------CCEEEEEeCCCcEEEEECCC----CCccEEE--e-cCccCCEEEEEEcCCCCEEEEEe
Q 011916 250 ---HQTRAGVLAWN--------SRILSSGSRDRNILQHDLRV----SSDYICK--L-AGHKSEVCGLKWSHDDRELASGG 311 (475)
Q Consensus 250 ---h~~~v~~l~~~--------~~~l~sgs~dg~I~iwd~~~----~~~~~~~--~-~~h~~~V~~l~~s~~~~~lasg~ 311 (475)
-...|..+.|- ...|++-..+|.++-|-+.. ....... + ..+...|.++.++|..++|++||
T Consensus 87 ~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG 166 (282)
T PF15492_consen 87 PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGG 166 (282)
T ss_pred CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEec
Confidence 12456666661 13567777788887776532 1122222 2 23467899999999989888887
Q ss_pred CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC------CeEEEEECCCCceeee-ecCCCCeeEE
Q 011916 312 NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD------RCIRFWNTSNGHQLNS-VDTGSQVCNL 384 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d------~~I~iwd~~~~~~~~~-~~~~~~v~~l 384 (475)
.... +.+. -......+++-..-.+..+..-+.. ..| .+..+|.+-+.+.... ......|..+
T Consensus 167 ~~~~------~~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~-~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~km 235 (282)
T PF15492_consen 167 CEQN------QDGM----SKASSCGLTAWRILSDSPYYKQVTS-SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKM 235 (282)
T ss_pred cCCC------CCcc----ccccccCceEEEEcCCCCcEEEccc-cCccccccccccceeeccceeeeeccccCCCceEEE
Confidence 5322 0000 0011112222222111111111110 011 1123344333222211 2345679999
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 385 AWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 385 ~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
..||||..|+++ ..+|.|.+|++++.........++
T Consensus 236 SlSPdg~~La~i--h~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 236 SLSPDGSLLACI--HFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred EECCCCCEEEEE--EcCCeEEEEecCcchhhcccchhh
Confidence 999999999995 478999999999988877766443
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-07 Score=83.79 Aligned_cols=223 Identities=14% Similarity=0.170 Sum_probs=154.3
Q ss_pred CCeEEEEECCCCe-ee--EEecCCCCceEEEEeCC--CEEEEEeC---CCcEEEEECCCC-CccE--EEecCccCCEEEE
Q 011916 230 LGQVQVWDGTQCK-RV--RTFGGHQTRAGVLAWNS--RILSSGSR---DRNILQHDLRVS-SDYI--CKLAGHKSEVCGL 298 (475)
Q Consensus 230 dg~v~iwd~~~~~-~~--~~~~~h~~~v~~l~~~~--~~l~sgs~---dg~I~iwd~~~~-~~~~--~~~~~h~~~V~~l 298 (475)
+.-|++|++.+.. .+ ...-.+.+..+-|+|++ +.|.++.. +|.|..|.+... +... .........-+-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 3569999987422 11 12224666778888864 56877754 578888888743 3221 1112222334889
Q ss_pred EEcCCCCEEEEEeC-CCcEEEEECCC-Cce--eEEEeccccc----------eeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 299 KWSHDDRELASGGN-DNQLLVWNQHS-QQP--TLRLTEHTAA----------VKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 299 ~~s~~~~~lasg~~-Dg~I~iwd~~~-~~~--~~~~~~h~~~----------v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
+++++|++|+++.. -|.|.++-++. |.+ ...+..|.+. +....+.|++++|+++.- .-.+|.+|
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL--G~Dri~~y 172 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL--GTDRIFLY 172 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--CCceEEEE
Confidence 99999999998864 57899999865 332 2122335555 888999999998888765 45679999
Q ss_pred ECCCCceee----eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEecC---------CCcceEEEEE
Q 011916 365 NTSNGHQLN----SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-AKVSTLTG---------HSLRVLYLAT 430 (475)
Q Consensus 365 d~~~~~~~~----~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~---------h~~~V~~l~~ 430 (475)
++..|.... .+..+.....|.|+|++++..++ ..-+++|.+|.+... ..+..++. .......+.+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v-~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi 251 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLV-NELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI 251 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEE-eccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence 999876543 23567788999999999999887 567999999999773 33444432 2345677889
Q ss_pred CCCCCEEEEEeC-CCCEEEEecCCCC
Q 011916 431 SPDGQTIVTGAG-DETLRFWNVFPSL 455 (475)
Q Consensus 431 spdg~~l~s~s~-Dg~I~iW~~~~~~ 455 (475)
++||++|+++.. ...|-+|.+.+..
T Consensus 252 s~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 252 SPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred CCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 999999998743 3368888887653
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-06 Score=97.31 Aligned_cols=234 Identities=10% Similarity=0.107 Sum_probs=148.7
Q ss_pred EEecCC--CCEEEE-EcCCeEEEEECCCCcEEEEeeCCC------------CCcEEEEEEcCCCCEEEEEe-CCCeEEEE
Q 011916 173 LVDWSS--QNVLAV-GLGTCVYLWTASNSKVTRLCDLGP------------GDSVCSVQWTREGSYISVGT-NLGQVQVW 236 (475)
Q Consensus 173 ~l~ws~--~~~la~-~~~~~V~lw~~~~~~~~~~~~~~~------------~~~V~~v~~spdg~~la~g~-~dg~v~iw 236 (475)
.+++++ ++++.+ ..++.|.+||.........-..+. -.....|++.++++.|+++. .++.|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 355654 334444 346789999986543322221111 12357899999888766654 45779999
Q ss_pred ECCCCeeeEEecCC-----------------CCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecC------
Q 011916 237 DGTQCKRVRTFGGH-----------------QTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAG------ 290 (475)
Q Consensus 237 d~~~~~~~~~~~~h-----------------~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------ 290 (475)
|..++.. .++.+- -..-..++++ +.++++...++.|++||.... . +..+.+
T Consensus 652 d~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g-~-v~~~~G~G~~~~ 728 (1057)
T PLN02919 652 DFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG-V-TRVFSGDGYERN 728 (1057)
T ss_pred ecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC-e-EEEEecCCcccc
Confidence 9877653 333210 0122456764 456677778899999998632 2 111111
Q ss_pred ---------ccCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEe-------------cc--------ccceeE
Q 011916 291 ---------HKSEVCGLKWSHDDRELA-SGGNDNQLLVWNQHSQQPTLRLT-------------EH--------TAAVKA 339 (475)
Q Consensus 291 ---------h~~~V~~l~~s~~~~~la-sg~~Dg~I~iwd~~~~~~~~~~~-------------~h--------~~~v~~ 339 (475)
.-....+|+++|+++.|+ +-+.++.|++||+.++....... .+ -.....
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~G 808 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLG 808 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCce
Confidence 112356799999998554 45567899999998765321110 00 112468
Q ss_pred EEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--------------CCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 340 IAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--------------SQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 340 l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
++++++|. ++++.. .++.|++||..++........+ .....++++++|+.+++ ...++.|+
T Consensus 809 vavd~dG~-LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa--Dt~Nn~Ir 883 (1057)
T PLN02919 809 VLCAKDGQ-IYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA--DTNNSLIR 883 (1057)
T ss_pred eeEeCCCc-EEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE--ECCCCEEE
Confidence 89999998 566544 7999999999887765443321 24678999999986666 77899999
Q ss_pred EEECCCCce
Q 011916 406 VWKYPSMAK 414 (475)
Q Consensus 406 iwd~~~~~~ 414 (475)
+||+.+++.
T Consensus 884 vid~~~~~~ 892 (1057)
T PLN02919 884 YLDLNKGEA 892 (1057)
T ss_pred EEECCCCcc
Confidence 999988754
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.4e-07 Score=96.02 Aligned_cols=236 Identities=14% Similarity=0.236 Sum_probs=174.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCC--------------CEEEEEeCCCcEEE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--------------RILSSGSRDRNILQ 275 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--------------~~l~sgs~dg~I~i 275 (475)
..-.++.|+|.| +||.|+. ..|.+.|..+-+.+..+.-|...|+.+.|.+ -+|+++...|.|.+
T Consensus 16 sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil 93 (1062)
T KOG1912|consen 16 SNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIIL 93 (1062)
T ss_pred ccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEE
Confidence 335688899877 6888877 5799999999999999999999999999931 26788889999999
Q ss_pred EECCCCCccEEEecCccCCEEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCC-cEE
Q 011916 276 HDLRVSSDYICKLAGHKSEVCGLKWSH---DD-RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS-SLL 350 (475)
Q Consensus 276 wd~~~~~~~~~~~~~h~~~V~~l~~s~---~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-~ll 350 (475)
||.. ....+..+..|...|..++|-+ +. ..|+.-.....|.+|+..+|+.............++.+.|... ++.
T Consensus 94 ~d~~-~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~ 172 (1062)
T KOG1912|consen 94 VDFV-LASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFC 172 (1062)
T ss_pred EEeh-hhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEE
Confidence 9998 4556667888889999999976 33 4666667778999999999999888777667778899988654 344
Q ss_pred EEecCCCCCeEEEEECCC-------Cceeeee-cCCC-------------------------CeeEEEEcCCCCeEEEEE
Q 011916 351 ASGGGTADRCIRFWNTSN-------GHQLNSV-DTGS-------------------------QVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~-------~~~~~~~-~~~~-------------------------~v~~l~~s~~~~~l~~~~ 397 (475)
+.| ..|.+.+-+... |+..+.. ++.. ....++|+|.-+.++.+
T Consensus 173 ~l~---s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi- 248 (1062)
T KOG1912|consen 173 VLG---SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFI- 248 (1062)
T ss_pred EEc---cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEE-
Confidence 443 466666665421 1211111 1000 02335678877666553
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC--CEEEEEeCCCCEEEEecCC
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG--QTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg--~~l~s~s~Dg~I~iW~~~~ 453 (475)
.-...+.++|++-...+....-..+.+.-+.|-|++ ..|++.-.||.+.||--..
T Consensus 249 -~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 249 -TFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred -EeccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 346779999999888888877666767777888765 4788999999999997654
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.4e-08 Score=91.38 Aligned_cols=240 Identities=14% Similarity=0.295 Sum_probs=167.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----eeEEecCCC------------CceEEEEe-C---CCEEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-----RVRTFGGHQ------------TRAGVLAW-N---SRILS 265 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~-~---~~~l~ 265 (475)
...+.|++|.|...|.||++|...|.|.+|.-+... ....+++|. ..|..+.| + -..++
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 345789999999999999999999999999855432 233455554 35778888 2 25777
Q ss_pred EEeCCCcEEEEECCCCC------------------cc-----------------------EE-EecCccCCEEEEEEcCC
Q 011916 266 SGSRDRNILQHDLRVSS------------------DY-----------------------IC-KLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~------------------~~-----------------------~~-~~~~h~~~V~~l~~s~~ 303 (475)
..+.|++|++|.+.... .. .+ ....|...|.++.++.|
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 78899999999886331 00 00 11357777899999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCce---eEEEecc-----ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee---
Q 011916 304 DRELASGGNDNQLLVWNQHSQQP---TLRLTEH-----TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL--- 372 (475)
Q Consensus 304 ~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h-----~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~--- 372 (475)
...++++. |-.|.+|++.-... +..++.| ..-|++..|+|....++.-.+ ..|.|++-|++.....
T Consensus 184 ~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 184 KETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred hheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEehhhhhhhhccCc
Confidence 88888765 57899999874332 2222333 345788999998776665544 7999999999843211
Q ss_pred ---ee--e---c------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-ceEEEecCCC------------cce
Q 011916 373 ---NS--V---D------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM-AKVSTLTGHS------------LRV 425 (475)
Q Consensus 373 ---~~--~---~------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~------------~~V 425 (475)
.. + . .-+.|..+.|+++|+++++ .+-.+|.|||.... .++.++.-|. ..|
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls---RdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS---RDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE---eccceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 11 1 1 1256889999999999997 35678999999754 4566665442 223
Q ss_pred ---EEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 426 ---LYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 426 ---~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
..+.||-|.+.+++|+.....-|+-+.
T Consensus 338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeEEEEecCCcccccccccccceeeeccc
Confidence 347788888889998888777777644
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.8e-07 Score=96.89 Aligned_cols=238 Identities=16% Similarity=0.256 Sum_probs=152.2
Q ss_pred cEEEEEEcCCCCEEEEEeC---C---CeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeC---CCcEEEEECC
Q 011916 211 SVCSVQWTREGSYISVGTN---L---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR---DRNILQHDLR 279 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~---d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~---dg~I~iwd~~ 279 (475)
.-..|+|-.||.|+|+.+- . ..++||+-+ |.+..+-+.-.+--.+++| +|++|++..+ ...|.+|.-.
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC
Confidence 4567899999999999875 3 468999954 6655554444444567889 6788888764 3456666543
Q ss_pred CCCccEEEec--CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--eEEEec-cccceeEEEECCCCCcEEEEec
Q 011916 280 VSSDYICKLA--GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP--TLRLTE-HTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 280 ~~~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~--~~~~~~-h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
.-.+-...+. .....|..|.|++|+..||..-.|. |.+|-..+..- .+.+.. ....+..+.|+|....-+....
T Consensus 290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t 368 (928)
T PF04762_consen 290 GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLT 368 (928)
T ss_pred CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEe
Confidence 2112222222 4566799999999999999988665 99999887642 222221 2234555999997766454433
Q ss_pred CCCCCeEEEEEC----CC----------------Cce----------------eeeecCCCCeeEEEEcCCCCeEEEEEe
Q 011916 355 GTADRCIRFWNT----SN----------------GHQ----------------LNSVDTGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 355 Gs~d~~I~iwd~----~~----------------~~~----------------~~~~~~~~~v~~l~~s~~~~~l~~~~g 398 (475)
.++.+..++. .. |.. ...+...+.|..++|++++..+++ -
T Consensus 369 --~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~av--l 444 (928)
T PF04762_consen 369 --SNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAV--L 444 (928)
T ss_pred --cCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEE--E
Confidence 4455544432 11 111 122335678999999999988777 5
Q ss_pred cCCCeEEEEECCCCce--------EEEec----------CCCcceEEEEECCCCCEEEEEeCC---CCEEEEecCCC
Q 011916 399 YSQNQIMVWKYPSMAK--------VSTLT----------GHSLRVLYLATSPDGQTIVTGAGD---ETLRFWNVFPS 454 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spdg~~l~s~s~D---g~I~iW~~~~~ 454 (475)
..+|.|.+|....... ...+. .-...+..++|..+...++....+ ..+.++++...
T Consensus 445 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 445 TSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred ECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 5799999988543211 11111 123457888998888777766554 67888888544
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.3e-10 Score=113.40 Aligned_cols=211 Identities=11% Similarity=0.195 Sum_probs=155.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEe-CCC-cEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGS-RDR-NILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs-~dg-~I~iwd~~~~~ 282 (475)
.+....+|++|+-+.++|++|+..|.|+++++.+|.......+|...|+-+.. +|..+++.+ ... ...+|++....
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence 56788999999999999999999999999999999999999999999999987 565555443 333 57899998655
Q ss_pred ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-ec---cccceeEEEECCCCCcEEEEecCCCC
Q 011916 283 DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL-TE---HTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~-~~---h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
.....+.. -.++.|+.....-+.|..-....+||+.++.++.++ .+ ....-+...|+|+.. |+. .|
T Consensus 1179 ~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~-LIl-----nd 1248 (1516)
T KOG1832|consen 1179 GPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT-LIL-----ND 1248 (1516)
T ss_pred Cccccccc----cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc-eEe-----eC
Confidence 55555443 457888876656666666678999999999877663 22 223347788999988 555 46
Q ss_pred CeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEE
Q 011916 359 RCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 438 (475)
| .+||++..+.++.++.-..-..=.|+|.|..++. . -.|||+++.+.+..+..-. -..+.|+..|..++
T Consensus 1249 G--vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVII--N-----SEIwD~RTF~lLh~VP~Ld--qc~VtFNstG~VmY 1317 (1516)
T KOG1832|consen 1249 G--VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVII--N-----SEIWDMRTFKLLHSVPSLD--QCAVTFNSTGDVMY 1317 (1516)
T ss_pred c--eeeeeccHHHHhhhhhheecccccccCCCceEEe--e-----chhhhhHHHHHHhcCcccc--ceEEEeccCccchh
Confidence 6 5899998888877754333344569999999998 3 2499999887766554322 13455666665444
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.9e-07 Score=91.08 Aligned_cols=256 Identities=13% Similarity=0.024 Sum_probs=159.2
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCce--
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCS-VQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRA-- 254 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~-v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v-- 254 (475)
.+.+++++.++.|+-+|.++|+..-..... ..+.+ ... .+..+++++.+|.|..+|.++++.+..+.......
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVA--GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCC--CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 356777777899999999999876554432 22222 111 24567788889999999999999988776331110
Q ss_pred ---EEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc----C---CEEEEEEcC--CCCEEEEEeCCCcEEEEECC
Q 011916 255 ---GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK----S---EVCGLKWSH--DDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 255 ---~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~---~V~~l~~s~--~~~~lasg~~Dg~I~iwd~~ 322 (475)
......+..++.++.+|.+..+|... ++.+-...... . ....+.-+| .+..++.++.+|.+..+|..
T Consensus 196 ~~~~sP~v~~~~v~~~~~~g~v~a~d~~~-G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 196 RGESAPATAFGGAIVGGDNGRVSAVLMEQ-GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred cCCCCCEEECCEEEEEcCCCEEEEEEccC-ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 11112244677788889999888874 33222211000 0 011111222 34567777889999999999
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--CCCeeEEEEcCCCCeEEEEEecC
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--GSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
+++.+..... .....+.. .+..+++.. .++.+..+|..+|+.+..... ......... .+..|++ +..
T Consensus 275 tG~~~W~~~~--~~~~~~~~--~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v--~~~ 343 (394)
T PRK11138 275 SGQIVWKREY--GSVNDFAV--DGGRIYLVD---QNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVV--GDS 343 (394)
T ss_pred CCCEEEeecC--CCccCcEE--ECCEEEEEc---CCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEE--EeC
Confidence 9987765432 11112222 344455543 699999999999988765432 111222222 2456666 778
Q ss_pred CCeEEEEECCCCceEEEecCCCcceEE-EEECCCCCEEEEEeCCCCEEEEec
Q 011916 401 QNQIMVWKYPSMAKVSTLTGHSLRVLY-LATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 401 dg~I~iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+|.|+++|..+++.+...+-....+.. ..+ .+..|+.++.||.|+.++.
T Consensus 344 ~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 344 EGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 999999999999988877543333322 222 2447888899999988764
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.8e-07 Score=84.11 Aligned_cols=212 Identities=13% Similarity=0.082 Sum_probs=142.7
Q ss_pred CEEEEEcCCeEEEEECCCCcE-EEEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEE
Q 011916 180 NVLAVGLGTCVYLWTASNSKV-TRLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVL 257 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~-~~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l 257 (475)
.++++|..|...+|...+.+. .++++ .+...|+-+.=..+ .--+..++.|.++++.+++.+.....+....-.+.++
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd-~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCD-VSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred EEEeccccceeeeecccCcccceeeec-ccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 355555789999999986654 44554 34443332221112 2347778888889988877554433332222336666
Q ss_pred Ee--CCCEEEEEeCCCcEEEEECCCCCccEEE--ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-----
Q 011916 258 AW--NSRILSSGSRDRNILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL----- 328 (475)
Q Consensus 258 ~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~----- 328 (475)
+. ++.++++.+....|..|.+...++.+.. .......=.+..|+.....+|++..||++.|||++......
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 66 5789999999999999999866655443 23334445678899999999999999999999999654322
Q ss_pred EEeccccceeEEEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeec--------CCCC-eeEEEEcCCCCeEEE
Q 011916 329 RLTEHTAAVKAIAWSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVD--------TGSQ-VCNLAWSKNVNELVS 395 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--------~~~~-v~~l~~s~~~~~l~~ 395 (475)
+-..|.++++.+.|++.|. .|+.+- .-+.+.+.|++++.....+. +..+ +..-.|+.++..+.+
T Consensus 245 trp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v 319 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV 319 (344)
T ss_pred cCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccc
Confidence 2234899999999998664 344543 46889999999987666552 2222 666667666666555
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.3e-07 Score=90.33 Aligned_cols=271 Identities=10% Similarity=0.020 Sum_probs=164.2
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEE------EEEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCS------VQWTR--EGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~------v~~sp--dg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
.+.+++.+.++.|+-+|..+|+..=...+.....+.. +.-.| ++..+++++.+|.+..+|.++++.+.....
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC
Confidence 4566777778899999999988654444322111100 00011 456788888999999999999999887764
Q ss_pred CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEE-EEEEcC--CCCEEEEEeCCCcEEEEECCCCce
Q 011916 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVC-GLKWSH--DDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 250 h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~-~l~~s~--~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
...........+..++.+..++.+..+|.. .++.+-........+. ...-+| .+..++.++.++.+..+|..+++.
T Consensus 149 ~~~~~ssP~v~~~~v~v~~~~g~l~ald~~-tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~ 227 (394)
T PRK11138 149 AGEALSRPVVSDGLVLVHTSNGMLQALNES-DGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQL 227 (394)
T ss_pred CCceecCCEEECCEEEEECCCCEEEEEEcc-CCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChh
Confidence 432222223345677788889999999998 4444433332111000 000112 233577778889999999999887
Q ss_pred eEEEecccc-------ceeEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEE
Q 011916 327 TLRLTEHTA-------AVKAIAWSP--HQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 327 ~~~~~~h~~-------~v~~l~~sp--~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 397 (475)
+........ ....+.-+| .+..+++.+ .++.+..+|..+|+.+........ ..+. ..+..+++
T Consensus 228 ~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~~vy~-- 299 (394)
T PRK11138 228 IWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA---YNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGGRIYL-- 299 (394)
T ss_pred hheeccccCCCccchhcccccCCCcEEECCEEEEEE---cCCeEEEEECCCCCEEEeecCCCc-cCcE--EECCEEEE--
Confidence 665432110 011111122 234455543 689999999999998877654332 1122 24566666
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcc-eEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLR-VLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+..+|.+..+|..+++.+-....-... ...... .+..|+.++.||.|.+.|..+++....
T Consensus 300 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 300 VDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred EcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 567899999999998876543321111 111222 245778888999999999888765443
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-08 Score=94.39 Aligned_cols=162 Identities=17% Similarity=0.240 Sum_probs=120.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQP---TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ 371 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~ 371 (475)
+..+..++++++||++..+....++++..... ......-...-.++.|..+....+++-.......+.+|....+.+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 34455678899999999888887887765432 111112233345555555555444433212566777888777888
Q ss_pred eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe-cCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 372 LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL-TGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 372 ~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
...+.|-+.+..++|+||++.|++ +..|..|++-.++..-.+..+ -||+.-|..++.-++ ..|+++|+|++|++||
T Consensus 145 ~~~lGhvSml~dVavS~D~~~Iit--aDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIIT--ADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD 221 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEE--ecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence 888889999999999999999999 889999999999877666555 479999999998755 4689999999999999
Q ss_pred cCCCCCCCC
Q 011916 451 VFPSLKAPA 459 (475)
Q Consensus 451 ~~~~~~~~~ 459 (475)
+..+.....
T Consensus 222 ~~sgk~L~t 230 (390)
T KOG3914|consen 222 ITSGKLLDT 230 (390)
T ss_pred cccCCcccc
Confidence 999987744
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.6e-08 Score=94.28 Aligned_cols=157 Identities=18% Similarity=0.208 Sum_probs=107.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCee----eEEec--CCCCceEEEEeCCCEEEEE---eCCCcEEEEECCCCCc
Q 011916 213 CSVQWTREGSYISVGTNLGQVQVWDGTQCKR----VRTFG--GHQTRAGVLAWNSRILSSG---SRDRNILQHDLRVSSD 283 (475)
Q Consensus 213 ~~v~~spdg~~la~g~~dg~v~iwd~~~~~~----~~~~~--~h~~~v~~l~~~~~~l~sg---s~dg~I~iwd~~~~~~ 283 (475)
..+..++++++||++..+....++++..... +.... .....+..+..+ .....+ +....+.+|.... .
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~-~sv~v~dkagD~~~~di~s~~~--~ 142 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED-TSVLVADKAGDVYSFDILSADS--G 142 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc-ceEEEEeecCCceeeeeecccc--c
Confidence 3455677888999988887777777644322 22221 112223333333 233333 3444555555442 4
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-eccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
....+.+|-..+..++|+||+++++++..|..|+|-....-..+..+ .+|..-|..++.-++.. +.++| .|++|+
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~--LlS~s--GD~tlr 218 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYL--LLSGS--GDKTLR 218 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCce--eeecC--CCCcEE
Confidence 44557789999999999999999999999999999877655444443 46999999999988764 44444 599999
Q ss_pred EEECCCCceeeeec
Q 011916 363 FWNTSNGHQLNSVD 376 (475)
Q Consensus 363 iwd~~~~~~~~~~~ 376 (475)
+||+.+|+++.+++
T Consensus 219 ~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 219 LWDITSGKLLDTCD 232 (390)
T ss_pred EEecccCCcccccc
Confidence 99999999997765
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.87 E-value=9.2e-07 Score=82.35 Aligned_cols=215 Identities=11% Similarity=0.101 Sum_probs=136.0
Q ss_pred CCeEEEEECCCCeeeEEecC---CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 230 LGQVQVWDGTQCKRVRTFGG---HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~---h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
+|+|..||..+++.+....- ....+......+..+++++.++.|..||.. .++.+-.... ...+.... ..++..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~-tG~~~W~~~~-~~~~~~~~-~~~~~~ 78 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAK-TGKVLWRFDL-PGPISGAP-VVDGGR 78 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETT-TSEEEEEEEC-SSCGGSGE-EEETTE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECC-CCCEEEEeec-ccccccee-eecccc
Confidence 68999999999999988763 222222223367788888999999999997 4554444432 22111111 224557
Q ss_pred EEEEeCCCcEEEEECCCCceeEEE-eccc---cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCC--
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRL-TEHT---AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ-- 380 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~-~~h~---~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~-- 380 (475)
+++++.++.|+.+|..+++.+... .... ...........+..+++.. .++.|..+|.++|+.+........
T Consensus 79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEecCCCcEEEEeecCCCCC
Confidence 777778889999999999998874 3221 1111222222255565543 589999999999999887754321
Q ss_pred ---------eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 381 ---------VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 381 ---------v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+..-....++ .+++ ...++.+..+|+.+++.+.... ...+..+ ...++..|+.++.++.|..||+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~--~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYV--SSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEE--ECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEET
T ss_pred CcceeeecccccceEEECC-EEEE--EcCCCeEEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEEC
Confidence 1122222344 5555 4456644444999998765443 2223331 3457778888889999999999
Q ss_pred CCCCC
Q 011916 452 FPSLK 456 (475)
Q Consensus 452 ~~~~~ 456 (475)
.+++.
T Consensus 230 ~tG~~ 234 (238)
T PF13360_consen 230 KTGKV 234 (238)
T ss_dssp TTTEE
T ss_pred CCCCE
Confidence 98764
|
... |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-07 Score=87.88 Aligned_cols=242 Identities=16% Similarity=0.216 Sum_probs=170.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEec-CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCC-
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT-QCKRVRTFG-GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVS- 281 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~-~~~~~~~~~-~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~- 281 (475)
++.+.|++...-|...-+++.+.|.+++||--. .++.-..+. .....++++.+. ...|+.|-.+|++.-+.+...
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedf 101 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDF 101 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhh
Confidence 677788888888878889999999999999633 333333332 234577888885 478999999999998876532
Q ss_pred --CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 282 --SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 282 --~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
....+....|...|..+-|+....++++.+.|..+.---.+.+..+-.+.- .....++.+.-. .... |...+
T Consensus 102 nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-~~~~t~~~~d~~---~~fv--Gd~~g 175 (404)
T KOG1409|consen 102 NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-ETPASALQFDAL---YAFV--GDHSG 175 (404)
T ss_pred hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-eccCCCCceeeE---EEEe--ccccc
Confidence 234556678999999999999899999999987665433344332211110 001111111111 2222 33566
Q ss_pred eEEEEECC--CCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEEecCCCcceEEEEECCCCC
Q 011916 360 CIRFWNTS--NGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 360 ~I~iwd~~--~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~spdg~ 435 (475)
.|....+. .-..+..+ .+...+.++.|.+....|++ |.+|..+.+||+.-.+ ...++.+|...|..+..-+--+
T Consensus 176 qvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfS--g~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~ 253 (404)
T KOG1409|consen 176 QITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFS--GASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTR 253 (404)
T ss_pred ceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEe--ccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhhe
Confidence 66555433 23334444 46788999999999999999 9999999999997654 4567789999999999888888
Q ss_pred EEEEEeCCCCEEEEecCCCCC
Q 011916 436 TIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.|++++.||.|.+|+++....
T Consensus 254 ~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 254 QLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred eeeeccCCCeEEEEeccceee
Confidence 999999999999999986554
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-07 Score=88.13 Aligned_cols=255 Identities=14% Similarity=0.154 Sum_probs=163.2
Q ss_pred EEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC---CCEEE
Q 011916 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN---SRILS 265 (475)
Q Consensus 190 V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~ 265 (475)
|.+.+..+-+..+++. .+...|.+++|+|..+ ++..++-+..|.|.|+++...+..+..+ ..+++++|+ .++|.
T Consensus 175 v~~l~~~~fkssq~lp-~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IY 252 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP-GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIY 252 (463)
T ss_pred eEEeccCCcchhhccc-ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeE
Confidence 6666655555444332 6778999999999776 7888999999999999999999998888 889999994 48999
Q ss_pred EEeCCCcEEEEECCCCCccEEEecC--ccCCEEEEEEc------CCCCEEEEEeCCCcEEEEECCC--CceeEEEe-ccc
Q 011916 266 SGSRDRNILQHDLRVSSDYICKLAG--HKSEVCGLKWS------HDDRELASGGNDNQLLVWNQHS--QQPTLRLT-EHT 334 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~s------~~~~~lasg~~Dg~I~iwd~~~--~~~~~~~~-~h~ 334 (475)
.|..+|.|.+||++.....+..+.+ ...+|..++.- +.|.+|+.... .+..|++.. +.....+. +..
T Consensus 253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~p 330 (463)
T KOG1645|consen 253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPP 330 (463)
T ss_pred EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCC
Confidence 9999999999999976655544443 22345544432 23445554443 255566542 22222222 235
Q ss_pred cceeEEEECCCCCcEEEEecCCCC------CeEEE-EECCCCceeeeec---CCCC-----eeEEEE-cCCCCeEEEEEe
Q 011916 335 AAVKAIAWSPHQSSLLASGGGTAD------RCIRF-WNTSNGHQLNSVD---TGSQ-----VCNLAW-SKNVNELVSTHG 398 (475)
Q Consensus 335 ~~v~~l~~sp~~~~ll~sg~Gs~d------~~I~i-wd~~~~~~~~~~~---~~~~-----v~~l~~-s~~~~~l~~~~g 398 (475)
+...+++.++-.+.++++.- .+ ..|-. -|-.+|..+.... .++. -....+ .++.++++.. |
T Consensus 331 G~cismqy~~~snh~l~tyR--s~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~-g 407 (463)
T KOG1645|consen 331 GICISMQYHGVSNHLLLTYR--SNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVV-G 407 (463)
T ss_pred cceeeeeecCccceEEEEec--CCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEe-c
Confidence 66777888887777887753 11 11111 1223333332221 0111 111222 3344555554 7
Q ss_pred cCCCeEEEEECCCCceEEEecCCCcceEEEEECC-C-CCEEEEEeCCCCEEEEecCC
Q 011916 399 YSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-D-GQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-d-g~~l~s~s~Dg~I~iW~~~~ 453 (475)
.+.+.+.+||..+++.+.++.-. .+|..++... + +.+|++-. |..++|+....
T Consensus 408 d~tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 408 DSTNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIYKNES 462 (463)
T ss_pred CCcceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEEecCC
Confidence 78899999999999999988744 7888877654 3 34666664 55788887653
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-05 Score=72.84 Aligned_cols=230 Identities=12% Similarity=0.143 Sum_probs=131.7
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEec---CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 215 VQWTREGSYISVGTNLGQVQVWDGTQC--KRVRTFG---GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 215 v~~spdg~~la~g~~dg~v~iwd~~~~--~~~~~~~---~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
++.+.+|+.||+-- |..|.|-...+. ..+.... .....=..++| ++.+|+.+...|+|.++|+.. ..+..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g--~~lf~ 79 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG--SELFV 79 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc--ceeEE
Confidence 45678888777755 456777654432 1222222 22334467888 468999999999999999973 22222
Q ss_pred ecC-------ccCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCC-----CceeEEEe--c-cccceeEEEECCCC
Q 011916 288 LAG-------HKSEVCGLKWSHD------DRELASGGNDNQLLVWNQHS-----QQPTLRLT--E-HTAAVKAIAWSPHQ 346 (475)
Q Consensus 288 ~~~-------h~~~V~~l~~s~~------~~~lasg~~Dg~I~iwd~~~-----~~~~~~~~--~-h~~~v~~l~~sp~~ 346 (475)
+.. -...|.++.|-+- ...|++-..+|.++-|-+.. .+..+.|. . +...|.++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 221 2346777777542 22566777778877776532 22333332 2 46789999999998
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC------eEEEEECCCCceEEEecC
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN------QIMVWKYPSMAKVSTLTG 420 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg------~I~iwd~~~~~~~~~l~~ 420 (475)
+.|++.|. ....-..+. .....+++-..-.+..+...+....++ ...+|.+.+.........
T Consensus 160 ~LLlVgG~--~~~~~~~s~----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~ 227 (282)
T PF15492_consen 160 RLLLVGGC--EQNQDGMSK----------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ 227 (282)
T ss_pred CEEEEecc--CCCCCcccc----------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecccc
Confidence 75554432 332100000 011112222222222221111111111 224455444333322233
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 421 HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 421 h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
....|..|..||||+.||+...+|.|.+|++..-.....
T Consensus 228 ~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~ 266 (282)
T PF15492_consen 228 EQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRS 266 (282)
T ss_pred CCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcc
Confidence 567799999999999999999999999999987666554
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.8e-05 Score=72.90 Aligned_cols=212 Identities=14% Similarity=0.164 Sum_probs=138.1
Q ss_pred EEecCC-C-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 173 LVDWSS-Q-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWT-REGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 173 ~l~ws~-~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~s-pdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
...|.+ + .++.+.. ++.|+.|+..+++..... .. . ...+++. ++| .|+++... .+.++|..+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~--~-~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LP--G-PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SS--S-EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cC--C-CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEee
Confidence 466776 3 5666654 789999999988765433 22 2 6677777 564 55555654 45666998886554443
Q ss_pred C-----CCCceEEEEeC--CCEEEEEeCC--------CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEE-EEeC
Q 011916 249 G-----HQTRAGVLAWN--SRILSSGSRD--------RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELA-SGGN 312 (475)
Q Consensus 249 ~-----h~~~v~~l~~~--~~~l~sgs~d--------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~la-sg~~ 312 (475)
. .......++++ |++.++.... |.|..++.. ++ +..+...-....+|+|+|+++.|+ +-+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVVADGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEEEEEESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--Ce-EEEEecCcccccceEECCcchheeecccc
Confidence 2 34567788884 5666665543 445556654 33 333333455688999999999776 4566
Q ss_pred CCcEEEEECCCCce-------eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeeEE
Q 011916 313 DNQLLVWNQHSQQP-------TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVCNL 384 (475)
Q Consensus 313 Dg~I~iwd~~~~~~-------~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~~l 384 (475)
.+.|..+++..... ...+....+..-.+++..+|. |+++.. ..+.|.++|.. |+.+..+... ..++++
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 78899999863221 112222223478899999998 444432 58999999987 9888888765 789999
Q ss_pred EE-cCCCCeEEEEE
Q 011916 385 AW-SKNVNELVSTH 397 (475)
Q Consensus 385 ~~-s~~~~~l~~~~ 397 (475)
+| -++.+.|++++
T Consensus 231 ~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 231 AFGGPDGKTLYVTT 244 (246)
T ss_dssp EEESTTSSEEEEEE
T ss_pred EEECCCCCEEEEEe
Confidence 99 47777787754
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.7e-07 Score=97.03 Aligned_cols=181 Identities=17% Similarity=0.225 Sum_probs=144.0
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEE
Q 011916 220 EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLK 299 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 299 (475)
++..++.|+-...+..+|+.+.+..+...-..+.|.-+..|++++++|...|+|.+-|.+ ..+.+.++..|.+.|..+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~-s~~~iht~~aHs~siSDfD 224 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPN-SFETIHTFDAHSGSISDFD 224 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCC-cCceeeeeeccccceeeee
Confidence 455677777777889999999988888876676799999999999999999999999998 7788999999999998876
Q ss_pred EcCCCCEEEEEeC---------CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC--
Q 011916 300 WSHDDRELASGGN---------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-- 368 (475)
Q Consensus 300 ~s~~~~~lasg~~---------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-- 368 (475)
. .|+.|+++|. |.-|+|||++..+.+.-+.-+.++ .-+.|+|.-...+++.+ ..|...+-|..+
T Consensus 225 v--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S--~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 225 V--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTS--QSGQFQFVDTATLS 299 (1118)
T ss_pred c--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEe--cccceeeccccccC
Confidence 5 6889999885 556899999987766555444443 55678887665566554 789999999433
Q ss_pred -C-ceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 369 -G-HQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 369 -~-~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
. .-+..+ ..++.+..+.++++++.++. |..+|.|.+|.
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alaf--gd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAF--GDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEE--ecccCcEeeec
Confidence 2 112223 34566999999999999999 99999999997
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-07 Score=84.01 Aligned_cols=231 Identities=13% Similarity=0.204 Sum_probs=140.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe------------cCCCC--ceEEEEeCCCEEEEEeCCCcEEEEE
Q 011916 212 VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF------------GGHQT--RAGVLAWNSRILSSGSRDRNILQHD 277 (475)
Q Consensus 212 V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~------------~~h~~--~v~~l~~~~~~l~sgs~dg~I~iwd 277 (475)
|+.+.++. ...|+++..++.+......++.+...+ ..|++ +...+..-++-++++..||.+.+.+
T Consensus 39 ~~~~~~v~-~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSA-EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechh-hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 55666653 345777777777666655444333322 22221 2222333357899999999999999
Q ss_pred CCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEE
Q 011916 278 LRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-----DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 278 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-----Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
.+.......+...-...-.+.+....++.+.+++- -+..++|+++..+.+..-......|.+++-+|....++++
T Consensus 118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~c 197 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCC 197 (319)
T ss_pred chHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccccEEEE
Confidence 87422222222221112223333445555555432 2356777776443322222223449999999999999999
Q ss_pred ecCCCCCeEEEEECCCCceeeee--cCCCCeeEEEEcCC-CCeEEEEEecCCCeEEEEECCCCceEE-------------
Q 011916 353 GGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKN-VNELVSTHGYSQNQIMVWKYPSMAKVS------------- 416 (475)
Q Consensus 353 g~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~-~~~l~~~~g~~dg~I~iwd~~~~~~~~------------- 416 (475)
|+ .||.+.+||.+.......+ .+...+..+-|+|. +..|++ +.+||.+.-||..+. .+.
T Consensus 198 gt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft--~sedGslw~wdas~~-~l~i~~~~s~~s~WLs 272 (319)
T KOG4714|consen 198 GT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFT--CSEDGSLWHWDASTT-FLSISNQASVISSWLS 272 (319)
T ss_pred ec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeE--ecCCCcEEEEcCCCc-eEEecCcccccccccc
Confidence 76 9999999999987554443 47788999999984 566777 779999999997631 111
Q ss_pred --------EecC----CCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 417 --------TLTG----HSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 417 --------~l~~----h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.+.+ -...|+. |.--|..|++|+.-+.|++.+
T Consensus 273 gD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 273 GDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred CCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence 0000 0111222 333577899999888888875
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.4e-08 Score=98.92 Aligned_cols=196 Identities=20% Similarity=0.404 Sum_probs=144.4
Q ss_pred ceeEEecCCC---CEEEE-EcCCeEEEEECCC--CcEEEEeeCCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCC-
Q 011916 170 YLNLVDWSSQ---NVLAV-GLGTCVYLWTASN--SKVTRLCDLGPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQC- 241 (475)
Q Consensus 170 ~v~~l~ws~~---~~la~-~~~~~V~lw~~~~--~~~~~~~~~~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~- 241 (475)
.+-.+.|++. .+-++ .....-.+|++.. ...+.....+|...|+.+.|.|+. ..|++++-|-.|..||+...
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~ 148 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH 148 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC
Confidence 3445788863 34444 4456678898753 334444444899999999999954 68999999999999998764
Q ss_pred eeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEE
Q 011916 242 KRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLL 317 (475)
Q Consensus 242 ~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~ 317 (475)
..+..+..-......+.|+ ++.++ .+....|.+||.+.+..+...+++|...|.+++|+. ....+.+.++|++|+
T Consensus 149 ~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 149 RPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred cceeeeecccccCceeeecccCcchhh-hccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 4455555555677888995 45444 456678999999988899999999999999999976 344788899999999
Q ss_pred EEECCC-------------------------------------------------------CceeEEEeccccceeEEEE
Q 011916 318 VWNQHS-------------------------------------------------------QQPTLRLTEHTAAVKAIAW 342 (475)
Q Consensus 318 iwd~~~-------------------------------------------------------~~~~~~~~~h~~~v~~l~~ 342 (475)
.||... .++++.|.+|...|....|
T Consensus 228 fw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 228 FWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLW 307 (1081)
T ss_pred eecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhh
Confidence 999653 1256778888888877777
Q ss_pred CCCC---------CcEEEEecCCCCCeEEEEECCC
Q 011916 343 SPHQ---------SSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 343 sp~~---------~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
-..+ .+-+++-+ .|..+++|-+.+
T Consensus 308 R~r~e~~~d~d~rdfQLVTWS--kD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 308 RKRKECDGDYDSRDFQLVTWS--KDQTLRLWPIDS 340 (1081)
T ss_pred hhcccccCCCCccceeEEEee--cCCceEeeeccH
Confidence 4322 23455544 899999998753
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-07 Score=95.85 Aligned_cols=182 Identities=15% Similarity=0.192 Sum_probs=140.1
Q ss_pred cCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceE
Q 011916 176 WSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAG 255 (475)
Q Consensus 176 ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~ 255 (475)
-+++.++.+|....+..+|+.+.+..+....+..+ |+-+. .+++++.+|...|+|.+-|..+.+.++++..|++.|.
T Consensus 145 ~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 145 MGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred cCCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 36778999999999999999999988887765433 55444 4689999999999999999999999999999999999
Q ss_pred EEEeCCCEEEEEeC---------CCcEEEEECCCCCccEEEecCccCCEEEEEEcCC-CCEEEEEeCCCcEEEEE---CC
Q 011916 256 VLAWNSRILSSGSR---------DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWN---QH 322 (475)
Q Consensus 256 ~l~~~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd---~~ 322 (475)
.+...|++|++++. |.-|+|||+|. -..+.-+..+.++ .-+.|+|. ...+++++..|...+.| +.
T Consensus 222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRm-mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRM-MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred eeeccCCeEEEeecccccccccccchhhhhhhhh-hhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccC
Confidence 99999999999975 45579999983 3333223333332 44567773 45788888899999999 33
Q ss_pred CC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 323 SQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 323 ~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
+. ..+..+......+.++.+++.+..++. |..+|.|.+|-
T Consensus 300 NP~~~~~~v~p~~s~i~~fDiSsn~~alaf---gd~~g~v~~wa 340 (1118)
T KOG1275|consen 300 NPPAGVKMVNPNGSGISAFDISSNGDALAF---GDHEGHVNLWA 340 (1118)
T ss_pred CCccceeEEccCCCcceeEEecCCCceEEE---ecccCcEeeec
Confidence 33 223344445566999999999995555 45899999997
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-08 Score=96.38 Aligned_cols=170 Identities=12% Similarity=0.263 Sum_probs=134.3
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CceeEEEeccccceeEEEECCCCCcEEEEecCC
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS-------QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
.+..+.+|...|..++--.+.+-+++++.|.+|++|.++. ..+..++..|..+|.++.|-.+.++++.
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S----- 801 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS----- 801 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee-----
Confidence 3566789999999888777888999999999999999873 2356778889999999999999886655
Q ss_pred CCCeEEEEECCCCceeeeec---CCCCeeEEEEcCC-CCeEEEEEecCCCeEEEEECCCCceEEEec-----CCCcceEE
Q 011916 357 ADRCIRFWNTSNGHQLNSVD---TGSQVCNLAWSKN-VNELVSTHGYSQNQIMVWKYPSMAKVSTLT-----GHSLRVLY 427 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~-~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~ 427 (475)
.|+.|++||.--|..+.... ..+.+..+..-++ .+.++.+.++...+|+++|.+..+.+.+++ +...-+.+
T Consensus 802 cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ 881 (1034)
T KOG4190|consen 802 CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA 881 (1034)
T ss_pred ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence 49999999988787766442 2344455555454 444554434678899999999988777765 34466899
Q ss_pred EEECCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 428 LATSPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 428 l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
++..+.|+.++.+-..|.|.+.|..++...+
T Consensus 882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN 912 (1034)
T KOG4190|consen 882 IAVADKGNKLAAALSNGCIAILDARNGKVIN 912 (1034)
T ss_pred EEeccCcchhhHHhcCCcEEEEecCCCceec
Confidence 9999999999999999999999999888655
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.7e-05 Score=71.77 Aligned_cols=228 Identities=15% Similarity=0.145 Sum_probs=157.4
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCe-EEEEECCCCeeeEEecCCCCce----EEEEeCCCEEEEEeC-----CCcEEEEECC
Q 011916 211 SVCSVQWTR-EGSYISVGTNLGQ-VQVWDGTQCKRVRTFGGHQTRA----GVLAWNSRILSSGSR-----DRNILQHDLR 279 (475)
Q Consensus 211 ~V~~v~~sp-dg~~la~g~~dg~-v~iwd~~~~~~~~~~~~h~~~v----~~l~~~~~~l~sgs~-----dg~I~iwd~~ 279 (475)
....++.+| ++..++++-.-|+ ..+||..+++....+....++- ..++-+|++|++.-. .|.|-|||..
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 344678888 6677788877776 6889999999888776444432 233336888888744 4789999998
Q ss_pred CCCccEEEecCccCCEEEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCceeEE--E--eccccce
Q 011916 280 VSSDYICKLAGHKSEVCGLKWSHDDRELASGGN------------------DNQLLVWNQHSQQPTLR--L--TEHTAAV 337 (475)
Q Consensus 280 ~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~------------------Dg~I~iwd~~~~~~~~~--~--~~h~~~v 337 (475)
.....+..+..|.-.-..+.+.|||+.|+++.. +-.|...|..+++.+.+ + ..|...|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 666777788888777788999999988877642 23466677788887766 4 3378899
Q ss_pred eEEEECCCCCcEEEEec-CC---CCCeEEEEECCCCceeeee--------cCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 338 KAIAWSPHQSSLLASGG-GT---ADRCIRFWNTSNGHQLNSV--------DTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~-Gs---~d~~I~iwd~~~~~~~~~~--------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
..+++.++|.-+++.-. |. .---|.+++- ++.+..+ .....+-+++++.++..++++ +-..|.+.
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~t-sPrGg~~~ 242 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVT-SPRGGRVA 242 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEE-CCCCCEEE
Confidence 99999999874443211 00 0112344433 3323332 234679999999999999885 55778999
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDET 445 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~ 445 (475)
+||..+++.+....-. .+..++-.+++ +++|.+ .|.
T Consensus 243 ~~d~~tg~~~~~~~l~--D~cGva~~~~~-f~~ssG-~G~ 278 (305)
T PF07433_consen 243 VWDAATGRLLGSVPLP--DACGVAPTDDG-FLVSSG-QGQ 278 (305)
T ss_pred EEECCCCCEeeccccC--ceeeeeecCCc-eEEeCC-Ccc
Confidence 9999999988766533 36677777777 555544 454
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.6e-08 Score=91.48 Aligned_cols=154 Identities=18% Similarity=0.212 Sum_probs=119.0
Q ss_pred ecCCC---CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----eeeEE
Q 011916 175 DWSSQ---NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC-----KRVRT 246 (475)
Q Consensus 175 ~ws~~---~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~-----~~~~~ 246 (475)
+|+-+ .-+++|.+..|-|-|++++..... .....|.++.|...++++..|+.+|.|.++|+... .+...
T Consensus 218 awSlni~gyhfs~G~sqqv~L~nvetg~~qsf---~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLSQQVLLTNVETGHQQSF---QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeecccccceeEEEEeeccccccc---ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 66643 237788899999999999875443 35688999999999999999999999999999764 22222
Q ss_pred ecCCCCceEEEE---eCCCEEEEEeCCCcEEEEECCCCC--ccEEEecCccCCEEE--EEEcCCCCEEEEEeCCCcEEEE
Q 011916 247 FGGHQTRAGVLA---WNSRILSSGSRDRNILQHDLRVSS--DYICKLAGHKSEVCG--LKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 247 ~~~h~~~v~~l~---~~~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~--l~~s~~~~~lasg~~Dg~I~iw 319 (475)
--|...|+++. +++.+|.+.+.+|+|.+||.+..+ .-+..+.+|...-.- +...+....++++|.|...+||
T Consensus 295 -lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 295 -LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred -EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEE
Confidence 25888888876 478999999999999999999432 237778888654332 3345566788899999999999
Q ss_pred ECCCCceeEEEec
Q 011916 320 NQHSQQPTLRLTE 332 (475)
Q Consensus 320 d~~~~~~~~~~~~ 332 (475)
.++.+..+.++.-
T Consensus 374 sl~~ghLl~tipf 386 (425)
T KOG2695|consen 374 SLDSGHLLCTIPF 386 (425)
T ss_pred ecccCceeeccCC
Confidence 9999988776653
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.5e-08 Score=89.83 Aligned_cols=157 Identities=18% Similarity=0.285 Sum_probs=116.2
Q ss_pred EEcC--CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCC----CccEEE
Q 011916 216 QWTR--EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVS----SDYICK 287 (475)
Q Consensus 216 ~~sp--dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~----~~~~~~ 287 (475)
+|+- .|-++++|.. -.|-+-|++++-.. .|. ..+.|.++.|. ++++..|+++|.|..+|++.. +.+.+.
T Consensus 218 awSlni~gyhfs~G~s-qqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~r 294 (425)
T KOG2695|consen 218 AWSLNIMGYHFSVGLS-QQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQR 294 (425)
T ss_pred hhhhccceeeeccccc-ceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEE
Confidence 6664 3445445544 56888888876443 232 56778888884 689999999999999999865 233333
Q ss_pred ecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce---eEEEeccccceeEEEE--CCCCCcEEEEecCCCCCeE
Q 011916 288 LAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQP---TLRLTEHTAAVKAIAW--SPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~--sp~~~~ll~sg~Gs~d~~I 361 (475)
.-|...|+++..-. ++++|.+.+.+|+|++||++.-++ +.++.+|...-.-+-+ .+... +++++| .|...
T Consensus 295 -lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg-~I~s~G--dDcyt 370 (425)
T KOG2695|consen 295 -LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG-SIFSVG--DDCYT 370 (425)
T ss_pred -EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccc-eEEEcc--CeeEE
Confidence 34889999998877 788999999999999999997766 8888888654443333 44444 444455 89999
Q ss_pred EEEECCCCceeeeecCCC
Q 011916 362 RFWNTSNGHQLNSVDTGS 379 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~~~~ 379 (475)
+||.++.|..+.++....
T Consensus 371 RiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred EEEecccCceeeccCCCC
Confidence 999999999999886543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.7e-05 Score=71.78 Aligned_cols=211 Identities=16% Similarity=0.206 Sum_probs=143.9
Q ss_pred EecCCC--CEEEEEc--CCeEEEEECCCCcEEEEeeCCCCCc-EEEEEEcCCCCEEEEEeC-----CCeEEEEECC-CCe
Q 011916 174 VDWSSQ--NVLAVGL--GTCVYLWTASNSKVTRLCDLGPGDS-VCSVQWTREGSYISVGTN-----LGQVQVWDGT-QCK 242 (475)
Q Consensus 174 l~ws~~--~~la~~~--~~~V~lw~~~~~~~~~~~~~~~~~~-V~~v~~spdg~~la~g~~-----dg~v~iwd~~-~~~ 242 (475)
++.+|. ..++.+- +....+||..+++....+....... --.-.|++||++|++.-. .|.|-|||.. +.+
T Consensus 10 ~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ 89 (305)
T PF07433_consen 10 VAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYR 89 (305)
T ss_pred eeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcE
Confidence 556663 4556655 6689999999999888775422211 225679999999998644 4889999998 678
Q ss_pred eeEEecCCCCceEEEEe--CCCEEEEEe------------------CCCcEEEEECCCCCccEEE--e--cCccCCEEEE
Q 011916 243 RVRTFGGHQTRAGVLAW--NSRILSSGS------------------RDRNILQHDLRVSSDYICK--L--AGHKSEVCGL 298 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~--~~~~l~sgs------------------~dg~I~iwd~~~~~~~~~~--~--~~h~~~V~~l 298 (475)
.+.++..|.-.-..+.+ ++..|+++. .+-++...|.. .+..+.+ + ..|.-.|..+
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~ll~q~~Lp~~~~~lSiRHL 168 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGALLEQVELPPDLHQLSIRHL 168 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC-CCceeeeeecCccccccceeeE
Confidence 88888877766666666 455666552 12334455555 4444444 4 3377789999
Q ss_pred EEcCCCCEEEEEeCCC-------cEEEEECCCCceeEEEe-------ccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 299 KWSHDDRELASGGNDN-------QLLVWNQHSQQPTLRLT-------EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 299 ~~s~~~~~lasg~~Dg-------~I~iwd~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
++..+|..++..-..| .|.+++.. +.+..+. .-...+-+|++++++..+++++- .-+.+.+|
T Consensus 169 a~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP--rGg~~~~~ 244 (305)
T PF07433_consen 169 AVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP--RGGRVAVW 244 (305)
T ss_pred EecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC--CCCEEEEE
Confidence 9999986665543333 23344332 2222221 23567899999999998888875 89999999
Q ss_pred ECCCCceeeeecCCCCeeEEEEcCCC
Q 011916 365 NTSNGHQLNSVDTGSQVCNLAWSKNV 390 (475)
Q Consensus 365 d~~~~~~~~~~~~~~~v~~l~~s~~~ 390 (475)
|..+++.+..... ..+|.++-.+++
T Consensus 245 d~~tg~~~~~~~l-~D~cGva~~~~~ 269 (305)
T PF07433_consen 245 DAATGRLLGSVPL-PDACGVAPTDDG 269 (305)
T ss_pred ECCCCCEeecccc-CceeeeeecCCc
Confidence 9999998877643 346778777777
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-07 Score=82.59 Aligned_cols=144 Identities=14% Similarity=0.125 Sum_probs=95.0
Q ss_pred CCEEEEEcCCeEEEEECCCCc-EEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeeeEEecCCCC
Q 011916 179 QNVLAVGLGTCVYLWTASNSK-VTRLCDLGPGDSVCSVQWTREGSYISVGTN-----LGQVQVWDGTQCKRVRTFGGHQT 252 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~-~~~~~~~~~~~~V~~v~~spdg~~la~g~~-----dg~v~iwd~~~~~~~~~~~~h~~ 252 (475)
+.++.+..|+.+.+.+.+... ........|. .-.+.+....++.+.++.. -+..++|++...+.+..-.....
T Consensus 102 t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~-~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~ 180 (319)
T KOG4714|consen 102 NRVCIGYADGSLAVFSTDKDLALMSRIPSIHS-GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALD 180 (319)
T ss_pred CceEecCCCceEEEEechHHHhhhhhcccccc-cccccceeecccEEecCCcceEeeccceeeecccccccccccccccc
Confidence 467777779999998876511 0111110111 1112233334555544332 23455666554333222222223
Q ss_pred ceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 011916 253 RAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 253 ~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.|.+++-++ +++++|+.||.+.+||.+....+...+..|+.+|..+.|+| ++..|+++++||.+.-||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 488888764 78999999999999999977667777889999999999999 778999999999999999875
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-05 Score=82.03 Aligned_cols=273 Identities=11% Similarity=0.114 Sum_probs=162.2
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCC-----CcEE--EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPG-----DSVC--SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ 251 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~-----~~V~--~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~ 251 (475)
+.+++++.++.|+-.|..+++..-....... ..+. .+... ++..+++++.+|.|.-+|.++++.+..+....
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 4566666789999999999886654433221 0000 11111 22678889999999999999999998876433
Q ss_pred Cc-----e-EEEEeCCCEEEEEe---------CCCcEEEEECCCCCccEEEecCccC--------------------CE-
Q 011916 252 TR-----A-GVLAWNSRILSSGS---------RDRNILQHDLRVSSDYICKLAGHKS--------------------EV- 295 (475)
Q Consensus 252 ~~-----v-~~l~~~~~~l~sgs---------~dg~I~iwd~~~~~~~~~~~~~h~~--------------------~V- 295 (475)
.. + ......+..++.++ .++.+..+|..+ ++.+-....... .|
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~T-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw 219 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVET-GKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW 219 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCC-CceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence 21 1 12223345555554 367888888874 443333322110 01
Q ss_pred EEEEEcCCCCEEEEEeCCC------------------cEEEEECCCCceeEEEeccccce------eEEEEC----CCCC
Q 011916 296 CGLKWSHDDRELASGGNDN------------------QLLVWNQHSQQPTLRLTEHTAAV------KAIAWS----PHQS 347 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~Dg------------------~I~iwd~~~~~~~~~~~~h~~~v------~~l~~s----p~~~ 347 (475)
....+.+.+..++.++.++ .|.-+|..+++.+..+..-.... ....+. -++.
T Consensus 220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~ 299 (488)
T cd00216 220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK 299 (488)
T ss_pred CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence 1233444566777777655 79999999999888764311100 001111 1222
Q ss_pred --cEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEE----------------ecCCCeEEEEEC
Q 011916 348 --SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH----------------GYSQNQIMVWKY 409 (475)
Q Consensus 348 --~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~----------------g~~dg~I~iwd~ 409 (475)
.++..++ .+|.+..+|..+|+.+....... ..+..+| ..+++.. ...+|.|.-+|.
T Consensus 300 ~~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 300 PVPAIVHAP--KNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred eeEEEEEEC--CCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 2445543 89999999999999988765321 1123333 2233210 123678888999
Q ss_pred CCCceEEEecCCC--------cce--EEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 410 PSMAKVSTLTGHS--------LRV--LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 410 ~~~~~~~~l~~h~--------~~V--~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
.+++.+-+..... ... ..+.. .+..|+.++.||.|+.+|..+++......
T Consensus 374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred CCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 9988876665321 111 11222 56688888999999999999998776543
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.9e-07 Score=83.62 Aligned_cols=201 Identities=14% Similarity=0.287 Sum_probs=137.1
Q ss_pred CCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc----EEEecCccC------------CEEEEEEcCCCC--EEEE
Q 011916 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY----ICKLAGHKS------------EVCGLKWSHDDR--ELAS 309 (475)
Q Consensus 250 h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~----~~~~~~h~~------------~V~~l~~s~~~~--~las 309 (475)
....|+++.|+ |.+|++|...|.|.++.-.....+ ...+++|.. .|..|.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34568888885 689999999999999976543322 233455542 578889987543 6677
Q ss_pred EeCCCcEEEEECCCCc-------------------e-----------------------eEEE-eccccceeEEEECCCC
Q 011916 310 GGNDNQLLVWNQHSQQ-------------------P-----------------------TLRL-TEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 310 g~~Dg~I~iwd~~~~~-------------------~-----------------------~~~~-~~h~~~v~~l~~sp~~ 346 (475)
.++|.+|++|.+.... + .... ..|..-+.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 7889999999875320 0 0011 2477778999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCCCce---eeeecC------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc----
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQ---LNSVDT------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA---- 413 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~---~~~~~~------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~---- 413 (475)
..++.+ .|-.|.+|++.--.. +..++. ..-|++..|+|....++.. .++.|.|++-|++...
T Consensus 185 et~lSa----DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmY-SsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 185 ETLLSA----DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMY-SSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred heeeec----cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEE-ecCCCcEEehhhhhhhhccC
Confidence 877764 688999999864321 112221 1347888999976655543 5688999999997321
Q ss_pred --eEEEe----------cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 414 --KVSTL----------TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 414 --~~~~l----------~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.+..+ .+-...|..+.|+++|+++++-+. -+|+|||+.....
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~ 313 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKN 313 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccC
Confidence 11111 122356888999999999987654 5899999986543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.7e-06 Score=83.98 Aligned_cols=214 Identities=13% Similarity=0.199 Sum_probs=147.5
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCc-eEEEEe-CC-CEEEEEeCCCc-----EEEEECCCCC-----
Q 011916 216 QWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTR-AGVLAW-NS-RILSSGSRDRN-----ILQHDLRVSS----- 282 (475)
Q Consensus 216 ~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~l~~-~~-~~l~sgs~dg~-----I~iwd~~~~~----- 282 (475)
+|++.+..+|.|+.+|.|.+.+ ...+.++.+..+... |..+-. ++ .+|++.+.|+. ++|||+....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP 108 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP 108 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence 3678899999999999998887 344555778777777 444433 33 58888777654 8999997431
Q ss_pred ccE--EEecC-----ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC----CCceeEEEeccccceeEEEECCCCCcEEE
Q 011916 283 DYI--CKLAG-----HKSEVCGLKWSHDDRELASGGNDNQLLVWNQH----SQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 283 ~~~--~~~~~-----h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~----~~~~~~~~~~h~~~v~~l~~sp~~~~ll~ 351 (475)
.++ ..+.. ...++++++.+.+-+.+|+|-.+|.|..+.-+ .+....-......+|+++++..++..++.
T Consensus 109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lF 188 (933)
T KOG2114|consen 109 QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLF 188 (933)
T ss_pred ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEE
Confidence 122 12222 34678999999999999999999999988643 11112222235679999999999987433
Q ss_pred EecCCCCCeEEEEECCCCce-eeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-CCCcceEEE
Q 011916 352 SGGGTADRCIRFWNTSNGHQ-LNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-GHSLRVLYL 428 (475)
Q Consensus 352 sg~Gs~d~~I~iwd~~~~~~-~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l 428 (475)
+. .-..|.+|.+....+ ...+ .++..+.|..+++....++++ ....|.+|+......-..+. +|......+
T Consensus 189 v~---Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca---~~e~l~fY~sd~~~~cfaf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 189 VA---TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICA---GSEFLYFYDSDGRGPCFAFEVGEKKEMLVF 262 (933)
T ss_pred EE---ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEe---cCceEEEEcCCCcceeeeecCCCeEEEEEE
Confidence 33 467899999884442 3334 466788888998887767763 46789999998877777777 776554443
Q ss_pred EECCCCCEEEE
Q 011916 429 ATSPDGQTIVT 439 (475)
Q Consensus 429 ~~spdg~~l~s 439 (475)
. -|.+|+.
T Consensus 263 ~---~g~~L~v 270 (933)
T KOG2114|consen 263 S---FGLLLCV 270 (933)
T ss_pred e---cCEEEEE
Confidence 3 2544444
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=84.39 Aligned_cols=235 Identities=14% Similarity=0.105 Sum_probs=165.5
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEee--CCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEecC--CCC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCD--LGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKRVRTFGG--HQT 252 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~--~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~~~~~~~--h~~ 252 (475)
.+-++.++.||.++.|.-..-..+.... ..|...|.+++.+.+|.++.+++. |..++++|+++...+..++- -.+
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg 99 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG 99 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCC
Confidence 4568888999999999876533333321 267788899999999999999887 99999999987665543331 122
Q ss_pred ceEEEEeCC---CEEEE-EeCCCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----
Q 011916 253 RAGVLAWNS---RILSS-GSRDRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS---- 323 (475)
Q Consensus 253 ~v~~l~~~~---~~l~s-gs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~---- 323 (475)
.+..+.-.| ..|++ .-.++.|.++|-..... ....-.-|..+|..+.+++-+..+++....|.|.-|....
T Consensus 100 ~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 100 FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccC
Confidence 222221123 13433 34678999999886553 3344556999999999999999999999999999999873
Q ss_pred --Cce---------eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---------------
Q 011916 324 --QQP---------TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--------------- 377 (475)
Q Consensus 324 --~~~---------~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~--------------- 377 (475)
.+. +..+........++.|+|++..+...+ .|..|+++++++|+.++.++.
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~---~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN---PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccCcccccC---cccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence 111 122233456778999999999776654 799999999999976655421
Q ss_pred ------------------C-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 378 ------------------G-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 378 ------------------~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
+ ..-..+.|...|++|+- |.- =-|++.++.+++.+..+
T Consensus 257 ~~VelgRRmaverelek~~~~~~~~~~fdes~~flly--~t~-~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 257 MHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY--GTI-LGIKVINLDTNTVVRIL 313 (558)
T ss_pred ceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe--ecc-eeEEEEEeecCeEEEEe
Confidence 0 12456778888988887 433 33788888877766544
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.2e-07 Score=61.19 Aligned_cols=39 Identities=38% Similarity=0.647 Sum_probs=36.7
Q ss_pred CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 412 MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 412 ~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
++++.++.+|...|.+|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 357889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.1e-05 Score=73.78 Aligned_cols=252 Identities=17% Similarity=0.243 Sum_probs=145.0
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CC--------------
Q 011916 186 LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GH-------------- 250 (475)
Q Consensus 186 ~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h-------------- 250 (475)
..+.++|||+++++...+... ...+....|+|+|+.+|.... +.|.+++..+++..+.-. +.
T Consensus 21 ~~~~y~i~d~~~~~~~~l~~~--~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITPLTPP--PPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEEETTTTEEEESS-E--ETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred cceeEEEEecCCCceEECcCC--ccccccceeecCCCeeEEEec-CceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 346899999999988777642 567889999999999999875 789999987775443221 20
Q ss_pred --CCceEEEEe--CCCEEEEEeCC-Cc-----------------------------------EEEEECCCCCccEEE-e-
Q 011916 251 --QTRAGVLAW--NSRILSSGSRD-RN-----------------------------------ILQHDLRVSSDYICK-L- 288 (475)
Q Consensus 251 --~~~v~~l~~--~~~~l~sgs~d-g~-----------------------------------I~iwd~~~~~~~~~~-~- 288 (475)
-..-..+.| +++.|+....| .. +.++|+......... .
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H
T ss_pred cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc
Confidence 011234555 34555543221 11 233444422211111 1
Q ss_pred --cCccCCEEEEEEcCCCCEEEEE--eCC---CcEEEEECCCCceeEEEec-cccce---eEEEEC-CCCCcEEEEecCC
Q 011916 289 --AGHKSEVCGLKWSHDDRELASG--GND---NQLLVWNQHSQQPTLRLTE-HTAAV---KAIAWS-PHQSSLLASGGGT 356 (475)
Q Consensus 289 --~~h~~~V~~l~~s~~~~~lasg--~~D---g~I~iwd~~~~~~~~~~~~-h~~~v---~~l~~s-p~~~~ll~sg~Gs 356 (475)
..-...+..+.|.++++.|+.. ..+ ..+.++|..++........ ..+.| ..+.|. +++..++.....+
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 1233457889999998844443 222 2477788877655433332 22222 355554 7777666665422
Q ss_pred CCCeEEEEECCCCceeeeecCCCCeeE-EEEcCCCCeEEEEEec---CCCeEEEEECCCCceEEEecCCCcceEEEEECC
Q 011916 357 ADRCIRFWNTSNGHQLNSVDTGSQVCN-LAWSKNVNELVSTHGY---SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~~~~g~---~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 432 (475)
.-..|.+++..++.........-.|.. +.|+++++.|+.++.. ....|+..++..+..+..++.....-..+.|||
T Consensus 258 G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Sp 337 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSP 337 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-T
T ss_pred CCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECC
Confidence 234566677766664433344455644 7888988887765322 123566667663455666665444446899999
Q ss_pred CCCEEEEE
Q 011916 433 DGQTIVTG 440 (475)
Q Consensus 433 dg~~l~s~ 440 (475)
+|++++-.
T Consensus 338 dg~y~v~~ 345 (353)
T PF00930_consen 338 DGKYYVDT 345 (353)
T ss_dssp TSSEEEEE
T ss_pred CCCEEEEE
Confidence 99988754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00013 Score=69.64 Aligned_cols=232 Identities=13% Similarity=0.106 Sum_probs=150.8
Q ss_pred CeEEEEECCCCcEEEEeeCCCC------CcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEecCCCCceEEEEe
Q 011916 188 TCVYLWTASNSKVTRLCDLGPG------DSVCSVQWTREGSYISVGTN--LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW 259 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~------~~V~~v~~spdg~~la~g~~--dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~ 259 (475)
..|.+||..+-.....+.+... .....++++.||+++++... .-.|.|.|++..+.+.++.. .++..-.-+
T Consensus 67 Dvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-PGC~~iyP~ 145 (342)
T PF06433_consen 67 DVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-PGCWLIYPS 145 (342)
T ss_dssp EEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-TSEEEEEEE
T ss_pred eEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-CCEEEEEec
Confidence 3699999999988877766433 12234678899998888654 46799999999999887752 233333334
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCccEEEec----CccCCE-EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EEec
Q 011916 260 NSRILSSGSRDRNILQHDLRVSSDYICKLA----GHKSEV-CGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL--RLTE 332 (475)
Q Consensus 260 ~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----~h~~~V-~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~--~~~~ 332 (475)
.+.-+.+-|.||.+....+...++...+.. .....+ ..-++...+..++.-+.+|.|+--|+....... .+..
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~ 225 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL 225 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc
Confidence 557788999999999999986666543321 111222 223344455566667888999998887664322 1111
Q ss_pred ----------cccceeEEEECCCCCcEEEEec-C---C-C--CCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEE
Q 011916 333 ----------HTAAVKAIAWSPHQSSLLASGG-G---T-A--DRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 333 ----------h~~~v~~l~~sp~~~~ll~sg~-G---s-~--d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 395 (475)
..+.-.-+++++....|++.-. | + . ...|.++|+.+++.+..+....++.+|..+.+.+=++.
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEE
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEE
Confidence 1223345677766555554421 1 0 1 13588889999999999988888999999998875554
Q ss_pred EEecCCCeEEEEECCCCceEEEecC
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTG 420 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~ 420 (475)
+....++.|.+||..+++.+.++.+
T Consensus 306 ~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 306 ALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEETTTTEEEEEETTT--EEEEE--
T ss_pred EEcCCCCeEEEEeCcCCcEEeehhc
Confidence 3244689999999999999988874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-05 Score=80.07 Aligned_cols=275 Identities=12% Similarity=0.057 Sum_probs=161.3
Q ss_pred ceeccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 011916 157 HKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVW 236 (475)
Q Consensus 157 ~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iw 236 (475)
.++.-+|+-.|+||.. .++|..|.|+|+-+.+.+..+.+..=...+-+.--++...+.++..+..|....|
T Consensus 54 ~~~~v~pg~~deyy~f---------~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~ 124 (635)
T PRK02888 54 GKYEVAPGELDEYYGF---------WSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLN 124 (635)
T ss_pred CcccCCCCCcccEEEE---------eeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccC
Confidence 5667778888888743 4567789999999999887776642111111111122222222211111112222
Q ss_pred ECCCCeeeEEecCCCCc--eEEEEeCCCEEEEEeC-CCcEEEEECCCCCccEEEecCccCCEEE----------------
Q 011916 237 DGTQCKRVRTFGGHQTR--AGVLAWNSRILSSGSR-DRNILQHDLRVSSDYICKLAGHKSEVCG---------------- 297 (475)
Q Consensus 237 d~~~~~~~~~~~~h~~~--v~~l~~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h~~~V~~---------------- 297 (475)
. ..|... -+.=.++|++|+.-.. +..|...+++.-......-....+.+.+
T Consensus 125 g----------D~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~ 194 (635)
T PRK02888 125 G----------DTHHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNG 194 (635)
T ss_pred C----------CcCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCc
Confidence 1 011111 1112235566666543 4444444443211100000111112222
Q ss_pred ---EEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCC-----------------
Q 011916 298 ---LKWSHDDRELASG-GNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT----------------- 356 (475)
Q Consensus 298 ---l~~s~~~~~lasg-~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs----------------- 356 (475)
+-+++||+.+... -..+.+.+.|..+.+...++.- .+....++++|+|+++++++..+
T Consensus 195 e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~ 273 (635)
T PRK02888 195 EFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWV 273 (635)
T ss_pred ccccccCCCCCEeecccceeEEEEEEECccceEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceE
Confidence 2334566544322 2345677788887766665543 23446778888888887775211
Q ss_pred --------------------CCCeEEEEECCC-----CceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 357 --------------------ADRCIRFWNTSN-----GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 357 --------------------~d~~I~iwd~~~-----~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
.++.|.+.|..+ .+.+..+..+.....+.++|||++++++ +..++.+.|+|+.+
T Consensus 274 vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVa-nklS~tVSVIDv~k 352 (635)
T PRK02888 274 VVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIAN-GKLSPTVTVIDVRK 352 (635)
T ss_pred EEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEe-CCCCCcEEEEEChh
Confidence 125688888887 4667777888889999999999999987 66789999999987
Q ss_pred Cce------------EEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 412 MAK------------VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 412 ~~~------------~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.+. +.+.+- .......+|.++|....|.--|..|..|++..
T Consensus 353 ~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 353 LDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 653 344433 23346678999999888888999999999876
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.4e-05 Score=77.75 Aligned_cols=183 Identities=9% Similarity=0.078 Sum_probs=112.5
Q ss_pred EcCCCCEEEEE-eCCCeEEEEECCCCeeeEEecC-CCCceEEEEeCCCEEEEEeCC----CcEEEEECCCCCccEEEecC
Q 011916 217 WTREGSYISVG-TNLGQVQVWDGTQCKRVRTFGG-HQTRAGVLAWNSRILSSGSRD----RNILQHDLRVSSDYICKLAG 290 (475)
Q Consensus 217 ~spdg~~la~g-~~dg~v~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~ 290 (475)
+.+||+.+... -..+.+.+.|.++.+...++.- .......+..++.++++.+.+ .++...+.. ....+..+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~-e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA-ERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccc-cCceEEEEch
Confidence 34455544222 2245677778777776666542 222334444467777666532 122222222 1111111110
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----C-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS----Q-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 291 h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~----~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
.. + .++.++|++...+ ++.|.+.|.++ + +.+..+ .-......+.++|||+++++++. .+.++.+.|
T Consensus 279 ~~--i--ea~vkdGK~~~V~--gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVank--lS~tVSVID 349 (635)
T PRK02888 279 AR--I--EEAVKAGKFKTIG--GSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGK--LSPTVTVID 349 (635)
T ss_pred HH--H--HHhhhCCCEEEEC--CCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCC--CCCcEEEEE
Confidence 00 0 0234577766663 57899999998 3 333333 34566789999999999999976 899999999
Q ss_pred CCCCce------------eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 366 TSNGHQ------------LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 366 ~~~~~~------------~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
+.+.+. +..+..+-.....+|.++|+...+ -+-|.+|..|++..
T Consensus 350 v~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~ayts--lf~dsqv~kwn~~~ 405 (635)
T PRK02888 350 VRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTT--LFLDSQIVKWNIEA 405 (635)
T ss_pred ChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEe--EeecceeEEEehHH
Confidence 988653 455556666778899999875555 67899999999875
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.5e-05 Score=70.56 Aligned_cols=262 Identities=16% Similarity=0.191 Sum_probs=151.0
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEecCCCC-ceE-
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT----------NLGQVQVWDGTQCKRVRTFGGHQT-RAG- 255 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~----------~dg~v~iwd~~~~~~~~~~~~h~~-~v~- 255 (475)
+.|+++|.+++++...+..+. .-.+..+|+++.++++. ..-.|.+||..+-.....+.-... +..
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 489999999999988887443 33567899999888753 234699999999888776653322 222
Q ss_pred -------EEEeCCCEEEEE--eCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC-CC
Q 011916 256 -------VLAWNSRILSSG--SRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH-SQ 324 (475)
Q Consensus 256 -------~l~~~~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~-~~ 324 (475)
.+.-++++++.. +-...|.|.|+. .++.+..+.. .+ |.+.+ | ..+-+.+-+.||.+.-..+. .|
T Consensus 94 ~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~-~~kvv~ei~~-PG--C~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 94 VPYKNMFALSADGKFLYVQNFTPATSVTVVDLA-AKKVVGEIDT-PG--CWLIY-PSGNRGFSMLCGDGSLLTVTLDADG 168 (342)
T ss_dssp S--GGGEEE-TTSSEEEEEEESSSEEEEEEETT-TTEEEEEEEG-TS--EEEEE-EEETTEEEEEETTSCEEEEEETSTS
T ss_pred cccccceEEccCCcEEEEEccCCCCeEEEEECC-CCceeeeecC-CC--EEEEE-ecCCCceEEEecCCceEEEEECCCC
Confidence 222234443333 223345555554 3333333221 11 22222 3 23457788889999999888 55
Q ss_pred ceeEEEec-----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee--eecC-----------CCCeeEEEE
Q 011916 325 QPTLRLTE-----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN--SVDT-----------GSQVCNLAW 386 (475)
Q Consensus 325 ~~~~~~~~-----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~--~~~~-----------~~~v~~l~~ 386 (475)
+...+... ....+..-++...+..++... .+|.|+-.|+....... .+.. .+.-.-+++
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~S---y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~ 245 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVS---YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAY 245 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEB---TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEE
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEe---cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeee
Confidence 55432211 111222334444443344332 78999998887654221 1110 122344677
Q ss_pred cCCCCeEEEE-EecCCC-------eEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEE-eCCCCEEEEecCCCCC
Q 011916 387 SKNVNELVST-HGYSQN-------QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTG-AGDETLRFWNVFPSLK 456 (475)
Q Consensus 387 s~~~~~l~~~-~g~~dg-------~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~-s~Dg~I~iW~~~~~~~ 456 (475)
++..+.|++. +...++ .|.++|+.+.+.+..+.. ...+.+|+.+.|.+ +|++. ..++.|.+||..+++.
T Consensus 246 ~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 246 HAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp ETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred ccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 7766555543 322222 588889999999998873 34578999998766 66554 4588999999999877
Q ss_pred CCCcc
Q 011916 457 APALV 461 (475)
Q Consensus 457 ~~~~~ 461 (475)
...+.
T Consensus 325 ~~~~~ 329 (342)
T PF06433_consen 325 VRSIE 329 (342)
T ss_dssp EEEE-
T ss_pred Eeehh
Confidence 66544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-05 Score=78.45 Aligned_cols=207 Identities=14% Similarity=0.164 Sum_probs=130.9
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe---CC-CeEEEEECCCCeeeEEec-CCCCceEEEEeCCC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT---NL-GQVQVWDGTQCKRVRTFG-GHQTRAGVLAWNSR 262 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~---~d-g~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~ 262 (475)
..+.+-|.+ +.....+. .....+..-+|+|++..++.-. .. ..+.++++.+++....+. ........++.+|+
T Consensus 173 ~~l~~~D~d-g~~~~~l~-~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~ 250 (425)
T COG0823 173 YELALGDYD-GYNQQKLT-DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGS 250 (425)
T ss_pred ceEEEEccC-CcceeEec-ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCC
Confidence 355555655 44444443 3456777889999998766543 22 469999999887666554 11223333444564
Q ss_pred -EEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeEEEecccccee
Q 011916 263 -ILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N--QLLVWNQHSQQPTLRLTEHTAAVK 338 (475)
Q Consensus 263 -~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g--~I~iwd~~~~~~~~~~~~h~~~v~ 338 (475)
++++...||...||-+...+.....+....+.-+.=.|+|||+.++..+.. | .|.++|+..... ..+......-.
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~ 329 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS 329 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc
Confidence 556667788665554433333344455444444567899999998877643 3 577777776654 33333333333
Q ss_pred EEEECCCCCcEEEEecCCCCCe--EEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec
Q 011916 339 AIAWSPHQSSLLASGGGTADRC--IRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~--I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
.-.|+|+|++++.... .+|. |.+.|+.++..+..+........-.|.+++..++..++.
T Consensus 330 ~p~~SpdG~~i~~~~~--~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 330 NPVWSPDGDKIVFESS--SGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred CccCCCCCCEEEEEec--cCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEeccC
Confidence 7899999999888763 3454 777777776666666666666677888999988886443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-05 Score=80.07 Aligned_cols=274 Identities=16% Similarity=0.216 Sum_probs=161.7
Q ss_pred CCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---
Q 011916 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--- 244 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--- 244 (475)
..+++|++-..+.+..++..|.||+|+-.+++......-+..+.+..+..+++..++|+|+..|.|.|+-+.....-
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~ 114 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD 114 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence 45678888777778888889999999999888766654344566677778999999999999999999987663221
Q ss_pred --EEe-cCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC---ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 245 --RTF-GGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS---DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 245 --~~~-~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
... ..|..+|++++| |+..+++|...|+|..-.+.... ...+.+....++|..|... ++.+|++... ..
T Consensus 115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl~--r~ 191 (726)
T KOG3621|consen 115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTLT--RC 191 (726)
T ss_pred eeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhhh--hh
Confidence 111 247889999999 57899999999999998887411 1223344456677777764 3434444332 23
Q ss_pred EEEECCCCceeEEEe--cccc-ceeEEEECCC----CCcEEEEecCCCCCeEEEEECC-CCceeeeecC-----------
Q 011916 317 LVWNQHSQQPTLRLT--EHTA-AVKAIAWSPH----QSSLLASGGGTADRCIRFWNTS-NGHQLNSVDT----------- 377 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~--~h~~-~v~~l~~sp~----~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~~~----------- 377 (475)
.+++.+.+.. .++- ...+ .-...+|-|. .+-.+.++ .-..|+|... .|+.+.+...
T Consensus 192 ~Lc~tE~eti-~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca----RPG~RlWead~~G~V~~Thqfk~ala~~p~p~ 266 (726)
T KOG3621|consen 192 ILCQTEAETI-TQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA----RPGLRLWEADFAGEVIKTHQFKDALARPPAPE 266 (726)
T ss_pred heeecchhHH-HHhcCCCcCCccccceEEeeccccCCCceEEEe----cCCCceEEeecceeEEEeeehhhhhccCCCCc
Confidence 4445443321 1111 1111 1233344433 23334432 4456778654 2444333211
Q ss_pred ---CC-----------C-----eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEE
Q 011916 378 ---GS-----------Q-----VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 378 ---~~-----------~-----v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~ 438 (475)
.+ . ...+.+-..+ .+++ ..+-.|+|+|..+.+.+.-..+ ...|..+.- +|+-|+
T Consensus 267 i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa---~te~Giyv~d~~~~~v~l~se~-~~DI~dVs~--~~neiF 339 (726)
T KOG3621|consen 267 IPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLA---WTEVGIYVFDSNNSQVYLWSEG-GHDILDVSH--CGNEIF 339 (726)
T ss_pred ccCCCcCCccccCCCCCccccccceeEEeecc-eEEE---eecceEEEEEeccceEEEeecC-CCceeEEee--cCceEE
Confidence 00 0 0111111112 2222 1233488888877665544432 234555544 566677
Q ss_pred EEeCCCCEEEEecCCCCC
Q 011916 439 TGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 439 s~s~Dg~I~iW~~~~~~~ 456 (475)
.--.|+.+++..+....+
T Consensus 340 vL~~d~~l~~~sv~s~qr 357 (726)
T KOG3621|consen 340 VLNLDRGLKVESVASRQR 357 (726)
T ss_pred EEecCCceeEEEeehhHH
Confidence 777788888888876654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.2e-07 Score=57.77 Aligned_cols=38 Identities=34% Similarity=0.703 Sum_probs=35.8
Q ss_pred ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 283 DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
+++..+.+|.+.|.+|+|+|++++|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 45778999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.4e-06 Score=84.25 Aligned_cols=182 Identities=14% Similarity=0.225 Sum_probs=131.1
Q ss_pred CCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 251 QTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 251 ~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
...+.|++++++.|+.|+.+|.|++++... .. .+...|... ..+|.++++|+.||+|.|-.+-+.+...++
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~--~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQG--NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCC--cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 346778888999999999999999999862 22 334445443 568999999999999999999888776665
Q ss_pred eccccceeEEEECCC----CCcEEEEecCCCCCeEEEEECC---CCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCe
Q 011916 331 TEHTAAVKAIAWSPH----QSSLLASGGGTADRCIRFWNTS---NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQ 403 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~----~~~ll~sg~Gs~d~~I~iwd~~---~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~ 403 (475)
. ...++.+|+++|+ ...-+++|| ..| +.++.-. ....+..-...++|.++.|. |++++- . +|-.
T Consensus 110 d-f~rpiksial~Pd~~~~~sk~fv~GG--~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAW--a-nd~G 180 (846)
T KOG2066|consen 110 D-FKRPIKSIALHPDFSRQQSKQFVSGG--MAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAW--A-NDDG 180 (846)
T ss_pred e-cCCcceeEEeccchhhhhhhheeecC--cce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEE--e-cCCC
Confidence 4 4678999999998 233566665 566 7776532 22233233567889999996 567766 3 4566
Q ss_pred EEEEECCCCceEEEecCCCcc------eEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 404 IMVWKYPSMAKVSTLTGHSLR------VLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 404 I~iwd~~~~~~~~~l~~h~~~------V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
|+|||..+.+.+..++..... ...+.|.++.+ |+.| ...+|+|..+.
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEe
Confidence 999999999988877653333 34577877654 4444 45579999998
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.43 E-value=7e-08 Score=96.33 Aligned_cols=200 Identities=18% Similarity=0.311 Sum_probs=136.6
Q ss_pred CCCCCCceeEEecCCC---CEEEEEc-CCeEEEEECCCCcEE-EEeeCCCCCcEEEEEEcC-CCCEEEEEeC----CCeE
Q 011916 164 SLQDDFYLNLVDWSSQ---NVLAVGL-GTCVYLWTASNSKVT-RLCDLGPGDSVCSVQWTR-EGSYISVGTN----LGQV 233 (475)
Q Consensus 164 ~~~~d~~v~~l~ws~~---~~la~~~-~~~V~lw~~~~~~~~-~~~~~~~~~~V~~v~~sp-dg~~la~g~~----dg~v 233 (475)
...+-.|+.|++|.-+ -++++|. +|.|.+-......-. ..+..++....++++|++ |.++||+|-. |..+
T Consensus 52 n~sdtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 52 NWSDTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL 131 (783)
T ss_pred hcccCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence 3456678899999854 3666665 788888877654332 233336678899999998 6788888854 5679
Q ss_pred EEEECCCC--ee--eEEecC-CCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCC
Q 011916 234 QVWDGTQC--KR--VRTFGG-HQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDR 305 (475)
Q Consensus 234 ~iwd~~~~--~~--~~~~~~-h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~ 305 (475)
.|||+.++ .+ ...|.+ -.....+++| +..++.+|...+.++++|++... .....-.+..+.++...| .++
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~--~~~~svnTk~vqG~tVdp~~~n 209 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL--DSVSSVNTKYVQGITVDPFSPN 209 (783)
T ss_pred cceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhh--hhhhhhhhhhcccceecCCCCC
Confidence 99999876 11 122222 3345558888 46788899999999999998322 222222344577788888 777
Q ss_pred EEEEEeCCCcEEEEE-CCCC-ceeEEEeccc----cceeEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011916 306 ELASGGNDNQLLVWN-QHSQ-QPTLRLTEHT----AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd-~~~~-~~~~~~~~h~----~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~ 367 (475)
++++-. ||.|.+|| .++- .++..+.... ..+..++|+|....++++.. -..++|+++|+.
T Consensus 210 Y~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~-RdS~tIrlydi~ 275 (783)
T KOG1008|consen 210 YFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLS-RDSITIRLYDIC 275 (783)
T ss_pred ceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhc-cCcceEEEeccc
Confidence 887766 89999999 3332 2222222222 34899999999888887764 356889999975
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0012 Score=59.90 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=73.8
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC--CceEEE
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ--TRAGVL 257 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~--~~v~~l 257 (475)
.++.++..+.+.--|..+|++.-...+ +..|.+-+.- -|++++.|+.+|.+++.++.+|.+...+.... ..-..+
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~ 101 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAIL--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQC 101 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhh--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEE
Confidence 455556678888889998886544333 3344443333 57789999999999999999998877665321 122345
Q ss_pred EeCCCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 258 AWNSRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 258 ~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
++++.++..|+.|++.+..|.+. ...+.+
T Consensus 102 d~~~glIycgshd~~~yalD~~~-~~cVyk 130 (354)
T KOG4649|consen 102 DFDGGLIYCGSHDGNFYALDPKT-YGCVYK 130 (354)
T ss_pred cCCCceEEEecCCCcEEEecccc-cceEEe
Confidence 67899999999999999999983 433333
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00054 Score=63.62 Aligned_cols=194 Identities=13% Similarity=0.180 Sum_probs=115.9
Q ss_pred CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEecCC-CCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQCKRVRTFGGH-QTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
+-...+..++|+|+. .++++....+.|..++. +|+.++.+.-. .+..-.+++ ++.++++.-+++.+.++++....
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence 344569999999975 46667777888888886 57888877633 345667777 33455555568999999884332
Q ss_pred ccE-----EEe-----cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CceeEEEe--------ccccceeEEE
Q 011916 283 DYI-----CKL-----AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS---QQPTLRLT--------EHTAAVKAIA 341 (475)
Q Consensus 283 ~~~-----~~~-----~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~---~~~~~~~~--------~h~~~v~~l~ 341 (475)
..+ ..+ ..++..+-+++|++.++.|+.+-+..-..||.+.. ...+.... .....+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 211 111 12456799999999888888887776666766653 22221111 1234578899
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC----------CCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 342 WSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG----------SQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 342 ~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~----------~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
++|....|++... ....|..+| .+|+.+..+... .+.-.++|.++|+..++ + +.+..++|
T Consensus 178 ~~p~t~~lliLS~--es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv--s-EpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSD--ESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV--S-EPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEET--TTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE--E-TTTEEEEE
T ss_pred EcCCCCeEEEEEC--CCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE--c-CCceEEEe
Confidence 9998877888765 899999999 678877766422 36889999999977776 3 56666655
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00081 Score=67.77 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=84.9
Q ss_pred ceeEEEECCCCCcEEEEecC--CCCC----eEEEEECCCCce----eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 336 AVKAIAWSPHQSSLLASGGG--TADR----CIRFWNTSNGHQ----LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~G--s~d~----~I~iwd~~~~~~----~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
...++.|+-...+.+.+-.- +.+| ...+|++...+. +..+...+.+.+++++|+...++. |+.||.|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvl--GC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVL--GCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEE--EecCCeEE
Confidence 34566776644444333210 0122 234566554432 234567899999999999999999 99999999
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+||...+.. .+..+.-.++.++|+|+|.++++|+.-|.|.+||+.-+...-.
T Consensus 285 LyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 285 LYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQ 336 (545)
T ss_pred EEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCcccee
Confidence 999876533 3334556688999999999999999999999999986665443
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=82.88 Aligned_cols=210 Identities=14% Similarity=0.057 Sum_probs=149.6
Q ss_pred CCCCceEEEEeC-CCEEEEEeCCCcEEEEECCC--CCccEEEecCccCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCC
Q 011916 249 GHQTRAGVLAWN-SRILSSGSRDRNILQHDLRV--SSDYICKLAGHKSEVCGLKWSHDDRELASGGN-DNQLLVWNQHSQ 324 (475)
Q Consensus 249 ~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~--~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd~~~~ 324 (475)
.|...|+.+... .+++.+++.||.++.|.-.. .-+.+..+..|...|.+++.+.++.++.+++. |..++++|+.+-
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeecc
Confidence 367777776664 68999999999999997652 12345557788899999999999999999887 999999999875
Q ss_pred ceeEEEeccccceeEEEE--CCC-CCcEEEEecCCCCCeEEEEECCCCceeeee---cCCCCeeEEEEcCCCCeEEEEEe
Q 011916 325 QPTLRLTEHTAAVKAIAW--SPH-QSSLLASGGGTADRCIRFWNTSNGHQLNSV---DTGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 325 ~~~~~~~~h~~~v~~l~~--sp~-~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~~~g 398 (475)
..+..++- ......+.| ++. -..+++.+ -..++.|.++|-....+...+ .|-++|..+.+.+.+..+++ .
T Consensus 87 DminmiKL-~~lPg~a~wv~skGd~~s~IAVs-~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS--i 162 (558)
T KOG0882|consen 87 DMINMIKL-VDLPGFAEWVTSKGDKISLIAVS-LFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS--I 162 (558)
T ss_pred chhhhccc-ccCCCceEEecCCCCeeeeEEee-cccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee--c
Confidence 54322221 111122233 222 11233333 237899999997655433222 36789999999999999998 7
Q ss_pred cCCCeEEEEECCC------CceEEE---------ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCccc
Q 011916 399 YSQNQIMVWKYPS------MAKVST---------LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 399 ~~dg~I~iwd~~~------~~~~~~---------l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~ 462 (475)
...|.|.-|..+. .+.... +........++.|+|+|..+.+-+.|..|+++.+.++...+.+.+
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhc
Confidence 7889999998762 111111 122345578899999999999999999999999999987766443
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.8e-05 Score=78.49 Aligned_cols=180 Identities=17% Similarity=0.324 Sum_probs=128.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEe
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 288 (475)
.+.++|.+++ +++|+.|+.+|.|++++....- .+...|... .-.|.++++|+.||+|.|-.+-++. ...++
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----~~~Gey~asCS~DGkv~I~sl~~~~-~~~~~ 109 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS----ILEGEYVASCSDDGKVVIGSLFTDD-EITQY 109 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc----ccCCceEEEecCCCcEEEeeccCCc-cceeE
Confidence 3556666665 6799999999999999965432 444445444 4458999999999999999887433 33333
Q ss_pred cCccCCEEEEEEcCC-----CCEEEEEeCCCcEEEEECC---CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCe
Q 011916 289 AGHKSEVCGLKWSHD-----DRELASGGNDNQLLVWNQH---SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC 360 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~-----~~~lasg~~Dg~I~iwd~~---~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~ 360 (475)
....++.+++++|+ .+.+++||.-| +.++.-+ ....+ .+....++|.++.|..+ +++-+ .|--
T Consensus 110 -df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g~---lIAWa---nd~G 180 (846)
T KOG2066|consen 110 -DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRGN---LIAWA---NDDG 180 (846)
T ss_pred -ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecCc---EEEEe---cCCC
Confidence 34567999999997 56899999988 7777643 12222 45567899999999744 66654 5777
Q ss_pred EEEEECCCCceeeeecCCC-------CeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 361 IRFWNTSNGHQLNSVDTGS-------QVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 361 I~iwd~~~~~~~~~~~~~~-------~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
|++||+.+++.+..+.... -.+.+.|.++.+.++ |. ..+|.|..++
T Consensus 181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI---GW-~d~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI---GW-GDSVKICSIK 233 (846)
T ss_pred cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE---ec-CCeEEEEEEe
Confidence 9999999999888875332 356788887766555 54 3457777776
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0011 Score=64.59 Aligned_cols=279 Identities=15% Similarity=0.150 Sum_probs=138.5
Q ss_pred CceeEEecCCC--CEEEEEc---CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 169 FYLNLVDWSSQ--NVLAVGL---GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~---~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
+|...=+|.++ .+|.++. ...+++.|+.+++..++.+.. ........++++++.++.......|.-.|+++.+.
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~-g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP-GDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS--B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E
T ss_pred eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC-CCCccceEEecCCCeEEEEECCCeEEEEECCcCcE
Confidence 44444556654 5666665 457999999999999998742 22233566789888887766667899999999887
Q ss_pred eEEecCCCCceEEEEe--C--CCEEEEEeC----------------------CCcEEEEECCCCCccEEEecCccCCEEE
Q 011916 244 VRTFGGHQTRAGVLAW--N--SRILSSGSR----------------------DRNILQHDLRVSSDYICKLAGHKSEVCG 297 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~--~~~l~sgs~----------------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 297 (475)
...+......+....| + +..++..-. ...|.-.|+. .++ ...+......+..
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~-tG~-~~~v~~~~~wlgH 192 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK-TGE-RKVVFEDTDWLGH 192 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT-T---EEEEEEESS-EEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC-CCc-eeEEEecCccccC
Confidence 7777766666655555 2 334332211 1224444554 222 3333334556778
Q ss_pred EEEcC-CCCEEEEEeC---CCc-EEEEECCC-CceeEEEecc--ccceeEEEECCCCCcEEEEec--CCCCCeEEEEECC
Q 011916 298 LKWSH-DDRELASGGN---DNQ-LLVWNQHS-QQPTLRLTEH--TAAVKAIAWSPHQSSLLASGG--GTADRCIRFWNTS 367 (475)
Q Consensus 298 l~~s~-~~~~lasg~~---Dg~-I~iwd~~~-~~~~~~~~~h--~~~v~~l~~sp~~~~ll~sg~--Gs~d~~I~iwd~~ 367 (475)
+.|+| |..+|+.|-+ +.. -+||-+++ +.....+..+ ...+..=-|.|||..+...+. |..+..|.-+|..
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 89999 4556666543 221 35665542 2222333222 233455569999998776432 3356678889999
Q ss_pred CCceeeeecCCCCeeEEEEcCCCCeEEEEEecC---------------CCeEEEEECCCCceEE--E-------ecCCCc
Q 011916 368 NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYS---------------QNQIMVWKYPSMAKVS--T-------LTGHSL 423 (475)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~---------------dg~I~iwd~~~~~~~~--~-------l~~h~~ 423 (475)
+++........ ....+.-+++|++++-= |+. +--|++++...+.... . +.+|..
T Consensus 273 t~~~~~~~~~p-~~~H~~ss~Dg~L~vGD-G~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q 350 (386)
T PF14583_consen 273 TGERRRLMEMP-WCSHFMSSPDGKLFVGD-GGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQ 350 (386)
T ss_dssp T--EEEEEEE--SEEEEEE-TTSSEEEEE-E-------------------EEEEEETTTTEEEEEEE-------BTTBSS
T ss_pred CCCceEEEeCC-ceeeeEEcCCCCEEEec-CCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCc
Confidence 88765433222 34456667888877652 221 1146678887655321 1 111111
Q ss_pred -ceEEEEECCCCCEEEE-EeCCCCEEEEecC
Q 011916 424 -RVLYLATSPDGQTIVT-GAGDETLRFWNVF 452 (475)
Q Consensus 424 -~V~~l~~spdg~~l~s-~s~Dg~I~iW~~~ 452 (475)
.=-...|+|||++++- +...|...||-+.
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 1245789999997665 5557877777554
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0025 Score=63.76 Aligned_cols=263 Identities=15% Similarity=0.137 Sum_probs=173.1
Q ss_pred EEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEecCCCCceEEEEe--CC-CEEE
Q 011916 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NS-RILS 265 (475)
Q Consensus 190 V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~ 265 (475)
+.+++..+........+ ......+...+++..+.+... ...+.+.+................-..++. .+ +.++
T Consensus 13 ~~v~~~~~~~~~~~~~~--~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv 90 (381)
T COG3391 13 VSVINTGTNKVTAAISL--GRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYV 90 (381)
T ss_pred eEEEeecccEEEEEeec--CCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEE
Confidence 66777666666666543 235667788888865554433 234555554422222211111122233444 33 4666
Q ss_pred EEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEeccccceeEEEE
Q 011916 266 SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN---DNQLLVWNQHSQQPTLRLTEHTAAVKAIAW 342 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~---Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~ 342 (475)
....+..|.+.|............+. ....++++++++.+.++.. ++.+.+.|..+.+.+........+ ..+++
T Consensus 91 ~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~ 167 (381)
T COG3391 91 TTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAV 167 (381)
T ss_pred ecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEE
Confidence 66667999999976333322222232 5678999999987777655 689999999988887775443344 89999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCceee-----eecCCCCeeEEEEcCCCCeEEEEEecC-CCeEEEEECCCCceEE
Q 011916 343 SPHQSSLLASGGGTADRCIRFWNTSNGHQLN-----SVDTGSQVCNLAWSKNVNELVSTHGYS-QNQIMVWKYPSMAKVS 416 (475)
Q Consensus 343 sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~-----~~~~~~~v~~l~~s~~~~~l~~~~g~~-dg~I~iwd~~~~~~~~ 416 (475)
.|+|..++++-. .++.|.+.|..+..... ..........+.++++|++++++.... ++.+...|..++....
T Consensus 168 ~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~ 245 (381)
T COG3391 168 DPDGNKVYVTNS--DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA 245 (381)
T ss_pred CCCCCeEEEEec--CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence 999998888764 79999999987766663 234455678899999999887753322 2689999998887766
Q ss_pred Ee-cCCCcceEEEEECCCCCEEEEEeC-CCCEEEEecCCCCCCCC
Q 011916 417 TL-TGHSLRVLYLATSPDGQTIVTGAG-DETLRFWNVFPSLKAPA 459 (475)
Q Consensus 417 ~l-~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~~~~~~~ 459 (475)
.. .........+..+|+|..+.+... .+.+.+-|.........
T Consensus 246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred eccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 52 211115667899999999888744 47888888777655443
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0012 Score=68.28 Aligned_cols=233 Identities=9% Similarity=0.096 Sum_probs=140.9
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCC-cEEEEEEcC--CCCEEEEEe---------CCCeEEEEECCCCeeeEE
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGD-SVCSVQWTR--EGSYISVGT---------NLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~-~V~~v~~sp--dg~~la~g~---------~dg~v~iwd~~~~~~~~~ 246 (475)
+.+++++.++.|+-+|.++++..-........ .-..+.-+| .+..+++++ .+|.|..+|..+++.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 66777778999999999999977665542211 000111122 234566664 368899999999998887
Q ss_pred ecCCCC--------------------ceE-EEEeC--CCEEEEEeCCC------------------cEEEEECCCCCccE
Q 011916 247 FGGHQT--------------------RAG-VLAWN--SRILSSGSRDR------------------NILQHDLRVSSDYI 285 (475)
Q Consensus 247 ~~~h~~--------------------~v~-~l~~~--~~~l~sgs~dg------------------~I~iwd~~~~~~~~ 285 (475)
+..... .+. ..+.+ +..++.++.++ .|.-+|..+ ++..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~t-G~~~ 269 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADT-GKVK 269 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCC-CCEE
Confidence 653211 010 12232 46777777665 688888874 4433
Q ss_pred EEec--CccC--------C-EEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEE
Q 011916 286 CKLA--GHKS--------E-VCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 286 ~~~~--~h~~--------~-V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~ 351 (475)
-... .|.. . +..+. .-++. .++.++.+|.++..|.++++.+...... ...++..| ..+++
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv 343 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL 343 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence 3322 1210 0 11111 11333 5778888999999999999988765432 12234444 22333
Q ss_pred Eec---------------CCCCCeEEEEECCCCceeeeecCC---------CCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 352 SGG---------------GTADRCIRFWNTSNGHQLNSVDTG---------SQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 352 sg~---------------Gs~d~~I~iwd~~~~~~~~~~~~~---------~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
... ...++.+.-.|+.+|+.+...... .....-...-.+..|++ ++.+|.|+.+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~--g~~dG~l~al 421 (488)
T cd00216 344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA--GAADGYFRAF 421 (488)
T ss_pred ccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE--ECCCCeEEEE
Confidence 110 114688999999999998887654 11111111124566777 7789999999
Q ss_pred ECCCCceEEEecC
Q 011916 408 KYPSMAKVSTLTG 420 (475)
Q Consensus 408 d~~~~~~~~~l~~ 420 (475)
|..+++.+.+.+-
T Consensus 422 d~~tG~~lW~~~~ 434 (488)
T cd00216 422 DATTGKELWKFRT 434 (488)
T ss_pred ECCCCceeeEEEC
Confidence 9999999888764
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=6e-05 Score=77.98 Aligned_cols=264 Identities=14% Similarity=0.206 Sum_probs=156.8
Q ss_pred ceeEEecCCC-CEEEEEc-----CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 170 YLNLVDWSSQ-NVLAVGL-----GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~-----~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
.....+|+|. -++|++. +|.|.||- ++|+...-. .-.-.+++++|+|..-.|+.|-.-|.+.+|...+.+.
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V--t~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~ 93 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV--TYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET 93 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc--ccceehhhhccChHHHHHhhccccceeEEEecCCcee
Confidence 3455789986 5776654 68888884 455532222 2234567899999999999999999999999888777
Q ss_pred eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccE-----------------EEecCc--------cCCE-
Q 011916 244 VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYI-----------------CKLAGH--------KSEV- 295 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~-----------------~~~~~h--------~~~V- 295 (475)
-.....|...|..+.| +|..++++..-|.+.+|.....++.. ..+... +..|
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVt 173 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVT 173 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhcc
Confidence 7777789999999999 47999999999999999876332211 011000 0000
Q ss_pred ---EEE----EE-------------cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEe--
Q 011916 296 ---CGL----KW-------------SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASG-- 353 (475)
Q Consensus 296 ---~~l----~~-------------s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg-- 353 (475)
.++ -| .|+|..++.++.+|+|+-.|-.. +.....+.. +. ..+-|.+....+++.-
T Consensus 174 gDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq~g-~~~~V~k~d-S~-vQmLf~~~~eai~~i~e~ 250 (1416)
T KOG3617|consen 174 GDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQNG-RQRTVHKLD-SE-VQMLFMGYCEAISIIIEF 250 (1416)
T ss_pred CchhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcCCC-cEEEEEEcc-ch-HHHHHhcccceEEEEeee
Confidence 000 11 34677788888888888877432 222222110 00 1112222111111110
Q ss_pred ----------c---------------CCCCCeEEEEECC---CCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 354 ----------G---------------GTADRCIRFWNTS---NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 354 ----------~---------------Gs~d~~I~iwd~~---~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
. |...|.|.+=... .......+..+..+.+++++..+..|.. |...|.+.
T Consensus 251 lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a--gt~~gnv~ 328 (1416)
T KOG3617|consen 251 LRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA--GTKEGNVT 328 (1416)
T ss_pred ceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEe--cccCCcEE
Confidence 0 0011111111100 0011122235667999999999988888 99999999
Q ss_pred EEEC-CC------CceEEEecC---CCcceEEEEECCCCCEEEEEe
Q 011916 406 VWKY-PS------MAKVSTLTG---HSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 406 iwd~-~~------~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s 441 (475)
+|.- +. +.-...+.+ ..+.|..+.|.|-...++.-+
T Consensus 329 ~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 329 IWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred EeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhh
Confidence 9963 22 122344443 446799999998655554443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0002 Score=77.17 Aligned_cols=202 Identities=13% Similarity=0.164 Sum_probs=134.1
Q ss_pred CCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC----CC-
Q 011916 251 QTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ----HS- 323 (475)
Q Consensus 251 ~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~----~~- 323 (475)
...|.++.| ++..++.+..+|.|.+.|..+. .......-...|.+++||||++.++..+.+++|.+-+- -.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~--~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL--ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc--ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhc
Confidence 357888888 5788999999999999987632 23333445677999999999999999988877766432 11
Q ss_pred ------------------CceeEEEeccc---------------------cceeEEEECCCCCcEEEEec--CCCCCeEE
Q 011916 324 ------------------QQPTLRLTEHT---------------------AAVKAIAWSPHQSSLLASGG--GTADRCIR 362 (475)
Q Consensus 324 ------------------~~~~~~~~~h~---------------------~~v~~l~~sp~~~~ll~sg~--Gs~d~~I~ 362 (475)
|+....|.+.. +.=..|.|--||.+++++.- .+..+.|+
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rkir 225 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIR 225 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEE
Confidence 11111222111 11245899999997766432 11238999
Q ss_pred EEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCc---eEEEecCCCcceEEEEECCCCCEE
Q 011916 363 FWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMA---KVSTLTGHSLRVLYLATSPDGQTI 437 (475)
Q Consensus 363 iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~---~~~~l~~h~~~V~~l~~spdg~~l 437 (475)
+||.. |..-..- ...+.-.+++|-|.|..+++.... +++.|.+|.-...+ -...+......|..++|+.++..|
T Consensus 226 V~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 226 VYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred Eeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence 99977 4433222 233456789999999999886432 45568888854322 222223334458999999999999
Q ss_pred EE---EeCCCCEEEEecCCCC
Q 011916 438 VT---GAGDETLRFWNVFPSL 455 (475)
Q Consensus 438 ~s---~s~Dg~I~iW~~~~~~ 455 (475)
++ ......|++|-+.+..
T Consensus 305 Av~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred eeeecccccceEEEEEecCeE
Confidence 88 5555569999886543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=6.8e-05 Score=77.59 Aligned_cols=109 Identities=18% Similarity=0.313 Sum_probs=85.1
Q ss_pred cEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCcc
Q 011916 211 SVCSVQWTREGSYISVGTN----LGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~----dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
.-+-..|+|...+||+++. .|.|.||- ++|++-+... ..-.+++++|++ -.|+.|-.-|.+.+|... ..+.
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~-~~e~ 93 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTN-TTET 93 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecC-Ccee
Confidence 3344579999999999875 48898885 5666544332 233467799987 467888889999999886 4444
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
-.....|..+|..+.||++|..|+++..-|.|.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 55566799999999999999999999999999999876
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00017 Score=71.88 Aligned_cols=238 Identities=16% Similarity=0.207 Sum_probs=135.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-------------------------------------------eEEe
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR-------------------------------------------VRTF 247 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~-------------------------------------------~~~~ 247 (475)
.|+.+.|+++..-|++|...|.|.||.....+. ...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 588999999988999999999999986432110 0112
Q ss_pred cCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEE--ecC------ccCCEEEEEEcC-----CC---CEEEEE
Q 011916 248 GGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICK--LAG------HKSEVCGLKWSH-----DD---RELASG 310 (475)
Q Consensus 248 ~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~--~~~------h~~~V~~l~~s~-----~~---~~lasg 310 (475)
....+.|++++.+ =.+++.|..+|.+.|.|+| ....+.. +.. ....|+++.|+- |+ -.|++|
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~R-GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLR-GPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETT-TTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECC-CCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 2346788888885 4899999999999999998 4443333 112 234688888863 33 378899
Q ss_pred eCCCcEEEEECCC---Ccee----EEEeccccceeEEE-ECCC-C-------------------CcEEEEecCCCCCeEE
Q 011916 311 GNDNQLLVWNQHS---QQPT----LRLTEHTAAVKAIA-WSPH-Q-------------------SSLLASGGGTADRCIR 362 (475)
Q Consensus 311 ~~Dg~I~iwd~~~---~~~~----~~~~~h~~~v~~l~-~sp~-~-------------------~~ll~sg~Gs~d~~I~ 362 (475)
.+.|.+.+|.+.- +... .....+.+.|..|. ++.+ | +.+++.. .+..++
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv---Se~~ir 238 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV---SESDIR 238 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----SSEEE
T ss_pred eCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE---cccceE
Confidence 9999999998751 2111 11123556665554 3211 1 1233333 488999
Q ss_pred EEECCCCceeeeecCCC-CeeEEEEc-----CCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC----cceEEEEECC
Q 011916 363 FWNTSNGHQLNSVDTGS-QVCNLAWS-----KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS----LRVLYLATSP 432 (475)
Q Consensus 363 iwd~~~~~~~~~~~~~~-~v~~l~~s-----~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~----~~V~~l~~sp 432 (475)
++...+.+......... ....+.+- ..+..|++ -..+|.|++|.++..+.+..+.-.. ..+....+++
T Consensus 239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~--l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVC--LFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEE--EETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred EEeCCCCcccceeeccccccceEEEEeecccCCceEEEE--EECCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence 99998888776654221 22234442 24555555 5689999999999999988876532 3455678899
Q ss_pred CCCEEEEEeCCCCEEEEecCCCC
Q 011916 433 DGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+|+.++-.+.. .+.++.+....
T Consensus 317 ~Gdi~~~~gps-E~~l~sv~~~~ 338 (395)
T PF08596_consen 317 NGDIFYWTGPS-EIQLFSVWGEG 338 (395)
T ss_dssp TS-EEEE-SSS-EEEEEEEES--
T ss_pred CCCEEEEeCcc-cEEEEEEEccC
Confidence 99988777554 45555554443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00093 Score=67.59 Aligned_cols=218 Identities=10% Similarity=0.120 Sum_probs=120.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEE-ECCCCCccEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQH-DLRVSSDYIC 286 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iw-d~~~~~~~~~ 286 (475)
......+.++|+|+++++ +.+|...|+.....+.... +....++|. .+.+++-..+++|.|+ ++. .....
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~--~~~~k 103 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNRYAVLESSSTIKIYKNFK--NEVVK 103 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSEEEEE-TTS-EEEEETTE--E-TT-
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCccEEEEECCCeEEEEEcCc--cccce
Confidence 345779999999999999 5568888988544443322 334556774 4677887778999996 443 12211
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.+... ..+..|-. |.+|+..+.+ .|.+||+.+++.+..+... +|..+.|++++..++..+ +..+.+++.
T Consensus 104 ~i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t----~~~i~il~~ 172 (443)
T PF04053_consen 104 SIKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT----KDSIYILKY 172 (443)
T ss_dssp ----S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-----S-SEEEEEE
T ss_pred EEcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe----CCeEEEEEe
Confidence 22111 12444432 8888887764 8999999999999888643 489999999999777763 667888775
Q ss_pred CCC-----------ceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC
Q 011916 367 SNG-----------HQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 367 ~~~-----------~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 434 (475)
... ..+..+. ....|.+.+|..+ .++-+ ..+.|+. +..|+. ..+..-..++.=+.+.+..
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYt---T~~~lkY--l~~Ge~-~~i~~ld~~~yllgy~~~~ 244 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYT---TSNHLKY--LVNGET-GIIAHLDKPLYLLGYLPKE 244 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE----TTEEEE--EETTEE-EEEEE-SS--EEEEEETTT
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEE---cCCeEEE--EEcCCc-ceEEEcCCceEEEEEEccC
Confidence 433 0223332 3678899999877 33332 2336665 333332 2222223455556677777
Q ss_pred CEEEEEeCCCCEEEEecCC
Q 011916 435 QTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~ 453 (475)
..+.....|+.|..+.++.
T Consensus 245 ~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 245 NRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp TEEEEE-TT--EEEEE--H
T ss_pred CEEEEEECCCCEEEEEECH
Confidence 7888888999998887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-06 Score=90.16 Aligned_cols=197 Identities=14% Similarity=0.168 Sum_probs=143.5
Q ss_pred CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC--cE
Q 011916 241 CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN--QL 316 (475)
Q Consensus 241 ~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg--~I 316 (475)
.+..+++..|....+|++|. .+.|+.|+..|.|+++++. .+........|...|+-+.=+.||..+++.+.-. ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~-sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVS-SGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEcc-CccccccccccccccccccccCCcceeeeeccccCchH
Confidence 34456677888999999996 4899999999999999998 6677778889999999999999998777665433 46
Q ss_pred EEEECCC-CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----CCCCeeEEEEcCCC
Q 011916 317 LVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-----TGSQVCNLAWSKNV 390 (475)
Q Consensus 317 ~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~s~~~ 390 (475)
.+|++.. +.+.+.|.+ -.++.|+..-..-+. |+......+||+.|+..+.++- ....-....|+|+.
T Consensus 1170 aLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~---gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE----DKAVKFSNSLQFRAL---GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred HHhccccccCccccccc----cceeehhhhHHHHHh---cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence 7899874 445555543 357788876443333 3466789999999998877642 12334678899998
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
..++- || .+||.+..+.+..+...+.. ..=.|+|.|..++.-++ |||+.+-....
T Consensus 1243 ~LIln-----dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINSE-----IwD~RTF~lLh 1297 (1516)
T KOG1832|consen 1243 TLILN-----DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINSE-----IWDMRTFKLLH 1297 (1516)
T ss_pred ceEee-----Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeech-----hhhhHHHHHHh
Confidence 87764 44 47999888777666544422 22358999998887764 78887655443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00073 Score=68.37 Aligned_cols=220 Identities=13% Similarity=0.158 Sum_probs=118.1
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.++|...+.++|+ +.++++.+|.-.|+.......... +.-...+|.++++ +|+-..+++|.|+.--+.+...
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~------G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k 103 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF------GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVK 103 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE------EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc------CceeEEEEecCcc-EEEEECCCeEEEEEcCccccce
Confidence 4566778999986 789999999999998554443332 2334678998555 6666668899997433333322
Q ss_pred EecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-
Q 011916 246 TFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ- 324 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~- 324 (475)
.+... ..+..+-. |.+|...+.+ .|.+||+. .+..+..+... .|..+.|+++|+++|..+.+ .++|++....
T Consensus 104 ~i~~~-~~~~~If~-G~LL~~~~~~-~i~~yDw~-~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~ 176 (443)
T PF04053_consen 104 SIKLP-FSVEKIFG-GNLLGVKSSD-FICFYDWE-TGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEA 176 (443)
T ss_dssp ----S-S-EEEEE--SSSEEEEETT-EEEEE-TT-T--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHH
T ss_pred EEcCC-cccceEEc-CcEEEEECCC-CEEEEEhh-HcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchh
Confidence 33311 12333332 7777777655 89999998 56777777643 38999999999999999865 6788775433
Q ss_pred ----------ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEE
Q 011916 325 ----------QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 325 ----------~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 394 (475)
.....+......|.+..|..+ .++.+. ...|+. +..|+.-..-....++.-+...+..+.++
T Consensus 177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT----~~~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly 248 (443)
T PF04053_consen 177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT----SNHLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLY 248 (443)
T ss_dssp HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-----TTEEEE--EETTEEEEEEE-SS--EEEEEETTTTEEE
T ss_pred cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc----CCeEEE--EEcCCcceEEEcCCceEEEEEEccCCEEE
Confidence 123333333678999999876 344442 236666 33444332222344566666666656666
Q ss_pred EEEecCCCeEEEEECC
Q 011916 395 STHGYSQNQIMVWKYP 410 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~ 410 (475)
+ ...++.|..+.+.
T Consensus 249 ~--~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 249 L--IDRDGNVISYELD 262 (443)
T ss_dssp E--E-TT--EEEEE--
T ss_pred E--EECCCCEEEEEEC
Confidence 6 4566666666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0034 Score=59.78 Aligned_cols=224 Identities=17% Similarity=0.171 Sum_probs=133.6
Q ss_pred CCCEEEEEcCCeEEEEEC-CCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe---------
Q 011916 178 SQNVLAVGLGTCVYLWTA-SNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF--------- 247 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~-~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~--------- 247 (475)
.+.++.++.+| |++++. ......+... ...|..+...++-+.|++-+. +.+.++++.........
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~---~~~I~ql~vl~~~~~llvLsd-~~l~~~~L~~l~~~~~~~~~~~~~~~ 81 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK---LSSITQLSVLPELNLLLVLSD-GQLYVYDLDSLEPVSTSAPLAFPKSR 81 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee---cceEEEEEEecccCEEEEEcC-CccEEEEchhhccccccccccccccc
Confidence 34555555555 999999 3344444443 334999999998777666554 99999998754333311
Q ss_pred -----cCCCCceEEEE----eCCCEEEEEeCCCcEEEEECCCCC----ccEEEecCccCCEEEEEEcCCCCEEEEEeCCC
Q 011916 248 -----GGHQTRAGVLA----WNSRILSSGSRDRNILQHDLRVSS----DYICKLAGHKSEVCGLKWSHDDRELASGGNDN 314 (475)
Q Consensus 248 -----~~h~~~v~~l~----~~~~~l~sgs~dg~I~iwd~~~~~----~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg 314 (475)
-.....+..++ ..+...+.....+.|.+|...... ...+.+. -...+.+++|. ++.++.|..+
T Consensus 82 ~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~- 157 (275)
T PF00780_consen 82 SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK- 157 (275)
T ss_pred cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-
Confidence 11233445555 133344444445589988887431 2223332 34778999998 5578887754
Q ss_pred cEEEEECCCCceeEEEecc------------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee--eecCCCC
Q 011916 315 QLLVWNQHSQQPTLRLTEH------------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN--SVDTGSQ 380 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~--~~~~~~~ 380 (475)
...+.|+.++.....+... ..++..+.. +++..|++ .|..-.+.|. .|+... .+.-...
T Consensus 158 ~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-----~~~~g~fv~~-~G~~~r~~~i~W~~~ 230 (275)
T PF00780_consen 158 GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-----YDNIGVFVNK-NGEPSRKSTIQWSSA 230 (275)
T ss_pred ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-----ecceEEEEcC-CCCcCcccEEEcCCc
Confidence 5888999876654333211 112333333 34454444 3555555554 444433 4444556
Q ss_pred eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 381 VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
+..+++. ..+|++. .++.|.||++.+++.++.+....
T Consensus 231 p~~~~~~--~pyli~~---~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 231 PQSVAYS--SPYLIAF---SSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred hhEEEEE--CCEEEEE---CCCEEEEEECcCCcEEEEEECCC
Confidence 6667664 4577763 45779999999999988887544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.001 Score=64.95 Aligned_cols=211 Identities=15% Similarity=0.191 Sum_probs=128.9
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC---C----CCEEEEEeC---------C-CeEEEEECCCC----eeeEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR---E----GSYISVGTN---------L-GQVQVWDGTQC----KRVRT 246 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp---d----g~~la~g~~---------d-g~v~iwd~~~~----~~~~~ 246 (475)
+.|+|.|..+.+.+..+.+...+.+.+++... + ..+|++|+. . |.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 47899999999988888887777777766433 2 478888865 2 89999999884 22222
Q ss_pred e--cCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEE-EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 247 F--GGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYIC-KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 247 ~--~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
+ ....+.|++++--+..|+++. ++.|.+|++........ ........+.++... +++++.|.....|.++..+.
T Consensus 82 i~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~ 158 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE 158 (321)
T ss_dssp EEEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET
T ss_pred EEEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc
Confidence 2 245788999987444444443 48999999985551222 222233366776665 55999999888888775443
Q ss_pred -CceeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-------Cc----eeeeecCCCCeeEE---EE
Q 011916 324 -QQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-------GH----QLNSVDTGSQVCNL---AW 386 (475)
Q Consensus 324 -~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-------~~----~~~~~~~~~~v~~l---~~ 386 (475)
...+..+. .....+.++.+-+++..+++ + +.+|.+.++.... +. ....+..+..|+++ .+
T Consensus 159 ~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~-~--D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l 235 (321)
T PF03178_consen 159 ENNKLILVARDYQPRWVTAAEFLVDEDTIIV-G--DKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSL 235 (321)
T ss_dssp TTE-EEEEEEESS-BEEEEEEEE-SSSEEEE-E--ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--S
T ss_pred cCCEEEEEEecCCCccEEEEEEecCCcEEEE-E--cCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEe
Confidence 22222222 23556888889866664444 3 3899999988652 22 23445567778887 55
Q ss_pred cC--CCCe------EEEEEecCCCeEEE
Q 011916 387 SK--NVNE------LVSTHGYSQNQIMV 406 (475)
Q Consensus 387 s~--~~~~------l~~~~g~~dg~I~i 406 (475)
.| .+.. ++. ++.+|.|.+
T Consensus 236 ~~~~~~~~~~~~~~i~~--~T~~G~Ig~ 261 (321)
T PF03178_consen 236 IPRSGSSESPNRPQILY--GTVDGSIGV 261 (321)
T ss_dssp S--SSSS-TTEEEEEEE--EETTS-EEE
T ss_pred eecCCCCcccccceEEE--EecCCEEEE
Confidence 55 2222 444 667888773
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0013 Score=65.11 Aligned_cols=228 Identities=15% Similarity=0.201 Sum_probs=127.4
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCC----------------CcEEEEEEcCCCCEEEEEeCC-C
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPG----------------DSVCSVQWTREGSYISVGTNL-G 231 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~----------------~~V~~v~~spdg~~la~g~~d-g 231 (475)
.+....|||+ +.++...++.|++++..++...++..-+.. +.-..+-|||||++||....| .
T Consensus 44 ~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~ 123 (353)
T PF00930_consen 44 KLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDER 123 (353)
T ss_dssp TBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred ccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCc
Confidence 3455899997 788888999999999988876666542311 123568899999999986543 2
Q ss_pred e-----------------------------------EEEEECCCCeeeEE--e---cCCCCceEEEEe--CCCEEEEE--
Q 011916 232 Q-----------------------------------VQVWDGTQCKRVRT--F---GGHQTRAGVLAW--NSRILSSG-- 267 (475)
Q Consensus 232 ~-----------------------------------v~iwd~~~~~~~~~--~---~~h~~~v~~l~~--~~~~l~sg-- 267 (475)
. +.|+|+.+++.... . .....-+..+.| ++..|+..
T Consensus 124 ~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~ 203 (353)
T PF00930_consen 124 EVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWL 203 (353)
T ss_dssp TS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEE
T ss_pred CCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEc
Confidence 2 22334433332110 0 122334566677 33323332
Q ss_pred eCCC---cEEEEECCCCCccEEEecCccCC---EEEEEEc-CCCC-EEEEEeCCC--cEEEEECCCCceeEEEeccccce
Q 011916 268 SRDR---NILQHDLRVSSDYICKLAGHKSE---VCGLKWS-HDDR-ELASGGNDN--QLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 268 s~dg---~I~iwd~~~~~~~~~~~~~h~~~---V~~l~~s-~~~~-~lasg~~Dg--~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
.++. .+.++|.......+......... -..+.|. +++. +|.....|| .|++++...+. ...+....-.|
T Consensus 204 nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V 282 (353)
T PF00930_consen 204 NRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEV 282 (353)
T ss_dssp ETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-E
T ss_pred ccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceee
Confidence 3332 35556665322222211112222 2244554 5555 444555666 46666666665 34555556667
Q ss_pred eE-EEECCCCCcEEEEecCC--CCCeEEEEECCCCceeeeecCCCCe-eEEEEcCCCCeEEEEEe
Q 011916 338 KA-IAWSPHQSSLLASGGGT--ADRCIRFWNTSNGHQLNSVDTGSQV-CNLAWSKNVNELVSTHG 398 (475)
Q Consensus 338 ~~-l~~sp~~~~ll~sg~Gs--~d~~I~iwd~~~~~~~~~~~~~~~v-~~l~~s~~~~~l~~~~g 398 (475)
.. +.|.+++..++.++.+. ....|+..++..+..+..+...... ..+.|+|++++++..+.
T Consensus 283 ~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 283 TSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred cccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence 44 78899999888887631 2456777777734455555544444 49999999999998643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.01 Score=60.28 Aligned_cols=241 Identities=10% Similarity=0.059 Sum_probs=131.3
Q ss_pred EEEEEcCCCCEEEEEeC-CC----eEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCC-----------CcEE
Q 011916 213 CSVQWTREGSYISVGTN-LG----QVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRD-----------RNIL 274 (475)
Q Consensus 213 ~~v~~spdg~~la~g~~-dg----~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d-----------g~I~ 274 (475)
....++|+|++||.+-. .| .|+++|+++++.+...-. ......+.|. ++.|+....+ ..|.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 36788999999998633 33 599999999977653211 1112238893 4555444322 2377
Q ss_pred EEECCCCCcc-EEEecCccC-C-EEEEEEcCCCCEEEEEeC---C-CcEEEEECCCC----ceeEEEeccccce-eEEEE
Q 011916 275 QHDLRVSSDY-ICKLAGHKS-E-VCGLKWSHDDRELASGGN---D-NQLLVWNQHSQ----QPTLRLTEHTAAV-KAIAW 342 (475)
Q Consensus 275 iwd~~~~~~~-~~~~~~h~~-~-V~~l~~s~~~~~lasg~~---D-g~I~iwd~~~~----~~~~~~~~h~~~v-~~l~~ 342 (475)
.|.+.+.... ...+..... . ...+..++|+++|+.... + ..+++.|+..+ .....+......+ ..+..
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 8888654433 333433332 2 678899999998776432 2 45888888874 2233333333333 33433
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCCce---e-eeecCCCCeeEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEE
Q 011916 343 SPHQSSLLASGGGTADRCIRFWNTSNGHQ---L-NSVDTGSQVCNLAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVS 416 (475)
Q Consensus 343 sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~---~-~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~ 416 (475)
. .+..++.+..+...+.|...++.+... . ..+.+...+.-..+...+++|++. ...++ .|+++++..+....
T Consensus 286 ~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~-~~~~~~~~l~v~~~~~~~~~~ 363 (414)
T PF02897_consen 286 H-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLS-YRENGSSRLRVYDLDDGKESR 363 (414)
T ss_dssp E-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEE-EEETTEEEEEEEETT-TEEEE
T ss_pred c-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEE-EEECCccEEEEEECCCCcEEe
Confidence 3 445555555445668888888887763 2 223344433333444455566653 23333 68899998344444
Q ss_pred Eec-CCCcceEEEEECCCCCEEE-EE-eC--CCCEEEEecCCCCC
Q 011916 417 TLT-GHSLRVLYLATSPDGQTIV-TG-AG--DETLRFWNVFPSLK 456 (475)
Q Consensus 417 ~l~-~h~~~V~~l~~spdg~~l~-s~-s~--Dg~I~iW~~~~~~~ 456 (475)
.+. .-.+.|..+...+++..+. +. +. -+++.-||+.+++.
T Consensus 364 ~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 364 EIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred eecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 433 2344566666556555433 22 22 35677777776653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0002 Score=72.13 Aligned_cols=179 Identities=18% Similarity=0.142 Sum_probs=115.4
Q ss_pred cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe---CC-CcEEEEECCCCceeEEEeccccceeEEEECCCCC
Q 011916 272 NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG---ND-NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347 (475)
Q Consensus 272 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~---~D-g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~ 347 (475)
.+.+-|.. +.....+..-...+..-+|+|++..++... .. ..++++|+.+++...... ..+.-...+|+|||+
T Consensus 174 ~l~~~D~d--g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~ 250 (425)
T COG0823 174 ELALGDYD--GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS 250 (425)
T ss_pred eEEEEccC--CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence 34444443 334444555556677788999998766542 22 469999999887654443 344456679999999
Q ss_pred cEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEecCCCcce
Q 011916 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVSTLTGHSLRV 425 (475)
Q Consensus 348 ~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~V 425 (475)
.|+.+......-.|+++|+.++.........+.-+.-.|+|+|+.++.+ .+..| +|.+++.+.... ..++.....-
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~-Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~ 328 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFT-SDRGGRPQIYLYDLEGSQV-TRLTFSGGGN 328 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEE-eCCCCCcceEEECCCCCce-eEeeccCCCC
Confidence 9999887443445777888887754433333444578899999999986 34455 466666665544 3333333333
Q ss_pred EEEEECCCCCEEEEEeC-CCC--EEEEecCCCC
Q 011916 426 LYLATSPDGQTIVTGAG-DET--LRFWNVFPSL 455 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~-Dg~--I~iW~~~~~~ 455 (475)
..-.|+|||++|+..+. +|. |.+.++.++.
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 37789999999998764 344 5555554444
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00065 Score=65.04 Aligned_cols=234 Identities=12% Similarity=0.128 Sum_probs=136.9
Q ss_pred CCceeEEecCCC--C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCee
Q 011916 168 DFYLNLVDWSSQ--N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 168 d~~v~~l~ws~~--~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~~ 243 (475)
...+..+++||. . +..++.++.|.|.|+++..++..+.. ...+.+++|.-|. .+|..|..+|.|.|||+...+-
T Consensus 193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a--~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA--YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred chhhhhhccCccccceeeeeccCceEEEEecccceeeeheec--cCCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 345677899985 2 45556699999999999998888863 3889999998865 5778888899999999875422
Q ss_pred -eEEecC--CCCceEEEEe--------CCCEEEEEeCCCcEEEEECCCCCc-cEEEec-CccCCEEEEEEcCCCCE-EEE
Q 011916 244 -VRTFGG--HQTRAGVLAW--------NSRILSSGSRDRNILQHDLRVSSD-YICKLA-GHKSEVCGLKWSHDDRE-LAS 309 (475)
Q Consensus 244 -~~~~~~--h~~~v~~l~~--------~~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~-~h~~~V~~l~~s~~~~~-las 309 (475)
+..+.+ ...+|..++. .+.+|+....+ +..|.+..... ....+. +..+...++.+.+-.+. |++
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~~snh~l~t 348 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHGVSNHLLLT 348 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecCccceEEEE
Confidence 222221 2234444443 23444444432 44555543221 111111 12334445555553343 333
Q ss_pred EeCCC------cEE-EEECCCCceeEEEec-c-cc------ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 310 GGNDN------QLL-VWNQHSQQPTLRLTE-H-TA------AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 310 g~~Dg------~I~-iwd~~~~~~~~~~~~-h-~~------~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
.-.+- .|. --|...|.++...+. + .. .-.++.-.++..+++..|+ ..+.+.+||..+++.+..
T Consensus 349 yRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd--~tn~lil~D~~s~evvQ~ 426 (463)
T KOG1645|consen 349 YRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGD--STNELILQDPHSFEVVQT 426 (463)
T ss_pred ecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecC--CcceeEEeccchhheeee
Confidence 22210 011 112233333322211 1 00 1122333456666666654 889999999999999999
Q ss_pred ecCCCCeeEEEEcC-C-CCeEEEEEecCCCeEEEEECC
Q 011916 375 VDTGSQVCNLAWSK-N-VNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 375 ~~~~~~v~~l~~s~-~-~~~l~~~~g~~dg~I~iwd~~ 410 (475)
+....+|..++... + +.+|++ -.|..++||..+
T Consensus 427 l~~~epv~Dicp~~~n~~syLa~---LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 427 LALSEPVLDICPNDTNGSSYLAL---LTDDRVHIYKNE 461 (463)
T ss_pred cccCcceeecceeecCCcchhhh---eecceEEEEecC
Confidence 99888888877654 2 335554 357888888754
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.3e-06 Score=87.40 Aligned_cols=195 Identities=21% Similarity=0.355 Sum_probs=127.6
Q ss_pred CceEEEEeC----CCEEEEEeCCCcEEEEECCCCCcc-EEEecCccCCEEEEEEcC-CCCEEEEEe----CCCcEEEEEC
Q 011916 252 TRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDY-ICKLAGHKSEVCGLKWSH-DDRELASGG----NDNQLLVWNQ 321 (475)
Q Consensus 252 ~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~s~-~~~~lasg~----~Dg~I~iwd~ 321 (475)
..+.|+++. ..++++|..+|.|.+-.++..... .....+|....++++|++ |.+.||.|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 345666662 358899999999999988754333 345667888899999998 667888773 4678999999
Q ss_pred CCC--cee--EEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-ceeeeecCCCCeeEEEEcC-CCCeEE
Q 011916 322 HSQ--QPT--LRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-HQLNSVDTGSQVCNLAWSK-NVNELV 394 (475)
Q Consensus 322 ~~~--~~~--~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~~~~~~v~~l~~s~-~~~~l~ 394 (475)
.++ .+. ..|.. -......++|-.+.+ ++.+ |...+.+.++|++.. .....+. ...+..+...| .+++++
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvla--Gm~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLA--GMTSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcc-hhhc--ccccchhhhhhhhhhhhhhhhhh-hhhcccceecCCCCCcee
Confidence 876 221 12222 334456889997777 4544 448889999998732 2222222 12356677778 666766
Q ss_pred EEEecCCCeEEEEE-CCCCce-EEEecCC----CcceEEEEECCCCC-EEEEEeC-CCCEEEEecCC
Q 011916 395 STHGYSQNQIMVWK-YPSMAK-VSTLTGH----SLRVLYLATSPDGQ-TIVTGAG-DETLRFWNVFP 453 (475)
Q Consensus 395 ~~~g~~dg~I~iwd-~~~~~~-~~~l~~h----~~~V~~l~~spdg~-~l~s~s~-Dg~I~iW~~~~ 453 (475)
. +.+|.|.+|| ..+.+. +..+... ...+..++|.|... .+++... .++|+++++..
T Consensus 213 s---~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 213 S---NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred c---cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 5 4699999999 433322 2222211 23489999999532 4555555 47899999864
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.019 Score=60.01 Aligned_cols=277 Identities=12% Similarity=0.070 Sum_probs=157.6
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEE----------EEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCS----------VQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~----------v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.+++++.++.|+-.|..+|+..=..+......+.. +++ .+..+++++.+|.|.-.|.++++.+....
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~~ 147 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSKK 147 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence 455556667888888998888665544321111111 122 23567888899999999999999987765
Q ss_pred CC--CC--ceEE-EEeCCCEEEEEe------CCCcEEEEECCCCCccEEEecCc--------------------------
Q 011916 249 GH--QT--RAGV-LAWNSRILSSGS------RDRNILQHDLRVSSDYICKLAGH-------------------------- 291 (475)
Q Consensus 249 ~h--~~--~v~~-l~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h-------------------------- 291 (475)
.. .. .+.+ -...+..++.+. .+|.|..+|.++ ++.+-....-
T Consensus 148 ~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~T-G~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~ 226 (527)
T TIGR03075 148 NGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKT-GKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGD 226 (527)
T ss_pred cccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCC-CceeEeccCcCCCcccccccccccccccccCCCCCC
Confidence 21 11 1111 111233455543 268898888874 3332221110
Q ss_pred -----cCCE-EEEEEcCCCCEEEEEeC------------CC----cEEEEECCCCceeEEEeccccc---------eeEE
Q 011916 292 -----KSEV-CGLKWSHDDRELASGGN------------DN----QLLVWNQHSQQPTLRLTEHTAA---------VKAI 340 (475)
Q Consensus 292 -----~~~V-~~l~~s~~~~~lasg~~------------Dg----~I~iwd~~~~~~~~~~~~h~~~---------v~~l 340 (475)
...+ ..+.+.++..++..+.. |+ .|.-.|+++++....++..... ..-+
T Consensus 227 ~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~ 306 (527)
T TIGR03075 227 AWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILF 306 (527)
T ss_pred ccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEE
Confidence 0011 13355665556665541 11 6778899999987766542211 1222
Q ss_pred EECCCCC--cEEEEecCCCCCeEEEEECCCCceeeee------------c--CCCCe-----------------------
Q 011916 341 AWSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSV------------D--TGSQV----------------------- 381 (475)
Q Consensus 341 ~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~------------~--~~~~v----------------------- 381 (475)
....+|+ .+++.+. .+|.+++.|-.+|+.+... . ...++
T Consensus 307 d~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~ 384 (527)
T TIGR03075 307 DLKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFL 384 (527)
T ss_pred EeccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCc
Confidence 2334555 4565544 9999999999999886221 0 00000
Q ss_pred -----eEEEEcCCCCeEEEEEec-------------------------------CCCeEEEEECCCCceEEEecCCCcce
Q 011916 382 -----CNLAWSKNVNELVSTHGY-------------------------------SQNQIMVWKYPSMAKVSTLTGHSLRV 425 (475)
Q Consensus 382 -----~~l~~s~~~~~l~~~~g~-------------------------------~dg~I~iwd~~~~~~~~~l~~h~~~V 425 (475)
..++++|+...+++.... .-|.|.-+|+.+++.+-..+......
T Consensus 385 Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~ 464 (527)
T TIGR03075 385 GGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLW 464 (527)
T ss_pred CCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCC
Confidence 114566666655542211 12457778888887776655322111
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 426 LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
-.. ..-.+..++.++.||.++.+|..+++......
T Consensus 465 ~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 465 GGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred Ccc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 111 11245577778889999999999998776543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.013 Score=59.22 Aligned_cols=195 Identities=14% Similarity=0.117 Sum_probs=105.3
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------eeEEecCCCCceEEEEeCCC
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK------RVRTFGGHQTRAGVLAWNSR 262 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~ 262 (475)
.|.||+.....+.. +.... +.|.++.|+.+. .|++-..||.+++||+.... .+....-....+....+.+.
T Consensus 62 ~I~iys~sG~ll~~-i~w~~-~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~ 138 (410)
T PF04841_consen 62 SIQIYSSSGKLLSS-IPWDS-GRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKN 138 (410)
T ss_pred EEEEECCCCCEeEE-EEECC-CCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCC
Confidence 58888876665444 44444 899999999755 56667788999999986333 11111112222333232212
Q ss_pred EEEEEeCCCcEEEEECCCCCccEEEec---C-----ccCCE-E-EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec
Q 011916 263 ILSSGSRDRNILQHDLRVSSDYICKLA---G-----HKSEV-C-GLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 263 ~l~sgs~dg~I~iwd~~~~~~~~~~~~---~-----h~~~V-~-~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
=++.-..++.+.+..--........+. . |.... . -..++.+....+....++.+.+.+-...+. + .
T Consensus 139 GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i-~ 214 (410)
T PF04841_consen 139 GIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I-D 214 (410)
T ss_pred CEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c-c
Confidence 233333445544432211111111111 1 00000 0 022333444444444445555444322111 1 1
Q ss_pred cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--CCeeEEEEcCCCCeE
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVNEL 393 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~~~~l 393 (475)
..+++..|+.||++++++... .+|.+.+.+..-.+.+..++.+ .....+.|.-+...+
T Consensus 215 ~~~~i~~iavSpng~~iAl~t---~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~ 274 (410)
T PF04841_consen 215 SDGPIIKIAVSPNGKFIALFT---DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVV 274 (410)
T ss_pred CCCCeEEEEECCCCCEEEEEE---CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEE
Confidence 246899999999999776653 6899999987777777777655 677888887654333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0011 Score=69.38 Aligned_cols=203 Identities=13% Similarity=0.160 Sum_probs=128.1
Q ss_pred ceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCc-EEEEEEcCCCCEEEEEeCCC-----eEEEEECCCC--
Q 011916 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDS-VCSVQWTREGSYISVGTNLG-----QVQVWDGTQC-- 241 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~-V~~v~~spdg~~la~g~~dg-----~v~iwd~~~~-- 241 (475)
-+.|++-+...++.++.+|.|.+.+-.-... .-+. .+... |..+....+..+|++.+.|+ .|+||+++.-
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~~-~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~ 104 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQLI-RGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK 104 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccceee-ehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC
Confidence 3455554445677777799998887433221 2222 22233 55554444446777766654 4899998642
Q ss_pred ----eee---EEec----CCCCceEEEEeC--CCEEEEEeCCCcEEEEECC---CCCccEEEecCccCCEEEEEEcCCCC
Q 011916 242 ----KRV---RTFG----GHQTRAGVLAWN--SRILSSGSRDRNILQHDLR---VSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 242 ----~~~---~~~~----~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~---~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
.++ +.+. ....++.+++.+ -..+++|-.+|.|..+.-. ..+...........+|+++.+..++.
T Consensus 105 n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 105 NNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 233 2221 124466777774 4789999999999988432 12222333344567899999999888
Q ss_pred EEEEEeCCCcEEEEECCCCce-eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC
Q 011916 306 ELASGGNDNQLLVWNQHSQQP-TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG 378 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~ 378 (475)
.++.+..-..|.+|.+....+ ...+..|...+.|..+++....+++++ +..+.+|+.........+..+
T Consensus 185 s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~----~e~l~fY~sd~~~~cfaf~~g 254 (933)
T KOG2114|consen 185 SVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG----SEFLYFYDSDGRGPCFAFEVG 254 (933)
T ss_pred eeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec----CceEEEEcCCCcceeeeecCC
Confidence 733333346899999985543 344777888999999998766566653 688999998766555555433
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00049 Score=73.43 Aligned_cols=140 Identities=16% Similarity=0.187 Sum_probs=105.4
Q ss_pred CEEEEE-eCCCeEEEEECCCCeeeEEecCCCCc-eEEEEeC-------CCEEEEEeCCCcEEEEECCCCCccEEEec---
Q 011916 222 SYISVG-TNLGQVQVWDGTQCKRVRTFGGHQTR-AGVLAWN-------SRILSSGSRDRNILQHDLRVSSDYICKLA--- 289 (475)
Q Consensus 222 ~~la~g-~~dg~v~iwd~~~~~~~~~~~~h~~~-v~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--- 289 (475)
++|+.. .....|+-.|++.|+.+..+..|... |..++.+ +...+.|-.+..+..||.|..+..+....
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 444443 34578999999999999999977754 7777763 35667888899999999997653322211
Q ss_pred -CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 290 -GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 290 -~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.......|++-..+| +||+|+.+|.|++||--..+....+.+-..+|.+|..+.||+++++++ +..|.++++
T Consensus 574 Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi~t 646 (794)
T PF08553_consen 574 YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLIDT 646 (794)
T ss_pred cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEEEE
Confidence 234567788877776 999999999999999543333334556678999999999999999985 788888886
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0062 Score=55.38 Aligned_cols=143 Identities=10% Similarity=0.051 Sum_probs=95.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEE
Q 011916 221 GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLK 299 (475)
Q Consensus 221 g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 299 (475)
..++++|+..+.+.--|..+|+.+..-. -..++-+-+. -|++++.|+..|.+++.+..+ +.....+.....-=....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~t-Gs~~w~f~~~~~vk~~a~ 100 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKT-GSQIWNFVILETVKVRAQ 100 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEECCEEEEEEccCcEEEEEecc-hhheeeeeehhhhccceE
Confidence 4678889999999999999988776532 2233333322 578899999999999999984 434443332222112334
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECC-CCCcEEEEecCCCCCeEEEEECCCC
Q 011916 300 WSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP-HQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 300 ~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
..+++..+..|+.|+..+..|.++..++.+.+...+...+-+..| ++. |+++. ..|.+.--+..++
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~s-ly~a~---t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGS-LYAAI---TAGAVLAVTKNPY 167 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCce-EEEEe---ccceEEEEccCCC
Confidence 567899999999999999999999999988765555555556666 444 44432 3454444444443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0001 Score=75.15 Aligned_cols=131 Identities=15% Similarity=0.213 Sum_probs=92.1
Q ss_pred eEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---E--
Q 011916 254 AGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT---L-- 328 (475)
Q Consensus 254 v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~---~-- 328 (475)
.+|++-++.+++.|+.-|.+.+|+-...........+-.+.++.+..|++..++|.|+..|.|.++-+....+- +
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 35555567888888888888888776444444444445566788889999999999999999999988764321 1
Q ss_pred EE-eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-----ceeeeecCCCCeeEEEEc
Q 011916 329 RL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-----HQLNSVDTGSQVCNLAWS 387 (475)
Q Consensus 329 ~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-----~~~~~~~~~~~v~~l~~s 387 (475)
.. ..|...|++++|++++..++. |...|+|..-.+.+. .....+...+.|..+...
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ys---GD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYS---GDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred cccccCCceEEEEEecccccEEee---cCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 11 127889999999999997776 668899998887762 111222345666666554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00016 Score=72.74 Aligned_cols=91 Identities=15% Similarity=0.302 Sum_probs=70.4
Q ss_pred EEEEECCCCcEE--EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEE
Q 011916 190 VYLWTASNSKVT--RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILS 265 (475)
Q Consensus 190 V~lw~~~~~~~~--~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~ 265 (475)
-.+|+...+++. ....+.....|.+.+++|+.+.|+.|+.||+|.+||...+... +....-..+.++|+ |.+++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~ 315 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFV 315 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEE
Confidence 456666665443 3344467889999999999999999999999999998765332 33445667889995 67999
Q ss_pred EEeCCCcEEEEECCCCC
Q 011916 266 SGSRDRNILQHDLRVSS 282 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~ 282 (475)
+|+..|.+.+||+....
T Consensus 316 V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 316 VGSEQGELQCFDMALSP 332 (545)
T ss_pred EEcCCceEEEEEeecCc
Confidence 99999999999997443
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.026 Score=56.50 Aligned_cols=220 Identities=13% Similarity=0.101 Sum_probs=147.4
Q ss_pred CcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEeCCCEEEEEeC---CCcEEEEECCCCCcc
Q 011916 210 DSVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAWNSRILSSGSR---DRNILQHDLRVSSDY 284 (475)
Q Consensus 210 ~~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~l~sgs~---dg~I~iwd~~~~~~~ 284 (475)
..-..++.++.+..+. ....++.|.+.|..+.+...... +....-..+.+++..+..+.. ++++.+.|-.. ...
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t-~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT-NKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCC-CeE
Confidence 3445778888887544 44456899999988777776655 332233333345655555544 68888888773 444
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCceeE-E---EeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGG-NDNQLLVWNQHSQQPTL-R---LTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~-~Dg~I~iwd~~~~~~~~-~---~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
......-..+ ..+++.|+|+.++... .++.|.+.|........ . ...-......+.+.|++.++++...++.++
T Consensus 153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 4444333334 8999999999777665 67899999977655442 1 011223347899999999888876544457
Q ss_pred eEEEEECCCCceeeee-cCCC-CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc---ceEEEEECC
Q 011916 360 CIRFWNTSNGHQLNSV-DTGS-QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL---RVLYLATSP 432 (475)
Q Consensus 360 ~I~iwd~~~~~~~~~~-~~~~-~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~---~V~~l~~sp 432 (475)
.+...|..++...... .... ....+..+|+|+.+.+... ..+.+.+.|..+............ .+..+++.+
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred eEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec-CCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 9999999998877762 2222 6788999999999999633 468899999988877766554332 244455544
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0097 Score=60.10 Aligned_cols=193 Identities=12% Similarity=0.079 Sum_probs=101.7
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCC-----ccEEEecCccCCEEEEEEcCCCC
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSS-----DYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~-----~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
.|+||+. .|+.+..+.-..+.+.++.|. ...|++...||.++++|+.... ..+....-....+....+..+|-
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi 140 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI 140 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE
Confidence 4777774 355555554333899999995 5788889999999999996222 00111111112222333333552
Q ss_pred EEEEEeCCCcEEEEECCCCc-eeEEEecccccee---------E-EEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 306 ELASGGNDNQLLVWNQHSQQ-PTLRLTEHTAAVK---------A-IAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~-~~~~~~~h~~~v~---------~-l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
.++ ..++.+++..--... ....+..-..... . ..++.+....+... .++.+.+.+-... ..
T Consensus 141 vvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---~g~~i~~i~~~~~---~~ 212 (410)
T PF04841_consen 141 VVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---NGETIYIIDENSF---KQ 212 (410)
T ss_pred EEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---cCCEEEEEEcccc---cc
Confidence 333 334445444322211 1111111000000 0 22333333222221 3444553332221 11
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC-CcceEEEEECCCCC
Q 011916 375 VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH-SLRVLYLATSPDGQ 435 (475)
Q Consensus 375 ~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~ 435 (475)
+...+++..++.||+++.++.. ..+|.+.+....-.+.+.++... ......|.|.-+..
T Consensus 213 i~~~~~i~~iavSpng~~iAl~--t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 213 IDSDGPIIKIAVSPNGKFIALF--TDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred ccCCCCeEEEEECCCCCEEEEE--ECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 3345789999999999999984 46789988887666666666543 34567777766544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.023 Score=59.34 Aligned_cols=241 Identities=12% Similarity=0.125 Sum_probs=137.2
Q ss_pred CCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCC---CcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEe
Q 011916 177 SSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPG---DSVCSVQWTREGSYISVGTN------LGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 177 s~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~---~~V~~v~~spdg~~la~g~~------dg~v~iwd~~~~~~~~~~ 247 (475)
..+.++.++.++.|+-.|..+|+..-....... ..+++--.--++ .++++.. +|.|..+|.++++.+..+
T Consensus 119 ~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 119 YDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 345677778899999999999997655443211 112111111134 4555543 689999999999988765
Q ss_pred cCCCC-------------------------------ceE-EEEeCC--CEEEEEeCC-----C-----------cEEEEE
Q 011916 248 GGHQT-------------------------------RAG-VLAWNS--RILSSGSRD-----R-----------NILQHD 277 (475)
Q Consensus 248 ~~h~~-------------------------------~v~-~l~~~~--~~l~sgs~d-----g-----------~I~iwd 277 (475)
..-.. .+. .+++|+ .+++.+..+ + .|.-.|
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 42110 111 123342 455555422 2 455566
Q ss_pred CCCCCccEEEecC--cc-------CCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEE--------E----ecc
Q 011916 278 LRVSSDYICKLAG--HK-------SEVCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQPTLR--------L----TEH 333 (475)
Q Consensus 278 ~~~~~~~~~~~~~--h~-------~~V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~--------~----~~h 333 (475)
++ .++..-.++. |. ....-+.+..+|+ .++.+..+|.+++.|.++++++.. + ...
T Consensus 278 ~~-TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~ 356 (527)
T TIGR03075 278 PD-TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLK 356 (527)
T ss_pred cc-cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCC
Confidence 66 3333332222 21 1112223334665 788899999999999999987521 1 000
Q ss_pred cc-ce----------------------------eEEEECCCCCcEEEEecC-----------------------------
Q 011916 334 TA-AV----------------------------KAIAWSPHQSSLLASGGG----------------------------- 355 (475)
Q Consensus 334 ~~-~v----------------------------~~l~~sp~~~~ll~sg~G----------------------------- 355 (475)
.. ++ ..++++|+...+++-..-
T Consensus 357 ~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~ 436 (527)
T TIGR03075 357 TGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPP 436 (527)
T ss_pred CCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCC
Confidence 00 00 125566655533332110
Q ss_pred -CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC
Q 011916 356 -TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH 421 (475)
Q Consensus 356 -s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h 421 (475)
..-+.|.-+|+.+|+.+.......+...-.....+..+++ +..+|.++.+|..+++.+...+-.
T Consensus 437 ~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~--g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 437 DDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFY--GTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEE--ECCCCeEEEEECCCCCEeEEEeCC
Confidence 0125688899999988887765443222222234555555 778999999999999999887643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0019 Score=69.07 Aligned_cols=133 Identities=14% Similarity=0.105 Sum_probs=96.4
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCC--eeeEE-ec--CCCCceEE
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-----EGSYISVGTNLGQVQVWDGTQC--KRVRT-FG--GHQTRAGV 256 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-----dg~~la~g~~dg~v~iwd~~~~--~~~~~-~~--~h~~~v~~ 256 (475)
.+.|+-.|++.|+++..+.......|..++=.. +....++|-.+..+..||..-. +++.. .. .......|
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 578999999999999999876555565553211 2345677888889999997643 23321 11 23345667
Q ss_pred EEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 257 LAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 257 l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
++-. ..+||+|+.+|.|++||-- +......+.+-..+|.+|..+.||++++..+. ..|.+++.
T Consensus 583 ~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred EEecCCceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 7775 4799999999999999943 44445557777899999999999999887765 57777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.023 Score=52.86 Aligned_cols=196 Identities=13% Similarity=0.233 Sum_probs=112.3
Q ss_pred EecCCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCc-cCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 246 TFGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGH-KSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
.+.+-...+..++|++ .++++....+.|..++.. ++.+..+.-. .+..-+|++..++.++++.-.++.+.++++
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 4556666799999963 467777778888777764 5566555433 367889999888877777666899999988
Q ss_pred CCCc------eeEEEe-----ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC---Cceeeee-----c----CC
Q 011916 322 HSQQ------PTLRLT-----EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN---GHQLNSV-----D----TG 378 (475)
Q Consensus 322 ~~~~------~~~~~~-----~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~---~~~~~~~-----~----~~ 378 (475)
.... ....+. .+...+..++|.|.+..|+++- +..-..+|.+.. ...+... . .-
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k---E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK---ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE---ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--S
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe---CCCChhhEEEccccCccceeecccccccccccee
Confidence 4321 111221 2445689999999988788764 455555555543 2222211 1 23
Q ss_pred CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC---------cceEEEEECCCCCEEEEEeCCCCEEEE
Q 011916 379 SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS---------LRVLYLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
..+..+.++|....|++. +.....|..+| .+++.+..+.-.. ...-+|+|.++|.+.++ ++-...++|
T Consensus 171 ~d~S~l~~~p~t~~lliL-S~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLIL-SDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp S---EEEEETTTTEEEEE-ETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred ccccceEEcCCCCeEEEE-ECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 458889999988777776 66788999999 6676655443211 34688999999965554 465555444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.021 Score=54.24 Aligned_cols=221 Identities=14% Similarity=0.137 Sum_probs=122.5
Q ss_pred CCCCEEEEEeCCCeEEEEECC-CCeeeEEecCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEE--------
Q 011916 219 REGSYISVGTNLGQVQVWDGT-QCKRVRTFGGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICK-------- 287 (475)
Q Consensus 219 pdg~~la~g~~dg~v~iwd~~-~~~~~~~~~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~-------- 287 (475)
..++.|++|+.+| |.+++.. ..+..+... ...|..+..-+ +.|++-+ |+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 4678999999998 8999983 233333322 22388887743 4444443 599999998632221100
Q ss_pred -----ecCccCCEEEEE--EcCCC-CEEEEEeCCCcEEEEECCCC-----ceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 288 -----LAGHKSEVCGLK--WSHDD-RELASGGNDNQLLVWNQHSQ-----QPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 288 -----~~~h~~~V~~l~--~s~~~-~~lasg~~Dg~I~iwd~~~~-----~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
.......+..++ -...+ ..|+++- ...|.+|..... +....+. -...+..++|.. ..+++ |
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~--~~i~v-~- 154 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG--NKICV-G- 154 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC--CEEEE-E-
Confidence 111222344444 11233 3455444 458888887653 2334433 457789999983 32444 3
Q ss_pred CCCCCeEEEEECCCCceeeeecCC-------------CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE--Eec
Q 011916 355 GTADRCIRFWNTSNGHQLNSVDTG-------------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS--TLT 419 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~~~~-------------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~--~l~ 419 (475)
..+...+.|+.++......... .++..+... ++.+|++ + +..-.+.|. .|+... .++
T Consensus 155 --~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~---~-~~~g~fv~~-~G~~~r~~~i~ 226 (275)
T PF00780_consen 155 --TSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC---Y-DNIGVFVNK-NGEPSRKSTIQ 226 (275)
T ss_pred --eCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE---e-cceEEEEcC-CCCcCcccEEE
Confidence 3666889999977665444221 123333333 3444443 2 333333343 333222 333
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 420 GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 420 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
- ...+..+++ ...+|+..+.+ .|.||++.++...+.+.
T Consensus 227 W-~~~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 227 W-SSAPQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred c-CCchhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 2 224555666 44578877664 59999999998776654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.01 Score=59.28 Aligned_cols=183 Identities=11% Similarity=0.136 Sum_probs=103.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe--cC------CCCceEEEEe-------CC---CEEEEEeCC
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF--GG------HQTRAGVLAW-------NS---RILSSGSRD 270 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~--~~------h~~~v~~l~~-------~~---~~l~sgs~d 270 (475)
.+.|++++.| |=-++|+|..+|.+.|.|+.....+..- .. ....++++.| ++ -.|++|...
T Consensus 86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~ 164 (395)
T PF08596_consen 86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNS 164 (395)
T ss_dssp S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETT
T ss_pred CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCC
Confidence 5789999997 4458999999999999999877766542 12 2346778888 12 478899999
Q ss_pred CcEEEEECCCC--CccE----EEecCccCCEEEEE-EcCC-C-------------------CEEEEEeCCCcEEEEECCC
Q 011916 271 RNILQHDLRVS--SDYI----CKLAGHKSEVCGLK-WSHD-D-------------------RELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 271 g~I~iwd~~~~--~~~~----~~~~~h~~~V~~l~-~s~~-~-------------------~~lasg~~Dg~I~iwd~~~ 323 (475)
|.+.+|.+-.. +... .....+.+.|..|. ++.+ | ..++....+..++++...+
T Consensus 165 G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~ 244 (395)
T PF08596_consen 165 GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPK 244 (395)
T ss_dssp SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT-
T ss_pred CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCC
Confidence 99999988521 2111 12224556666655 3221 1 1233444467899999988
Q ss_pred CceeEEEeccccceeEEEEC-----CCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC-----CeeEEEEcCCCCeE
Q 011916 324 QQPTLRLTEHTAAVKAIAWS-----PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS-----QVCNLAWSKNVNEL 393 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~s-----p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~-----~v~~l~~s~~~~~l 393 (475)
.+..++..........+.+- ..+..|++.. .+|.|++|.+-.-+.+....... .+....++++|..+
T Consensus 245 ~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~---~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~ 321 (395)
T PF08596_consen 245 SKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF---NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIF 321 (395)
T ss_dssp --EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE---TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EE
T ss_pred CcccceeeccccccceEEEEeecccCCceEEEEEE---CCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEE
Confidence 87766555333334444453 2333344433 79999999999988888775432 24556678888866
Q ss_pred EE
Q 011916 394 VS 395 (475)
Q Consensus 394 ~~ 395 (475)
+.
T Consensus 322 ~~ 323 (395)
T PF08596_consen 322 YW 323 (395)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.022 Score=54.90 Aligned_cols=217 Identities=14% Similarity=0.133 Sum_probs=126.8
Q ss_pred ecCCC-C-EEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC--
Q 011916 175 DWSSQ-N-VLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG-- 249 (475)
Q Consensus 175 ~ws~~-~-~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~-- 249 (475)
.|.++ + ++-+. .++.|.-|+..+++..... ..+.+.++.....+..|+++.. -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 45554 3 33333 3789999999877654443 2344556655555555555443 366677666655333221
Q ss_pred --C-CCceEEEEe--CCCEEEEEeC---------CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C
Q 011916 250 --H-QTRAGVLAW--NSRILSSGSR---------DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N 314 (475)
Q Consensus 250 --h-~~~v~~l~~--~~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g 314 (475)
. ..+...+.. +|.+.++... -..-.+|-+...+..+..+..+-..-++|+||||++.|..+... +
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 1 122223333 3343333222 01114555543455566666666667899999999888777654 7
Q ss_pred cEEEEECCC--C----c-eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeeEEEE
Q 011916 315 QLLVWNQHS--Q----Q-PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVCNLAW 386 (475)
Q Consensus 315 ~I~iwd~~~--~----~-~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~~ 386 (475)
.|+.|++.. + + ....+....+..-.++...+|...++... ..+.|.+|+.. |+.+..+... ..+.+++|
T Consensus 186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~--~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW--GGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc--CCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 888887752 1 1 12222234566677888888874433321 22499999988 9999998776 77888888
Q ss_pred c-CCCCeEEEEEec
Q 011916 387 S-KNVNELVSTHGY 399 (475)
Q Consensus 387 s-~~~~~l~~~~g~ 399 (475)
- ++.+.|++++..
T Consensus 263 gG~~~~~L~iTs~~ 276 (307)
T COG3386 263 GGPDLNTLYITSAR 276 (307)
T ss_pred eCCCcCEEEEEecC
Confidence 5 456666665443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.028 Score=52.19 Aligned_cols=194 Identities=12% Similarity=0.122 Sum_probs=126.3
Q ss_pred CceeccCCCCCCCCceeEEecCC-CCEEEE-EcC--CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC
Q 011916 156 PHKVLDAPSLQDDFYLNLVDWSS-QNVLAV-GLG--TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG 231 (475)
Q Consensus 156 p~~~l~~p~~~~d~~v~~l~ws~-~~~la~-~~~--~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg 231 (475)
.++++..-.+....|...+.+.. +.++-+ |.- +.|+.+|+.+++......+...---..+... +++.....-.++
T Consensus 32 ~~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~ 110 (264)
T PF05096_consen 32 SYEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEG 110 (264)
T ss_dssp EEEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSS
T ss_pred eeEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCC
Confidence 34666665666778888899844 444333 332 4799999999999888877654433445544 334444555679
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCc-----cCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGH-----KSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~s~~~~~ 306 (475)
...+||..+.+.+.++.- .+.-+.++.++..|+.......|..+|.. .......+.-. -..+.-+.|- +|..
T Consensus 111 ~~f~yd~~tl~~~~~~~y-~~EGWGLt~dg~~Li~SDGS~~L~~~dP~-~f~~~~~i~V~~~g~pv~~LNELE~i-~G~I 187 (264)
T PF05096_consen 111 TGFVYDPNTLKKIGTFPY-PGEGWGLTSDGKRLIMSDGSSRLYFLDPE-TFKEVRTIQVTDNGRPVSNLNELEYI-NGKI 187 (264)
T ss_dssp EEEEEETTTTEEEEEEE--SSS--EEEECSSCEEEE-SSSEEEEE-TT-T-SEEEEEE-EETTEE---EEEEEEE-TTEE
T ss_pred eEEEEccccceEEEEEec-CCcceEEEcCCCEEEEECCccceEEECCc-ccceEEEEEEEECCEECCCcEeEEEE-cCEE
Confidence 999999999999998864 35667888888888888888899999986 33333333221 1245667775 6767
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEec------------c---ccceeEEEECCCCCcEEEEe
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLTE------------H---TAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~~------------h---~~~v~~l~~sp~~~~ll~sg 353 (475)
.|=.=....|...|..+|+.+..+.- + ..-.+.|||.|....++++|
T Consensus 188 yANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 188 YANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 77666777888999999987765531 1 24579999999999999987
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.033 Score=53.62 Aligned_cols=218 Identities=15% Similarity=0.078 Sum_probs=128.9
Q ss_pred EEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-C-CCEEEEEeCCCcEEEEECCCCCccEEEec-
Q 011916 214 SVQWTREGS-YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-N-SRILSSGSRDRNILQHDLRVSSDYICKLA- 289 (475)
Q Consensus 214 ~v~~spdg~-~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 289 (475)
+..|.++.. ++.+--..+.|.-|+..+++... +.. ...+.++.. + +..|+++.. .+.+++.+. +..+..+.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~-p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~-~~~~t~~~~ 103 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS-PGGFSSGALIDAGGRLIACEH--GVRLLDPDT-GGKITLLAE 103 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC-CCCcccceeecCCCeEEEEcc--ccEEEeccC-CceeEEecc
Confidence 345777665 45555567788888877654322 221 222233333 3 344444432 244455532 22211111
Q ss_pred ---C-ccCCEEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 290 ---G-HKSEVCGLKWSHDDRELASGGN-----------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 290 ---~-h~~~V~~l~~s~~~~~lasg~~-----------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
+ -....+.+...|+|.+.++... -|.|+.+|. .+..+..+..+-..-+.|+|+||++.++.+-+
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT 182 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT 182 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence 1 1133556778888876665433 133444444 45555556665666789999999998888754
Q ss_pred CCCCCeEEEEECCC--Cceee---ee---cCCCCeeEEEEcCCCCeEEEEEecCC-CeEEEEECCCCceEEEecCCCcce
Q 011916 355 GTADRCIRFWNTSN--GHQLN---SV---DTGSQVCNLAWSKNVNELVSTHGYSQ-NQIMVWKYPSMAKVSTLTGHSLRV 425 (475)
Q Consensus 355 Gs~d~~I~iwd~~~--~~~~~---~~---~~~~~v~~l~~s~~~~~l~~~~g~~d-g~I~iwd~~~~~~~~~l~~h~~~V 425 (475)
..+.|+-|++.. +..-. .+ ...+..-.++...+|.+.++ +..+ +.|.+|+.. ++++..+.-....+
T Consensus 183 --~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~--a~~~g~~v~~~~pd-G~l~~~i~lP~~~~ 257 (307)
T COG3386 183 --PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVA--AVWGGGRVVRFNPD-GKLLGEIKLPVKRP 257 (307)
T ss_pred --CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEe--cccCCceEEEECCC-CcEEEEEECCCCCC
Confidence 678888888752 21111 11 13355677888888888865 3344 489999987 99998888777788
Q ss_pred EEEEEC-CCCCEEEEEeC
Q 011916 426 LYLATS-PDGQTIVTGAG 442 (475)
Q Consensus 426 ~~l~~s-pdg~~l~s~s~ 442 (475)
++++|- ++.+.|+..+.
T Consensus 258 t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 258 TNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ccceEeCCCcCEEEEEec
Confidence 888885 44455554433
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.073 Score=53.97 Aligned_cols=257 Identities=16% Similarity=0.116 Sum_probs=139.6
Q ss_pred CceeccCCCCCCCC-c--eeEEecCCC-CEEEEEc--CC----eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE
Q 011916 156 PHKVLDAPSLQDDF-Y--LNLVDWSSQ-NVLAVGL--GT----CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS 225 (475)
Q Consensus 156 p~~~l~~p~~~~d~-~--v~~l~ws~~-~~la~~~--~~----~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la 225 (475)
.+.+||.-.+..+. + +..+.+||+ +.+|.+. +| .|++.|+.+++.+.-.- . ......+.|.++++.|+
T Consensus 108 ~evllD~n~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i-~-~~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 108 EEVLLDPNELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI-E-NPKFSSVSWSDDGKGFF 185 (414)
T ss_dssp -EEEEEGGGGSTTSS-EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE-E-EEESEEEEECTTSSEEE
T ss_pred eEEEEcchHhhccCceEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc-c-ccccceEEEeCCCCEEE
Confidence 46778877776665 4 335778886 6666654 34 59999999997654321 1 11122399999998877
Q ss_pred EEeCCC-----------eEEEEECCCCeee--EEecCCCCc--eEEEEe--CCCEEEEEe-CC---CcEEEEECCCC---
Q 011916 226 VGTNLG-----------QVQVWDGTQCKRV--RTFGGHQTR--AGVLAW--NSRILSSGS-RD---RNILQHDLRVS--- 281 (475)
Q Consensus 226 ~g~~dg-----------~v~iwd~~~~~~~--~~~~~h~~~--v~~l~~--~~~~l~sgs-~d---g~I~iwd~~~~--- 281 (475)
....+. .|..|.+.+.... ..+...... ...+.. ++++|+... .. ..+.+.|+...
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP 265 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC
Confidence 765433 3788888766432 444443333 344544 567665543 22 34777777642
Q ss_pred CccEEEecCccCCE-EEEEEcCCCCEEEEEe---CCCcEEEEECCCCce---eEEEeccccceeEEEECCCCCcEEEEec
Q 011916 282 SDYICKLAGHKSEV-CGLKWSHDDRELASGG---NDNQLLVWNQHSQQP---TLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 282 ~~~~~~~~~h~~~V-~~l~~s~~~~~lasg~---~Dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
......+......+ ..+... .+.+++... ..+.|...++..... ...+..+...+.-..+...+.+|++..-
T Consensus 266 ~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~ 344 (414)
T PF02897_consen 266 DAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR 344 (414)
T ss_dssp S-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE
T ss_pred cCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE
Confidence 22334443333333 334433 443444332 235777788887653 2244555553333333345566776653
Q ss_pred CCCCCeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEec--CCCeEEEEECCCCceE
Q 011916 355 GTADRCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGY--SQNQIMVWKYPSMAKV 415 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~--~dg~I~iwd~~~~~~~ 415 (475)
-.....|+++++..+.....+. ..+.|..+...++++.+.....+ .-+.++.||+.+++..
T Consensus 345 ~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 345 ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 1123568899998444444443 23445666666777766653222 2457888888887653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0088 Score=58.43 Aligned_cols=132 Identities=13% Similarity=0.130 Sum_probs=91.5
Q ss_pred CeEEEEECCCC-----cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEec-CCCCceEEEEeC
Q 011916 188 TCVYLWTASNS-----KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-RVRTFG-GHQTRAGVLAWN 260 (475)
Q Consensus 188 ~~V~lw~~~~~-----~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-~~~~~~-~h~~~v~~l~~~ 260 (475)
|.|+++++... ++..+......+.|++++-- +| +|+++.. +.|.+|++...+ ....-. .....+.++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAVG-NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEET-TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEeec-CEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 88999999884 44444444557889999866 44 4666555 789999998777 433322 234478888888
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccEEEe--cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 261 SRILSSGSRDRNILQHDLRVSSDYICKL--AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 261 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
+++++.|.....+.++.++.....+..+ ......++++.+-.+++.++.+..+|.|.++...
T Consensus 139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 8999999999999988665433322222 2234568888888666799999999999998876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0074 Score=48.00 Aligned_cols=101 Identities=23% Similarity=0.313 Sum_probs=70.7
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011916 295 VCGLKWSH---DD-RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370 (475)
Q Consensus 295 V~~l~~s~---~~-~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~ 370 (475)
|++|++.. || +.|++|+.|..|++|+-. +.+..+.. ...|..+.-...+++.++. .+|+|-+|+- ..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e-~~~v~~L~~~~~~~F~Y~l----~NGTVGvY~~--~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE-TDKVTSLCSLGGGRFAYAL----ANGTVGVYDR--SQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec-ccceEEEEEcCCCEEEEEe----cCCEEEEEeC--cc
Confidence 55666554 33 589999999999999855 45666654 5667788777776533332 7999999974 45
Q ss_pred eeeeecCCCCeeEEEEcCCCC----eEEEEEecCCCeEEE
Q 011916 371 QLNSVDTGSQVCNLAWSKNVN----ELVSTHGYSQNQIMV 406 (475)
Q Consensus 371 ~~~~~~~~~~v~~l~~s~~~~----~l~~~~g~~dg~I~i 406 (475)
.+..++...++.++++..-.. .|++ |.++|.|-+
T Consensus 73 RlWRiKSK~~~~~~~~~D~~gdG~~eLI~--GwsnGkve~ 110 (111)
T PF14783_consen 73 RLWRIKSKNQVTSMAFYDINGDGVPELIV--GWSNGKVEV 110 (111)
T ss_pred eeeeeccCCCeEEEEEEcCCCCCceEEEE--EecCCeEEe
Confidence 666666777788877765432 6777 888888753
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00032 Score=43.37 Aligned_cols=38 Identities=34% Similarity=0.654 Sum_probs=33.7
Q ss_pred ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 413 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
+.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45566778889999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0061 Score=64.12 Aligned_cols=151 Identities=13% Similarity=0.118 Sum_probs=92.8
Q ss_pred CCEEEEEEcCCCCEEEEEe------CCC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecC---------
Q 011916 293 SEVCGLKWSHDDRELASGG------NDN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGG--------- 355 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~------~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G--------- 355 (475)
..+...+++|+|+.+|..- .|. .|.+++... .. ..+... .....-.|+|+|..+.+...+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g-~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG-HSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC-CCCCCceECCCCCceEEEecCcceEEEecc
Confidence 4578899999999887765 243 566666532 22 333222 237889999998877665321
Q ss_pred CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEE---EECCCCce-E---EEec-CCCcceEE
Q 011916 356 TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMV---WKYPSMAK-V---STLT-GHSLRVLY 427 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i---wd~~~~~~-~---~~l~-~h~~~V~~ 427 (475)
...+.+.+.++..++... .....|..+.|+|||..++.+. +++|++ -....++. + ..+. +-...+..
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~---~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII---GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE---CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 012344444555444433 3456799999999999999864 477877 45444541 1 1122 23334688
Q ss_pred EEECCCCCEEEEEeCCCCEEEEecC
Q 011916 428 LATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 428 l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+.|..++.++ .+..++.-.+|.+.
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEe
Confidence 9999999855 55555544555543
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.013 Score=61.69 Aligned_cols=224 Identities=9% Similarity=0.062 Sum_probs=113.2
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeee--EEecCCCCceEEEEeC
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL------GQVQVWDGTQCKRV--RTFGGHQTRAGVLAWN 260 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d------g~v~iwd~~~~~~~--~~~~~h~~~v~~l~~~ 260 (475)
.+..||..+++...+..+.....-.+++. -++..+++|+.+ ..+..||..+..-. ..+............+
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~ 351 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID 351 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEEC
Confidence 57889998887766654432221122322 367777788753 34778888766432 2222222234455568
Q ss_pred CCEEEEEeCCC-----cEEEEECCCCCccEE--EecCccCCEEEEEEcCCCCEEEEEeCCC-------------------
Q 011916 261 SRILSSGSRDR-----NILQHDLRVSSDYIC--KLAGHKSEVCGLKWSHDDRELASGGNDN------------------- 314 (475)
Q Consensus 261 ~~~l~sgs~dg-----~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~~~~~lasg~~Dg------------------- 314 (475)
+.+.+.||.++ ++..||.... .... .+.........+.. +|...+.||.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~-~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDD-KWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCC-eEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 88888888764 4778888732 2111 11111111222222 677788887653
Q ss_pred ----cEEEEECCCCceeE--EEeccccceeEEEECCCCCcEEEEecCCC----CCeEEEEECCC-Cc--eeeeecCCCCe
Q 011916 315 ----QLLVWNQHSQQPTL--RLTEHTAAVKAIAWSPHQSSLLASGGGTA----DRCIRFWNTSN-GH--QLNSVDTGSQV 381 (475)
Q Consensus 315 ----~I~iwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~----d~~I~iwd~~~-~~--~~~~~~~~~~v 381 (475)
.+..||..+.+-.. .+.........+++ ++ .|++.||.+. ...+..||..+ .+ .+..+......
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~ 505 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KD-DIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA 505 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEE--CC-EEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc
Confidence 47778877654321 11111111112222 23 3777775211 13467899876 32 33333222222
Q ss_pred eEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEecCCC
Q 011916 382 CNLAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~ 422 (475)
..++.. ++ .|+++ |+.++ .+..||..+.+.......|.
T Consensus 506 ~~~~~~-~~-~iyv~-Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 506 LHTILH-DN-TIMML-HCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred ceeEEE-CC-EEEEE-eeecceeehhhcCcccccccchhhhcC
Confidence 222222 33 44444 55555 67777777665544333343
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00074 Score=68.29 Aligned_cols=93 Identities=20% Similarity=0.388 Sum_probs=78.1
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecccccee-EEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVK-AIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~-~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~ 370 (475)
...|.-+.|+|.-.++|.+..+|.|.+..+. .+.+.++.-|...++ +++|.|||+ +++.|- .||+|++.|+.++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGk-llaVg~--kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGK-LLAVGF--KDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCC-EEEEEe--cCCeEEEEEccCCC
Confidence 3468889999999999999999999999998 777888886776676 999999998 666654 99999999999999
Q ss_pred eeee--ecCCCCeeEEEEcC
Q 011916 371 QLNS--VDTGSQVCNLAWSK 388 (475)
Q Consensus 371 ~~~~--~~~~~~v~~l~~s~ 388 (475)
.+.. +.....|.++.|.+
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 8888 44566788888863
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.056 Score=48.66 Aligned_cols=204 Identities=12% Similarity=0.095 Sum_probs=119.4
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEE-ecCCCCceEEEEe--C--CCEEEE-EeCCCcEEEEECCCCCc-cEEEec----
Q 011916 221 GSYISVGTNLGQVQVWDGTQCKRVRT-FGGHQTRAGVLAW--N--SRILSS-GSRDRNILQHDLRVSSD-YICKLA---- 289 (475)
Q Consensus 221 g~~la~g~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~l~~--~--~~~l~s-gs~dg~I~iwd~~~~~~-~~~~~~---- 289 (475)
+.++.+--..|.|.-||.++.+..+. +++.. +..+.+ . +..+++ ++..-.|.-||-..... ...++.
T Consensus 27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~--~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~ 104 (310)
T KOG4499|consen 27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPP--SAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP 104 (310)
T ss_pred ceEEEEEeccCceehhhhhhhheEEEEEecCc--ceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence 45566666667777788876554432 33222 222222 2 233333 33333455566431111 111111
Q ss_pred -CccCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 290 -GHKSEVCGLKWSHDDRELASGGND---------NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 290 -~h~~~V~~l~~s~~~~~lasg~~D---------g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
..+.....-..+|+|++++-.-.| |.++.|-... .+..+...-.--+.++|+.+.+.++..-+ .+-
T Consensus 105 d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h--~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs--ln~ 180 (310)
T KOG4499|consen 105 DRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH--QVELIWNCVGISNGLAWDSDAKKFYYIDS--LNY 180 (310)
T ss_pred hHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCC--CceeeehhccCCccccccccCcEEEEEcc--Cce
Confidence 013345566778999884432222 3444444332 22222233344478999999998888754 788
Q ss_pred eEEEEE--CCCCcee-----eeecC----C-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEE
Q 011916 360 CIRFWN--TSNGHQL-----NSVDT----G-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLY 427 (475)
Q Consensus 360 ~I~iwd--~~~~~~~-----~~~~~----~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 427 (475)
.|.-|| ..+|... ..+.. . -..-.+++..+|+..++ ....++|..+|..+++.+.+++-.+..|++
T Consensus 181 ~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va--~~ng~~V~~~dp~tGK~L~eiklPt~qits 258 (310)
T KOG4499|consen 181 EVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVA--TFNGGTVQKVDPTTGKILLEIKLPTPQITS 258 (310)
T ss_pred EEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEE--EecCcEEEEECCCCCcEEEEEEcCCCceEE
Confidence 887787 6666432 22221 1 12344566778888777 678899999999999999999988999999
Q ss_pred EEECC
Q 011916 428 LATSP 432 (475)
Q Consensus 428 l~~sp 432 (475)
++|--
T Consensus 259 ccFgG 263 (310)
T KOG4499|consen 259 CCFGG 263 (310)
T ss_pred EEecC
Confidence 99964
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00091 Score=67.67 Aligned_cols=92 Identities=17% Similarity=0.337 Sum_probs=76.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceE-EEEe--CCCEEEEEeCCCcEEEEECCCCCccE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAG-VLAW--NSRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~-~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
...|.-+.|+|.-.++|+++.+|.|.+..+. .+.+.++..|...++ +++| +|+.|++|-.||+|++.|+..+....
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3467789999999999999999999999988 888888887877777 9999 58999999999999999999655544
Q ss_pred EEecCccCCEEEEEEc
Q 011916 286 CKLAGHKSEVCGLKWS 301 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s 301 (475)
.....-...|.++.|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 4334445667777776
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.011 Score=46.97 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=67.0
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 212 VCSVQWTR---EG-SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 212 V~~v~~sp---dg-~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
|+++++.. || +.|++|+.|..|+||+- .+.+.++. ....|++|+- .+..++.+..+|+|-+|+-. ..+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~---~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRS---QRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCc---ceee
Confidence 56666654 33 68999999999999984 35566665 3456666665 56899999999999999864 2222
Q ss_pred EecCccCCEEEEEEcC---CC-CEEEEEeCCCcEE
Q 011916 287 KLAGHKSEVCGLKWSH---DD-RELASGGNDNQLL 317 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~---~~-~~lasg~~Dg~I~ 317 (475)
..+. +..+.++.+.. || ..|++|-.+|.|-
T Consensus 76 RiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 76 RIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2222 23366666544 22 2788888888764
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.046 Score=57.64 Aligned_cols=203 Identities=17% Similarity=0.163 Sum_probs=108.3
Q ss_pred CCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEe------CCC--cEEEEECCCCCccEEEecCccCCEEEEE
Q 011916 230 LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGS------RDR--NILQHDLRVSSDYICKLAGHKSEVCGLK 299 (475)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs------~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 299 (475)
+|.+.-.+-.....+.-..+....+...+. +++.++... .|. .|.+++. .+.......+. ....-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~g~--~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLEGH--SLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeecCC--CCCCce
Confidence 666655442222222222122223444444 566665544 243 4555554 23332223332 378889
Q ss_pred EcCCCCEEEEEeCC------------CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE---E
Q 011916 300 WSHDDRELASGGND------------NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF---W 364 (475)
Q Consensus 300 ~s~~~~~lasg~~D------------g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i---w 364 (475)
|+|||..|++.... +.+.+.++..++... .....|..+.|+|||..+++.. ++.|++ -
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vv 476 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII----GGKVYLAVVE 476 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEE
Confidence 99998888776532 233333444333322 2356799999999999998875 467777 4
Q ss_pred ECCCCce-e---eee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCE
Q 011916 365 NTSNGHQ-L---NSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQT 436 (475)
Q Consensus 365 d~~~~~~-~---~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~ 436 (475)
....|.. + ..+ .....+..+.|..++..++.. ...+..+...++..... ..+.. ....+..++-+++ .
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~-~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~ 552 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGR-SDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--T 552 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEEEEEe-cCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--e
Confidence 4445541 1 112 123346889999999965432 22333444444442221 12232 3566777877763 4
Q ss_pred EEEEeCCCCEE
Q 011916 437 IVTGAGDETLR 447 (475)
Q Consensus 437 l~s~s~Dg~I~ 447 (475)
|+....++.+.
T Consensus 553 iyv~~~~g~~~ 563 (591)
T PRK13616 553 VYVTDARAVLQ 563 (591)
T ss_pred EEEEcCCceEE
Confidence 55556666443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.049 Score=58.37 Aligned_cols=210 Identities=12% Similarity=0.128 Sum_probs=135.1
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEE---EEEEcCC-CCEEEEEeC----------CCeEEEEECCCCeeeEEecCC--CC
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVC---SVQWTRE-GSYISVGTN----------LGQVQVWDGTQCKRVRTFGGH--QT 252 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~---~v~~spd-g~~la~g~~----------dg~v~iwd~~~~~~~~~~~~h--~~ 252 (475)
.+.++|..+-++....++...+.+. ++.|..| +.++++|+. .|.|.|+.+...+.++....+ .+
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G 830 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG 830 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence 5888888888887777665555444 4458887 789999874 488889888775444444322 34
Q ss_pred ceEEEE-eCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC--CCceeEE
Q 011916 253 RAGVLA-WNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH--SQQPTLR 329 (475)
Q Consensus 253 ~v~~l~-~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~--~~~~~~~ 329 (475)
.+.++. |+|++||.- +..|++|++. ..+.++.-..|...+..+...-.|..+++|..-+.+.+.-.+ .+.....
T Consensus 831 av~aL~~fngkllA~I--n~~vrLye~t-~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev 907 (1096)
T KOG1897|consen 831 AVYALVEFNGKLLAGI--NQSVRLYEWT-TERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV 907 (1096)
T ss_pred ceeehhhhCCeEEEec--CcEEEEEEcc-ccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe
Confidence 555554 477777654 4689999997 444555566677889999998899999999988877665544 3333322
Q ss_pred Ee-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-------------------CceeeeecCCCCeeE--EEEc
Q 011916 330 LT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-------------------GHQLNSVDTGSQVCN--LAWS 387 (475)
Q Consensus 330 ~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-------------------~~~~~~~~~~~~v~~--l~~s 387 (475)
-+ .+....+++.+-.+..++.+. .+|.+.+....+ |+.+..+.++.-|.. -..+
T Consensus 908 ArD~~p~Wmtaveil~~d~ylgae----~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~~~~s~~ 983 (1096)
T KOG1897|consen 908 ARDYNPNWMTAVEILDDDTYLGAE----NSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQLGDSMI 983 (1096)
T ss_pred ehhhCccceeeEEEecCceEEeec----ccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEeecccccc
Confidence 22 366778888887777655443 567776665432 223333334443443 1234
Q ss_pred CCCCeEEEEEecCCCeEEEE
Q 011916 388 KNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg~I~iw 407 (475)
|-+..++. |..+|.|-+.
T Consensus 984 ~~~~~vlf--gTv~GsIG~i 1001 (1096)
T KOG1897|consen 984 PLEPKVLF--GTVNGSIGII 1001 (1096)
T ss_pred CCCCcEEE--EEccceEEEE
Confidence 45555666 6677877554
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0048 Score=61.39 Aligned_cols=142 Identities=13% Similarity=0.168 Sum_probs=99.1
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC---------CCEEEEEeCCCcEEEEECCCCCc-cEEEe
Q 011916 220 EGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN---------SRILSSGSRDRNILQHDLRVSSD-YICKL 288 (475)
Q Consensus 220 dg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~---------~~~l~sgs~dg~I~iwd~~~~~~-~~~~~ 288 (475)
+.++|+ .+.....|+-.|++.|+.+.++..|.. |.-+.+. ...-+.|-.|..|.-||.|..+. .+...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 334443 445556688889999999999987776 4444442 22345677788999999996665 22222
Q ss_pred cCcc----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 289 AGHK----SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 289 ~~h~----~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
.+|. ....|++-..+| ++|+|+.+|.|++||--.......+.+...+|..|..+.+|+++++++ +..+.+-
T Consensus 423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc----~tyLlLi 497 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC----KTYLLLI 497 (644)
T ss_pred eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec----ccEEEEE
Confidence 2322 234555554455 999999999999999743333445667888999999999999999985 7777777
Q ss_pred ECC
Q 011916 365 NTS 367 (475)
Q Consensus 365 d~~ 367 (475)
++.
T Consensus 498 ~t~ 500 (644)
T KOG2395|consen 498 DTL 500 (644)
T ss_pred EEe
Confidence 753
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.25 Score=49.48 Aligned_cols=84 Identities=12% Similarity=0.103 Sum_probs=55.6
Q ss_pred cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC--CeeEEEEc----------------CCCCeEE
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS--QVCNLAWS----------------KNVNELV 394 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~--~v~~l~~s----------------~~~~~l~ 394 (475)
....+.+|+.+|++. ++++.. .=|.|.++|+.++..++..+.-. ++.=+... +....++
T Consensus 306 ~~R~~~~i~~sP~~~-laA~tD--slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 306 SKREGESICLSPSGR-LAAVTD--SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred CCceEEEEEECCCCC-EEEEEc--CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 345578899999987 555543 67999999999988777664211 11111111 1112455
Q ss_pred EEEecCCCeEEEEECCCCceEEEec
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
+.+.-.-|.|.||.++++..+..+.
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEE
Confidence 5567778999999999888877665
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.026 Score=59.38 Aligned_cols=216 Identities=13% Similarity=0.137 Sum_probs=120.6
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-C-----eEEEEECCCCeeeE--EecCCCCceEEEEe
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-G-----QVQVWDGTQCKRVR--TFGGHQTRAGVLAW 259 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-g-----~v~iwd~~~~~~~~--~~~~h~~~v~~l~~ 259 (475)
..|..+|..++.......+.......+++.. +|...++|+.| | ++..||..+.+-.. .+............
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l 379 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL 379 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE
Confidence 4688999999987777766555555555554 56788889888 3 47788877665332 33334445555666
Q ss_pred CCCEEEEEeCCCc-----EEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCcee
Q 011916 260 NSRILSSGSRDRN-----ILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGNDN------QLLVWNQHSQQPT 327 (475)
Q Consensus 260 ~~~~l~sgs~dg~-----I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg------~I~iwd~~~~~~~ 327 (475)
+|.+.++|+.||. +-.||.+...- .+..+...........+ +|...++||.++ ++..||..+.+-.
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence 8999999999974 66777763321 11112111112222222 688888888654 5678888766432
Q ss_pred E--EEeccccceeEEEECCCCCcEEEEecCCCCC-----eEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 328 L--RLTEHTAAVKAIAWSPHQSSLLASGGGTADR-----CIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 328 ~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~-----~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
. .+..-..... ++.- +..|++.|| .|+ +|..||..+.+-...-..............+..++++ |+.
T Consensus 458 ~~~~M~~~R~~~g-~a~~--~~~iYvvGG--~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~v-GG~ 531 (571)
T KOG4441|consen 458 LIAPMNTRRSGFG-VAVL--NGKIYVVGG--FDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAV-GGF 531 (571)
T ss_pred ecCCcccccccce-EEEE--CCEEEEECC--ccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEE-ecc
Confidence 2 1111111111 2222 334888875 443 3777887765544332222233333333344555554 444
Q ss_pred CC-----eEEEEECCCC
Q 011916 401 QN-----QIMVWKYPSM 412 (475)
Q Consensus 401 dg-----~I~iwd~~~~ 412 (475)
+| .|..||..+.
T Consensus 532 ~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 532 DGNNNLNTVECYDPETD 548 (571)
T ss_pred cCccccceeEEcCCCCC
Confidence 43 3555555443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0011 Score=40.87 Aligned_cols=37 Identities=30% Similarity=0.597 Sum_probs=32.6
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4455667888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.21 Score=46.67 Aligned_cols=159 Identities=16% Similarity=0.194 Sum_probs=107.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCC-CCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH-QTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSD 283 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~ 283 (475)
+....|.++.|+|+.+.|++..+...-.|+=...|+.++++.-. -...-.+.| ++.+.++--+++.+.++.+.....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 44556999999999999999888888888888889999987621 122334555 455666666788888887764432
Q ss_pred cEE------Eec--Cc-cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEEecc-------ccceeEEEECC
Q 011916 284 YIC------KLA--GH-KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP---TLRLTEH-------TAAVKAIAWSP 344 (475)
Q Consensus 284 ~~~------~~~--~h-~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h-------~~~v~~l~~sp 344 (475)
.+. .+. .+ +....+++|.+..+.|..+-+-+-+.||....... +.....+ -..|.++.|.+
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 211 111 12 55678999999999999988888788777653321 1111111 23467788887
Q ss_pred CCCcEEEEecCCCCCeEEEEECC
Q 011916 345 HQSSLLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 345 ~~~~ll~sg~Gs~d~~I~iwd~~ 367 (475)
....|++-+. +++.+.-.|..
T Consensus 243 ~~~~LLVLS~--ESr~l~Evd~~ 263 (316)
T COG3204 243 ITNSLLVLSD--ESRRLLEVDLS 263 (316)
T ss_pred CCCcEEEEec--CCceEEEEecC
Confidence 7777777764 77877777754
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.015 Score=58.08 Aligned_cols=132 Identities=17% Similarity=0.126 Sum_probs=95.6
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCC-------EEEEEeCCCeEEEEECCCC-e-eeEEecCCC----Cc
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGS-------YISVGTNLGQVQVWDGTQC-K-RVRTFGGHQ----TR 253 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~-------~la~g~~dg~v~iwd~~~~-~-~~~~~~~h~----~~ 253 (475)
...|+-.|++.|+++..+.++ ..|.-+.+.|+.+ .-++|-.+..|.-||..-. + .+...++|. ..
T Consensus 355 ~~~l~klDIE~GKIVeEWk~~--~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~n 432 (644)
T KOG2395|consen 355 QDKLYKLDIERGKIVEEWKFE--DDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNN 432 (644)
T ss_pred cCcceeeecccceeeeEeecc--CCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccc
Confidence 567999999999999999754 3377778888653 2456777888999997532 2 222223332 23
Q ss_pred eEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 254 AGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 254 v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
..|++- ...++++|+.+|.|++||- ........+.+...+|..+..+.+|++|+..+. ..+.+.++.
T Consensus 433 Fsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t~ 500 (644)
T KOG2395|consen 433 FSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDTL 500 (644)
T ss_pred cceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEEe
Confidence 445554 3579999999999999997 355555668888999999999999998877664 677777654
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0062 Score=65.72 Aligned_cols=144 Identities=13% Similarity=0.144 Sum_probs=94.3
Q ss_pred CCcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeE-----Eec------CCCCceEEEEeCC---CEEEEEeCCCc
Q 011916 209 GDSVCSVQWTREGSYISVGTN--LGQVQVWDGTQCKRVR-----TFG------GHQTRAGVLAWNS---RILSSGSRDRN 272 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~--dg~v~iwd~~~~~~~~-----~~~------~h~~~v~~l~~~~---~~l~sgs~dg~ 272 (475)
.-.+..+...+|+...++... +-.|..||+++..... -+. ....-..++.|++ ...+....|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 345556666677766555433 3368899987532211 111 2233456788875 56777889999
Q ss_pred EEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec----cccceeEEEECCCCCc
Q 011916 273 ILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE----HTAAVKAIAWSPHQSS 348 (475)
Q Consensus 273 I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~ 348 (475)
|.+..+......+..+ .....+++++|+|.|++++.|-+.|++.-|...-. ....+.+ ....|.+|.|-....+
T Consensus 180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~ef 257 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEF 257 (1405)
T ss_pred hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeE
Confidence 9998876443333332 34566899999999999999999999988875432 1112111 2478999999988887
Q ss_pred EEEEec
Q 011916 349 LLASGG 354 (475)
Q Consensus 349 ll~sg~ 354 (475)
+++-+.
T Consensus 258 lvvy~n 263 (1405)
T KOG3630|consen 258 LVVYGN 263 (1405)
T ss_pred EEEecc
Confidence 766554
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.33 Score=47.63 Aligned_cols=230 Identities=16% Similarity=0.212 Sum_probs=119.1
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee---eEEe----cCCCCceEEEEeCC-----CEEEEEeCC--------
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR---VRTF----GGHQTRAGVLAWNS-----RILSSGSRD-------- 270 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~---~~~~----~~h~~~v~~l~~~~-----~~l~sgs~d-------- 270 (475)
..++|+|.|||++|++ ...|.|.+++ ..+.. +..+ .........+++++ .+|......
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 4578999999986654 5689999999 44443 2222 13445678888865 344443331
Q ss_pred -CcEEEEECCCCC------c-cEEEecC---ccCCEEEEEEcCCCCEEEEEeCCC-------------cEEEEECCCC--
Q 011916 271 -RNILQHDLRVSS------D-YICKLAG---HKSEVCGLKWSHDDRELASGGNDN-------------QLLVWNQHSQ-- 324 (475)
Q Consensus 271 -g~I~iwd~~~~~------~-~~~~~~~---h~~~V~~l~~s~~~~~lasg~~Dg-------------~I~iwd~~~~-- 324 (475)
..|.-|.+.... + .+..+.. ....-..|.|.|||.+.++.+..+ .|.-.+....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 133334433220 1 1112222 234467799999997766655432 2333332211
Q ss_pred -----------ceeEEEeccccceeEEEECCC-CCcEEEEecCCCCCeEEEEECCCCc----------------------
Q 011916 325 -----------QPTLRLTEHTAAVKAIAWSPH-QSSLLASGGGTADRCIRFWNTSNGH---------------------- 370 (475)
Q Consensus 325 -----------~~~~~~~~h~~~v~~l~~sp~-~~~ll~sg~Gs~d~~I~iwd~~~~~---------------------- 370 (475)
....--.++.. ...++|+|. |. |+++-.| .+..=.|--+..|.
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN-~~~~~~d~~tg~-l~~~d~G-~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRN-PFGLAFDPNTGR-LWAADNG-PDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SE-EEEEEEETTTTE-EEEEEE--SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCCccccCCCceEEEEEeCCCc-cccEEEECCCCc-EEEEccC-CCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00001112222 368999998 55 5554322 22222222222211
Q ss_pred -------eeeeecCCCCeeEEEEcCC-------CCeEEEEEecCCCeEEEEECCCCceEE---E-ecCCCcceEEEEECC
Q 011916 371 -------QLNSVDTGSQVCNLAWSKN-------VNELVSTHGYSQNQIMVWKYPSMAKVS---T-LTGHSLRVLYLATSP 432 (475)
Q Consensus 371 -------~~~~~~~~~~v~~l~~s~~-------~~~l~~~~g~~dg~I~iwd~~~~~~~~---~-l~~h~~~V~~l~~sp 432 (475)
++..+..+..+..+.|... +.++++ ....+.|...++.....+. . +.....++..+++.|
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p 315 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVA--DYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP 315 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEe--cCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC
Confidence 2222334456777777643 345555 5567788888886553322 2 233555899999999
Q ss_pred CCCEEEEEeCCCCEE
Q 011916 433 DGQTIVTGAGDETLR 447 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~ 447 (475)
||.++++...+|.|+
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 999999888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.26 Score=45.84 Aligned_cols=234 Identities=15% Similarity=0.173 Sum_probs=144.3
Q ss_pred EEEEEEcCC-CCEEEEEeCCCe-EEEEECCCCeeeEEecCCCCc----eEEEEeCCCEEEEEeCC-----CcEEEEECCC
Q 011916 212 VCSVQWTRE-GSYISVGTNLGQ-VQVWDGTQCKRVRTFGGHQTR----AGVLAWNSRILSSGSRD-----RNILQHDLRV 280 (475)
Q Consensus 212 V~~v~~spd-g~~la~g~~dg~-v~iwd~~~~~~~~~~~~h~~~----v~~l~~~~~~l~sgs~d-----g~I~iwd~~~ 280 (475)
-..|.|+|. ..-++.+-.-|+ ..++|....+...++...+++ -.+++-+|.+|...-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 346888884 456777777776 478898887776665433322 12344467888776543 7899999996
Q ss_pred CCccEEEecCccCCEEEEEEcCCCCEEEEEeC------C------------CcEEEEECCCCceeEE--Ee--cccccee
Q 011916 281 SSDYICKLAGHKSEVCGLKWSHDDRELASGGN------D------------NQLLVWNQHSQQPTLR--LT--EHTAAVK 338 (475)
Q Consensus 281 ~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~------D------------g~I~iwd~~~~~~~~~--~~--~h~~~v~ 338 (475)
....+..+..|.-.-..+.|.+||+.|+.+.. | -.+.+.|..++..+.+ +. .+...|.
T Consensus 150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhccee
Confidence 66777778888888889999999999988753 1 1233444444444332 22 2456688
Q ss_pred EEEECCCCCcEEEEec-CC-CCCeEEEEECCCCceeeeecC--------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 339 AIAWSPHQSSLLASGG-GT-ADRCIRFWNTSNGHQLNSVDT--------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~-Gs-~d~~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
.++..++|..++.+-- |. .|.---+=-...++.+.-++. ...|-+++.+.+...++.+ .-..+...+||
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lT-SP~GN~~vi~d 308 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALT-SPRGNRAVIWD 308 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEe-cCCCCeEEEEE
Confidence 8888888874444321 00 111111222234444444432 2457778888776666664 55677889999
Q ss_pred CCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 409 YPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 409 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
..++..+..-.-- .+..++- ...-++..+.+|.+.++.
T Consensus 309 a~tG~vv~~a~l~--daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 309 AATGAVVSEAALP--DAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred cCCCcEEeccccc--cccccee--ccCceEEecCCceEEecc
Confidence 9999877544321 1222332 333456667788888873
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.015 Score=62.62 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=70.8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW- 259 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~- 259 (475)
+++++..|.|.+.|..+.-..........++|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..|..+.+.+-+
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence 5566667788877765541111111134689999999999999999999999999999999999998877776665544
Q ss_pred ---C-CCEEEEEeCCCcEEEEECC
Q 011916 260 ---N-SRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 260 ---~-~~~l~sgs~dg~I~iwd~~ 279 (475)
+ +..++++...|. +|.+.
T Consensus 182 ~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred EEeCCCcEEEEccCCCc--eEEEE
Confidence 2 356788877776 45443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.035 Score=58.50 Aligned_cols=174 Identities=11% Similarity=0.065 Sum_probs=92.5
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeE--EecCCCCceEEEEeCC
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG-----QVQVWDGTQCKRVR--TFGGHQTRAGVLAWNS 261 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg-----~v~iwd~~~~~~~~--~~~~h~~~v~~l~~~~ 261 (475)
.|..||..+........+.....-.+++ .-+|+..++|+.+| .+..||..+.+-.. .+.........+..++
T Consensus 321 ~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g 399 (557)
T PHA02713 321 KVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQ 399 (557)
T ss_pred eEEEEECCCCeEeeCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECC
Confidence 5888898887765544332221111222 23678888888764 48889987654322 2332223334455688
Q ss_pred CEEEEEeCCC-----------------------cEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCC----
Q 011916 262 RILSSGSRDR-----------------------NILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGND---- 313 (475)
Q Consensus 262 ~~l~sgs~dg-----------------------~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~D---- 313 (475)
.+.+.|+.++ .+..||.....- .+..+.........+. -+++..+.||.+
T Consensus 400 ~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~ 477 (557)
T PHA02713 400 YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVS--HKDDIYVVCDIKDEKN 477 (557)
T ss_pred EEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEE--ECCEEEEEeCCCCCCc
Confidence 8888888653 466777763221 1111111111111222 256777777754
Q ss_pred --CcEEEEECCC-Cc--eeEEEeccccceeEEEECCCCCcEEEEecCCCCC--eEEEEECCCCc
Q 011916 314 --NQLLVWNQHS-QQ--PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR--CIRFWNTSNGH 370 (475)
Q Consensus 314 --g~I~iwd~~~-~~--~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd~~~~~ 370 (475)
..+..||..+ .+ .+..+.........+++ +..|++.|| .++ .+..||..+.+
T Consensus 478 ~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg--~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 478 VKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHC--YESYMLQDTFNVYTYE 536 (557)
T ss_pred cceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEee--ecceeehhhcCccccc
Confidence 2467899886 33 22333322222333333 334888876 666 56667766543
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.06 Score=56.71 Aligned_cols=227 Identities=15% Similarity=0.151 Sum_probs=119.2
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCeeeE--EecCCCCceEEEEeCCCEEEEEeCC-C-----cEEEEECCCCCcc
Q 011916 219 REGSYISVGTNLG------QVQVWDGTQCKRVR--TFGGHQTRAGVLAWNSRILSSGSRD-R-----NILQHDLRVSSDY 284 (475)
Q Consensus 219 pdg~~la~g~~dg------~v~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l~sgs~d-g-----~I~iwd~~~~~~~ 284 (475)
..+.++++|+.++ .+..||..+++-.. .+......+.....++.+.++|+.| | ++..||.+... .
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~-W 361 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ-W 361 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCc-e
Confidence 3456777777763 57888887764333 3333333445555578899999998 3 56778877433 2
Q ss_pred EE--EecCccCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 285 IC--KLAGHKSEVCGLKWSHDDRELASGGNDN-----QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 285 ~~--~~~~h~~~V~~l~~s~~~~~lasg~~Dg-----~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
.. .+........... -+|...|+||.|| +|-.||..+.+-...-. ........+...-+..|+++||.+.
T Consensus 362 ~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~ 438 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDG 438 (571)
T ss_pred eccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCC
Confidence 22 1221111111111 2688899999886 47778877654322111 1112233333333445888876222
Q ss_pred C----CeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecCCC-----eEEEEECCCCceEEE--ecCCCcc
Q 011916 358 D----RCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQN-----QIMVWKYPSMAKVST--LTGHSLR 424 (475)
Q Consensus 358 d----~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg-----~I~iwd~~~~~~~~~--l~~h~~~ 424 (475)
. ..+..||..+..-...-. ....-..++. -+..|+++ |+.++ .|..||..+.+.... +......
T Consensus 439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~--~~~~iYvv-GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~ 515 (571)
T KOG4441|consen 439 SSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV--LNGKIYVV-GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSA 515 (571)
T ss_pred CccccceEEEEcCCCCceeecCCcccccccceEEE--ECCEEEEE-CCccCCCccceEEEEcCCCCceeEcccCcccccc
Confidence 2 457888887765433222 1111111221 23344444 44444 377788876554332 2223333
Q ss_pred eEEEEECCCCCEEEEEeCCC-----CEEEEecCCC
Q 011916 425 VLYLATSPDGQTIVTGAGDE-----TLRFWNVFPS 454 (475)
Q Consensus 425 V~~l~~spdg~~l~s~s~Dg-----~I~iW~~~~~ 454 (475)
+....+ ++...+.|+.|| +|..||-...
T Consensus 516 ~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 516 VGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 333333 677788888876 4555554443
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0013 Score=58.73 Aligned_cols=141 Identities=13% Similarity=0.133 Sum_probs=83.4
Q ss_pred EEEEeCCCcEEEEECCCCceeE-EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-CceeeeecCC-CCeeE
Q 011916 307 LASGGNDNQLLVWNQHSQQPTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVDTG-SQVCN 383 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~~~-~~v~~ 383 (475)
|..-+.|+.|.-++++..+.-. .-..|.....-+.+ +..+++ |+.+|.|++|+..- +.....+... ..+.+
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~---~~~~~v---G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~ 106 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTA---SAKLMV---GTSDGAVYVFNWNLEGAHSDRVCSGEESIDL 106 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcceeeccc---CceEEe---ecccceEEEecCCccchHHHhhhccccccee
Confidence 3344567777777766433211 11112222111222 222444 44899999998762 1211112222 22222
Q ss_pred -EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC-cceEEEEECCCCCEEEEE--eCCCCEEEEecCCCC
Q 011916 384 -LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS-LRVLYLATSPDGQTIVTG--AGDETLRFWNVFPSL 455 (475)
Q Consensus 384 -l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~l~s~--s~Dg~I~iW~~~~~~ 455 (475)
+.--.++.+..+ +..+|.|+.|++.-.+.+...-.|+ ..+..+..+..+++|+.+ |.|..+++|++..-.
T Consensus 107 ~Ip~~~~~~~~c~--~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 107 GIPNGRDSSLGCV--GAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred ccccccccceeEE--eccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 222223334444 7899999999999888888887888 677777777778888888 888999999987544
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.45 Score=45.71 Aligned_cols=227 Identities=14% Similarity=0.155 Sum_probs=110.4
Q ss_pred CCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCC--CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLG--PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~--~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
++.++.+++..+..++++..+. .+...+.++.=..+.+. -.+....+....++..++ ++..|.|..=. +.++.-+
T Consensus 61 ~~~l~~I~f~~~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~ 137 (302)
T PF14870_consen 61 DYHLNSISFDGNEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQ 137 (302)
T ss_dssp --EEEEEEEETTEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEE
T ss_pred eeeEEEEEecCCceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCee
Confidence 4567788887777777776654 44444445433332221 123444444444443333 34445543321 2232222
Q ss_pred -EecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 246 -TFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 246 -~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
....-.+.+..+.- ++.+++++..-....-||-- ..............|..|.|.+++.+.+.+ ..|.|+.=+..
T Consensus 138 ~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G-~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 138 AVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPG-QTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp EEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT--SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred EcccCCcceeEeEEECCCCcEEEEECcccEEEEecCC-CccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 22334456666665 56777777665556677764 222233333456789999999998776654 77888887722
Q ss_pred C-CceeEE----EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----CCCCeeEEEEcCCCCeE
Q 011916 323 S-QQPTLR----LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD----TGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 323 ~-~~~~~~----~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l 393 (475)
. .+.-.. .......+..++|.+++. +.++|+ .|. .+.....|+.-.... ..+.+..+.|....+-+
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg---~G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf 290 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG---SGT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGF 290 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES---TT--EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEE
T ss_pred CCccccccccCCcccCceeeEEEEecCCCC-EEEEeC---Ccc-EEEeCCCCccceECccccCCCCceEEEEEcCCCceE
Confidence 2 111111 111233478999998876 666664 453 344556666555543 35678899998877777
Q ss_pred EEEEecCCCeEEEE
Q 011916 394 VSTHGYSQNQIMVW 407 (475)
Q Consensus 394 ~~~~g~~dg~I~iw 407 (475)
+. | .+|.|.-|
T Consensus 291 ~l--G-~~G~ll~~ 301 (302)
T PF14870_consen 291 VL--G-QDGVLLRY 301 (302)
T ss_dssp EE----STTEEEEE
T ss_pred EE--C-CCcEEEEe
Confidence 76 5 67776554
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=1.1 Score=48.64 Aligned_cols=249 Identities=10% Similarity=0.029 Sum_probs=128.2
Q ss_pred CceeccCCCCC---CCCceeEEecCCC-CEEEEEcC--C----eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE
Q 011916 156 PHKVLDAPSLQ---DDFYLNLVDWSSQ-NVLAVGLG--T----CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS 225 (475)
Q Consensus 156 p~~~l~~p~~~---~d~~v~~l~ws~~-~~la~~~~--~----~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la 225 (475)
++.+||.-.+. ..+.+..+.|+|+ ++++.+.| | .|++.|+.++..+... +.. .-..++|.+|++.|+
T Consensus 111 ~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~--~~~~~~w~~D~~~~~ 187 (686)
T PRK10115 111 WETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDN--VEPSFVWANDSWTFY 187 (686)
T ss_pred CEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccC--cceEEEEeeCCCEEE
Confidence 56777755442 2355777899987 66776653 2 5899999888632211 111 114699999998777
Q ss_pred EEeCC------CeEEEEECCCC--eeeEEecCCCCceEEEEe---CCCEEEEEe---CCCcEEEEECCCC-CccEEEecC
Q 011916 226 VGTNL------GQVQVWDGTQC--KRVRTFGGHQTRAGVLAW---NSRILSSGS---RDRNILQHDLRVS-SDYICKLAG 290 (475)
Q Consensus 226 ~g~~d------g~v~iwd~~~~--~~~~~~~~h~~~v~~l~~---~~~~l~sgs---~dg~I~iwd~~~~-~~~~~~~~~ 290 (475)
....+ ..|..+++.++ +....+...........+ ++.+++..+ .++.+.+++.... ......+..
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 267 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR 267 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC
Confidence 76543 35778888877 334444433333332222 556555443 3457888885422 222222222
Q ss_pred ccCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEEEecc-c-cceeEEEECCCCCcEEEEecCCCCCeE--EE
Q 011916 291 HKSEVCGLKWSHDDRELASGGN---DNQLLVWNQHSQQPTLRLTEH-T-AAVKAIAWSPHQSSLLASGGGTADRCI--RF 363 (475)
Q Consensus 291 h~~~V~~l~~s~~~~~lasg~~---Dg~I~iwd~~~~~~~~~~~~h-~-~~v~~l~~sp~~~~ll~sg~Gs~d~~I--~i 363 (475)
-......+. +..+.+++.... ...|...++........+..+ . ..+..+.+. +.+|+++.. .++.- .+
T Consensus 268 ~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~--~~g~~~l~~ 342 (686)
T PRK10115 268 RKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER--QRGLTSLRQ 342 (686)
T ss_pred CCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE--eCCEEEEEE
Confidence 222222222 223333333222 123444455421122233334 3 367888887 445766654 56554 44
Q ss_pred EECCCCceeeeecC--CCCeeEEEEc--CCCCeEEEEEe--cCCCeEEEEECCCCc
Q 011916 364 WNTSNGHQLNSVDT--GSQVCNLAWS--KNVNELVSTHG--YSQNQIMVWKYPSMA 413 (475)
Q Consensus 364 wd~~~~~~~~~~~~--~~~v~~l~~s--~~~~~l~~~~g--~~dg~I~iwd~~~~~ 413 (475)
++..++ .+..+.. ...+..+.++ +++..++.... ..-+.++.+|..+++
T Consensus 343 ~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 343 INRKTR-EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EcCCCC-ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 554433 3344332 2223333344 44444443212 235678889987764
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.6 Score=44.83 Aligned_cols=267 Identities=13% Similarity=0.098 Sum_probs=124.5
Q ss_pred CCceeEEecCC-CCEEEEEcCCeEEEEECCCCcEEEEeeCCC----CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 168 DFYLNLVDWSS-QNVLAVGLGTCVYLWTASNSKVTRLCDLGP----GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 168 d~~v~~l~ws~-~~~la~~~~~~V~lw~~~~~~~~~~~~~~~----~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
+..+..|.|.. +.-++++..+.|. -..+.|+.=....... .-...+|.|.. ...+++| ..|. .+...+.++
T Consensus 16 ~~~l~dV~F~d~~~G~~VG~~g~il-~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~-~~g~ivG-~~g~-ll~T~DgG~ 91 (302)
T PF14870_consen 16 DKPLLDVAFVDPNHGWAVGAYGTIL-KTTDGGKTWQPVSLDLDNPFDYHLNSISFDG-NEGWIVG-EPGL-LLHTTDGGK 91 (302)
T ss_dssp SS-EEEEEESSSS-EEEEETTTEEE-EESSTTSS-EE-----S-----EEEEEEEET-TEEEEEE-ETTE-EEEESSTTS
T ss_pred CCceEEEEEecCCEEEEEecCCEEE-EECCCCccccccccCCCccceeeEEEEEecC-CceEEEc-CCce-EEEecCCCC
Confidence 34566677775 4677778777543 2333333211111111 23466787764 3344444 4453 333334443
Q ss_pred eeEEec---CCCCceEEE-EeCCCEEEEEeCCCcEEEEECCCCC-ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 243 RVRTFG---GHQTRAGVL-AWNSRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 243 ~~~~~~---~h~~~v~~l-~~~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
.-..+. .-.+....+ +.+.......+..|.|.. ....+ ........-.+.+..+.-++||++++++..-+.+.
T Consensus 92 tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~G~iy~--T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~ 169 (302)
T PF14870_consen 92 TWERVPLSSKLPGSPFGITALGDGSAELAGDRGAIYR--TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYS 169 (302)
T ss_dssp S-EE----TT-SS-EEEEEEEETTEEEEEETT--EEE--ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEE
T ss_pred CcEEeecCCCCCCCeeEEEEcCCCcEEEEcCCCcEEE--eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEE
Confidence 333221 112222222 334444444555555433 22233 33344455567789999999999999987765666
Q ss_pred EEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE-CCCCceeee----e-cCCCCeeEEEEcCCCC
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN-TSNGHQLNS----V-DTGSQVCNLAWSKNVN 391 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd-~~~~~~~~~----~-~~~~~v~~l~~s~~~~ 391 (475)
-||--...-...-......|.+|.|.|++...+++ ..+.|++=+ ....+.... + .....+..++|.+++.
T Consensus 170 s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~----~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~ 245 (302)
T PF14870_consen 170 SWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA----RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE 245 (302)
T ss_dssp EE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE----TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-
T ss_pred EecCCCccceEEccCccceehhceecCCCCEEEEe----CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC
Confidence 78765322222223356789999999998854543 678888877 222222222 1 1233489999999877
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEec---CCCcceEEEEECCCCCEEEEEeCCCCEEEE
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLT---GHSLRVLYLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
..++ |. .|.+ +.....++.-.... .-...++.+.|..+.+-++ .+.+|.|.-|
T Consensus 246 ~wa~--gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 246 IWAV--GG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp EEEE--ES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred EEEE--eC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 7766 53 4433 33334443333322 2344578888876655454 4578877655
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.84 Score=49.71 Aligned_cols=195 Identities=10% Similarity=0.088 Sum_probs=114.9
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCc--------eEEEEe------------------CCCEEEEEeCCCcEE
Q 011916 221 GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTR--------AGVLAW------------------NSRILSSGSRDRNIL 274 (475)
Q Consensus 221 g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~--------v~~l~~------------------~~~~l~sgs~dg~I~ 274 (475)
+..|++++.++.|.-.|..+++.+..+...... ...+++ .+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 557777888889999999999888776532211 111222 234788888999999
Q ss_pred EEECCCCCccEEEecCccCCE-------------EEEEEcC--CCCEEEEEeC----------CCcEEEEECCCCceeEE
Q 011916 275 QHDLRVSSDYICKLAGHKSEV-------------CGLKWSH--DDRELASGGN----------DNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 275 iwd~~~~~~~~~~~~~h~~~V-------------~~l~~s~--~~~~lasg~~----------Dg~I~iwd~~~~~~~~~ 329 (475)
-.|.+ .++.+..+. ..+.| ..+.-.| .+..+++|+. +|.|+-+|.++++.+..
T Consensus 274 ALDA~-TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDAD-TGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECC-CCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 99987 444443332 11111 0111122 2346666642 68899999999998887
Q ss_pred Eecc---------cc--------ce-eEEEECCCCCcEEEEecC----------------CCCCeEEEEECCCCceeeee
Q 011916 330 LTEH---------TA--------AV-KAIAWSPHQSSLLASGGG----------------TADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 330 ~~~h---------~~--------~v-~~l~~sp~~~~ll~sg~G----------------s~d~~I~iwd~~~~~~~~~~ 375 (475)
+..- .+ .+ ..+++.+....++. +.| ...+.|.-.|.+||+....+
T Consensus 352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~-ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~ 430 (764)
T TIGR03074 352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYL-PMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVF 430 (764)
T ss_pred EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEE-eCCCccccccCCccccCcccccceEEEEeCCCCceEEEe
Confidence 6421 00 01 23344444442322 111 12466788899999988777
Q ss_pred cC-C---------CCeeEEEEcC-CCC-eEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 376 DT-G---------SQVCNLAWSK-NVN-ELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 376 ~~-~---------~~v~~l~~s~-~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
+. . .+..-+.+.. +|+ .=++.++..+|.++++|-.+++.+...
T Consensus 431 Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 431 QTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 53 1 1222223333 553 112333889999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.22 Score=49.44 Aligned_cols=197 Identities=13% Similarity=0.139 Sum_probs=92.2
Q ss_pred CEEEEEe-CCCcEEEEECCCCCc---cEEEecC---cc----CCEEEEEEcCCCCEEEEEe--C----CCcEEEEECCCC
Q 011916 262 RILSSGS-RDRNILQHDLRVSSD---YICKLAG---HK----SEVCGLKWSHDDRELASGG--N----DNQLLVWNQHSQ 324 (475)
Q Consensus 262 ~~l~sgs-~dg~I~iwd~~~~~~---~~~~~~~---h~----~~V~~l~~s~~~~~lasg~--~----Dg~I~iwd~~~~ 324 (475)
++|+..+ ..+.|.|.|+..... ..+.+.. +. ..-..+..-|+|+.++++- . -|-+.+.|-++.
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf 167 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF 167 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc
Confidence 3444444 666777777763221 2222221 11 1223344457888888852 2 246888888877
Q ss_pred ceeEEEecc---ccceeEEEECCCCCcEEEEec-----------------CCCCCeEEEEECCCCceeeeecCCC---Ce
Q 011916 325 QPTLRLTEH---TAAVKAIAWSPHQSSLLASGG-----------------GTADRCIRFWNTSNGHQLNSVDTGS---QV 381 (475)
Q Consensus 325 ~~~~~~~~h---~~~v~~l~~sp~~~~ll~sg~-----------------Gs~d~~I~iwd~~~~~~~~~~~~~~---~v 381 (475)
+........ ...-..+-|.|....++++.- +....++.+||+.+.+.++.++.+. -.
T Consensus 168 ~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~p 247 (461)
T PF05694_consen 168 EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMP 247 (461)
T ss_dssp -EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEE
T ss_pred cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCce
Confidence 666555432 223466778887775555532 1245789999999999999998763 35
Q ss_pred eEEEEc--CCCCeEEEEEecCCCeEEEEECCCCc----eEEEecCC-----------------CcceEEEEECCCCCEEE
Q 011916 382 CNLAWS--KNVNELVSTHGYSQNQIMVWKYPSMA----KVSTLTGH-----------------SLRVLYLATSPDGQTIV 438 (475)
Q Consensus 382 ~~l~~s--~~~~~l~~~~g~~dg~I~iwd~~~~~----~~~~l~~h-----------------~~~V~~l~~spdg~~l~ 438 (475)
..+.|. |+..+=++.+.-+....++|....++ .+.++..- ..-|+.+..|.|.++|.
T Consensus 248 LEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLY 327 (461)
T PF05694_consen 248 LEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLY 327 (461)
T ss_dssp EEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEE
T ss_pred EEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEE
Confidence 556664 44555555333333333444434442 33333221 23479999999999998
Q ss_pred EEeC-CCCEEEEecCCCCCCC
Q 011916 439 TGAG-DETLRFWNVFPSLKAP 458 (475)
Q Consensus 439 s~s~-Dg~I~iW~~~~~~~~~ 458 (475)
.... +|.|+.||+......+
T Consensus 328 vs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 328 VSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp EEETTTTEEEEEE-SSTTS-E
T ss_pred EEcccCCcEEEEecCCCCCCc
Confidence 7765 8999999998766543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.59 Score=43.78 Aligned_cols=267 Identities=13% Similarity=0.030 Sum_probs=147.7
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---eeeEEecC
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---KRVRTFGG 249 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---~~~~~~~~ 249 (475)
+.++.+....+-.+..++|.|+.+.....+... ...+.-.++.. .|++..++..+.-+.+.|+.+. .+...+..
T Consensus 92 v~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~ 169 (370)
T COG5276 92 VRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYAL 169 (370)
T ss_pred eEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeecc
Confidence 556666777777788899999988765444432 22345555544 5889988886666778887654 33444555
Q ss_pred CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccC-CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 011916 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS-EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL 328 (475)
Q Consensus 250 h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~ 328 (475)
.......++.+|++-..+..|+-+.+.|+.....++..-.-..+ .+.++..+++-.+++..+ --+.+-|....+...
T Consensus 170 ~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~s~~ssp~ 247 (370)
T COG5276 170 PGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDVSGPSSPT 247 (370)
T ss_pred CCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEecCCCCCce
Confidence 55556778889999999999999999999866655443332233 688888877665655544 347777877666444
Q ss_pred EEec-cccceeEE-EECCCCCcEEEEecCCCCCeEEEEECCCCc---eeeeecCCC-CeeEEEEcCCCCeEEEEEecCCC
Q 011916 329 RLTE-HTAAVKAI-AWSPHQSSLLASGGGTADRCIRFWNTSNGH---QLNSVDTGS-QVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 329 ~~~~-h~~~v~~l-~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~---~~~~~~~~~-~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
.+.. ....+.++ .+.-.+++..+.- .+.-+.+-|+.+.. ....+.+.+ +...+..+ +.++.. .. .+
T Consensus 248 ~~gsyet~~p~~~s~v~Vs~~~~Yvad---ga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~yi--ad-kn 319 (370)
T COG5276 248 VFGSYETSNPVSISTVPVSGEYAYVAD---GAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNYI--AD-KN 319 (370)
T ss_pred EeeccccCCcccccceecccceeeeec---cccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeEe--cc-CC
Confidence 4322 11112222 1222233333332 23334444443321 112222222 22223222 222222 11 11
Q ss_pred eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
...+.+....+......+-...+.+.+.+-+.+.+.+...++.+.||+..
T Consensus 320 ~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 320 TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEEec
Confidence 33333433322222222222233444444566788888999999999863
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.8 Score=44.93 Aligned_cols=264 Identities=11% Similarity=0.048 Sum_probs=130.6
Q ss_pred eeEEecC-CCCEEEEEcCCeEEEEECCCCc-EEEEee-C-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 171 LNLVDWS-SQNVLAVGLGTCVYLWTASNSK-VTRLCD-L-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 171 v~~l~ws-~~~~la~~~~~~V~lw~~~~~~-~~~~~~-~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+..+.|. +++.++++.++.|+.=. +.|+ ..+... + .....+.++.|.++ ..+++| ..|.|..- -+.++.-..
T Consensus 48 l~~v~F~d~~~g~avG~~G~il~T~-DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~i~~S-~DgG~tW~~ 123 (334)
T PRK13684 48 LLDIAFTDPNHGWLVGSNRTLLETN-DGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSLLLHT-TDGGKNWTR 123 (334)
T ss_pred eEEEEEeCCCcEEEEECCCEEEEEc-CCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCceEEEE-CCCCCCCeE
Confidence 3445554 45777888776654422 2222 222111 1 12345778888643 344444 44543332 122222222
Q ss_pred ec---CCC-CceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEE-EEC
Q 011916 247 FG---GHQ-TRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV-WNQ 321 (475)
Q Consensus 247 ~~---~h~-~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~i-wd~ 321 (475)
+. ... ......+.++..+..++..|.|..=+-. ..........-...+.++.+.+++.+++++.. |.+.. +|-
T Consensus 124 ~~~~~~~~~~~~~i~~~~~~~~~~~g~~G~i~~S~Dg-G~tW~~~~~~~~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~ 201 (334)
T PRK13684 124 IPLSEKLPGSPYLITALGPGTAEMATNVGAIYRTTDG-GKNWEALVEDAAGVVRNLRRSPDGKYVAVSSR-GNFYSTWEP 201 (334)
T ss_pred ccCCcCCCCCceEEEEECCCcceeeeccceEEEECCC-CCCceeCcCCCcceEEEEEECCCCeEEEEeCC-ceEEEEcCC
Confidence 11 011 1122223344333444445544332211 12222222233457889999998877666554 55543 222
Q ss_pred CCCc-eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-----CCCeeEEEEcCCCCeEEE
Q 011916 322 HSQQ-PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-----GSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 322 ~~~~-~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-----~~~v~~l~~s~~~~~l~~ 395 (475)
.++ -......-...+.++.+.+++.. ++++ ..|.+.+=....|..-..... ...+..+.+.+++..+++
T Consensus 202 -gg~tW~~~~~~~~~~l~~i~~~~~g~~-~~vg---~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~ 276 (334)
T PRK13684 202 -GQTAWTPHQRNSSRRLQSMGFQPDGNL-WMLA---RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG 276 (334)
T ss_pred -CCCeEEEeeCCCcccceeeeEcCCCCE-EEEe---cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEE
Confidence 222 11122234467899999999884 4444 467665333444544333222 234778899998776665
Q ss_pred EEecCCCeEEEEECCCCceEEEec---CCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLT---GHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
| .+|.|. .....++.-.... .-....+.+.|..+++.++ .+..|.|.-|+
T Consensus 277 --G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 277 --G-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred --c-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 4 466554 3344444333332 2223577788877766655 45678887665
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0099 Score=39.62 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=30.0
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
...|.+++|+|..++||+|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 467999999999999999999999999998 4443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.2 Score=48.21 Aligned_cols=96 Identities=15% Similarity=0.144 Sum_probs=58.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEe
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 288 (475)
.-.|..|.++++|++||..+..|.+.+.=.........+.+....|.|-.+ .+. ... ..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~-----------------~v~--~~~--~~ 142 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTV-----------------PVD--ERF--FT 142 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEE-----------------Eec--hhh--cc
Confidence 357889999999999999888665444332221112223322233332221 111 000 01
Q ss_pred cCccCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCc
Q 011916 289 AGHKSEVCGLKWSHD---DRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~---~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
..+...|..+.|+|. +..|++-..|+++++||+....
T Consensus 143 ~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 143 SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 234456889999985 5789999999999999997543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.52 E-value=1.6 Score=47.32 Aligned_cols=94 Identities=11% Similarity=0.085 Sum_probs=67.0
Q ss_pred CCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--eEEEec-CCCcceEEEEECC
Q 011916 357 ADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA--KVSTLT-GHSLRVLYLATSP 432 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~--~~~~l~-~h~~~V~~l~~sp 432 (475)
-...|++|++.+.+.++.- .+...+..+...-.|.++++ |..-+.+.+..+...+ ....-. .+....+.+.+-.
T Consensus 846 In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~V--gDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~ 923 (1096)
T KOG1897|consen 846 INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAV--GDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILD 923 (1096)
T ss_pred cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEE--eeccceEEEEEEeccCCceEEeehhhCccceeeEEEec
Confidence 5789999999888555443 56678899999999999999 8888888877766554 322222 3667777777765
Q ss_pred CCCEEEEEeCCCCEEEEecCC
Q 011916 433 DGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~iW~~~~ 453 (475)
+. .++.+..+|.+.+-..+.
T Consensus 924 ~d-~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 924 DD-TYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred Cc-eEEeecccccEEEEEecC
Confidence 54 445566788888777663
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=63.53 Aligned_cols=111 Identities=20% Similarity=0.297 Sum_probs=79.2
Q ss_pred CCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 251 QTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 251 ~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
...+.+.+.-+..++.|+..|.+...|+...-.....-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+
T Consensus 89 ~~~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 89 AAGVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred CcceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 34555555566778888888999888887432222333335678999999999999999999999999999999999888
Q ss_pred eccccceeEE---EECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 331 TEHTAAVKAI---AWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 331 ~~h~~~v~~l---~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
..|..+..++ .+..++..++. + ...|. +|.+
T Consensus 169 ~e~~ap~t~vi~v~~t~~nS~llt-~--D~~Gs--f~~l 202 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTSQNSKLLT-S--DTGGS--FWKL 202 (1206)
T ss_pred eecCCccceEEEEEEeCCCcEEEE-c--cCCCc--eEEE
Confidence 8877665554 44555663444 2 13443 6654
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.78 Score=42.77 Aligned_cols=189 Identities=11% Similarity=0.124 Sum_probs=117.6
Q ss_pred EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEecCCCC-ceEEEEe-CCCEEEEEeCCCcEEE
Q 011916 200 VTRLCDLGPGDSVCSVQWTREGSYISVGTNLG--QVQVWDGTQCKRVRTFGGHQT-RAGVLAW-NSRILSSGSRDRNILQ 275 (475)
Q Consensus 200 ~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg--~v~iwd~~~~~~~~~~~~h~~-~v~~l~~-~~~~l~sgs~dg~I~i 275 (475)
++.........-...+.|..+|.++-+.+.-| .|+.+|+.+++......-... ---.++. ++.+....-.++...+
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFV 114 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEE
Confidence 34444334445667888877887777766666 689999999988766542221 1222333 4555566667889999
Q ss_pred EECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc--c---cceeEEEECCCCCcEE
Q 011916 276 HDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH--T---AAVKAIAWSPHQSSLL 350 (475)
Q Consensus 276 wd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h--~---~~v~~l~~sp~~~~ll 350 (475)
||.. .-+.+..+. ..++=.+++ .|++.|+.......|+++|..+.+....+.-. . ..++-+.|- +|. ++
T Consensus 115 yd~~-tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-Iy 188 (264)
T PF05096_consen 115 YDPN-TLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IY 188 (264)
T ss_dssp EETT-TTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE-EE
T ss_pred Eccc-cceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE-EE
Confidence 9997 455555554 334556676 46777777777789999999887766555432 1 245667776 443 66
Q ss_pred EEecCCCCCeEEEEECCCCceeeeecC----------------CCCeeEEEEcCCCCeEEEE
Q 011916 351 ASGGGTADRCIRFWNTSNGHQLNSVDT----------------GSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~~~~~~~~~~----------------~~~v~~l~~s~~~~~l~~~ 396 (475)
|--= ....|...|..+|+.+..++. ..-...|+|.|..+.++++
T Consensus 189 ANVW--~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 189 ANVW--QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp EEET--TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred EEeC--CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 6543 677888899999998877631 1347889999988888875
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.8 Score=46.93 Aligned_cols=237 Identities=8% Similarity=0.050 Sum_probs=118.2
Q ss_pred cEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeC-C-----CcEEEEE
Q 011916 211 SVCSVQWTREGSYISVGTNL-----GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR-D-----RNILQHD 277 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~d-----g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~-d-----g~I~iwd 277 (475)
.+..+.|+|||++|+.+... ..|++.|+.+++.+...-... -..++| +++.|+.... + ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 46678899999999887543 358899998886432221111 145788 4555544432 2 3677778
Q ss_pred CCCCC-ccEEEecCccCCEE-EEEEcCCCCEEEEEeC---CCcEEEEECC--CCceeEEEeccccceeEEEECCCCCcEE
Q 011916 278 LRVSS-DYICKLAGHKSEVC-GLKWSHDDRELASGGN---DNQLLVWNQH--SQQPTLRLTEHTAAVKAIAWSPHQSSLL 350 (475)
Q Consensus 278 ~~~~~-~~~~~~~~h~~~V~-~l~~s~~~~~lasg~~---Dg~I~iwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~ll 350 (475)
+.+.. .....+........ .+..+.++++++..+. ++.+.+++.. .+.....+.........+. +..+..++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~ 284 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYL 284 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEE
Confidence 87542 22223332222233 3333448887665443 4578888853 3332222222222222222 33344344
Q ss_pred EEecCCCCCeEEEEECCC-CceeeeecC--CCCeeEEEEcCCCCeEEEEEecCCCeE--EEEECCCCceEEEec-CCCcc
Q 011916 351 ASGGGTADRCIRFWNTSN-GHQLNSVDT--GSQVCNLAWSKNVNELVSTHGYSQNQI--MVWKYPSMAKVSTLT-GHSLR 424 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~-~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g~~dg~I--~iwd~~~~~~~~~l~-~h~~~ 424 (475)
.+..+.....|...++.+ ++....+.. ...+..+.+. ++.|+.. ...++.- .+++.... .+..+. .....
T Consensus 285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~-~~~~g~~~l~~~~~~~~-~~~~l~~~~~~~ 360 (686)
T PRK10115 285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVE-ERQRGLTSLRQINRKTR-EVIGIAFDDPAY 360 (686)
T ss_pred EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEE-EEeCCEEEEEEEcCCCC-ceEEecCCCCce
Confidence 443222344555556552 222222333 2357777777 4455553 4456654 44554332 344443 22223
Q ss_pred eEEEEEC--CCC-CEEEEEeC---CCCEEEEecCCC
Q 011916 425 VLYLATS--PDG-QTIVTGAG---DETLRFWNVFPS 454 (475)
Q Consensus 425 V~~l~~s--pdg-~~l~s~s~---Dg~I~iW~~~~~ 454 (475)
+..+.++ +++ .++++.+. -+.+..+|+.++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 3334444 333 34444433 356777777654
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0073 Score=54.06 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=63.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCC-eeeEEecCCCCceEEEEe---CCCEEEEEeCCCcEEEEECCCCCccEEEecCcc-CC
Q 011916 220 EGSYISVGTNLGQVQVWDGTQC-KRVRTFGGHQTRAGVLAW---NSRILSSGSRDRNILQHDLRVSSDYICKLAGHK-SE 294 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~-~~~~~~~~h~~~v~~l~~---~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~ 294 (475)
-+..+++|+.+|.|.+|..... .....+......|-++-. ++.+..+++.||.|+.|++. ..+.+.....|. ..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~-p~k~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIK-PNKVLGYVGQHNFES 147 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccc-cCceeeeeccccCCC
Confidence 3467999999999999987621 111112222233333333 24588999999999999998 555555555566 44
Q ss_pred EEEEEEcCCCCEEEEE--eCCCcEEEEECC
Q 011916 295 VCGLKWSHDDRELASG--GNDNQLLVWNQH 322 (475)
Q Consensus 295 V~~l~~s~~~~~lasg--~~Dg~I~iwd~~ 322 (475)
+..+..+..++.++++ +.|..++.|++.
T Consensus 148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred cceeEEecCCceEEeeccccchhhhhcchh
Confidence 4444444455555555 555666666654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.98 Score=42.17 Aligned_cols=225 Identities=14% Similarity=0.167 Sum_probs=129.0
Q ss_pred EecCCC--CEEEEEc--CCeEEEEECCCCcEEEEeeCCC-CCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCC-e
Q 011916 174 VDWSSQ--NVLAVGL--GTCVYLWTASNSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTNL-----GQVQVWDGTQC-K 242 (475)
Q Consensus 174 l~ws~~--~~la~~~--~~~V~lw~~~~~~~~~~~~~~~-~~~V~~v~~spdg~~la~g~~d-----g~v~iwd~~~~-~ 242 (475)
+.++|. .-++.+- +...+++|..+.+...+..... ...--.-.|+|||.+|...-+| |.|-|||...+ +
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 556654 2333333 5568889998887666554211 1122234699999999876543 78999998743 5
Q ss_pred eeEEecCCCCceEEEEe--CCCEEEEEeCCCcEE--------------------EEECCCCCccEE--Eec--CccCCEE
Q 011916 243 RVRTFGGHQTRAGVLAW--NSRILSSGSRDRNIL--------------------QHDLRVSSDYIC--KLA--GHKSEVC 296 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~--------------------iwd~~~~~~~~~--~~~--~h~~~V~ 296 (475)
.+.++..|.-.-..+.| +|..++.+. |-|. +.|-. .+..+. .+. .+.-.|.
T Consensus 153 rvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMePSlvlld~a-tG~liekh~Lp~~l~~lSiR 229 (366)
T COG3490 153 RVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDAA-TGNLIEKHTLPASLRQLSIR 229 (366)
T ss_pred eecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCccEEEEecc-ccchhhhccCchhhhhccee
Confidence 66777788777777777 677777653 2232 22322 122111 122 2344577
Q ss_pred EEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEe-------ccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 297 GLKWSHDDRELASGGNDN-----QLLVWNQHSQQPTLRLT-------EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 297 ~l~~s~~~~~lasg~~Dg-----~I~iwd~~~~~~~~~~~-------~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
.++..+||..++-+-..| --.+=-...++++.-+. .....|-+|+.+-+...++++.- ..+...+|
T Consensus 230 Hld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP--~GN~~vi~ 307 (366)
T COG3490 230 HLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP--RGNRAVIW 307 (366)
T ss_pred eeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC--CCCeEEEE
Confidence 777777776655443222 11121222334433322 13456778888877776777654 77889999
Q ss_pred ECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 365 NTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 365 d~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
|..+|..+....... ...++ +...-+++ .+.+|.+.++.
T Consensus 308 da~tG~vv~~a~l~d-aaGva--~~~~gf~v--ssg~G~~~~~s 346 (366)
T COG3490 308 DAATGAVVSEAALPD-AAGVA--AAKGGFAV--SSGQGRIIFYS 346 (366)
T ss_pred EcCCCcEEecccccc-cccce--eccCceEE--ecCCceEEecc
Confidence 999998876653221 12222 22333444 33467777764
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.5 Score=43.75 Aligned_cols=140 Identities=13% Similarity=0.179 Sum_probs=75.9
Q ss_pred CcEEEEEEcCCCCEEEEEe-----------CCC-eEEEEECCC--Ce--eeEEecCCCCceEEEEeC-CCEEEEEeCCCc
Q 011916 210 DSVCSVQWTREGSYISVGT-----------NLG-QVQVWDGTQ--CK--RVRTFGGHQTRAGVLAWN-SRILSSGSRDRN 272 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~-----------~dg-~v~iwd~~~--~~--~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~ 272 (475)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....+++. +. |+++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 4566889999998776642 223 777776432 22 223343333445677773 33 555555443
Q ss_pred EEEEECCCCC----cc--E-EEecC----ccCCEEEEEEcCCCCEEEEEeCC-------------------CcEEEEECC
Q 011916 273 ILQHDLRVSS----DY--I-CKLAG----HKSEVCGLKWSHDDRELASGGND-------------------NQLLVWNQH 322 (475)
Q Consensus 273 I~iwd~~~~~----~~--~-~~~~~----h~~~V~~l~~s~~~~~lasg~~D-------------------g~I~iwd~~ 322 (475)
.++.|..... .. + ..+.. +......+.|.|||.+.++-+.. +.|.-++..
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pd 172 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPD 172 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecC
Confidence 3344553211 11 1 11222 13447789999999876654421 345555655
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEE
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
.++.. .+...-.....++|+|+|.. +++
T Consensus 173 g~~~e-~~a~G~rnp~Gl~~d~~G~l-~~t 200 (367)
T TIGR02604 173 GGKLR-VVAHGFQNPYGHSVDSWGDV-FFC 200 (367)
T ss_pred CCeEE-EEecCcCCCccceECCCCCE-EEE
Confidence 54432 22222233568999999884 444
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.27 Score=51.72 Aligned_cols=189 Identities=10% Similarity=0.115 Sum_probs=85.9
Q ss_pred EEEeCCCEEEEEeCCC------cEEEEECCCCCccEEEecC---ccCCEEEEEEcCCCCEEEEEeCC-----CcEEEEEC
Q 011916 256 VLAWNSRILSSGSRDR------NILQHDLRVSSDYICKLAG---HKSEVCGLKWSHDDRELASGGND-----NQLLVWNQ 321 (475)
Q Consensus 256 ~l~~~~~~l~sgs~dg------~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~ 321 (475)
++..++.+++.|+.++ .+..||... ... ..+.. .......+. -++..++.||.+ ..+..||.
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~-~~W-~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~ 365 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKT-KSW-NKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKP 365 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCC-Cee-eECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcC
Confidence 4445666666666542 466777653 222 12111 111122222 267777888865 35778887
Q ss_pred CCCceeE--EEeccccceeEEEECCCCCcEEEEecCCCC----CeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeE
Q 011916 322 HSQQPTL--RLTEHTAAVKAIAWSPHQSSLLASGGGTAD----RCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 322 ~~~~~~~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d----~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l 393 (475)
.+.+-.. .+...... .+++. .+..+++.||-..+ ..+..||..+.+-... ......-.+++. -++ .|
T Consensus 366 ~~~~W~~~~~lp~~r~~-~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~-~i 440 (534)
T PHA03098 366 GESKWREEPPLIFPRYN-PCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDG-KI 440 (534)
T ss_pred CCCceeeCCCcCcCCcc-ceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECC-EE
Confidence 7654221 11111111 11122 13347777641111 4688899876532221 111111111222 233 44
Q ss_pred EEEEecCC-------CeEEEEECCCCceEEE--ecCCCcceEEEEECCCCCEEEEEeCC-----CCEEEEecCCCC
Q 011916 394 VSTHGYSQ-------NQIMVWKYPSMAKVST--LTGHSLRVLYLATSPDGQTIVTGAGD-----ETLRFWNVFPSL 455 (475)
Q Consensus 394 ~~~~g~~d-------g~I~iwd~~~~~~~~~--l~~h~~~V~~l~~spdg~~l~s~s~D-----g~I~iW~~~~~~ 455 (475)
++..|... ..+.+||..+.+.... +.........+.+ +++.++.|+.+ ..|.+||.....
T Consensus 441 yv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 441 YVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred EEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 44433321 2388888876543321 1111111112222 67777777654 357777766544
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.23 Score=52.21 Aligned_cols=108 Identities=18% Similarity=0.326 Sum_probs=74.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-ccccceeEEEE--CCCCCcEEEEecCCCCCeEEEEECC----
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-EHTAAVKAIAW--SPHQSSLLASGGGTADRCIRFWNTS---- 367 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~--sp~~~~ll~sg~Gs~d~~I~iwd~~---- 367 (475)
..-+.-+.-++..++-+....+.|||.+.+...+.-. ...+.|.++.| .|++..+++.| ..+.|.+|--.
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVG---f~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVG---FPHHVLLYTQLRYDY 108 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEE---cCcEEEEEEccchhh
Confidence 3444444444444444444589999999887544322 35788999999 47899899998 58888888542
Q ss_pred -----CCceeeeec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 368 -----NGHQLNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 368 -----~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
+...+..++ +..+|.+..|.++|..++. ..+++.|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~----sGNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG----SGNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEE----eCCEEEEECC
Confidence 123444442 4478999999999988876 3578999875
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.26 Score=51.83 Aligned_cols=146 Identities=14% Similarity=0.102 Sum_probs=73.2
Q ss_pred CCCCEEEEEeCCC------eEEEEECCCCeeeEE--ecCCCCceEEEEeCCCEEEEEeCCC-----cEEEEECCCCCccE
Q 011916 219 REGSYISVGTNLG------QVQVWDGTQCKRVRT--FGGHQTRAGVLAWNSRILSSGSRDR-----NILQHDLRVSSDYI 285 (475)
Q Consensus 219 pdg~~la~g~~dg------~v~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~~ 285 (475)
.++..+++|+.++ .+..||..+.+-... +.........+..++.+++.||.++ .+..||.... ...
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~-~W~ 371 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGES-KWR 371 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCC-cee
Confidence 3566677776542 477888777654322 2212223344556788888888763 4667777632 211
Q ss_pred E--EecCccCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecC
Q 011916 286 C--KLAGHKSEVCGLKWSHDDRELASGGND------NQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 286 ~--~~~~h~~~V~~l~~s~~~~~lasg~~D------g~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
. .+.......... .-+++..+.||.+ +.+..||..+.+-... +.........+.. + ..+++.||.
T Consensus 372 ~~~~lp~~r~~~~~~--~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~ 446 (534)
T PHA03098 372 EEPPLIFPRYNPCVV--NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--D-GKIYVIGGI 446 (534)
T ss_pred eCCCcCcCCccceEE--EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--C-CEEEEECCc
Confidence 1 111111111112 2256777777732 4588899876543211 1111111111222 3 347777752
Q ss_pred CCC------CeEEEEECCCCc
Q 011916 356 TAD------RCIRFWNTSNGH 370 (475)
Q Consensus 356 s~d------~~I~iwd~~~~~ 370 (475)
+.. ..+.+||..+.+
T Consensus 447 ~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 447 SYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred cCCCCCcccceEEEecCCCCc
Confidence 211 238889987654
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.096 Score=57.02 Aligned_cols=142 Identities=15% Similarity=0.141 Sum_probs=93.3
Q ss_pred CEEEEEEcCCCCEEEEE--eCCCcEEEEECCCCcee--------E---EEeccccceeEEEECCCCCcEEEEecCCCCCe
Q 011916 294 EVCGLKWSHDDRELASG--GNDNQLLVWNQHSQQPT--------L---RLTEHTAAVKAIAWSPHQSSLLASGGGTADRC 360 (475)
Q Consensus 294 ~V~~l~~s~~~~~lasg--~~Dg~I~iwd~~~~~~~--------~---~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~ 360 (475)
.|..+...+|+...++. +++-.|..||++..... . ..........++.|.|.-..-.+... .|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l--~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL--SDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc--cccc
Confidence 34555556676654443 34448899998753211 1 11122344578889987554444433 7899
Q ss_pred EEEEECCCC-ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC----CCcceEEEEECCCCC
Q 011916 361 IRFWNTSNG-HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG----HSLRVLYLATSPDGQ 435 (475)
Q Consensus 361 I~iwd~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~spdg~ 435 (475)
|++..+.-. ..+..+......++++|+|.|+.+++ |...|.+.-|.. +++....+.+ ...+|++|+|-....
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~i--G~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~e 256 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFI--GRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQE 256 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeE--ecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEeccee
Confidence 998876543 23344566778999999999999999 999999998874 4444444432 247899999988777
Q ss_pred EEEEE
Q 011916 436 TIVTG 440 (475)
Q Consensus 436 ~l~s~ 440 (475)
+|++-
T Consensus 257 flvvy 261 (1405)
T KOG3630|consen 257 FLVVY 261 (1405)
T ss_pred EEEEe
Confidence 77754
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.92 E-value=2.2 Score=42.96 Aligned_cols=268 Identities=11% Similarity=0.124 Sum_probs=151.6
Q ss_pred CCEEEEEcCCeEEEEECCCCcE---EEEeeCCCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEECCC--Ce------
Q 011916 179 QNVLAVGLGTCVYLWTASNSKV---TRLCDLGPGDSVCSVQWTR-----EGSYISVGTNLGQVQVWDGTQ--CK------ 242 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~---~~~~~~~~~~~V~~v~~sp-----dg~~la~g~~dg~v~iwd~~~--~~------ 242 (475)
+.+++++..|.++||+...... ..+++..-..+|..|..-. +...||+ -.-..+.||.+.. +.
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcE
Confidence 3677788899999999866542 1333335567888887543 3345665 4457888888621 11
Q ss_pred -eeEEecCCCC--ceEEEEe---C----CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC
Q 011916 243 -RVRTFGGHQT--RAGVLAW---N----SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN 312 (475)
Q Consensus 243 -~~~~~~~h~~--~v~~l~~---~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~ 312 (475)
.+..+..|.- ....+++ . .++|++-+.||.+.+++-+ .......+.. .--...+.+.+....|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe-~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQE-SFAFSRFLPD-FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCC-cEEEEEEcCC-CCCCcCeEEeecCCEEEEecC
Confidence 2222223332 2222332 2 2688999999999999876 2222222322 223345678888888999988
Q ss_pred CCcEEEEECCCC--------------------c---eeEEEec--cccceeEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011916 313 DNQLLVWNQHSQ--------------------Q---PTLRLTE--HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 313 Dg~I~iwd~~~~--------------------~---~~~~~~~--h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~ 367 (475)
+..|..|....- + +..++.- ..-.|..+.++.....+++.| .+.+.+.+-
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg----er~Lf~l~~- 269 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG----ERSLFCLKD- 269 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe----cceEEEEcC-
Confidence 888888875310 0 1111111 111233344444445566664 678888875
Q ss_pred CCceeeeecCCCCeeEEE-Ec----CCCC---eEEEEEecCCCeEEEEECCCCceEEEecCCCcce--EEEEECCCCCEE
Q 011916 368 NGHQLNSVDTGSQVCNLA-WS----KNVN---ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV--LYLATSPDGQTI 437 (475)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~-~s----~~~~---~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V--~~l~~spdg~~l 437 (475)
+|........+....+++ |. ..+. .+++ ++.++.+.||.=.+...-+.+ ...+| .-..|..-...|
T Consensus 270 ~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV--~t~t~~LlVy~d~~L~WsA~l--~~~PVal~v~~~~~~~G~I 345 (418)
T PF14727_consen 270 NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLV--GTHTGTLLVYEDTTLVWSAQL--PHVPVALSVANFNGLKGLI 345 (418)
T ss_pred CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEE--EecCCeEEEEeCCeEEEecCC--CCCCEEEEecccCCCCceE
Confidence 566555555444333322 21 1222 2444 778999999974443333333 22222 222233334588
Q ss_pred EEEeCCCCEEEEecCCCCCCC
Q 011916 438 VTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 438 ~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
++-+.+|.|.+-=+-+.+...
T Consensus 346 V~Ls~~G~L~v~YLGTdPs~~ 366 (418)
T PF14727_consen 346 VSLSDEGQLSVSYLGTDPSLF 366 (418)
T ss_pred EEEcCCCcEEEEEeCCCCccc
Confidence 899999999988777666443
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.028 Score=37.45 Aligned_cols=34 Identities=26% Similarity=0.411 Sum_probs=29.7
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
...|..++|+|...+||.|..||.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4443
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.2 Score=42.10 Aligned_cols=225 Identities=16% Similarity=0.186 Sum_probs=111.5
Q ss_pred EEEcCCCCEEEEEeC-CC--eEEEEECCCCeeeEEecCCCC--ceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEec
Q 011916 215 VQWTREGSYISVGTN-LG--QVQVWDGTQCKRVRTFGGHQT--RAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 215 v~~spdg~~la~g~~-dg--~v~iwd~~~~~~~~~~~~h~~--~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
=+|.+||+.|+.++. +| .+.+.|+++++..+.-.+... .-..++-..+.++-...+..|.-.|+++ .+....+.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T-~e~~~vy~ 119 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDT-LEERVVYE 119 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT---EEEEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCc-CcEEEEEE
Confidence 357889977766655 44 577778888877665443211 2234444556666565667888888874 33334444
Q ss_pred CccCCEEEEEEc--CCCCEEEEEeC----------------------CCcEEEEECCCCceeEEEeccccceeEEEECCC
Q 011916 290 GHKSEVCGLKWS--HDDRELASGGN----------------------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH 345 (475)
Q Consensus 290 ~h~~~V~~l~~s--~~~~~lasg~~----------------------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~ 345 (475)
.....+-...|. .|+..++-.-. ...|...|+.+++....+. -...+..+.|+|.
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPT 198 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETT
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCC
Confidence 444444445553 45665543211 2346666788776544443 4567788999998
Q ss_pred CCcEEEEec-CCCCCe-EEEEECCC-Cceeeeec---CCCCeeEEEEcCCCCeEEEEEecC---CCeEEEEECCCCceEE
Q 011916 346 QSSLLASGG-GTADRC-IRFWNTSN-GHQLNSVD---TGSQVCNLAWSKNVNELVSTHGYS---QNQIMVWKYPSMAKVS 416 (475)
Q Consensus 346 ~~~ll~sg~-Gs~d~~-I~iwd~~~-~~~~~~~~---~~~~v~~l~~s~~~~~l~~~~g~~---dg~I~iwd~~~~~~~~ 416 (475)
...+++-|. |..+.. -+||-+.+ |.....+. ....+..=-|.++|..|....... +..|.-+|..+++...
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 887777643 223332 24554432 33333332 223355557899999887643322 3357777888776533
Q ss_pred EecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 417 TLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 417 ~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
... ......+.-++||+++|-=+.|
T Consensus 279 ~~~--~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 279 LME--MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEE--E-SEEEEEE-TTSSEEEEEE--
T ss_pred EEe--CCceeeeEEcCCCCEEEecCCC
Confidence 222 1235567778999988764444
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.54 Score=48.11 Aligned_cols=148 Identities=16% Similarity=0.265 Sum_probs=86.7
Q ss_pred CCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCceeEEEeccccceeEEEECCC----CCcEEEEecCCCCCeEEEEE
Q 011916 293 SEVCGLKWSHDDRELASGG---NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH----QSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~---~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~----~~~ll~sg~Gs~d~~I~iwd 365 (475)
.+|.+++|. ||+.++-.. ..|.+++=| ...+ +.-..|..+.|.|- -..|+|.- ....|.+|.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~vi----GqFEhV~GlsW~P~~~~~~paLLAVQ---HkkhVtVWq 88 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVI----GQFEHVHGLSWAPPCTADTPALLAVQ---HKKHVTVWQ 88 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEe----eccceeeeeeecCcccCCCCceEEEe---ccceEEEEE
Confidence 468899996 565544322 122222211 1122 22345889999986 34577765 589999999
Q ss_pred CCC-----Cceeeee--cCC--C--CeeEEEEcCCCCeEEEEEecCCCeEEEEECC--CCceEEEecCCCcceEEEEECC
Q 011916 366 TSN-----GHQLNSV--DTG--S--QVCNLAWSKNVNELVSTHGYSQNQIMVWKYP--SMAKVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 366 ~~~-----~~~~~~~--~~~--~--~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~--~~~~~~~l~~h~~~V~~l~~sp 432 (475)
+.- ++.+..- +.. - -...+.|+|....|++.++ ...-.++++. +......+ ...+.|.|.+|.+
T Consensus 89 L~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~--~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~ 165 (671)
T PF15390_consen 89 LCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA--RDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK 165 (671)
T ss_pred eccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEec--CceeEeeeeeeCCceEEEec-cCCceEEEEEecC
Confidence 752 2222211 111 1 2345789999999888644 2222334443 33333444 4567899999999
Q ss_pred CCCEEEEEeCC-CCEEEEecCCC
Q 011916 433 DGQTIVTGAGD-ETLRFWNVFPS 454 (475)
Q Consensus 433 dg~~l~s~s~D-g~I~iW~~~~~ 454 (475)
||+.|+.+-+. =.-+|||-...
T Consensus 166 DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred cCCEEEEEeCCeEEEEEecCchh
Confidence 99998876443 33577775433
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.70 E-value=2.6 Score=42.13 Aligned_cols=239 Identities=11% Similarity=0.145 Sum_probs=111.2
Q ss_pred CcEEEEeeCCCC-CcEEEEEEc-----------CCCCEEEEEe-CCCeEEEEECCC----CeeeEEecC---CC-----C
Q 011916 198 SKVTRLCDLGPG-DSVCSVQWT-----------REGSYISVGT-NLGQVQVWDGTQ----CKRVRTFGG---HQ-----T 252 (475)
Q Consensus 198 ~~~~~~~~~~~~-~~V~~v~~s-----------pdg~~la~g~-~dg~v~iwd~~~----~~~~~~~~~---h~-----~ 252 (475)
++++..+.+.+. +.....-|+ .+.++|++.+ .++.|+|.|+.+ -+..++++. +. .
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~ 131 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSR 131 (461)
T ss_dssp TSEEEEEE-SSS---B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEE
T ss_pred ccEEEEEeCCCCCCccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCC
Confidence 566777766553 567777776 2456777766 678999999874 344555442 11 1
Q ss_pred --ceEEEEeCCCEEEEEe--CC----CcEEEEECCCCCccEEEecCc---cCCEEEEEEcCCCCEEEEEe----------
Q 011916 253 --RAGVLAWNSRILSSGS--RD----RNILQHDLRVSSDYICKLAGH---KSEVCGLKWSHDDRELASGG---------- 311 (475)
Q Consensus 253 --~v~~l~~~~~~l~sgs--~d----g~I~iwd~~~~~~~~~~~~~h---~~~V~~l~~s~~~~~lasg~---------- 311 (475)
.+.|+. +|++++++- .+ |.+.+.|-+ ........... ...-..+-|.|..+.++|..
T Consensus 132 PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~~-tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~G 209 (461)
T PF05694_consen 132 PHTVHCLP-DGRIMISALGDADGNGPGGFVLLDGE-TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKG 209 (461)
T ss_dssp EEEEEE-S-S--EEEEEEEETTS-S--EEEEE-TT-T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT-
T ss_pred CceeeecC-CccEEEEeccCCCCCCCCcEEEEcCc-cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccC
Confidence 122221 566777652 22 346666655 23333333321 22345677788777888754
Q ss_pred ----------CCCcEEEEECCCCceeEEEeccc--cceeEEEEC--CCCCcEEEEecCCCCCeEEEEE-CCCCc----ee
Q 011916 312 ----------NDNQLLVWNQHSQQPTLRLTEHT--AAVKAIAWS--PHQSSLLASGGGTADRCIRFWN-TSNGH----QL 372 (475)
Q Consensus 312 ----------~Dg~I~iwd~~~~~~~~~~~~h~--~~v~~l~~s--p~~~~ll~sg~Gs~d~~I~iwd-~~~~~----~~ 372 (475)
...++.+||+.+.+.++++.-.. .....|.|. |+..+=++.+. -..+|..|- ...++ .+
T Consensus 210 f~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a--Lss~i~~~~k~~~g~W~a~kV 287 (461)
T PF05694_consen 210 FNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA--LSSSIWRFYKDDDGEWAAEKV 287 (461)
T ss_dssp --TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE----EEEEEEEE-ETTEEEEEEE
T ss_pred CChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEe--ccceEEEEEEcCCCCeeeeEE
Confidence 23579999999999998887532 335566664 44544333332 345555443 34432 11
Q ss_pred eeecC------------------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC---ceEEEec-C----------
Q 011916 373 NSVDT------------------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM---AKVSTLT-G---------- 420 (475)
Q Consensus 373 ~~~~~------------------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~---~~~~~l~-~---------- 420 (475)
-.+.. ..-++.|.+|.|.++|.++ ....|.|+.||+... +.+.++. +
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs-~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~ 366 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVS-NWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPV 366 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEE-ETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TT
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEE-cccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcc
Confidence 11210 2447999999999999987 678999999999753 3333221 1
Q ss_pred -----CCcceEEEEECCCCCEEEEEe
Q 011916 421 -----HSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 421 -----h~~~V~~l~~spdg~~l~s~s 441 (475)
-.+...-|..|.||+.|+...
T Consensus 367 v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 367 VKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S------S----EEE-TTSSEEEEE-
T ss_pred ccccccCCCCCeEEEccCCeEEEEEe
Confidence 112235678889999887653
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.66 E-value=2.1 Score=43.75 Aligned_cols=273 Identities=16% Similarity=0.089 Sum_probs=150.0
Q ss_pred CCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 163 PSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 163 p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
..+.-|..+.++-+.-++.+-++.+..++.||..+++..++........|..+..+-.|+ |.+|+.+| |.+.+.+..+
T Consensus 159 r~ll~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~~~dk~I~al~~d~qg~-LWVGTdqG-v~~~e~~G~~ 236 (671)
T COG3292 159 RPLLKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASPPLDKAINALIADVQGR-LWVGTDQG-VYLQEAEGWR 236 (671)
T ss_pred cccccCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCCcchhhHHHHHHHhcCc-EEEEeccc-eEEEchhhcc
Confidence 334456677778887777788888888999999999988887644446777776665564 88899887 7777765532
Q ss_pred eeEEec-CCCCceEEEEeCC-CEEEEEeCCCcEEEEECCCCCccEEEecCc--cCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 243 RVRTFG-GHQTRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDYICKLAGH--KSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 243 ~~~~~~-~h~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
...... -....|..+.-|. ..+-.|+.+|..+.---+ .+-.....+.| -+.|.++....+| -|-+++.++.+++
T Consensus 237 ~sn~~~~lp~~~I~ll~qD~qG~lWiGTenGl~r~~l~r-q~Lq~~~~~~~l~~S~vnsL~~D~dG-sLWv~t~~giv~~ 314 (671)
T COG3292 237 ASNWGPMLPSGNILLLVQDAQGELWIGTENGLWRTRLPR-QGLQIPLSKMHLGVSTVNSLWLDTDG-SLWVGTYGGIVRY 314 (671)
T ss_pred ccccCCCCcchheeeeecccCCCEEEeecccceeEecCC-CCccccccccCCccccccceeeccCC-CEeeeccCceEEE
Confidence 222211 1234455555443 566677776655433322 22111111222 2345666655566 4556666666555
Q ss_pred EECCCCceeEEEeccccc-eeEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeE
Q 011916 319 WNQHSQQPTLRLTEHTAA-VKAIAWSP--HQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~-v~~l~~sp--~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l 393 (475)
-+.. ......+....+. +-..+..| .+..+.. ++.-+.+.+-+-.+|..+.... .+..|+.+++...+..-
T Consensus 315 ~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~---~ns~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lW 390 (671)
T COG3292 315 LTAD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQ---LNSIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLW 390 (671)
T ss_pred ecch-hhheeeeecCCCchhhhhccCchhcccceee---ccccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEE
Confidence 4332 1111112111111 11111122 1111111 1123445555566666666542 23556667777755544
Q ss_pred EEEEecCCCeEEEEECCC-CceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 394 VSTHGYSQNQIMVWKYPS-MAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 394 ~~~~g~~dg~I~iwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
+ |+.++-+..|+-.+ +..+.+..+ ..++|..+.=.|+++ |..|+.+|.++
T Consensus 391 l---gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 391 L---GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred E---EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 4 45565677777666 333333333 456788888888888 66788887554
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.63 E-value=1.2 Score=39.62 Aligned_cols=181 Identities=16% Similarity=0.199 Sum_probs=105.8
Q ss_pred ceeEEecCCCCEEEE-Ec--CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQNVLAV-GL--GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV-GTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~~~la~-~~--~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~-g~~dg~v~iwd~~~~~~~~ 245 (475)
|..-+....+.++-. |. ...|++||+.+++......+.. ..+..=-...-|+++.. .-.+|.-.++|..+.+.+.
T Consensus 47 fTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~-~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg 125 (262)
T COG3823 47 FTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP-DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELG 125 (262)
T ss_pred hhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCC-ccccccceeeccceEEEEEeccceeEEEChHHhhhhc
Confidence 334444444544433 43 4689999999998877665542 22222222223444443 3447888999999988887
Q ss_pred EecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCC---ccEEEecCc-cCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 246 TFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS---DYICKLAGH-KSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h-~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
.+. ..+.-+.++.++..|..+....++...|.+.-. .......+. -..+..+.|- ||...|-.=.+..|...|.
T Consensus 126 ~~~-y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p 203 (262)
T COG3823 126 RFS-YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDP 203 (262)
T ss_pred ccc-cCCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcC
Confidence 765 345567788887777777766677776665211 111112111 1123334442 5555555555555666666
Q ss_pred CCCceeEEEe------------ccccceeEEEECCCCCcEEEEe
Q 011916 322 HSQQPTLRLT------------EHTAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 322 ~~~~~~~~~~------------~h~~~v~~l~~sp~~~~ll~sg 353 (475)
.+|+.+..+. .|..-.+.|++.|++..++.+|
T Consensus 204 ~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 204 DSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 6665543321 2455678999999998888876
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=95.49 E-value=1 Score=46.25 Aligned_cols=167 Identities=14% Similarity=0.263 Sum_probs=98.1
Q ss_pred CcEEEEEEcCCCCEEE-EEe--CCCeEEEEECCCCeeeEEecCCCCceEEEEeCC------CEEEEEeCCCcEEEEECCC
Q 011916 210 DSVCSVQWTREGSYIS-VGT--NLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS------RILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 210 ~~V~~v~~spdg~~la-~g~--~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~------~~l~sgs~dg~I~iwd~~~ 280 (475)
.+|..++|. ||+.++ +.- .+|.+++=| .+.+..| ..|..++|.+ ..|++....+.|.+|.+..
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 578899998 665444 332 244444322 2233333 4588899942 3566667788999998863
Q ss_pred CC----ccEEEecCcc-----CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeEEEeccccceeEEEECCCCCcEE
Q 011916 281 SS----DYICKLAGHK-----SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ-PTLRLTEHTAAVKAIAWSPHQSSLL 350 (475)
Q Consensus 281 ~~----~~~~~~~~h~-----~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~-~~~~~~~h~~~v~~l~~sp~~~~ll 350 (475)
.. +.......+- ---.++.|+|....|++-.....-.+++.+... .+..-....+.|.|.+|.+||..|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 22 1111111111 112467899999888887765554555655322 2222224578899999999999988
Q ss_pred EEecCCCCCeEEEEECCCCce-----eeeecCCCCeeEEEE
Q 011916 351 ASGGGTADRCIRFWNTSNGHQ-----LNSVDTGSQVCNLAW 386 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~~~~-----~~~~~~~~~v~~l~~ 386 (475)
++-| ..=.-++||-..... --.++.++.|+++.-
T Consensus 172 VAvG--SsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~A 210 (671)
T PF15390_consen 172 VAVG--SSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEA 210 (671)
T ss_pred EEeC--CeEEEEEecCchhhhhhCCcceeecCCCceEEEEE
Confidence 8765 456678898543321 112344555555543
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.38 E-value=5.3 Score=43.67 Aligned_cols=193 Identities=12% Similarity=0.074 Sum_probs=109.0
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCc-------EEEEEEc----------------CCCCEEEEEeCCCeEEE
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDS-------VCSVQWT----------------REGSYISVGTNLGQVQV 235 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~-------V~~v~~s----------------pdg~~la~g~~dg~v~i 235 (475)
+.++.++.++.|+-.|..+|+..=.++...... ...+.+. ..+..+++++.||.|.-
T Consensus 195 g~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiA 274 (764)
T TIGR03074 195 DTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIA 274 (764)
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEE
Confidence 455666667888888888887655544321100 1122221 13457889999999999
Q ss_pred EECCCCeeeEEecCCCCce----------------EE-EEeCCCEEEEEeC----------CCcEEEEECCCCCccEEEe
Q 011916 236 WDGTQCKRVRTFGGHQTRA----------------GV-LAWNSRILSSGSR----------DRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 236 wd~~~~~~~~~~~~h~~~v----------------~~-l~~~~~~l~sgs~----------dg~I~iwd~~~~~~~~~~~ 288 (475)
.|.++|+.+..+... +.| ++ -...++.+++|+. +|.|+-+|.++ ++.+-.+
T Consensus 275 LDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T-Gkl~W~~ 352 (764)
T TIGR03074 275 LDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT-GALVWAW 352 (764)
T ss_pred EECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC-CcEeeEE
Confidence 999999998776421 111 00 1112456666643 68899999984 4433222
Q ss_pred c-Cc--------cCC--------E-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCceeEEEec
Q 011916 289 A-GH--------KSE--------V-CGLKWSHDDRELASGG------------------NDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 289 ~-~h--------~~~--------V-~~l~~s~~~~~lasg~------------------~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
. +. .+. + ..+++.++..+++.+. ..+.|.-.|.++++....+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 1 10 011 1 2234444444443321 134677788888988776654
Q ss_pred cccc---------eeEEEECC-CCC--cEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 333 HTAA---------VKAIAWSP-HQS--SLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 333 h~~~---------v~~l~~sp-~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
.... ..-+.+.- +|+ .+++.+ +.+|.++++|-++|+.+..+
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~--~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAP--TKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEE--CCCCEEEEEECCCCCEEeec
Confidence 1111 11122222 442 245554 49999999999999987654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.33 E-value=2.5 Score=39.62 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=84.9
Q ss_pred cEEEEEEcCCCCEEEEEe---CCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEE-CCCCCcc
Q 011916 211 SVCSVQWTREGSYISVGT---NLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHD-LRVSSDY 284 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~---~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd-~~~~~~~ 284 (475)
.+.+.+++++|+.+|... ....+.++.. +....... ....+...+|+ +...+....+....++. .......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence 688999999999887766 2234555543 33332221 22266667774 44555555555555553 2212222
Q ss_pred EEEecC--ccCCEEEEEEcCCCCEEEEEe---CCCcEEEEECC---CC------ceeEEEeccccceeEEEECCCCCcEE
Q 011916 285 ICKLAG--HKSEVCGLKWSHDDRELASGG---NDNQLLVWNQH---SQ------QPTLRLTEHTAAVKAIAWSPHQSSLL 350 (475)
Q Consensus 285 ~~~~~~--h~~~V~~l~~s~~~~~lasg~---~Dg~I~iwd~~---~~------~~~~~~~~h~~~v~~l~~sp~~~~ll 350 (475)
...... -...|..+.+||||..+|... .++.|++--+. .+ .+..........+.+++|.+++..++
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V 181 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV 181 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence 222221 112899999999999887765 34677776543 22 11122223356789999999998444
Q ss_pred EEecCCCCCeEEE-EEC
Q 011916 351 ASGGGTADRCIRF-WNT 366 (475)
Q Consensus 351 ~sg~Gs~d~~I~i-wd~ 366 (475)
... ..+..+.. ...
T Consensus 182 ~~~--~~~~~~~~~v~~ 196 (253)
T PF10647_consen 182 LGR--SAGGPVVRLVSV 196 (253)
T ss_pred EeC--CCCCceeEEEEc
Confidence 443 24554443 443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.28 E-value=2.7 Score=39.61 Aligned_cols=180 Identities=12% Similarity=0.146 Sum_probs=117.7
Q ss_pred eeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--
Q 011916 171 LNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT-- 246 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~-- 246 (475)
+..+.|+|+ .++++.....-.||=-.+|+++..+.+..-.....|.|..+|++.++--.++.+.++.+.....+..
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~ 167 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAK 167 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEecc
Confidence 888999997 5788888888888888899999998875555667888988888888888889999888765422211
Q ss_pred -----ec--CC-CCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc--EEEecCc-------cCCEEEEEEcC-CCCE
Q 011916 247 -----FG--GH-QTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY--ICKLAGH-------KSEVCGLKWSH-DDRE 306 (475)
Q Consensus 247 -----~~--~h-~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h-------~~~V~~l~~s~-~~~~ 306 (475)
+. .+ ....-.++|+ .+.|+.+-+-.-+.|+.+...... ......+ -..|.++.|++ .+.+
T Consensus 168 ~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~L 247 (316)
T COG3204 168 VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSL 247 (316)
T ss_pred ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcE
Confidence 11 22 4456789996 367777777777777766522211 1111111 23577888887 5567
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEeccc---------cceeEEEECCCCCcEEE
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLTEHT---------AAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~~h~---------~~v~~l~~sp~~~~ll~ 351 (475)
|+-+.+++.|.-.|.... ++..+.-+. -....|+..++|...++
T Consensus 248 LVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 248 LVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred EEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 777778888888887644 233222111 12356667666664444
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.54 Score=44.12 Aligned_cols=113 Identities=20% Similarity=0.199 Sum_probs=72.8
Q ss_pred ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE-CCCCce
Q 011916 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK-YPSMAK 414 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd-~~~~~~ 414 (475)
.+.+.++++++..+++...+.....++++. .+...........+....|++++...++ ...+....++. ..+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~g~~l~~PS~d~~g~~W~v--~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLTGGSLTRPSWDPDGWVWTV--DDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeeccCCccccccccCCCCEEEE--EcCCCceEEEEecCCCcc
Confidence 688999999999887775211344555554 4444444435568889999999777776 44555555553 333322
Q ss_pred -EEEecC--CCcceEEEEECCCCCEEEEEe---CCCCEEEEecC
Q 011916 415 -VSTLTG--HSLRVLYLATSPDGQTIVTGA---GDETLRFWNVF 452 (475)
Q Consensus 415 -~~~l~~--h~~~V~~l~~spdg~~l~s~s---~Dg~I~iW~~~ 452 (475)
...+.. -...|..+.+||||..++... .++.|.+=-+.
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 112221 122899999999999887665 45778877665
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=1.2 Score=46.05 Aligned_cols=130 Identities=12% Similarity=0.040 Sum_probs=70.6
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeE--EecCCCCceEEEEeCCCEE
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL--GQVQVWDGTQCKRVR--TFGGHQTRAGVLAWNSRIL 264 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d--g~v~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l 264 (475)
.+..||..+++......+.....-.+++ .-+|...++|+.+ ..+..||..+++-.. .+............++.+.
T Consensus 288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IY 366 (480)
T PHA02790 288 NAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIY 366 (480)
T ss_pred eEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEE
Confidence 5888999888766655443222112222 2367777888764 357888876553322 2222222334455688888
Q ss_pred EEEeCCC---cEEEEECCCCCccEEE--ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 265 SSGSRDR---NILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 265 ~sgs~dg---~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
+.|+.++ .+..||.+.. ..... +.........+. -++...+.|+ .+.+||.++.+
T Consensus 367 viGG~~~~~~~ve~ydp~~~-~W~~~~~m~~~r~~~~~~~--~~~~IYv~GG---~~e~ydp~~~~ 426 (480)
T PHA02790 367 VIGGHSETDTTTEYLLPNHD-QWQFGPSTYYPHYKSCALV--FGRRLFLVGR---NAEFYCESSNT 426 (480)
T ss_pred EecCcCCCCccEEEEeCCCC-EEEeCCCCCCccccceEEE--ECCEEEEECC---ceEEecCCCCc
Confidence 8888654 4667887632 22111 111111122222 2565666664 57788887654
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.29 Score=49.05 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=95.3
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC-------CCEEEEEeCCCcEEEEECCCCCccEEEecCc
Q 011916 220 EGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-------SRILSSGSRDRNILQHDLRVSSDYICKLAGH 291 (475)
Q Consensus 220 dg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h 291 (475)
+..+|. .|.....++--|++.|+.+..+..|...|...... ...-++|-.+..|.-.|.+..+..+.... .
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-s 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-S 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-e
Confidence 444444 34455667778899999999998877664333221 23345566667777778776664333222 2
Q ss_pred cCCEEEEEEcC----CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC
Q 011916 292 KSEVCGLKWSH----DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 292 ~~~V~~l~~s~----~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~ 367 (475)
...++.-.|+. ...++|.|+..|.|++||--.-+....+.+...+|..|..+.+|++++++| ...|-+-|+.
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC----k~yllL~d~~ 632 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC----KNYLLLTDVP 632 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee----cceEEEEecc
Confidence 22233333332 345999999999999999655444445566778899999999999999986 5777777764
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.13 E-value=1.7 Score=39.43 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=83.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC--------CceEEEEeCC---CEEEEEeCCCcEEEEEC
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ--------TRAGVLAWNS---RILSSGSRDRNILQHDL 278 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~--------~~v~~l~~~~---~~l~sgs~dg~I~iwd~ 278 (475)
.....-..+|+|++ ..|...-.--++....+.+..-+.+|. .--..++|+. .+.++-+.+-+|.-||.
T Consensus 109 nR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dy 187 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDY 187 (310)
T ss_pred cccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeec
Confidence 45566678899998 455442111122222233333333333 2335678853 45566677888888885
Q ss_pred CCCC------ccEEEecC----ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCC
Q 011916 279 RVSS------DYICKLAG----HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH 345 (475)
Q Consensus 279 ~~~~------~~~~~~~~----h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~ 345 (475)
.... +.+..++. ....--+++...+|++.++.-+.++|...|..+++.+..+.-....|++.+|--.
T Consensus 188 d~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 188 DCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 4322 12222222 1122334556678888888888899999999999999999888899999999644
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.027 Score=59.58 Aligned_cols=153 Identities=16% Similarity=0.208 Sum_probs=87.8
Q ss_pred CCeEEEEECC--CCcEEEEeeC----CCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEE
Q 011916 187 GTCVYLWTAS--NSKVTRLCDL----GPGDSVCSVQWTR---EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVL 257 (475)
Q Consensus 187 ~~~V~lw~~~--~~~~~~~~~~----~~~~~V~~v~~sp---dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l 257 (475)
-|.+.+|+++ .|++...+.+ .-...+.-|.|.| +.-++.++-.+|.|++....+... ..+.+|..++..+
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~ 230 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDM 230 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccH
Confidence 3677888775 3443222211 2344556667766 667888888889998877655433 4455688888777
Q ss_pred EeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-----CCceeEEEe
Q 011916 258 AWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH-----SQQPTLRLT 331 (475)
Q Consensus 258 ~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~-----~~~~~~~~~ 331 (475)
++- ..++...+ .||||..+|.+..||.++.|.+. ..++++..+
T Consensus 231 a~~~~g~~~l~~-------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewk 279 (1283)
T KOG1916|consen 231 AFFAEGVLKLAS-------------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWK 279 (1283)
T ss_pred HHHhhchhhhee-------------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccC
Confidence 761 11111110 67888888888888877766543 333445555
Q ss_pred ccccc-eeEEEECCC-------CCc-EEEEecCCCCCeEEEEECCCCcee
Q 011916 332 EHTAA-VKAIAWSPH-------QSS-LLASGGGTADRCIRFWNTSNGHQL 372 (475)
Q Consensus 332 ~h~~~-v~~l~~sp~-------~~~-ll~sg~Gs~d~~I~iwd~~~~~~~ 372 (475)
.|.+. -.|.-++.+ +.+ ++.++ ....+.+++|.....+|+
T Consensus 280 phd~~p~vC~lc~~~~~~~v~i~~w~~~Itt-td~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 280 PHDKHPRVCWLCHKQEILVVSIGKWVLRITT-TDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCCCCceeeeeccccccCCccceeEEEEec-ccCCcceeEeeccchhhh
Confidence 55522 222222211 111 22222 235678999988877776
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.9 Score=45.56 Aligned_cols=175 Identities=17% Similarity=0.186 Sum_probs=95.3
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeC---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDL---GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~---~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.+..+.|+.+ .++++..+|.|++|+......... .. .....|..+.+..+| +++-..+|.|.+-+-......+
T Consensus 85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~G--Vavlt~~g~v~~i~~~~~~~~~ 161 (829)
T KOG2280|consen 85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHNG--VAVLTVSGQVILINGVEEPKLR 161 (829)
T ss_pred CeeeecccCCceEEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecCc--eEEEecCCcEEEEcCCCcchhh
Confidence 5667999987 799999999999999876544331 11 122345555555555 4444555666555433222333
Q ss_pred EecC-CCCceEEEEe---CC----CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 246 TFGG-HQTRAGVLAW---NS----RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 246 ~~~~-h~~~v~~l~~---~~----~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
.+.. ......+-+| .+ ..++-....--..++-..........+..-.+.+..+..||+.++||-=..+|.|.
T Consensus 162 ~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~ 241 (829)
T KOG2280|consen 162 KMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIW 241 (829)
T ss_pred hCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEE
Confidence 3332 1111122333 11 12211110000111111111111222222235688899999999999999999999
Q ss_pred EEECCCCceeEEEec-cccceeEEEECCCCC
Q 011916 318 VWNQHSQQPTLRLTE-HTAAVKAIAWSPHQS 347 (475)
Q Consensus 318 iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~ 347 (475)
+-+....+....+.. .......++|+.+..
T Consensus 242 ~vs~D~~~~lce~~~~~~~~p~qm~Wcgnda 272 (829)
T KOG2280|consen 242 VVSIDLSQILCEFNCTDHDPPKQMAWCGNDA 272 (829)
T ss_pred EEecchhhhhhccCCCCCCchHhceeecCCc
Confidence 998887776666552 223334788876653
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.67 E-value=2 Score=42.80 Aligned_cols=143 Identities=11% Similarity=0.127 Sum_probs=81.3
Q ss_pred CCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEECCC--Cc--eeEEEeccccceeEEEECCCCCcEEEEecCC
Q 011916 293 SEVCGLKWSHDDRELASGG-----------NDN-QLLVWNQHS--QQ--PTLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~-----------~Dg-~I~iwd~~~--~~--~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
.....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+...-.....|++.+++ |+++.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~--- 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT--- 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC---
Confidence 3466789999998777643 223 677776543 22 223444444456889999888 55543
Q ss_pred CCCeEEEE-ECCCC-----c--ee-eeecC-----CCCeeEEEEcCCCCeEEEEEecC------------------CCeE
Q 011916 357 ADRCIRFW-NTSNG-----H--QL-NSVDT-----GSQVCNLAWSKNVNELVSTHGYS------------------QNQI 404 (475)
Q Consensus 357 ~d~~I~iw-d~~~~-----~--~~-~~~~~-----~~~v~~l~~s~~~~~l~~~~g~~------------------dg~I 404 (475)
...|..| |.... + .+ ..+.. ......+.|.|+|...++. |.. .+.|
T Consensus 89 -~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~-G~~~~~~~~~~~~~~~~~~~~~g~i 166 (367)
T TIGR02604 89 -PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNH-GNTLASKVTRPGTSDESRQGLGGGL 166 (367)
T ss_pred -CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEec-ccCCCceeccCCCccCcccccCceE
Confidence 3345444 54321 1 11 11222 2447789999999766654 421 1345
Q ss_pred EEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 405 MVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 405 ~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
.-++....+....-.++ .....++|+++|+++++-..+
T Consensus 167 ~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 167 FRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEEecCCCeEEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 55555444322222232 335789999999988765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.65 E-value=1.6 Score=49.01 Aligned_cols=231 Identities=12% Similarity=0.096 Sum_probs=104.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCC-ceEEEEe--CCCEEEEEeCCCcEEEEECCCCCc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT-RAGVLAW--NSRILSSGSRDRNILQHDLRVSSD 283 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~ 283 (475)
+.......++|+|.-.++|+|+..|.|+++-...-+.......... .+..+.+ ..........+..+.+|.......
T Consensus 33 G~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~ 112 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG 112 (993)
T ss_pred CCCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce
Confidence 3344566788999999999999999999997554333322221111 1111111 122233334445556665542111
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEecccccee-EEEECCCCCcEEEEecCCCCCeE
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL-RLTEHTAAVK-AIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~-~~~~h~~~v~-~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
..+.+.+.+..--+--.+ +-| ..+.+++||..-..... .+..-..... -..+.+. ++..-.-..+-.-
T Consensus 113 -----~~~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~~~~~~~~~~ 182 (993)
T KOG1983|consen 113 -----VFLKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSP---TLSIEGLVIDLDT 182 (993)
T ss_pred -----eecCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeecc---ceeeecccccccc
Confidence 112333444333222223 444 77888888865321110 1111000000 0000000 0000000001111
Q ss_pred EEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 362 RFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
.+|-+.... .....+...+.+..+....+.++ ++..+.+.+|+.........+ .+....++.++..++++.
T Consensus 183 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~h 253 (993)
T KOG1983|consen 183 VLISLPDAY-LGLSLIEYESLQVLYYSPTKILI---GFNRGLVVIKDRASKYVQSAY-----LPNGQLESRDGSHFVSYH 253 (993)
T ss_pred ceeeccccc-ccccccccccceeeeecCCCcce---eeeeeeeeehhcccccchhhc-----ccccccCccCCceEEEEE
Confidence 111111111 11111233344444444444443 234556666664433222222 222222388999999999
Q ss_pred CCCCEEEEecCCCCC
Q 011916 442 GDETLRFWNVFPSLK 456 (475)
Q Consensus 442 ~Dg~I~iW~~~~~~~ 456 (475)
.||.+.+||+..+..
T Consensus 254 ~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 254 TDGSYAFWDVSSGKL 268 (993)
T ss_pred ecCCEEeeecCCCce
Confidence 999999999998754
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=6.2 Score=39.61 Aligned_cols=145 Identities=12% Similarity=0.162 Sum_probs=82.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc----
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH---- 370 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~---- 370 (475)
...+..++++.+++.+..-..++-||--...-...-......+.++.|.+++..+++. ..|.+. +....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g----~~G~l~-~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT----RGGGLY-VSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe----CCceEE-EecCCCCcccc
Confidence 4455667888777776654333344432211011112335568899999998855553 456544 3444443
Q ss_pred -eeeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe---cCCCcceEEEEECCCCCEEEEEeCC
Q 011916 371 -QLNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL---TGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 371 -~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l---~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
....... ...+..+.|.+++..+++ | ..|.+.... ..++.-... ..-....+.+.|.++++-+++| .+
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~--G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~ 390 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAA--G-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-ND 390 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEE--E-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CC
Confidence 2333322 235888999988887776 5 567665553 333332222 2234567899998877766655 67
Q ss_pred CCEEEE
Q 011916 444 ETLRFW 449 (475)
Q Consensus 444 g~I~iW 449 (475)
|.|.-|
T Consensus 391 G~il~~ 396 (398)
T PLN00033 391 GVLLRY 396 (398)
T ss_pred cEEEEe
Confidence 776554
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=2.2 Score=44.20 Aligned_cols=182 Identities=11% Similarity=0.070 Sum_probs=80.3
Q ss_pred eCCCEEEEEeCCC-----cEEEEECCCCCccEE--EecCccCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeE-
Q 011916 259 WNSRILSSGSRDR-----NILQHDLRVSSDYIC--KLAGHKSEVCGLKWSHDDRELASGGND--NQLLVWNQHSQQPTL- 328 (475)
Q Consensus 259 ~~~~~l~sgs~dg-----~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~~~~~lasg~~D--g~I~iwd~~~~~~~~- 328 (475)
.++.+++.|+.++ .+..||... ..... .+.........+. -++...+.||.+ ..+..||..+.+-..
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~-~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYIS-NNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCC-CEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 3455566666543 456677663 22111 1111111122222 367777788754 357888876543221
Q ss_pred -EEeccccceeEEEECCCCCcEEEEecCCC-CCeEEEEECCCCceeeeecCCCCeeE-EEEcCCCCeEEEEEecCCCeEE
Q 011916 329 -RLTEHTAAVKAIAWSPHQSSLLASGGGTA-DRCIRFWNTSNGHQLNSVDTGSQVCN-LAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 329 -~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~-d~~I~iwd~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
.+.........++. +| .|++.||... ...+..||..+.+=...-....+... .+..-++ .|++. | |.+.
T Consensus 347 ~~l~~~r~~~~~~~~--~g-~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~-~IYv~-G---G~~e 418 (480)
T PHA02790 347 PSLLKPRCNPAVASI--NN-VIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR-RLFLV-G---RNAE 418 (480)
T ss_pred CCCCCCCcccEEEEE--CC-EEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECC-EEEEE-C---CceE
Confidence 11111111112222 33 4777775211 24577788765432221111111111 1112233 44443 4 4577
Q ss_pred EEECCCCceE--EEecCCCcceEEEEECCCCCEEEEEeCCC-----CEEEEecCC
Q 011916 406 VWKYPSMAKV--STLTGHSLRVLYLATSPDGQTIVTGAGDE-----TLRFWNVFP 453 (475)
Q Consensus 406 iwd~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~s~s~Dg-----~I~iW~~~~ 453 (475)
+||..+.+-. ..+.........+. -+|+..+.||.++ ++..||...
T Consensus 419 ~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 419 FYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred EecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCC
Confidence 8888765433 22221111222222 3677777777542 355555543
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.0067 Score=59.94 Aligned_cols=147 Identities=20% Similarity=0.313 Sum_probs=103.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee
Q 011916 294 EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN 373 (475)
Q Consensus 294 ~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~ 373 (475)
......|-+.+.-++.++.+..|..||-.... .... ...+...+++|.-++..+++... ..+.+.+||+.+.....
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~-n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~eytqq 111 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILEL-NPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEYTQQ 111 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhcce-eccc-CCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhhHHH
Confidence 34456788877779999988899999965432 2222 23455678899888887776654 78999999987543211
Q ss_pred -eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 374 -SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 374 -~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
.......-.-+.|++.+.+++. |...|.+.|++..+...+...-.|..++++++|.+.+. .+.++.|..+.
T Consensus 112 LE~gg~~s~sll~wsKg~~el~i--g~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~L~ 183 (615)
T KOG2247|consen 112 LESGGTSSKSLLAWSKGTPELVI--GNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY-VILCDCDNTLS 183 (615)
T ss_pred HhccCcchHHHHhhccCCccccc--cccccceEEEeccchhhhhhhcccccceeEEEecccce-eeecCcHHHHH
Confidence 1122223333889999999999 88899999999887776655545999999999998874 44455554443
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.82 E-value=2.7 Score=44.86 Aligned_cols=152 Identities=13% Similarity=0.162 Sum_probs=95.6
Q ss_pred CceeEEecCCCCEEEEEcCCeEEEEECCCCcEEE------EeeC---------------CCCCcEEEEEEcC--CCCEEE
Q 011916 169 FYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTR------LCDL---------------GPGDSVCSVQWTR--EGSYIS 225 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~------~~~~---------------~~~~~V~~v~~sp--dg~~la 225 (475)
|.-|..+-+..+++.++.++.|+||+...-.... .+.. .....|..+.... +...|+
T Consensus 39 fKNNLtalsq~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl 118 (717)
T PF08728_consen 39 FKNNLTALSQRNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLL 118 (717)
T ss_pred cccceeEEecCCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEE
Confidence 5556566665778888899999999986533211 0000 0112355554433 557899
Q ss_pred EEeCCCeEEEEECCC-------C----e---------eeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCC
Q 011916 226 VGTNLGQVQVWDGTQ-------C----K---------RVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVS 281 (475)
Q Consensus 226 ~g~~dg~v~iwd~~~-------~----~---------~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~ 281 (475)
++..||.|.+|.+++ . + +--.+ .-...++.+++. .++||+++....|.|+-....
T Consensus 119 ~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~ 197 (717)
T PF08728_consen 119 LCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALV 197 (717)
T ss_pred EEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEEEEecc
Confidence 999999999997532 1 0 00011 123467788875 478888888888888866532
Q ss_pred C--ccEEEecCccCCEEEEEEcCCC---C---EEEEEeCCCcEEEEEC
Q 011916 282 S--DYICKLAGHKSEVCGLKWSHDD---R---ELASGGNDNQLLVWNQ 321 (475)
Q Consensus 282 ~--~~~~~~~~h~~~V~~l~~s~~~---~---~lasg~~Dg~I~iwd~ 321 (475)
. .....-..|...|-+|+|-++. . ++++++-.|.+.+|++
T Consensus 198 ~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 198 DERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1 1111122356678889987633 2 7888899999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.4 Score=43.73 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=83.8
Q ss_pred CEEEEEcCCeEEEEECC--CCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE----EecCCCCc
Q 011916 180 NVLAVGLGTCVYLWTAS--NSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR----TFGGHQTR 253 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~--~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~----~~~~h~~~ 253 (475)
+.+.+...|.+.=|-.. +..+.-.++....++|.++.|++|.+.||+--.+.+|.+++....+... +.+..+..
T Consensus 35 kqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~ 114 (657)
T KOG2377|consen 35 KQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNAN 114 (657)
T ss_pred ceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcce
Confidence 34444334444444433 2344444444567799999999999999999999999999974333222 22334556
Q ss_pred eEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEE
Q 011916 254 AGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELA 308 (475)
Q Consensus 254 v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~la 308 (475)
|..+.|. ..-++.....| +-+|-+......++..+.|+-.|.-..|.++.+.++
T Consensus 115 IlGF~W~~s~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 115 ILGFCWTSSTEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred eEEEEEecCeeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 8889994 45555555444 556666545556666777888899999999877443
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.69 E-value=8.1 Score=38.40 Aligned_cols=195 Identities=12% Similarity=0.074 Sum_probs=102.3
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCC-ce-
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT-RA- 254 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~-~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~-~v- 254 (475)
.+.+++...+|.|+-.|.+++..+-...... ...+.+-.+..+|+ |++++.+|.+..+|..+++.+........ .+
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Confidence 3456666677788888888777542211111 11222222233666 88889999999999989999888776551 11
Q ss_pred EEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCc---cCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEE
Q 011916 255 GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGH---KSEVCGLKWSHDDRELASGGN--DNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 255 ~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h---~~~V~~l~~s~~~~~lasg~~--Dg~I~iwd~~~~~~~~~ 329 (475)
.........+..++.++.+...|..+. ...-....- ...+..-....++ .+..+.. ++.+.-.|..++.....
T Consensus 147 ~~~v~~~~~v~~~s~~g~~~al~~~tG-~~~W~~~~~~~~~~~~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 147 SPPVVGDGTVYVGTDDGHLYALNADTG-TLKWTYETPAPLSLSIYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEEcCcEEEEecCCCeEEEEEccCC-cEEEEEecCCccccccccCceeecc-eEEEecCCCcceEEEEEccCCcEeee
Confidence 111112344444446777777776632 222111110 1111111111233 4444444 56777788888877665
Q ss_pred Eecc----ccceeEEEECCCC-----CcEEEEecCCCCCeEEEEECCCCceeeeecCC
Q 011916 330 LTEH----TAAVKAIAWSPHQ-----SSLLASGGGTADRCIRFWNTSNGHQLNSVDTG 378 (475)
Q Consensus 330 ~~~h----~~~v~~l~~sp~~-----~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~ 378 (475)
...+ ...+........+ ..++. +..++.+...|..+++.+..+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~---~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 225 QKVSQTIGRTAISTTPAVDGGPVYVDGGVYA---GSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeecccCcccccccccccCceEEECCcEEE---EecCCeEEEEEcCCCceEEEEecc
Confidence 3211 1111001111111 11222 225788999999999999888664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.67 E-value=3.3 Score=43.79 Aligned_cols=181 Identities=11% Similarity=0.074 Sum_probs=93.1
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEe--cCccCCEEEEEEcCCCCEE
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKL--AGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~~~~~l 307 (475)
-.|+||+.. |+.+..+.-..+.+..+.|+ ...|++...+|++++|++-......... ......|..+.+..+|-.+
T Consensus 64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVav 142 (829)
T KOG2280|consen 64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVAV 142 (829)
T ss_pred eeEEEEecc-ccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceEE
Confidence 357888854 55554444334488899996 5889999999999999986322111111 2223345555555565333
Q ss_pred EEEeCCCcEEEEECCCCceeEEEec-cccceeEEEE--CCCCC--c-EEEEecCCCCCeEEEEEC--CCCceeeeecCCC
Q 011916 308 ASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVKAIAW--SPHQS--S-LLASGGGTADRCIRFWNT--SNGHQLNSVDTGS 379 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~--sp~~~--~-ll~sg~Gs~d~~I~iwd~--~~~~~~~~~~~~~ 379 (475)
.+ .+|.+.+-.-.....+.++.. .......-+| .+++. . ++...- ..+ ..++.. .+.+........+
T Consensus 143 lt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~--~v~-~~~~q~~~~~~q~~~~~~~~~ 217 (829)
T KOG2280|consen 143 LT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV--AVG-LHICQVEESRVQLHALSWPNS 217 (829)
T ss_pred Ee--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeech--hhh-hcccceecccccccccCCCCc
Confidence 33 344444433222111222221 0011111222 12211 1 111100 000 011111 1122222122347
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
.+..+..||+.++|+. -...|.|.+-+....+.+.++.
T Consensus 218 ~~~ki~VS~n~~~laL--yt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 218 SVVKISVSPNRRFLAL--YTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred eEEEEEEcCCcceEEE--EecCCcEEEEecchhhhhhccC
Confidence 7888999999999998 5578999998887777766665
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=7.2 Score=38.91 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=18.5
Q ss_pred EEEEECCCCce--EEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 404 IMVWKYPSMAK--VSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 404 I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
+.+||..+.+. +..+. ..+-...+..-++++++.|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp--~~r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELP--QGLAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCC--CCccceEEEEeCCEEEEEcCCC
Confidence 45788766543 22221 1111222333467777777753
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=93.61 E-value=7.3 Score=37.59 Aligned_cols=227 Identities=14% Similarity=0.039 Sum_probs=120.7
Q ss_pred CEEEEEcCCeEEEEECCC--CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee-------------
Q 011916 180 NVLAVGLGTCVYLWTASN--SKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKR------------- 243 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~--~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~------------- 243 (475)
..+..|.+..+++.+... ++..+++ +...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl~---~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKLI---GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEec---CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 467788888888888765 4455554 467899999988777665544 344599999732221
Q ss_pred --eEEecCCCCceEEEEe-CC--CEEEEEeCCCcEEEEECCCCCccEEEec-------CccCCEEEEEEcC--CCCEEEE
Q 011916 244 --VRTFGGHQTRAGVLAW-NS--RILSSGSRDRNILQHDLRVSSDYICKLA-------GHKSEVCGLKWSH--DDRELAS 309 (475)
Q Consensus 244 --~~~~~~h~~~v~~l~~-~~--~~l~sgs~dg~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~s~--~~~~las 309 (475)
....-+|......+.. .+ ..++++....+|.++...........+. .-...+..+..++ ....+..
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 0111133333333333 22 2444555566777765432211111111 1112333333333 2457777
Q ss_pred EeCCCcEEEEECCC--CceeE---E--Eeccc-cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce--eeeecCCC
Q 011916 310 GGNDNQLLVWNQHS--QQPTL---R--LTEHT-AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ--LNSVDTGS 379 (475)
Q Consensus 310 g~~Dg~I~iwd~~~--~~~~~---~--~~~h~-~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~--~~~~~~~~ 379 (475)
|+..+-..++++.. ..... . ..... .++ ++.--+++..+++ .|....+.|...... ...+.-..
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~-~i~~l~~~e~Llc-----~~~~~v~Vn~~G~~~~r~~~l~w~~ 244 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPI-SVVQVPRDEFLLC-----YDEFGVFVNLYGKRRSRNPILHWEF 244 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCce-EEEEECCCeEEEE-----ECcEEEEEeCCCCccccceEEEcCC
Confidence 76643344444432 11000 0 00111 233 3333444554444 577777778654122 22344556
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG 420 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~ 420 (475)
...++++. ..+|++. .++.|.|+++.+++.+.++..
T Consensus 245 ~p~~~~~~--~pyll~~---~~~~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 245 MPESFAYH--SPYLLAF---HDNGIEIRSIKTGELLQELAD 280 (302)
T ss_pred cccEEEEE--CCEEEEE---cCCcEEEEECCCCceEEEEec
Confidence 66777776 3666653 467799999999998888863
|
Unpublished observations. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.29 Score=43.01 Aligned_cols=70 Identities=23% Similarity=0.405 Sum_probs=46.6
Q ss_pred ceeEEecCCCCEEEEEcCCeEEEEECCCCc-----------------------EE--EEe------eC---C------CC
Q 011916 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSK-----------------------VT--RLC------DL---G------PG 209 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~~V~lw~~~~~~-----------------------~~--~~~------~~---~------~~ 209 (475)
+.++++||.|+.||+..+..|+|.+..+.. .. ..+ .. . ..
T Consensus 6 ~~~~l~WS~Dg~laV~t~~~v~IL~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~s~ 85 (173)
T PF12657_consen 6 CPNALAWSEDGQLAVATGESVHILDPQTPNSLSKSFIPRPLTLPPSSIQWPITSIRRNLFTSSEWPTESPRSMDDEEISS 85 (173)
T ss_pred CCcCeeECCCCCEEEEcCCeEEEEeccCCcccccccccCCcccccccCCCccceEecCccccccCceecccccccccccc
Confidence 457899999999999999999999333211 00 000 00 0 01
Q ss_pred CcEEEEEEcCCC------CEEEEEeCCCeEEEEECC
Q 011916 210 DSVCSVQWTREG------SYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 210 ~~V~~v~~spdg------~~la~g~~dg~v~iwd~~ 239 (475)
..|.+++|||.| .+||+-+.+|.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 267788888843 477888888888888754
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=93.55 E-value=7.8 Score=37.70 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=52.7
Q ss_pred EEEEeCCCEEEEEeCCC-----cEEEEECCCCCcc--EEEecCccCCE--EEEEEcCCCCEEEEEeC-----CCcEEEEE
Q 011916 255 GVLAWNSRILSSGSRDR-----NILQHDLRVSSDY--ICKLAGHKSEV--CGLKWSHDDRELASGGN-----DNQLLVWN 320 (475)
Q Consensus 255 ~~l~~~~~~l~sgs~dg-----~I~iwd~~~~~~~--~~~~~~h~~~V--~~l~~s~~~~~lasg~~-----Dg~I~iwd 320 (475)
..++.++.+++.|+.++ .+..+|+...... ...+..-.... .+++. -++++.+.|+. ...+..||
T Consensus 67 ~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd 145 (323)
T TIGR03548 67 ASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFN 145 (323)
T ss_pred EEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEc
Confidence 34455777778887653 4666777633211 11111111111 11222 25667777764 24688889
Q ss_pred CCCCceeE--EEeccccceeEEEECCCCCcEEEEecCCCCC----eEEEEECCCCc
Q 011916 321 QHSQQPTL--RLTEHTAAVKAIAWSPHQSSLLASGGGTADR----CIRFWNTSNGH 370 (475)
Q Consensus 321 ~~~~~~~~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~----~I~iwd~~~~~ 370 (475)
+.+.+-.. .+.. .......+..-++ .|++.|| .++ .+..||..+.+
T Consensus 146 ~~~~~W~~~~~~p~-~~r~~~~~~~~~~-~iYv~GG--~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 146 LETQEWFELPDFPG-EPRVQPVCVKLQN-ELYVFGG--GSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CCCCCeeECCCCCC-CCCCcceEEEECC-EEEEEcC--CCCccccceEEEecCCCe
Confidence 87654322 1111 1111112222233 4777775 332 35688887654
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.51 E-value=8.2 Score=37.85 Aligned_cols=228 Identities=11% Similarity=0.073 Sum_probs=113.8
Q ss_pred CCceeEEecCCCCEEEEEcCCeEEEEECCCCc-EEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSK-VTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~-~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
++.++.+.+.++..++++..+.|+.- .+.++ ....... ...+....+.....+..+++ +..|.|..=+ +.++.-.
T Consensus 89 ~~~l~~v~~~~~~~~~~G~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~-g~~G~i~~S~-DgG~tW~ 165 (334)
T PRK13684 89 NFRLISISFKGDEGWIVGQPSLLLHT-TDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMA-TNVGAIYRTT-DGGKNWE 165 (334)
T ss_pred ccceeeeEEcCCcEEEeCCCceEEEE-CCCCCCCeEccCCcCCCCCceEEEEECCCcceee-eccceEEEEC-CCCCCce
Confidence 34566677776666677766665543 22232 2222110 01112222222223333333 3445443322 2222222
Q ss_pred Eec-CCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 246 TFG-GHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 246 ~~~-~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
.+. .-...+..+.+. +..++..+..|.+..- .+..+. .......-...+.++.+.++++.+++| ..|.+++=...
T Consensus 166 ~~~~~~~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 166 ALVEDAAGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred eCcCCCcceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 221 224466777774 3445555556655432 111222 223333445678999999998877765 45766542233
Q ss_pred CCceeEEEec----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----CCCCeeEEEEcCCCCeEE
Q 011916 323 SQQPTLRLTE----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD----TGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 323 ~~~~~~~~~~----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~ 394 (475)
.+..-..... ....+.++.+.+++. +++++ .+|.|. .....|+.-.... .......+.|..+++.++
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G---~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGE-IWAGG---GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV 318 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCC-EEEEc---CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE
Confidence 3322111111 123578899999776 55554 466555 3444454443332 223577888887777777
Q ss_pred EEEecCCCeEEEEE
Q 011916 395 STHGYSQNQIMVWK 408 (475)
Q Consensus 395 ~~~g~~dg~I~iwd 408 (475)
+ | ..|.|..|+
T Consensus 319 ~--G-~~G~il~~~ 329 (334)
T PRK13684 319 L--G-QRGVLLRYV 329 (334)
T ss_pred E--C-CCceEEEec
Confidence 6 5 577777665
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.50 E-value=9.9 Score=38.75 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=61.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEe
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 288 (475)
-.|..|..++.|..++..+.+|.+.++-......-..++.....|+|-.+. +..|++.+
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss-------------------- 163 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSS-------------------- 163 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccC--------------------
Confidence 357788889999999999999977665433333333444444444444332 22222211
Q ss_pred cCccCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 289 AGHKSEVCGLKWSHDD---RELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~~---~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
..-.+...+|+|+. ..|..-.+|+.|++||+.....++..
T Consensus 164 --~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq 206 (741)
T KOG4460|consen 164 --TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ 206 (741)
T ss_pred --CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence 11235567788854 57777788999999999877665443
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=93.46 E-value=8.4 Score=37.84 Aligned_cols=25 Identities=12% Similarity=0.197 Sum_probs=16.1
Q ss_pred EEEEeCCCEEEEEeCC-----------CcEEEEECC
Q 011916 255 GVLAWNSRILSSGSRD-----------RNILQHDLR 279 (475)
Q Consensus 255 ~~l~~~~~~l~sgs~d-----------g~I~iwd~~ 279 (475)
..+..++.+.+.|+.+ ..+..||..
T Consensus 58 ~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~ 93 (346)
T TIGR03547 58 VAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPK 93 (346)
T ss_pred eEEEECCEEEEEeCCCCCCCCCcceecccEEEEECC
Confidence 3445577777888753 246677876
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=93.37 E-value=2 Score=46.49 Aligned_cols=71 Identities=20% Similarity=0.320 Sum_probs=46.1
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----------Ccee---EEE--------eccccceeEEEECCCC---Cc
Q 011916 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHS----------QQPT---LRL--------TEHTAAVKAIAWSPHQ---SS 348 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~----------~~~~---~~~--------~~h~~~v~~l~~sp~~---~~ 348 (475)
-+|..|.++++|.+||..|..|. .|-.+.. ++.. ..+ ..+...|..+.|+|.+ ..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 46899999999999999998664 4433321 1110 010 1234577888888874 55
Q ss_pred EEEEecCCCCCeEEEEECC
Q 011916 349 LLASGGGTADRCIRFWNTS 367 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~ 367 (475)
|++-. .|++|++||+.
T Consensus 164 l~vLt---sdn~lR~y~~~ 179 (717)
T PF10168_consen 164 LVVLT---SDNTLRLYDIS 179 (717)
T ss_pred EEEEe---cCCEEEEEecC
Confidence 65543 58888888874
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.32 E-value=7.6 Score=36.93 Aligned_cols=216 Identities=15% Similarity=0.167 Sum_probs=124.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECC-------CCeeeEEecC-----CCCceEEEEeCC--------------CEE
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGT-------QCKRVRTFGG-----HQTRAGVLAWNS--------------RIL 264 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~-------~~~~~~~~~~-----h~~~v~~l~~~~--------------~~l 264 (475)
.-+.|+++|.+.+-++....+...+||.. ...++.++.. .....+.+.||+ ..+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45689999999877777778899999986 1223333331 223566676642 246
Q ss_pred EEEeCCCcEEEEECCCCCc----cEEEec-CccCCE-EEEEEcC--CCCEEEEEe-CCCcEEEEECCCCceeE--EEec-
Q 011916 265 SSGSRDRNILQHDLRVSSD----YICKLA-GHKSEV-CGLKWSH--DDRELASGG-NDNQLLVWNQHSQQPTL--RLTE- 332 (475)
Q Consensus 265 ~sgs~dg~I~iwd~~~~~~----~~~~~~-~h~~~V-~~l~~s~--~~~~lasg~-~Dg~I~iwd~~~~~~~~--~~~~- 332 (475)
+.+++||+|.-|....... ....+. ...+.| ..+++.. .+.+|..+. ..++|.|+|-.-.+... .+..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 7889999999998643222 112222 112223 3455543 244555443 46788888754322110 0110
Q ss_pred ---------------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC---CeeEEEEcC------
Q 011916 333 ---------------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS---QVCNLAWSK------ 388 (475)
Q Consensus 333 ---------------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~---~v~~l~~s~------ 388 (475)
..-.|+-..-.++++.=++ |.--|.|-+||+ .|+.++.+..+. ..+.++..|
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~---G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA---GAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCccccccc---CCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 0001111111222221111 224578999996 578888776554 345566654
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc------ceEEEEECC
Q 011916 389 NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL------RVLYLATSP 432 (475)
Q Consensus 389 ~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~------~V~~l~~sp 432 (475)
.+..|+- ...||+|..||..+++.+..+....+ .++.|+|..
T Consensus 260 sg~lLVG--NFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 260 SGALLVG--NFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCCeEEe--ecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 4566665 67799999999999998888876433 357777765
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=93.26 E-value=9.8 Score=40.35 Aligned_cols=163 Identities=13% Similarity=0.121 Sum_probs=89.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEec-CCCC------ceEEEEe-C-CCEEEEEeC-CC---
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--RTFG-GHQT------RAGVLAW-N-SRILSSGSR-DR--- 271 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--~~~~-~h~~------~v~~l~~-~-~~~l~sgs~-dg--- 271 (475)
.-.+.|.+|.|..+++.+++...+|.|++||...+... ..+. .+.. -|..... + ..++++.+. ++
T Consensus 127 kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 127 KLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred EcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence 34678999999999999999999999999998332221 1222 1222 2222221 1 345555444 32
Q ss_pred cEEEEECCCCCccEEEec---CccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEecc-----c-cceeEEE
Q 011916 272 NILQHDLRVSSDYICKLA---GHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTEH-----T-AAVKAIA 341 (475)
Q Consensus 272 ~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h-----~-~~v~~l~ 341 (475)
..+++.+......+..+. .+........|+. +|.+..- .++.|.+|++...+...++.-. . ..+.++.
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~ 284 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK 284 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence 456666622233232222 1222222233333 4543333 5679999999877655544321 1 1233332
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec
Q 011916 342 WSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD 376 (475)
Q Consensus 342 ~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~ 376 (475)
- |....++.+ .+++|++.|+.-...+.+++
T Consensus 285 ~-~s~nRvLLs----~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 285 P-PSPNRVLLS----VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred c-CCCCeEEEE----cCCEEEEEeehhhhhhhhhh
Confidence 2 233335554 58999999998777666665
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=93.20 E-value=9.6 Score=37.77 Aligned_cols=185 Identities=16% Similarity=0.202 Sum_probs=106.6
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC----CCCE--EEEEeC-C---CcEEEEECCCC-ceeEEE
Q 011916 262 RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH----DDRE--LASGGN-D---NQLLVWNQHSQ-QPTLRL 330 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~----~~~~--lasg~~-D---g~I~iwd~~~~-~~~~~~ 330 (475)
.+++....++-+.+||+. ++.++.+.. +.+..+..-. .|+. ||.++. + +.|++|.+... ..+..+
T Consensus 69 SlIigTdK~~GL~VYdL~--Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v 144 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLD--GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDV 144 (381)
T ss_dssp -EEEEEETTTEEEEEETT--S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-
T ss_pred ceEEEEeCCCCEEEEcCC--CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEc
Confidence 577777888899999996 455555532 2333332211 3332 444442 2 56999977531 123333
Q ss_pred ec-------cccceeEEEE--CC-CCCcEEEEecCCCCCeEEEEECC---CC----ceeeeecCCCCeeEEEEcCCCCeE
Q 011916 331 TE-------HTAAVKAIAW--SP-HQSSLLASGGGTADRCIRFWNTS---NG----HQLNSVDTGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 331 ~~-------h~~~v~~l~~--sp-~~~~ll~sg~Gs~d~~I~iwd~~---~~----~~~~~~~~~~~v~~l~~s~~~~~l 393 (475)
.. ....+..+++ ++ +|...+...+ .+|.+..|.+. .+ +.++.+...+++..+........|
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~--k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG--KDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRL 222 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE--TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEec--CCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCE
Confidence 21 1123566766 34 4554555443 78988877764 33 467888888999999999999999
Q ss_pred EEEEecCCCeEEEEECCC-----CceEEEecC--CCcceEEEEEC--CCC--CEEEEEeCCCCEEEEecCCC
Q 011916 394 VSTHGYSQNQIMVWKYPS-----MAKVSTLTG--HSLRVLYLATS--PDG--QTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 394 ~~~~g~~dg~I~iwd~~~-----~~~~~~l~~--h~~~V~~l~~s--pdg--~~l~s~s~Dg~I~iW~~~~~ 454 (475)
++ +.++.-|.-|+... ++.+....+ ....|-.|++- .++ -+|+|.-.+++..||+....
T Consensus 223 Yv--gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YV--GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EE--EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EE--ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99 88887777777642 233333333 34567777763 343 34555556788999998754
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.95 E-value=4.7 Score=42.65 Aligned_cols=110 Identities=15% Similarity=0.221 Sum_probs=71.3
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEe----CCCEEEEEeCCCcEEEEECC-----C
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAW----NSRILSSGSRDRNILQHDLR-----V 280 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~----~~~~l~sgs~dg~I~iwd~~-----~ 280 (475)
...-+.-+.-++..++-.....+.|||...+.....-. ...+.|.++.| +++.+++.|....|.++--. .
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444445555555554455679999998887544332 45788999999 56788888888888887431 1
Q ss_pred CC---ccEEE--ecCcc-CCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 281 SS---DYICK--LAGHK-SEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 281 ~~---~~~~~--~~~h~-~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
.. ..+.. +..|+ .+|.+..|.++|.+++.+| +.+.|+|-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 11 11222 23344 6799999999996665554 578888753
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=92.78 E-value=2.1 Score=45.05 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=58.1
Q ss_pred EECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 364 WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 364 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
.|+-.|+....+.|.+.|.-+..+..+..|+. -...-.+.++|+.+.+....+ .-...|.|-|-...|+.-+.|
T Consensus 323 vdli~g~~~~~inh~~~vdwielne~~~kllf--rdkk~kl~l~di~s~qksmil----nfcsymqwvp~sdvivaqn~d 396 (1636)
T KOG3616|consen 323 VDLIGGQNEGFINHEGAVDWIELNERAHKLLF--RDKKLKLHLVDIESCQKSMIL----NFCSYMQWVPGSDVIVAQNGD 396 (1636)
T ss_pred eecccCcccccccccccccceeccchhhhhhc--ccccceeEEEEcccchHHHHH----HHhhhheeccCcceEEecCCC
Confidence 45556666677777888887888887777776 555567888898765543222 234678899988888877766
Q ss_pred CCEEEE-ecCCCCC
Q 011916 444 ETLRFW-NVFPSLK 456 (475)
Q Consensus 444 g~I~iW-~~~~~~~ 456 (475)
. +.|| +++..+.
T Consensus 397 n-l~iwyn~d~peq 409 (1636)
T KOG3616|consen 397 N-LCIWYNIDAPEQ 409 (1636)
T ss_pred c-eEEEecCCcchh
Confidence 5 6666 5554443
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.75 E-value=3.6 Score=41.73 Aligned_cols=28 Identities=18% Similarity=0.035 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 293 SEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
-+|..+..++.|..++-.|.+|.+.++=
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 3578888999999999999998766554
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.76 Score=29.29 Aligned_cols=41 Identities=12% Similarity=0.277 Sum_probs=32.7
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEE
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAW 386 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~ 386 (475)
|+++.|+++.. .++.|.++|..+++.+..+..+.....++|
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 57788888765 689999999999999888877665666655
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.00 E-value=2.6 Score=47.24 Aligned_cols=137 Identities=14% Similarity=0.218 Sum_probs=90.6
Q ss_pred eCCCcEEEEECCCCceeEEEeccccceeEEE--------ECCCCCcEEEEecCCCCCeEEEEECC----CCcee-----e
Q 011916 311 GNDNQLLVWNQHSQQPTLRLTEHTAAVKAIA--------WSPHQSSLLASGGGTADRCIRFWNTS----NGHQL-----N 373 (475)
Q Consensus 311 ~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~--------~sp~~~~ll~sg~Gs~d~~I~iwd~~----~~~~~-----~ 373 (475)
+.|+.+.+|+..++.....+.+-...|..|. |-|.=+++++.+ .--.|.++-+. ++..- .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvva---T~~ei~ilgV~~~~~~~~~~~f~~~~ 172 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVA---TPVEIVILGVSFDEFTGELSIFNTSF 172 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEec---ccceEEEEEEEeccccCcccccccce
Confidence 4578999999999777777777666666655 344556666665 35555555432 21111 1
Q ss_pred eec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC--C---c---e--------------EEEec-CCCcceEEEE
Q 011916 374 SVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--M---A---K--------------VSTLT-GHSLRVLYLA 429 (475)
Q Consensus 374 ~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--~---~---~--------------~~~l~-~h~~~V~~l~ 429 (475)
.+. .+..|.++....+|+.+++ | .||.|+-.-+.. + + + +..+. .+..+|..+.
T Consensus 173 ~i~~dg~~V~~I~~t~nGRIF~~--G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 173 KISVDGVSVNCITYTENGRIFFA--G-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred eeecCCceEEEEEeccCCcEEEe--e-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 122 3567889998888888886 5 566544322221 1 0 0 12233 4677999999
Q ss_pred ECCCCCEEEEEeCCCCEEEEecCC
Q 011916 430 TSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 430 ~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.......|.+-+..|+|.+|++..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 988888999999999999999987
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.91 E-value=2.2 Score=43.00 Aligned_cols=130 Identities=18% Similarity=0.147 Sum_probs=86.1
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCC-------EEEEEeCCCeEEEEECC-CCeeeEEecCCCCceE---
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGS-------YISVGTNLGQVQVWDGT-QCKRVRTFGGHQTRAG--- 255 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~-------~la~g~~dg~v~iwd~~-~~~~~~~~~~h~~~v~--- 255 (475)
...+|-.|++.|+++..+.++ +.| -|.|.|+.+ .-++|-.+..|.-.|.. .+..+.... ....++
T Consensus 489 ~~kLykmDIErGkvveeW~~~--ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~ 564 (776)
T COG5167 489 RDKLYKMDIERGKVVEEWDLK--DDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNK 564 (776)
T ss_pred cccceeeecccceeeeEeecC--Ccc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhcccccc
Confidence 467888899999999998753 333 567777432 34456555566555643 232222211 111111
Q ss_pred --E-EEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 256 --V-LAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 256 --~-l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
+ ..-...+++++++.|.|++||-- +......+.+....|..|..+.+|.++++.+. ..|.+-|++
T Consensus 565 Fss~~tTesGyIa~as~kGDirLyDRi-g~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 565 FSSGMTTESGYIAAASRKGDIRLYDRI-GKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred ccccccccCceEEEecCCCceeeehhh-cchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 2 22245799999999999999964 44445567788889999999999998877765 578887765
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=91.59 E-value=17 Score=36.76 Aligned_cols=142 Identities=10% Similarity=0.099 Sum_probs=82.3
Q ss_pred CCCEEEEEeCCCeEEEEECCCCe-----eeEEecCCCCceEEEEeC------CCEEEEEeCCCcEEEEECCCCC------
Q 011916 220 EGSYISVGTNLGQVQVWDGTQCK-----RVRTFGGHQTRAGVLAWN------SRILSSGSRDRNILQHDLRVSS------ 282 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~~-----~~~~~~~h~~~v~~l~~~------~~~l~sgs~dg~I~iwd~~~~~------ 282 (475)
+...|++|+.+|.++||+..... .+.+ ..-..+|..+... ....++.-.-+.+.+|.+....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccC
Confidence 34689999999999999975432 1111 1234577777652 2333333556677777773221
Q ss_pred --ccEEEecCccC--CEEEEEEcC----C-CCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEe
Q 011916 283 --DYICKLAGHKS--EVCGLKWSH----D-DRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 283 --~~~~~~~~h~~--~V~~l~~s~----~-~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg 353 (475)
..+..+..|.- ....+++-+ . ..++.+=+.||.+.+++-+.......+.. ---...+.+++.-..++++.
T Consensus 115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~s 193 (418)
T PF14727_consen 115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTAS 193 (418)
T ss_pred cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEec
Confidence 11222333332 223333322 2 35788889999999999876543333333 22234577877777666654
Q ss_pred cCCCCCeEEEEEC
Q 011916 354 GGTADRCIRFWNT 366 (475)
Q Consensus 354 ~Gs~d~~I~iwd~ 366 (475)
.+..+.-|..
T Consensus 194 ---ss~~l~~Yky 203 (418)
T PF14727_consen 194 ---SSWTLECYKY 203 (418)
T ss_pred ---CceeEEEecH
Confidence 4677777754
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=91.37 E-value=2.7 Score=42.24 Aligned_cols=87 Identities=14% Similarity=0.097 Sum_probs=59.0
Q ss_pred ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeE-EEECCC-----------------CCcE
Q 011916 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKA-IAWSPH-----------------QSSL 349 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~-l~~sp~-----------------~~~l 349 (475)
+......+.+|..+|++++.|+..+-|.|.++|+..+..++.+++-.++-.. +..... ..+|
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3344567889999999999999888899999999998877776653332111 111111 1123
Q ss_pred EEEecCCCCCeEEEEECCCCceeeeec
Q 011916 350 LASGGGTADRCIRFWNTSNGHQLNSVD 376 (475)
Q Consensus 350 l~sg~Gs~d~~I~iwd~~~~~~~~~~~ 376 (475)
+.-. -.-|.|.||.+++|..+..+.
T Consensus 383 vIya--prRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYA--PRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEe--ccCCeEEEEecCCCCEEEEEE
Confidence 3322 268999999999988877664
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=91.34 E-value=27 Score=38.61 Aligned_cols=155 Identities=13% Similarity=0.168 Sum_probs=97.0
Q ss_pred CCCCcEEEEEEc---C----CCCEEEEEeCCCeEEEEECCCC---------------eeeEEecC---CCCceEEEEeCC
Q 011916 207 GPGDSVCSVQWT---R----EGSYISVGTNLGQVQVWDGTQC---------------KRVRTFGG---HQTRAGVLAWNS 261 (475)
Q Consensus 207 ~~~~~V~~v~~s---p----dg~~la~g~~dg~v~iwd~~~~---------------~~~~~~~~---h~~~v~~l~~~~ 261 (475)
....+|..|+|. . ..++|++=.. ..+.|+...-. ..+..+.. .......++||+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~-~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTE-TSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcC-CEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 2246666655 56777762211 22333331 223556777763
Q ss_pred ---CEEEEEeCCCcEEEEECCCC----CccEEEecCcc----------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011916 262 ---RILSSGSRDRNILQHDLRVS----SDYICKLAGHK----------SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 262 ---~~l~sgs~dg~I~iwd~~~~----~~~~~~~~~h~----------~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
..||.....|...|||+... .........+. .....|.|.++-+.|++++. ..+.++|+++.
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~~ 234 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFESN 234 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCCC
Confidence 79999999999999999211 11111111112 22347889888888888776 57899999877
Q ss_pred ceeE--EEeccccceeEEEECCC--CCcEEEEecCCCCCeEEEEECCC
Q 011916 325 QPTL--RLTEHTAAVKAIAWSPH--QSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 325 ~~~~--~~~~h~~~v~~l~~sp~--~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
.... ........|..+.-+|. +..++. ....|...++..
T Consensus 235 ~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-----Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 235 WQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-----TSKEIIWLDVKS 277 (765)
T ss_pred CccchhccCCChhheeeEEecCCccceEEEE-----ecCeEEEEEccC
Confidence 5522 22234567889988887 333333 357888888876
|
These proteins are found in fungi. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=90.91 E-value=1.8 Score=39.55 Aligned_cols=70 Identities=9% Similarity=0.064 Sum_probs=39.8
Q ss_pred EEEeCCCEEEEEeCCCcEEEEECCCCCccEEE------ec-------CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 256 VLAWNSRILSSGSRDRNILQHDLRVSSDYICK------LA-------GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 256 ~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~------~~-------~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
.+..++++|++.+.+|.+++||+......... +. .....|..+.++.+|.-+++-++ |..+.|+..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn-g~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN-GDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC-CCEEEeccc
Confidence 34444555555555555555555422211110 11 34566888888888877776654 788888876
Q ss_pred CCce
Q 011916 323 SQQP 326 (475)
Q Consensus 323 ~~~~ 326 (475)
-+.-
T Consensus 96 L~~W 99 (219)
T PF07569_consen 96 LGCW 99 (219)
T ss_pred ccee
Confidence 5443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.039 Score=54.76 Aligned_cols=133 Identities=17% Similarity=0.279 Sum_probs=94.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--C-CEEEEEeCCCcEEEEECCCCCccEEEec
Q 011916 213 CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--S-RILSSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 213 ~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
....|-+.+.-+++++.+..|..||-. ++..... ...+....++|| + ..++.+-..+.+.+||+.........+.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~g 115 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILEL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESG 115 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceeccc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhcc
Confidence 345688877779998888889999843 3332222 244566778885 3 4566677889999999974332222222
Q ss_pred C-ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcE
Q 011916 290 G-HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSL 349 (475)
Q Consensus 290 ~-h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~l 349 (475)
+ |... -+.|++.+..++.+...|.+.|++..+.+.+.....|...+.+++|.+.+..+
T Consensus 116 g~~s~s--ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 116 GTSSKS--LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred CcchHH--HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 2 2222 27899999999999999999999998887776666699999999999988633
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=90.81 E-value=17 Score=35.56 Aligned_cols=91 Identities=11% Similarity=0.072 Sum_probs=48.8
Q ss_pred CeEEEEECCCCcEEEEeeCCC--CC---cEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeE--EecC---CCC
Q 011916 188 TCVYLWTASNSKVTRLCDLGP--GD---SVCSVQWTREGSYISVGTNL-----GQVQVWDGTQCKRVR--TFGG---HQT 252 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~--~~---~V~~v~~spdg~~la~g~~d-----g~v~iwd~~~~~~~~--~~~~---h~~ 252 (475)
+.+++||..+.+......... .. ....+.+ ++++++.|+.+ ..+.+||..+.+-.. .+.. ...
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~ 127 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCC
Confidence 368899998877665433211 11 1222222 56677777753 357888987654332 2210 111
Q ss_pred ce--EEEEeCCCEEEEEeCC-----------CcEEEEECCC
Q 011916 253 RA--GVLAWNSRILSSGSRD-----------RNILQHDLRV 280 (475)
Q Consensus 253 ~v--~~l~~~~~~l~sgs~d-----------g~I~iwd~~~ 280 (475)
+. .....++.+++.|+.+ ..+.+||...
T Consensus 128 R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~ 168 (341)
T PLN02153 128 RTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIAD 168 (341)
T ss_pred ceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCC
Confidence 11 2233466777777754 2467788763
|
|
| >KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.77 E-value=19 Score=40.46 Aligned_cols=179 Identities=15% Similarity=0.171 Sum_probs=102.8
Q ss_pred EEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC---------CCCEEEEEeC---------CCeEEEEECC-----
Q 011916 183 AVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR---------EGSYISVGTN---------LGQVQVWDGT----- 239 (475)
Q Consensus 183 a~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp---------dg~~la~g~~---------dg~v~iwd~~----- 239 (475)
.-+....|.|.+..+.+++..+++...+.|++++..- ...|||+|+. .|.+.|+|+-
T Consensus 999 p~~~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPe 1078 (1366)
T KOG1896|consen 999 PEGEQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPE 1078 (1366)
T ss_pred cccccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCC
Confidence 3344556888888888877777776677777776532 1358999864 3889999852
Q ss_pred CCe-----eeEEe--cCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEE-ecCccCCEEEEEEcCCCCEEEEE
Q 011916 240 QCK-----RVRTF--GGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICK-LAGHKSEVCGLKWSHDDRELASG 310 (475)
Q Consensus 240 ~~~-----~~~~~--~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~~~~~lasg 310 (475)
-++ .++.+ +..++.|..++- +|+++.+- ...|.+|++......+-. +.. -.+.-....-=+++|+.|
T Consensus 1079 pgkP~t~~KlKel~~eE~KGtVsavceV~G~l~~~~--GqKI~v~~l~r~~~ligVaFiD--~~~yv~s~~~vknlIl~g 1154 (1366)
T KOG1896|consen 1079 PGKPFTKNKLKELYIEEQKGTVSAVCEVRGHLLSSQ--GQKIIVRKLDRDSELIGVAFID--LPLYVHSMKVVKNLILAG 1154 (1366)
T ss_pred CCCCcccceeeeeehhhcccceEEEEEeccEEEEcc--CcEEEEEEeccCCcceeeEEec--cceeEEehhhhhhheehh
Confidence 222 22222 245677877775 56555443 357999999533332221 111 112222222234566666
Q ss_pred eCCCcEEEEECCCCce-eEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 311 GNDNQLLVWNQHSQQP-TLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 311 ~~Dg~I~iwd~~~~~~-~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
..-..|.+.-....-. +.-+. ...-.+.++.|--+|..|....+ .+|+.|++|-.
T Consensus 1155 DV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs-Da~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1155 DVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS-DADRNIHVYMY 1212 (1366)
T ss_pred hhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEE-cCCCcEEEEEe
Confidence 6656666655443221 11111 13345788888888876644432 47899998864
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=90.62 E-value=2 Score=37.67 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=26.6
Q ss_pred cceEEEEECCCC------CEEEEEeCCCCEEEEecCCC
Q 011916 423 LRVLYLATSPDG------QTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 423 ~~V~~l~~spdg------~~l~s~s~Dg~I~iW~~~~~ 454 (475)
..|.+++|||-| .+|++.+.++.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 478999999954 47888999999999987754
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.44 E-value=16 Score=34.57 Aligned_cols=194 Identities=11% Similarity=0.070 Sum_probs=115.6
Q ss_pred CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc-CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce--
Q 011916 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK-SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP-- 326 (475)
Q Consensus 250 h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~-- 326 (475)
-..-+..+.+.+++...+..+.-++|.|+.....+...-.-.. +--.++.. .|++..++..|.-+.+.|+.+...
T Consensus 85 ~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~ 162 (370)
T COG5276 85 ARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ 162 (370)
T ss_pred hhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence 3445667777889999999999999999987665544322222 33444444 588999998778888999886542
Q ss_pred -eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc---eeeeecCCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 327 -TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH---QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 327 -~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~---~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
.-...........++.+-+- -+.+. .|+-+.+.|+.... .+...+.+..+.++..+++.-+++. . +.
T Consensus 163 lagrya~~~~d~~~v~ISGn~--AYvA~---~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vv--y--~e 233 (370)
T COG5276 163 LAGRYALPGGDTHDVAISGNY--AYVAW---RDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVV--Y--DE 233 (370)
T ss_pred eeeeeccCCCCceeEEEecCe--EEEEE---eCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEE--c--cc
Confidence 22333333334566666443 33332 68889999987654 4455566767888888888777766 2 33
Q ss_pred eEEEEECCCCceEEEecC-CCcceEEE-EECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 403 QIMVWKYPSMAKVSTLTG-HSLRVLYL-ATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~-h~~~V~~l-~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
-+.+-|..+.+....+-. .+..+.++ .+.-.+++...+..+.-+-+-|+...
T Consensus 234 gvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 234 GVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred ceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCC
Confidence 466666655442222211 11111111 12223455555555555555555543
|
|
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=90.19 E-value=33 Score=37.76 Aligned_cols=68 Identities=15% Similarity=0.091 Sum_probs=50.4
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe----cC---------------CCcceEEEEECCCCCEEE
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL----TG---------------HSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l----~~---------------h~~~V~~l~~spdg~~l~ 438 (475)
...|.++....-+..++. .+.||.|.++|-.+++.+... .. +-..+..++|||.+..++
T Consensus 259 ~~~V~si~~~~~~~~v~~--~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAF--AFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred CCeEEEEEecccCcEEEE--EEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 345777777777777777 789999999998887655444 10 112345689999999999
Q ss_pred EEeCCCCEE
Q 011916 439 TGAGDETLR 447 (475)
Q Consensus 439 s~s~Dg~I~ 447 (475)
.-..||.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 999999965
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=89.99 E-value=27 Score=36.41 Aligned_cols=242 Identities=13% Similarity=0.139 Sum_probs=114.9
Q ss_pred CCEEEEEcCCeEEEEECCCCc-EEEEeeCCC-CCcEEEEEEcCCC-CEEEEEeCCC--eEEEEECCCCeeeEEecCCCCc
Q 011916 179 QNVLAVGLGTCVYLWTASNSK-VTRLCDLGP-GDSVCSVQWTREG-SYISVGTNLG--QVQVWDGTQCKRVRTFGGHQTR 253 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~-~~~~~~~~~-~~~V~~v~~spdg-~~la~g~~dg--~v~iwd~~~~~~~~~~~~h~~~ 253 (475)
+.++.+..+|.++...+.... .+....++. .....++.+..+| .+|++|+.-| .+.-|....-+.+..+. .-++
T Consensus 223 ~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~-N~~P 301 (504)
T PF10433_consen 223 DRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP-NWGP 301 (504)
T ss_dssp SEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-----S
T ss_pred CEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc-CcCC
Confidence 357778889998888776544 222222232 4455667766555 4788887754 45555544444555554 3356
Q ss_pred eEEEEe-C----C-C------EEEEEe---CCCcEEEEECCCCCc-cEEEecCc--cCCEEEEEEcC-CCCEEEEEeCCC
Q 011916 254 AGVLAW-N----S-R------ILSSGS---RDRNILQHDLRVSSD-YICKLAGH--KSEVCGLKWSH-DDRELASGGNDN 314 (475)
Q Consensus 254 v~~l~~-~----~-~------~l~sgs---~dg~I~iwd~~~~~~-~~~~~~~h--~~~V~~l~~s~-~~~~lasg~~Dg 314 (475)
|..++. + + . .|++++ .+|.+++..-...-. ........ -..++.+.... ++.+|+.+..+
T Consensus 302 i~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~- 380 (504)
T PF10433_consen 302 IVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPN- 380 (504)
T ss_dssp EEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESS-
T ss_pred ccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCC-
Confidence 777766 1 1 1 555553 567787764321111 01111111 23344444332 24566666654
Q ss_pred cEEEEECC---CCceeEEEe--cc---ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--CCCCeeEE
Q 011916 315 QLLVWNQH---SQQPTLRLT--EH---TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--TGSQVCNL 384 (475)
Q Consensus 315 ~I~iwd~~---~~~~~~~~~--~h---~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--~~~~v~~l 384 (475)
.-+++.+. ..+.+..+. +. ...+.+-.+. ++. ++=. ....|++.+...++...... .+..|.+.
T Consensus 381 ~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~~-ivQV----t~~~i~l~~~~~~~~~~~w~~~~~~~I~~a 454 (504)
T PF10433_consen 381 ETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DGR-IVQV----TPKGIRLIDLEDGKLTQEWKPPAGSIIVAA 454 (504)
T ss_dssp EEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TTE-EEEE----ESSEEEEEESSSTSEEEEEE-TTS---SEE
T ss_pred ceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CCe-EEEE----ecCeEEEEECCCCeEEEEEeCCCCCeEEEE
Confidence 34455543 233332221 11 1122222222 222 3333 35778899888777776653 34445555
Q ss_pred EEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-C----CCcceEEEEECC
Q 011916 385 AWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-G----HSLRVLYLATSP 432 (475)
Q Consensus 385 ~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~----h~~~V~~l~~sp 432 (475)
+... .++++ ...++.+.++.+.......... . ....|.|+...|
T Consensus 455 ~~~~--~~v~v--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 455 SIND--PQVLV--ALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EESS--SEEEE--EE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EECC--CEEEE--EEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 5543 45555 3457888888887665543322 1 456788887765
|
... |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.97 E-value=14 Score=33.28 Aligned_cols=141 Identities=10% Similarity=0.092 Sum_probs=82.4
Q ss_pred CEEEEEeCCCcEEEEECC--CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC---eEEEE-ECCC----Cceee-
Q 011916 305 RELASGGNDNQLLVWNQH--SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR---CIRFW-NTSN----GHQLN- 373 (475)
Q Consensus 305 ~~lasg~~Dg~I~iwd~~--~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~---~I~iw-d~~~----~~~~~- 373 (475)
..|..+...+.|.+|++. ..+.+..|.. -+.|..++++..|+++++.-.-.... .+|+| |.+. ..++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 344444555789999998 3345556654 48899999999999998875422223 56665 2221 11111
Q ss_pred ----------------------eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------EEEec----C-
Q 011916 374 ----------------------SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK------VSTLT----G- 420 (475)
Q Consensus 374 ----------------------~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~------~~~l~----~- 420 (475)
++....++.+++..|-...|++ | .++.+.+|.+..... +..+. .
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV--g-~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~ 184 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV--G-CGNKLVLFTLKYQTIQSEKFSFLDFERSLIDH 184 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE--E-cCCEEEEEEEEEEEEecccccEEechhhhhhe
Confidence 1123346778888886666666 4 478899998754322 11111 1
Q ss_pred CCc-ceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 421 HSL-RVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 421 h~~-~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
|.+ .+..+++. +.++|..+ |-.+++.++.
T Consensus 185 ~~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 185 IDNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ecCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 111 24556663 55777765 4467777663
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.91 E-value=1.6 Score=28.29 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=24.7
Q ss_pred cceeEEEECCCCC--cEEEEecCCCCCeEEEEECCC
Q 011916 335 AAVKAIAWSPHQS--SLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 335 ~~v~~l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
++|.++.|+|... .|++... .-+.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E--~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAE--HQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEc--cCCeEEEEEccc
Confidence 4689999998655 4555544 689999999985
|
It contains a characteristic DLL sequence motif. |
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=89.79 E-value=23 Score=35.32 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=41.1
Q ss_pred CCeEEEEECCC--CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC-----------eEEEEECCCCeeeEEec-CCCC
Q 011916 187 GTCVYLWTASN--SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG-----------QVQVWDGTQCKRVRTFG-GHQT 252 (475)
Q Consensus 187 ~~~V~lw~~~~--~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg-----------~v~iwd~~~~~~~~~~~-~h~~ 252 (475)
+..++++|+.. .+...+..+............-++.+.++|+.+. .+..||..+.+-...-. ....
T Consensus 49 ~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~ 128 (376)
T PRK14131 49 GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVG 128 (376)
T ss_pred CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCc
Confidence 45678888764 3344433322111111111223567777776532 47778877654332211 1111
Q ss_pred --ceEEEE-eCCCEEEEEeCC
Q 011916 253 --RAGVLA-WNSRILSSGSRD 270 (475)
Q Consensus 253 --~v~~l~-~~~~~l~sgs~d 270 (475)
...+++ .++.+.+.|+.+
T Consensus 129 ~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 129 LAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred ccceEEEEeeCCEEEEECCCC
Confidence 122333 477888888764
|
|
| >PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) | Back alignment and domain information |
|---|
Probab=89.76 E-value=31 Score=36.78 Aligned_cols=239 Identities=11% Similarity=0.126 Sum_probs=119.5
Q ss_pred eEEecCCC-CEEEEEc-CCeEEEEEC-CCCcEEEEeeCCCCCcEEEEEEcCC---CCEEEEEeCCCe-EEEEECCCC---
Q 011916 172 NLVDWSSQ-NVLAVGL-GTCVYLWTA-SNSKVTRLCDLGPGDSVCSVQWTRE---GSYISVGTNLGQ-VQVWDGTQC--- 241 (475)
Q Consensus 172 ~~l~ws~~-~~la~~~-~~~V~lw~~-~~~~~~~~~~~~~~~~V~~v~~spd---g~~la~g~~dg~-v~iwd~~~~--- 241 (475)
.+..++++ +.+-.|- +..|.-|=+ .+.+.+-...+....-|.|+..-.. .++.++|-.++. -++-.+..+
T Consensus 31 vs~~~s~~sn~IdiGIS~S~ISsYIi~PTPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~ 110 (670)
T PF10395_consen 31 VSDDFSPDSNQIDIGISGSAISSYIIKPTPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGS 110 (670)
T ss_pred eecccCCCCceEEEEeccchhhheecCCCcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCcc
Confidence 33355554 4444444 344433333 2445555555566777888776432 245566644433 343332222
Q ss_pred --------eeeEEec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC-ccEEEec-CccC------CEEEEEEcC
Q 011916 242 --------KRVRTFG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS-DYICKLA-GHKS------EVCGLKWSH 302 (475)
Q Consensus 242 --------~~~~~~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~-~h~~------~V~~l~~s~ 302 (475)
+...+++ .-...|..+.+ ++..+++...+|.|.+||..... ..+..+. .+.. -|.....-.
T Consensus 111 ~~~~~~~~e~~~~~~~kl~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~ 190 (670)
T PF10395_consen 111 TEDGTVNSETTNEFELKLDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELEN 190 (670)
T ss_pred ccccccCccccceEEEEcccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhccccccc
Confidence 1111111 13567777777 46899999999999999993111 1111111 1111 122222111
Q ss_pred CCCEEEEEeC-C---CcEEEEECC-CCceeEEEe---ccccceeEEEECC-CCCcEEEEecCCCCCeEEEEECCCCceee
Q 011916 303 DDRELASGGN-D---NQLLVWNQH-SQQPTLRLT---EHTAAVKAIAWSP-HQSSLLASGGGTADRCIRFWNTSNGHQLN 373 (475)
Q Consensus 303 ~~~~lasg~~-D---g~I~iwd~~-~~~~~~~~~---~h~~~v~~l~~sp-~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~ 373 (475)
...++++.+. + -..+++.+. ....+..+. .+........|+- +|. |+.- .+++|.+|++...+..+
T Consensus 191 ~~~~ll~v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~-LY~l----~~~~i~~ysip~f~~~~ 265 (670)
T PF10395_consen 191 GKDLLLTVSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGK-LYQL----SKKTISSYSIPNFQIQK 265 (670)
T ss_pred CCceEEEEEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCE-EEEE----eCCEEEEEEcCCceEEE
Confidence 2234444333 2 246677771 222233332 1222223333332 444 4443 47899999998888777
Q ss_pred eecCC-------CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec
Q 011916 374 SVDTG-------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 374 ~~~~~-------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
++... ..+.++.- |..+.++. + .++.|++.|+.-...+.++.
T Consensus 266 tI~l~~ii~~~~~~~vSl~~-~s~nRvLL--s-~~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 266 TISLPSIIDKESDDLVSLKP-PSPNRVLL--S-VNNKIYLLDLKFESILSEFE 314 (670)
T ss_pred EEEechhhccccccceEeec-CCCCeEEE--E-cCCEEEEEeehhhhhhhhhh
Confidence 76533 23334432 33344444 2 57899999986555554444
|
It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex []. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=89.57 E-value=25 Score=35.39 Aligned_cols=108 Identities=8% Similarity=0.161 Sum_probs=66.5
Q ss_pred CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-----eeEEEec--cccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 290 GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ-----PTLRLTE--HTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 290 ~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~-----~~~~~~~--h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
.....+.++.|.+++..++++ .+|.+.. ....++ ....... ....+.++.|.+++. ++++| ..|.+.
T Consensus 278 ~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~-~~a~G---~~G~v~ 351 (398)
T PLN00033 278 ASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE-AWAAG---GSGILL 351 (398)
T ss_pred CCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCc-EEEEE---CCCcEE
Confidence 345568899999998877766 4565443 333332 1222211 123588899998877 66666 477666
Q ss_pred EEECCCCceeeeec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 363 FWNTSNGHQLNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 363 iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
... ..|+.-.... .......+.|.++++-+++ | .+|.|.-|
T Consensus 352 ~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~--G-~~G~il~~ 396 (398)
T PLN00033 352 RST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL--G-NDGVLLRY 396 (398)
T ss_pred EeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE--e-CCcEEEEe
Confidence 553 4455433332 2456889999888777776 5 67776554
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.49 E-value=17 Score=39.02 Aligned_cols=99 Identities=11% Similarity=0.150 Sum_probs=65.2
Q ss_pred EEEEecCCCCCeEEEEECCC-------C-------------ceeeeecCCCCeeEEEEc--CCCCeEEEEEecCCCeEEE
Q 011916 349 LLASGGGTADRCIRFWNTSN-------G-------------HQLNSVDTGSQVCNLAWS--KNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~~-------~-------------~~~~~~~~~~~v~~l~~s--~~~~~l~~~~g~~dg~I~i 406 (475)
+++.+. .||.|.+|.+.+ . ++...+..+..++.++++ ...+.||+ +.....|.|
T Consensus 116 VLl~c~--DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV--SsNs~~VTV 191 (717)
T PF08728_consen 116 VLLLCT--DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV--SSNSQEVTV 191 (717)
T ss_pred EEEEEe--cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE--ecCCceEEE
Confidence 444443 899999997631 0 122334456789999998 77788887 666677777
Q ss_pred EECCCC-ceEEEe--cCCCcceEEEEECCCC---C---EEEEEeCCCCEEEEec
Q 011916 407 WKYPSM-AKVSTL--TGHSLRVLYLATSPDG---Q---TIVTGAGDETLRFWNV 451 (475)
Q Consensus 407 wd~~~~-~~~~~l--~~h~~~V~~l~~spdg---~---~l~s~s~Dg~I~iW~~ 451 (475)
|-+... +..... ..|..-|-+|+|-++. . .|++++-.|.+.+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 765432 111111 1255568888887643 2 7888888999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=89.42 E-value=20 Score=34.18 Aligned_cols=201 Identities=14% Similarity=0.118 Sum_probs=113.2
Q ss_pred eEEEEeCC--CEEEEEeCCCcEEEEECCC------CCccEEEecC-----ccCCEEEEEEcCCCC------------EEE
Q 011916 254 AGVLAWNS--RILSSGSRDRNILQHDLRV------SSDYICKLAG-----HKSEVCGLKWSHDDR------------ELA 308 (475)
Q Consensus 254 v~~l~~~~--~~l~sgs~dg~I~iwd~~~------~~~~~~~~~~-----h~~~V~~l~~s~~~~------------~la 308 (475)
-+.|++++ .+-++...-+...+||... ....+..+.. .....+.+.|+.... .++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 34566653 5555666667888998861 2222333332 234577888875332 367
Q ss_pred EEeCCCcEEEEECCCCce-----eEEEecc-ccc-eeEEEEC--CCCCcEEEEecCCCCCeEEEEECCCCceeee--e--
Q 011916 309 SGGNDNQLLVWNQHSQQP-----TLRLTEH-TAA-VKAIAWS--PHQSSLLASGGGTADRCIRFWNTSNGHQLNS--V-- 375 (475)
Q Consensus 309 sg~~Dg~I~iwd~~~~~~-----~~~~~~h-~~~-v~~l~~s--p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~--~-- 375 (475)
.+++||+|.-|...-... ...+... ... -+.+++. ..+.+|+++-- ..++|.+||-.-.+.... +
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF--~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF--RQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc--CCCceEEecCccccccCCCCccC
Confidence 788999999998543221 1223221 233 3556655 34677777754 789999998543322110 1
Q ss_pred ---cCCCC---eeE---------EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec--CCCcceEEEEECC------
Q 011916 376 ---DTGSQ---VCN---------LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT--GHSLRVLYLATSP------ 432 (475)
Q Consensus 376 ---~~~~~---v~~---------l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~sp------ 432 (475)
..+.. |.. ..-.++...=+. |..-|.|-+||. .+..+..+. +.-...+.|+..|
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~--G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~ 259 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVA--GAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCccccccc--CCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCC
Confidence 00111 111 111122222122 444578999996 466666663 2334567787765
Q ss_pred CCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 433 DGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
.|.+|+--=.||+|..+|..++.....
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~ 286 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQ 286 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeee
Confidence 467777666799999999987764433
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.41 E-value=4.5 Score=40.35 Aligned_cols=157 Identities=20% Similarity=0.101 Sum_probs=94.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-EEe-cCCCC----ceE-EEE--eCCCEEEEEeCCCcEEEE-EC
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV-RTF-GGHQT----RAG-VLA--WNSRILSSGSRDRNILQH-DL 278 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~-~~~-~~h~~----~v~-~l~--~~~~~l~sgs~dg~I~iw-d~ 278 (475)
...|..+-..|||+.|.+-+. .++.|+++.+.... +.+ ....+ .|+ .+. -.+.-|+++..||.|..| |+
T Consensus 220 ~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdv 298 (733)
T COG4590 220 FSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDV 298 (733)
T ss_pred ccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeee
Confidence 466778889999999888776 68889987654321 111 11111 122 111 135678889999999888 55
Q ss_pred CCCCcc----EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 279 RVSSDY----ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 279 ~~~~~~----~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
+..+.. ++.++-...++..+.--.+.+-+++-+..|++.++.....+.+.. ..--..+.-++++|.+.+++.-
T Consensus 299 r~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~e-- 375 (733)
T COG4590 299 RRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYLLSE-- 375 (733)
T ss_pred ecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchheee--
Confidence 533321 122222223333333222344566777778887776554444332 2223366788999999988874
Q ss_pred CCCCCeEEEEECCCCce
Q 011916 355 GTADRCIRFWNTSNGHQ 371 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~ 371 (475)
..|.|+++.+.+..+
T Consensus 376 --~~gki~~~~l~Nr~P 390 (733)
T COG4590 376 --DQGKIRLAQLENRNP 390 (733)
T ss_pred --cCCceEEEEecCCCC
Confidence 568899998876543
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=89.35 E-value=30 Score=36.05 Aligned_cols=228 Identities=12% Similarity=0.120 Sum_probs=115.0
Q ss_pred cCCCCEEEEEeCCCeEEEEECCCCe---eeEEecCC-CCceEEEEe-CCC--EEEEEeCCCcEEEEECCCCC-ccEEEec
Q 011916 218 TREGSYISVGTNLGQVQVWDGTQCK---RVRTFGGH-QTRAGVLAW-NSR--ILSSGSRDRNILQHDLRVSS-DYICKLA 289 (475)
Q Consensus 218 spdg~~la~g~~dg~v~iwd~~~~~---~~~~~~~h-~~~v~~l~~-~~~--~l~sgs~dg~I~iwd~~~~~-~~~~~~~ 289 (475)
..++..++.+..+|.+....+.... .+..+ +. .....++++ ... +|+.|+.-|.=.++.+.... ..+..+
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~- 296 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSL- 296 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEec-
Confidence 3467889999999999988776543 12222 22 455566776 445 99999876665555544222 222223
Q ss_pred CccCCEEEEEEcCC----CC------EEEEEe---CCCcEEEEECCCCce--eEEEecc--ccceeEEEECC-CCCcEEE
Q 011916 290 GHKSEVCGLKWSHD----DR------ELASGG---NDNQLLVWNQHSQQP--TLRLTEH--TAAVKAIAWSP-HQSSLLA 351 (475)
Q Consensus 290 ~h~~~V~~l~~s~~----~~------~lasg~---~Dg~I~iwd~~~~~~--~~~~~~h--~~~v~~l~~sp-~~~~ll~ 351 (475)
..-++|.++++-.. .. .|++++ .+|.+++..-.-+-. ....... -..++.+.... ++.+++.
T Consensus 297 ~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~ 376 (504)
T PF10433_consen 297 PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVL 376 (504)
T ss_dssp ----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEE
T ss_pred cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEE
Confidence 34567888888531 11 444443 467888774321111 1111112 23344444433 2455666
Q ss_pred EecCCCCCeEEEEECC---CCceeeee-----cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC-CC
Q 011916 352 SGGGTADRCIRFWNTS---NGHQLNSV-----DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG-HS 422 (475)
Q Consensus 352 sg~Gs~d~~I~iwd~~---~~~~~~~~-----~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~ 422 (475)
+. ...-+++.+. ..+.+..+ ....+-..+.... ++.++-+ ....|++.+....+....... ..
T Consensus 377 S~----~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~-~~~ivQV---t~~~i~l~~~~~~~~~~~w~~~~~ 448 (504)
T PF10433_consen 377 SF----PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG-DGRIVQV---TPKGIRLIDLEDGKLTQEWKPPAG 448 (504)
T ss_dssp EE----SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET-TTEEEEE---ESSEEEEEESSSTSEEEEEE-TTS
T ss_pred Ec----CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC-CCeEEEE---ecCeEEEEECCCCeEEEEEeCCCC
Confidence 53 3444555553 34443222 1222222222222 3344432 246688898887777766543 34
Q ss_pred cceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 423 LRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 423 ~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
..|...+.. +.+++.+..++.+.++.+......
T Consensus 449 ~~I~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~ 481 (504)
T PF10433_consen 449 SIIVAASIN--DPQVLVALSGGELVYFELDDNKIS 481 (504)
T ss_dssp ---SEEEES--SSEEEEEE-TTEEEEEEEETTEEE
T ss_pred CeEEEEEEC--CCEEEEEEeCCcEEEEEEECCcee
Confidence 456666663 456666777888999998776553
|
... |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.31 E-value=15 Score=36.76 Aligned_cols=138 Identities=14% Similarity=0.147 Sum_probs=84.9
Q ss_pred EEEeC-CCEEEEEeCCCcEEEEECCCCC--ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE----
Q 011916 256 VLAWN-SRILSSGSRDRNILQHDLRVSS--DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL---- 328 (475)
Q Consensus 256 ~l~~~-~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~---- 328 (475)
.+-|+ .+..+.+.+.|.+.-|-+...+ -++..-....++|.+|.||+|.+.||+--.|+.|.+++....+...
T Consensus 27 gvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~ 106 (657)
T KOG2377|consen 27 GVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQ 106 (657)
T ss_pred ceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHH
Confidence 34443 2444444455666666555332 2233333456799999999999999999999999999985443322
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee-cCCCCeeEEEEcCCCCeEEEEEe
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV-DTGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~-~~~~~v~~l~~s~~~~~l~~~~g 398 (475)
+.+.....|....|+.... ++.. .+.-+.+|-....+ .++.. .+...|.-..|.++.+.++.+++
T Consensus 107 ~ck~k~~~IlGF~W~~s~e-~A~i----~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 107 ECKTKNANILGFCWTSSTE-IAFI----TDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HhccCcceeEEEEEecCee-EEEE----ecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 2222345588889987644 4443 35556666654322 22222 24456777788888887776544
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.28 E-value=2.9 Score=38.27 Aligned_cols=71 Identities=14% Similarity=0.214 Sum_probs=50.5
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEe-------eC------CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLC-------DL------GPGDSVCSVQWTREGSYISVGTNLGQVQVWD 237 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~-------~~------~~~~~V~~v~~spdg~~la~g~~dg~v~iwd 237 (475)
+..+.-..+.+++++.+|.+++||+.+++..... .. .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus 15 ~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 15 VSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred eEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 3445656678999999999999999988754322 10 2456788888888887666544 58889998
Q ss_pred CCCCe
Q 011916 238 GTQCK 242 (475)
Q Consensus 238 ~~~~~ 242 (475)
..-+.
T Consensus 94 ~~L~~ 98 (219)
T PF07569_consen 94 PDLGC 98 (219)
T ss_pred cccce
Confidence 65443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.28 E-value=16 Score=32.93 Aligned_cols=103 Identities=16% Similarity=0.211 Sum_probs=65.6
Q ss_pred CEEEEEeCCCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCCC------cEEEE---ECC--CCceeE-
Q 011916 262 RILSSGSRDRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGNDN------QLLVW---NQH--SQQPTL- 328 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg------~I~iw---d~~--~~~~~~- 328 (475)
+.|+.+...+.|.+|++..... ....+. .-+.|..+.++..|++|++--.++ .+++| +.. ...++.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 6666667778899999983333 334444 447899999999999999954322 45554 322 111111
Q ss_pred EEec---------------------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 329 RLTE---------------------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 329 ~~~~---------------------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.+.+ -...+.+++.+|-...|++. .++.+.+|.+...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg----~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG----CGNKLVLFTLKYQ 165 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE----cCCEEEEEEEEEE
Confidence 1111 23466788888876667775 4789999987543
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=89.27 E-value=1.9 Score=27.99 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=26.0
Q ss_pred CcEEEEEEcCC-C--CEEEEEeCCCeEEEEECCC
Q 011916 210 DSVCSVQWTRE-G--SYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 210 ~~V~~v~~spd-g--~~la~g~~dg~v~iwd~~~ 240 (475)
+.|.+++|+|+ + ++|+.+-..|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46889999984 4 5888888889999999885
|
It contains a characteristic DLL sequence motif. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=89.19 E-value=6.8 Score=41.32 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=43.7
Q ss_pred CCCEEEEEeCCCcEEEEECCC---CCccEE-Eec---------------------CccCCEEEEEEcC----CCCEEEEE
Q 011916 260 NSRILSSGSRDRNILQHDLRV---SSDYIC-KLA---------------------GHKSEVCGLKWSH----DDRELASG 310 (475)
Q Consensus 260 ~~~~l~sgs~dg~I~iwd~~~---~~~~~~-~~~---------------------~h~~~V~~l~~s~----~~~~lasg 310 (475)
++..++.+..||.+....... .+.... ... .....+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 567777777888877776653 111111 110 0123455666666 67799999
Q ss_pred eCCCcEEEEECCCCceeEEE
Q 011916 311 GNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 311 ~~Dg~I~iwd~~~~~~~~~~ 330 (475)
+.|++|++||+.+++++...
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999986654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.84 E-value=24 Score=37.98 Aligned_cols=216 Identities=12% Similarity=0.200 Sum_probs=106.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC------CCCceEEEEeCC--CEEEEEeCCCcEEEEECCC
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG------HQTRAGVLAWNS--RILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~------h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~ 280 (475)
.+.|.+.+||.|.+.+++...+..|.+++-. ...+....- .-+.-..+.|.. ..+ - +..-..++.|...
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~-fd~ise~~L~~~dl~ef~khi~VgWgkketqf-r-gk~~raqlrdptm 188 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFDKY-FDPISEYHLKKSDLVEFGKHIRVGWGKKETQF-R-GKGARAQLRDPTM 188 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEecc-ccccchhhcchhHHHHhccceEeeecccchhc-c-ccchhhhccCCCC
Confidence 5678889999999988888888889888722 111111110 001112233321 000 0 0000111222111
Q ss_pred CCc----cEEEecCccCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEE
Q 011916 281 SSD----YICKLAGHKSEVCGLKWSHDDRELASGGND----NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 281 ~~~----~~~~~~~h~~~V~~l~~s~~~~~lasg~~D----g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
+.. .+..+..| =.-|.|-.|..+.+++... ..+++|.-. |..-..-....+.-..+.|-|.|..+++.
T Consensus 189 p~~vD~G~l~avd~~---k~~i~wrgD~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~LSWkpqgS~~ati 264 (1243)
T COG5290 189 PYMVDYGDLFAVDTN---KKIIFWRGDTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQLSWKPQGSKYATI 264 (1243)
T ss_pred cccccccceeEeeCC---ceEEEEccCcceeeecchhcccccceeeeccc-cccccccCCcccchhccccccCCceeeee
Confidence 000 01111111 1235566666666665432 235555422 11111111123333568999999966665
Q ss_pred ec--CCCCCeEEEEEC---CCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEE
Q 011916 353 GG--GTADRCIRFWNT---SNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLY 427 (475)
Q Consensus 353 g~--Gs~d~~I~iwd~---~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~ 427 (475)
++ .+....+.++.- +.|+.-........+..++|+-....++++ ..+.|.+|-..+........-.-..+..
T Consensus 265 ~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~---~~n~~~lwttkNyhWYLK~e~~ip~~s~ 341 (1243)
T COG5290 265 GTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA---EGNLLKLWTTKNYHWYLKVERQIPGISY 341 (1243)
T ss_pred ccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh---hcceEEEEEccceEEEEEEeecCCCcce
Confidence 42 111234556652 223332233344556777887777666663 4678999988776654444444455777
Q ss_pred EEECCCC
Q 011916 428 LATSPDG 434 (475)
Q Consensus 428 l~~spdg 434 (475)
+.|+|..
T Consensus 342 vkwhpe~ 348 (1243)
T COG5290 342 VKWHPEE 348 (1243)
T ss_pred eeecccc
Confidence 8888853
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=88.81 E-value=12 Score=36.39 Aligned_cols=83 Identities=13% Similarity=0.094 Sum_probs=45.7
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC----eEEEEECCCCeeeEE--ec-CCCC----ceEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG----QVQVWDGTQCKRVRT--FG-GHQT----RAGV 256 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg----~v~iwd~~~~~~~~~--~~-~h~~----~v~~ 256 (475)
..++.||..+.+...+..+.........+...++++.+.|+.++ .+.+||..+.+-... +. .+.. ....
T Consensus 139 ~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~ 218 (323)
T TIGR03548 139 NKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAAS 218 (323)
T ss_pred ceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeE
Confidence 46899999988876654332211122222334677888887654 356888877543221 11 0100 1222
Q ss_pred EEe-CCCEEEEEeCC
Q 011916 257 LAW-NSRILSSGSRD 270 (475)
Q Consensus 257 l~~-~~~~l~sgs~d 270 (475)
+.. ++.+++.|+.+
T Consensus 219 ~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 219 IKINESLLLCIGGFN 233 (323)
T ss_pred EEECCCEEEEECCcC
Confidence 333 56788888876
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=88.67 E-value=23 Score=41.31 Aligned_cols=96 Identities=14% Similarity=0.161 Sum_probs=60.7
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCC-----CCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCC------e--eeEE
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGP-----GDSVCSVQWTREGSY-ISVGTNLGQVQVWDGTQC------K--RVRT 246 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~-----~~~V~~v~~spdg~~-la~g~~dg~v~iwd~~~~------~--~~~~ 246 (475)
.|+...||.||- .++..+.-+.-++ -..+.+...+++|.. +.++.....+++|++... + ....
T Consensus 407 ~Ls~qgdG~lYA---k~~~~l~nLSs~~~~~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~ 483 (1774)
T PF11725_consen 407 SLSRQGDGKLYA---KDDDTLVNLSSGQMSEAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQ 483 (1774)
T ss_pred hhcccCCCceEe---cCCCceeecCCCCcchhhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeee
Confidence 566677787774 2222222111111 245677778889987 556666666799998653 1 1223
Q ss_pred ecCCCCceEEEEeCCCEEEEEeCCCcEEEEECC
Q 011916 247 FGGHQTRAGVLAWNSRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 247 ~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~ 279 (475)
+.+......++...++.|+++..+|.++.-++.
T Consensus 484 L~dG~a~A~~VgLs~drLFvADseGkLYsa~l~ 516 (1774)
T PF11725_consen 484 LADGKAQAQSVGLSNDRLFVADSEGKLYSADLP 516 (1774)
T ss_pred ccCCchhhhheeecCCeEEEEeCCCCEEecccc
Confidence 334444777788888889999999998887775
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=88.27 E-value=27 Score=34.19 Aligned_cols=92 Identities=15% Similarity=0.222 Sum_probs=45.4
Q ss_pred eEEEEECCCCeeeEE--ecC-CC---CceEEEEeCCCEEEEEeCC-----CcEEEEECCCCCccEE--Eec----CccCC
Q 011916 232 QVQVWDGTQCKRVRT--FGG-HQ---TRAGVLAWNSRILSSGSRD-----RNILQHDLRVSSDYIC--KLA----GHKSE 294 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~--~~~-h~---~~v~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~----~h~~~ 294 (475)
.+.+||+.+.+-... +.. .. .....+..++.+++.|+.+ ..+.+||.... .... .+. .....
T Consensus 51 ~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~~~~~~~~~~p~~R~ 129 (341)
T PLN02153 51 DLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN-EWTFLTKLDEEGGPEART 129 (341)
T ss_pred cEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC-EEEEeccCCCCCCCCCce
Confidence 466777666533221 110 01 1233455677888888754 25778887632 2211 110 00111
Q ss_pred EEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCc
Q 011916 295 VCGLKWSHDDRELASGGND-----------NQLLVWNQHSQQ 325 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~D-----------g~I~iwd~~~~~ 325 (475)
-.+++ .-++++++.|+.+ ..|.+||..+.+
T Consensus 130 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~ 170 (341)
T PLN02153 130 FHSMA-SDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK 170 (341)
T ss_pred eeEEE-EECCEEEEECCccCCCccCCCcccceEEEEECCCCe
Confidence 11222 2356677777753 247788887654
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=87.70 E-value=15 Score=30.52 Aligned_cols=114 Identities=18% Similarity=0.188 Sum_probs=70.6
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCc--------eeEEEeccccceeEEEECC----CCCcEEEEecCCCCCeEEEEEC
Q 011916 299 KWSHDDRELASGGNDNQLLVWNQHSQQ--------PTLRLTEHTAAVKAIAWSP----HQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 299 ~~s~~~~~lasg~~Dg~I~iwd~~~~~--------~~~~~~~h~~~v~~l~~sp----~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
+|......|++++.-|+|.|++..... .+..+ .-...|++|+--+ ++.-++..| ....|..||+
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliG---t~t~llaYDV 80 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIG---TQTSLLAYDV 80 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEe---ccceEEEEEc
Confidence 455555678888888999999876332 22222 3456677776543 334566666 4889999999
Q ss_pred CCCceeeeecCCCCeeEEEEcCC---CCeEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 367 SNGHQLNSVDTGSQVCNLAWSKN---VNELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~s~~---~~~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
.....+...+....+.++.+-.- ...++.+ | .+-.|.-||....+...+.
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~iv-G-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIV-G-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEE-C-ceEEEEEeCCCCcEEEEEe
Confidence 98877766666677777766431 2233332 3 3455666666555444433
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=87.61 E-value=12 Score=35.72 Aligned_cols=116 Identities=17% Similarity=0.284 Sum_probs=69.9
Q ss_pred CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe------CCCcEEEEECCCCceeEEEec-----cccceeE
Q 011916 271 RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG------NDNQLLVWNQHSQQPTLRLTE-----HTAAVKA 339 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~------~Dg~I~iwd~~~~~~~~~~~~-----h~~~v~~ 339 (475)
..|++||.. ..+....-.+-.+.|.+|.|..+.++++.|. ....+..||+.+..-. .+.. -.++|..
T Consensus 16 ~~lC~yd~~-~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTD-NSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECC-CCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence 468899987 4444444445677899999986666666664 3557888998876532 2222 2467888
Q ss_pred EEEC-CCCCcEEEEecC-CCCCeEEEEECCCCceeee--ecCCCCeeEEEEcC
Q 011916 340 IAWS-PHQSSLLASGGG-TADRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSK 388 (475)
Q Consensus 340 l~~s-p~~~~ll~sg~G-s~d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~ 388 (475)
+.+. .++..+.+.|.. ..+..|..||=.+...+.. +.....|..+.+-+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 8774 344446655431 1244577787655555544 22344566665443
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=86.64 E-value=36 Score=35.16 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=51.7
Q ss_pred CeEEEEECCCCcEEEEeeCC---CCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEEe-----cCCCCce
Q 011916 188 TCVYLWTASNSKVTRLCDLG---PGDSVCSVQWTREGSYISVGTNLG-----QVQVWDGTQCKRVRTF-----GGHQTRA 254 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~---~~~~V~~v~~spdg~~la~g~~dg-----~v~iwd~~~~~~~~~~-----~~h~~~v 254 (475)
+.++.+|..+.+..++.... ....-.++. .-++++++.|+.++ .+..||+.+.+-...- .......
T Consensus 244 ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~-~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~ 322 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMA-ADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGA 322 (470)
T ss_pred ccEEEEECCCCEEEEcCcCCCCCCCccceEEE-EECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCc
Confidence 46889999988776654321 111111222 23566777777543 4678887765433211 0111122
Q ss_pred EEEEeCCCEEEEEeCC----CcEEEEECCC
Q 011916 255 GVLAWNSRILSSGSRD----RNILQHDLRV 280 (475)
Q Consensus 255 ~~l~~~~~~l~sgs~d----g~I~iwd~~~ 280 (475)
.....++++++.++.+ ..+.+||+..
T Consensus 323 ~~~~~~gkiyviGG~~g~~~~dv~~yD~~t 352 (470)
T PLN02193 323 GLEVVQGKVWVVYGFNGCEVDDVHYYDPVQ 352 (470)
T ss_pred EEEEECCcEEEEECCCCCccCceEEEECCC
Confidence 3344577888888765 4588899873
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=86.53 E-value=8.2 Score=29.63 Aligned_cols=41 Identities=10% Similarity=-0.030 Sum_probs=30.7
Q ss_pred CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 356 TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
..+|.+.-||..+++....++.-.-...+++++++..++++
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 36789999999998876666555677899999999998885
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=86.05 E-value=38 Score=33.58 Aligned_cols=192 Identities=10% Similarity=0.065 Sum_probs=102.4
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEecCCC--CceEE-EEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc-CCE
Q 011916 220 EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ--TRAGV-LAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK-SEV 295 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~--~~v~~-l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-~~V 295 (475)
+| .+.++..+|.|.-.|.++++.+.....-. ..+.. +......|+.++.++.+..+|.+ .+..+-...... -.+
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~-~G~~~W~~~~~~~~~~ 145 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDAS-TGTLVWSRNVGGSPYY 145 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECC-CCcEEEEEecCCCeEE
Confidence 44 45566788888888888888664333211 11111 11123458888889988888886 455444444333 111
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccc---cceeEEEECCCCCcEEEEecCCC--CCeEEEEECCCCc
Q 011916 296 CGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHT---AAVKAIAWSPHQSSLLASGGGTA--DRCIRFWNTSNGH 370 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~---~~v~~l~~sp~~~~ll~sg~Gs~--d~~I~iwd~~~~~ 370 (475)
..-..-.++ .+..++.++.+...|..+++......... ..+..-....++. +++.. . ++.+.-.|..+|.
T Consensus 146 ~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~---~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 146 ASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGS---DGYDGILYALNAEDGT 220 (370)
T ss_pred ecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEec---CCCcceEEEEEccCCc
Confidence 111222233 44444477899999988888766644321 1111111122222 33321 3 5578888888888
Q ss_pred eeeeecCCCCeeE-----EEEcCCC-----CeEEEEEecCCCeEEEEECCCCceEEEecC
Q 011916 371 QLNSVDTGSQVCN-----LAWSKNV-----NELVSTHGYSQNQIMVWKYPSMAKVSTLTG 420 (475)
Q Consensus 371 ~~~~~~~~~~v~~-----l~~s~~~-----~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~ 420 (475)
..........+.. ......+ ..++. +..++.+...+..+++.+-....
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~--~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYA--GSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEECCcEEE--EecCCeEEEEEcCCCceEEEEec
Confidence 8777432211111 1111111 11122 45677788888888888777664
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=85.97 E-value=34 Score=32.96 Aligned_cols=228 Identities=8% Similarity=-0.001 Sum_probs=104.3
Q ss_pred CCCEEEEEeCCCeEEEEECCC--CeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCc-----------
Q 011916 220 EGSYISVGTNLGQVQVWDGTQ--CKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSD----------- 283 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~--~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~----------- 283 (475)
++++|+.|+++|...+ ++.. .+..+.+ +...|.++..- +-+++.++....++.+++..-..
T Consensus 12 ~~~~lL~GTe~Gly~~-~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~ 88 (302)
T smart00036 12 DGKWLLVGTEEGLYVL-NISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV 88 (302)
T ss_pred CCcEEEEEeCCceEEE-EcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence 4468999999995544 4554 3333333 45678888773 33444555555699999842110
Q ss_pred ---cEEEecCccCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCC--c--eeEEE---ec-cccceeEEEECCCC-CcEE
Q 011916 284 ---YICKLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQ--Q--PTLRL---TE-HTAAVKAIAWSPHQ-SSLL 350 (475)
Q Consensus 284 ---~~~~~~~h~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd~~~~--~--~~~~~---~~-h~~~v~~l~~sp~~-~~ll 350 (475)
......+|......+..... ...++++....+|.++..... + ....+ .. -..++..+..+++. ..-+
T Consensus 89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l 168 (302)
T smart00036 89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI 168 (302)
T ss_pred ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence 00112233332222233221 223444555567777654322 1 11110 00 11233333333332 2234
Q ss_pred EEecCCCCCeEEEEECCC--Cceee------eecCC-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC--CceEEEec
Q 011916 351 ASGGGTADRCIRFWNTSN--GHQLN------SVDTG-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--MAKVSTLT 419 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~--~~~~~------~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--~~~~~~l~ 419 (475)
+.|. ..+...++++.. ..... ..... .++....+ +++.+|++ + +....+.|... ......+.
T Consensus 169 cvG~--~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l-~~~e~Llc---~-~~~~v~Vn~~G~~~~r~~~l~ 241 (302)
T smart00036 169 CIGS--DKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQV-PRDEFLLC---Y-DEFGVFVNLYGKRRSRNPILH 241 (302)
T ss_pred EEEE--cCCCCeEEEEeecccccccccccccccccccCceEEEEE-CCCeEEEE---E-CcEEEEEeCCCCccccceEEE
Confidence 4442 222344444422 11000 00111 23333333 34444444 3 34444455443 11111222
Q ss_pred CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 420 GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 420 ~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
-...+.++++. ..+|+.-. +..|.|+++.++...+.+.
T Consensus 242 -w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~~l~q~i~ 279 (302)
T smart00036 242 -WEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTGELLQELA 279 (302)
T ss_pred -cCCcccEEEEE--CCEEEEEc-CCcEEEEECCCCceEEEEe
Confidence 23345667775 45676665 4559999999988766554
|
Unpublished observations. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=85.88 E-value=13 Score=34.52 Aligned_cols=145 Identities=7% Similarity=0.069 Sum_probs=0.0
Q ss_pred EEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEecCCCCceEEEEe--------
Q 011916 191 YLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN---LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-------- 259 (475)
Q Consensus 191 ~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-------- 259 (475)
.+||+.+++...+.. ..+--..+-.+-+||++|.+|+. ...+++++..+................=.|
T Consensus 49 ~~yD~~tn~~rpl~v-~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTV-QTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEecCCCcEEeccC-CCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Q ss_pred CCCEEEEEeCCC-cEEEEECCCCCccEEEe--------cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 260 NSRILSSGSRDR-NILQHDLRVSSDYICKL--------AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 260 ~~~~l~sgs~dg-~I~iwd~~~~~~~~~~~--------~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
||+.|+.|+.+. +...|.-+........+ .....----+...|+|++++.+..+..|. |..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~--d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY--DYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE--eCCCCeEEeeC
Q ss_pred ecccccee
Q 011916 331 TEHTAAVK 338 (475)
Q Consensus 331 ~~h~~~v~ 338 (475)
..-.+.++
T Consensus 206 P~lPg~~R 213 (243)
T PF07250_consen 206 PDLPGGPR 213 (243)
T ss_pred CCCCCCce
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=85.68 E-value=47 Score=34.29 Aligned_cols=146 Identities=12% Similarity=0.097 Sum_probs=70.2
Q ss_pred CCCEEEEEeCC-------CeEEEEECCCCeeeEEec-C-CC----CceEEEEeCCCEEEEEeCCC-----cEEEEECCCC
Q 011916 220 EGSYISVGTNL-------GQVQVWDGTQCKRVRTFG-G-HQ----TRAGVLAWNSRILSSGSRDR-----NILQHDLRVS 281 (475)
Q Consensus 220 dg~~la~g~~d-------g~v~iwd~~~~~~~~~~~-~-h~----~~v~~l~~~~~~l~sgs~dg-----~I~iwd~~~~ 281 (475)
++.+++.|+.+ ..+.+||+.+.+-...-. + .. .....+..++.+++.|+.++ .+.++|+..
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t- 253 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTT- 253 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCC-
Confidence 45566666643 247788887754332110 1 10 12233445677778887653 577888873
Q ss_pred CccEEEecC-----ccCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEe-----ccccceeEEEECCCC
Q 011916 282 SDYICKLAG-----HKSEVCGLKWSHDDRELASGGNDN-----QLLVWNQHSQQPTLRLT-----EHTAAVKAIAWSPHQ 346 (475)
Q Consensus 282 ~~~~~~~~~-----h~~~V~~l~~s~~~~~lasg~~Dg-----~I~iwd~~~~~~~~~~~-----~h~~~v~~l~~sp~~ 346 (475)
.... .+.. ....-.++.. -++++++.|+.++ .+..||+.+.+-...-. ........+.+ ++
T Consensus 254 ~~W~-~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~--~g 329 (470)
T PLN02193 254 NEWK-LLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV--QG 329 (470)
T ss_pred CEEE-EcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE--CC
Confidence 2221 1111 1111112222 2566777776543 46778877654321100 00111111222 34
Q ss_pred CcEEEEecCC--CCCeEEEEECCCCce
Q 011916 347 SSLLASGGGT--ADRCIRFWNTSNGHQ 371 (475)
Q Consensus 347 ~~ll~sg~Gs--~d~~I~iwd~~~~~~ 371 (475)
+ +++.++.. .-..+.+||+.+.+-
T Consensus 330 k-iyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 330 K-VWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred c-EEEEECCCCCccCceEEEECCCCEE
Confidence 4 66665411 125689999887653
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=85.35 E-value=39 Score=33.08 Aligned_cols=82 Identities=12% Similarity=0.060 Sum_probs=40.9
Q ss_pred CeEEEEECC--CCcEEEEeeCCC-CCcEEEEEEcCCCCEEEEEeCC-----------CeEEEEECCCCeeeEEe-c--CC
Q 011916 188 TCVYLWTAS--NSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTNL-----------GQVQVWDGTQCKRVRTF-G--GH 250 (475)
Q Consensus 188 ~~V~lw~~~--~~~~~~~~~~~~-~~~V~~v~~spdg~~la~g~~d-----------g~v~iwd~~~~~~~~~~-~--~h 250 (475)
..++.+|+. +.+...+..+.. ...-.+++ .-++++.++|+.+ ..+..||..+.+-...- . ..
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~-~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~ 107 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAA-AIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG 107 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEE-EECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc
Confidence 567778863 333444433321 11111222 2367777787753 24777887765433321 1 11
Q ss_pred CCceEEE-EeCCCEEEEEeCC
Q 011916 251 QTRAGVL-AWNSRILSSGSRD 270 (475)
Q Consensus 251 ~~~v~~l-~~~~~~l~sgs~d 270 (475)
......+ ..++++.+.|+.+
T Consensus 108 ~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 108 LLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred ccceeEEEEeCCEEEEEcCcC
Confidence 1112223 3577888888764
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.29 E-value=23 Score=40.10 Aligned_cols=73 Identities=10% Similarity=0.032 Sum_probs=42.6
Q ss_pred ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 332 EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 332 ~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
.+..++.+..+.......+.. .-+.+.+|+.........+...+... ++++..+++ +..||.+.+||...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~--~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 196 LIEYESLQVLYYSPTKILIGF----NRGLVVIKDRASKYVQSAYLPNGQLE----SRDGSHFVS--YHTDGSYAFWDVSS 265 (993)
T ss_pred ccccccceeeeecCCCcceee----eeeeeeehhcccccchhhcccccccC----ccCCceEEE--EEecCCEEeeecCC
Confidence 345555555554444433332 45666666655444433332222111 777888888 77899999999887
Q ss_pred Cce
Q 011916 412 MAK 414 (475)
Q Consensus 412 ~~~ 414 (475)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 644
|
|
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.23 E-value=51 Score=34.28 Aligned_cols=285 Identities=16% Similarity=0.088 Sum_probs=138.0
Q ss_pred eccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 159 VLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 159 ~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
++..+....|..++.+.-+-+.-+-+|.+..|++.+.++.+.......-..+.|..+.=..+| ++.+|+.+|..+.--.
T Consensus 196 alql~s~~~dk~I~al~~d~qg~LWVGTdqGv~~~e~~G~~~sn~~~~lp~~~I~ll~qD~qG-~lWiGTenGl~r~~l~ 274 (671)
T COG3292 196 ALQLASPPLDKAINALIADVQGRLWVGTDQGVYLQEAEGWRASNWGPMLPSGNILLLVQDAQG-ELWIGTENGLWRTRLP 274 (671)
T ss_pred EEEcCCCcchhhHHHHHHHhcCcEEEEeccceEEEchhhccccccCCCCcchheeeeecccCC-CEEEeecccceeEecC
Confidence 344443344444444544445567777888889998887554444332334555555444444 5788888775543322
Q ss_pred CCCeeeEEecCCC--CceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCC-EEEEEEcC--CCCEEEEEeC
Q 011916 239 TQCKRVRTFGGHQ--TRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSE-VCGLKWSH--DDRELASGGN 312 (475)
Q Consensus 239 ~~~~~~~~~~~h~--~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~s~--~~~~lasg~~ 312 (475)
..+-.....+.|. ..|..+.-| ..-|-+++.+|.+.+-+-. ......+....+. +..++.+| .+..+-....
T Consensus 275 rq~Lq~~~~~~~l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a~--w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns 352 (671)
T COG3292 275 RQGLQIPLSKMHLGVSTVNSLWLDTDGSLWVGTYGGIVRYLTAD--WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS 352 (671)
T ss_pred CCCccccccccCCccccccceeeccCCCEeeeccCceEEEecch--hhheeeeecCCCchhhhhccCchhcccceeeccc
Confidence 2222222222232 234444444 3456666666665554332 1111111111111 11111111 1112222222
Q ss_pred CCcEEEEECCCCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-Cceeeeec--CCCCeeEEEEcC
Q 011916 313 DNQLLVWNQHSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVD--TGSQVCNLAWSK 388 (475)
Q Consensus 313 Dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~--~~~~v~~l~~s~ 388 (475)
-|.+.+-+-.++..+..... ....|+.+.+..++..-+.+ ..+-+..|+..+ +..+.... ..+.|+.+.=.|
T Consensus 353 ~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs----~q~GLsrl~n~n~~avlde~agl~ss~V~aived~ 428 (671)
T COG3292 353 IGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGS----MQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDP 428 (671)
T ss_pred cceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEe----cccchhhhccCCcccccccccCCcccceeeeeecC
Confidence 23344444444544433221 23445666666655533332 454566666666 44444432 457788888899
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCceEEEec--C---CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 389 NVNELVSTHGYSQNQIMVWKYPSMAKVSTLT--G---HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 389 ~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+++ |.. |..+|.++. +.+.++....+. . ....|..+.+.++|+.-+. +.+| |..|+-.....
T Consensus 429 dns-LWI--GTs~Glvk~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a-~g~g-va~~~sq~~~~ 495 (671)
T COG3292 429 DNS-LWI--GTSGGLVKR-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLA-AGSG-VAAWESQRRMF 495 (671)
T ss_pred CCC-EEE--eccCCeEec-CccccchhcccccccCcCCcchhhhhccCCCCceEEE-ecce-eeeecccccee
Confidence 988 444 666765543 323322222221 1 2344677888899875443 3344 56776554433
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.15 E-value=1.4 Score=47.45 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=27.5
Q ss_pred EEEEEEcC---CCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEEC
Q 011916 295 VCGLKWSH---DDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 295 V~~l~~s~---~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~s 343 (475)
+.-+.|.| +.-++..+-.++.|++..+..... ..+..|...+..++|-
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~ 233 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFF 233 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHH
Confidence 34445554 556777777778877766554322 2334466666665543
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=85.15 E-value=8.7 Score=40.50 Aligned_cols=72 Identities=10% Similarity=0.083 Sum_probs=44.0
Q ss_pred CCCCEEEEEcCCeEEEEECCC----CcEEEEeeCC---------------------CCCcEEEEEEcC----CCCEEEEE
Q 011916 177 SSQNVLAVGLGTCVYLWTASN----SKVTRLCDLG---------------------PGDSVCSVQWTR----EGSYISVG 227 (475)
Q Consensus 177 s~~~~la~~~~~~V~lw~~~~----~~~~~~~~~~---------------------~~~~V~~v~~sp----dg~~la~g 227 (475)
++..++.+..+|.+....... +......... ....+..++++. +..+|++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 455677777788777766553 2221111111 123456666766 77899999
Q ss_pred eCCCeEEEEECCCCeeeEEec
Q 011916 228 TNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 228 ~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.|+++++||+.+++++.++.
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEec
Confidence 999999999999999977654
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.46 E-value=14 Score=41.86 Aligned_cols=142 Identities=11% Similarity=0.135 Sum_probs=82.5
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEc--------CCCCEEEEEeCCCeEEEEECCCCeee-------
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWT--------REGSYISVGTNLGQVQVWDGTQCKRV------- 244 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~s--------pdg~~la~g~~dg~v~iwd~~~~~~~------- 244 (475)
+-+=.+-|+.+++|+.+++.....++ +....|..|..- |.=+++.+-+.--.|.|+-+.-.+..
T Consensus 91 ~RaWiTiDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~ 169 (1311)
T KOG1900|consen 91 GRAWITIDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFN 169 (1311)
T ss_pred cceEEEeCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccc
Confidence 44556779999999999965555554 444556555532 22234444333345666654321111
Q ss_pred --EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC----c-----------------cEEEec-CccCCEEEE
Q 011916 245 --RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS----D-----------------YICKLA-GHKSEVCGL 298 (475)
Q Consensus 245 --~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~----~-----------------~~~~~~-~h~~~V~~l 298 (475)
-++......|.|+.. +|++++ +|+||.|.-.-..... . .+..+. .+..+|..|
T Consensus 170 ~~~~i~~dg~~V~~I~~t~nGRIF~-~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi 248 (1311)
T KOG1900|consen 170 TSFKISVDGVSVNCITYTENGRIFF-AGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQI 248 (1311)
T ss_pred cceeeecCCceEEEEEeccCCcEEE-eecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceee
Confidence 111223456778875 455555 4556644322111110 0 011223 567789999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 299 KWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 299 ~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.....-+.+.+-+..++|.+||+..
T Consensus 249 ~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 249 TIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EeccccceeeeeccCceEEEEEccC
Confidence 9988888999999999999999975
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=84.42 E-value=22 Score=29.50 Aligned_cols=111 Identities=13% Similarity=0.138 Sum_probs=66.6
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCe--------eeEEecCCCCceEEEEe---C----CCEEEEEeCCCcEEEEEC
Q 011916 214 SVQWTREGSYISVGTNLGQVQVWDGTQCK--------RVRTFGGHQTRAGVLAW---N----SRILSSGSRDRNILQHDL 278 (475)
Q Consensus 214 ~v~~spdg~~la~g~~dg~v~iwd~~~~~--------~~~~~~~h~~~v~~l~~---~----~~~l~sgs~dg~I~iwd~ 278 (475)
.-.|......|++++.-|.|.|++..... .+..+. -...|++|+- . .+.|+.|+ ...+..||+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 34566666789999999999999876432 223332 3456666654 2 35666665 467899999
Q ss_pred CCCCccEEEecCccCCEEEEEEcC----CCCEEEEEeCCCcEEEEECCCCceeEE
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSH----DDRELASGGNDNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~----~~~~lasg~~Dg~I~iwd~~~~~~~~~ 329 (475)
........ +.-...|.++.+-. +..++++|+ ...|.-||....+...+
T Consensus 81 ~~N~d~Fy--ke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~fWt 132 (136)
T PF14781_consen 81 ENNSDLFY--KEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIFWT 132 (136)
T ss_pred ccCchhhh--hhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEEEE
Confidence 85443322 22335577776632 233455554 46777777665554444
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=84.07 E-value=5.9 Score=24.98 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=28.6
Q ss_pred CCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEE
Q 011916 388 KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
|+++.|+++ ...++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~-~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVT-NSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEE-eCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 567777775 456889999999998888777653 22334444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=83.88 E-value=25 Score=33.46 Aligned_cols=88 Identities=17% Similarity=0.352 Sum_probs=57.0
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEECCCCeeeEEecC-----CCCceEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT------NLGQVQVWDGTQCKRVRTFGG-----HQTRAGV 256 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~------~dg~v~iwd~~~~~~~~~~~~-----h~~~v~~ 256 (475)
..|++||..+.+....-. +-.+.|+++.|..+.++++.|. ....+..||..+..-. .+.+ -.+.|..
T Consensus 16 ~~lC~yd~~~~qW~~~g~-~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipgpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGN-GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPGPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCC-CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCCcEEE
Confidence 469999999888766654 4568999999997777777764 3456888998776432 2332 2467888
Q ss_pred EEe---CC-CEEEEEe-CCCc--EEEEE
Q 011916 257 LAW---NS-RILSSGS-RDRN--ILQHD 277 (475)
Q Consensus 257 l~~---~~-~~l~sgs-~dg~--I~iwd 277 (475)
+.+ +. ++.+.|. .++. |..||
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEc
Confidence 877 44 3444443 3333 44444
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=83.30 E-value=4.2 Score=25.40 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=22.6
Q ss_pred EeccccceeEEEECCCCCcEEEEecCCCC--CeEEEE
Q 011916 330 LTEHTAAVKAIAWSPHQSSLLASGGGTAD--RCIRFW 364 (475)
Q Consensus 330 ~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d--~~I~iw 364 (475)
+......-....|+|||+.|+.+.. .+ |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~--~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSN--RNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEE--CT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEec--CCCCCCcCEE
Confidence 3445566788999999999988875 55 655555
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=82.88 E-value=82 Score=34.84 Aligned_cols=111 Identities=17% Similarity=0.269 Sum_probs=75.2
Q ss_pred CCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC----ceeEEEe-cc----------ccceeEEEECCCCCcEEEEecCC
Q 011916 293 SEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ----QPTLRLT-EH----------TAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 293 ~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~----~~~~~~~-~h----------~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
.+...++|+| +...||+....|...|||+... .....+. .+ ...-..|.|.++...|+++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~---- 221 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVC---- 221 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEE----
Confidence 3577899998 6669999999999999999211 1111111 11 1334588998888878886
Q ss_pred CCCeEEEEECCCCceee---eecCCCCeeEEEEcCC--CCeEEEEEecCCCeEEEEECCC
Q 011916 357 ADRCIRFWNTSNGHQLN---SVDTGSQVCNLAWSKN--VNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~~~---~~~~~~~v~~l~~s~~--~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
....+.++|+.+..... .-.....|..+.-++. +..++. ....|...++..
T Consensus 222 ~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL----Ts~eiiw~~~~~ 277 (765)
T PF10214_consen 222 NRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL----TSKEIIWLDVKS 277 (765)
T ss_pred cCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE----ecCeEEEEEccC
Confidence 57899999999876633 2234567888888887 333333 246677778765
|
These proteins are found in fungi. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 475 | ||||
| 4ggd_A | 431 | Structural Analysis Of Human Cdc20 Supports Multisi | 1e-92 | ||
| 4gga_A | 420 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-92 | ||
| 4ggc_A | 318 | Structural Analysis Of Human Cdc20 Supports Multi-S | 1e-91 | ||
| 4aez_A | 401 | Crystal Structure Of Mitotic Checkpoint Complex Len | 6e-83 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-17 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-13 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-11 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 2e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-11 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 2e-04 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 9e-11 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-10 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 2e-04 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 1e-10 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-04 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 2e-10 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 2e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 3e-08 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 3e-10 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 4e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 4e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-08 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-08 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 5e-10 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-08 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 4e-08 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 5e-10 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-08 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 5e-10 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-08 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 5e-10 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 6e-10 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 4e-08 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 6e-10 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 4e-08 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 6e-10 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-08 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 6e-10 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-08 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 6e-10 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-08 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 7e-10 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-08 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 7e-10 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-08 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 8e-10 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-08 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 8e-10 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 4e-08 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-09 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 7e-09 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 1e-08 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-08 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 2e-08 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 2e-08 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 3e-08 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 3e-08 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 3e-08 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 4e-08 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 4e-08 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 4e-08 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 4e-08 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 4e-08 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 4e-08 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 4e-08 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 5e-08 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 9e-08 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 9e-08 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 1e-07 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 2e-07 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 2e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 2e-06 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 2e-06 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 3e-06 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 1e-05 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 6e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-05 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 1e-05 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 1e-05 | ||
| 1gxr_A | 337 | Wd40 Region Of Human Groucho/tle1 Length = 337 | 2e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 2e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 2e-05 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 2e-05 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 3e-05 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 5e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 8e-05 | ||
| 3ow8_A | 321 | Crystal Structure Of The Wd Repeat-Containing Prote | 2e-04 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 2e-04 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 8e-04 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 3e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 4e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 4e-04 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 5e-04 |
| >pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431 | Back alignment and structure |
|
| >pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420 | Back alignment and structure |
|
| >pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318 | Back alignment and structure |
|
| >pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.98 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.98 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.98 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.94 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.94 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.94 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.94 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.93 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.92 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.92 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.91 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.9 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.9 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.9 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.9 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.89 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.88 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.88 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.88 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.88 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.87 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.87 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.87 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.87 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.83 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.82 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.82 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.81 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.8 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.8 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.79 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.78 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.78 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.76 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.76 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.76 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.76 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.75 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.75 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.74 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.73 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.72 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.71 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.7 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.7 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.69 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.69 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.69 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.68 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.67 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.65 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.65 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.65 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.64 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.64 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.62 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.61 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.6 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.6 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.6 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.59 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.58 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.58 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.56 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.55 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.54 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.54 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.54 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.53 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.5 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.49 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.49 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.48 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.47 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.45 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.45 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.42 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.42 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.41 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.4 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.39 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.35 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.35 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.34 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.31 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.3 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.29 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.28 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.27 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.27 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.26 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.25 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.24 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.24 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.24 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.24 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.2 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.2 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.17 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.15 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.13 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.11 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.11 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.05 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.04 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.03 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.02 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.0 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.98 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.97 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.95 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.93 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.93 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.92 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.9 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.9 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.89 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.89 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.88 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.87 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.87 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.87 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.87 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.87 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.83 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.81 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.76 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.75 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.69 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.67 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.66 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.66 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.65 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.61 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.59 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.55 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.55 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.54 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.53 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.52 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.51 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.49 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.45 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.44 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.42 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.42 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.41 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.41 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.41 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.38 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 98.31 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.29 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.21 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.2 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.17 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.16 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.13 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.13 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.11 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.1 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.07 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.02 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.89 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 97.88 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.88 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 97.79 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.77 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.71 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.7 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.69 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.65 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.63 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.58 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.57 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.56 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.55 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.54 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.48 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.46 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.42 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.41 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.36 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.35 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.34 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.33 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.24 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.24 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.24 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.2 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.04 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.01 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.99 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.94 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.88 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.85 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.8 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.71 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.68 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.66 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.66 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.52 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.47 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 96.3 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.2 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.09 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.07 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.0 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.87 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.75 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.3 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.06 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.02 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 94.13 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.51 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 90.13 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 88.5 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 88.39 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 85.33 | |
| 2rqw_B | 26 | 24-meric peptide from serine/threonine-protein KI | 83.98 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 83.6 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 83.04 | |
| 3mvd_K | 423 | Regulator of chromosome condensation; protein-DNA | 80.45 |
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-59 Score=474.81 Aligned_cols=391 Identities=45% Similarity=0.817 Sum_probs=294.4
Q ss_pred CCCCCcCc--cccccccCCCC--CCCCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCC
Q 011916 53 PCRSSSRL--HTFELIEKGSP--VKEGGNEAYNRLLKSELFGADFGSFSSPAGQGSPMSPSKNMLRFKTDHSSGPNSPYS 128 (475)
Q Consensus 53 p~r~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 128 (475)
|+|++|++ ++|.+..+... .....+.+|+..++..+.+.+. ...+||.|+.+++..+. .+.
T Consensus 2 p~r~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~il~~~~~~~~~~~-~~~ 66 (420)
T 4gga_A 2 PHRSAAQMEVASFLLSKENQPENSQTPTKKEHQKAWALNLNGFDV--------------EEAKILRLSGKPQNAPE-GYQ 66 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCchhhhhccccccCCcccccCcchHHHHHHHHhhcccccc--------------ccceEEeccCCCCCCCc-ccc
Confidence 89999988 78888553322 1223456788888777765443 24589999876553322 121
Q ss_pred CCc-cCCCCCCcccCCCCCCCCCcCCCCCceeccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeC-
Q 011916 129 PSI-LGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL- 206 (475)
Q Consensus 129 ~~~-~~~~~~~~~~~~~~~~~~r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~- 206 (475)
... +-... ......+.+..|++|..|+++|+||++.+|||+++|+||++++||+|.|++|+|||+.+++..+++.+
T Consensus 67 ~~~~~~~~~--~~~~~~~~~~~r~i~~~p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgld~tV~lWd~~tg~~~~~~~~~ 144 (420)
T 4gga_A 67 NRLKVLYSQ--KATPGSSRKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQME 144 (420)
T ss_dssp ---------------------CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECC
T ss_pred cCcceeccc--ccCCCCccCCCcccCCCCceEEECCCCcccccceeEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEec
Confidence 111 11100 12234566778999999999999999999999999999999999999999999999999999988876
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
+|...|++|+|+|+|++||+|+.||.|+|||+.+++.+..+.+|...+.+++|++.+|++|+.|+.+.+||.+.....+.
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~ 224 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVA 224 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeE
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999997788888
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc----eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ----PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~----~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
.+.+|...++.+.|+++++++++++.|+.|++||...++ .+.....|...|.+++|+|++..++++++|+.|++|+
T Consensus 225 ~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~ 304 (420)
T 4gga_A 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 304 (420)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEE
T ss_pred EecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEE
Confidence 899999999999999999999999999999999998765 3567778999999999999999999988788999999
Q ss_pred EEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 363 FWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 363 iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
+||+.+++++..+.....+.++.|+++++.+++++|+.|+.|+|||+++++++.++.+|.+.|++|+|+|||++|+||+.
T Consensus 305 iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 305 IWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 384 (420)
T ss_dssp EEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred EEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCCc
Q 011916 443 DETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 443 Dg~I~iW~~~~~~~~~~~ 460 (475)
|++|+|||++........
T Consensus 385 D~tvriWdv~~~~~~~~~ 402 (420)
T 4gga_A 385 DETLRLWRCFELDPARRR 402 (420)
T ss_dssp TTEEEEECCSCSSCC---
T ss_pred CCeEEEEECCCCCccchh
Confidence 999999999876655443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-55 Score=438.99 Aligned_cols=385 Identities=41% Similarity=0.741 Sum_probs=300.0
Q ss_pred CcccCCCCCcCccccccccCCCCCCCCcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCCCCCCC
Q 011916 49 DRFIPCRSSSRLHTFELIEKGSPVKEGGNEAYNRLLKSELFGADFGSFSSPAGQGSPMSPSKNMLRFKTDHSSGPNSPYS 128 (475)
Q Consensus 49 drfip~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 128 (475)
|||||+|+.+|.+.|+++... ....|+..|++.+.-. ...++|.|...++... .+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~----------------~~~r~l~~~~~~~~~~-~~~~ 57 (401)
T 4aez_A 1 DRFIPSRPNTANAFVNSISSD------VPFDYSESVAEACGFD----------------LNTRVLAFKLDAPEAK-KPVD 57 (401)
T ss_dssp -----------------------------------------------------------CCEEEEEECSCCCCCC-CCCC
T ss_pred CCcCCCchhhhHHHHhhcCCc------chHHHHHHHHHHcCCC----------------ccCcEEeeCCCCCCCc-Cccc
Confidence 899999997777899995432 2346888887777422 1458999877654221 1110
Q ss_pred CCccCCCCCCcccCCCCCCCCCcCCCCCceeccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCC
Q 011916 129 PSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGP 208 (475)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~ 208 (475)
+..... .......++..|.+|..|++++++|++.+++++++++|+++.+++++.++.|++|++.+++....+...|
T Consensus 58 ---~~~~~~-~~~~~~~~~~~r~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~ 133 (401)
T 4aez_A 58 ---LRTQHN-RPQRPVVTPAKRRFNTTPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDE 133 (401)
T ss_dssp ---------------------CCCCCSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCT
T ss_pred ---chhhcc-cccCCccccccCcCCCCcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCC
Confidence 110000 0111122445799999999999999999999999999999999999999999999999999998888778
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEe
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 288 (475)
...|.+++|+|++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++++|++|+.||.|++||++.....+..+
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 213 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTL 213 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999777788889
Q ss_pred cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 289 AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
.+|...|.+++|+|++++|++|+.|+.|++||+++++++..+..|...|.+++|+|++..++++++|+.|+.|++||+.+
T Consensus 214 ~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 214 QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT 293 (401)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT
T ss_pred cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998777899999999999
Q ss_pred CceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEecCCCcceEEEEECCCCCEEEEEeCCCCE
Q 011916 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK--VSTLTGHSLRVLYLATSPDGQTIVTGAGDETL 446 (475)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I 446 (475)
++++..+.+...+.+++|+|+++++++++|+.+|.|++||+.+++. ...+.+|...|.+++|+|+|.+|++++.||.|
T Consensus 294 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i 373 (401)
T 4aez_A 294 GARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENL 373 (401)
T ss_dssp CCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEE
T ss_pred CCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 9999999999999999999999999998788999999999998654 44577999999999999999999999999999
Q ss_pred EEEecCCCCCCCCc
Q 011916 447 RFWNVFPSLKAPAL 460 (475)
Q Consensus 447 ~iW~~~~~~~~~~~ 460 (475)
++|++..+......
T Consensus 374 ~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 374 KFWRVYDGDHVKRP 387 (401)
T ss_dssp EEEECCC-------
T ss_pred EEEECCCCcccccc
Confidence 99999988876654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-50 Score=388.06 Aligned_cols=310 Identities=51% Similarity=0.942 Sum_probs=288.6
Q ss_pred CCCCCcCCCCCceeccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEE
Q 011916 146 PKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYI 224 (475)
Q Consensus 146 ~~~~r~~~~~p~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~l 224 (475)
++..|.+|..|+++|+||++.+|||+++|+||++++||+|.|++|+|||+.+++..+.+.. +|...|++++|+|++++|
T Consensus 3 ~~~~r~~p~~p~rvldap~~~~d~y~~~l~WS~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l 82 (318)
T 4ggc_A 3 RKTCRYIPSLPDRILDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYL 82 (318)
T ss_dssp ---CCCCCSSCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEE
T ss_pred CCCCcccCCCCCEEeeCCCCcccccceEEEECCCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEE
Confidence 3557999999999999999999999999999999999999999999999999999888765 577899999999999999
Q ss_pred EEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC
Q 011916 225 SVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD 304 (475)
Q Consensus 225 a~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~ 304 (475)
|+|+.||+|++||+++++.+..+.+|...+.++.+++.++++|+.++.+.+|+.......+..+.+|...+..+.+++++
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG 162 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999997778888899999999999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCce----eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCC
Q 011916 305 RELASGGNDNQLLVWNQHSQQP----TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ 380 (475)
Q Consensus 305 ~~lasg~~Dg~I~iwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~ 380 (475)
++|++++.|+.|++||+++++. ......+.+.|.+++++|++..++..++|+.++.|++||...........+...
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~ 242 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ 242 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSC
T ss_pred CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceee
Confidence 9999999999999999987653 455667889999999999998888776677999999999999999999999999
Q ss_pred eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 381 VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+..+.|+++++.+++++|..|+.|++||+.+++.+.++.+|.+.|++|+|+|||++|+||+.||+|+|||++..+
T Consensus 243 v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 243 VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred eeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 999999999999999878899999999999999999999999999999999999999999999999999998654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=339.10 Aligned_cols=281 Identities=19% Similarity=0.312 Sum_probs=253.9
Q ss_pred CCCCceeEEecCCC------CEEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 166 QDDFYLNLVDWSSQ------NVLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 166 ~~d~~v~~l~ws~~------~~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
.++-.|.+++|+++ .+++++.|+.|+||++.+++......+ +|...|.+++|++++.++++|+.||+|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 35567899999863 377778899999999988765443322 89999999999999999999999999999999
Q ss_pred CCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 239 TQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 239 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
.+++.+..+..|...+.+++|+ +++|++|+.||.|++||++ .+.....+..|...|.+++|+|++++||+|+.|+.|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~-~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i 188 (321)
T 3ow8_A 110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE-SGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGII 188 (321)
T ss_dssp TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT-TCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC-CCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeE
Confidence 9999999999999999999994 6899999999999999998 556677788899999999999999999999999999
Q ss_pred EEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEE
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~ 395 (475)
++||+++++.+..+.+|...|.+++|+|++.. +++++ .|+.|++||+++++.+..+. +...|.+++|+|++++|++
T Consensus 189 ~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 189 NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL-LVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp EEEETTTTEEEEEECCCSSCCCEEEECTTSCE-EEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCCcEEEEEcccCCceeEEEEcCCCCE-EEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEE
Confidence 99999999999999999999999999999984 55554 89999999999999888875 6678999999999999998
Q ss_pred EEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
++.|+.|++||+.+++.+.++.+|...|.+++|+|++.+|++++.||+|++||+.
T Consensus 266 --~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 266 --SSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp --EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred --EeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 8899999999999999999999999999999999999999999999999999963
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=338.59 Aligned_cols=276 Identities=19% Similarity=0.364 Sum_probs=251.2
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---- 241 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---- 241 (475)
.-.|.+++|+++ .+++++.|+.|+|||..+++....+. .|...|.+++|+|+|++|++|+.||.|++|++.+.
T Consensus 55 ~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~ 133 (340)
T 1got_B 55 LAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNV 133 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSC
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcc
Confidence 345889999987 46677779999999999999887776 67889999999999999999999999999999865
Q ss_pred eeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 242 KRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 242 ~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
+....+.+|...|.++.|. +..+++++.|++|++||++ .+..+..+.+|...|.+++|+|++++|++|+.|+.|++||
T Consensus 134 ~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE-TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWD 212 (340)
T ss_dssp EEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECC-CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 4566788999999999994 5679999999999999998 6677888999999999999999999999999999999999
Q ss_pred CCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEEEE
Q 011916 321 QHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 321 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~ 397 (475)
++++..+..+.+|...|.+++|+|++..++ +++ .|+.|++||+++++.+..+.+. ..|.+++|+|++++|++
T Consensus 213 ~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~-s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-- 287 (340)
T 1got_B 213 VREGMCRQTFTGHESDINAICFFPNGNAFA-TGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-- 287 (340)
T ss_dssp TTTCSEEEEECCCSSCEEEEEECTTSSEEE-EEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE--
T ss_pred CCCCeeEEEEcCCcCCEEEEEEcCCCCEEE-EEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEE--
Confidence 999999999999999999999999998555 444 8999999999999888877644 36999999999999999
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
|+.|+.|++||+.+++.+..+.+|...|.+++|+|||.+|++|+.|++|+|||
T Consensus 288 g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 288 GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 88999999999999999999999999999999999999999999999999997
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=353.19 Aligned_cols=280 Identities=22% Similarity=0.379 Sum_probs=256.5
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+.-.|++++|+|+ .+++++.|+.|+|||+.+++....+. +|.+.|.+++|+|+|++|++|+.||+|+|||+.+++++
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~ 185 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 185 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 3456899999996 46666779999999999999887776 79999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 245 RTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
..+.+|...|.+++|+ +++|++|+.|++|++||++ .+..+..+.+|...|.++.|++++.+|++|+.|+.|++||+.
T Consensus 186 ~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~-~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~ 264 (410)
T 1vyh_C 186 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 264 (410)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence 9999999999999994 6899999999999999998 567788899999999999999999999999999999999999
Q ss_pred CCceeEEEeccccceeEEEECCCCC-------------------cEEEEecCCCCCeEEEEECCCCceeeeec-CCCCee
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQS-------------------SLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVC 382 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~-------------------~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~ 382 (475)
+++....+..|...|.+++|+|++. .++++|+ .|+.|++||+.++.++..+. |...|.
T Consensus 265 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h~~~v~ 342 (410)
T 1vyh_C 265 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVR 342 (410)
T ss_dssp TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred CCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--CCCeEEEEECCCCceEEEEECCCCcEE
Confidence 9999999999999999999999732 2566655 89999999999999988875 677899
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+++|+|++++|++ |+.|+.|++||+.+++.+..+.+|...|++++|+|++.+|++|+.||+|+||++.
T Consensus 343 ~v~~~~~g~~l~s--~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 343 GVLFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp EEEECSSSSCEEE--EETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred EEEEcCCCCEEEE--EeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 9999999999998 8899999999999999999999999999999999999999999999999999863
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=328.00 Aligned_cols=277 Identities=22% Similarity=0.365 Sum_probs=248.0
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--- 241 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--- 241 (475)
+.-.|++++|+++ .+++++.|+.|+|||..+++....+. .|...|.+++|+|+|.+|++|+.|+.+++|++...
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVT-MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEe-cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 3446899999987 47777889999999999998877776 57788999999999999999999999999998643
Q ss_pred ---eeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC--CCCEEEEEeCCC
Q 011916 242 ---KRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH--DDRELASGGNDN 314 (475)
Q Consensus 242 ---~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~--~~~~lasg~~Dg 314 (475)
.....+.+|...|.+++|. +..|++++.|++|++||++ .+..+..+.+|...|.+++|+| ++++|++|+.|+
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg 220 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVE-SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK 220 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTS
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCC
Confidence 3456677899999999995 5799999999999999998 5677888999999999999988 578999999999
Q ss_pred cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeeEEEEcCCCC
Q 011916 315 QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVN 391 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~ 391 (475)
.|++||+++++++..+..|...|.+++|+|++.. +++++ .|+.|++||+++++.+..+... ..+.+++|+|++.
T Consensus 221 ~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 221 KAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA-FASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR 297 (354)
T ss_dssp CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred eEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCE-EEEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC
Confidence 9999999999999999999999999999999985 45544 8999999999998877766433 4688999999999
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
+|++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|||++|++|+.|++|+||+
T Consensus 298 ~l~~--g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 298 LLFA--GYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEE--EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEE--EECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 9999 88999999999999999999999999999999999999999999999999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-40 Score=321.96 Aligned_cols=279 Identities=23% Similarity=0.371 Sum_probs=245.1
Q ss_pred CCCceeEEecCCC--C-EEEEEcCCeEEEEECCCCc-----EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 167 DDFYLNLVDWSSQ--N-VLAVGLGTCVYLWTASNSK-----VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~-~la~~~~~~V~lw~~~~~~-----~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
+.-.|.+++|+++ + +++++.|+.|++|++.+.. ....+. +|...|.+++|+|+|++|++|+.||+|+|||+
T Consensus 16 H~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~ 94 (319)
T 3frx_A 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94 (319)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 4456899999974 3 6777789999999986432 233343 89999999999999999999999999999999
Q ss_pred CCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC------CCEEEEE
Q 011916 239 TQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD------DRELASG 310 (475)
Q Consensus 239 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~------~~~lasg 310 (475)
.+++.+..+.+|...|.+++|+ +.+|++|+.|++|++||++ +..+..+.+|...|.++.|+|. +..|+++
T Consensus 95 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 95 ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK--GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT--SCEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred CCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 9999999999999999999995 5899999999999999996 4567788999999999999984 4589999
Q ss_pred eCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCC
Q 011916 311 GNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNV 390 (475)
Q Consensus 311 ~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~ 390 (475)
+.|+.|++||+++.+....+.+|...|.+++|+|++.+|+ +++ .|+.|++||+.+++++..+.....|.+++|+|++
T Consensus 173 ~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~-s~~--~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~ 249 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIA-SAG--KDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNR 249 (319)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEE-EEE--TTCEEEEEETTTTEEEEEEECCSCEEEEEECSSS
T ss_pred eCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEE-EEe--CCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCC
Confidence 9999999999999999999999999999999999999555 444 8999999999999999999888999999999999
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEecC--------CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKVSTLTG--------HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--------h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
..+++ +. ++.+++|++.....+..+.. |...+.+++|+|||++|++|+.||+|+||++.+.
T Consensus 250 ~~la~--~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 250 YWLAA--AT-ATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp SEEEE--EE-TTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CEEEE--Ec-CCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99887 43 45699999998877776643 4567999999999999999999999999999754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-41 Score=334.80 Aligned_cols=282 Identities=21% Similarity=0.359 Sum_probs=247.0
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-- 242 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-- 242 (475)
+...|++++|+|+ .+++++.|+.|+|||..+++....+. .|...|.+++|+|+|++|++|+.|+.|+|||+.+..
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~-~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~ 143 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK-LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR 143 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSC
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe-cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccc
Confidence 3456899999986 47778889999999999998887776 788899999999999999999999999999986532
Q ss_pred -----eeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEe-----cCccCCEEEEEEcC-CCCEEE
Q 011916 243 -----RVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKL-----AGHKSEVCGLKWSH-DDRELA 308 (475)
Q Consensus 243 -----~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~s~-~~~~la 308 (475)
....+.+|...|.++.|. +..|++|+.|++|++||++ .+..+..+ .+|...|.++.|++ ++++|+
T Consensus 144 ~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 222 (380)
T 3iz6_a 144 DGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT-TGQRISIFGSEFPSGHTADVLSLSINSLNANMFI 222 (380)
T ss_dssp CCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTT-TCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE
T ss_pred cCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcC-CCcEEEEeecccCCCCccCeEEEEeecCCCCEEE
Confidence 345678999999999994 4679999999999999998 45555555 67999999999987 889999
Q ss_pred EEeCCCcEEEEECC-CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC--------C
Q 011916 309 SGGNDNQLLVWNQH-SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--------S 379 (475)
Q Consensus 309 sg~~Dg~I~iwd~~-~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--------~ 379 (475)
+|+.|+.|++||++ ..+.+..+.+|...|.+++|+|++.. +++++ .|++|++||+++++++..+... .
T Consensus 223 sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-l~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~ 299 (380)
T 3iz6_a 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR-FGTGS--DDGTCRLFDMRTGHQLQVYNREPDRNDNELP 299 (380)
T ss_dssp EEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSE-EEEEC--SSSCEEEEETTTTEEEEEECCCCSSSCCSSC
T ss_pred EEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCe-EEEEc--CCCeEEEEECCCCcEEEEecccccccccccC
Confidence 99999999999998 55778889999999999999999985 55554 8999999999999988776432 2
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe----cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL----TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l----~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.+.+++|+|+|++|++ |+.||.|++||...++.+..+ .+|.+.|.+++|+|||.+|++|+.|++|+||++....
T Consensus 300 ~v~~~~~s~~g~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 300 IVTSVAFSISGRLLFA--GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SCSEEEECSSSSEEEE--ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred ceEEEEECCCCCEEEE--EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 4899999999999999 889999999999999888877 6799999999999999999999999999999997654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=330.05 Aligned_cols=279 Identities=18% Similarity=0.192 Sum_probs=231.8
Q ss_pred CceeEEecCCC-CEEEEEcCCeEEEEECCCC------------cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 011916 169 FYLNLVDWSSQ-NVLAVGLGTCVYLWTASNS------------KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQV 235 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~------------~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~i 235 (475)
-.+.+++|+++ .+|+++.++.+++||.... ..... ..+...|.+++|+|++ .|++|+.||+|+|
T Consensus 31 ~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~d~-~l~~~s~dg~v~l 107 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAG--VQTEAGVADLTWVGER-GILVASDSGAVEL 107 (344)
T ss_dssp SEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEE--EEESSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred CCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeee--eccCCCEEEEEEeCCC-eEEEEECCCEEEE
Confidence 45889999997 6788887888888863210 01111 1345679999999985 6889999999999
Q ss_pred EECCCCeeeEE----ecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEE
Q 011916 236 WDGTQCKRVRT----FGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELA 308 (475)
Q Consensus 236 wd~~~~~~~~~----~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~la 308 (475)
||+.+++.+.. +.+|...|.+++| ++++|++|+.|++|++||++ .+..+..+.+|...|.+++|++++. +|+
T Consensus 108 Wd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-~~~~~~~~~~h~~~V~~~~~~~~~~~~l~ 186 (344)
T 4gqb_B 108 WELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-QQVVLSSYRAHAAQVTCVAASPHKDSVFL 186 (344)
T ss_dssp EEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECSSCTTEEE
T ss_pred EeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEEcCcCCceEEEEecCCCCCcee
Confidence 99998876544 3489999999999 46899999999999999998 6788899999999999999999874 789
Q ss_pred EEeCCCcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEE
Q 011916 309 SGGNDNQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLA 385 (475)
Q Consensus 309 sg~~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~ 385 (475)
+|+.|++|++||+++++++..+. .|...+.+++|+|++..++++|+ .|+.|++||+++++++..+. |...|.+++
T Consensus 187 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~--~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~ 264 (344)
T 4gqb_B 187 SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGD--ENGTVSLVDTKSTSCVLSSAVHSQCVTGLV 264 (344)
T ss_dssp EEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEE--TTSEEEEEESCC--CCEEEECCSSCEEEEE
T ss_pred eeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEec--cCCcEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 99999999999999998887764 35667999999998888888876 89999999999999988875 678899999
Q ss_pred EcCCCC-eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEEeCCCCEEEEecCCCCC
Q 011916 386 WSKNVN-ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 386 ~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
|+|++. +|++ |+.|+.|+|||+.+++.+ .+.+|.+.|++++|+|++. +|++++.|++|++|++.....
T Consensus 265 fsp~g~~~las--gs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 265 FSPHSVPFLAS--LSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp ECSSSSCCEEE--EETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EccCCCeEEEE--EeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 999985 5666 789999999999988754 6789999999999999986 577999999999999986544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=315.08 Aligned_cols=278 Identities=19% Similarity=0.281 Sum_probs=246.0
Q ss_pred CceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
-.|.+++|+|+ .+++++.|+.|+|||+.++.....+. .|...|.+++|+|++++|++|+.||+|++||+.+++.+..
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~ 92 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVD 92 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEE
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEE
Confidence 45899999997 36777779999999999998887776 6888999999999999999999999999999999999999
Q ss_pred ecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 011916 247 FGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 247 ~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~ 323 (475)
+.+|...|.+++|+ +.+|++|+.|++|++||++........+.+|...|.+++|+| ++.+|++|+.|+.|++||++.
T Consensus 93 ~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~ 172 (304)
T 2ynn_A 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ 172 (304)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTC
T ss_pred EeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence 99999999999995 589999999999999999866567778999999999999999 678999999999999999998
Q ss_pred CceeEEEe-ccccceeEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEec
Q 011916 324 QQPTLRLT-EHTAAVKAIAWSP--HQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 324 ~~~~~~~~-~h~~~v~~l~~sp--~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
..+...+. .|...+..+.|+| ++. ++++++ .|+.|++||+++++++..+. |...|..++|+|+++.|++ |+
T Consensus 173 ~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s--~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s--~s 247 (304)
T 2ynn_A 173 STPNFTLTTGQERGVNYVDYYPLPDKP-YMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS--GS 247 (304)
T ss_dssp SSCSEEEECCCTTCEEEEEECCSTTCC-EEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE--EE
T ss_pred CCccceeccCCcCcEEEEEEEEcCCCC-EEEEEc--CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEE--Ec
Confidence 87766665 4668899999987 445 555655 89999999999999998885 6788999999999999998 88
Q ss_pred CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC--EEEEEeCCCCEEEEecCC
Q 011916 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ--TIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~l~s~s~Dg~I~iW~~~~ 453 (475)
.||.|++||+.+++.+..+..|...+.+++|+|++. ++++|+.|| +.+|++..
T Consensus 248 ~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp TTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEECC-
T ss_pred CCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEecc
Confidence 999999999999999999999999999999999875 577776555 77888764
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-40 Score=322.38 Aligned_cols=285 Identities=19% Similarity=0.358 Sum_probs=235.5
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEE--eeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--ee
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRL--CDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--KR 243 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~--~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--~~ 243 (475)
.+.+++|+|+ .+++++.|+.|+||+..++..... ...+|...|.+++|+|+|++|++|+.||+|+|||+..+ +.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~ 97 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFEC 97 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEE
Confidence 5788999997 466677799999999998864432 22378999999999999999999999999999998776 46
Q ss_pred eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC--ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011916 244 VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS--DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iw 319 (475)
+..+.+|...|.+++|+ +++|++|+.|++|++||++... ..+..+.+|...|.+++|+|++++|++|+.|+.|++|
T Consensus 98 ~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w 177 (345)
T 3fm0_A 98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLY 177 (345)
T ss_dssp EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEE
T ss_pred EEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEE
Confidence 78889999999999995 6899999999999999997543 3456788999999999999999999999999999999
Q ss_pred ECCCCc--eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC---------------ceeeeec--CCCC
Q 011916 320 NQHSQQ--PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG---------------HQLNSVD--TGSQ 380 (475)
Q Consensus 320 d~~~~~--~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~---------------~~~~~~~--~~~~ 380 (475)
|.+.++ +...+.+|...|.+++|+|++.+|+ +++ .|++|++||.... +++..+. +...
T Consensus 178 ~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~-s~s--~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 254 (345)
T 3fm0_A 178 REEEDDWVCCATLEGHESTVWSLAFDPSGQRLA-SCS--DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT 254 (345)
T ss_dssp EEETTEEEEEEEECCCSSCEEEEEECTTSSEEE-EEE--TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC
T ss_pred EecCCCEEEEEEecCCCCceEEEEECCCCCEEE-EEe--CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc
Confidence 998775 4467889999999999999998555 444 8999999996332 1222332 5678
Q ss_pred eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--------e-EEEecCCCcceEEEEECCCC-CEEEEEeCCCCEEEEe
Q 011916 381 VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA--------K-VSTLTGHSLRVLYLATSPDG-QTIVTGAGDETLRFWN 450 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~--------~-~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iW~ 450 (475)
|.+++|++++..|++ ++.|+.|++|+..... . .....+|...|++++|+|++ .+||+|+.||+|++|+
T Consensus 255 v~~v~~~~~~~~l~s--~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 255 IYDIAWCQLTGALAT--ACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp EEEEEECTTTCCEEE--EETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEEEEEecCCCEEEE--EeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 999999999999998 7789999999986542 1 22345899999999999998 4999999999999999
Q ss_pred cCCCCCCCC
Q 011916 451 VFPSLKAPA 459 (475)
Q Consensus 451 ~~~~~~~~~ 459 (475)
+...+....
T Consensus 333 ~~~~~~~~~ 341 (345)
T 3fm0_A 333 YQRPEGLHH 341 (345)
T ss_dssp ECC------
T ss_pred ecCCCCccc
Confidence 988776544
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-39 Score=309.88 Aligned_cols=279 Identities=21% Similarity=0.402 Sum_probs=245.7
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+.-.|.+++|+++ . +++++.|+.|++|+..+++....+. +|...|.+++|+|++++|++|+.||.|++||+.+++.+
T Consensus 22 h~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 100 (312)
T 4ery_A 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL 100 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred cCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEE
Confidence 3456899999997 3 6666779999999999999887775 78899999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 245 RTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
..+.+|...|.+++|+ +++|++|+.|+.|++||++ ....+..+..|...|.+++|+|++++|++|+.|+.|++||++
T Consensus 101 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~ 179 (312)
T 4ery_A 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179 (312)
T ss_dssp EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 9999999999999995 5899999999999999998 567778889999999999999999999999999999999999
Q ss_pred CCceeEEEe-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CC--eeEEEEc-CCCCeEEEEE
Q 011916 323 SQQPTLRLT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQ--VCNLAWS-KNVNELVSTH 397 (475)
Q Consensus 323 ~~~~~~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~--v~~l~~s-~~~~~l~~~~ 397 (475)
+++.+..+. .+...+..++|+|++.++++.+ .|+.|++||+.+++++..+... .. .....++ +++.+|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-- 254 (312)
T 4ery_A 180 SGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT---LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS-- 254 (312)
T ss_dssp TCCEEEEECCSSCCCEEEEEECTTSSEEEEEE---TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE--
T ss_pred CCceeeEEeccCCCceEEEEECCCCCEEEEEc---CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE--
Confidence 998877664 4667899999999999666643 7999999999999988887532 22 2223444 66777777
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe--CCCCEEEEecC
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA--GDETLRFWNVF 452 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s--~Dg~I~iW~~~ 452 (475)
|+.||.|++||+.+++.+..+.+|...|.+++|+|++.+|++++ .|++|++|+.+
T Consensus 255 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred ECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 88999999999999999999999999999999999999999987 69999999975
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=316.90 Aligned_cols=281 Identities=19% Similarity=0.292 Sum_probs=226.7
Q ss_pred CCceeEEecCCCCEEEEEcCCeEEEEECCCCc--EEEEeeCC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----
Q 011916 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSK--VTRLCDLG-PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ---- 240 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~--~~~~~~~~-~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~---- 240 (475)
.-.|.+++|+++.+++++.|+.|+||++.++. ....+..+ |...|.+++|+|++++|++|+.||+|+|||+..
T Consensus 14 ~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~ 93 (330)
T 2hes_X 14 KEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR 93 (330)
T ss_dssp SSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC------
T ss_pred CCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc
Confidence 34588899999977777889999999998763 34444234 899999999999999999999999999999853
Q ss_pred ---CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC---ccEEEecCccCCEEEEEEcCCCCEEEEEeC
Q 011916 241 ---CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS---DYICKLAGHKSEVCGLKWSHDDRELASGGN 312 (475)
Q Consensus 241 ---~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~~~~~lasg~~ 312 (475)
.+.+..+.+|...|.+++|+ +++|++|+.|++|++||++... ..+..+.+|...|.+++|+|++.+|++|+.
T Consensus 94 ~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 173 (330)
T 2hes_X 94 TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSY 173 (330)
T ss_dssp -CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcC
Confidence 45677889999999999995 6899999999999999995332 456778899999999999999999999999
Q ss_pred CCcEEEEECCCC--ceeEEEeccccceeEEEECCCCC-cEEEEecCCCCCeEEEEECCCC--------ceeeeec--CCC
Q 011916 313 DNQLLVWNQHSQ--QPTLRLTEHTAAVKAIAWSPHQS-SLLASGGGTADRCIRFWNTSNG--------HQLNSVD--TGS 379 (475)
Q Consensus 313 Dg~I~iwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~-~ll~sg~Gs~d~~I~iwd~~~~--------~~~~~~~--~~~ 379 (475)
|++|++||...+ +++..+.+|...|.+++|+|++. .++++++ .|++|++||+.++ .+...+. +..
T Consensus 174 D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 174 DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGS--DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEE--TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEe--CCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 999999998876 57788899999999999999842 3566655 8999999998764 2333332 677
Q ss_pred CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc--eEEE-ecCCCc-ceEEEEECC--CCCEEEEEeCCCCEEEEecCC
Q 011916 380 QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA--KVST-LTGHSL-RVLYLATSP--DGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 380 ~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~--~~~~-l~~h~~-~V~~l~~sp--dg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.|.+++|++++ .|++ ++.||.|++||..+++ .+.. +.+|.. .|.+++|+| ++++|++|+.||+|+||++..
T Consensus 252 ~v~~v~~s~~~-~l~s--~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 252 QVYNVAWGFNG-LIAS--VGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEEECTTS-CEEE--EETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ceEEEEEcCCC-EEEE--EeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 89999999665 6776 7789999999998764 3333 357887 899999999 789999999999999999864
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=326.70 Aligned_cols=286 Identities=18% Similarity=0.257 Sum_probs=229.0
Q ss_pred CCCceeEEecCCC-CEEEEEc-------CCeEEEEECCCCcEEEEe---eCCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGL-------GTCVYLWTASNSKVTRLC---DLGPGDSVCSVQWTREGSYISVGTNLGQVQV 235 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~-------~~~V~lw~~~~~~~~~~~---~~~~~~~V~~v~~spdg~~la~g~~dg~v~i 235 (475)
++-.|++++|+|+ .+|+++. |+.|++|+..++...... ..+|...|.+++|+|++. +++++.||+|+|
T Consensus 41 H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~l 119 (357)
T 4g56_B 41 MEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVEL 119 (357)
T ss_dssp CCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEE
T ss_pred ccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEE
Confidence 4556999999998 4555544 578999998776532221 125788899999999986 556788999999
Q ss_pred EECCCCeeeE----EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEE
Q 011916 236 WDGTQCKRVR----TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELA 308 (475)
Q Consensus 236 wd~~~~~~~~----~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~la 308 (475)
||+.+++... ...+|...|.+++|+ +++|++|+.|+.|++||++ .+..+..+.+|...|.+++|++++. +++
T Consensus 120 Wd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-~~~~~~~~~~h~~~v~~v~~s~~~~~~~~ 198 (357)
T 4g56_B 120 WEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-QKAVLKSYNAHSSEVNCVAACPGKDTIFL 198 (357)
T ss_dssp C--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred eeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence 9998876543 334899999999994 6899999999999999998 6778888999999999999999875 889
Q ss_pred EEeCCCcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEE
Q 011916 309 SGGNDNQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLA 385 (475)
Q Consensus 309 sg~~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~ 385 (475)
+++.|+.|++||+++++++..+. .|...+.+++|+|++..++++|+ .|+.|++||+++++++..+. +...|.+++
T Consensus 199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~ 276 (357)
T 4g56_B 199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD--ETGNVSLVNIKNPDSAQTSAVHSQNITGLA 276 (357)
T ss_dssp EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE--SSSCEEEEESSCGGGCEEECCCSSCEEEEE
T ss_pred eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEee--cccceeEEECCCCcEeEEEeccceeEEEEE
Confidence 99999999999999988765543 46778999999999888888876 89999999999999888875 667899999
Q ss_pred EcCCCC-eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC-CCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 386 WSKNVN-ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-DGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 386 ~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
|+|++. +|++ |+.|+.|+|||+.+++.+..+ +|.+.|++|+|+| |+.+|++++.||+|++|++....+...
T Consensus 277 ~sp~~~~~las--gs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~~ 349 (357)
T 4g56_B 277 YSYHSSPFLAS--ISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTEN 349 (357)
T ss_dssp ECSSSSCCEEE--EETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-------
T ss_pred EcCCCCCEEEE--EeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc
Confidence 999985 5666 779999999999998877654 7999999999998 899999999999999999976655444
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=313.94 Aligned_cols=264 Identities=19% Similarity=0.329 Sum_probs=232.5
Q ss_pred EEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEEC
Q 011916 201 TRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDL 278 (475)
Q Consensus 201 ~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~ 278 (475)
.+.+. +|.+.|.+++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++| ++++|++|+.|++|++||+
T Consensus 6 ~~~~~-~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 6 KKTFS-NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp EEEEE-EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred EEeec-CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 34444 78899999999999999999999999999999999999999999999999999 5799999999999999999
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
. .+..+..+.+|...|.+++|+|++++|++|+.|++|++||++++ .....+.+|...|.+++|+|++..++++|+ .
T Consensus 85 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs--~ 161 (304)
T 2ynn_A 85 N-TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC--L 161 (304)
T ss_dssp T-TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE--T
T ss_pred C-CCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe--C
Confidence 8 56778889999999999999999999999999999999999877 455678899999999999996555777766 8
Q ss_pred CCeEEEEECCCCceeeeec--CCCCeeEEEEcC--CCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 358 DRCIRFWNTSNGHQLNSVD--TGSQVCNLAWSK--NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 358 d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~--~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
|+.|++||+.++.....+. +...+..+.|+| ++.+|++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s--~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~ 239 (304)
T 2ynn_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (304)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEE--EETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEE--EcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCC
Confidence 9999999998887766653 446788999987 6677887 889999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 434 GQTIVTGAGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
+.+|++|+.||+|++||+.+......+. +...+|++.
T Consensus 240 ~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~ 277 (304)
T 2ynn_A 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277 (304)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEE
Confidence 9999999999999999999887665543 234455443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=321.24 Aligned_cols=281 Identities=23% Similarity=0.364 Sum_probs=241.4
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCC-----------------CCCcEEEEEEcCCCCEEEEEe
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLG-----------------PGDSVCSVQWTREGSYISVGT 228 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~-----------------~~~~V~~v~~spdg~~la~g~ 228 (475)
+.-.|++++|+|+ .+++++.++.+.||++.+++....+... +...|.+++|+|+|++|++|+
T Consensus 63 h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~ 142 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 142 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc
Confidence 4456899999997 7888888999999999999877665421 122499999999999999999
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCC
Q 011916 229 NLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDR 305 (475)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~ 305 (475)
.||.|+|||+.+++.+..+.+|...|.+++|+ +.+|++|+.|++|++||++ .+.....+. +...+.+++|+| +++
T Consensus 143 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~-~~~~~~~~~-~~~~v~~~~~~~~~~~ 220 (393)
T 1erj_A 143 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTLS-IEDGVTTVAVSPGDGK 220 (393)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEE-CSSCEEEEEECSTTCC
T ss_pred CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC-CCeeEEEEE-cCCCcEEEEEECCCCC
Confidence 99999999999999999999999999999994 6899999999999999998 445444444 567799999999 899
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEE-------eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--------
Q 011916 306 ELASGGNDNQLLVWNQHSQQPTLRL-------TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-------- 370 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-------- 370 (475)
+|++|+.|+.|++||+++++.+..+ .+|...|.+++|+|++..|+ +++ .|+.|++||+.+..
T Consensus 221 ~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~-s~s--~d~~v~~wd~~~~~~~~~~~~~ 297 (393)
T 1erj_A 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV-SGS--LDRSVKLWNLQNANNKSDSKTP 297 (393)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEE-EEE--TTSEEEEEEC------------
T ss_pred EEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEE-EEe--CCCEEEEEECCCCCCcccccCC
Confidence 9999999999999999998877766 56899999999999998554 444 89999999997643
Q ss_pred ----eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC------CCCEEEE
Q 011916 371 ----QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP------DGQTIVT 439 (475)
Q Consensus 371 ----~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp------dg~~l~s 439 (475)
+...+ .+...|.+++|++++.+|++ |+.|+.|++||..+++.+..+.+|...|.+++|++ ++.+|++
T Consensus 298 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s--gs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~s 375 (393)
T 1erj_A 298 NSGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375 (393)
T ss_dssp ---CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEE
T ss_pred CCCcceEEEecccCcEEEEEECCCCCEEEE--EeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEE
Confidence 23333 46778999999999999998 88999999999999999999999999999999986 6889999
Q ss_pred EeCCCCEEEEecCCC
Q 011916 440 GAGDETLRFWNVFPS 454 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~ 454 (475)
|+.||+|+||++...
T Consensus 376 gs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 376 GSGDCKARIWKYKKI 390 (393)
T ss_dssp EETTSEEEEEEEEEC
T ss_pred ECCCCcEEECccccc
Confidence 999999999998643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-38 Score=312.13 Aligned_cols=277 Identities=19% Similarity=0.309 Sum_probs=232.0
Q ss_pred CCceeEEec-----CC-C--CEEEEEcCCeEEEEECCCCc-------EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 011916 168 DFYLNLVDW-----SS-Q--NVLAVGLGTCVYLWTASNSK-------VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQ 232 (475)
Q Consensus 168 d~~v~~l~w-----s~-~--~~la~~~~~~V~lw~~~~~~-------~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~ 232 (475)
.-.|.+++| ++ + .+++++.|+.|++||+.+.+ ....+. +|...|.+++|+|++.+|++|+.||+
T Consensus 21 ~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~-~h~~~V~~~~~~~~~~~l~s~s~D~~ 99 (343)
T 2xzm_R 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT-GHNHFVSDLALSQENCFAISSSWDKT 99 (343)
T ss_dssp SSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEEC-CCSSCEEEEEECSSTTEEEEEETTSE
T ss_pred hhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhc-cCCCceEEEEECCCCCEEEEEcCCCc
Confidence 446888888 54 3 46777779999999987542 233333 89999999999999999999999999
Q ss_pred EEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEec---CccCCEEEEEEcCCC---
Q 011916 233 VQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLA---GHKSEVCGLKWSHDD--- 304 (475)
Q Consensus 233 v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~~~--- 304 (475)
|+|||+.+++.+..+.+|...|.+++|+ +.+|++|+.|++|++||+. . ....... .|...|.+++|+|++
T Consensus 100 v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~-~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 177 (343)
T 2xzm_R 100 LRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNIL-G-ECKFSSAEKENHSDWVSCVRYSPIMKSA 177 (343)
T ss_dssp EEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESS-S-CEEEECCTTTSCSSCEEEEEECCCCCSC
T ss_pred EEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEecc-C-CceeeeecccCCCceeeeeeeccccccc
Confidence 9999999999999999999999999995 6899999999999999997 2 2233333 788999999999987
Q ss_pred -------CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeeec
Q 011916 305 -------RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS-NGHQLNSVD 376 (475)
Q Consensus 305 -------~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~~ 376 (475)
.+|++++.|+.|++||. ..+....+..|...|.+++|+|++++|++ |+ .|+.|++||+. .......+.
T Consensus 178 ~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-gs--~dg~v~iwd~~~~~~~~~~~~ 253 (343)
T 2xzm_R 178 NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT-GG--KDKKLLIWDILNLTYPQREFD 253 (343)
T ss_dssp SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE-EE--TTCEEEEEESSCCSSCSEEEE
T ss_pred cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE-Ec--CCCeEEEEECCCCcccceeec
Confidence 79999999999999994 55667788899999999999999995554 44 89999999994 455566666
Q ss_pred CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE--Eec-----------CCCcceEEEEECCCCCEEEEEeCC
Q 011916 377 TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS--TLT-----------GHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 377 ~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~--~l~-----------~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
+...|.+++|+|++..+++ + .|+.|++||+.+.+... .+. +|...|.+++|+|+|++|++|+.|
T Consensus 254 ~~~~v~~v~~sp~~~~la~--~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~D 330 (343)
T 2xzm_R 254 AGSTINQIAFNPKLQWVAV--G-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTD 330 (343)
T ss_dssp CSSCEEEEEECSSSCEEEE--E-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETT
T ss_pred CCCcEEEEEECCCCCEEEE--E-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCC
Confidence 7778999999999987765 4 57789999998765433 443 688899999999999999999999
Q ss_pred CCEEEEecCCC
Q 011916 444 ETLRFWNVFPS 454 (475)
Q Consensus 444 g~I~iW~~~~~ 454 (475)
|+|++|++.++
T Consensus 331 g~v~~w~~~~g 341 (343)
T 2xzm_R 331 GVIRTFSFETS 341 (343)
T ss_dssp SEEEEEEEEEE
T ss_pred ceEEEEEEEcc
Confidence 99999998754
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=337.20 Aligned_cols=278 Identities=19% Similarity=0.343 Sum_probs=242.1
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEe
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--KRVRTF 247 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--~~~~~~ 247 (475)
..+++|+|+ +.++.+.++.|+||++.+++....+. +|...|++++|+|+|++||+|+.||+|+|||+.++ .....+
T Consensus 21 ~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~ 99 (611)
T 1nr0_A 21 AVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI 99 (611)
T ss_dssp CCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE
T ss_pred eeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEec-CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEee
Confidence 455889997 67788888999999999888777765 89999999999999999999999999999998754 345678
Q ss_pred cCCCCceEEEEeC--CCEEEEEeCC----CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 011916 248 GGHQTRAGVLAWN--SRILSSGSRD----RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQLLVWN 320 (475)
Q Consensus 248 ~~h~~~v~~l~~~--~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~I~iwd 320 (475)
.+|...|.+++|+ +..|++++.+ +.|++||.. .....+.+|...|.+++|+|++. .|++|+.|++|++||
T Consensus 100 ~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~---~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd 176 (611)
T 1nr0_A 100 PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG---TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 176 (611)
T ss_dssp ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC---CBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC---CCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEE
Confidence 8999999999995 6888888765 478888753 34556889999999999999987 699999999999999
Q ss_pred CCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--------cCCCCeeEEEEcCCCCe
Q 011916 321 QHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--------DTGSQVCNLAWSKNVNE 392 (475)
Q Consensus 321 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--------~~~~~v~~l~~s~~~~~ 392 (475)
...++.+..+.+|...|.+++|+|+++. +++++ .|+.|++||+.+++++..+ .|...|.+++|+|++++
T Consensus 177 ~~~~~~~~~l~~H~~~V~~v~fspdg~~-las~s--~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~ 253 (611)
T 1nr0_A 177 GPPFKFKSTFGEHTKFVHSVRYNPDGSL-FASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253 (611)
T ss_dssp TTTBEEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSE
T ss_pred CCCCeEeeeeccccCceEEEEECCCCCE-EEEEE--CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCE
Confidence 9999989999999999999999999984 55554 8999999999999988777 47789999999999999
Q ss_pred EEEEEecCCCeEEEEECCCCceEE-------------------------------------------EecCCCcceEEEE
Q 011916 393 LVSTHGYSQNQIMVWKYPSMAKVS-------------------------------------------TLTGHSLRVLYLA 429 (475)
Q Consensus 393 l~~~~g~~dg~I~iwd~~~~~~~~-------------------------------------------~l~~h~~~V~~l~ 429 (475)
|++ ++.|+.|++||+.+++.+. .+.+|...|++++
T Consensus 254 l~s--~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~ 331 (611)
T 1nr0_A 254 IAS--ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALS 331 (611)
T ss_dssp EEE--EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEE--EeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEE
Confidence 998 7899999999998776543 3457999999999
Q ss_pred ECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 430 TSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 430 ~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
|+|||++|++++.|++|++||+..+...
T Consensus 332 ~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 332 SSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred EeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 9999999999999999999999877543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=321.39 Aligned_cols=258 Identities=21% Similarity=0.318 Sum_probs=235.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|.+.|++++|+|++.+|++|+.||+|+|||+.+++....+.+|...|.+++|+ +.+|++|+.|++|++||+. ....
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~-~~~~ 184 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFEC 184 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSCE
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCce
Confidence 789999999999999999999999999999999999999999999999999995 6899999999999999998 5677
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
+..+.+|...|.+++|+|++++|++|+.|+.|++||++++.++..+.+|...|.+++|+|++..+ ++++ .|+.|++|
T Consensus 185 ~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l-~s~s--~D~~v~vw 261 (410)
T 1vyh_C 185 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI-ASCS--NDQTVRVW 261 (410)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE-EEEE--TTSCEEEE
T ss_pred eEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE-EEEc--CCCeEEEE
Confidence 88899999999999999999999999999999999999999999999999999999999999854 5544 79999999
Q ss_pred ECCCCceeeee-cCCCCeeEEEEcCC--------------------CCeEEEEEecCCCeEEEEECCCCceEEEecCCCc
Q 011916 365 NTSNGHQLNSV-DTGSQVCNLAWSKN--------------------VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL 423 (475)
Q Consensus 365 d~~~~~~~~~~-~~~~~v~~l~~s~~--------------------~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~ 423 (475)
|+.++++...+ .+...|.+++|+|+ +.+|++ |+.|+.|++||+.++..+..+.+|..
T Consensus 262 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s--gs~D~~i~iwd~~~~~~~~~~~~h~~ 339 (410)
T 1vyh_C 262 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS--GSRDKTIKMWDVSTGMCLMTLVGHDN 339 (410)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE--EETTSEEEEEETTTTEEEEEEECCSS
T ss_pred ECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEE--EeCCCeEEEEECCCCceEEEEECCCC
Confidence 99999988877 46788999999997 556777 88999999999999999999999999
Q ss_pred ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 424 RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 424 ~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
.|.+++|+|+|++|++|+.||+|++||+..+.....+. +...++++.
T Consensus 340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~ 387 (410)
T 1vyh_C 340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 387 (410)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEE
Confidence 99999999999999999999999999998877666543 444555543
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=302.87 Aligned_cols=282 Identities=24% Similarity=0.389 Sum_probs=245.0
Q ss_pred CCCceeEEecCCC--C-EEEEEcCCeEEEEECCCCcE-----EEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 167 DDFYLNLVDWSSQ--N-VLAVGLGTCVYLWTASNSKV-----TRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~-~la~~~~~~V~lw~~~~~~~-----~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
+.-.|++++|+|+ + +++++.|+.|+|||+.+.+. ...+. +|...|.+++|+|+|++|++|+.||.|++|+.
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~-~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~ 115 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALR-GHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEe-CCCCCEEEEEECCCCCEEEEEcccccceEEee
Confidence 4557999999985 3 55677799999999876542 23333 78999999999999999999999999999999
Q ss_pred CCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC--CEEEEEeCCC
Q 011916 239 TQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD--RELASGGNDN 314 (475)
Q Consensus 239 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~--~~lasg~~Dg 314 (475)
...........+...+..+.+. +.+|++|+.|+.+++||+...........+|...|..++|++++ .++++++.|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~ 195 (340)
T 4aow_A 116 TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK 195 (340)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTS
T ss_pred cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCC
Confidence 9999998888888888888884 68999999999999999986556666678899999999999864 5789999999
Q ss_pred cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEE
Q 011916 315 QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~ 394 (475)
.|++||+++++.+..+.+|...|.+++|+|++..|+ +++ .|+.|++||+.+++++..+.....+..+.|+|++..++
T Consensus 196 ~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 272 (340)
T 4aow_A 196 LVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCA-SGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLC 272 (340)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE-EEE--TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEE
T ss_pred EEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEE-EEe--CCCeEEEEEeccCceeeeecCCceEEeeecCCCCceee
Confidence 999999999999999999999999999999998554 444 89999999999999999999999999999999876554
Q ss_pred EEEecCCCeEEEEECCCCceEEEec---------CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLT---------GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~---------~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+ ..|+.|++||+++...+..+. +|...|++++|+|||++|++|+.||.|+|||+.++.
T Consensus 273 ~---~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 273 A---ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp E---EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred c---cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 4 468999999999887766654 588899999999999999999999999999998875
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=333.99 Aligned_cols=284 Identities=18% Similarity=0.276 Sum_probs=238.1
Q ss_pred CCCceeEEecCCCC---EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 167 DDFYLNLVDWSSQN---VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~~---~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
+.-.+++++|+|+. +++++.|+.|++||..+++....+. +|.+.|.+++|+|+|++||+|+.||+|+|||+.+++.
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~ 224 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 224 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcE
Confidence 34568999999962 7777889999999999888777765 8999999999999999999999999999999999999
Q ss_pred eEEec-------CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCc-------------------------------
Q 011916 244 VRTFG-------GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSD------------------------------- 283 (475)
Q Consensus 244 ~~~~~-------~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~------------------------------- 283 (475)
+..+. +|...|.+++|+ +.+|++++.|++|++||++....
T Consensus 225 ~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~ 304 (611)
T 1nr0_A 225 TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 304 (611)
T ss_dssp EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCC
Confidence 88884 799999999994 68999999999999999973211
Q ss_pred -----------cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-e--------------------
Q 011916 284 -----------YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL-T-------------------- 331 (475)
Q Consensus 284 -----------~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~-~-------------------- 331 (475)
....+.+|...|.+++|+|++++|++++.|+.|++||+.+++....+ .
T Consensus 305 ~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~ 384 (611)
T 1nr0_A 305 FINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTV 384 (611)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEE
T ss_pred cEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEE
Confidence 12345689999999999999999999999999999998765432211 0
Q ss_pred -------------------------------------------------------------ccccceeEEEECCCCCcEE
Q 011916 332 -------------------------------------------------------------EHTAAVKAIAWSPHQSSLL 350 (475)
Q Consensus 332 -------------------------------------------------------------~h~~~v~~l~~sp~~~~ll 350 (475)
.|...+.+++|+|+++. +
T Consensus 385 s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~-l 463 (611)
T 1nr0_A 385 SWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQF-V 463 (611)
T ss_dssp ETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCE-E
T ss_pred EcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCE-E
Confidence 12344678999999984 5
Q ss_pred EEecCCCCCeEEEEECCCCce--eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEE--ecCCCcce
Q 011916 351 ASGGGTADRCIRFWNTSNGHQ--LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-MAKVST--LTGHSLRV 425 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~--l~~h~~~V 425 (475)
++|+ .|+.|++||+.++.. +....+...|.+++|+|+|++|++ ++.|+.|++|++.+ ++.+.. +.+|...|
T Consensus 464 asgs--~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las--~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V 539 (611)
T 1nr0_A 464 AVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA--TDQSRKVIPYSVANNFELAHTNSWTFHTAKV 539 (611)
T ss_dssp EEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEEGGGTTEESCCCCCCCCSSCE
T ss_pred EEeC--CCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEE--EcCCCCEEEEEcCCCCceeeeeeeeecccce
Confidence 5554 899999999987653 344568889999999999999999 88999999999987 555443 33499999
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 426 LYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.+++|+|||++|++|+.|++|++|++..+..
T Consensus 540 ~~v~fspdg~~lasgs~D~~v~lW~~~~~~~ 570 (611)
T 1nr0_A 540 ACVSWSPDNVRLATGSLDNSVIVWNMNKPSD 570 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred eEEEECCCCCEEEEEECCCcEEEEECCCccc
Confidence 9999999999999999999999999987654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=303.69 Aligned_cols=285 Identities=15% Similarity=0.212 Sum_probs=254.2
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+.-.|.+++|+++ . +++++.++.|++||+.+++....+. +|...|.+++|+|++++|++++.||.|++||+.+++.+
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 109 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 3456899999987 3 5556679999999999999888775 78999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeC--CCEEEEEeCC-----CcEEEEECCCCCc----------cEEEecCccC--CEEEEEEcCCCC
Q 011916 245 RTFGGHQTRAGVLAWN--SRILSSGSRD-----RNILQHDLRVSSD----------YICKLAGHKS--EVCGLKWSHDDR 305 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~--~~~l~sgs~d-----g~I~iwd~~~~~~----------~~~~~~~h~~--~V~~l~~s~~~~ 305 (475)
..+. +...|.+++|+ +.+|++++.+ +.|.+||+..... ....+..|.. .+.+++|+|+++
T Consensus 110 ~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (369)
T 3zwl_B 110 ATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK 188 (369)
T ss_dssp EEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC
T ss_pred EEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC
Confidence 8888 88899999994 6899999999 9999999975432 3445556666 899999999999
Q ss_pred EEEEEeCCCcEEEEECCC-CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEE
Q 011916 306 ELASGGNDNQLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNL 384 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l 384 (475)
+|++++.||.|++||+++ .+.+..+..|...|.+++|+|++..|++.+ .|+.|++||+.+++.+..+.+...+..+
T Consensus 189 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 265 (369)
T 3zwl_B 189 YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSS---RDTNSFLVDVSTLQVLKKYETDCPLNTA 265 (369)
T ss_dssp EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTCCEEEEEECSSCEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEec---CCceEEEEECCCCceeeeecCCCCceeE
Confidence 999999999999999998 788888999999999999999999665543 7999999999999999999999999999
Q ss_pred EEcCCCCeEEEEEecCCC--------------eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 385 AWSKNVNELVSTHGYSQN--------------QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 385 ~~s~~~~~l~~~~g~~dg--------------~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
+|+|+++.+++ +..++ .+++||..+++.+..+.+|...|.+++|+|++++|++++.||.|++|+
T Consensus 266 ~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 266 VITPLKEFIIL--GGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp EECSSSSEEEE--EECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred EecCCCceEEE--eecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99999999999 55666 899999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 011916 451 VFPSLKAP 458 (475)
Q Consensus 451 ~~~~~~~~ 458 (475)
+..+....
T Consensus 344 ~~~~~~~~ 351 (369)
T 3zwl_B 344 FEKSYFDF 351 (369)
T ss_dssp ECHHHHTC
T ss_pred Cccccchh
Confidence 98765433
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-38 Score=313.24 Aligned_cols=281 Identities=13% Similarity=0.171 Sum_probs=248.6
Q ss_pred CCCceeEEecCCCCEEEEEcCCeEEEEECCCCc------EEEEeeCCCCCcEEEEEEcCC----C---CEEEEEeCCCeE
Q 011916 167 DDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSK------VTRLCDLGPGDSVCSVQWTRE----G---SYISVGTNLGQV 233 (475)
Q Consensus 167 ~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~------~~~~~~~~~~~~V~~v~~spd----g---~~la~g~~dg~v 233 (475)
+.-.|.+++|+++.+++++.|+.|++|++.+++ ....+. +|...|.+++|+|+ | ++|++++.||.|
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i 93 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 93 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence 445789999999777888889999999999988 455554 78999999999999 9 999999999999
Q ss_pred EEEECCCCee-----eEEecCC-----CCceEEEEeC------CCE-EEEEeCCCcEEEEECCCC-----CccEE-----
Q 011916 234 QVWDGTQCKR-----VRTFGGH-----QTRAGVLAWN------SRI-LSSGSRDRNILQHDLRVS-----SDYIC----- 286 (475)
Q Consensus 234 ~iwd~~~~~~-----~~~~~~h-----~~~v~~l~~~------~~~-l~sgs~dg~I~iwd~~~~-----~~~~~----- 286 (475)
++||+.+++. +..+..| ...|.+++|+ +.+ |++++.||.|++||++.. ...+.
T Consensus 94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 173 (397)
T 1sq9_A 94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTL 173 (397)
T ss_dssp EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEE
T ss_pred EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcc
Confidence 9999998887 8888888 5899999998 578 999999999999999850 23333
Q ss_pred Ee-------cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec---c---ccceeEEEECCCCCcEEEEe
Q 011916 287 KL-------AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE---H---TAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 287 ~~-------~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~---h---~~~v~~l~~sp~~~~ll~sg 353 (475)
.+ ..|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.. | ...|.+++|+|++..|++.+
T Consensus 174 ~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~ 252 (397)
T 1sq9_A 174 ELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH 252 (397)
T ss_dssp EEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred eeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe
Confidence 45 5588999999999999 999999999999999999999999998 8 99999999999998665543
Q ss_pred cCCCC---CeEEEEECCCCceeeeec--------------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE
Q 011916 354 GGTAD---RCIRFWNTSNGHQLNSVD--------------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS 416 (475)
Q Consensus 354 ~Gs~d---~~I~iwd~~~~~~~~~~~--------------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~ 416 (475)
.| +.|++||+.+++.+..+. +...|.+++|+|++++|++ ++.||.|++||+.+++.+.
T Consensus 253 ---~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~ 327 (397)
T 1sq9_A 253 ---DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS--AGWDGKLRFWDVKTKERIT 327 (397)
T ss_dssp ---EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE--EETTSEEEEEETTTTEEEE
T ss_pred ---cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEE--EeCCCeEEEEEcCCCceeE
Confidence 68 999999999999988885 6788999999999999998 7899999999999999999
Q ss_pred Eec------CC---------------CcceEEEEECCCC----------CEEEEEeCCCCEEEEecCCC
Q 011916 417 TLT------GH---------------SLRVLYLATSPDG----------QTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 417 ~l~------~h---------------~~~V~~l~~spdg----------~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.+. +| ...|++++|+|+| ++|++++.||.|++|++.++
T Consensus 328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 999 88 9999999999998 79999999999999999865
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-37 Score=297.42 Aligned_cols=278 Identities=21% Similarity=0.266 Sum_probs=244.3
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEE----EeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTR----LCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~----~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~ 241 (475)
+.-.+.+++|+++ .+++++.++.|++|++.+++... ....+|...|.+++|+|++++|++++.||.|++||+.++
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~ 129 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC
T ss_pred CCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 4456889999997 67777779999999998765322 211267899999999999999999999999999999987
Q ss_pred e--eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 242 K--RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 242 ~--~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
+ ....+..|...|.+++|+ +++|++++.||.|++||++ ....+..+..|...|.+++|+|++++|++++.|+.|+
T Consensus 130 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 208 (337)
T 1gxr_A 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208 (337)
T ss_dssp --EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeeeeecccCceEEEEECCCCCEEEEEecCCcEE
Confidence 7 667788999999999995 6899999999999999998 5677888899999999999999999999999999999
Q ss_pred EEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEE
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~ 397 (475)
+||+++++.+..+. +...+.+++|+|++..+++.+ .|+.|++||+.+++......+...+.+++|+|++++|++
T Consensus 209 ~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~---~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-- 282 (337)
T 1gxr_A 209 SWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGM---ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS-- 282 (337)
T ss_dssp EEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEE--
T ss_pred EEECCCCceEeeec-CCCceEEEEECCCCCEEEEEc---CCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEE--
Confidence 99999998877764 788899999999999666543 799999999999988777778899999999999999998
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+..+|.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 283 ~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 778999999999999887554 488899999999999999999999999999974
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=303.32 Aligned_cols=258 Identities=22% Similarity=0.359 Sum_probs=229.4
Q ss_pred CCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCee--eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEEC
Q 011916 207 GPGDSVCSVQWTRE----GSYISVGTNLGQVQVWDGTQCKR--VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDL 278 (475)
Q Consensus 207 ~~~~~V~~v~~spd----g~~la~g~~dg~v~iwd~~~~~~--~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~ 278 (475)
+|.+.|.+++|+++ +.+|++|+.||+|+||++..++. ...+.+|...|.+++|+ +.++++++.|++|++||+
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 79999999999974 67999999999999999887654 45688999999999995 589999999999999999
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
. .+..+..+..|...+.+++|+|++++|++|+.|+.|++||+++++....+..|...|.+++|+|++++|++ ++ .|
T Consensus 110 ~-~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las-g~--~d 185 (321)
T 3ow8_A 110 E-NGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS-GA--ID 185 (321)
T ss_dssp T-TTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE-EE--TT
T ss_pred C-CCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE-Ec--CC
Confidence 8 56777888889999999999999999999999999999999999999999999999999999999995555 43 89
Q ss_pred CeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEE
Q 011916 359 RCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTI 437 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 437 (475)
+.|++||+.+++.+..+. +...|.+++|+|++++|++ |+.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|
T Consensus 186 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s--~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 263 (321)
T 3ow8_A 186 GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT--ASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHF 263 (321)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEE--ECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEE
T ss_pred CeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEE--EcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEE
Confidence 999999999999988885 6678999999999999998 8899999999999999999999999999999999999999
Q ss_pred EEEeCCCCEEEEecCCCCCCCCc-ccCCcccccc
Q 011916 438 VTGAGDETLRFWNVFPSLKAPAL-VKDTSLWSLG 470 (475)
Q Consensus 438 ~s~s~Dg~I~iW~~~~~~~~~~~-~~~~~v~s~~ 470 (475)
++++.|++|++||+..+.....+ .+...++++.
T Consensus 264 ~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~ 297 (321)
T 3ow8_A 264 VSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK 297 (321)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred EEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEE
Confidence 99999999999999887766554 3444555543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=329.62 Aligned_cols=278 Identities=24% Similarity=0.381 Sum_probs=239.4
Q ss_pred CCCceeEEecCCC--C-EEEEEcCCeEEEEECCCCc-----EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 167 DDFYLNLVDWSSQ--N-VLAVGLGTCVYLWTASNSK-----VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~-~la~~~~~~V~lw~~~~~~-----~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
+.-.|.+++|+++ + +++++.|+.|+||++.+.. ....+. +|...|.+++|+|+|++|++|+.||+|+|||+
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 4556899999975 3 6677779999999997642 233333 89999999999999999999999999999999
Q ss_pred CCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEE---ecCccCCEEEEEEcCCC--CEEEEEe
Q 011916 239 TQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICK---LAGHKSEVCGLKWSHDD--RELASGG 311 (475)
Q Consensus 239 ~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~h~~~V~~l~~s~~~--~~lasg~ 311 (475)
.+++.+..+.+|...|.+++|+ +++|++|+.|++|++||+.. ...... ..+|...|.+++|+|++ ..|++|+
T Consensus 460 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 460 AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG-ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC-CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence 9999999999999999999995 68999999999999999863 222222 24688999999999986 5899999
Q ss_pred CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCC
Q 011916 312 NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVN 391 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~ 391 (475)
.|+.|++||+++++....+.+|...|.+++|+|++.. +++++ .|+.|++||+.+++++..+.....+.+++|+|++.
T Consensus 539 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~-l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 615 (694)
T 3dm0_A 539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL-CASGG--KDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRY 615 (694)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE-EEEEE--TTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSS
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE-EEEEe--CCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence 9999999999999999999999999999999999985 45544 89999999999999999998888999999999998
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEecCCC-------------------cceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS-------------------LRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-------------------~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
.+++ + .++.|++||+.+++.+..+..+. ..+++++|+|||++|++|+.||+|+||++.
T Consensus 616 ~l~~--~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 616 WLCA--A-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEE--E-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEE--E-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 8776 4 46779999999998887775432 137889999999999999999999999985
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=292.04 Aligned_cols=282 Identities=17% Similarity=0.220 Sum_probs=244.4
Q ss_pred CCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ee
Q 011916 168 DFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC---KR 243 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~---~~ 243 (475)
.-.|.+++|..+ .+++++.|+.|++||+.+++....+. .|...|.+++|+|++++|++|+.||.|++|++... +.
T Consensus 18 ~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~ 96 (313)
T 3odt_A 18 DQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDP 96 (313)
T ss_dssp SSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC
T ss_pred CCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCc
Confidence 456888999434 46666779999999999988777765 67899999999999999999999999999998654 66
Q ss_pred eEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 011916 244 VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~ 322 (475)
+..+.+|...|.+++|++++|++++.||.|++|| .......+..|...|.++.|++ ++++|++++.|+.|++||
T Consensus 97 ~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d-- 171 (313)
T 3odt_A 97 LYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK---EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ-- 171 (313)
T ss_dssp -CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE---TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--
T ss_pred ccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc---CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--
Confidence 7788899999999999999999999999999999 4567778889999999999998 999999999999999999
Q ss_pred CCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecC
Q 011916 323 SQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 323 ~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
..+....+.. |...|.+++|+|++. +++ ++ .|+.|++||+++++.+..+. +...|.+++|+|++ .+++ ++.
T Consensus 172 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~-~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~ 244 (313)
T 3odt_A 172 NDKVIKTFSGIHNDVVRHLAVVDDGH-FIS-CS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVS--CGE 244 (313)
T ss_dssp TTEEEEEECSSCSSCEEEEEEEETTE-EEE-EE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEE--EET
T ss_pred cCceEEEEeccCcccEEEEEEcCCCe-EEE-cc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEE--Eec
Confidence 4556667776 899999999999998 544 43 79999999999999998886 77889999999999 5666 779
Q ss_pred CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccC
Q 011916 401 QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKD 463 (475)
Q Consensus 401 dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~ 463 (475)
||.|++||+.+++.+..+..|...|.+++|+|+++ +++++.||.|++|++..+.........
T Consensus 245 dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~~~~ 306 (313)
T 3odt_A 245 DRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASEDEIK 306 (313)
T ss_dssp TSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-----
T ss_pred CCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehhhhh
Confidence 99999999999999999999999999999999998 667999999999999987766654433
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-36 Score=318.32 Aligned_cols=270 Identities=27% Similarity=0.517 Sum_probs=239.5
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
...+.+++|+|+ .+++++.++.|++||........+. +|...|.+++|+|+|++|++|+.||.|++||. +++.+.
T Consensus 303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~ 379 (577)
T 2ymu_A 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 379 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEe--CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEE
Confidence 345788999986 3666677999999998776654433 78899999999999999999999999999995 578888
Q ss_pred EecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.+.+|...|.+++| ++++|++++.|+.|++||.. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||. +
T Consensus 380 ~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~ 456 (577)
T 2ymu_A 380 TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-N 456 (577)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-T
T ss_pred EecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-C
Confidence 89999999999999 46899999999999999964 5677888999999999999999999999999999999996 5
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
++.+..+..|...|.+++|+|+++.|++ ++ .|+.|++||. +++++..+. +...|.+++|+|++++|++ ++.|+
T Consensus 457 ~~~~~~~~~~~~~v~~~~~spd~~~las-~~--~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s--~~~dg 530 (577)
T 2ymu_A 457 GQLLQTLTGHSSSVRGVAFSPDGQTIAS-AS--DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIAS--ASDDK 530 (577)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSCEEEE-EE--TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEE--EETTS
T ss_pred CCEEEEEcCCCCCEEEEEEcCCCCEEEE-Ee--CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEE--EECcC
Confidence 6678888999999999999999995555 43 7999999995 677777664 6788999999999999998 78999
Q ss_pred eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.|++||+ +++.+..+.+|...|++++|+|||++|+|++.|++|++||
T Consensus 531 ~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 531 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999996 6788999999999999999999999999999999999997
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-38 Score=314.40 Aligned_cols=285 Identities=16% Similarity=0.368 Sum_probs=247.3
Q ss_pred ceeEEecCCC-C-EEEEE-----------cCCeEEEEECCCCcEE-EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 011916 170 YLNLVDWSSQ-N-VLAVG-----------LGTCVYLWTASNSKVT-RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQV 235 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~-----------~~~~V~lw~~~~~~~~-~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~i 235 (475)
.+.+++|+|+ . +++++ .|+.|+||++.+++.. ......|...|.+++|+|++++|++|+.||.|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~v 93 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEE
Confidence 4678999997 3 66665 5889999999987632 2222367899999999999999999999999999
Q ss_pred EECCC----CeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCC------cc--EEEecCccCCEEEEEE
Q 011916 236 WDGTQ----CKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSS------DY--ICKLAGHKSEVCGLKW 300 (475)
Q Consensus 236 wd~~~----~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~------~~--~~~~~~h~~~V~~l~~ 300 (475)
||+.+ .+.+..+.+|...|.+++|+ +.+|++++.|+.|++||++... .. ......|...|.+++|
T Consensus 94 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 173 (416)
T 2pm9_A 94 YSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAW 173 (416)
T ss_dssp ECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEE
T ss_pred eecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEe
Confidence 99987 45888899999999999995 6799999999999999998544 21 1234679999999999
Q ss_pred cCC-CCEEEEEeCCCcEEEEECCCCceeEEEecc------ccceeEEEECCCCCcEEEEecCCCCC---eEEEEECCCC-
Q 011916 301 SHD-DRELASGGNDNQLLVWNQHSQQPTLRLTEH------TAAVKAIAWSPHQSSLLASGGGTADR---CIRFWNTSNG- 369 (475)
Q Consensus 301 s~~-~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~ll~sg~Gs~d~---~I~iwd~~~~- 369 (475)
+|+ +.+|++++.|+.|++||+++++.+..+..+ ...|.+++|+|++..++++++ .|+ .|++||++++
T Consensus 174 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~~~~i~~~d~~~~~ 251 (416)
T 2pm9_A 174 NQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATAT--GSDNDPSILIWDLRNAN 251 (416)
T ss_dssp CSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEE--CCSSSCCCCEEETTSTT
T ss_pred CCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEE--CCCCCceEEEEeCCCCC
Confidence 998 789999999999999999999998888876 789999999999877777765 787 9999999986
Q ss_pred ceeeeec--CCCCeeEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC-CEEEEEeCCCC
Q 011916 370 HQLNSVD--TGSQVCNLAWSK-NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG-QTIVTGAGDET 445 (475)
Q Consensus 370 ~~~~~~~--~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~ 445 (475)
..+..+. +...|.+++|+| ++++|++ ++.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.
T Consensus 252 ~~~~~~~~~~~~~v~~~~~s~~~~~~l~s--~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~ 329 (416)
T 2pm9_A 252 TPLQTLNQGHQKGILSLDWCHQDEHLLLS--SGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNK 329 (416)
T ss_dssp SCSBCCCSCCSSCEEEEEECSSCSSCEEE--EESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSE
T ss_pred CCcEEeecCccCceeEEEeCCCCCCeEEE--EeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCc
Confidence 5666665 778899999999 8888888 7889999999999999999999999999999999999 89999999999
Q ss_pred EEEEecCCCCCCC
Q 011916 446 LRFWNVFPSLKAP 458 (475)
Q Consensus 446 I~iW~~~~~~~~~ 458 (475)
|++|++.......
T Consensus 330 i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 330 IEVQTLQNLTNTL 342 (416)
T ss_dssp EEEEESCCCCCSS
T ss_pred EEEEEccCCCCCc
Confidence 9999998776544
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-38 Score=309.94 Aligned_cols=290 Identities=16% Similarity=0.192 Sum_probs=219.3
Q ss_pred EecCCCCE-EEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeee--
Q 011916 174 VDWSSQNV-LAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN------LGQVQVWDGTQCKRV-- 244 (475)
Q Consensus 174 l~ws~~~~-la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~------dg~v~iwd~~~~~~~-- 244 (475)
++..++++ +....+.....|++..... ..|...|.+|+|+|||++||+|+. ||.|++|+..++...
T Consensus 11 ~d~g~~~~~~~~~g~~~~~~w~~p~~~p-----~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~ 85 (357)
T 4g56_B 11 VDLGTENLYFQSNGSSKGSAWGRPVTAP-----ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES 85 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG
T ss_pred CCCCccceEEecCCCccccccCCCCCCc-----ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee
Confidence 55555544 4444467789998754332 268899999999999999999997 788999998776543
Q ss_pred --EEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCcc---EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 245 --RTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDY---ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 245 --~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
....+|...|.+++|. ...+++++.||+|++||+...... .....+|...|.+++|+|++++|++|+.|+.|++
T Consensus 86 ~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i 165 (357)
T 4g56_B 86 LCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165 (357)
T ss_dssp GCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred EecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 3344788999999995 367888999999999999744321 2345689999999999999999999999999999
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeeEEEEcCCCCeEEE
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---TGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~ 395 (475)
||+++++.+..+..|...|.+++|+|++..++++++ .|+.|++||+++++++..+. +...+.+++|+|++..+++
T Consensus 166 wd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 166 WDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCG--EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEE--TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred EECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeec--cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence 999999999999999999999999999987777766 89999999999998877653 4567999999998665444
Q ss_pred EEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC-CEEEEEeCCCCEEEEecCCCCCCCCcccCCccccccC
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG-QTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLGR 471 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~s~~~ 471 (475)
+ |+.|+.|++||+.+++.+..+.+|...|++++|+|++ ++|++|+.|++|+|||+..++......+...|.++..
T Consensus 244 ~-g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vaf 319 (357)
T 4g56_B 244 C-GDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAW 319 (357)
T ss_dssp E-EESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEE
T ss_pred E-eecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEE
Confidence 3 7899999999999999999999999999999999987 5799999999999999998877766667777766543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=304.01 Aligned_cols=243 Identities=19% Similarity=0.270 Sum_probs=208.4
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEe---eCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLC---DLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~---~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
.+..|.+++|+++ .+++++.||.|+|||+.+++..... ..+|.+.|++++|+|+|++|++|+.||+|+|||+.+++
T Consensus 81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~ 160 (344)
T 4gqb_B 81 TEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQV 160 (344)
T ss_dssp ESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred cCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence 3456899999997 5777788999999999988654332 23799999999999999999999999999999999999
Q ss_pred eeEEecCCCCceEEEEeC--C-CEEEEEeCCCcEEEEECCCCCccEEEe--cCccCCEEEEEEcC-CCCEEEEEeCCCcE
Q 011916 243 RVRTFGGHQTRAGVLAWN--S-RILSSGSRDRNILQHDLRVSSDYICKL--AGHKSEVCGLKWSH-DDRELASGGNDNQL 316 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~-~~~~lasg~~Dg~I 316 (475)
.+..+.+|...|.+++|+ + .+|++|+.|++|++||++ ..+....+ ..|...+.+++|+| ++++|++|+.|+.|
T Consensus 161 ~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v 239 (344)
T 4gqb_B 161 VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR-CPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239 (344)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT-SSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred EEEEEcCcCCceEEEEecCCCCCceeeecccccccccccc-ccceeeeeecceeeccceeeeecCCCCcceEEeccCCcE
Confidence 999999999999999995 3 589999999999999998 44555544 34566799999999 56789999999999
Q ss_pred EEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
++||+++++++..+.+|...|.+++|+|++..++++|+ .|++|++||+.+++++....|...|.+++|+|+++.++++
T Consensus 240 ~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs--~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas 317 (344)
T 4gqb_B 240 SLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLS--EDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTT 317 (344)
T ss_dssp EEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEE--TTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEe--CCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEE
Confidence 99999999999999999999999999999977777776 8999999999999988877888999999999999877654
Q ss_pred EecCCCeEEEEECCCCc
Q 011916 397 HGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~ 413 (475)
++.|+.|++|++++..
T Consensus 318 -~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 318 -VGWDHQVVHHVVPTEP 333 (344)
T ss_dssp -EETTSCEEEEECCC--
T ss_pred -EcCCCeEEEEECCCCC
Confidence 6689999999998654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=301.99 Aligned_cols=283 Identities=14% Similarity=0.240 Sum_probs=241.1
Q ss_pred CCCceeEEecCCC--CEEEEEc----CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEE
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGL----GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTRE---GSYISVGTNLGQVQVWD 237 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~----~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spd---g~~la~g~~dg~v~iwd 237 (475)
+...|.+++|+|+ .+++++. ++.|+||++.+++.......+|...|.+++|+|+ |++|++|+.||.|++||
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd 96 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWN 96 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEEC
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEe
Confidence 4557899999996 3665653 8999999999998877766678999999999998 79999999999999999
Q ss_pred CCCCe-eeEEecCCCCceEEEEe--------CCCEEEEEeCCCcEEEEECCCCCccEEEecCccC----CEEEEE----E
Q 011916 238 GTQCK-RVRTFGGHQTRAGVLAW--------NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS----EVCGLK----W 300 (475)
Q Consensus 238 ~~~~~-~~~~~~~h~~~v~~l~~--------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~----~V~~l~----~ 300 (475)
+.+++ .+..+.+|...|.++.| ++.+|++++.||.|++||++.....+..+..|.+ .|.++. |
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 176 (357)
T 3i2n_A 97 LEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAY 176 (357)
T ss_dssp TTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCC
T ss_pred CCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEecc
Confidence 99988 88899999999999965 3579999999999999999965556777766655 799998 7
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECC---CCCcEEEEecCCCCCeEEEEECCCCceeeee--
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP---HQSSLLASGGGTADRCIRFWNTSNGHQLNSV-- 375 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp---~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-- 375 (475)
++++++|++++.|+.|++||+++++... ...|...|.+++|+| ++..+++ ++ .|+.|++||+++++.+..+
T Consensus 177 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~-~~--~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 177 NQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVA-TS--LEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp C-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEE-EE--STTEEEEEEEEEEETTTEEEE
T ss_pred CCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEE-EC--CCCeEEEEeCcCCCcccceee
Confidence 8899999999999999999999988754 456889999999999 7885555 43 7999999999887665444
Q ss_pred ----cCCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCCC-------------------ceEEEecCCCcceEEEEEC
Q 011916 376 ----DTGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPSM-------------------AKVSTLTGHSLRVLYLATS 431 (475)
Q Consensus 376 ----~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~-------------------~~~~~l~~h~~~V~~l~~s 431 (475)
.+...|.+++|+|+++ ++++ ++.||.|++||+.+. +.+..+.+|...|.+++|+
T Consensus 253 ~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s 330 (357)
T 3i2n_A 253 VSEKAHKSTVWQVRHLPQNRELFLT--AGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWS 330 (357)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEE--EETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEEC
T ss_pred eccCCCcCCEEEEEECCCCCcEEEE--EeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEc
Confidence 4778999999999999 5666 789999999998753 4677888999999999999
Q ss_pred CCCCEEE-EEeCCCCEEEEecCCCC
Q 011916 432 PDGQTIV-TGAGDETLRFWNVFPSL 455 (475)
Q Consensus 432 pdg~~l~-s~s~Dg~I~iW~~~~~~ 455 (475)
|++++|+ +++.||.|++|++....
T Consensus 331 ~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 331 PDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp SSSTTEEEEEETTSEEEEEEECC--
T ss_pred CCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999998 89999999999998654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=302.09 Aligned_cols=278 Identities=18% Similarity=0.325 Sum_probs=237.4
Q ss_pred CCCceeEEecCC----C--CEEEEEcCCeEEEEECCCCcEEEEeeC----CCCCcEEEEEEcCC----CCEEEEEeCCCe
Q 011916 167 DDFYLNLVDWSS----Q--NVLAVGLGTCVYLWTASNSKVTRLCDL----GPGDSVCSVQWTRE----GSYISVGTNLGQ 232 (475)
Q Consensus 167 ~d~~v~~l~ws~----~--~~la~~~~~~V~lw~~~~~~~~~~~~~----~~~~~V~~v~~spd----g~~la~g~~dg~ 232 (475)
+.-.|.+++|+| . .+++++.++.|++|++.+++....+.. .|...|.+++|+|+ |++|++|+.||.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~ 96 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGI 96 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCE
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCE
Confidence 455789999996 2 378888889999999998776554431 36688999999998 679999999999
Q ss_pred EEEEECCCCeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEe---cCccCCEEEEEEcCCCCE
Q 011916 233 VQVWDGTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKL---AGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 233 v~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~s~~~~~ 306 (475)
|++||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++||++ .+..+..+ ..|...|.+++|+|++++
T Consensus 97 i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 175 (366)
T 3k26_A 97 IRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-TDTLVAIFGGVEGHRDEVLSADYDLLGEK 175 (366)
T ss_dssp EEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT-TTEEEEEECSTTSCSSCEEEEEECTTSSE
T ss_pred EEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee-cCeEEEEecccccccCceeEEEECCCCCE
Confidence 9999999999999999999999999994 5899999999999999998 55666666 689999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEe----------------------------ccccceeEEEECCCCCcEEEEecCCCC
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLT----------------------------EHTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~----------------------------~h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
|++++.||.|++||+++++.+..+. .|...|.+++|+ +. ++++++ .|
T Consensus 176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~~~~--~d 250 (366)
T 3k26_A 176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GD-LILSKS--CE 250 (366)
T ss_dssp EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TT-EEEEEC--SS
T ss_pred EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CC-EEEEEe--cC
Confidence 9999999999999999775443332 389999999999 44 566654 89
Q ss_pred CeEEEEECCCCce--------------eeee-cCCCCeeEEEEcCC--CCeEEEEEecCCCeEEEEECCCCc----eEEE
Q 011916 359 RCIRFWNTSNGHQ--------------LNSV-DTGSQVCNLAWSKN--VNELVSTHGYSQNQIMVWKYPSMA----KVST 417 (475)
Q Consensus 359 ~~I~iwd~~~~~~--------------~~~~-~~~~~v~~l~~s~~--~~~l~~~~g~~dg~I~iwd~~~~~----~~~~ 417 (475)
+.|++||+.++.. +..+ .+...|.+++|+|+ +++|++ |+.||.|++||+.+++ ....
T Consensus 251 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~ 328 (366)
T 3k26_A 251 NAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLAL--GNQVGKLYVWDLEVEDPHKAKCTT 328 (366)
T ss_dssp SEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEE--ECTTSCEEEEECCSSSGGGCEEEE
T ss_pred CEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEE--EecCCcEEEEECCCCCCccccceE
Confidence 9999999988754 4444 35678999999999 999998 8899999999999875 4557
Q ss_pred ecCC--CcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 418 LTGH--SLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 418 l~~h--~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+.+| ...|++++|+|++++|++++.||.|++||+.
T Consensus 329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 7877 7999999999999999999999999999985
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=303.76 Aligned_cols=276 Identities=14% Similarity=0.238 Sum_probs=246.1
Q ss_pred CCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.-.+.+++|+++ . +++++.++.|++|+ .+++....+. .|...|.+++|+|++++|++++.||.|++||+.+++.+.
T Consensus 108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~ 185 (425)
T 1r5m_A 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ 185 (425)
T ss_dssp CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence 447899999987 3 56666799999999 5666666554 788999999999999999999999999999999999999
Q ss_pred EecCCCCc---------------eEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE
Q 011916 246 TFGGHQTR---------------AGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS 309 (475)
Q Consensus 246 ~~~~h~~~---------------v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las 309 (475)
.+..+... +.+++|. +..+++++.||.|++||++ ....+..+..|...|.+++|+|++++|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT-EKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETT-CSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcC-CCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 99888776 8889994 5789999999999999998 56777788899999999999999999999
Q ss_pred EeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcC
Q 011916 310 GGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSK 388 (475)
Q Consensus 310 g~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~ 388 (475)
++.|+.|++||+++++.+..+..|...|.+++|+|++ ++++++ .|+.|++||+.+++.+..+. +...+.+++|+|
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~ 340 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD--KVISCS--MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ 340 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT--EEEEEE--TTSEEEEEETTTTEEEEEEECTTCCEEEEEECT
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC--EEEEEe--CCCcEEEEECCCCcEeEecccCCccEEEEEEcC
Confidence 9999999999999999999999999999999999999 455544 79999999999999888875 578899999999
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCc--------------------eEEEecCCCc--ceEEEEECCCCCEEEEEeCCCCE
Q 011916 389 NVNELVSTHGYSQNQIMVWKYPSMA--------------------KVSTLTGHSL--RVLYLATSPDGQTIVTGAGDETL 446 (475)
Q Consensus 389 ~~~~l~~~~g~~dg~I~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~spdg~~l~s~s~Dg~I 446 (475)
++++|++ ++.+|.|++||+.+++ .+..+.+|.. .|.+++|+|++++|++++.||.|
T Consensus 341 ~~~~l~~--~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 341 DGQKYAV--AFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp TSSEEEE--EETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred CCCEEEE--EECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence 9999998 7889999999999888 8999999977 99999999999999999999999
Q ss_pred EEEecC
Q 011916 447 RFWNVF 452 (475)
Q Consensus 447 ~iW~~~ 452 (475)
++|++.
T Consensus 419 ~iw~~~ 424 (425)
T 1r5m_A 419 SVVAIP 424 (425)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999986
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=294.68 Aligned_cols=258 Identities=17% Similarity=0.345 Sum_probs=227.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC--
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS-- 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-- 282 (475)
+|.+.|.+++|+|++++|++|+.||+|+|||+.+++.+..+..|...|.+++|+ +.+|++|+.|+.|++||+....
T Consensus 53 gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~ 132 (340)
T 1got_B 53 GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc
Confidence 899999999999999999999999999999999999999999999999999994 6899999999999999997543
Q ss_pred -ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 283 -DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 283 -~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
.....+.+|...|.++.|++++ .+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++. ++++|+ .|+.|
T Consensus 133 ~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg~--~d~~v 208 (340)
T 1got_B 133 VRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR-LFVSGA--CDASA 208 (340)
T ss_dssp CEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEE--TTSCE
T ss_pred ceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC-EEEEEe--CCCcE
Confidence 3456688999999999999877 589999999999999999999999999999999999999998 455554 89999
Q ss_pred EEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCEEE
Q 011916 362 RFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~ 438 (475)
++||++++.++..+. +...|.+++|+|++++|++ |+.|+.|++||+.+++.+..+.. +...|.+++|+|+|++|+
T Consensus 209 ~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 209 KLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT--GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp EEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEE
T ss_pred EEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEE--EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEE
Confidence 999999999988885 6778999999999999998 88999999999999988877753 345799999999999999
Q ss_pred EEeCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 439 TGAGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 439 s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
+|+.|+.|++||+........+. +...+.++.
T Consensus 287 ~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~ 319 (340)
T 1got_B 287 AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319 (340)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEE
T ss_pred EECCCCeEEEEEcccCcEeeEeecCCCcEEEEE
Confidence 99999999999998776655443 444554443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=299.31 Aligned_cols=275 Identities=16% Similarity=0.231 Sum_probs=229.9
Q ss_pred CCCceeEEecCCCC---EEEEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC
Q 011916 167 DDFYLNLVDWSSQN---VLAVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 167 ~d~~v~~l~ws~~~---~la~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~ 241 (475)
+.-.+.+++|+++. +++++.|+.|+|||+.+++....+.. +|...|.+++|+| ++++|++++.||.|++||+.+
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~- 150 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG- 150 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-
Confidence 34568999999864 56666799999999999988777764 6899999999999 789999999999999999986
Q ss_pred eeeEEecC---CCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEEEeCCCc
Q 011916 242 KRVRTFGG---HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQ 315 (475)
Q Consensus 242 ~~~~~~~~---h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~ 315 (475)
..+..+.. |...|.+++|+ +.+|++|+.|+.|++||++ +..+..+.+|...|.+++|+|+++ +|++|+.|+.
T Consensus 151 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 228 (383)
T 3ei3_B 151 SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDAT 228 (383)
T ss_dssp CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCE
Confidence 55555544 44789999994 6899999999999999994 567788899999999999999999 9999999999
Q ss_pred EEEEECCC----CceeEEEeccccceeEEEECC-CCCcEEEEecCCCCCeEEEEECCCCceeeeec-C-------C----
Q 011916 316 LLVWNQHS----QQPTLRLTEHTAAVKAIAWSP-HQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-T-------G---- 378 (475)
Q Consensus 316 I~iwd~~~----~~~~~~~~~h~~~v~~l~~sp-~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~-------~---- 378 (475)
|++||+++ +..+..+ .|...|.+++|+| ++..|++ ++ .|+.|++||+.+++.+..+. + .
T Consensus 229 i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~-~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T 3ei3_B 229 VKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLT-TD--QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK 304 (383)
T ss_dssp EEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEE-EE--SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred EEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEE-Ec--CCCcEEEEECCCCccccccccccccccccccceE
Confidence 99999997 5555555 6999999999999 8886555 43 79999999999987765553 1 1
Q ss_pred ------CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 379 ------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 379 ------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
..+..++|+|++++ + |+.|+.|++||+.+++.+..+.+ |...+..++|+|++.+|++|+ |+.|+|||
T Consensus 305 ~~~~p~~~~~~~~~s~dg~~--s--~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~ 379 (383)
T 3ei3_B 305 ATWHPMYDLIVAGRYPDDQL--L--LNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWN 379 (383)
T ss_dssp CEECSSSSEEEEECBCCTTT--C--TTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred EeccCCCCceEEEecCCccc--c--cCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEe
Confidence 23444566666665 3 67899999999999999999987 567788889999999999997 99999999
Q ss_pred cCC
Q 011916 451 VFP 453 (475)
Q Consensus 451 ~~~ 453 (475)
+.+
T Consensus 380 ~~~ 382 (383)
T 3ei3_B 380 RED 382 (383)
T ss_dssp CC-
T ss_pred cCC
Confidence 874
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=312.09 Aligned_cols=289 Identities=25% Similarity=0.476 Sum_probs=246.2
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
...+++++|+++ .+++++.++.|++|+... +....+. +|...|.+++|+|++++|++++.||.|++||... +.+.
T Consensus 262 ~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~-~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~ 338 (577)
T 2ymu_A 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQ 338 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEEEEEe-cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeE
Confidence 456889999987 366677799999999754 4445444 7899999999999999999999999999999764 5567
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.+.+|...|.+++|+ +.+|++|+.|+.|++||.. +..+..+.+|...|.+++|+|++++|++++.|+.|++||. +
T Consensus 339 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~ 415 (577)
T 2ymu_A 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-N 415 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-T
T ss_pred EEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-C
Confidence 788999999999994 6899999999999999964 5677888999999999999999999999999999999995 5
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
++.+..+..|...|.+++|+|+++.|++ ++ .|+.|++||.. ++.+..+ .+...|.+++|+|++++|++ ++.|+
T Consensus 416 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~--~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~spd~~~las--~~~d~ 489 (577)
T 2ymu_A 416 GQLLQTLTGHSSSVWGVAFSPDDQTIAS-AS--DDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIAS--ASDDK 489 (577)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEE-EE--TTSEEEEEETT-SCEEEEEECCSSCEEEEEECTTSCEEEE--EETTS
T ss_pred CCEEEEecCCCCCeEEEEECCCCCEEEE-Ec--CCCEEEEEECC-CCEEEEEcCCCCCEEEEEEcCCCCEEEE--EeCCC
Confidence 6778888999999999999999996555 43 79999999974 5555554 57789999999999999998 78999
Q ss_pred eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC-cccCCcccccc
Q 011916 403 QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA-LVKDTSLWSLG 470 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~-~~~~~~v~s~~ 470 (475)
.|++||. +++.+..+.+|...|++++|+|||++|++++.||.|++||.. ++.... ..|...|+++.
T Consensus 490 ~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~~~~~~h~~~v~~~~ 556 (577)
T 2ymu_A 490 TVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVA 556 (577)
T ss_dssp EEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEE
T ss_pred EEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCEEEEEcCCCCCEEEEE
Confidence 9999995 688899999999999999999999999999999999999964 333333 33455665554
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-36 Score=295.55 Aligned_cols=281 Identities=15% Similarity=0.167 Sum_probs=237.1
Q ss_pred CCceeEEecCCC-CEEEEE-cCCeEEEEECCCCc--EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 168 DFYLNLVDWSSQ-NVLAVG-LGTCVYLWTASNSK--VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~-~~~~V~lw~~~~~~--~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
.-.+.+++|+++ ++++++ .++.|++||+.+++ ....+. +|...|.+++|+|++++|++|+.||.|++||+.+++.
T Consensus 8 ~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 86 (372)
T 1k8k_C 8 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 86 (372)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence 345888999987 555555 79999999999987 555554 7899999999999999999999999999999988875
Q ss_pred eEEe--cCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCc---cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 244 VRTF--GGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSD---YICKLAGHKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 244 ~~~~--~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
...+ ..|...|.+++|+ +++|++++.|+.|++||++.... .......|...|.+++|+|++++|++++.|+.|
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 166 (372)
T 1k8k_C 87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC 166 (372)
T ss_dssp EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCE
Confidence 5443 6799999999995 68999999999999999985442 233346789999999999999999999999999
Q ss_pred EEEECC------------------CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-C
Q 011916 317 LVWNQH------------------SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-T 377 (475)
Q Consensus 317 ~iwd~~------------------~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~ 377 (475)
++||++ .++.+..+..|...|.+++|+|++..+++ ++ .|+.|++||+.+++++..+. +
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~--~d~~i~i~d~~~~~~~~~~~~~ 243 (372)
T 1k8k_C 167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW-VS--HDSTVCLADADKKMAVATLASE 243 (372)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE-EE--TTTEEEEEEGGGTTEEEEEECS
T ss_pred EEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE-Ee--CCCEEEEEECCCCceeEEEccC
Confidence 999953 67788888899999999999999985555 43 79999999999999988885 4
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC--Cce--------------------------------E------EE
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--MAK--------------------------------V------ST 417 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--~~~--------------------------------~------~~ 417 (475)
...+.+++|+|++.++++ | .|+.|++|++.+ ++. . ..
T Consensus 244 ~~~v~~~~~~~~~~~l~~--~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (372)
T 1k8k_C 244 TLPLLAVTFITESSLVAA--G-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG 320 (372)
T ss_dssp SCCEEEEEEEETTEEEEE--E-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred CCCeEEEEEecCCCEEEE--E-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccc
Confidence 568999999999998877 6 899999999987 321 0 22
Q ss_pred e-cCCCcceEEEEEC-CCC---CEEEEEeCCCCEEEEecCCCC
Q 011916 418 L-TGHSLRVLYLATS-PDG---QTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 418 l-~~h~~~V~~l~~s-pdg---~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+ .+|...|++++|+ ++| .+|++|+.||.|++|++...+
T Consensus 321 ~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 3 4899999999966 677 999999999999999997643
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-36 Score=305.11 Aligned_cols=282 Identities=24% Similarity=0.394 Sum_probs=240.4
Q ss_pred CceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 169 FYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
..+.++++..+.+++++.|+.|++||..+++....+. +|...|.+++| ++++|++|+.||.|++||+.+++.+..+.
T Consensus 134 ~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 210 (435)
T 1p22_A 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI 210 (435)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred CcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEc
Confidence 3577899977788888999999999999999888876 78999999998 78999999999999999999999999999
Q ss_pred CCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCcc--EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 249 GHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDY--ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 249 ~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
+|...|.+++|+++.|++|+.||.|++||++..... ...+.+|...|.+++| ++++|++|+.||.|++||+++++.
T Consensus 211 ~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~ 288 (435)
T 1p22_A 211 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF 288 (435)
T ss_dssp CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE
T ss_pred CCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE
Confidence 999999999999999999999999999999854432 2678899999999999 788999999999999999999999
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
+..+..|...|.+++|+ +. ++++|+ .|+.|++||+.+++++..+. +...|.+++| ++..|++ |+.||.|+
T Consensus 289 ~~~~~~~~~~v~~~~~~--~~-~l~~g~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~s--g~~dg~i~ 359 (435)
T 1p22_A 289 VRTLNGHKRGIACLQYR--DR-LVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS--GAYDGKIK 359 (435)
T ss_dssp EEEEECCSSCEEEEEEE--TT-EEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEE--EETTSCEE
T ss_pred EEEEcCCCCcEEEEEeC--CC-EEEEEe--CCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEE--EeCCCcEE
Confidence 99999999999999994 44 566654 89999999999999998886 6678999998 7788888 88999999
Q ss_pred EEECCCCc---------eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccCCcc
Q 011916 406 VWKYPSMA---------KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSL 466 (475)
Q Consensus 406 iwd~~~~~---------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v 466 (475)
+||+.++. .+..+.+|.+.|.+++| ++.+|++++.||+|++||+...............
T Consensus 360 vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~ 427 (435)
T 1p22_A 360 VWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPS 427 (435)
T ss_dssp EEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----------------
T ss_pred EEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCc
Confidence 99997665 78899999999999999 7889999999999999999988766655444433
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=292.44 Aligned_cols=291 Identities=20% Similarity=0.225 Sum_probs=244.8
Q ss_pred ceeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---
Q 011916 170 YLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--- 244 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--- 244 (475)
.+.+++|+++ .+++++. ++.+.+|.......... ..+|...|++++|+|++++|++++ ||.|++||+.+++..
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~ 88 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQIN-TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPV 88 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEE-EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCS
T ss_pred ceeEEEECCCCCEEEeecCCCcEeccccCCccccce-eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeee
Confidence 4677999997 5655554 55566665444332222 237899999999999999999999 999999999876533
Q ss_pred EEec--CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011916 245 RTFG--GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 245 ~~~~--~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iw 319 (475)
..+. +|...|.+++|+ +++|++++.|+.|++||++.... ....+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 89 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~ 168 (337)
T 1gxr_A 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW 168 (337)
T ss_dssp EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEE
Confidence 3333 789999999995 68999999999999999984432 456678899999999999999999999999999999
Q ss_pred ECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec
Q 011916 320 NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 320 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
|+++++.+..+..|...|.+++|+|++..+++.+ .|+.|++||+++++.+..+.+...+.+++|+|+++.+++ +.
T Consensus 169 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~ 243 (337)
T 1gxr_A 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG---LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV--GM 243 (337)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE---TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE--EE
T ss_pred eCCCCceeeeeecccCceEEEEECCCCCEEEEEe---cCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEE--Ec
Confidence 9999999999999999999999999998665543 799999999999999999999999999999999999998 78
Q ss_pred CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccCCcccc
Q 011916 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWS 468 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~s 468 (475)
.++.|++||+.+.+. ..+..|...|.+++|+|++++|++++.||.|++|++..+.......+...+.+
T Consensus 244 ~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~ 311 (337)
T 1gxr_A 244 ESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS 311 (337)
T ss_dssp TTSCEEEEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEE
T ss_pred CCCcEEEEECCCCCe-EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEE
Confidence 899999999998775 46778999999999999999999999999999999998876654445554443
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=284.00 Aligned_cols=256 Identities=22% Similarity=0.396 Sum_probs=227.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|.+.|++++|+|++++|++|+.||.|++|++.+++....+.+|...|.+++|+ +++|++|+.|+.|++||++ ....
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~-~~~~ 99 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS-SGKC 99 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCE
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC-CCcE
Confidence 899999999999999999999999999999999999999999999999999995 6899999999999999998 5677
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.+..+..|...|.+++|+|++..+++ ++ .|+.|++|
T Consensus 100 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~--~d~~i~~w 176 (312)
T 4ery_A 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS-SS--YDGLCRIW 176 (312)
T ss_dssp EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE-EE--TTSCEEEE
T ss_pred EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE-Ee--CCCcEEEE
Confidence 8889999999999999999999999999999999999999999999999999999999999985554 43 79999999
Q ss_pred ECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceE---EEEECCCCCEEEE
Q 011916 365 NTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVL---YLATSPDGQTIVT 439 (475)
Q Consensus 365 d~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~---~l~~spdg~~l~s 439 (475)
|+.+++.+..+. +...+..++|+|++++|++ +..|+.|++||+.+++.+..+.+|...+. .....+++.+|++
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 254 (312)
T 4ery_A 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILA--ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVS 254 (312)
T ss_dssp ETTTCCEEEEECCSSCCCEEEEEECTTSSEEEE--EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEE
T ss_pred ECCCCceeeEEeccCCCceEEEEECCCCCEEEE--EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEE
Confidence 999999887763 4567999999999999999 88999999999999999999998876543 2334468899999
Q ss_pred EeCCCCEEEEecCCCCCCCCcc-cCCcccc
Q 011916 440 GAGDETLRFWNVFPSLKAPALV-KDTSLWS 468 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s 468 (475)
|+.||.|++||+..+.....+. +...+++
T Consensus 255 g~~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 284 (312)
T 4ery_A 255 GSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284 (312)
T ss_dssp CCTTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred ECCCCEEEEEECCCchhhhhhhccCCcEEE
Confidence 9999999999999887665543 3334443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-36 Score=307.85 Aligned_cols=284 Identities=17% Similarity=0.196 Sum_probs=224.1
Q ss_pred CCceeEEecCCC--CEE-EEEcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCe
Q 011916 168 DFYLNLVDWSSQ--NVL-AVGLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 168 d~~v~~l~ws~~--~~l-a~~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~ 242 (475)
+-.|++|+|+|. ++| +++.||.|+|||+.+++......+ +|.+.|++|+|+| ++++|++|+.||+|+|||++++.
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~ 198 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI 198 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc
Confidence 456999999983 445 556699999999998876555443 7999999999998 78999999999999999998765
Q ss_pred eeEEecC--CCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEEEeCCCcEE
Q 011916 243 RVRTFGG--HQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELASGGNDNQLL 317 (475)
Q Consensus 243 ~~~~~~~--h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~lasg~~Dg~I~ 317 (475)
....... +...+.+++| ++.+|++|+.||.|++||++ +..+..+.+|...|.+++|+|++. +|++|+.|+.|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~--~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~ 276 (435)
T 4e54_B 199 LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD--GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK 276 (435)
T ss_dssp EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS--SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC--cceeEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence 5444433 3445778888 56899999999999999996 355667889999999999999876 788999999999
Q ss_pred EEECCCCceeE---EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-------CCeeEEEEc
Q 011916 318 VWNQHSQQPTL---RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-------SQVCNLAWS 387 (475)
Q Consensus 318 iwd~~~~~~~~---~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-------~~v~~l~~s 387 (475)
|||+++.+... ...+|...|.+++|+|++.+|++ ++ .|+.|++||+.++.+...+... ..+....|+
T Consensus 277 iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s-~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 277 IWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT-TD--QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp EEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE-EE--SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred EEecccccccceEEEeeeccccccceeECCCCCeeEE-Ec--CCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 99998765433 33568999999999999996655 43 7999999999998877665311 124456778
Q ss_pred CCCCeEEEEE----------ecCCCeEEEEECCCCceEEEec-CCCcceEEE-EECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 388 KNVNELVSTH----------GYSQNQIMVWKYPSMAKVSTLT-GHSLRVLYL-ATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 388 ~~~~~l~~~~----------g~~dg~I~iwd~~~~~~~~~l~-~h~~~V~~l-~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+++..+++.. +..++.|++||..+++.+..+. +|...|.++ +|+|+|.+|++|+ |++|+||++.++.
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 8777776631 1234679999999999998875 588888887 6999999999876 8899999998876
Q ss_pred CC
Q 011916 456 KA 457 (475)
Q Consensus 456 ~~ 457 (475)
..
T Consensus 433 ~r 434 (435)
T 4e54_B 433 TR 434 (435)
T ss_dssp --
T ss_pred ee
Confidence 43
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-35 Score=288.69 Aligned_cols=260 Identities=18% Similarity=0.315 Sum_probs=228.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC--
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS-- 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-- 282 (475)
+|.+.|.+++|+|++++|++|+.||+|+|||..+++....+..|...|.+++|+ +.+|++|+.|+.+.+|++....
T Consensus 62 gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~ 141 (354)
T 2pbi_B 62 GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE 141 (354)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc
Confidence 899999999999999999999999999999999999999999999999999994 6899999999999999986331
Q ss_pred ---ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCC-CcEEEEecCCCC
Q 011916 283 ---DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ-SSLLASGGGTAD 358 (475)
Q Consensus 283 ---~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~-~~ll~sg~Gs~d 358 (475)
.....+.+|...|.++.|++++..|++++.|++|++||+++++.+..+.+|...|.+++|+|+. ..++++|+ .|
T Consensus 142 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs--~D 219 (354)
T 2pbi_B 142 NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGG--CD 219 (354)
T ss_dssp CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEE--TT
T ss_pred cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEe--CC
Confidence 3456677899999999999999999999999999999999999999999999999999998853 23666655 89
Q ss_pred CeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC--CcceEEEEECCCCC
Q 011916 359 RCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH--SLRVLYLATSPDGQ 435 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h--~~~V~~l~~spdg~ 435 (475)
+.|++||+++++++..+. +...|.+++|+|++..|++ |+.|+.|++||+.+.+.+..+..+ ...+.+++|+|+|.
T Consensus 220 g~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~ 297 (354)
T 2pbi_B 220 KKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFAS--GSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGR 297 (354)
T ss_dssp SCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSS
T ss_pred CeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEE--EeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCC
Confidence 999999999999988885 6788999999999999998 889999999999998887777643 45789999999999
Q ss_pred EEEEEeCCCCEEEEecCCCCCCCCc-ccCCcccccc
Q 011916 436 TIVTGAGDETLRFWNVFPSLKAPAL-VKDTSLWSLG 470 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~~~~~~~-~~~~~v~s~~ 470 (475)
+|++|+.|++|++||+..+.....+ .+...++++.
T Consensus 298 ~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~ 333 (354)
T 2pbi_B 298 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLR 333 (354)
T ss_dssp EEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEE
T ss_pred EEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEE
Confidence 9999999999999999877655443 3444554443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=283.70 Aligned_cols=243 Identities=18% Similarity=0.322 Sum_probs=207.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ--CKRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~--~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~ 280 (475)
+|.+.|.+++|+|+|++||+|+.||+|+|||+.. .+.+.++.+|...|.+++|+ +++|++|+.|++|++||++.
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~ 86 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN 86 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence 7899999999999999999999999999999874 46788999999999999994 68999999999999999984
Q ss_pred CC-ccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEEeccccceeEEEECCCC---------
Q 011916 281 SS-DYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQQ--PTLRLTEHTAAVKAIAWSPHQ--------- 346 (475)
Q Consensus 281 ~~-~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~--------- 346 (475)
.. ..+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+. ....+..|...|.+++|+|++
T Consensus 87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 166 (297)
T 2pm7_B 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (297)
T ss_dssp SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---------
T ss_pred CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCC
Confidence 32 355678889999999999997 8899999999999999998763 245677899999999999973
Q ss_pred ---CcEEEEecCCCCCeEEEEECCCCc----eeeee-cCCCCeeEEEEcCCC---CeEEEEEecCCCeEEEEECCCCc--
Q 011916 347 ---SSLLASGGGTADRCIRFWNTSNGH----QLNSV-DTGSQVCNLAWSKNV---NELVSTHGYSQNQIMVWKYPSMA-- 413 (475)
Q Consensus 347 ---~~ll~sg~Gs~d~~I~iwd~~~~~----~~~~~-~~~~~v~~l~~s~~~---~~l~~~~g~~dg~I~iwd~~~~~-- 413 (475)
..++++|+ .|+.|++||+++++ ....+ .|...|.+++|+|++ .+|++ ++.|+.|+|||+.+..
T Consensus 167 ~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las--~s~D~~v~iWd~~~~~~~ 242 (297)
T 2pm7_B 167 TKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS--VSQDRTCIIWTQDNEQGP 242 (297)
T ss_dssp ---CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEESSTTSC
T ss_pred CCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEE--EECCCcEEEEEeCCCCCc
Confidence 23666665 89999999998876 44445 367889999999995 66777 8899999999997643
Q ss_pred -eEEEe--cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 414 -KVSTL--TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 414 -~~~~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
....+ ..|...|.+++|+|+|++|++++.|++|+||+...
T Consensus 243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 22233 46888999999999999999999999999999863
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-35 Score=297.76 Aligned_cols=288 Identities=20% Similarity=0.333 Sum_probs=250.8
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h 250 (475)
+.++.++++.+++++.|+.|++||+.+++....+. +|.+.|.+++|++++ +|++|+.||+|++||+.+++.+..+.+|
T Consensus 125 ~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h 202 (464)
T 3v7d_B 125 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGH 202 (464)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred EEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCC
Confidence 56788888888888999999999999999888776 899999999999988 9999999999999999999999999999
Q ss_pred CCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCc----------------------cEEEecCccCCEEEEEEcCCC
Q 011916 251 QTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSD----------------------YICKLAGHKSEVCGLKWSHDD 304 (475)
Q Consensus 251 ~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~----------------------~~~~~~~h~~~V~~l~~s~~~ 304 (475)
...|.+++|. +.+|++|+.||.|++||++.... ....+.+|...|.++ ++++
T Consensus 203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~ 280 (464)
T 3v7d_B 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHG 280 (464)
T ss_dssp SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEET
T ss_pred CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCC
Confidence 9999999984 47999999999999999985432 255778899999887 5678
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeE
Q 011916 305 RELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCN 383 (475)
Q Consensus 305 ~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~ 383 (475)
++|++|+.|+.|++||+++++.+..+.+|...|.+++|+|++..+++ |+ .|+.|++||+.+++++..+. +...|.+
T Consensus 281 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s-g~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS-AS--MDTTIRIWDLENGELMYTLQGHTALVGL 357 (464)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEE-EE--TTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEE-Ee--CCCcEEEEECCCCcEEEEEeCCCCcEEE
Confidence 89999999999999999999999999999999999999999996555 43 89999999999999998885 6788999
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC--cc
Q 011916 384 LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA--LV 461 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~--~~ 461 (475)
+.|+ ++++++ ++.||.|++||+.++....... |...+..++|++++.+|++++ ||.|++||+.+++.... ..
T Consensus 358 ~~~~--~~~l~s--~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~ 431 (464)
T 3v7d_B 358 LRLS--DKFLVS--AAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK 431 (464)
T ss_dssp EEEC--SSEEEE--EETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTT
T ss_pred EEEc--CCEEEE--EeCCCcEEEEECCCCceeeeec-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhcc
Confidence 9997 577887 8899999999999988776664 667788899999999999998 89999999999887654 34
Q ss_pred cCCccccccC
Q 011916 462 KDTSLWSLGR 471 (475)
Q Consensus 462 ~~~~v~s~~~ 471 (475)
+...++++..
T Consensus 432 ~~~~v~~v~~ 441 (464)
T 3v7d_B 432 DADQIWSVNF 441 (464)
T ss_dssp TCSEEEEEEE
T ss_pred CCCcEEEEEe
Confidence 4555665543
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=297.31 Aligned_cols=278 Identities=14% Similarity=0.290 Sum_probs=238.6
Q ss_pred CceeEEecCCC-C--EEEEEcCCeEEEEEC----CCCc------EEEEeeC---------CCCCcEEEEEEcCCCCEEEE
Q 011916 169 FYLNLVDWSSQ-N--VLAVGLGTCVYLWTA----SNSK------VTRLCDL---------GPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 169 ~~v~~l~ws~~-~--~la~~~~~~V~lw~~----~~~~------~~~~~~~---------~~~~~V~~v~~spdg~~la~ 226 (475)
-.+.+++|+|+ . +++++.++.|++|++ .+++ ....+.. +|.+.|++++|+|++++|++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 35788999986 4 455556899999999 8887 3433331 15679999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCC----------
Q 011916 227 GTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSE---------- 294 (475)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~---------- 294 (475)
|+.||.|++|| .+++.+..+.+|...|.+++|+ +.+|++++.|+.|++||+. .+..+..+..+...
T Consensus 126 ~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~ 203 (425)
T 1r5m_A 126 GVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVI-SGTVMQHFELKETGGSSINAENHS 203 (425)
T ss_dssp EETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETT-TTEEEEEECCC-------------
T ss_pred EeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECC-CCcEEEEeeccccCccceeecccc
Confidence 99999999999 7788889999999999999994 6899999999999999998 56677777777776
Q ss_pred -----EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 295 -----VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 295 -----V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
+.++.|++++ .+++++.|+.|++||+.+++.+..+..|...|.+++|+|++..+++ ++ .|+.|++||+.++
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~--~d~~i~i~d~~~~ 279 (425)
T 1r5m_A 204 GDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS-AS--DDGTLRIWHGGNG 279 (425)
T ss_dssp --CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE-EE--TTSCEEEECSSSB
T ss_pred CCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE-Ec--CCCEEEEEECCCC
Confidence 9999999875 6889999999999999999999999999999999999999995555 43 7999999999999
Q ss_pred ceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEE
Q 011916 370 HQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF 448 (475)
Q Consensus 370 ~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 448 (475)
+.+..+. +...+.+++|+|++ .+++ +..++.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++
T Consensus 280 ~~~~~~~~~~~~i~~~~~~~~~-~l~~--~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i 356 (425)
T 1r5m_A 280 NSQNCFYGHSQSIVSASWVGDD-KVIS--CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV 356 (425)
T ss_dssp SCSEEECCCSSCEEEEEEETTT-EEEE--EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccceEecCCCccEEEEEECCCC-EEEE--EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence 8888875 77889999999999 7776 778999999999999999999999999999999999999999999999999
Q ss_pred EecCCCC
Q 011916 449 WNVFPSL 455 (475)
Q Consensus 449 W~~~~~~ 455 (475)
|++....
T Consensus 357 ~~~~~~~ 363 (425)
T 1r5m_A 357 YDLKKLN 363 (425)
T ss_dssp EECHHHH
T ss_pred EECCCCc
Confidence 9998665
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=301.58 Aligned_cols=276 Identities=13% Similarity=0.155 Sum_probs=232.3
Q ss_pred eEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 172 NLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 172 ~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
..++|+++ .+++++.++.|++||..+++....+. ....+....|++++++|++|+.||.|++||+.+++....+.+
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLK--RADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSC--SCCEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred cceeeeecCCeEEEEEcCCcEEEEEecccceeeEEe--cCCceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 34777775 68888889999999998876544332 234555667899999999999999999999999999999899
Q ss_pred CCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 011916 250 HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT 327 (475)
Q Consensus 250 h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~ 327 (475)
|...|.+++|+ +++|++|+.|+.|++||++ ....+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 216 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTI 216 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCC-CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCcee
Confidence 99999999995 6799999999999999998 56677888999999999999999999999999999999999999988
Q ss_pred EEEecc---c---------------------cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--CCCCe
Q 011916 328 LRLTEH---T---------------------AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--TGSQV 381 (475)
Q Consensus 328 ~~~~~h---~---------------------~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--~~~~v 381 (475)
..+..| . ..+.+++|+|++..+++ ++ .|+.|++||+++++.+..+. +...+
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v 293 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIA-GH--VSGVITVHNVFSKEQTIQLPSKFTCSC 293 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEE-EE--TTSCEEEEETTTCCEEEEECCTTSSCE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEE-Ec--CCCeEEEEECCCCceeEEcccccCCCc
Confidence 888753 3 44455556788885554 43 79999999999999887774 56789
Q ss_pred eEEEEcCCCC-eEEEEEecCCCeEEEEECCCCce-EEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 382 CNLAWSKNVN-ELVSTHGYSQNQIMVWKYPSMAK-VSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 382 ~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~-~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.+++|+|++. +|++ |+.||.|++||+.+++. +..+.+ |...|.++.+ +++.+|++++.|+.|++|++.....
T Consensus 294 ~~~~~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 294 NSLTVDGNNANYIYA--GYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EEEEECSSCTTEEEE--EETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTC
T ss_pred eeEEEeCCCCCEEEE--EeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCC
Confidence 9999999999 7777 88999999999998754 677766 6677888755 5788999999999999999987543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=301.22 Aligned_cols=260 Identities=17% Similarity=0.316 Sum_probs=224.0
Q ss_pred EECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCC
Q 011916 193 WTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRD 270 (475)
Q Consensus 193 w~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~d 270 (475)
|+..+......+. +|.+.|++++|+|++++|++|+.||+|+|||+.+++....+..|...|.+++| ++.+|++|+.|
T Consensus 51 ~~~~~~~~~~~l~-gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d 129 (380)
T 3iz6_a 51 FNPTDLVCCRTLQ-GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD 129 (380)
T ss_dssp CCCCCCEEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS
T ss_pred cccceeEEeeccc-ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC
Confidence 4444444445554 89999999999999999999999999999999999999999999999999999 46899999999
Q ss_pred CcEEEEECCCCC------ccEEEecCccCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEE-----ecccccee
Q 011916 271 RNILQHDLRVSS------DYICKLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRL-----TEHTAAVK 338 (475)
Q Consensus 271 g~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd~~~~~~~~~~-----~~h~~~v~ 338 (475)
+.|++||+.... .....+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.+++.+..+ .+|...|.
T Consensus 130 ~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~ 209 (380)
T 3iz6_a 130 SACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209 (380)
T ss_dssp SCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE
T ss_pred CcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE
Confidence 999999986321 234567899999999999996 457999999999999999999988777 57899999
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE
Q 011916 339 AIAWSPHQSSLLASGGGTADRCIRFWNTS-NGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS 416 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~ 416 (475)
+++|++.+..++++|+ .|+.|++||++ .++.+..+ .|...|.+++|+|++++|++ |+.|+.|++||+.+++.+.
T Consensus 210 ~~~~~~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s--~s~D~~i~lwd~~~~~~~~ 285 (380)
T 3iz6_a 210 SLSINSLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGT--GSDDGTCRLFDMRTGHQLQ 285 (380)
T ss_dssp EEEECSSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEE--ECSSSCEEEEETTTTEEEE
T ss_pred EEEeecCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEE--EcCCCeEEEEECCCCcEEE
Confidence 9999885555777766 89999999998 44666666 47788999999999999998 8899999999999999988
Q ss_pred EecCCCc-------ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 417 TLTGHSL-------RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 417 ~l~~h~~-------~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
.+..+.. .|.+++|+|+|++|++|+.||.|++||+..+...
T Consensus 286 ~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~ 333 (380)
T 3iz6_a 286 VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV 333 (380)
T ss_dssp EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence 8865432 4899999999999999999999999999876644
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=293.80 Aligned_cols=285 Identities=22% Similarity=0.399 Sum_probs=250.8
Q ss_pred CceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 169 FYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
..+.++.++++.+++++.|+.|++||+.+++....+. +|.+.|.+++|+ +++|++|+.||.|++||+.+++.+..+.
T Consensus 120 ~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 196 (445)
T 2ovr_B 120 HVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLY 196 (445)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEc-CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEEC
Confidence 3456788888888889999999999999999887776 889999999997 6799999999999999999999999999
Q ss_pred CCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE
Q 011916 249 GHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL 328 (475)
Q Consensus 249 ~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~ 328 (475)
+|...|.+++|+++.|++|+.||.|++||++ .+..+..+.+|...|.++.| ++++|++|+.|+.|++||+++++.+.
T Consensus 197 ~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 273 (445)
T 2ovr_B 197 GHTSTVRCMHLHEKRVVSGSRDATLRVWDIE-TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH 273 (445)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEESS-SCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred CCCCcEEEEEecCCEEEEEeCCCEEEEEECC-CCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence 9999999999999999999999999999998 56778888999999999999 78899999999999999999999999
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
.+..|...|.+++| ++.. +++++ .|+.|++||+.+++++..+. +...+.++.++ ++.+++ |+.||.|++|
T Consensus 274 ~~~~~~~~v~~~~~--~~~~-l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--~~~dg~i~vw 344 (445)
T 2ovr_B 274 TLQGHTNRVYSLQF--DGIH-VVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVS--GNADSTVKIW 344 (445)
T ss_dssp EECCCSSCEEEEEE--CSSE-EEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEE--EETTSCEEEE
T ss_pred EecCCCCceEEEEE--CCCE-EEEEe--CCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEE--EeCCCeEEEE
Confidence 99999999999999 5664 44544 79999999999999988875 55667777764 667877 8899999999
Q ss_pred ECCCCceEEEecC---CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc------ccCCcccccc
Q 011916 408 KYPSMAKVSTLTG---HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL------VKDTSLWSLG 470 (475)
Q Consensus 408 d~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~------~~~~~v~s~~ 470 (475)
|+.+++.+..+.+ |...|.+++|+ +.+|++|+.||.|++||+..+.....+ .+...++++.
T Consensus 345 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 414 (445)
T 2ovr_B 345 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIR 414 (445)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEE
T ss_pred ECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEE
Confidence 9999999999986 88899999995 679999999999999999988766554 3344555554
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=311.95 Aligned_cols=264 Identities=9% Similarity=0.114 Sum_probs=214.4
Q ss_pred EcCCeEEEEECCCCcEEE----EeeCCCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCCee-----------
Q 011916 185 GLGTCVYLWTASNSKVTR----LCDLGPGDSVCSVQWTRE------GSYISVGTNLGQVQVWDGTQCKR----------- 243 (475)
Q Consensus 185 ~~~~~V~lw~~~~~~~~~----~~~~~~~~~V~~v~~spd------g~~la~g~~dg~v~iwd~~~~~~----------- 243 (475)
+.|+.|+||++.+++... .+. +|.+.|.+++|+|+ +.+||+|+.||+|+|||+.+++.
T Consensus 180 s~D~tI~iWd~~~~~~~~~~~~~l~-~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p 258 (524)
T 2j04_B 180 KHSSCIQIFKMNTSTLHCVKVQTIV-HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKP 258 (524)
T ss_dssp --CEEEEEEEEETTTCCEEEEEEEE-ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSC
T ss_pred CCCceEEEEEccCCCCCceEEEEEE-ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCc
Confidence 347789999998876421 122 56788999999996 57999999999999999986642
Q ss_pred eEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEE--EEcCCC-CEEEEEeCCCcEEEE
Q 011916 244 VRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGL--KWSHDD-RELASGGNDNQLLVW 319 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l--~~s~~~-~~lasg~~Dg~I~iw 319 (475)
...+.+|...|.+++|+ +..|++|+.||+|++||++........+.+|...|.++ .|++++ ++||+|+.|++|+||
T Consensus 259 ~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklW 338 (524)
T 2j04_B 259 SLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIF 338 (524)
T ss_dssp SEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEE
T ss_pred eEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEE
Confidence 24678899999999995 57999999999999999985555566788999999999 578887 899999999999999
Q ss_pred ECCCCceeEEEecccc--ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEE
Q 011916 320 NQHSQQPTLRLTEHTA--AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 320 d~~~~~~~~~~~~h~~--~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~ 396 (475)
|+++++++..+.+|.. .|.+++|+|++..++ +++ .|++|++||++++.++..+ .|...|.+++|+|+++.|++
T Consensus 339 D~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~-s~~--~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S- 414 (524)
T 2j04_B 339 NPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYI-YSD--GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA- 414 (524)
T ss_dssp CGGGHHHHCEEEEECSCCSCCCEEEETTTTEEE-EEC--SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE-
T ss_pred ECCCCCcccccccccccCcccceEeCCCcCeEE-EeC--CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE-
Confidence 9999887777777653 588999999998654 443 7999999999999886655 57889999999999999998
Q ss_pred EecCCCeEEEEECCC--------------------------------------------CceEEEecCCCcceEEEEECC
Q 011916 397 HGYSQNQIMVWKYPS--------------------------------------------MAKVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~--------------------------------------------~~~~~~l~~h~~~V~~l~~sp 432 (475)
|+.|+.|++||+.. +..+..+.+|...|.+++|+|
T Consensus 415 -gs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp 493 (524)
T 2j04_B 415 -GSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNE 493 (524)
T ss_dssp -EETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECC
T ss_pred -EECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCC
Confidence 88999999987421 112334557889999999999
Q ss_pred CCC---EEEEEeCCCCEEEEecCCC
Q 011916 433 DGQ---TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 433 dg~---~l~s~s~Dg~I~iW~~~~~ 454 (475)
++. .||+|+.||+|+||++...
T Consensus 494 ~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 494 TSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp STTTTTEEEEECTTSEEEEEECSCC
T ss_pred CCCccHHHHhhccCceEEEEEcccc
Confidence 954 9999999999999998754
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=285.39 Aligned_cols=244 Identities=21% Similarity=0.381 Sum_probs=209.0
Q ss_pred CCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE---EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCC
Q 011916 207 GPGD-SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR---TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 207 ~~~~-~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~---~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~ 280 (475)
+|.+ .|.+++|+|+|++||+|+.||+|+|||+.++.... ...+|...|.+++|+ +++|++|+.|++|++||+..
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~ 92 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQ 92 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECC
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccC
Confidence 6766 89999999999999999999999999998876432 236899999999995 68999999999999999974
Q ss_pred CC-ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEeccccceeEEEECCCCCcEEEEecCC
Q 011916 281 SS-DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ---PTLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 281 ~~-~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~---~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
.. ..+..+.+|...|.+++|+|++++|++|+.|+.|++||++.+. .+..+..|...|.+++|+|++..|++ ++
T Consensus 93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s-~s-- 169 (345)
T 3fm0_A 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLAS-AS-- 169 (345)
T ss_dssp C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEE-EE--
T ss_pred CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEE-Ee--
Confidence 43 4567889999999999999999999999999999999998764 45677789999999999999996555 43
Q ss_pred CCCeEEEEECCCCce--eeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC---------------CceEEEe
Q 011916 357 ADRCIRFWNTSNGHQ--LNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS---------------MAKVSTL 418 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~--~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~---------------~~~~~~l 418 (475)
.|+.|++||+.++.. ...+ .+...|.+++|+|++++|++ |+.|+.|++||... ...+..+
T Consensus 170 ~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s--~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T 3fm0_A 170 YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLAS--CSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247 (345)
T ss_dssp TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEE
T ss_pred CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEE--EeCCCeEEEeccccCCCCccceeeccCCccceeEEe
Confidence 899999999988753 3344 46788999999999999998 88999999999632 1334556
Q ss_pred cC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 419 TG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 419 ~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.+ |...|.+++|++++..|++++.|+.|++|++....
T Consensus 248 ~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~ 285 (345)
T 3fm0_A 248 SGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS 285 (345)
T ss_dssp CSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTS
T ss_pred cCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCC
Confidence 55 88999999999999999999999999999998654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=301.44 Aligned_cols=277 Identities=11% Similarity=0.160 Sum_probs=228.6
Q ss_pred CCCceeEEecCC-C--CEEEEEcCCeEEEEECCC---CcEE-EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 167 DDFYLNLVDWSS-Q--NVLAVGLGTCVYLWTASN---SKVT-RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 167 ~d~~v~~l~ws~-~--~~la~~~~~~V~lw~~~~---~~~~-~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+.-.|.+++|++ + .+++++.|+.|+|||+.+ +... .....+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~ 141 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVN 141 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEec
Confidence 345799999999 5 366667799999999876 4311 12223688999999999999999999999999999984
Q ss_pred ---CCeeeEEecC------------CCCceEEEEe----CCCEEEEEeCCCcEEEEECCCCCccEEEecC--ccCCEEEE
Q 011916 240 ---QCKRVRTFGG------------HQTRAGVLAW----NSRILSSGSRDRNILQHDLRVSSDYICKLAG--HKSEVCGL 298 (475)
Q Consensus 240 ---~~~~~~~~~~------------h~~~v~~l~~----~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l 298 (475)
+++.+..+.+ +...+.++.+ ++.+|++|+.|+.|++||++ ....+..+.. |...|.++
T Consensus 142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~~ 220 (437)
T 3gre_A 142 HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR-TLERLQIIENSPRHGAVSSI 220 (437)
T ss_dssp EEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT-TCCEEEEEECCGGGCCEEEE
T ss_pred cccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeEEEccCCCCCceEEE
Confidence 4444433321 5566777774 37899999999999999998 5667777777 89999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-ccccceeEEEECC----CCCcEEEEecCCCCCeEEEEECCCCceee
Q 011916 299 KWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-EHTAAVKAIAWSP----HQSSLLASGGGTADRCIRFWNTSNGHQLN 373 (475)
Q Consensus 299 ~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-~h~~~v~~l~~sp----~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~ 373 (475)
+|+|++++|++|+.||.|++||+++++++..+. .|...|.+++|+| ++. ++++++ .|+.|++||+.+++++.
T Consensus 221 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~-~l~s~~--~dg~i~iwd~~~~~~~~ 297 (437)
T 3gre_A 221 CIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSV-IVVGGS--SKTFLTIWNFVKGHCQY 297 (437)
T ss_dssp EECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEE-EEEEES--TTEEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCcc-EEEEEc--CCCcEEEEEcCCCcEEE
Confidence 999999999999999999999999999988886 7888999997775 444 566655 89999999999998877
Q ss_pred eec---------------------------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC------
Q 011916 374 SVD---------------------------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG------ 420 (475)
Q Consensus 374 ~~~---------------------------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~------ 420 (475)
.+. +...|.+++|+ ++++|++ |+.|+.|++||+.+++.+..+.+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~ 374 (437)
T 3gre_A 298 AFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLT--DEATSSIVMFSLNELSSSKAVISPSRFSD 374 (437)
T ss_dssp EEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEE--EGGGTEEEEEETTCGGGCEEEECC--CCC
T ss_pred EEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEe--cCCCCeEEEEECCCcccceEEecccccCc
Confidence 764 33458889999 7778887 88999999999999887777665
Q ss_pred -------------------------------CCcceEEEEECCC--CCEEEEEeCCCCEEEEe
Q 011916 421 -------------------------------HSLRVLYLATSPD--GQTIVTGAGDETLRFWN 450 (475)
Q Consensus 421 -------------------------------h~~~V~~l~~spd--g~~l~s~s~Dg~I~iW~ 450 (475)
|...|++++|+++ +.+|++|+.||.|+||+
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 375 VFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 78999999999999995
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-36 Score=301.92 Aligned_cols=281 Identities=17% Similarity=0.283 Sum_probs=234.9
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCC----CcEEEEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECC
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASN----SKVTRLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~----~~~~~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~ 239 (475)
....+.+++|+++ .+++++.++.|++|++.+ .+....+. +|...|.+++|+|+ +++|++|+.||.|++||+.
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~ 144 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS-NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMN 144 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTT
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc-CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECC
Confidence 3456889999986 356666799999999988 33444443 78999999999998 8999999999999999998
Q ss_pred CCe------eeE---EecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCc------cCCEEEEEEc
Q 011916 240 QCK------RVR---TFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGH------KSEVCGLKWS 301 (475)
Q Consensus 240 ~~~------~~~---~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h------~~~V~~l~~s 301 (475)
+++ ... .+..|...|.+++|+ +.+|++++.||.|++||++ ....+..+..| ...|.+++|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~ 223 (416)
T 2pm9_A 145 KCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLK-AKKEVIHLSYTSPNSGIKQQLSVVEWH 223 (416)
T ss_dssp TTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETT-TTEEEEEECCCCCSSCCCCCEEEEEEC
T ss_pred CCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECC-CCCcceEEeccccccccCCceEEEEEC
Confidence 876 333 346799999999995 4799999999999999998 56666777766 7899999999
Q ss_pred CCC-CEEEEEeCCC---cEEEEECCCC-ceeEEEe-ccccceeEEEECC-CCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 302 HDD-RELASGGNDN---QLLVWNQHSQ-QPTLRLT-EHTAAVKAIAWSP-HQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 302 ~~~-~~lasg~~Dg---~I~iwd~~~~-~~~~~~~-~h~~~v~~l~~sp-~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
|++ .+|++++.|+ .|++||++++ .++..+. .|...|.+++|+| ++..| ++++ .|+.|++||+.+++++..
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l-~s~~--~dg~v~~wd~~~~~~~~~ 300 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL-LSSG--RDNTVLLWNPESAEQLSQ 300 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCE-EEEE--SSSEEEEECSSSCCEEEE
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeE-EEEe--CCCCEEEeeCCCCcccee
Confidence 987 6999999998 9999999986 6677777 8999999999999 66654 4444 799999999999999888
Q ss_pred ec-CCCCeeEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEec---------------------------------
Q 011916 375 VD-TGSQVCNLAWSKNV-NELVSTHGYSQNQIMVWKYPSMAKVSTLT--------------------------------- 419 (475)
Q Consensus 375 ~~-~~~~v~~l~~s~~~-~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--------------------------------- 419 (475)
+. +...|.+++|+|++ ..|++ ++.|+.|++||+.+........
T Consensus 301 ~~~~~~~v~~~~~s~~~~~~l~s--~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (416)
T 2pm9_A 301 FPARGNWCFKTKFAPEAPDLFAC--ASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQA 378 (416)
T ss_dssp EECSSSCCCCEEECTTCTTEEEE--CCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCC
T ss_pred ecCCCCceEEEEECCCCCCEEEE--EecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccC
Confidence 75 67889999999999 67777 8899999999998765322111
Q ss_pred --CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 420 --GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 420 --~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.|...+.+++|+|||++|++++.|++|+||++.+.
T Consensus 379 ~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 379 PTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 16677889999999999999999999999999864
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-34 Score=290.19 Aligned_cols=273 Identities=18% Similarity=0.305 Sum_probs=246.9
Q ss_pred CCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 168 DFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
...+.+++|+++.+++++.|+.|++||+.+++....+. +|...|.+++|+ +++|++|+.||.|++||+.+++.+..+
T Consensus 159 ~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~ 235 (445)
T 2ovr_B 159 TGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL 235 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred CCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence 34578899998888888999999999999998887775 789999999995 678999999999999999999999999
Q ss_pred cCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 011916 248 GGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT 327 (475)
Q Consensus 248 ~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~ 327 (475)
.+|...|.+++|++.+|++|+.||.|++||++ ....+..+.+|...|.++.| ++.++++|+.|+.|++||+++++.+
T Consensus 236 ~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~ 312 (445)
T 2ovr_B 236 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE-TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI 312 (445)
T ss_dssp ECCSSCEEEEEECSSCEEEEETTSCEEEEEGG-GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE
T ss_pred cCCcccEEEEEECCCEEEEEcCCCEEEEEECC-CCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE
Confidence 99999999999999999999999999999998 56778889999999999999 7889999999999999999999999
Q ss_pred EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec----CCCCeeEEEEcCCCCeEEEEEecCCCe
Q 011916 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQ 403 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~ 403 (475)
..+..|...+.++.+++ . ++++++ .|+.|++||+.+++++..+. +...|.+++|+ ++++++ |+.||.
T Consensus 313 ~~~~~~~~~v~~~~~~~--~-~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s--~~~dg~ 383 (445)
T 2ovr_B 313 HTLTGHQSLTSGMELKD--N-ILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT--SSDDGT 383 (445)
T ss_dssp EEECCCCSCEEEEEEET--T-EEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE--EETTSE
T ss_pred EEEcCCcccEEEEEEeC--C-EEEEEe--CCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEE--EeCCCe
Confidence 99999999999998854 4 555554 89999999999999998885 66789999996 577887 889999
Q ss_pred EEEEECCCCceEEEe-----cCCCcceEEEEECCCCCEEEEEeCCCC----EEEEecCCCC
Q 011916 404 IMVWKYPSMAKVSTL-----TGHSLRVLYLATSPDGQTIVTGAGDET----LRFWNVFPSL 455 (475)
Q Consensus 404 I~iwd~~~~~~~~~l-----~~h~~~V~~l~~spdg~~l~s~s~Dg~----I~iW~~~~~~ 455 (475)
|++||+.+++.+..+ .+|.+.|.+++|+|++.+|++|+.||+ |.+||+....
T Consensus 384 v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~~ 444 (445)
T 2ovr_B 384 VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVDM 444 (445)
T ss_dssp EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCCC
T ss_pred EEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCCC
Confidence 999999999998888 468899999999999999999999998 9999998653
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=293.05 Aligned_cols=277 Identities=13% Similarity=0.147 Sum_probs=230.5
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
.+....|+++ .+++++.++.|++||+.+++....+. +|...|.+++|+|++++|++|+.||.|++||+.+++.+..+
T Consensus 99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~ 177 (420)
T 3vl1_A 99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL 177 (420)
T ss_dssp EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE
T ss_pred ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE
Confidence 3444566665 46666679999999999988776654 78999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecC---ccCCEEE---------------------EEEc
Q 011916 248 GGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAG---HKSEVCG---------------------LKWS 301 (475)
Q Consensus 248 ~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~---h~~~V~~---------------------l~~s 301 (475)
.+|...|.+++|+ +.+|++++.|+.|++||++ .+..+..+.. |...|.+ ++|+
T Consensus 178 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFG 256 (420)
T ss_dssp ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSS
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEc
Confidence 9999999999994 6899999999999999998 5566666654 3344444 4557
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeeec--C
Q 011916 302 HDDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LNSVD--T 377 (475)
Q Consensus 302 ~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~~~~--~ 377 (475)
|++++|++|+.||.|++||+++++.+..+.. |...|.+++|+|++..++++++ .|+.|++||+++++. +..+. +
T Consensus 257 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~ 334 (420)
T 3vl1_A 257 TYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGY--ENGMLAQWDLRSPECPVGEFLINE 334 (420)
T ss_dssp CTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEEEST
T ss_pred CCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEe--CCCeEEEEEcCCCcCchhhhhccC
Confidence 8999999999999999999999988777654 8899999999999996666665 899999999998754 55553 5
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC---------ceEEEecCCCcceEEEEECCCCC---EEEEEeCCCC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM---------AKVSTLTGHSLRVLYLATSPDGQ---TIVTGAGDET 445 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~---------~~~~~l~~h~~~V~~l~~spdg~---~l~s~s~Dg~ 445 (475)
...+.++.| ++++.|++ ++.|+.|++|++... .....+..|...|.+++|+|+++ .|++++.+|.
T Consensus 335 ~~~v~~~~~-~~~~~l~s--~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~ 411 (420)
T 3vl1_A 335 GTPINNVYF-AAGALFVS--SGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNF 411 (420)
T ss_dssp TSCEEEEEE-ETTEEEEE--ETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTE
T ss_pred CCCceEEEe-CCCCEEEE--ecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCce
Confidence 667777755 57778887 889999999998763 22334667899999999999999 7888888999
Q ss_pred EEEEecCC
Q 011916 446 LRFWNVFP 453 (475)
Q Consensus 446 I~iW~~~~ 453 (475)
+.+|++..
T Consensus 412 ~~~~~~~~ 419 (420)
T 3vl1_A 412 CALYNLSN 419 (420)
T ss_dssp EEEEESCC
T ss_pred EEEEeccC
Confidence 99999865
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=288.91 Aligned_cols=255 Identities=23% Similarity=0.446 Sum_probs=217.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCC------------------ceEEEEeC--CCEEEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT------------------RAGVLAWN--SRILSS 266 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~------------------~v~~l~~~--~~~l~s 266 (475)
+|...|.+++|+|+|++||+|+ ++.++||++.+++.+..+..|.. .|.+++|+ +++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6889999999999999999987 58999999999998888765542 48899994 689999
Q ss_pred EeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECC-C
Q 011916 267 GSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP-H 345 (475)
Q Consensus 267 gs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~ 345 (475)
|+.|+.|++||+. ..+.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++....+. +...+.+++|+| +
T Consensus 141 ~~~d~~i~iwd~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~ 218 (393)
T 1erj_A 141 GAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGD 218 (393)
T ss_dssp EETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTT
T ss_pred EcCCCeEEEEECC-CCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCC
Confidence 9999999999998 567788899999999999999999999999999999999999998877765 567899999999 6
Q ss_pred CCcEEEEecCCCCCeEEEEECCCCceeeee--------cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-----
Q 011916 346 QSSLLASGGGTADRCIRFWNTSNGHQLNSV--------DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----- 412 (475)
Q Consensus 346 ~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----- 412 (475)
+. ++++|+ .|+.|++||+.+++.+..+ .+...|.+++|+|++++|++ |+.|+.|++||+.+.
T Consensus 219 ~~-~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s--~s~d~~v~~wd~~~~~~~~~ 293 (393)
T 1erj_A 219 GK-YIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS--GSLDRSVKLWNLQNANNKSD 293 (393)
T ss_dssp CC-EEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE--EETTSEEEEEEC--------
T ss_pred CC-EEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEE--EeCCCEEEEEECCCCCCccc
Confidence 66 566655 8999999999999887766 35678999999999999998 889999999999753
Q ss_pred -------ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc-cCCccccc
Q 011916 413 -------AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV-KDTSLWSL 469 (475)
Q Consensus 413 -------~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~ 469 (475)
.....+.+|...|.+++|++++.+|++|+.|+.|++||+..+.....+. +...++++
T Consensus 294 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v 358 (393)
T 1erj_A 294 SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 358 (393)
T ss_dssp -------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred ccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEE
Confidence 3456778999999999999999999999999999999998877655443 34445444
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=299.18 Aligned_cols=275 Identities=18% Similarity=0.223 Sum_probs=214.8
Q ss_pred CceeEEecCCC-CEEEEE-cCCeEEEEECCCCc--EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--
Q 011916 169 FYLNLVDWSSQ-NVLAVG-LGTCVYLWTASNSK--VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-- 242 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~-~~~~V~lw~~~~~~--~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-- 242 (475)
-.|.+++|+++ ++++++ .++.|+||++.++. ....+. +|...|.+++|+|++++|++|+.||.|+|||+.+++
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~ 90 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW 90 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence 35888999987 555555 79999999999884 444443 789999999999999999999999999999999877
Q ss_pred -eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCc--cEEEecC-ccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 243 -RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSD--YICKLAG-HKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 243 -~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~-h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
....+.+|...|.+++|+ +++|++|+.|+.|++||++.... ....+.. |...|.+++|+|++++|++++.|+.|
T Consensus 91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i 170 (377)
T 3dwl_C 91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKA 170 (377)
T ss_dssp CCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCE
T ss_pred eeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEE
Confidence 677788999999999995 68999999999999999985432 4667777 99999999999999999999999999
Q ss_pred EEEECC------------------CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce----eee
Q 011916 317 LVWNQH------------------SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ----LNS 374 (475)
Q Consensus 317 ~iwd~~------------------~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~----~~~ 374 (475)
++||+. .++++..+ .|...|.+++|+|++++|++.+ .|+.|++||+.+++. +..
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~---~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG---HDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE---TTTEEC-CEECSTTSCEEECCC
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe---CCCcEEEEECCCCCCcceeeEe
Confidence 999985 24455556 8999999999999999666543 799999999999987 555
Q ss_pred e-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------------------------------eE------EE
Q 011916 375 V-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA------------------------------KV------ST 417 (475)
Q Consensus 375 ~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------------------------------~~------~~ 417 (475)
+ .+...|.+++|+|++++|++ |..++.+ +|+..... .+ ..
T Consensus 247 ~~~~~~~v~~~~~s~~~~~l~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (377)
T 3dwl_C 247 VKLSQLPLRSLLWANESAIVAA--GYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRST 323 (377)
T ss_dssp EECSSSCEEEEEEEETTEEEEE--ESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------------
T ss_pred ecCCCCceEEEEEcCCCCEEEE--EcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccccccccccc
Confidence 5 46678999999999998887 6555555 77654111 00 00
Q ss_pred e----------------cCCCcceEEEEECCCC-C---EEEEEeCCCCEEEEec
Q 011916 418 L----------------TGHSLRVLYLATSPDG-Q---TIVTGAGDETLRFWNV 451 (475)
Q Consensus 418 l----------------~~h~~~V~~l~~spdg-~---~l~s~s~Dg~I~iW~~ 451 (475)
+ ..|...|+++++.++. . .|+||+.||.|+|||+
T Consensus 324 ~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 324 FRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 1 1299999999976543 3 6999999999999986
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=284.61 Aligned_cols=286 Identities=21% Similarity=0.279 Sum_probs=232.2
Q ss_pred CCCceeEEecCC-C-C-EEEEEcCCeEEEEECCCCcEEEEee------------CCCCCcEEEEEEcC-CCCEEEEEeCC
Q 011916 167 DDFYLNLVDWSS-Q-N-VLAVGLGTCVYLWTASNSKVTRLCD------------LGPGDSVCSVQWTR-EGSYISVGTNL 230 (475)
Q Consensus 167 ~d~~v~~l~ws~-~-~-~la~~~~~~V~lw~~~~~~~~~~~~------------~~~~~~V~~v~~sp-dg~~la~g~~d 230 (475)
+.-.+++++|+| + + +++++.|+.|++|++.+++...... .+|...|.+++|+| ++.+|++++.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 345688999998 5 3 6666779999999999876544332 14889999999999 78899999999
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEeC-----CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-----SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
|.|++||+.+++.+..+. +...+.++.|. +.++++++.|+.|.+||++ ....+..+..|...|.+++|+|++.
T Consensus 122 ~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~~v~~~~~~~~~~ 199 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK-SGSCSHILQGHRQEILAVSWSPRYD 199 (408)
T ss_dssp SEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS-SSCCCEEECCCCSCEEEEEECSSCT
T ss_pred CeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC-CcceeeeecCCCCcEEEEEECCCCC
Confidence 999999999999888876 77788888884 3599999999999999998 5677788899999999999999998
Q ss_pred -EEEEEeCCCcEEEEECCCCc-eeEEE---------------eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 306 -ELASGGNDNQLLVWNQHSQQ-PTLRL---------------TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 306 -~lasg~~Dg~I~iwd~~~~~-~~~~~---------------~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
+|++|+.||.|++||++.+. .+..+ ..|...|.+++|+|++.++++.+ .|+.|++||+.+
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~vwd~~~ 276 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG---TDNRMRLWNSSN 276 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE---TTSCEEEEETTT
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec---CCCeEEEEECCC
Confidence 59999999999999998765 34444 56889999999999999666543 799999999999
Q ss_pred CceeeeecC------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 369 GHQLNSVDT------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 369 ~~~~~~~~~------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
++....... ...+........+..+++ +..++.|++||+.+++.+..+.+|...|++++|+|++++|++++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 354 (408)
T 4a11_B 277 GENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF--VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSR 354 (408)
T ss_dssp CCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE--EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEET
T ss_pred CccceeccccccccccccceeEEecCCCceEEE--EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECC
Confidence 877654421 112222223334455555 557899999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCCC
Q 011916 443 DETLRFWNVFPSLKAPA 459 (475)
Q Consensus 443 Dg~I~iW~~~~~~~~~~ 459 (475)
||.|++|++...+....
T Consensus 355 dg~i~iw~~~~~~~~~~ 371 (408)
T 4a11_B 355 DCNILAWVPSLYEPVPD 371 (408)
T ss_dssp TSCEEEEEECC------
T ss_pred CCeEEEEeCCCCCccCC
Confidence 99999999998876554
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-35 Score=294.35 Aligned_cols=281 Identities=19% Similarity=0.292 Sum_probs=233.2
Q ss_pred CceeEEecCCCCEEE---EEcCCeEEEEECCCCcE----EEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC
Q 011916 169 FYLNLVDWSSQNVLA---VGLGTCVYLWTASNSKV----TRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 169 ~~v~~l~ws~~~~la---~~~~~~V~lw~~~~~~~----~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~ 240 (475)
...+.++++++.+.. ++.+|.|+||++..... ...+ .+|.+.|++++|+| ++++|++|+.||.|+|||+.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCT
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccC
Confidence 345568888875333 35589999999966422 1222 27899999999999 999999999999999999998
Q ss_pred C-------eeeEEecCCCCceEEEEeC--C-CEEEEEeCCCcEEEEECCCCCccEEEe--cCccCCEEEEEEcCCCCEEE
Q 011916 241 C-------KRVRTFGGHQTRAGVLAWN--S-RILSSGSRDRNILQHDLRVSSDYICKL--AGHKSEVCGLKWSHDDRELA 308 (475)
Q Consensus 241 ~-------~~~~~~~~h~~~v~~l~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~~~~~la 308 (475)
+ +.+..+.+|...|.+++|+ + ++|++++.||.|++||++ .+..+..+ ..|...|.+++|+|++++|+
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG-TGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT-TTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC-CCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 7 6678899999999999995 3 689999999999999998 56777777 78999999999999999999
Q ss_pred EEeCCCcEEEEECCCCceeEEE-eccccc-eeEEEECCCCCcEEEEe-cCCCCCeEEEEECCCCce---eeeecCCCCee
Q 011916 309 SGGNDNQLLVWNQHSQQPTLRL-TEHTAA-VKAIAWSPHQSSLLASG-GGTADRCIRFWNTSNGHQ---LNSVDTGSQVC 382 (475)
Q Consensus 309 sg~~Dg~I~iwd~~~~~~~~~~-~~h~~~-v~~l~~sp~~~~ll~sg-~Gs~d~~I~iwd~~~~~~---~~~~~~~~~v~ 382 (475)
+++.|+.|++||+++++.+..+ ..|.+. +.+++|+|++. ++++| .++.|+.|++||+.+++. ...+.+...+.
T Consensus 193 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~ 271 (402)
T 2aq5_A 193 TSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK-ILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVL 271 (402)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE-EEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCE
T ss_pred EEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc-EEEEeccCCCCceEEEEcCccccCCceEEeccCCCcee
Confidence 9999999999999999998888 678776 89999999988 45554 113799999999998765 33345678899
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCce-EEEecC--CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK-VSTLTG--HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-~~~l~~--h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+++|+|+++.|+++ |..|+.|++||+.+++. +..+.. |...|.+++|+|++.++++ .|+.+++|++..+.
T Consensus 272 ~~~~s~~~~~l~~~-g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~ 344 (402)
T 2aq5_A 272 LPFFDPDTNIVYLC-GKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERK 344 (402)
T ss_dssp EEEEETTTTEEEEE-ETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTE
T ss_pred EEEEcCCCCEEEEE-EcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCc
Confidence 99999999999764 66799999999998874 444443 5689999999999998764 57799999998754
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-34 Score=275.80 Aligned_cols=241 Identities=20% Similarity=0.305 Sum_probs=213.2
Q ss_pred CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----CeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEEC
Q 011916 207 GPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQ-----CKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDL 278 (475)
Q Consensus 207 ~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~-----~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~ 278 (475)
+|.+.|.+++|+|++ ++|++|+.||+|++|++.. +..+..+.+|...|.+++| ++.+|++|+.|++|++||+
T Consensus 15 gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~ 94 (319)
T 3frx_A 15 GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94 (319)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 899999999999965 8999999999999999853 3457788999999999999 4689999999999999999
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCC-----cEEEEe
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS-----SLLASG 353 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~-----~ll~sg 353 (475)
+ .++.+..+.+|...|.+++|+|++.+|++|+.|+.|++||++. ..+..+.+|...|.+++|+|... .+++++
T Consensus 95 ~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~ 172 (319)
T 3frx_A 95 A-TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISA 172 (319)
T ss_dssp T-TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEE
T ss_pred C-CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEE
Confidence 8 6677888999999999999999999999999999999999974 56778889999999999999643 256665
Q ss_pred cCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC
Q 011916 354 GGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP 432 (475)
Q Consensus 354 ~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp 432 (475)
+ .|+.|++||+.+++....+ .|...|.+++|+|++++|++ |+.||.|++||+.+++.+..+..+ ..|.+++|+|
T Consensus 173 ~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp 247 (319)
T 3frx_A 173 G--NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIAS--AGKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP 247 (319)
T ss_dssp E--TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEE--EETTCEEEEEETTTTEEEEEEECC-SCEEEEEECS
T ss_pred e--CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEE--EeCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcC
Confidence 5 8999999999999887776 47789999999999999999 889999999999999999888754 6799999999
Q ss_pred CCCEEEEEeCCCCEEEEecCCCC
Q 011916 433 DGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
++.+|++++.+ .+++|++....
T Consensus 248 ~~~~la~~~~~-~i~v~~~~~~~ 269 (319)
T 3frx_A 248 NRYWLAAATAT-GIKVFSLDPQY 269 (319)
T ss_dssp SSSEEEEEETT-EEEEEEETTEE
T ss_pred CCCEEEEEcCC-CcEEEEeCcCe
Confidence 99999988765 49999987653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=292.13 Aligned_cols=277 Identities=10% Similarity=0.217 Sum_probs=223.5
Q ss_pred CCCCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCc-----------EEEEeeCCCC------------CcEEEEEEcC
Q 011916 165 LQDDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSK-----------VTRLCDLGPG------------DSVCSVQWTR 219 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~-----------~~~~~~~~~~------------~~V~~v~~sp 219 (475)
+.+.-.|.+++|+++ . +++++.|+.|+||++.+++ ....+. +|. +.|.+++|+|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcC
Confidence 445567999999997 4 5555679999999999876 344454 777 8899999999
Q ss_pred CC--CEEEEEeCCCeEEEEECCCCeee---------------------------------------EE-ecCCCCceEEE
Q 011916 220 EG--SYISVGTNLGQVQVWDGTQCKRV---------------------------------------RT-FGGHQTRAGVL 257 (475)
Q Consensus 220 dg--~~la~g~~dg~v~iwd~~~~~~~---------------------------------------~~-~~~h~~~v~~l 257 (475)
++ .+|++++.||.|++||+.+++.. .. ..+|...|.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 79999999999999998764432 12 36899999999
Q ss_pred EeC--CCEEEEEeCCCcEEEEECCCCCccEE-------EecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCce-
Q 011916 258 AWN--SRILSSGSRDRNILQHDLRVSSDYIC-------KLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQP- 326 (475)
Q Consensus 258 ~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~-------~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~- 326 (475)
+|+ +++|++| .|+.|++||++....... .+.+|...|.+++|+|++ ++|++|+.||.|++||+++++.
T Consensus 184 ~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 184 SINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALC 262 (447)
T ss_dssp EECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSS
T ss_pred EEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccc
Confidence 995 6899998 899999999984444443 256899999999999998 9999999999999999999886
Q ss_pred ---eEEEecccc------------ceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-CceeeeecCCCC----------
Q 011916 327 ---TLRLTEHTA------------AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVDTGSQ---------- 380 (475)
Q Consensus 327 ---~~~~~~h~~------------~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~~~~~---------- 380 (475)
+..+..|.. .|.+++|+|++.+|+ +++ . +.|++||+++ ++++..+.....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-~~~--~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMM-TRD--Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEE-EEE--S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEE-Eee--C-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 788888876 899999999999655 443 5 9999999997 888777754433
Q ss_pred ------eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC---------------------------------C
Q 011916 381 ------VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG---------------------------------H 421 (475)
Q Consensus 381 ------v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---------------------------------h 421 (475)
+..++|+|++++|++ |+.||.|++||+.+++.+. +.+ +
T Consensus 339 ~~~i~~~~~~~~s~~~~~l~s--~s~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSDSVVMT--GSYNNFFRMFDRNTKRDIT-LEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDF 415 (447)
T ss_dssp TSGGGCCCCEEECTTSSEEEE--ECSTTEEEEEETTTCCEEE-EECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCT
T ss_pred ccccccceEEEECCCCCEEEE--eccCCEEEEEEcCCCccee-eeecccccccccccCCccccccCCccccccccccccc
Confidence 334999999999988 8899999999999887653 222 3
Q ss_pred CcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 422 SLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 422 ~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
...|..++|+|++.+||+++.++ +++|.-
T Consensus 416 ~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 416 NKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred CCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 45689999999999999998776 777764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=277.74 Aligned_cols=247 Identities=22% Similarity=0.382 Sum_probs=202.1
Q ss_pred cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEe-cC-CCCceEEEEeC--CCEEEEEeCCCc
Q 011916 199 KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--KRVRTF-GG-HQTRAGVLAWN--SRILSSGSRDRN 272 (475)
Q Consensus 199 ~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--~~~~~~-~~-h~~~v~~l~~~--~~~l~sgs~dg~ 272 (475)
+....+. +|.+.|.+++|+++ +||+|+.||+|+|||+..+ +.+..+ .+ |...|.+++|+ +.+|++|+.|++
T Consensus 5 ~~~~~~~-~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~ 81 (330)
T 2hes_X 5 NLIKSLK-LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST 81 (330)
T ss_dssp EEEEEEE-CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccceeec-cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence 3444554 89999999999987 9999999999999999875 455566 44 99999999995 689999999999
Q ss_pred EEEEECCCC------CccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC----CceeEEEeccccceeEEEE
Q 011916 273 ILQHDLRVS------SDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS----QQPTLRLTEHTAAVKAIAW 342 (475)
Q Consensus 273 I~iwd~~~~------~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~----~~~~~~~~~h~~~v~~l~~ 342 (475)
|++||+... ...+..+.+|...|.+++|+|++++||+|+.|++|++||++. .+.+..+.+|...|.+++|
T Consensus 82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~ 161 (330)
T 2hes_X 82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161 (330)
T ss_dssp EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEE
T ss_pred EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEE
Confidence 999998532 245677889999999999999999999999999999999953 2456778899999999999
Q ss_pred CCCCCcEEEEecCCCCCeEEEEECCCC--ceeeee-cCCCCeeEEEEcCC--CCeEEEEEecCCCeEEEEECCCC-----
Q 011916 343 SPHQSSLLASGGGTADRCIRFWNTSNG--HQLNSV-DTGSQVCNLAWSKN--VNELVSTHGYSQNQIMVWKYPSM----- 412 (475)
Q Consensus 343 sp~~~~ll~sg~Gs~d~~I~iwd~~~~--~~~~~~-~~~~~v~~l~~s~~--~~~l~~~~g~~dg~I~iwd~~~~----- 412 (475)
+|++.. +++++ .|+.|++||..++ +++..+ .|...|.+++|+|+ +..|++ |+.|+.|++||+...
T Consensus 162 ~p~~~~-l~s~s--~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 162 HPSEAL-LASSS--YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS--GSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp CSSSSE-EEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE--EETTSCEEEEEEEEECTTSC
T ss_pred CCCCCE-EEEEc--CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE--EeCCCeEEEEEecCCCcccc
Confidence 999985 45544 8999999998776 566666 46789999999998 556776 889999999998654
Q ss_pred ---ceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 413 ---AKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 413 ---~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.....+.+ |...|.+++|++++ +|++++.||+|++|++..+
T Consensus 237 ~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 237 QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 34455555 99999999999765 8999999999999998765
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=286.42 Aligned_cols=244 Identities=20% Similarity=0.355 Sum_probs=202.8
Q ss_pred CCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECC
Q 011916 206 LGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 206 ~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~ 279 (475)
.+|.+.|++++|+|+|++||+|+.|++|+|||+.+++ .+..+.+|...|.+++|. +++|++|+.|++|++||++
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~ 89 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence 3899999999999999999999999999999998774 467889999999999994 6899999999999999998
Q ss_pred CCC-ccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCce---eEEEeccccceeEEEECCCC-------
Q 011916 280 VSS-DYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQQP---TLRLTEHTAAVKAIAWSPHQ------- 346 (475)
Q Consensus 280 ~~~-~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~------- 346 (475)
... .....+.+|...|.+++|+|+ +.+|++|+.|+.|++||++.+.. ...+..|...|.+++|+|+.
T Consensus 90 ~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~ 169 (316)
T 3bg1_A 90 NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID 169 (316)
T ss_dssp SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-----
T ss_pred CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccc
Confidence 432 356678899999999999997 78999999999999999987632 33456789999999999983
Q ss_pred ---------CcEEEEecCCCCCeEEEEECCCC---ceeeee-cCCCCeeEEEEcCCC----CeEEEEEecCCCeEEEEEC
Q 011916 347 ---------SSLLASGGGTADRCIRFWNTSNG---HQLNSV-DTGSQVCNLAWSKNV----NELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 347 ---------~~ll~sg~Gs~d~~I~iwd~~~~---~~~~~~-~~~~~v~~l~~s~~~----~~l~~~~g~~dg~I~iwd~ 409 (475)
..++++|+ .|+.|++||+.++ +++..+ .|...|.+++|+|++ +.|++ ++.|+.|++|++
T Consensus 170 ~~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las--~s~D~~v~iw~~ 245 (316)
T 3bg1_A 170 HPSGQKPNYIKRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS--CSQDGRVFIWTC 245 (316)
T ss_dssp -CCSCCCCCCCBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE--EETTCEEEEEEC
T ss_pred cccccCccccceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE--EcCCCeEEEEEc
Confidence 13566654 8999999999765 344444 367789999999987 66777 889999999998
Q ss_pred CCCc----eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 410 PSMA----KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 410 ~~~~----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
.+.. ....+..|...|.+++|+|+|++|++++.|++|+||+...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 246 DDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp SSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred cCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 7631 2234556889999999999999999999999999999863
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=275.71 Aligned_cols=243 Identities=23% Similarity=0.372 Sum_probs=203.8
Q ss_pred CCCCcEEEEEE-----cC-CCCEEEEEeCCCeEEEEECCC-------CeeeEEecCCCCceEEEEeC--CCEEEEEeCCC
Q 011916 207 GPGDSVCSVQW-----TR-EGSYISVGTNLGQVQVWDGTQ-------CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDR 271 (475)
Q Consensus 207 ~~~~~V~~v~~-----sp-dg~~la~g~~dg~v~iwd~~~-------~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg 271 (475)
+|.+.|++++| ++ ++++|++|+.||+|+|||+.+ +.....+.+|...|.+++|+ +.+|++|+.|+
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~ 98 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDK 98 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTS
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCC
Confidence 89999999999 77 999999999999999999874 34567788999999999995 68999999999
Q ss_pred cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe---ccccceeEEEECCCCC-
Q 011916 272 NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT---EHTAAVKAIAWSPHQS- 347 (475)
Q Consensus 272 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~- 347 (475)
+|++||++ .+..+..+.+|...|.+++|+|++++|++|+.|+.|++||+... ...... .|...|.+++|+|++.
T Consensus 99 ~v~lwd~~-~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~ 176 (343)
T 2xzm_R 99 TLRLWDLR-TGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKS 176 (343)
T ss_dssp EEEEEETT-SSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCS
T ss_pred cEEEEECC-CCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeecccccc
Confidence 99999998 56778889999999999999999999999999999999999843 333333 6888999999999873
Q ss_pred --------cEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEE
Q 011916 348 --------SLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-MAKVST 417 (475)
Q Consensus 348 --------~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~ 417 (475)
.++++++ .|+.|++||. +++....+ .+...|.+++|+|++++|++ |+.|+.|++||+.. ......
T Consensus 177 ~~~~~~~~~~l~s~~--~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~s--gs~dg~v~iwd~~~~~~~~~~ 251 (343)
T 2xzm_R 177 ANKVQPFAPYFASVG--WDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIAT--GGKDKKLLIWDILNLTYPQRE 251 (343)
T ss_dssp CSCCCSSCCEEEEEE--TTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEE--EETTCEEEEEESSCCSSCSEE
T ss_pred ccccCCCCCEEEEEc--CCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEE--EcCCCeEEEEECCCCccccee
Confidence 3566655 8999999995 44554444 57789999999999999999 88999999999944 334444
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
+. +...|.+++|+|++.+|+++ .|+.|++|++.+.....
T Consensus 252 ~~-~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 252 FD-AGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp EE-CSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCS
T ss_pred ec-CCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCc
Confidence 43 45679999999999887654 68889999998766543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=308.46 Aligned_cols=283 Identities=18% Similarity=0.276 Sum_probs=251.1
Q ss_pred CCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.-.+.+++|+|+ . +++++.+|.|+|||+.+++....+. .|...|.+++|+|++++|++|+.||.|+|||+.+++.+.
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~ 91 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV 91 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 345899999997 4 5555668999999999999888876 789999999999999999999999999999999999999
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECC
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~ 322 (475)
.+.+|...|.+++|+ +.+|++++.||.|++||+.........+.+|...|.+++|+| +++.|++++.||.|++||+.
T Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~ 171 (814)
T 3mkq_A 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171 (814)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETT
T ss_pred EEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 999999999999995 679999999999999999866677888899999999999999 88999999999999999999
Q ss_pred CCceeEEEeccc-cceeEEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEe
Q 011916 323 SQQPTLRLTEHT-AAVKAIAWSP--HQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHG 398 (475)
Q Consensus 323 ~~~~~~~~~~h~-~~v~~l~~sp--~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g 398 (475)
.+.....+..+. ..+..++|+| ++..++ +++ .|+.|++||+.+++.+..+. +...|.+++|+|+++.+++ +
T Consensus 172 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-~~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~ 246 (814)
T 3mkq_A 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMI-TAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS--G 246 (814)
T ss_dssp CSSCSEEEECCCTTCCCEEEECCSTTCCEEE-EEC--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE--E
T ss_pred CCcceeEEecCCCCCEEEEEEEECCCCCEEE-EEe--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE--E
Confidence 888887777655 8899999999 887544 444 79999999999999888886 6788999999999999998 8
Q ss_pred cCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC--EEEEEeCCCCEEEEecCCCCCC
Q 011916 399 YSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ--TIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+.||.|++||+.+++.+..+..|...|.+++|+|+|. +++++ .|+.+.+|++......
T Consensus 247 ~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 306 (814)
T 3mkq_A 247 SEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG-FDNGFTVLSLGNDEPT 306 (814)
T ss_dssp ETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEE-ETTEEEEEECSCCSCC
T ss_pred eCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEE-eCCCEEEEEcCCCCce
Confidence 8999999999999999999999999999999999987 45544 5677899998765543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=274.47 Aligned_cols=246 Identities=18% Similarity=0.329 Sum_probs=213.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----eeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEEC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC----KRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDL 278 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~----~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~ 278 (475)
+|.+.|++++|+|++++||+|+.||.|+|||+.++ +....+.+|...|.+++|+ +.+|++|+.||.|++||+
T Consensus 9 gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 9 GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 89999999999999999999999999999999876 5677788999999999994 689999999999999999
Q ss_pred CCCC--------ccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCceeEEEe-------------cccc
Q 011916 279 RVSS--------DYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQQPTLRLT-------------EHTA 335 (475)
Q Consensus 279 ~~~~--------~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~~~~~~~~-------------~h~~ 335 (475)
+... ..+..+..|...|.+++|+|+ +++|++++.|+.|++||+++++.+..+. .|..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQ 168 (351)
T ss_dssp CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSC
T ss_pred CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccc
Confidence 8543 457778899999999999999 9999999999999999999876543332 5778
Q ss_pred ceeEEEECCC---CCcEEEEecCCCCCeEEEEECCCCce--eeee-cCCCCeeEEEEcCCC----CeEEEEEecCCCeEE
Q 011916 336 AVKAIAWSPH---QSSLLASGGGTADRCIRFWNTSNGHQ--LNSV-DTGSQVCNLAWSKNV----NELVSTHGYSQNQIM 405 (475)
Q Consensus 336 ~v~~l~~sp~---~~~ll~sg~Gs~d~~I~iwd~~~~~~--~~~~-~~~~~v~~l~~s~~~----~~l~~~~g~~dg~I~ 405 (475)
.+.+++|+|+ +. ++++++ .|+.+.+|+...++. +..+ .+...|.+++|+|++ ++|++ |+.||.|+
T Consensus 169 ~~~~~~~~p~~~~~~-~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s--~~~dg~i~ 243 (351)
T 3f3f_A 169 SDFCLSWCPSRFSPE-KLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT--GCKDGRIR 243 (351)
T ss_dssp CCEEEEECCCSSSCC-EEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE--EETTSCEE
T ss_pred ceeEEEeccCCCCCc-EEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE--EcCCCeEE
Confidence 8999999997 66 555544 799998888887765 3444 367889999999998 67777 88999999
Q ss_pred EEECCCC----------------------------------------------ceEEEecCCCcceEEEEECCCCCEEEE
Q 011916 406 VWKYPSM----------------------------------------------AKVSTLTGHSLRVLYLATSPDGQTIVT 439 (475)
Q Consensus 406 iwd~~~~----------------------------------------------~~~~~l~~h~~~V~~l~~spdg~~l~s 439 (475)
+||+.++ +.+..+.+|...|++++|+|++++|++
T Consensus 244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS 323 (351)
T ss_dssp EEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE
T ss_pred EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE
Confidence 9999764 667788899999999999999999999
Q ss_pred EeCCCCEEEEecCCCCCC
Q 011916 440 GAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 440 ~s~Dg~I~iW~~~~~~~~ 457 (475)
++.||.|+||++..+...
T Consensus 324 ~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 324 AGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp EETTSCEEEEEECTTSCE
T ss_pred ecCCCcEEEEecCcCcch
Confidence 999999999999876544
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=297.61 Aligned_cols=281 Identities=16% Similarity=0.278 Sum_probs=248.5
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCC----cEEEEeeCCCCCc-EEEEEEcC--CCCEEEEEeCCCeEEEEEC
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNS----KVTRLCDLGPGDS-VCSVQWTR--EGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~----~~~~~~~~~~~~~-V~~v~~sp--dg~~la~g~~dg~v~iwd~ 238 (475)
....+.+++|+|+ ++++++.++.|++|++.++ +....+. +|... |++++|+| ++++|++|+.||.|+|||+
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~ 95 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGW 95 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEe-cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeC
Confidence 3456788999997 6788878999999999988 7666665 78899 99999999 9999999999999999999
Q ss_pred CCC--------eeeEEecCCCCceEEEEeC--CCEEEEEeCC----CcEEEEECCCCCccEEEecCccCCEEEEEEcCCC
Q 011916 239 TQC--------KRVRTFGGHQTRAGVLAWN--SRILSSGSRD----RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD 304 (475)
Q Consensus 239 ~~~--------~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~ 304 (475)
.++ +.+..+..|...|.+++|+ +++|++++.+ +.|.+||. ...+..+.+|...|.+++|+|++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~---~~~~~~~~~~~~~v~~~~~~~~~ 172 (615)
T 1pgu_A 96 TFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS---GNSLGEVSGHSQRINACHLKQSR 172 (615)
T ss_dssp EEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT---CCEEEECCSCSSCEEEEEECSSS
T ss_pred CCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC---CCcceeeecCCccEEEEEECCCC
Confidence 754 7777888999999999994 6899999988 68888883 45778889999999999999999
Q ss_pred C-EEEEEeCCCcEEEEECCCCceeEEEecccc---ceeEEEECCC-CCcEEEEecCCCCCeEEEEECCCCceeeee----
Q 011916 305 R-ELASGGNDNQLLVWNQHSQQPTLRLTEHTA---AVKAIAWSPH-QSSLLASGGGTADRCIRFWNTSNGHQLNSV---- 375 (475)
Q Consensus 305 ~-~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~---~v~~l~~sp~-~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~---- 375 (475)
. .|++++.|+.|++||+.+++.+..+..|.. .|.+++|+|+ +..+++ ++ .|+.|++||+.+++.+..+
T Consensus 173 ~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~--~dg~i~vwd~~~~~~~~~~~~~~ 249 (615)
T 1pgu_A 173 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT-VG--SDRKISCFDGKSGEFLKYIEDDQ 249 (615)
T ss_dssp SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE-EE--TTCCEEEEETTTCCEEEECCBTT
T ss_pred CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEE-Ee--CCCeEEEEECCCCCEeEEecccc
Confidence 8 899999999999999999999999999999 9999999999 875554 43 7999999999999999988
Q ss_pred -cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC----CcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 376 -DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH----SLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 376 -~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h----~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
.+...|.+++|+ +++.|++ ++.|+.|++||+.+++.+..+..+ ...+.++.|+ ++.+|++++.||.|++||
T Consensus 250 ~~~~~~v~~~~~~-~~~~l~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d 325 (615)
T 1pgu_A 250 EPVQGGIFALSWL-DSQKFAT--VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYE 325 (615)
T ss_dssp BCCCSCEEEEEES-SSSEEEE--EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred cccCCceEEEEEc-CCCEEEE--EcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEE
Confidence 678899999999 9999998 778999999999999999988876 4678888886 899999999999999999
Q ss_pred cCCCCCCC
Q 011916 451 VFPSLKAP 458 (475)
Q Consensus 451 ~~~~~~~~ 458 (475)
+..+....
T Consensus 326 ~~~~~~~~ 333 (615)
T 1pgu_A 326 LGHDEVLK 333 (615)
T ss_dssp TTEEEEEE
T ss_pred CCCCcEEE
Confidence 98755433
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-33 Score=283.53 Aligned_cols=274 Identities=19% Similarity=0.269 Sum_probs=239.2
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCCCee
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWT--REGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~s--pdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
+...+.+++|+++ .+++++.|+.|++||+.+++....+. +|...|.+++|+ +++++|++|+.||.|++||+.++..
T Consensus 161 h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~ 239 (464)
T 3v7d_B 161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239 (464)
T ss_dssp CSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC
T ss_pred CCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc
Confidence 4557899999987 56677779999999999999887775 789999999998 5789999999999999999987652
Q ss_pred -----------------------eEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEE
Q 011916 244 -----------------------VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKW 300 (475)
Q Consensus 244 -----------------------~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 300 (475)
+..+.+|...|.++..++++|++|+.||.|++||++ ....+..+.+|...|.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~-~~~~~~~~~~~~~~v~~~~~ 318 (464)
T 3v7d_B 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA-QMKCLYILSGHTDRIYSTIY 318 (464)
T ss_dssp C------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEE
T ss_pred cccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECC-CCcEEEEecCCCCCEEEEEE
Confidence 556789999999999999999999999999999998 67788889999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCC
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQ 380 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~ 380 (475)
+|++++|++|+.||.|++||+++++++..+.+|...|.+++|++ . .+++++ .|+.|++||+.++.......+...
T Consensus 319 ~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~--~-~l~s~s--~dg~v~vwd~~~~~~~~~~~~~~~ 393 (464)
T 3v7d_B 319 DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--K-FLVSAA--ADGSIRGWDANDYSRKFSYHHTNL 393 (464)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS--S-EEEEEE--TTSEEEEEETTTCCEEEEEECTTC
T ss_pred cCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC--C-EEEEEe--CCCcEEEEECCCCceeeeecCCCC
Confidence 99999999999999999999999999999999999999999984 4 555554 899999999999998888888888
Q ss_pred eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 381 VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST-LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+..++|+++++.+++ |. +|.|++||+.+++.+.. +..|...|.+++|+ ++.++++++.||.+.+|-+
T Consensus 394 ~~~~~~~~~~~~l~~--~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 394 SAITTFYVSDNILVS--GS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp CCEEEEEECSSEEEE--EE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred ccEEEEEeCCCEEEE--ec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 999999999999888 65 89999999999999886 66799999999997 3344555566766555543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=317.94 Aligned_cols=279 Identities=22% Similarity=0.335 Sum_probs=251.7
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+...+.+++|+++ . +++++.|+.|++||+.+++....+. +|.+.|.+++|+|+|++|++|+.||.|+|||+.+++.+
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~ 692 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLV 692 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceE
Confidence 3456899999997 3 5556779999999999999888776 89999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 245 RTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
..+.+|...|.+++|+ +.++++|+.|+.|++||++ .+.....+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 693 ~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd 771 (1249)
T 3sfz_A 693 HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771 (1249)
T ss_dssp EEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT-SSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC-CcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEe
Confidence 9999999999999994 3589999999999999998 5677888999999999999999999999999999999999
Q ss_pred CCCCceeEEEec-------------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--cCCCCeeEEE
Q 011916 321 QHSQQPTLRLTE-------------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLA 385 (475)
Q Consensus 321 ~~~~~~~~~~~~-------------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~ 385 (475)
+.+++....+.. +...+.+++|+|++..++++ .++.+.+||+.++..+..+ .+...+.+++
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~ 847 (1249)
T 3sfz_A 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVA----AKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD 847 (1249)
T ss_dssp GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEE----ETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEE----cCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence 998877665532 23478899999999966665 3789999999999988877 4678899999
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
|+|+++.+++ ++.++.|++||+.++..+..+.+|...|.+++|+|+|.+|++++.||+|++|++..
T Consensus 848 ~sp~~~~l~~--~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 848 FSPYDHLAVI--ALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp ECSSTTEEEE--ECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred EcCCCCEEEE--EeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 9999999999 88999999999999999999999999999999999999999999999999999864
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=284.84 Aligned_cols=255 Identities=21% Similarity=0.437 Sum_probs=219.1
Q ss_pred CCcEEEEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCC----------CeeeEEecCCCCceEEEEeCC--C-
Q 011916 197 NSKVTRLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQ----------CKRVRTFGGHQTRAGVLAWNS--R- 262 (475)
Q Consensus 197 ~~~~~~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~----------~~~~~~~~~h~~~v~~l~~~~--~- 262 (475)
++++.......|.+.|++++|+|+ +.+||+|+.+|.|+|||+.+ .+.+..+.+|...|.+++|++ .
T Consensus 116 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 195 (430)
T 2xyi_A 116 CGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG 195 (430)
T ss_dssp --CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT
T ss_pred CCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC
Confidence 334443444478899999999997 78999999999999999976 677888899999999999963 4
Q ss_pred EEEEEeCCCcEEEEECCCCCc------cEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCC---ceeEEEec
Q 011916 263 ILSSGSRDRNILQHDLRVSSD------YICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQ---QPTLRLTE 332 (475)
Q Consensus 263 ~l~sgs~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~---~~~~~~~~ 332 (475)
+|++|+.||.|++||+..... ....+.+|...|.+++|+| ++.+|++++.|+.|++||++++ +.+..+..
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~ 275 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA 275 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec
Confidence 999999999999999985322 1456778999999999999 7889999999999999999987 57788889
Q ss_pred cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-Cceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
|...|.+++|+|++.+++++|+ .|+.|++||+++ +.++..+. +...|.+++|+|+++.++++ ++.|+.|++||+.
T Consensus 276 ~~~~v~~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s-~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 276 HTAEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS-SGTDRRLHVWDLS 352 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE-EETTSCCEEEEGG
T ss_pred CCCCeEEEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE-EeCCCcEEEEeCC
Confidence 9999999999999998888876 899999999998 45566664 77899999999999765444 6789999999997
Q ss_pred C--------------CceEEEecCCCcceEEEEECCCCC-EEEEEeCCCCEEEEecCCC
Q 011916 411 S--------------MAKVSTLTGHSLRVLYLATSPDGQ-TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 411 ~--------------~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW~~~~~ 454 (475)
. .+.+..+.+|...|.+++|+|++. +|++++.||.|+||++...
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 353 KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp GTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 6 367788889999999999999999 9999999999999999754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=277.66 Aligned_cols=247 Identities=18% Similarity=0.324 Sum_probs=211.1
Q ss_pred EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEE
Q 011916 202 RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQ 275 (475)
Q Consensus 202 ~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~--~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~i 275 (475)
..+. +|.+.|++++|+|++++||+|+.||.|+|||+. +.+.+..+.+|...|.+++|+ +.+|++|+.||.|++
T Consensus 5 ~~~~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i 83 (379)
T 3jrp_A 5 VIAN-AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 83 (379)
T ss_dssp CCEE-ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred EEec-CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence 3444 789999999999999999999999999999998 667788899999999999995 789999999999999
Q ss_pred EECCCCC-ccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCCc--eeEEEeccccceeEEEECC------
Q 011916 276 HDLRVSS-DYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQQ--PTLRLTEHTAAVKAIAWSP------ 344 (475)
Q Consensus 276 wd~~~~~-~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~~--~~~~~~~h~~~v~~l~~sp------ 344 (475)
||++... ..+..+..|...|.+++|+|+ +.+|++++.|+.|++||++... ....+..|...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9998432 266778889999999999999 9999999999999999999773 4456678999999999999
Q ss_pred -------CCCcEEEEecCCCCCeEEEEECCCCcee----eee-cCCCCeeEEEEcCC---CCeEEEEEecCCCeEEEEEC
Q 011916 345 -------HQSSLLASGGGTADRCIRFWNTSNGHQL----NSV-DTGSQVCNLAWSKN---VNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 345 -------~~~~ll~sg~Gs~d~~I~iwd~~~~~~~----~~~-~~~~~v~~l~~s~~---~~~l~~~~g~~dg~I~iwd~ 409 (475)
++. ++++++ .|+.|++||++++... ..+ .+...|.+++|+|+ +++|++ ++.||.|++||+
T Consensus 164 ~~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s--~~~dg~i~iwd~ 238 (379)
T 3jrp_A 164 GEHNGTKESR-KFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQ 238 (379)
T ss_dssp ------CTTC-EEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EETTSCEEEEEE
T ss_pred ccccCCCCCC-EEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE--EeCCCEEEEEeC
Confidence 466 455544 8999999999877533 333 36788999999999 788888 789999999999
Q ss_pred CCCc---eEEEe--cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 410 PSMA---KVSTL--TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 410 ~~~~---~~~~l--~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.++. ....+ ..|...|.+++|+|+|++|++++.||.|++|++...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 8864 22223 348899999999999999999999999999999843
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=309.19 Aligned_cols=296 Identities=12% Similarity=0.178 Sum_probs=228.6
Q ss_pred CCceeEEecCCCC-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--
Q 011916 168 DFYLNLVDWSSQN-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV-- 244 (475)
Q Consensus 168 d~~v~~l~ws~~~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~-- 244 (475)
...|.+++|+++. +++++.|+.|+|||+.+++....+. +.+.|++++|+|++++|++|+.||.|++||+.+++..
T Consensus 58 ~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~ 135 (902)
T 2oaj_A 58 RSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSF 135 (902)
T ss_dssp CCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 4568999999976 7777889999999999998877764 5688999999999999999999999999999988764
Q ss_pred ---------EEecCCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccEEEecCc------------------cCC
Q 011916 245 ---------RTFGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAGH------------------KSE 294 (475)
Q Consensus 245 ---------~~~~~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h------------------~~~ 294 (475)
..+.+|...|.+++|++ ..|++|+.||.| +||++ ....+..+..| ...
T Consensus 136 ~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~ 213 (902)
T 2oaj_A 136 KLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV-ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK 213 (902)
T ss_dssp EECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT-TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCC
T ss_pred eeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC-CCceEEEEecccCCcCCCcccccccccccCCC
Confidence 23467999999999975 589999999999 99998 55666666655 577
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--Ee---c-------------cccceeEEEEC----CCCCcE---
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLR--LT---E-------------HTAAVKAIAWS----PHQSSL--- 349 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~--~~---~-------------h~~~v~~l~~s----p~~~~l--- 349 (475)
|.+++|+|+|++||+|+.|+.|++||+++++++.. +. . |...|.+++|+ |++..+
T Consensus 214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~s 293 (902)
T 2oaj_A 214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLIS 293 (902)
T ss_dssp EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEE
T ss_pred eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEe
Confidence 99999999999999999999999999987766542 10 1 22345555552 222122
Q ss_pred --------------------------------------------------------------------------------
Q 011916 350 -------------------------------------------------------------------------------- 349 (475)
Q Consensus 350 -------------------------------------------------------------------------------- 349 (475)
T Consensus 294 g~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~d 373 (902)
T 2oaj_A 294 HKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGN 373 (902)
T ss_dssp EECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETT
T ss_pred CCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCC
Confidence
Q ss_pred ----------------------------------------------------------------------------EEEe
Q 011916 350 ----------------------------------------------------------------------------LASG 353 (475)
Q Consensus 350 ----------------------------------------------------------------------------l~sg 353 (475)
+++|
T Consensus 374 g~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSg 453 (902)
T 2oaj_A 374 GEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITG 453 (902)
T ss_dssp SCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEE
T ss_pred CcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEe
Confidence 2222
Q ss_pred cCCCCCeEEEEECCCCceee----ee--------cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC---------
Q 011916 354 GGTADRCIRFWNTSNGHQLN----SV--------DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM--------- 412 (475)
Q Consensus 354 ~Gs~d~~I~iwd~~~~~~~~----~~--------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~--------- 412 (475)
+ .|++|++||+.++.... .. .+...|.+++|+|++++|++ |+.||.|+|||+.++
T Consensus 454 s--~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAs--gs~DgtV~lwd~~~~~~~~~~~~~ 529 (902)
T 2oaj_A 454 H--SNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAV--SIETGDVVLFKYEVNQFYSVENRP 529 (902)
T ss_dssp E--TTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEE--EETTSCEEEEEEEECCC-------
T ss_pred c--CCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEE--EecCcEEEEEEecCccccCccccC
Confidence 2 45555555555442110 00 24457999999999999999 889999999999765
Q ss_pred ------------------------------------ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 413 ------------------------------------AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 413 ------------------------------------~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+++..+.+|.+.|++|+|+||| +||+|+.|++|+|||+.....
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~ 608 (902)
T 2oaj_A 530 ESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAI 608 (902)
T ss_dssp --------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEE
T ss_pred CCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeE
Confidence 2467888999999999999999 999999999999999876543
Q ss_pred CC-----Cc--ccCCccccccCc
Q 011916 457 AP-----AL--VKDTSLWSLGRT 472 (475)
Q Consensus 457 ~~-----~~--~~~~~v~s~~~~ 472 (475)
.. .. .+...|+++.++
T Consensus 609 ~~~~~~~~~~~gh~~~V~sv~Fs 631 (902)
T 2oaj_A 609 IYMENIREISGAQSACVTCIEFV 631 (902)
T ss_dssp EEEEEGGGTCSSCCCCEEEEEEE
T ss_pred EEEeehhHhccccccceEEEEEE
Confidence 21 11 344557766654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=293.36 Aligned_cols=275 Identities=16% Similarity=0.233 Sum_probs=228.7
Q ss_pred ceeEEecCCC---CEEEEEcCCeEEEEECCCCcEEEEeeC---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 170 YLNLVDWSSQ---NVLAVGLGTCVYLWTASNSKVTRLCDL---GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 170 ~v~~l~ws~~---~~la~~~~~~V~lw~~~~~~~~~~~~~---~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
.+.+++|+++ .+++++.++.|++||+.+++....+.. .|...|.+++|+ ++++|++++.||.|++||+.+++.
T Consensus 208 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 208 FVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp CEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE
T ss_pred eEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE
Confidence 6889999987 366667799999999999998877743 788999999999 999999999999999999999999
Q ss_pred eEEecCC----CCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC---------------
Q 011916 244 VRTFGGH----QTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD--------------- 303 (475)
Q Consensus 244 ~~~~~~h----~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~--------------- 303 (475)
+..+..+ ...+.++.| ++.++++++.||.|++||+. ....+..+.+|...|.+++| |+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~-~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 287 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELG-HDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETT-EEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTT
T ss_pred EEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECC-CCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEc
Confidence 9998876 367778888 78999999999999999997 35555555555554444444 22
Q ss_pred --------------------------------------------------------------------------------
Q 011916 304 -------------------------------------------------------------------------------- 303 (475)
Q Consensus 304 -------------------------------------------------------------------------------- 303 (475)
T Consensus 365 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (615)
T 1pgu_A 365 SSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR 444 (615)
T ss_dssp TEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred hhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc
Confidence
Q ss_pred -----------CCEEEEEeC-CCcEEEEECCCCcee-EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc
Q 011916 304 -----------DRELASGGN-DNQLLVWNQHSQQPT-LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH 370 (475)
Q Consensus 304 -----------~~~lasg~~-Dg~I~iwd~~~~~~~-~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~ 370 (475)
+++|++++. |+.|++||+..++.. ..+..|...|.+++|+|++++|++ ++ .|+.|++||+.+++
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~-~~--~dg~i~iw~~~~~~ 521 (615)
T 1pgu_A 445 LNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA-GD--VMGKILLYDLQSRE 521 (615)
T ss_dssp CSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE-EE--TTSCEEEEETTTTE
T ss_pred cCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEE-cC--CCCeEEEeeCCCCc
Confidence 344555555 666666666655443 455668899999999999995555 43 79999999999999
Q ss_pred eeeeec--CCCCeeEEEEcC----------CCCeEEEEEecCCCeEEEEECCCC-ceEEEecCCCcceEEEEECCCCCEE
Q 011916 371 QLNSVD--TGSQVCNLAWSK----------NVNELVSTHGYSQNQIMVWKYPSM-AKVSTLTGHSLRVLYLATSPDGQTI 437 (475)
Q Consensus 371 ~~~~~~--~~~~v~~l~~s~----------~~~~l~~~~g~~dg~I~iwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~l 437 (475)
.+..+. +...|.+++|+| ++++|++ ++.||.|++||+.++ +.+..+.+|...|++++|+|+++ |
T Consensus 522 ~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~--~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l 598 (615)
T 1pgu_A 522 VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVAT--GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-L 598 (615)
T ss_dssp EEECCSCCCSSCEEEEEECCCC------CCSCCEEEE--EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-E
T ss_pred ceeEeecCCCCceeEEEEcCccccccccccCCCEEEE--EcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-e
Confidence 998876 788999999999 9999998 889999999999998 78889999999999999999999 9
Q ss_pred EEEeCCCCEEEEecCC
Q 011916 438 VTGAGDETLRFWNVFP 453 (475)
Q Consensus 438 ~s~s~Dg~I~iW~~~~ 453 (475)
++++.||+|++|++..
T Consensus 599 ~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 599 VSSGADACIKRWNVVL 614 (615)
T ss_dssp EEEETTSCEEEEEEC-
T ss_pred EEecCCceEEEEeeec
Confidence 9999999999999975
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=279.17 Aligned_cols=280 Identities=13% Similarity=0.128 Sum_probs=212.2
Q ss_pred CCCceeEEecCCC-CEEEEEcC--------CeEEEEECCCCcE--------EEEeeC-CCCCcEEEEEEcCCCCEEEEEe
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLG--------TCVYLWTASNSKV--------TRLCDL-GPGDSVCSVQWTREGSYISVGT 228 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~--------~~V~lw~~~~~~~--------~~~~~~-~~~~~V~~v~~spdg~~la~g~ 228 (475)
-.|.|.+++|+|+ .+|++|.+ +.|++|++..+.. ...+.+ ++.+.|.+++++ ++.+++|.
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 3567999999997 45555432 2599999876532 122223 567788887764 56677664
Q ss_pred -----------CCCeEEEEECCCCee----eEEe-----cCCCCceEEEEe--CCCEEEEE--eCCCcEEEEECCCCCcc
Q 011916 229 -----------NLGQVQVWDGTQCKR----VRTF-----GGHQTRAGVLAW--NSRILSSG--SRDRNILQHDLRVSSDY 284 (475)
Q Consensus 229 -----------~dg~v~iwd~~~~~~----~~~~-----~~h~~~v~~l~~--~~~~l~sg--s~dg~I~iwd~~~~~~~ 284 (475)
.|+.+++|++.+... +... ..+...+.+++| +|++|+++ +.|++|+|||++ ....
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~-~~~~ 169 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS-DLTE 169 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT-TTEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC-CCcE
Confidence 467899998765422 1111 134456778888 56776644 478999999998 5555
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecCCCCC---
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTADR--- 359 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~--- 359 (475)
+..+. |...|.+++|+|||++|++++. +.+.+|+..+++.+.. ...|...|.+++|+|++..+++.+ .|+
T Consensus 170 ~~~~~-~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s---~d~~~~ 244 (365)
T 4h5i_A 170 KFEIE-TRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS---LKKGKG 244 (365)
T ss_dssp EEEEE-CSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE---ESSSCC
T ss_pred EEEeC-CCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe---cCCcce
Confidence 55554 7788999999999999999985 4577777777765543 345888999999999999766654 344
Q ss_pred -eEEEEECCCCcee----eee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe-cCCCcceEEEEECC
Q 011916 360 -CIRFWNTSNGHQL----NSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL-TGHSLRVLYLATSP 432 (475)
Q Consensus 360 -~I~iwd~~~~~~~----~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l-~~h~~~V~~l~~sp 432 (475)
.+++|++..+... ..+ .+...|.+++|+|+|++|++ |+.|+.|+|||+.+++.+..+ .+|...|++|+|+|
T Consensus 245 ~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~las--gs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp 322 (365)
T 4h5i_A 245 IVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVL--ASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP 322 (365)
T ss_dssp EEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEE--EETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT
T ss_pred eEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEE--EcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC
Confidence 6889998776542 222 46678999999999999999 889999999999999999885 78999999999999
Q ss_pred CCCEEEEEeCCCCEEEEecCCCCC
Q 011916 433 DGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
||++||||+.|++|+||++.....
T Consensus 323 dg~~laS~S~D~tvrvw~ip~~~~ 346 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIKLPLNYA 346 (365)
T ss_dssp TSCEEEEEETTSEEEEEECCTTTT
T ss_pred CCCEEEEEeCCCeEEEEEcCCCCc
Confidence 999999999999999999965443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=271.90 Aligned_cols=272 Identities=13% Similarity=0.088 Sum_probs=229.1
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCc----EEEEeeCCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEC-
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSK----VTRLCDLGPGDSVCSVQWTREGS-YISVGTNLGQVQVWDG- 238 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~----~~~~~~~~~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~- 238 (475)
+.-.|.+++|+++ .+++++.++.|++|++.++. ..... +|...|.+++|+|+++ +|++|+.||.|++||+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~ 87 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI 87 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence 3456889999986 36666779999999999887 43333 7889999999999999 9999999999999999
Q ss_pred CCCeeeEEecC--CCCceEEEEeC-CCEEEEEeCCCcEEEEECCCC--------CccEEEecCccCCEEEEEEcCCCCEE
Q 011916 239 TQCKRVRTFGG--HQTRAGVLAWN-SRILSSGSRDRNILQHDLRVS--------SDYICKLAGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 239 ~~~~~~~~~~~--h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~--------~~~~~~~~~h~~~V~~l~~s~~~~~l 307 (475)
.+++. ..+.+ |...|.+++|+ +.+|++++.|+.|++||++.. ...+..+. |...|.+++|++++ +
T Consensus 88 ~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l 163 (342)
T 1yfq_A 88 GSPSF-QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--L 163 (342)
T ss_dssp SSSSE-EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--E
T ss_pred cCCce-EeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--E
Confidence 77655 67788 99999999997 799999999999999999730 33333344 88999999999887 9
Q ss_pred EEEeCCCcEEEEECCC-Cce--eEEEeccccceeEEEECC-CCCcEEEEecCCCCCeEEEEECCCC------ceeeeecC
Q 011916 308 ASGGNDNQLLVWNQHS-QQP--TLRLTEHTAAVKAIAWSP-HQSSLLASGGGTADRCIRFWNTSNG------HQLNSVDT 377 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~-~~~--~~~~~~h~~~v~~l~~sp-~~~~ll~sg~Gs~d~~I~iwd~~~~------~~~~~~~~ 377 (475)
++++.|+.|++||++. +.. ......|...|.+++|+| ++..+++ ++ .|+.|++|++... +....+..
T Consensus 164 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~-~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~ 240 (342)
T 1yfq_A 164 IVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC-SS--IDGRVAVEFFDDQGDDYNSSKRFAFRC 240 (342)
T ss_dssp EEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE-EE--TTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred EEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE-Ee--cCCcEEEEEEcCCCcccccccceeeec
Confidence 9999999999999998 543 334456888999999999 9885555 43 7999999999876 66666542
Q ss_pred ----------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC-CcceEEEEECCCCCEEEEEeCCCC-
Q 011916 378 ----------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH-SLRVLYLATSPDGQTIVTGAGDET- 445 (475)
Q Consensus 378 ----------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~s~Dg~- 445 (475)
...|.+++|+|++++|++ ++.||.|++||+.+++.+..+.+| ...|.+++ |++++|++++.||+
T Consensus 241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~ 316 (342)
T 1yfq_A 241 HRLNLKDTNLAYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTF 316 (342)
T ss_dssp CCCCTTCCSSCCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHH
T ss_pred ccccccccccceeEEEEEEcCCCCEEEE--ecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcc
Confidence 238999999999999998 889999999999999999999998 99999999 99999999999998
Q ss_pred EEEEec
Q 011916 446 LRFWNV 451 (475)
Q Consensus 446 I~iW~~ 451 (475)
.+.|..
T Consensus 317 ~~~~~~ 322 (342)
T 1yfq_A 317 KTNAAI 322 (342)
T ss_dssp HHCSSS
T ss_pred cccccc
Confidence 555553
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=279.99 Aligned_cols=256 Identities=18% Similarity=0.251 Sum_probs=216.3
Q ss_pred CCCcEEEEeeCCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEec--CCCCceEEEEeCC---CEEEEEeC
Q 011916 196 SNSKVTRLCDLGPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQCKRVRTFG--GHQTRAGVLAWNS---RILSSGSR 269 (475)
Q Consensus 196 ~~~~~~~~~~~~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~~~~~~~--~h~~~v~~l~~~~---~~l~sgs~ 269 (475)
...+....+. +|...|.+++|+|++ ++|++|+.||.|+|||+.+++....+. +|...|.+++|++ ++|++++.
T Consensus 61 ~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~ 139 (383)
T 3ei3_B 61 KSYKLHRTAS-PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI 139 (383)
T ss_dssp TTCEEEEEEC-CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET
T ss_pred cccceEEecc-CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC
Confidence 3444444443 789999999999999 999999999999999999888777765 6999999999954 79999999
Q ss_pred CCcEEEEECCCCCccEEEecC---ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCC
Q 011916 270 DRNILQHDLRVSSDYICKLAG---HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 270 dg~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 346 (475)
|+.|++||++. ..+..+.. |...|.+++|+|++++|++|+.|+.|++||+ .++.+..+..|...|.+++|+|++
T Consensus 140 d~~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~ 216 (383)
T 3ei3_B 140 RGATTLRDFSG--SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRC 216 (383)
T ss_dssp TTEEEEEETTS--CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSC
T ss_pred CCEEEEEECCC--CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCC
Confidence 99999999983 44444443 4478999999999999999999999999999 577888999999999999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCC----CceeeeecCCCCeeEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceEEEecCC
Q 011916 347 SSLLASGGGTADRCIRFWNTSN----GHQLNSVDTGSQVCNLAWSK-NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH 421 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~----~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h 421 (475)
..++++++ .|+.|++||+++ +.++..+.+...|.+++|+| ++++|++ ++.|+.|++||+.+++.+..+.+|
T Consensus 217 ~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 217 DWLMATSS--VDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLT--TDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp TTEEEEEE--TTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEE--EESSSEEEEEETTBTTSCSEEEEC
T ss_pred CCEEEEEe--CCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEE--EcCCCcEEEEECCCCccccccccc
Confidence 97777765 899999999998 67788888899999999999 9999998 788999999999988776666644
Q ss_pred C-----------------cceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 422 S-----------------LRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 422 ~-----------------~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
. ..+..++|+|||++ +++.|+.|++||+..+.....+.
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~ 347 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR 347 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence 3 33445666777766 77899999999999887665543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-33 Score=279.06 Aligned_cols=246 Identities=18% Similarity=0.241 Sum_probs=218.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------eeEEecCCCCceEEEEe--C----C---CEEEEEeCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK------RVRTFGGHQTRAGVLAW--N----S---RILSSGSRDR 271 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~------~~~~~~~h~~~v~~l~~--~----~---~~l~sgs~dg 271 (475)
+|.+.|++++|+| ++|++|+.||.|+|||+.+++ .+..+.+|...|.+++| + + .+|++++.||
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg 91 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 91 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCC
Confidence 7999999999998 799999999999999999887 78888899999999999 4 6 7999999999
Q ss_pred cEEEEECCCCCcc-----EEEecCc-----cCCEEEEEEc----CCCCE-EEEEeCCCcEEEEECCC------CceeE--
Q 011916 272 NILQHDLRVSSDY-----ICKLAGH-----KSEVCGLKWS----HDDRE-LASGGNDNQLLVWNQHS------QQPTL-- 328 (475)
Q Consensus 272 ~I~iwd~~~~~~~-----~~~~~~h-----~~~V~~l~~s----~~~~~-lasg~~Dg~I~iwd~~~------~~~~~-- 328 (475)
.|++||+.. ... ...+..| ...|.+++|+ |++++ |++++.||.|++||+.. ++.+.
T Consensus 92 ~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 170 (397)
T 1sq9_A 92 DLLFYRITR-EDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS 170 (397)
T ss_dssp CEEEEEEEE-CTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred CEEEEEccC-CcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeecc
Confidence 999999984 444 7778888 5999999999 99999 99999999999999998 66665
Q ss_pred ---EE-------eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-------CCCeeEEEEcCCCC
Q 011916 329 ---RL-------TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-------GSQVCNLAWSKNVN 391 (475)
Q Consensus 329 ---~~-------~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-------~~~v~~l~~s~~~~ 391 (475)
.+ ..|...|.+++|+|++ ++++++ .|+.|++||+++++.+..+.. ...+.+++|+|+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~ 246 (397)
T 1sq9_A 171 PTLELQGTVESPMTPSQFATSVDISERG--LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 246 (397)
T ss_dssp CEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTT
T ss_pred CcceeeeeeccccCCCCCceEEEECCCc--eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCC
Confidence 66 4488999999999999 555554 899999999999999988865 88999999999999
Q ss_pred eEEEEEecCC---CeEEEEECCCCceEEEecC-------------CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 392 ELVSTHGYSQ---NQIMVWKYPSMAKVSTLTG-------------HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 392 ~l~~~~g~~d---g~I~iwd~~~~~~~~~l~~-------------h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
+|++ ++.+ +.|++||+.+++.+..+.+ |...|.+++|+|++++|++++.||.|++||+..+.
T Consensus 247 ~l~~--~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 324 (397)
T 1sq9_A 247 LLAI--AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 324 (397)
T ss_dssp EEEE--EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred EEEE--EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 9998 7778 9999999999999999998 99999999999999999999999999999998876
Q ss_pred CCCCcc
Q 011916 456 KAPALV 461 (475)
Q Consensus 456 ~~~~~~ 461 (475)
....+.
T Consensus 325 ~~~~~~ 330 (397)
T 1sq9_A 325 RITTLN 330 (397)
T ss_dssp EEEEEE
T ss_pred eeEEEe
Confidence 655543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-32 Score=313.53 Aligned_cols=295 Identities=20% Similarity=0.273 Sum_probs=251.8
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~~~ 242 (475)
+...|.+++|+++ .+++++.|+.|++||+.+++....+. +|...|.+++|+| ++.++++|+.||.|++||+.+++
T Consensus 656 h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~ 734 (1249)
T 3sfz_A 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE 734 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS
T ss_pred CCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc
Confidence 3456899999987 36666679999999999999888876 7899999999999 55689999999999999999999
Q ss_pred eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc------------------------------------
Q 011916 243 RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY------------------------------------ 284 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~------------------------------------ 284 (475)
.+..+.+|...|.+++|+ +.+|++|+.||.|++||++.....
T Consensus 735 ~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~ 814 (1249)
T 3sfz_A 735 CRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKII 814 (1249)
T ss_dssp EEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEE
T ss_pred hhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEE
Confidence 999999999999999994 689999999999999998633110
Q ss_pred -----------------E-EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCC
Q 011916 285 -----------------I-CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 285 -----------------~-~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~ 346 (475)
. ....+|...|.+++|+|++.++++++.|+.|++||+.++..+..+.+|...|.+++|+|++
T Consensus 815 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 815 VAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp EEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCC
Confidence 0 1122678899999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCCCce-----------------------------e---------eeecCCCCeeEEEEcC
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQ-----------------------------L---------NSVDTGSQVCNLAWSK 388 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~-----------------------------~---------~~~~~~~~v~~l~~s~ 388 (475)
..+++++ .|+.|++||+.++.. + ........+.+++|+|
T Consensus 895 ~~l~s~s---~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 971 (1249)
T 3sfz_A 895 SSFLTAS---DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971 (1249)
T ss_dssp SEEEEEE---TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred CEEEEEe---CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Confidence 9666543 799999999653210 0 0012345799999999
Q ss_pred CCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcccCCccc
Q 011916 389 NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVKDTSLW 467 (475)
Q Consensus 389 ~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~ 467 (475)
+++++++ |+.+|.|++||+.+++.+..+.+|...|.+++|+|+|++|++++.||.|++|++..+.......+...+.
T Consensus 972 ~g~~l~~--g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~ 1048 (1249)
T 3sfz_A 972 HLEYVAF--GDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK 1048 (1249)
T ss_dssp TSSEEEE--EETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE
T ss_pred CCCEEEE--EcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEE
Confidence 9999999 8899999999999999999999999999999999999999999999999999999877655444444443
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=263.22 Aligned_cols=238 Identities=19% Similarity=0.362 Sum_probs=198.5
Q ss_pred CCceeEEecCCC--CEEEEEcCCeEEEEECCCC--cEEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCC
Q 011916 168 DFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNS--KVTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 168 d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~--~~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~~ 241 (475)
.-.|.+++|+++ .+++++.|+.|+||++.+. +....+. +|.+.|.+++|++ ++++|++|+.||+|+|||+.++
T Consensus 9 ~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~ 87 (297)
T 2pm7_B 9 NEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG 87 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS
T ss_pred cCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC
Confidence 446888999986 4666777999999999754 4444444 8999999999986 4899999999999999999887
Q ss_pred e--eeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCC-----------
Q 011916 242 K--RVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHD----------- 303 (475)
Q Consensus 242 ~--~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~----------- 303 (475)
+ .+..+.+|...|.+++|+ +.+|++|+.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 88 ~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~ 167 (297)
T 2pm7_B 88 RWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 167 (297)
T ss_dssp CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----------
T ss_pred ceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCC
Confidence 4 566788999999999995 56999999999999999985432 24667899999999999997
Q ss_pred --CCEEEEEeCCCcEEEEECCCCc----eeEEEeccccceeEEEECCCC--CcEEEEecCCCCCeEEEEECCCCc---ee
Q 011916 304 --DRELASGGNDNQLLVWNQHSQQ----PTLRLTEHTAAVKAIAWSPHQ--SSLLASGGGTADRCIRFWNTSNGH---QL 372 (475)
Q Consensus 304 --~~~lasg~~Dg~I~iwd~~~~~----~~~~~~~h~~~v~~l~~sp~~--~~ll~sg~Gs~d~~I~iwd~~~~~---~~ 372 (475)
+++|++|+.|+.|++||+++++ ....+.+|...|.+++|+|++ ..++++++ .|++|++||+.++. ..
T Consensus 168 ~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s--~D~~v~iWd~~~~~~~~~~ 245 (297)
T 2pm7_B 168 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS--QDRTCIIWTQDNEQGPWKK 245 (297)
T ss_dssp --CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEE
T ss_pred CCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE--CCCcEEEEEeCCCCCccce
Confidence 5799999999999999998765 556788999999999999996 45677765 89999999998753 11
Q ss_pred eee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 373 NSV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 373 ~~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
..+ .+...|.+++|+|+++.|++ ++.|+.|++|+..
T Consensus 246 ~~~~~~~~~~~v~~~~~s~~g~~las--~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 246 TLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKEN 284 (297)
T ss_dssp EESSSSCCSSCEEEEEECSSSCCEEE--EETTSCEEEEEEC
T ss_pred eeeecccCCCcEEEEEECCCCCEEEE--EcCCCcEEEEEEC
Confidence 222 35678999999999999998 7789999999976
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-34 Score=284.15 Aligned_cols=240 Identities=16% Similarity=0.206 Sum_probs=202.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--eeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC-
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--KRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS- 282 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~- 282 (475)
+.+.|++++|+|+|++||+|+.||.|+|||+.++ +.+..+.+|...|.+++|+ +++|++++.|+.|++||+....
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~ 89 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT 89 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc
Confidence 4578999999999999999999999999999988 7888899999999999995 6899999999999999998433
Q ss_pred -ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc---eeEEEec-cccceeEEEECCCCCcEEEEecCCC
Q 011916 283 -DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ---PTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 283 -~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~---~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
.....+..|...|.+++|+|++++|++|+.|+.|++||++.++ ....+.. |...|.+++|+|++..|+ +++ .
T Consensus 90 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~~--~ 166 (377)
T 3dwl_C 90 WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA-AGC--A 166 (377)
T ss_dssp CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE-EEE--S
T ss_pred eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE-EEe--C
Confidence 2567788899999999999999999999999999999999877 4677777 999999999999998554 444 7
Q ss_pred CCeEEEEECC------------------CCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce----E
Q 011916 358 DRCIRFWNTS------------------NGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK----V 415 (475)
Q Consensus 358 d~~I~iwd~~------------------~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~----~ 415 (475)
|+.|++||+. .++++..+.+...|.+++|+|++++|++ ++.|+.|++||+.+++. +
T Consensus 167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~--~~~d~~i~iwd~~~~~~~~~~~ 244 (377)
T 3dwl_C 167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAY--AGHDSSVTIAYPSAPEQPPRAL 244 (377)
T ss_dssp SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEE--EETTTEEC-CEECSTTSCEEEC
T ss_pred CCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEE--EeCCCcEEEEECCCCCCcceee
Confidence 9999999985 3445555567788999999999999999 88999999999999887 7
Q ss_pred EEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 416 STLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
..+.+|...|.+++|+|++++|++++.|+.+ +|+...
T Consensus 245 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 245 ITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp CCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred EeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 8888999999999999999999988766655 776653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-32 Score=276.81 Aligned_cols=278 Identities=14% Similarity=0.130 Sum_probs=228.9
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCc---EEEEeeC---------------------------------------
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSK---VTRLCDL--------------------------------------- 206 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~---~~~~~~~--------------------------------------- 206 (475)
.+.+++|+++ .+++++.++.|++||+.+++ ....+..
T Consensus 6 p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred cEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 4678889986 68888889999999999998 5444431
Q ss_pred --------------CCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECC--CCeeeEEec--CCCCceEEEEeC--CCEEE
Q 011916 207 --------------GPGDSVCSVQWTREGSYI-SVGTNLGQVQVWDGT--QCKRVRTFG--GHQTRAGVLAWN--SRILS 265 (475)
Q Consensus 207 --------------~~~~~V~~v~~spdg~~l-a~g~~dg~v~iwd~~--~~~~~~~~~--~h~~~v~~l~~~--~~~l~ 265 (475)
+|.+.|.+++|+|+|++| ++|+.||.|+|||+. +++.+..+. .|...|.+++|+ +.+|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEE
Confidence 122369999999999996 889999999999999 888888876 577899999995 68999
Q ss_pred EEeCCCcEEEEECCCCCc---cEEEecCccCCEEEEEEcCC---CCEEEEEeCCCcEEEEECCCCceeEE-Eecccccee
Q 011916 266 SGSRDRNILQHDLRVSSD---YICKLAGHKSEVCGLKWSHD---DRELASGGNDNQLLVWNQHSQQPTLR-LTEHTAAVK 338 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~~---~~~lasg~~Dg~I~iwd~~~~~~~~~-~~~h~~~v~ 338 (475)
+|+.+|.|.+|++..... ....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++.+.. +.+|...|.
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~ 245 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVS 245 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEE
T ss_pred EEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceE
Confidence 999999999999974332 22366789999999999999 99999999999999999999988877 558999999
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--------------------------CCCeeEEEEcCCCCe
Q 011916 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--------------------------GSQVCNLAWSKNVNE 392 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~--------------------------~~~v~~l~~s~~~~~ 392 (475)
+++|+ ++.+|+ +++ .|+.|++||+.+++++..+.. ...+..++|+|++++
T Consensus 246 ~~~~s-d~~~l~-s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~ 321 (450)
T 2vdu_B 246 SICCG-KDYLLL-SAG--GDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPF 321 (450)
T ss_dssp EEEEC-STTEEE-EEE--SSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSE
T ss_pred EEEEC-CCCEEE-EEe--CCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCE
Confidence 99999 888555 544 899999999999998877742 246899999999999
Q ss_pred EEEEEec-CCCeEEEEEC--CCC---ceEEEecCCCcceEEEEECCCCCEEEEEeC------CCCEEEEecCCC
Q 011916 393 LVSTHGY-SQNQIMVWKY--PSM---AKVSTLTGHSLRVLYLATSPDGQTIVTGAG------DETLRFWNVFPS 454 (475)
Q Consensus 393 l~~~~g~-~dg~I~iwd~--~~~---~~~~~l~~h~~~V~~l~~spdg~~l~s~s~------Dg~I~iW~~~~~ 454 (475)
|++ +. .++.|++|++ .+. +.+..+..| ..|.+++|+|++.++++++. +..|.+|.+...
T Consensus 322 l~~--~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 322 VAF--FVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EEE--EETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred EEE--EECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 998 44 7999999999 555 677788888 88999999996543333332 556899988654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=269.96 Aligned_cols=241 Identities=15% Similarity=0.242 Sum_probs=212.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
.|.+.|.+++|+|++++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+ +++|++++.||.|++||+....
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence 478899999999999999999999999999999987 888999999999999994 7899999999999999997432
Q ss_pred -ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEE-eccccceeEEEECCCCCcEEEEecCCC
Q 011916 283 -DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP---TLRL-TEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 283 -~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~---~~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
.....+..|...|.+++|+|++++|++++.|+.|++||++.+.. ...+ ..|...|.+++|+|++..+++ ++ .
T Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~--~ 162 (372)
T 1k8k_C 86 WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA-GS--C 162 (372)
T ss_dssp EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE-EE--T
T ss_pred eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEE-Ec--C
Confidence 12334577999999999999999999999999999999998763 2333 568899999999999985555 43 7
Q ss_pred CCeEEEEECC------------------CCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 358 DRCIRFWNTS------------------NGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 358 d~~I~iwd~~------------------~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
|+.|++||+. +++++..+ .+...+.+++|+|++++|++ ++.|+.|++||+.+++.+..+
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~~~~ 240 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW--VSHDSTVCLADADKKMAVATL 240 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE--EETTTEEEEEEGGGTTEEEEE
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEE--EeCCCEEEEEECCCCceeEEE
Confidence 9999999953 67777777 46778999999999999998 789999999999999999999
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 419 TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 419 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
..|...|.+++|+|++.+|+++ .|+.|++|++..
T Consensus 241 ~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 241 ASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp ECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred ccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999999999999999988877 999999999987
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=285.21 Aligned_cols=244 Identities=14% Similarity=0.234 Sum_probs=203.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----------eeEEecCCC------------CceEEEEeC--C
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-----------RVRTFGGHQ------------TRAGVLAWN--S 261 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-----------~~~~~~~h~------------~~v~~l~~~--~ 261 (475)
.+.+.|++++|+|+|++||+|+.||.|+|||+.+++ ....+.+|. ..|.+++|+ +
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 457899999999999999999999999999998876 577888998 889999995 3
Q ss_pred --CEEEEEeCCCcEEEEECCCCCcc--------------------------------------E-EEecCccCCEEEEEE
Q 011916 262 --RILSSGSRDRNILQHDLRVSSDY--------------------------------------I-CKLAGHKSEVCGLKW 300 (475)
Q Consensus 262 --~~l~sgs~dg~I~iwd~~~~~~~--------------------------------------~-~~~~~h~~~V~~l~~ 300 (475)
.+|++++.|+.|++||+...... . ....+|...|.+++|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 58999999999999998732110 1 113679999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCC-ceeEE-------EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQ-QPTLR-------LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ- 371 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~-------~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~- 371 (475)
+|++++|++| .|+.|++||++.. +.+.. +..|...|.+++|+|++..++++++ .|+.|++||+++++.
T Consensus 186 ~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~ 262 (447)
T 3dw8_B 186 NSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMRASALC 262 (447)
T ss_dssp CTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTSCEEEEETTTCSSS
T ss_pred cCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCCeEEEEECcCCccc
Confidence 9999999998 7999999999943 33332 4579999999999999944667665 899999999999886
Q ss_pred ---eeeecCCC-------------CeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEEEecCCCcc----------
Q 011916 372 ---LNSVDTGS-------------QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-MAKVSTLTGHSLR---------- 424 (475)
Q Consensus 372 ---~~~~~~~~-------------~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~~l~~h~~~---------- 424 (475)
+..+.... .|.+++|+|++++|++ ++. +.|++||+.+ ++.+..+.+|...
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~ 339 (447)
T 3dw8_B 263 DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT--RDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN 339 (447)
T ss_dssp CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE--EES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHT
T ss_pred cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE--eeC-CeEEEEeCCCCccccceeeccccccccccccccc
Confidence 56665432 8999999999999998 666 9999999997 8888888888642
Q ss_pred -----eEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 425 -----VLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 425 -----V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+..++|+|++++|++|+.||.|++||+..+..
T Consensus 340 ~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 340 DCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp SGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred cccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 23499999999999999999999999987754
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=269.10 Aligned_cols=255 Identities=15% Similarity=0.281 Sum_probs=213.9
Q ss_pred CcEEEEeeCCCCCcEEEEEEcCCCCEE-EEEeC---CCeEEEEECCCCeeeEEec-CCCCceEEEEeC-----CCEEEEE
Q 011916 198 SKVTRLCDLGPGDSVCSVQWTREGSYI-SVGTN---LGQVQVWDGTQCKRVRTFG-GHQTRAGVLAWN-----SRILSSG 267 (475)
Q Consensus 198 ~~~~~~~~~~~~~~V~~v~~spdg~~l-a~g~~---dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~-----~~~l~sg 267 (475)
.+.......+|...|.+++|+|++..+ ++|+. ||.|+|||+.+++...... +|...|.+++|+ +.+|++|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 344444434799999999999999655 55655 8999999999887765443 799999999994 4899999
Q ss_pred eCCCcEEEEECCCCCccEEEecCccCCEEEEEE------cCCCCEEEEEeCCCcEEEEECCCCc-eeEEEecccc----c
Q 011916 268 SRDRNILQHDLRVSSDYICKLAGHKSEVCGLKW------SHDDRELASGGNDNQLLVWNQHSQQ-PTLRLTEHTA----A 336 (475)
Q Consensus 268 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~------s~~~~~lasg~~Dg~I~iwd~~~~~-~~~~~~~h~~----~ 336 (475)
+.||.|++||+......+..+.+|...|.++.| ++++++|++++.|+.|++||+++++ ++..+..|.+ .
T Consensus 87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence 999999999998555478889999999999955 6899999999999999999999887 6777776555 7
Q ss_pred eeEEE----ECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcC---CCCeEEEEEecCCCeEEEEEC
Q 011916 337 VKAIA----WSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSK---NVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 337 v~~l~----~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~~g~~dg~I~iwd~ 409 (475)
+.+++ |+|++..+++ ++ .|+.|++||+++++......+...+.+++|+| ++..+++ ++.+|.|++||+
T Consensus 167 v~~~~~~~~~~~~~~~l~~-~~--~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~--~~~dg~i~i~d~ 241 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCA-GY--DNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVA--TSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEEECCCC-CCCEEEE-EE--TTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEE--EESTTEEEEEEE
T ss_pred eEEEEEEeccCCCCCEEEE-Ec--cCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEE--ECCCCeEEEEeC
Confidence 88998 7888885555 43 79999999999999988888899999999999 8999998 789999999999
Q ss_pred CCCceEEEe-----cCCCcceEEEEECCCCC-EEEEEeCCCCEEEEecCCCCCC
Q 011916 410 PSMAKVSTL-----TGHSLRVLYLATSPDGQ-TIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 410 ~~~~~~~~l-----~~h~~~V~~l~~spdg~-~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
.+++.+..+ .+|...|.+++|+|++. +|++++.||.|++||+......
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 295 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQR 295 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCccc
Confidence 876654444 38999999999999998 8999999999999999876544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=296.12 Aligned_cols=251 Identities=19% Similarity=0.329 Sum_probs=227.1
Q ss_pred EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECC
Q 011916 202 RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 202 ~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~ 279 (475)
+.+. +|.+.|.+++|+|+|++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+ +.+|++|+.||.|++||+.
T Consensus 7 ~~~~-~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 7 KTFS-NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp EEEE-EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred eeee-cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 3443 788999999999999999999999999999999999999999999999999994 6899999999999999998
Q ss_pred CCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEEEECC-CCCcEEEEecCCC
Q 011916 280 VSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSP-HQSSLLASGGGTA 357 (475)
Q Consensus 280 ~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp-~~~~ll~sg~Gs~ 357 (475)
.+..+..+.+|...|.+++|+|++++|++++.||.|++||+.++ .....+..|...|.+++|+| ++. ++++++ .
T Consensus 86 -~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~--~ 161 (814)
T 3mkq_A 86 -TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPS-TFASGC--L 161 (814)
T ss_dssp -TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEE-EEEEEE--T
T ss_pred -CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCC-EEEEEe--C
Confidence 56778888999999999999999999999999999999999987 66778888999999999999 555 555554 8
Q ss_pred CCeEEEEECCCCceeeeecC--CCCeeEEEEcC--CCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 358 DRCIRFWNTSNGHQLNSVDT--GSQVCNLAWSK--NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 358 d~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~--~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
|+.|++||+.++.....+.. ...+..++|+| ++..+++ ++.+|.|++||+.+++.+..+.+|...|.+++|+|+
T Consensus 162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~--~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~ 239 (814)
T 3mkq_A 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT--ASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239 (814)
T ss_dssp TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEE--ECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSS
T ss_pred CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCC
Confidence 99999999998887776643 37899999999 8999998 889999999999999999999999999999999999
Q ss_pred CCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 434 GQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+.+|++++.||.|++||+..+.....
T Consensus 240 ~~~l~~~~~dg~v~vwd~~~~~~~~~ 265 (814)
T 3mkq_A 240 LPIIISGSEDGTLKIWNSSTYKVEKT 265 (814)
T ss_dssp SSEEEEEETTSCEEEEETTTCSEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 99999999999999999988765444
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=262.54 Aligned_cols=282 Identities=14% Similarity=0.176 Sum_probs=225.8
Q ss_pred CCCceeEEecCCC----C-EEEEEcCCeEEEEECCC-CcEE-EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 167 DDFYLNLVDWSSQ----N-VLAVGLGTCVYLWTASN-SKVT-RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 167 ~d~~v~~l~ws~~----~-~la~~~~~~V~lw~~~~-~~~~-~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+.-.|++++|+++ + +++++.|+.|+||++.+ +... ..+. +|...|.+++|+|++++|++|+.||.|++||+.
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~ 116 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQ-MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEec-cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcC
Confidence 3556999999996 3 55556699999999997 5544 3333 789999999999999999999999999999999
Q ss_pred CCeeeEEecCCCCceEEEEe--C--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCc
Q 011916 240 QCKRVRTFGGHQTRAGVLAW--N--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQ 315 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~--~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~ 315 (475)
+++.+. +..|...|.+++| + +.+|++++.||.|++||++ ....+..+..+. .+.++.+.+ ..+++++.++.
T Consensus 117 ~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~ 191 (368)
T 3mmy_A 117 SNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR-SSNPMMVLQLPE-RCYCADVIY--PMAVVATAERG 191 (368)
T ss_dssp TTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS-CSSCSEEEECSS-CEEEEEEET--TEEEEEEGGGC
T ss_pred CCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC-CCcEEEEEecCC-CceEEEecC--CeeEEEeCCCc
Confidence 988776 5579999999999 4 4689999999999999998 456666666654 566777654 48889999999
Q ss_pred EEEEECCCCceeEEEe--ccccceeEEEECCCCCc---EEEEecCCCCCeEEEEECCCC---ceeeeecCCC--------
Q 011916 316 LLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSS---LLASGGGTADRCIRFWNTSNG---HQLNSVDTGS-------- 379 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~---ll~sg~Gs~d~~I~iwd~~~~---~~~~~~~~~~-------- 379 (475)
+.+|+++......... .+...+..+++.++... .+++++ .|+.|++||+... ..+..+....
T Consensus 192 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 192 LIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp EEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred EEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCccccceeeeeeecccccccc
Confidence 9999998765443322 23344555555544432 244444 8999999999887 3444443322
Q ss_pred -----CeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 380 -----QVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 380 -----~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.|.+++|+|++++|++ ++.||.|++||+.+++.+..+.+|...|.+++|+|+|++|++++.|+..+.|++...
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLAT--VGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred cccccceEEEEEecCCCEEEE--EccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 6999999999999998 889999999999999999999999999999999999999999999998888887765
Q ss_pred CCCC
Q 011916 455 LKAP 458 (475)
Q Consensus 455 ~~~~ 458 (475)
+...
T Consensus 348 ~~~~ 351 (368)
T 3mmy_A 348 QKKN 351 (368)
T ss_dssp TSCC
T ss_pred Cccc
Confidence 5443
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=262.50 Aligned_cols=246 Identities=15% Similarity=0.283 Sum_probs=218.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+ +++|++++.||.|++||+. .+..
T Consensus 30 ~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~ 108 (369)
T 3zwl_B 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS-NGQC 108 (369)
T ss_dssp CCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-TCCE
T ss_pred EeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCcE
Confidence 899999999999999999999999999999999999999999999999999995 6899999999999999998 4555
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCc-----------eeEEEecccc--ceeEEEECCCC
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGND-----NQLLVWNQHSQQ-----------PTLRLTEHTA--AVKAIAWSPHQ 346 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~~~~~-----------~~~~~~~h~~--~v~~l~~sp~~ 346 (475)
+..+. |...|.+++|+|++++|++++.+ +.|++||+.... .+..+..|.. .+.+++|+|++
T Consensus 109 ~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (369)
T 3zwl_B 109 VATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG 187 (369)
T ss_dssp EEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG
T ss_pred EEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCC
Confidence 66665 88899999999999999999999 999999987653 3445556666 89999999999
Q ss_pred CcEEEEecCCCCCeEEEEECCC-Cceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc
Q 011916 347 SSLLASGGGTADRCIRFWNTSN-GHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~ 424 (475)
..+++ ++ .|+.|++||+.+ ++.+..+. +...|.+++|+|++++|++ ++.|+.|++||+.+++.+..+. +...
T Consensus 188 ~~l~~-~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~d~~i~v~d~~~~~~~~~~~-~~~~ 261 (369)
T 3zwl_B 188 KYIIA-GH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT--SSRDTNSFLVDVSTLQVLKKYE-TDCP 261 (369)
T ss_dssp CEEEE-EE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEE-CSSC
T ss_pred CEEEE-Ec--CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE--ecCCceEEEEECCCCceeeeec-CCCC
Confidence 96655 33 799999999998 67777665 6788999999999999998 7899999999999999988887 7788
Q ss_pred eEEEEECCCCCEEEEEeCCC--------------CEEEEecCCCCCCCCc
Q 011916 425 VLYLATSPDGQTIVTGAGDE--------------TLRFWNVFPSLKAPAL 460 (475)
Q Consensus 425 V~~l~~spdg~~l~s~s~Dg--------------~I~iW~~~~~~~~~~~ 460 (475)
+..++|+|+++++++++.++ .|++||+..+.....+
T Consensus 262 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 311 (369)
T 3zwl_B 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRV 311 (369)
T ss_dssp EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEE
T ss_pred ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhe
Confidence 99999999999999999998 8999999887765544
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-32 Score=258.97 Aligned_cols=247 Identities=21% Similarity=0.308 Sum_probs=215.6
Q ss_pred cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEE
Q 011916 199 KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQH 276 (475)
Q Consensus 199 ~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iw 276 (475)
+....+. +|.+.|.+++| +++++|++|+.||.|++||+.+++....+..|...|.+++|+ +.+|++|+.||.|++|
T Consensus 9 ~~~~~l~-~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 9 QLSATLK-GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV 86 (313)
T ss_dssp EEEEEEC-CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred HHHHHhh-CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence 3444444 89999999999 999999999999999999999999999999999999999994 6899999999999999
Q ss_pred ECCCCC--ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECC-CCCcEEEEe
Q 011916 277 DLRVSS--DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP-HQSSLLASG 353 (475)
Q Consensus 277 d~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~ll~sg 353 (475)
++.... .....+.+|...|.++.| ++++|++++.|+.|++|| .++.+..+..|...+.+++|.| ++. +++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~ 161 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSEN-KFLTA 161 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTT-EEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCC-EEEEE
Confidence 997443 456778899999999999 677999999999999999 6777888889999999999998 666 55555
Q ss_pred cCCCCCeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEEC
Q 011916 354 GGTADRCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATS 431 (475)
Q Consensus 354 ~Gs~d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 431 (475)
+ .|+.|++||. ++.+..+. +...+.+++|+|++. +++ +..+|.|++||+.+++.+..+.+|...|.+++|+
T Consensus 162 ~--~d~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 234 (313)
T 3odt_A 162 S--ADKTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FIS--CSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLL 234 (313)
T ss_dssp E--TTSCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred E--CCCCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEE--ccCCCeEEEEECCchhhhhhhhcCCceEEEEEEe
Confidence 4 8999999994 44555443 778899999999998 666 7899999999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 432 PDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 432 pdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
|++ .|++++.||.|++||+..+.....+
T Consensus 235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~ 262 (313)
T 3odt_A 235 PNG-DIVSCGEDRTVRIWSKENGSLKQVI 262 (313)
T ss_dssp TTS-CEEEEETTSEEEEECTTTCCEEEEE
T ss_pred cCC-CEEEEecCCEEEEEECCCCceeEEE
Confidence 999 5889999999999999988765554
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-33 Score=281.51 Aligned_cols=262 Identities=12% Similarity=0.199 Sum_probs=213.7
Q ss_pred EEECCCCcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCC---Ce---eeEEecCCCCceEEEEeC--CC
Q 011916 192 LWTASNSKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQ---CK---RVRTFGGHQTRAGVLAWN--SR 262 (475)
Q Consensus 192 lw~~~~~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~---~~---~~~~~~~h~~~v~~l~~~--~~ 262 (475)
.|+ .+++.+..+..+|.+.|++++|+| ++++||+|+.||+|+|||+.+ +. ....+ .|...|.+++|+ ++
T Consensus 47 ~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~ 124 (437)
T 3gre_A 47 MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD 124 (437)
T ss_dssp GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS
T ss_pred ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC
Confidence 377 445666666447899999999999 999999999999999999876 33 23333 599999999995 58
Q ss_pred EEEEEeCCCcEEEEECC--CCCccEEEec----------C--ccCCEEEEE--EcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 263 ILSSGSRDRNILQHDLR--VSSDYICKLA----------G--HKSEVCGLK--WSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 263 ~l~sgs~dg~I~iwd~~--~~~~~~~~~~----------~--h~~~V~~l~--~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
+|++|+.||.|++||+. ..+....... . +...+.++. +++++.+|++|+.|+.|++||+++++.
T Consensus 125 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 125 AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 99999999999999995 1222222222 1 455677776 567899999999999999999999999
Q ss_pred eEEEec--cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--cCCCCeeEEEEcC----CCCeEEEEEe
Q 011916 327 TLRLTE--HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSK----NVNELVSTHG 398 (475)
Q Consensus 327 ~~~~~~--h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~----~~~~l~~~~g 398 (475)
+..+.. |...|.+++|+|++..|++ |+ .|+.|++||+++++++..+ .+...|.+++|+| ++.+|++ |
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s-~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s--~ 279 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECCVLIL-GT--TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVG--G 279 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSCEEEE-EE--TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEE--E
T ss_pred eEEEccCCCCCceEEEEECCCCCEEEE-Ec--CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEE--E
Confidence 999988 8999999999999885554 43 8999999999999998877 4566899996665 5667777 8
Q ss_pred cCCCeEEEEECCCCceEEEecC--------------------------CCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 399 YSQNQIMVWKYPSMAKVSTLTG--------------------------HSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~~~~~l~~--------------------------h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+.||.|++||+.+++.+..+.+ |...|++++|+ ++.+|++|+.|+.|++||+.
T Consensus 280 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 280 SSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLN 358 (437)
T ss_dssp STTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred cCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence 8999999999999998877764 45568889999 77899999999999999999
Q ss_pred CCCCCCCcc
Q 011916 453 PSLKAPALV 461 (475)
Q Consensus 453 ~~~~~~~~~ 461 (475)
.+.....+.
T Consensus 359 ~~~~~~~~~ 367 (437)
T 3gre_A 359 ELSSSKAVI 367 (437)
T ss_dssp CGGGCEEEE
T ss_pred CcccceEEe
Confidence 887665543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-33 Score=289.54 Aligned_cols=226 Identities=11% Similarity=0.113 Sum_probs=187.1
Q ss_pred EEEEeCCCeEEEEECCCCeee----EEecCCCCceEEEEeCC--------CEEEEEeCCCcEEEEECCCCCc--------
Q 011916 224 ISVGTNLGQVQVWDGTQCKRV----RTFGGHQTRAGVLAWNS--------RILSSGSRDRNILQHDLRVSSD-------- 283 (475)
Q Consensus 224 la~g~~dg~v~iwd~~~~~~~----~~~~~h~~~v~~l~~~~--------~~l~sgs~dg~I~iwd~~~~~~-------- 283 (475)
|++++.||+|+|||+.+++.. ..+.+|.+.|.+++|++ .+|++++.||+|++||+.....
T Consensus 176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~ 255 (524)
T 2j04_B 176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMC 255 (524)
T ss_dssp ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECC
T ss_pred hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceee
Confidence 344557889999999876542 34667889999999964 5999999999999999974321
Q ss_pred --cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEE--EECCCCCcEEEEecCCCC
Q 011916 284 --YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAI--AWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 284 --~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l--~~sp~~~~ll~sg~Gs~d 358 (475)
....+.+|...|.+++|++++ .|++|+.||+|++||++++ .+...+..|...|.+| +|+|++..++++++ .|
T Consensus 256 ~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S--~D 332 (524)
T 2j04_B 256 EKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA--VD 332 (524)
T ss_dssp CSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE--TT
T ss_pred cCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec--cC
Confidence 234678899999999999864 8999999999999999976 4556788999999999 57888745777766 89
Q ss_pred CeEEEEECCCCceeeeec-CC--CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC
Q 011916 359 RCIRFWNTSNGHQLNSVD-TG--SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~-~~--~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
++|++||+++++++..+. +. ..|.+++|+|+++.+++ ++.|+.|++||++++..+..+.+|.+.|++|+|+|+|+
T Consensus 333 ~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s--~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~ 410 (524)
T 2j04_B 333 GYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIY--SDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHP 410 (524)
T ss_dssp SEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEE--ECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCC
T ss_pred CeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEE--eCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCC
Confidence 999999999887765553 22 35889999999999888 77899999999999998888999999999999999999
Q ss_pred EEEEEeCCCCEEEEecCCC
Q 011916 436 TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~ 454 (475)
+|++|+.||+|++||+...
T Consensus 411 ~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 411 MVLAGSADGSLIITNAARR 429 (524)
T ss_dssp BCEEEETTTEEECCBSCSS
T ss_pred eEEEEECCCEEEEEechHh
Confidence 9999999999999998654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=269.77 Aligned_cols=247 Identities=16% Similarity=0.274 Sum_probs=213.4
Q ss_pred EeeCCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEECCCCeeeEEecC-----CCCceEEEEeC------CCEEEEE
Q 011916 203 LCDLGPGDSVCSVQWTRE----GSYISVGTNLGQVQVWDGTQCKRVRTFGG-----HQTRAGVLAWN------SRILSSG 267 (475)
Q Consensus 203 ~~~~~~~~~V~~v~~spd----g~~la~g~~dg~v~iwd~~~~~~~~~~~~-----h~~~v~~l~~~------~~~l~sg 267 (475)
.+..+|.+.|++++|+|+ ...+++++.++.|+|||+.+++.+..+.. |...|.+++|+ +.+|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 333489999999999984 45677777778999999998877766653 56789999994 3489999
Q ss_pred eCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE---eccccceeEEEEC
Q 011916 268 SRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRL---TEHTAAVKAIAWS 343 (475)
Q Consensus 268 s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~s 343 (475)
+.||.|++||+. ....+..+.+|...|.+++|+| ++++|++|+.||.|++||+++++.+..+ ..|...|.+++|+
T Consensus 92 ~~dg~i~v~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 170 (366)
T 3k26_A 92 GSRGIIRIINPI-TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170 (366)
T ss_dssp ETTCEEEEECTT-TCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred cCCCEEEEEEch-hceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence 999999999998 5677888889999999999999 9999999999999999999999988888 6799999999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----------------------------CCCCeeEEEEcCCCCeEE
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-----------------------------TGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-----------------------------~~~~v~~l~~s~~~~~l~ 394 (475)
|++..+++.+ .|+.|++||+++++.+..+. +...|.+++|+ +++++
T Consensus 171 ~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 245 (366)
T 3k26_A 171 LLGEKIMSCG---MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLIL 245 (366)
T ss_dssp TTSSEEEEEE---TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEE
T ss_pred CCCCEEEEec---CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEE
Confidence 9998665543 79999999999876554432 77889999999 67887
Q ss_pred EEEecCCCeEEEEECCCCce--------------EEEecCCCcceEEEEECCC--CCEEEEEeCCCCEEEEecCCCCCC
Q 011916 395 STHGYSQNQIMVWKYPSMAK--------------VSTLTGHSLRVLYLATSPD--GQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~--------------~~~l~~h~~~V~~l~~spd--g~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+ ++.|+.|++||+.++.. +..+.+|...|.+++|+|+ +++|++++.||.|++||+..+...
T Consensus 246 ~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 246 S--KSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp E--ECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred E--EecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 7 88899999999987644 7888899999999999999 999999999999999999987644
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=298.53 Aligned_cols=198 Identities=13% Similarity=0.145 Sum_probs=166.7
Q ss_pred CCceeEEecCCC-CEE-EEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ-NVL-AVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~-~~l-a~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.-.|.+++|+|+ .++ +++.|+.|+||+..+.+..... .|...|.+++|+| |++|++++.|++|+|||+.+++.+.
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~--~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~ 93 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL--EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLT 93 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC--SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEE
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc--CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEE
Confidence 345899999997 444 4556999999999887765443 6788999999999 8899999999999999999999988
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccE-----------EEecCccCCEEEEEEcCC-CCEEEEEe
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYI-----------CKLAGHKSEVCGLKWSHD-DRELASGG 311 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~-----------~~~~~h~~~V~~l~~s~~-~~~lasg~ 311 (475)
.+. |...|.+++|+ +++|++|+.||.|++||++.. ... ..+.+|.+.|.+++|+|+ +..|++|+
T Consensus 94 ~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~-~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 94 TVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRD-QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp EEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTT-EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred EEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCC-ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 886 67899999995 689999999999999999843 322 123678999999999995 57999999
Q ss_pred CCCcEEEEECCCCceeEEEecc------------------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee
Q 011916 312 NDNQLLVWNQHSQQPTLRLTEH------------------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN 373 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~~~~~~~h------------------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~ 373 (475)
.|+.| +||+++++.+..+..| ...|.+++|+|++.+| ++++ .|+.|++||+++++++.
T Consensus 172 ~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~l-asgs--~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 172 EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHI-ITIH--EDNSLVFWDANSGHMIM 247 (902)
T ss_dssp SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEE-EEEE--TTCCEEEEETTTCCEEE
T ss_pred CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEE-EEEE--CCCeEEEEECCCCcEEE
Confidence 99999 9999999988888765 4779999999999855 4544 89999999999998765
Q ss_pred e
Q 011916 374 S 374 (475)
Q Consensus 374 ~ 374 (475)
.
T Consensus 248 ~ 248 (902)
T 2oaj_A 248 A 248 (902)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=266.84 Aligned_cols=252 Identities=14% Similarity=0.158 Sum_probs=215.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeEEecCCCCceEEEEe--CCC-EEEEEeCCCcEEEEEC-C
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK---RVRTFGGHQTRAGVLAW--NSR-ILSSGSRDRNILQHDL-R 279 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~---~~~~~~~h~~~v~~l~~--~~~-~l~sgs~dg~I~iwd~-~ 279 (475)
+|.+.|.+++|+|++++|++|+.||.|+||++.+++ ....+.+|...|.+++| ++. +|++|+.||.|++||+ .
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEecc
Confidence 788999999999999999999999999999998776 34556689999999999 478 9999999999999999 6
Q ss_pred CCCccEEEecC--ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CceeEEEeccccceeEEEECCCCCc
Q 011916 280 VSSDYICKLAG--HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS---------QQPTLRLTEHTAAVKAIAWSPHQSS 348 (475)
Q Consensus 280 ~~~~~~~~~~~--h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~---------~~~~~~~~~h~~~v~~l~~sp~~~~ 348 (475)
. . ....+.+ |...|.+++|+| +++|++++.|+.|++||+++ ++++..+. |...|.+++|+|++
T Consensus 89 ~-~-~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-- 162 (342)
T 1yfq_A 89 S-P-SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-- 162 (342)
T ss_dssp S-S-SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--
T ss_pred C-C-ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--
Confidence 3 3 3477788 999999999999 99999999999999999987 66666655 88999999999987
Q ss_pred EEEEecCCCCCeEEEEECCC-Ccee---eeecCCCCeeEEEEcC-CCCeEEEEEecCCCeEEEEECCCC------ceEEE
Q 011916 349 LLASGGGTADRCIRFWNTSN-GHQL---NSVDTGSQVCNLAWSK-NVNELVSTHGYSQNQIMVWKYPSM------AKVST 417 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~~-~~~~---~~~~~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~------~~~~~ 417 (475)
++ +++ .|+.|++||+++ +... ....+...+.+++|+| +++.+++ ++.+|.|++|++... +....
T Consensus 163 l~-~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~--~~~dg~i~i~~~~~~~~~~~~~~~~~ 237 (342)
T 1yfq_A 163 LI-VGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC--SSIDGRVAVEFFDDQGDDYNSSKRFA 237 (342)
T ss_dssp EE-EEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE--EETTSEEEEEECCTTCCSTTCTTCEE
T ss_pred EE-EEe--CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEE--EecCCcEEEEEEcCCCccccccccee
Confidence 44 443 799999999998 5532 3335678899999999 9999998 788999999999887 77888
Q ss_pred ecCCCc---------ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCccc--CCccccc
Q 011916 418 LTGHSL---------RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALVK--DTSLWSL 469 (475)
Q Consensus 418 l~~h~~---------~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~~--~~~v~s~ 469 (475)
+..|.. .|.+++|+|++++|++++.||.|++||+..+.....+.. ...++++
T Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~ 300 (342)
T 1yfq_A 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300 (342)
T ss_dssp EECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred eecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEe
Confidence 888865 999999999999999999999999999998776555432 3445443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=264.75 Aligned_cols=239 Identities=19% Similarity=0.362 Sum_probs=196.1
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEE--EEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVT--RLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~--~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~ 240 (475)
+.-.|.+++|+++ .+++++.|+.|+|||+.++... ..+. +|.+.|.+++|++ ++++|++|+.||+|+|||+.+
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~ 90 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREEN 90 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSS
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCC
Confidence 3456889999985 4666777999999999887543 3333 8999999999986 489999999999999999988
Q ss_pred C--eeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCcc--EEEecCccCCEEEEEEcCC---------
Q 011916 241 C--KRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDY--ICKLAGHKSEVCGLKWSHD--------- 303 (475)
Q Consensus 241 ~--~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~s~~--------- 303 (475)
+ +.+..+.+|...|.+++|+ +.+|++|+.|+.|++||++..... ...+.+|...|.+++|+|+
T Consensus 91 ~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~ 170 (316)
T 3bg1_A 91 GTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDH 170 (316)
T ss_dssp SCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------
T ss_pred CcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcccccc
Confidence 7 4667788999999999995 468999999999999999854322 3456789999999999997
Q ss_pred --------CCEEEEEeCCCcEEEEECCCC---ceeEEEeccccceeEEEECCCC---CcEEEEecCCCCCeEEEEECCCC
Q 011916 304 --------DRELASGGNDNQLLVWNQHSQ---QPTLRLTEHTAAVKAIAWSPHQ---SSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 304 --------~~~lasg~~Dg~I~iwd~~~~---~~~~~~~~h~~~v~~l~~sp~~---~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
+++|++|+.|+.|++||++.. +++..+.+|...|.+++|+|++ ..++++++ .|++|++||+.+.
T Consensus 171 ~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s--~D~~v~iw~~~~~ 248 (316)
T 3bg1_A 171 PSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCS--QDGRVFIWTCDDA 248 (316)
T ss_dssp CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEE--TTCEEEEEECSST
T ss_pred ccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEc--CCCeEEEEEccCc
Confidence 478999999999999999755 4566788899999999999987 24667765 8999999998763
Q ss_pred c----eeee-ecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 370 H----QLNS-VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 370 ~----~~~~-~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
. .... ..+...|.+++|+|+++.|++ ++.|+.|++|+..
T Consensus 249 ~~~~~~~~~~~~~~~~v~~v~~sp~g~~las--~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 249 SSNTWSPKLLHKFNDVVWHVSWSITANILAV--SGGDNKVTLWKES 292 (316)
T ss_dssp TCCCCBCCEEEECSSCEEEEEECTTTCCEEE--EESSSCEEEEEEC
T ss_pred cccchhhhhhhcCCCcEEEEEEcCCCCEEEE--EcCCCeEEEEEEC
Confidence 1 1112 246788999999999999998 7899999999975
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-30 Score=251.81 Aligned_cols=259 Identities=20% Similarity=0.320 Sum_probs=213.7
Q ss_pred eEEEEECCCCcEE--EEeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCC-----eeeEEecCCCCceEEEEeC
Q 011916 189 CVYLWTASNSKVT--RLCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQC-----KRVRTFGGHQTRAGVLAWN 260 (475)
Q Consensus 189 ~V~lw~~~~~~~~--~~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~~-----~~~~~~~~h~~~v~~l~~~ 260 (475)
.++++...+.+.. ..+. +|.+.|++|+|+|+ +++||+|+.||+|+|||+.+. .+...+.+|...|.+++|+
T Consensus 17 ~~~~~~~~~~~~~l~~tL~-GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 17 NLYFQSMMTEQMTLRGTLK-GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp ---------CEEEEEEEEC-CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEEC
T ss_pred cEEEEEccCCceEEEEEEC-CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEEC
Confidence 3555555555433 3343 89999999999997 689999999999999998764 3567788999999999994
Q ss_pred --CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee-EEEeccccce
Q 011916 261 --SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT-LRLTEHTAAV 337 (475)
Q Consensus 261 --~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~-~~~~~h~~~v 337 (475)
+.+|++|+.|+.|++|+.. ..........+...+..+.+++++.+|++|+.|+.+++||+...... .....|...+
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v 174 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLT-TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 174 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETT-TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred CCCCEEEEEcccccceEEeec-ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcc
Confidence 6899999999999999998 56666777788889999999999999999999999999999866543 3445689999
Q ss_pred eEEEECCCCCc-EEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE
Q 011916 338 KAIAWSPHQSS-LLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKV 415 (475)
Q Consensus 338 ~~l~~sp~~~~-ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~ 415 (475)
..++|++++.. ++++++ .|+.|++||+.+++.+..+. +...|.+++|+|++++|++ |+.|+.|++||+.+.+.+
T Consensus 175 ~~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~s~Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCG--WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCAS--GGKDGQAMLWDLNEGKHL 250 (340)
T ss_dssp EEEEECSCSSSCEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EETTCEEEEEETTTTEEE
T ss_pred cceEEccCCCCcEEEEEc--CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEE--EeCCCeEEEEEeccCcee
Confidence 99999987643 556655 89999999999999888874 6788999999999999998 889999999999999999
Q ss_pred EEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 416 STLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
..+..+ ..|..++|+|++.++ +++.|+.|++||+....
T Consensus 251 ~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~ 288 (340)
T 4aow_A 251 YTLDGG-DIINALCFSPNRYWL-CAATGPSIKIWDLEGKI 288 (340)
T ss_dssp EEEECS-SCEEEEEECSSSSEE-EEEETTEEEEEETTTTE
T ss_pred eeecCC-ceEEeeecCCCCcee-eccCCCEEEEEECCCCe
Confidence 888755 579999999998655 56679999999998654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-31 Score=282.48 Aligned_cols=243 Identities=19% Similarity=0.306 Sum_probs=211.5
Q ss_pred CCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC-----CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEEC
Q 011916 207 GPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQ-----CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDL 278 (475)
Q Consensus 207 ~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~-----~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~ 278 (475)
+|.+.|++|+|++++ ++|++|+.||+|+||++.+ +.....+.+|...|.+++|+ +++|++|+.||+|++||+
T Consensus 380 ~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~ 459 (694)
T 3dm0_A 380 AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDL 459 (694)
T ss_dssp CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 899999999999864 7999999999999999875 34567788999999999994 689999999999999999
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE---eccccceeEEEECCCCC-cEEEEec
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL---TEHTAAVKAIAWSPHQS-SLLASGG 354 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~-~ll~sg~ 354 (475)
. .+.....+.+|...|.+++|+|++++|++|+.|++|++||.......... .+|...|.+++|+|++. .++++++
T Consensus 460 ~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 538 (694)
T 3dm0_A 460 A-AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSAS 538 (694)
T ss_dssp T-TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred C-CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEe
Confidence 8 56778889999999999999999999999999999999998765433222 35888999999999873 3666665
Q ss_pred CCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 355 GTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
.|+.|++||++++++...+. |...|.+++|+|++++|++ |+.||.|++||+.+++.+..+.. ...|.+++|+|+
T Consensus 539 --~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s--g~~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~ 613 (694)
T 3dm0_A 539 --WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCAS--GGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPN 613 (694)
T ss_dssp --TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE--EETTSBCEEEETTTTEEEECCBC-SSCEEEEEECSS
T ss_pred --CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE--EeCCCeEEEEECCCCceEEEecC-CCcEEEEEEcCC
Confidence 89999999999999888775 6788999999999999998 88999999999999998888764 467999999999
Q ss_pred CCEEEEEeCCCCEEEEecCCCCC
Q 011916 434 GQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+.+|++++ |+.|+|||+..+..
T Consensus 614 ~~~l~~~~-~~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 614 RYWLCAAT-EHGIKIWDLESKSI 635 (694)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEE
T ss_pred CcEEEEEc-CCCEEEEECCCCCC
Confidence 99888765 55699999987654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-30 Score=256.82 Aligned_cols=270 Identities=13% Similarity=0.124 Sum_probs=225.8
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI-SVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW 259 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~l-a~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~ 259 (475)
+++++.++.|++||+.+++....+. +...+.+++|+|+|++| ++++.|+.|++||+.+++.+..+..+. .+.+++|
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~ 81 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIP--VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAV 81 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEee--cCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEE
Confidence 3444558999999999999888775 33568999999999987 566689999999999999999887665 8999999
Q ss_pred C--CCEE-EEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEecccc
Q 011916 260 N--SRIL-SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL-ASGGNDNQLLVWNQHSQQPTLRLTEHTA 335 (475)
Q Consensus 260 ~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-asg~~Dg~I~iwd~~~~~~~~~~~~h~~ 335 (475)
+ +++| ++++.++.|.+||+. .++.+..+.. ...+.+++|+|+++.| ++++.|+.|++||+.+++.+..+..+ .
T Consensus 82 spdg~~l~~~~~~~~~v~v~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~ 158 (391)
T 1l0q_A 82 SPDGKQVYVTNMASSTLSVIDTT-SNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R 158 (391)
T ss_dssp CTTSSEEEEEETTTTEEEEEETT-TTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred CCCCCEEEEEECCCCEEEEEECC-CCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence 5 5666 455677999999998 4555555554 4568999999999977 67888999999999999888877765 4
Q ss_pred ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCce
Q 011916 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAK 414 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~ 414 (475)
.+.+++|+|+++.++++++ .++.|++||+.+++.+..+.+...+.+++|+|+++.++++... .++.|++||+.+++.
T Consensus 159 ~~~~~~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp SEEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred CcceEEECCCCCEEEEEeC--CCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 5699999999998877765 7999999999999999988888889999999999999984211 689999999999999
Q ss_pred EEEecCCCcceEEEEECCCCCEE-EEEeCCCCEEEEecCCCCCCCC
Q 011916 415 VSTLTGHSLRVLYLATSPDGQTI-VTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 415 ~~~l~~h~~~V~~l~~spdg~~l-~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+..+..|. .+.+++|+|+|++| ++++.|+.|++||+..+.....
T Consensus 237 ~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~ 281 (391)
T 1l0q_A 237 TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITAT 281 (391)
T ss_dssp EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEE
Confidence 98888765 47899999999987 5678899999999987765443
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-30 Score=259.75 Aligned_cols=277 Identities=13% Similarity=0.072 Sum_probs=234.7
Q ss_pred eeEEecCCCC-EEEEEc-CCeEEEEECCCCcEEEEeeC----CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 171 LNLVDWSSQN-VLAVGL-GTCVYLWTASNSKVTRLCDL----GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 171 v~~l~ws~~~-~la~~~-~~~V~lw~~~~~~~~~~~~~----~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+.+++|+++. +++++. ++.|++||..+++....... +|...|.+++|+++++++++++.||.|++||+.+++.+
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~ 204 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYK 204 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEE
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEE
Confidence 4578898864 444444 67899999999998875432 67789999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEeC--CCEE-EEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe--------CC
Q 011916 245 RTFGGHQTRAGVLAWN--SRIL-SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG--------ND 313 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~--------~D 313 (475)
..+..|...+.+++|+ +..+ ++++.|+.|.+||++ .+..+..+.. ...+.+++|+|++++|++++ .|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~-~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 205 ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK-TKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC-CCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence 9999999999999995 5666 555689999999998 4555555554 45599999999999999988 58
Q ss_pred CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeE
Q 011916 314 NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 314 g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l 393 (475)
+.|++||+.+++.+..+ .|...+.+++|+|+++.++++++ .|+.|++||+.+++.+..+.+...+.+++|+|+++.+
T Consensus 283 g~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 359 (433)
T 3bws_A 283 GRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM--CCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYL 359 (433)
T ss_dssp EEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET--TTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEE
T ss_pred CeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec--CCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEE
Confidence 89999999998876655 46678999999999998888865 8999999999999999999888899999999999998
Q ss_pred EEEEecC-------------CCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC-CCCEEEEecCC
Q 011916 394 VSTHGYS-------------QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG-DETLRFWNVFP 453 (475)
Q Consensus 394 ~~~~g~~-------------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~ 453 (475)
+++.... ||.|++||..+++.+..+.. ...+.+++|+|||++|++++. |+.|++|++..
T Consensus 360 ~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 360 YVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred EEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 8853221 57999999999999888876 457899999999999998875 99999999864
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-32 Score=273.80 Aligned_cols=247 Identities=17% Similarity=0.197 Sum_probs=203.8
Q ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeee--EEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCC
Q 011916 207 GPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKRV--RTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 207 ~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~--~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~ 280 (475)
+|...|++|+|+| ++++||+|+.||.|+|||+.+++.. ..+.+|...|.+|+|+ +++|++|+.||+|++||++.
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 5678899999999 5679999999999999999876544 4456899999999995 57999999999999999973
Q ss_pred CCccEEEec--CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC
Q 011916 281 SSDYICKLA--GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 281 ~~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
........ .+...+++++|++++++|++|+.||.|++||++. +.+..+..|...|.+++|+|++..++++++ .|
T Consensus 197 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s--~d 272 (435)
T 4e54_B 197 -NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATAS--VD 272 (435)
T ss_dssp -CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEE--TT
T ss_pred -CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEec--Cc
Confidence 33222222 2345678999999999999999999999999975 456778899999999999999998888876 89
Q ss_pred CeEEEEECCCCceeeee----cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc------eEEE
Q 011916 359 RCIRFWNTSNGHQLNSV----DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR------VLYL 428 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~----~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~------V~~l 428 (475)
+.|++||+++++....+ .|...|.+++|+|++++|++ ++.||.|+|||+.++.....+..|... +..+
T Consensus 273 ~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s--~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (435)
T 4e54_B 273 QTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLT--TDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKA 350 (435)
T ss_dssp SBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEE--EESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBC
T ss_pred ceeeEEecccccccceEEEeeeccccccceeECCCCCeeEE--EcCCCEEEEEECCCCccceEEecccccccccceeEEE
Confidence 99999999887654433 46788999999999999998 889999999999999888888776532 3456
Q ss_pred EECCCCCEEEEEe------------CCCCEEEEecCCCCCCCC
Q 011916 429 ATSPDGQTIVTGA------------GDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 429 ~~spdg~~l~s~s------------~Dg~I~iW~~~~~~~~~~ 459 (475)
.|+|++.+++++. .++.|++||+.++.....
T Consensus 351 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 351 AWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp EECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred EEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 7888877777664 235799999988776544
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-30 Score=255.74 Aligned_cols=276 Identities=13% Similarity=0.119 Sum_probs=217.9
Q ss_pred CCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCCeeeE
Q 011916 168 DFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI-SVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~l-a~g~~dg~v~iwd~~~~~~~~ 245 (475)
.-.|.+++|+++ .+++++.++.++||+..+++....... ..+..+++.++++.+ ++|+.|++|+|||+.+++.+.
T Consensus 19 ~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~ 95 (355)
T 3vu4_A 19 SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEM---RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVS 95 (355)
T ss_dssp CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEEC---SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEE
T ss_pred CCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeec---CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEE
Confidence 345888999997 788888888899999988776555432 247788899988887 467778999999999999999
Q ss_pred EecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE--EeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS--GGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las--g~~Dg~I~iwd~~~ 323 (475)
.+. +...|.+++++++.++++. |+.|++||+....+.+..+.. ....+++++ .++++ |+.||.|++||+.+
T Consensus 96 ~~~-~~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~ 168 (355)
T 3vu4_A 96 RIK-VDAPVKDLFLSREFIVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQS 168 (355)
T ss_dssp EEE-CSSCEEEEEECSSEEEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC
T ss_pred EEE-CCCceEEEEEcCCEEEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCC
Confidence 887 6679999999988777765 789999999854233333333 344455666 56766 58899999999997
Q ss_pred Cc---------------e-eEEEeccccceeEEEECCCCCcEEEEecCCCCCe-EEEEECCCCceeeeec---CCCCeeE
Q 011916 324 QQ---------------P-TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC-IRFWNTSNGHQLNSVD---TGSQVCN 383 (475)
Q Consensus 324 ~~---------------~-~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~-I~iwd~~~~~~~~~~~---~~~~v~~ 383 (475)
+. + +..+.+|...|.+++|+|++.+ +++++ .|++ |++||+.+++++..+. +...|.+
T Consensus 169 ~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~-l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~ 245 (355)
T 3vu4_A 169 SGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM-VATCS--QDGTIIRVFKTEDGVLVREFRRGLDRADVVD 245 (355)
T ss_dssp ------------------CCEEECCCSSCEEEEEECTTSSE-EEEEE--TTCSEEEEEETTTCCEEEEEECTTCCSCEEE
T ss_pred CCccccccccccccccCcccEEEEccCCceEEEEECCCCCE-EEEEe--CCCCEEEEEECCCCcEEEEEEcCCCCCcEEE
Confidence 65 2 6788999999999999999985 55544 8998 9999999999999987 7889999
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEec---------------------CCCcceEEEEECCCCCEEEEE
Q 011916 384 LAWSKNVNELVSTHGYSQNQIMVWKYPSMAK--VSTLT---------------------GHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~--~~~l~---------------------~h~~~V~~l~~spdg~~l~s~ 440 (475)
++|+|++++|++ ++.|+.|++||+..... ...+. .+......++|++||++|+++
T Consensus 246 ~~~s~~~~~l~s--~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~ 323 (355)
T 3vu4_A 246 MKWSTDGSKLAV--VSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVW 323 (355)
T ss_dssp EEECTTSCEEEE--EETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEE
T ss_pred EEECCCCCEEEE--EECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEE
Confidence 999999999999 88999999999975431 11111 112234678999999999999
Q ss_pred eCCCCEEEEecCCCCCCC
Q 011916 441 AGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 441 s~Dg~I~iW~~~~~~~~~ 458 (475)
+.||.+++|++..+....
T Consensus 324 ~~dg~~~~~~~~~~~~~~ 341 (355)
T 3vu4_A 324 PHTRMIETFKVVFDDEME 341 (355)
T ss_dssp TTTTEEEEEEEEEETTTT
T ss_pred eCCCeEEEEEEEcCCCCc
Confidence 999999999998765443
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-31 Score=287.82 Aligned_cols=244 Identities=17% Similarity=0.302 Sum_probs=210.5
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~--~~~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~ 280 (475)
+|.+.|++++|+|+|++|++|+.||.|+|||+. +++.+..+.+|...|.+++|+ +++|++|+.||.|++||+..
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 899999999999999999999999999999987 567788899999999999994 78999999999999999984
Q ss_pred CC-ccEEEecCccCCEEEEEEcCC--CCEEEEEeCCCcEEEEECCCC--ceeEEEeccccceeEEEECCC----------
Q 011916 281 SS-DYICKLAGHKSEVCGLKWSHD--DRELASGGNDNQLLVWNQHSQ--QPTLRLTEHTAAVKAIAWSPH---------- 345 (475)
Q Consensus 281 ~~-~~~~~~~~h~~~V~~l~~s~~--~~~lasg~~Dg~I~iwd~~~~--~~~~~~~~h~~~v~~l~~sp~---------- 345 (475)
.. ..+..+.+|...|.+++|+|+ +++|++|+.||.|++||++.+ .....+..|...|.+++|+|.
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 32 266778889999999999999 999999999999999999877 345567789999999999994
Q ss_pred ---CCcEEEEecCCCCCeEEEEECCCCc----eeeee-cCCCCeeEEEEcCC---CCeEEEEEecCCCeEEEEECCCCc-
Q 011916 346 ---QSSLLASGGGTADRCIRFWNTSNGH----QLNSV-DTGSQVCNLAWSKN---VNELVSTHGYSQNQIMVWKYPSMA- 413 (475)
Q Consensus 346 ---~~~ll~sg~Gs~d~~I~iwd~~~~~----~~~~~-~~~~~v~~l~~s~~---~~~l~~~~g~~dg~I~iwd~~~~~- 413 (475)
+..+++ |+ .||.|++||++++. ....+ .+...|.+++|+|+ ++.+++ |+.||.|++||+.+++
T Consensus 167 ~~d~~~l~s-gs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s--~s~Dg~I~iwd~~~~~~ 241 (753)
T 3jro_A 167 TKESRKFVT-GG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS--VSQDRTCIIWTQDNEQG 241 (753)
T ss_dssp CGGGCCEEE-EE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE--EESSSCEEEEEESSSSS
T ss_pred CCCCCEEEE-EE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE--EecCCEEEEecCCCCCC
Confidence 664544 44 79999999998874 33333 36788999999999 788888 8899999999998864
Q ss_pred ----eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 414 ----KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 414 ----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.+.....|...|++++|+|+|.+|++++.||.|++|++....
T Consensus 242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 333445688999999999999999999999999999998644
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-30 Score=255.20 Aligned_cols=239 Identities=19% Similarity=0.367 Sum_probs=200.1
Q ss_pred CCceeEEecCCC-C-EEEEEcCCeEEEEECCCC--cEEEEeeCCCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCCC
Q 011916 168 DFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNS--KVTRLCDLGPGDSVCSVQWTRE--GSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 168 d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~--~~~~~~~~~~~~~V~~v~~spd--g~~la~g~~dg~v~iwd~~~~ 241 (475)
.-.|.+++|+++ . +++++.|+.|+||++... +....+. +|...|++++|+++ +++|++|+.||.|++||+.++
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 89 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG 89 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence 456889999986 4 555556999999999844 4444443 78999999999987 999999999999999999998
Q ss_pred e--eeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCC-ccEEEecCccCCEEEEEEcC------------
Q 011916 242 K--RVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSH------------ 302 (475)
Q Consensus 242 ~--~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~------------ 302 (475)
+ .+..+..|...|.+++|+ +.+|++++.|+.|++||++... .....+..|...|.+++|+|
T Consensus 90 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 169 (379)
T 3jrp_A 90 RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGT 169 (379)
T ss_dssp EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------
T ss_pred ceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCC
Confidence 7 777888999999999995 6799999999999999998543 34556778999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCc----eeEEEeccccceeEEEECCC---CCcEEEEecCCCCCeEEEEECCCCce---
Q 011916 303 -DDRELASGGNDNQLLVWNQHSQQ----PTLRLTEHTAAVKAIAWSPH---QSSLLASGGGTADRCIRFWNTSNGHQ--- 371 (475)
Q Consensus 303 -~~~~lasg~~Dg~I~iwd~~~~~----~~~~~~~h~~~v~~l~~sp~---~~~ll~sg~Gs~d~~I~iwd~~~~~~--- 371 (475)
++.+|++|+.|+.|++||++.+. .+..+..|...|.+++|+|+ +. ++++++ .|+.|++||+.++..
T Consensus 170 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~--~dg~i~iwd~~~~~~~~~ 246 (379)
T 3jrp_A 170 KESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVS--QDRTCIIWTQDNEQGPWK 246 (379)
T ss_dssp CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEE--TTSCEEEEEESSTTSCCE
T ss_pred CCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCC-eEEEEe--CCCEEEEEeCCCCCccce
Confidence 69999999999999999998764 34567789999999999999 55 555554 899999999998742
Q ss_pred eeee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011916 372 LNSV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 372 ~~~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
.... .+...|.+++|+|++++|++ ++.||.|++|++...
T Consensus 247 ~~~~~~~~~~~~v~~~~~s~~g~~l~~--~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 247 KTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENLE 288 (379)
T ss_dssp EEESSSSCCSSCEEEEEECSSSCCEEE--EESSSSEEEEEEEET
T ss_pred eeeeccccCCCcEEEEEEcCCCCEEEE--ecCCCcEEEEeCCCC
Confidence 2222 36678999999999999998 778999999998743
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=7.4e-30 Score=258.76 Aligned_cols=233 Identities=24% Similarity=0.450 Sum_probs=209.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
+|...|.+++| ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|++++|++|+.||.|++||+. .+..+.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~-~~~~~~ 207 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVN-TGEMLN 207 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESS-SCCEEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECC-CCcEEE
Confidence 56678988877 799999999999999999999999999999999999999999999999999999999998 567788
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT---LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~---~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
.+.+|...|.+++|+ +..|++|+.||.|++||+.++... ..+.+|...|.+++| ++. ++++++ .|+.|++
T Consensus 208 ~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~-~l~s~~--~dg~i~v 280 (435)
T 1p22_A 208 TLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDK-YIVSAS--GDRTIKV 280 (435)
T ss_dssp EECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETT-EEEEEE--TTSEEEE
T ss_pred EEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCC-EEEEEe--CCCeEEE
Confidence 899999999999996 459999999999999999987765 667789999999999 555 455544 7999999
Q ss_pred EECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 364 WNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 364 wd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
||+.+++++..+. +...+.++.|+ ++.+++ |+.||.|++||+.+++.+..+.+|...|.+++| ++.+|++|+.
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~ 354 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAY 354 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEE--TTEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEET
T ss_pred EECCcCcEEEEEcCCCCcEEEEEeC--CCEEEE--EeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeC
Confidence 9999999998885 66789999984 678887 889999999999999999999999999999999 8899999999
Q ss_pred CCCEEEEecCCCC
Q 011916 443 DETLRFWNVFPSL 455 (475)
Q Consensus 443 Dg~I~iW~~~~~~ 455 (475)
||.|++||+..+.
T Consensus 355 dg~i~vwd~~~~~ 367 (435)
T 1p22_A 355 DGKIKVWDLVAAL 367 (435)
T ss_dssp TSCEEEEEHHHHT
T ss_pred CCcEEEEECCCCC
Confidence 9999999997654
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.5e-30 Score=248.33 Aligned_cols=246 Identities=16% Similarity=0.282 Sum_probs=202.5
Q ss_pred CCceeEEecCCC-C-EEEEEcCCeEEEEECCCCc----EEEEeeCCCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC
Q 011916 168 DFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSK----VTRLCDLGPGDSVCSVQWTR--EGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 168 d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~----~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~ 239 (475)
.-.|.+++|+++ . +++++.|+.|++|++.++. ....+. +|...|.+++|+| ++++|++|+.||.|++||+.
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~ 89 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEED 89 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEC
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecC
Confidence 446899999986 3 6666679999999998763 334343 7899999999999 69999999999999999998
Q ss_pred CC---------eeeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCccEE------------EecCccCC
Q 011916 240 QC---------KRVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDYIC------------KLAGHKSE 294 (475)
Q Consensus 240 ~~---------~~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~------------~~~~h~~~ 294 (475)
++ +.+..+.+|...|.+++|+ +.+|++++.||.|++||++....... ....|...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (351)
T 3f3f_A 90 PDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQS 169 (351)
T ss_dssp TTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCC
T ss_pred CCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccc
Confidence 87 6688888999999999995 67999999999999999984432110 01267889
Q ss_pred EEEEEEcCC---CCEEEEEeCCCcEEEEECCCCce--eEEEeccccceeEEEECCCCC---cEEEEecCCCCCeEEEEEC
Q 011916 295 VCGLKWSHD---DRELASGGNDNQLLVWNQHSQQP--TLRLTEHTAAVKAIAWSPHQS---SLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 295 V~~l~~s~~---~~~lasg~~Dg~I~iwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~---~ll~sg~Gs~d~~I~iwd~ 366 (475)
+.+++|+|+ +.+|++++.|+.+.+|+...++. +..+.+|...|.+++|+|++. .++++++ .|+.|++||+
T Consensus 170 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~--~dg~i~iwd~ 247 (351)
T 3f3f_A 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC--KDGRIRIFKI 247 (351)
T ss_dssp CEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE--TTSCEEEEEE
T ss_pred eeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc--CCCeEEEEeC
Confidence 999999997 99999999999998888887765 667778999999999999983 4666665 8999999999
Q ss_pred CCC----------------------------------------------ceeeeec-CCCCeeEEEEcCCCCeEEEEEec
Q 011916 367 SNG----------------------------------------------HQLNSVD-TGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 367 ~~~----------------------------------------------~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
.++ +.+..+. +...|.+++|+|++++|++ ++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~~ 325 (351)
T 3f3f_A 248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSS--AG 325 (351)
T ss_dssp EECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEE--EE
T ss_pred CCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEE--ec
Confidence 875 3344443 6678999999999999999 88
Q ss_pred CCCeEEEEECCCCceEEEe
Q 011916 400 SQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l 418 (475)
.||.|++||+.+++.+..+
T Consensus 326 ~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 326 DDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp TTSCEEEEEECTTSCEEEE
T ss_pred CCCcEEEEecCcCcchhhe
Confidence 9999999999987654443
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-29 Score=253.40 Aligned_cols=245 Identities=22% Similarity=0.362 Sum_probs=206.9
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCee
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT-QCKR 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~-~~~~ 243 (475)
+...+.+++|+++ . +++++.++.|++||+.+++....+. +|...|.+++| ++++|++|+.||.|++||+. ....
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcce
Confidence 4567999999986 3 5555669999999999999888776 88999999999 56799999999999999998 5677
Q ss_pred eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC-CEEEEEe--CCCcEEE
Q 011916 244 VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD-RELASGG--NDNQLLV 318 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~lasg~--~Dg~I~i 318 (475)
+..+.+|...|.+++|+ +.+|++|+.|+.|++||++ ....+..+..|...|.+++|+|++ .++++|+ .|+.|++
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR-SSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-CSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC-CCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 88899999999999994 6899999999999999998 567777888999999999999966 4666665 7999999
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee---cCCCCeeEEEEcCCCCeEEE
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV---DTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~---~~~~~v~~l~~s~~~~~l~~ 395 (475)
||+.+++.+..+. +...|.+++|+|++..+++++ |..|+.|++||+.+++..... .+...|.+++|+|++++|++
T Consensus 289 ~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~-g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 366 (401)
T 4aez_A 289 WNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTH-GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILST 366 (401)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEE-CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEE
T ss_pred EECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEe-ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEE
Confidence 9999999888875 677899999999999777764 458999999999987665543 46788999999999999999
Q ss_pred EEecCCCeEEEEECCCCceEEEec
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~ 419 (475)
++.||.|++|++.+++.+....
T Consensus 367 --~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 367 --AASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp --ECTTSEEEEEECCC--------
T ss_pred --EeCCCcEEEEECCCCccccccc
Confidence 8899999999999988766543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=256.49 Aligned_cols=277 Identities=12% Similarity=0.149 Sum_probs=199.9
Q ss_pred eeEEecC---C--CCEEEEEcCCeEEEEECCCC--------cEEEEeeCCCCCcEEEEEEc-------------------
Q 011916 171 LNLVDWS---S--QNVLAVGLGTCVYLWTASNS--------KVTRLCDLGPGDSVCSVQWT------------------- 218 (475)
Q Consensus 171 v~~l~ws---~--~~~la~~~~~~V~lw~~~~~--------~~~~~~~~~~~~~V~~v~~s------------------- 218 (475)
...+.|. + .++++++.++.|.+|+.... ....+....+...+..+.|+
T Consensus 18 p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (393)
T 4gq1_A 18 PYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSS 97 (393)
T ss_dssp EEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------C
T ss_pred CeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeec
Confidence 3445663 2 36999999999999976321 11122222344455555554
Q ss_pred -CCCCEEEEEeCCCeEEEEECCCCeeeE-----EecCCCCceEEEEeC----------CCEEEEEeCCCcEEEEECCCCC
Q 011916 219 -REGSYISVGTNLGQVQVWDGTQCKRVR-----TFGGHQTRAGVLAWN----------SRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 219 -pdg~~la~g~~dg~v~iwd~~~~~~~~-----~~~~h~~~v~~l~~~----------~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
+++.+||+|+.|++|+|||+.+++... .+.+|...|.+++|+ +++|++|+.|++|+|||++ ..
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~-~~ 176 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT-DE 176 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE-TT
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC-CC
Confidence 345689999999999999998876543 467999999999994 5799999999999999998 45
Q ss_pred ccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEE-------------------------Eeccccc
Q 011916 283 DYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLR-------------------------LTEHTAA 336 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~-------------------------~~~h~~~ 336 (475)
..+..+..|...|.+++|+|++ .+|++|+.|++|++||+++++.... ..+|...
T Consensus 177 ~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 256 (393)
T 4gq1_A 177 GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASS 256 (393)
T ss_dssp EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSS
T ss_pred ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccccc
Confidence 5666777889999999999987 4899999999999999987654322 2357778
Q ss_pred eeEEEEC-CCCCcEEEEecCCCCCeEEEEECCCCceeeeec-------------------CCCCeeEEEEcCCCCeEEEE
Q 011916 337 VKAIAWS-PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-------------------TGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 337 v~~l~~s-p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-------------------~~~~v~~l~~s~~~~~l~~~ 396 (475)
+.++.|+ |++..+++ ++ .|+.+++||+.+++....+. .........|++....++++
T Consensus 257 v~~v~~~~~dg~~l~s-~s--~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (393)
T 4gq1_A 257 LANVRWIGSDGSGILA-MC--KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT 333 (393)
T ss_dssp CSEEEEETTTTCEEEE-EC--TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred ceeeeeecCCCCEEEE-Ee--CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence 8999986 78875554 43 89999999998776544432 11222334455543333333
Q ss_pred EecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+|+.||.|++||+.+++.+..+.+|...|.+++|+|||++||+++.|| +.+|.+.
T Consensus 334 sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 334 AHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 388999999999999999888888999999999999999999998776 6666654
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-30 Score=249.78 Aligned_cols=266 Identities=17% Similarity=0.218 Sum_probs=213.3
Q ss_pred EECCCCcEEEEeeCCCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEECCC-Ceee-EEecCCCCceEEEEeC--CCEEE
Q 011916 193 WTASNSKVTRLCDLGPGDSVCSVQWTRE---GSYISVGTNLGQVQVWDGTQ-CKRV-RTFGGHQTRAGVLAWN--SRILS 265 (475)
Q Consensus 193 w~~~~~~~~~~~~~~~~~~V~~v~~spd---g~~la~g~~dg~v~iwd~~~-~~~~-~~~~~h~~~v~~l~~~--~~~l~ 265 (475)
|+....+....+. +|.+.|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ..+.+|...|.+++|+ +++|+
T Consensus 24 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 102 (368)
T 3mmy_A 24 DNHNPMKDIEVTS-SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVF 102 (368)
T ss_dssp CSSCTTCCEECSS-CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEE
T ss_pred CCCCCcceeEecc-CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEE
Confidence 3444445555544 88999999999998 69999999999999999987 5554 7788999999999995 68999
Q ss_pred EEeCCCcEEEEECCCCCccEEEecCccCCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEEC
Q 011916 266 SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKW--SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 266 sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~s 343 (475)
+++.||.|++||++ .... ..+..|...|.+++| ++++++|++++.|+.|++||+++++.+..+..+. .+.++.+.
T Consensus 103 s~~~dg~v~iwd~~-~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~ 179 (368)
T 3mmy_A 103 TASCDKTAKMWDLS-SNQA-IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI 179 (368)
T ss_dssp EEETTSEEEEEETT-TTEE-EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE
T ss_pred EEcCCCcEEEEEcC-CCCc-eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec
Confidence 99999999999998 3443 346679999999999 8999999999999999999999999988887664 56677776
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeee---cCCCCeeEEEEcCCCCe----EEEEEecCCCeEEEEECCCC---c
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSV---DTGSQVCNLAWSKNVNE----LVSTHGYSQNQIMVWKYPSM---A 413 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~---~~~~~v~~l~~s~~~~~----l~~~~g~~dg~I~iwd~~~~---~ 413 (475)
++ .+++.+ .++.+.+|++......... .....+.++.+.++... +++ ++.+|.|++||+... .
T Consensus 180 ~~--~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dg~i~i~~~~~~~~~~ 252 (368)
T 3mmy_A 180 YP--MAVVAT---AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL--GSIEGRVAIHYINPPNPAK 252 (368)
T ss_dssp TT--EEEEEE---GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE--EETTSEEEEEESSCSCHHH
T ss_pred CC--eeEEEe---CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE--ecCCCcEEEEecCCCCccc
Confidence 54 344433 6999999999876554433 23455667777666554 666 889999999999887 6
Q ss_pred eEEEecCCCc------------ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc-cCCccccc
Q 011916 414 KVSTLTGHSL------------RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV-KDTSLWSL 469 (475)
Q Consensus 414 ~~~~l~~h~~------------~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~ 469 (475)
.+..+.+|.. .|.+++|+|++++|++++.||.|++||+..+.....+. +...+.++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 321 (368)
T 3mmy_A 253 DNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISAC 321 (368)
T ss_dssp HSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEE
T ss_pred cceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEE
Confidence 6778888876 79999999999999999999999999999876655443 34444433
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=257.27 Aligned_cols=239 Identities=20% Similarity=0.337 Sum_probs=201.7
Q ss_pred EEEEEcCCCCEE-EEEeCCCeEEEEECCCCe----eeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCC--
Q 011916 213 CSVQWTREGSYI-SVGTNLGQVQVWDGTQCK----RVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSS-- 282 (475)
Q Consensus 213 ~~v~~spdg~~l-a~g~~dg~v~iwd~~~~~----~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~-- 282 (475)
..++++|+...+ ++++.||.|+||++.... .+..+.+|...|.+++|+ +++|++|+.||.|++||+....
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV 117 (402)
T ss_dssp CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence 357788876544 457889999999986642 345677999999999994 5899999999999999998543
Q ss_pred ----ccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeEEE--eccccceeEEEECCCCCcEEEEecC
Q 011916 283 ----DYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQPTLRL--TEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 283 ----~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
..+..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++.+..+ ..|...|.+++|+|++..|++++
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 195 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC-- 195 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE--
T ss_pred cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe--
Confidence 5677889999999999999998 69999999999999999999999998 78999999999999999666644
Q ss_pred CCCCeEEEEECCCCceeeee-c-CCC-CeeEEEEcCCCCeEEEEEe---cCCCeEEEEECCCCce-EEEec-CCCcceEE
Q 011916 356 TADRCIRFWNTSNGHQLNSV-D-TGS-QVCNLAWSKNVNELVSTHG---YSQNQIMVWKYPSMAK-VSTLT-GHSLRVLY 427 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~-~-~~~-~v~~l~~s~~~~~l~~~~g---~~dg~I~iwd~~~~~~-~~~l~-~h~~~V~~ 427 (475)
.|+.|++||+++++.+..+ . +.+ .+..+.|+|++.+|++ | ..++.|++||+.+++. +.... .|...|.+
T Consensus 196 -~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 272 (402)
T 2aq5_A 196 -RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTT--GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL 272 (402)
T ss_dssp -TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEE--EECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE
T ss_pred -cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEE--eccCCCCceEEEEcCccccCCceEEeccCCCceeE
Confidence 7999999999999998887 3 333 3899999999998888 7 6899999999988654 33332 57788999
Q ss_pred EEECCCCCEEEE-EeCCCCEEEEecCCCCC
Q 011916 428 LATSPDGQTIVT-GAGDETLRFWNVFPSLK 456 (475)
Q Consensus 428 l~~spdg~~l~s-~s~Dg~I~iW~~~~~~~ 456 (475)
++|+|++++|++ ++.||.|++|++..+..
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 999999999975 55799999999998764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=252.54 Aligned_cols=256 Identities=11% Similarity=0.010 Sum_probs=205.1
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC---------CCeeeEEec-C
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT---------QCKRVRTFG-G 249 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~---------~~~~~~~~~-~ 249 (475)
.+++++.|+.|++||+.+++....+. ...|.++.|+|+ +++|+.|++|++|+.. +++.+..+. +
T Consensus 50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 57777889999999999998877765 356778888888 9999999999999665 455455554 7
Q ss_pred CCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCccEEEe-cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011916 250 HQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDYICKL-AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 250 h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
|...|.+++|+ +++|++|+.||+|++||++. +...... ..|...|.+++|+|++.+|++|+.||.|++||++++
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~ 202 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED-DSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP 202 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSS-SCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC-CcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 77899999995 47999999999999999984 4444444 445668999999999999999999999999999999
Q ss_pred cee-EEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC----CCCe--eEEEEcCCCCeEEEE
Q 011916 325 QPT-LRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT----GSQV--CNLAWSKNVNELVST 396 (475)
Q Consensus 325 ~~~-~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~----~~~v--~~l~~s~~~~~l~~~ 396 (475)
+.+ ..+.. |...|.+++|+|++.+|++++ |+.|++||+++++.+..+.. ...+ .+++|+|++++|++
T Consensus 203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~----~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~- 277 (343)
T 3lrv_A 203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC----DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA- 277 (343)
T ss_dssp TSCCEECCCCTTSCEEEEEECTTSSEEEEEE----SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEE-
T ss_pred CCCccEEeccCCCCEEEEEEeCCCCEEEEEe----CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEE-
Confidence 887 78888 999999999999998655543 44999999999887655432 2233 36999999999998
Q ss_pred EecC-CCeEEEEECCCCceEEEecCCCcceEEEEECC---CCCEEEEEeCCCCEEEEecC
Q 011916 397 HGYS-QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP---DGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 397 ~g~~-dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~l~s~s~Dg~I~iW~~~ 452 (475)
+.. ++.|++|++......... ..+..++|.+ ++..|++++.||.+.++-..
T Consensus 278 -~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 278 -YSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp -EETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred -ecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 555 999999999766544333 5677888988 88899999999999887543
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=257.99 Aligned_cols=276 Identities=15% Similarity=0.228 Sum_probs=220.6
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEec-------------CCCC
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKRVRTFG-------------GHQT 252 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~~~~~-------------~h~~ 252 (475)
++.+++|+...++...... +|.+.|++++|+| ++++|++|+.||.|++||+.+++....+. +|..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVER-IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECC-CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeee-ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 3456777777777666665 7999999999999 99999999999999999999876655443 5999
Q ss_pred ceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcC---CCCEEEEEeCCCcEEEEECCCCce
Q 011916 253 RAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH---DDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 253 ~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~---~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
.|.+++|+ +.+|++++.||.|++||++ .......+. +...+.++.|++ ++.++++++.|+.|++||+++++.
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTN-TLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC 178 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETT-TTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCC-CCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce
Confidence 99999995 4699999999999999998 455555444 778899999998 445999999999999999999999
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-eeeee----------------cCCCCeeEEEEcCC
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-QLNSV----------------DTGSQVCNLAWSKN 389 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-~~~~~----------------~~~~~v~~l~~s~~ 389 (475)
+..+..|...|.+++|+|++.+++++++ .|+.|++||++++. ++..+ .+...|.+++|+|+
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATAS--ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEE--TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEc--CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 9999999999999999999998777766 89999999998765 33322 35678999999999
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceEEEecCCC-----cceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc-cC
Q 011916 390 VNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS-----LRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV-KD 463 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-----~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~ 463 (475)
+++|++ ++.||.|++||+.+++....+..+. ..+........+..+++++.|+.|++||+..+.....+. +.
T Consensus 257 ~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 334 (408)
T 4a11_B 257 GLHLLT--VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHY 334 (408)
T ss_dssp SSEEEE--EETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCS
T ss_pred CCEEEE--ecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCC
Confidence 999998 8899999999999887665444321 122222223345567777889999999999887665544 33
Q ss_pred Cccccc
Q 011916 464 TSLWSL 469 (475)
Q Consensus 464 ~~v~s~ 469 (475)
..+.++
T Consensus 335 ~~v~~~ 340 (408)
T 4a11_B 335 KTVDCC 340 (408)
T ss_dssp SCEEEE
T ss_pred CeEEEE
Confidence 444433
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=263.53 Aligned_cols=253 Identities=9% Similarity=0.066 Sum_probs=203.1
Q ss_pred CceeEEecCCC-CEEEE-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 169 FYLNLVDWSSQ-NVLAV-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
-.+.+++|+|| .++|. +.|++|+ |...++.+ . +|...|.+++|+|+| .++.+.+|+ ++....
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l---~-gh~~~v~~V~FsPdg-------~~~~~~~~~---~~~~~~ 79 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI---N-CNSKNLFHVKEFPLE-------FENKLDFEL---AQQNGL 79 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC---S-SBGGGTEEEEEECCC-------CCCTTTTSC---CCSSCS
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--ccccccee---c-CCCccEEEEEECCCC-------CcceEEEEe---CCCceE
Confidence 46788999998 45555 4588888 75555432 3 889999999999999 455555554 333333
Q ss_pred ec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccC-----CEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 247 FG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS-----EVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 247 ~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-----~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
+. .|...|.+++| +|..|++++.||.|++||... .+..+. |.. .|.+++|||||++||+|+.||+|+|
T Consensus 80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkI 155 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQF 155 (588)
T ss_dssp STTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEE
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEE
Confidence 33 56889999999 478999999999999999642 555566 665 5999999999999999999999999
Q ss_pred EECCCCce-------eEEE----eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee---eee--cCCCCee
Q 011916 319 WNQHSQQP-------TLRL----TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL---NSV--DTGSQVC 382 (475)
Q Consensus 319 wd~~~~~~-------~~~~----~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~---~~~--~~~~~v~ 382 (475)
||+..+.. +.++ .+|...|.+++|+|+| +++++ .|+.|++||+.++... ..+ .+...|.
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass---~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~ 230 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL---SNNSVFSMTVSASSHQPVSRMIQNASRRKIT 230 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE---TTCCEEEECCCSSSSCCCEEEEECCCSSCCC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe---CCCeEEEEECCCCccccceeeecccccCcEE
Confidence 99998753 5666 5677899999999999 55544 6999999999887743 344 3557899
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEE--CCCCCEEEEEeCCCCEEEEecC
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT--SPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+++|+ ++.|++ ++ ++.|++||+.+++......+|...|..++| +||+..|+++++||+ ++|.++
T Consensus 231 svaFs--g~~LAS--a~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 231 DLKIV--DYKVVL--TC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CEEEE--TTEEEE--EC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEE--CCEEEE--Ee-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999 678887 43 699999999988775555589999999999 999999999999999 999986
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-28 Score=236.74 Aligned_cols=283 Identities=13% Similarity=0.079 Sum_probs=198.9
Q ss_pred cCCCCCCCCceeEEecCCC----CEEEEEcCCeEEEEECCCC---cEEEEeeCCCCCcEEEEEEcCCCC-EEEEEeCCCe
Q 011916 161 DAPSLQDDFYLNLVDWSSQ----NVLAVGLGTCVYLWTASNS---KVTRLCDLGPGDSVCSVQWTREGS-YISVGTNLGQ 232 (475)
Q Consensus 161 ~~p~~~~d~~v~~l~ws~~----~~la~~~~~~V~lw~~~~~---~~~~~~~~~~~~~V~~v~~spdg~-~la~g~~dg~ 232 (475)
..|.-.-...+.++-|-.. -.+.++....|.+|+..++ +....+. .|..+|..|.+.||.. ++.++-.+=.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~ 110 (356)
T 2w18_A 32 KNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWH-FAEVPVLQIVPVPDVYNLVCVALGNLE 110 (356)
T ss_dssp CCCCSSCEEEEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEE-CCSSCEEEECCCTTCCSCEEEEECSSS
T ss_pred cCCCCCeEEEEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEe-ccCceeEEEEEcCcccceeeeeecccc
Confidence 3443334455788888753 2677788999999999998 6666665 5666777777777543 2222222111
Q ss_pred E-EEEEC--CCC----eeeEEecCCCCceEEEEeCCCEEEEEe--CCCcEEEEECCCCCccEEEecCccCCEEEEEEcC-
Q 011916 233 V-QVWDG--TQC----KRVRTFGGHQTRAGVLAWNSRILSSGS--RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSH- 302 (475)
Q Consensus 233 v-~iwd~--~~~----~~~~~~~~h~~~v~~l~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~- 302 (475)
+ .|+-+ ... .....-.+|...|..+ -+++++.+++ .|+.|++|++...++.+..+.+|...+..++|++
T Consensus 111 ~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~ 189 (356)
T 2w18_A 111 IREIRALFCSSDDESEKQVLLKSGNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV 189 (356)
T ss_dssp EEEEEEECC------CCEEEEEEEEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred ccceEEEEECCCccccccEEEeCCCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence 1 11111 111 1111112344344333 1334444433 5999999999767888888889999999999999
Q ss_pred --CCCEEEEEeCCCcEEEEECCCCceeEEEeccc---cceeEEEECCCCCcEE-----------EEecCCCCCeEEEEEC
Q 011916 303 --DDRELASGGNDNQLLVWNQHSQQPTLRLTEHT---AAVKAIAWSPHQSSLL-----------ASGGGTADRCIRFWNT 366 (475)
Q Consensus 303 --~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~---~~v~~l~~sp~~~~ll-----------~sg~Gs~d~~I~iwd~ 366 (475)
++.+||+|+.|++|+|||+++++.+.++.+|. ..+.+++|+|++..++ ++ |+.|++|++||.
T Consensus 190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS--Gs~D~tIklWd~ 267 (356)
T 2w18_A 190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL--RSPVFQLIVINP 267 (356)
T ss_dssp ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC--------------CCEEEEEEET
T ss_pred CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec--cCCCcEEEEEEC
Confidence 77999999999999999999999999998654 4677889999998663 34 448999999999
Q ss_pred CCCceeeeec------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceE-EEEECCCCCEEEE
Q 011916 367 SNGHQLNSVD------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVL-YLATSPDGQTIVT 439 (475)
Q Consensus 367 ~~~~~~~~~~------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~s 439 (475)
.+++.+..+. +...+.+..+ ++..+++ |+.|+.|+|||+.+++.+.++++|...+. .++|+|||++|++
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lAS--gS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAA--ILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEE--EETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred CCCEEEEEEEeeccCCCcceeEcccc--CCCEEEE--EcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence 9998876541 1222333333 3566666 88999999999999999999999988765 5899999999999
Q ss_pred EeCCCCEEEEec
Q 011916 440 GAGDETLRFWNV 451 (475)
Q Consensus 440 ~s~Dg~I~iW~~ 451 (475)
|+.|++|+|||+
T Consensus 344 GS~D~TIklWd~ 355 (356)
T 2w18_A 344 GQKDGNIFVYHY 355 (356)
T ss_dssp ECTTSCEEEEEE
T ss_pred EECCCcEEEecC
Confidence 999999999996
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=247.71 Aligned_cols=250 Identities=10% Similarity=0.059 Sum_probs=185.6
Q ss_pred EEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEE-EEEeCC
Q 011916 192 LWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRIL-SSGSRD 270 (475)
Q Consensus 192 lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l-~sgs~d 270 (475)
||++.+.+.+.... .|...|.+++|+|||++||+|+.+| ++||++.+++.......+...+.++.++++.+ ++|+.|
T Consensus 3 i~s~~~~~~~~~~~-~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 3 LGSMITRNPIVPEN-HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST
T ss_pred cccccccCCccccc-cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc
Confidence 45555555444333 6889999999999999999998875 78999998877766554433344444456666 667888
Q ss_pred CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcE
Q 011916 271 RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSL 349 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~l 349 (475)
++|++||+. .+..+..+. |...|.+++|+++. ++++. |+.|++||+.++ +.+..+.. ....+++++ ..+
T Consensus 81 ~~v~iWd~~-~~~~~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l 150 (355)
T 3vu4_A 81 EVVHIWDDV-KKQDVSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL 150 (355)
T ss_dssp TEEEEEETT-TTEEEEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred cEEEEEECC-CCcEEEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence 999999998 556666665 66789999998764 44443 789999999988 66655544 344556666 434
Q ss_pred EEEecCCCCCeEEEEECCCCc----------------eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCe-EEEEECCC
Q 011916 350 LASGGGTADRCIRFWNTSNGH----------------QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQ-IMVWKYPS 411 (475)
Q Consensus 350 l~sg~Gs~d~~I~iwd~~~~~----------------~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~-I~iwd~~~ 411 (475)
+++ +|..||.|++||+.++. ++..+ .|...|.+++|+|++++|++ |+.|+. |++||+.+
T Consensus 151 a~~-sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s--~s~d~~~v~iwd~~~ 227 (355)
T 3vu4_A 151 VYS-NEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT--CSQDGTIIRVFKTED 227 (355)
T ss_dssp EEE-ESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE--EETTCSEEEEEETTT
T ss_pred EEe-CCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE--EeCCCCEEEEEECCC
Confidence 444 23489999999999876 13444 57789999999999999999 889998 99999999
Q ss_pred CceEEEec-C-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 412 MAKVSTLT-G-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 412 ~~~~~~l~-~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
++.+..+. + |...|.+++|+|||++|++++.|++|++||+.....
T Consensus 228 ~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 228 GVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp CCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred CcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 99999998 5 999999999999999999999999999999987643
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=255.92 Aligned_cols=235 Identities=10% Similarity=0.103 Sum_probs=197.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe---eeEEecC-------------------------------------
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK---RVRTFGG------------------------------------- 249 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~---~~~~~~~------------------------------------- 249 (475)
.++.+++|+++|++|+++ .++.|++||+.+++ .+..+..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 467899999999966665 56899999999888 5555543
Q ss_pred -----------------CCCceEEEEeC--CCEE-EEEeCCCcEEEEECCC-CCccEEEec--CccCCEEEEEEcCCCCE
Q 011916 250 -----------------HQTRAGVLAWN--SRIL-SSGSRDRNILQHDLRV-SSDYICKLA--GHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 250 -----------------h~~~v~~l~~~--~~~l-~sgs~dg~I~iwd~~~-~~~~~~~~~--~h~~~V~~l~~s~~~~~ 306 (475)
|...|.+++|+ +.+| ++|+.||.|++||+.. .+..+..+. .|...|++++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 163 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTT 163 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCE
Confidence 33369999995 5675 8999999999999973 344555554 56789999999999999
Q ss_pred EEEEeCCCcEEEEECCCCceeE----EEeccccceeEEEECCC---CCcEEEEecCCCCCeEEEEECCCCceeeee--cC
Q 011916 307 LASGGNDNQLLVWNQHSQQPTL----RLTEHTAAVKAIAWSPH---QSSLLASGGGTADRCIRFWNTSNGHQLNSV--DT 377 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~----~~~~h~~~v~~l~~sp~---~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--~~ 377 (475)
|++|+.||.|++|++.++.... .+.+|...|.+++|+|+ +.+ +++++ .|+.|++||+.+++++..+ .+
T Consensus 164 l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~-l~s~~--~d~~i~vwd~~~~~~~~~~~~~h 240 (450)
T 2vdu_B 164 VIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQF-IITSD--RDEHIKISHYPQCFIVDKWLFGH 240 (450)
T ss_dssp EEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEE-EEEEE--TTSCEEEEEESCTTCEEEECCCC
T ss_pred EEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcE-EEEEc--CCCcEEEEECCCCceeeeeecCC
Confidence 9999999999999998876543 67789999999999999 764 45544 7999999999999888774 47
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC-------------------------CcceEEEEECC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH-------------------------SLRVLYLATSP 432 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-------------------------~~~V~~l~~sp 432 (475)
...|.+++|+ ++++|++ ++.|+.|++||+.+++.+..+..+ ...|..++|+|
T Consensus 241 ~~~v~~~~~s-d~~~l~s--~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 241 KHFVSSICCG-KDYLLLS--AGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp SSCEEEEEEC-STTEEEE--EESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCceEEEEEC-CCCEEEE--EeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 7899999999 9999998 789999999999999988887632 35689999999
Q ss_pred CCCEEEEEe-CCCCEEEEec
Q 011916 433 DGQTIVTGA-GDETLRFWNV 451 (475)
Q Consensus 433 dg~~l~s~s-~Dg~I~iW~~ 451 (475)
++++|++++ .|+.|++|++
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEe
Confidence 999999999 8999999999
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=273.10 Aligned_cols=239 Identities=20% Similarity=0.375 Sum_probs=202.0
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCC--cEEEEeeCCCCCcEEEEEEcCC--CCEEEEEeCCCeEEEEECCC
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNS--KVTRLCDLGPGDSVCSVQWTRE--GSYISVGTNLGQVQVWDGTQ 240 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~--~~~~~~~~~~~~~V~~v~~spd--g~~la~g~~dg~v~iwd~~~ 240 (475)
+.-.|++++|+++ .+++++.||.|+||++.++ +....+. +|.+.|++++|+++ +++|++|+.||.|++||+.+
T Consensus 8 H~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~ 86 (753)
T 3jro_A 8 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN 86 (753)
T ss_dssp CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET
T ss_pred CcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC
Confidence 3456899999986 4777778999999999854 3344443 78999999999987 99999999999999999998
Q ss_pred Ce--eeEEecCCCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCC-ccEEEecCccCCEEEEEEcC-----------
Q 011916 241 CK--RVRTFGGHQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSS-DYICKLAGHKSEVCGLKWSH----------- 302 (475)
Q Consensus 241 ~~--~~~~~~~h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~----------- 302 (475)
++ .+..+.+|...|.+++|+ +++|++|+.||.|++||++... .....+.+|...|.+++|+|
T Consensus 87 ~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~ 166 (753)
T 3jro_A 87 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNG 166 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------
T ss_pred CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccccccc
Confidence 87 777888999999999995 6799999999999999998542 34556788999999999999
Q ss_pred --CCCEEEEEeCCCcEEEEECCCC----ceeEEEeccccceeEEEECCC---CCcEEEEecCCCCCeEEEEECCCCce--
Q 011916 303 --DDRELASGGNDNQLLVWNQHSQ----QPTLRLTEHTAAVKAIAWSPH---QSSLLASGGGTADRCIRFWNTSNGHQ-- 371 (475)
Q Consensus 303 --~~~~lasg~~Dg~I~iwd~~~~----~~~~~~~~h~~~v~~l~~sp~---~~~ll~sg~Gs~d~~I~iwd~~~~~~-- 371 (475)
++.+|++|+.||.|++||++++ .....+.+|...|.+++|+|+ +. ++++++ .|+.|++||+.++..
T Consensus 167 ~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~-~l~s~s--~Dg~I~iwd~~~~~~~~ 243 (753)
T 3jro_A 167 TKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS-YLASVS--QDRTCIIWTQDNEQGPW 243 (753)
T ss_dssp CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE-EEEEEE--SSSCEEEEEESSSSSCC
T ss_pred CCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC-EEEEEe--cCCEEEEecCCCCCCcc
Confidence 5899999999999999999877 455677889999999999999 56 555554 899999999988742
Q ss_pred ----eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 372 ----LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 372 ----~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
.....+...|.+++|+|+++.+++ |+.||.|++|++..
T Consensus 244 ~~~~~~~~~~~~~v~~l~~spdg~~l~s--~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 244 KKTLLKEEKFPDVLWRASWSLSGNVLAL--SGGDNKVTLWKENL 285 (753)
T ss_dssp BCCBSSSSCCSSCCCCEEECTTTCCEEE--ECSSSCEECCBCCS
T ss_pred eeEEeccCCCCCceEEEEEcCCCCEEEE--EcCCCEEEEEecCC
Confidence 222236678999999999999998 88899999999874
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-28 Score=244.05 Aligned_cols=257 Identities=21% Similarity=0.343 Sum_probs=207.4
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-Cee
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ-CKR 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~-~~~ 243 (475)
+..+|++++|+++ . +++++.|+.|+|||+.+++....+. +|...+.+++|+ +.+|++|+.|+.+++||... ...
T Consensus 146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~-~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~ 222 (420)
T 4gga_A 146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMT-SHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHH 222 (420)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEe-CCCCceEEEeeC--CCEEEEEeCCCceeEeeeccccee
Confidence 4557999999997 4 5566679999999999999888776 889999998874 67999999999999999876 456
Q ss_pred eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCC---ccEEEecCccCCEEEEEEcCCC-CEEEEE--eCCCc
Q 011916 244 VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSS---DYICKLAGHKSEVCGLKWSHDD-RELASG--GNDNQ 315 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~s~~~-~~lasg--~~Dg~ 315 (475)
+..+.+|...+..+.| ++.++++++.|+.|++|+..... ..+.....|...|.+++|+|++ ..++++ +.|+.
T Consensus 223 ~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~ 302 (420)
T 4gga_A 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH 302 (420)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE
T ss_pred eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE
Confidence 6788899999999999 46899999999999999997433 2456778899999999999955 466654 57999
Q ss_pred EEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEE
Q 011916 316 LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~ 394 (475)
|++||+.+++.+..+..| ..+.++.|+|++..+++++ |..|+.|++||+.+++++..+. |.+.|.+++|+|+|++|+
T Consensus 303 I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~s-g~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 303 IRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGH-GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp EEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEE-CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred EEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEE-ecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 999999999988887654 5789999999999777665 4689999999999999999885 678999999999999999
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEE
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
+ |+.|+.|+|||+....+....+.+...+....+
T Consensus 381 S--~s~D~tvriWdv~~~~~~~~~~~~~~~~~~~s~ 414 (420)
T 4gga_A 381 S--AAADETLRLWRCFELDPARRREREKASAAKSSL 414 (420)
T ss_dssp E--EETTTEEEEECCSCSSCC---------------
T ss_pred E--EecCCeEEEEECCCCCccchhhhccCCcccccc
Confidence 8 889999999999877666665555544443333
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-29 Score=252.45 Aligned_cols=240 Identities=20% Similarity=0.388 Sum_probs=200.8
Q ss_pred CCCceeEEecCCC--CEEEE-EcCCeEEEEECCC----------CcEEEEeeCCCCCcEEEEEEcCCCC-EEEEEeCCCe
Q 011916 167 DDFYLNLVDWSSQ--NVLAV-GLGTCVYLWTASN----------SKVTRLCDLGPGDSVCSVQWTREGS-YISVGTNLGQ 232 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~-~~~~~V~lw~~~~----------~~~~~~~~~~~~~~V~~v~~spdg~-~la~g~~dg~ 232 (475)
+...+++++|+++ .++++ +.++.|++|++.+ ......+. +|...|++++|+|++. +|++|+.||.
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~ 205 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASDDHT 205 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEECTTSC
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeCCCe
Confidence 3456888999986 45555 4589999999986 34444443 7889999999999988 9999999999
Q ss_pred EEEEECCCCee-------eEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCC--ccEEEecCccCCEEEEEE
Q 011916 233 VQVWDGTQCKR-------VRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSS--DYICKLAGHKSEVCGLKW 300 (475)
Q Consensus 233 v~iwd~~~~~~-------~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~ 300 (475)
|++|++.++.. ...+.+|...|.+++|+ +.+|++++.||.|++||++... ..+..+..|...|.+++|
T Consensus 206 i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~ 285 (430)
T 2xyi_A 206 ICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285 (430)
T ss_dssp EEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEE
T ss_pred EEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEe
Confidence 99999987322 45677899999999995 4799999999999999998542 566777899999999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEECCC-CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC----------
Q 011916 301 SHDDR-ELASGGNDNQLLVWNQHS-QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN---------- 368 (475)
Q Consensus 301 s~~~~-~lasg~~Dg~I~iwd~~~-~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~---------- 368 (475)
+|++. +|++|+.||.|++||++. ..++..+..|...|.+++|+|++..++++++ .|+.|++||+..
T Consensus 286 ~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~ 363 (430)
T 2xyi_A 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG--TDRRLHVWDLSKIGEEQSTEDA 363 (430)
T ss_dssp CSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEE--TTSCCEEEEGGGTTCCCCHHHH
T ss_pred CCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCccccCcccc
Confidence 99887 799999999999999997 5678889999999999999999988888876 899999999987
Q ss_pred ----Cceeeee-cCCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCC
Q 011916 369 ----GHQLNSV-DTGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 369 ----~~~~~~~-~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~ 411 (475)
.+.+..+ .+...|.+++|+|+++ .+++ +..||.|+||++..
T Consensus 364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s--~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICS--VSEDNIMQVWQMAE 410 (430)
T ss_dssp HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE--EETTSEEEEEEECH
T ss_pred ccCCcceEEEcCCCCCCceEEEECCCCCCEEEE--EECCCCEEEeEccc
Confidence 2444444 3567899999999999 5555 67899999999864
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=247.04 Aligned_cols=270 Identities=9% Similarity=0.039 Sum_probs=220.9
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-----EecCCCCceEEEEe--CC
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR-----TFGGHQTRAGVLAW--NS 261 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~-----~~~~h~~~v~~l~~--~~ 261 (475)
.|+.||..++....+..+.....+.+++|+|++.++++++.++.|++||+.+++.+. .+.+|...|.+++| ++
T Consensus 102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~ 181 (433)
T 3bws_A 102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHN 181 (433)
T ss_dssp CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGT
T ss_pred EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCC
Confidence 556666655643333333334567799999977788888888999999999998887 44588999999999 56
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeEEEeccccceeEE
Q 011916 262 RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS-GGNDNQLLVWNQHSQQPTLRLTEHTAAVKAI 340 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las-g~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l 340 (475)
.++++++.|+.|++||++ ....+..+..|...+.+++|+|+++.+++ ++.|+.|++||+++++.+..+.. ...+.++
T Consensus 182 ~~~~s~~~d~~v~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~ 259 (433)
T 3bws_A 182 ELWVSQMQANAVHVFDLK-TLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGL 259 (433)
T ss_dssp EEEEEEGGGTEEEEEETT-TCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEE
T ss_pred EEEEEECCCCEEEEEECC-CceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEE
Confidence 899999999999999998 56677778889999999999999998855 44799999999999988777665 4568999
Q ss_pred EECCCCCcEEEEecCC-----CCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE
Q 011916 341 AWSPHQSSLLASGGGT-----ADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKV 415 (475)
Q Consensus 341 ~~sp~~~~ll~sg~Gs-----~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~ 415 (475)
+|+|+++.+++++.+. .|+.|++||+.+++.+..+.+...+..++|+|+++.++++ +..++.|++||+.+++.+
T Consensus 260 ~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~-~~~~~~v~v~d~~~~~~~ 338 (433)
T 3bws_A 260 LLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVS-DMCCSKIEVYDLKEKKVQ 338 (433)
T ss_dssp EECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEE-ETTTTEEEEEETTTTEEE
T ss_pred EEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEE-ecCCCEEEEEECCCCcEE
Confidence 9999999777765211 3889999999999988888777789999999999887664 678999999999999888
Q ss_pred EEecCCCcceEEEEECCCCCEEEEEeC---------------CCCEEEEecCCCCCCCCccc
Q 011916 416 STLTGHSLRVLYLATSPDGQTIVTGAG---------------DETLRFWNVFPSLKAPALVK 462 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~spdg~~l~s~s~---------------Dg~I~iW~~~~~~~~~~~~~ 462 (475)
..+. +...+.+++|+|+|++|++++. ||.|++||+..+........
T Consensus 339 ~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~ 399 (433)
T 3bws_A 339 KSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA 399 (433)
T ss_dssp EEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred EEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence 8776 6778999999999999988876 57999999988765554433
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=247.53 Aligned_cols=233 Identities=8% Similarity=0.032 Sum_probs=188.0
Q ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCC--------CCccE-E
Q 011916 216 QWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRV--------SSDYI-C 286 (475)
Q Consensus 216 ~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~--------~~~~~-~ 286 (475)
.+.+++.+|++|+.||.|++||+.+++.+..+. ...|.++.|++. +++++.|++|++|+... ....+ .
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~ 119 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLRE 119 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEE
Confidence 345678899999999999999999998888876 456777778777 99999999999997652 12222 2
Q ss_pred EecCccCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 287 KLAGHKSEVCGLKWSH--DDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~--~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
....|...|.+++|+| ++++|++|+.||.|++||+++++.+..... |...|.+++|+|++. ++++|+ .|+.|++
T Consensus 120 ~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~--~dg~i~i 196 (343)
T 3lrv_A 120 IEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYS--PDGILDV 196 (343)
T ss_dssp EECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEEC--TTSCEEE
T ss_pred eecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEc--CCCEEEE
Confidence 3346778999999999 999999999999999999999988766643 556899999999998 556654 8999999
Q ss_pred EECCCCcee-eeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC---CCcceE--EEEECCCCC
Q 011916 364 WNTSNGHQL-NSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG---HSLRVL--YLATSPDGQ 435 (475)
Q Consensus 364 wd~~~~~~~-~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---h~~~V~--~l~~spdg~ 435 (475)
||+++++.+ ..+. |...|.+++|+|++.+|++ ++ ++.|++||+++.+.+..+.. |...+. +++|+|+|+
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s--~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 273 (343)
T 3lrv_A 197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV--EC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGK 273 (343)
T ss_dssp EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE--EE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSS
T ss_pred EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE--Ee-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCC
Confidence 999999887 5554 5789999999999999998 55 45999999998876655443 444444 699999999
Q ss_pred EEEEEeC-CCCEEEEecCCCCCC
Q 011916 436 TIVTGAG-DETLRFWNVFPSLKA 457 (475)
Q Consensus 436 ~l~s~s~-Dg~I~iW~~~~~~~~ 457 (475)
+|++++. |+.|++|++....+.
T Consensus 274 ~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 274 NMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTTCS
T ss_pred EEEEecCCCCcEEEEEEcccccc
Confidence 9999998 999999999766543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=248.46 Aligned_cols=238 Identities=12% Similarity=0.069 Sum_probs=187.3
Q ss_pred CCceeEEecCCCCEEEEE-----------cCCeEEEEECCCCcE-EEE---eeC----CCCCcEEEEEEcCCCCEEEEEe
Q 011916 168 DFYLNLVDWSSQNVLAVG-----------LGTCVYLWTASNSKV-TRL---CDL----GPGDSVCSVQWTREGSYISVGT 228 (475)
Q Consensus 168 d~~v~~l~ws~~~~la~~-----------~~~~V~lw~~~~~~~-~~~---~~~----~~~~~V~~v~~spdg~~la~g~ 228 (475)
+..+.+++++++.+++++ .++.+++|++..... ... ... .+...+.+++|+|||++||+++
T Consensus 73 ~~~v~s~~~~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as 152 (365)
T 4h5i_A 73 DDSPTAIDASKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIAS 152 (365)
T ss_dssp SCCCCEEEEETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEE
T ss_pred CCceEEEEeCCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEE
Confidence 335677888776666553 356799998765432 111 111 3446799999999999987665
Q ss_pred --CCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccE-EEecCccCCEEEEEEcCC
Q 011916 229 --NLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYI-CKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 229 --~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~s~~ 303 (475)
.|++|+|||+.+++++..+. |...|.+++|+ +.+|++++.++ +.+|+........ .....|...|.+++|+|+
T Consensus 153 ~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd 230 (365)
T 4h5i_A 153 SKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFDKNWSLSKINFIAD 230 (365)
T ss_dssp SCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCCTTEEEEEEEEEET
T ss_pred CCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCCCCCCEEEEEEcCC
Confidence 68999999999999998886 77889999994 68888888554 5566655344333 345678889999999999
Q ss_pred CCEEEEEeCCC----cEEEEECCCCce----eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 304 DRELASGGNDN----QLLVWNQHSQQP----TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 304 ~~~lasg~~Dg----~I~iwd~~~~~~----~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
++++++++.|+ .+++|++..... ...+.+|...|.+++|+|+|+ ++++|+ .|+.|+|||+.+++++..+
T Consensus 231 g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~-~lasgs--~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 231 DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE-LAVLAS--NDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC-EEEEEE--TTSCEEEEETTTTEEEEEE
T ss_pred CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC-ceEEEc--CCCEEEEEECCCCcEEEEe
Confidence 99999999887 688899876643 345678999999999999999 455554 8999999999999999886
Q ss_pred --cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011916 376 --DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 376 --~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
.|...|++++|+|+|++|++ |+.|++|+|||++..
T Consensus 308 ~~gH~~~V~~v~fSpdg~~laS--~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 308 KQAHSFAITEVTISPDSTYVAS--VSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSSSSCEEEEEECTTSCEEEE--EETTSEEEEEECCTT
T ss_pred cCcccCCEEEEEECCCCCEEEE--EeCCCeEEEEEcCCC
Confidence 37789999999999999999 889999999999743
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-29 Score=252.07 Aligned_cols=253 Identities=13% Similarity=0.116 Sum_probs=199.2
Q ss_pred CCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 167 DDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 167 ~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.-.+.+++|+|+. .+.+|++.+++....+.+.+...|.+++|+|+|++||+++.||.|+|||.+. ++..
T Consensus 51 h~~~v~~V~FsPdg--------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~ 120 (588)
T 2j04_A 51 NSKNLFHVKEFPLE--------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTN 120 (588)
T ss_dssp BGGGTEEEEEECCC--------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEE
T ss_pred CCccEEEEEECCCC--------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeee
Confidence 44567788888876 4445555544433455556688999999999999999999999999999654 6666
Q ss_pred ecCCCC-----ceEEEEe--CCCEEEEEeCCCcEEEEECCCCCc------cEEEe----cCccCCEEEEEEcCCCCEEEE
Q 011916 247 FGGHQT-----RAGVLAW--NSRILSSGSRDRNILQHDLRVSSD------YICKL----AGHKSEVCGLKWSHDDRELAS 309 (475)
Q Consensus 247 ~~~h~~-----~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~------~~~~~----~~h~~~V~~l~~s~~~~~las 309 (475)
+. |.. .|.+++| +|++|++|+.||+|++||+..... .+..+ .+|...|.+++|+||| +++
T Consensus 121 l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laa 197 (588)
T 2j04_A 121 LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVA 197 (588)
T ss_dssp CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEE
T ss_pred cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEE
Confidence 77 665 5999999 579999999999999999985321 24565 6788899999999999 888
Q ss_pred EeCCCcEEEEECCCCce---eEEE-eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-eeeecCCCCeeEE
Q 011916 310 GGNDNQLLVWNQHSQQP---TLRL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LNSVDTGSQVCNL 384 (475)
Q Consensus 310 g~~Dg~I~iwd~~~~~~---~~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~~~~~~~~v~~l 384 (475)
++.|+.|++||+..+.. ..++ ..|...|.+++|+ +. .+++++ ++.|++||+.+++. .....+.+.+..+
T Consensus 198 ss~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~-~LASa~---~~tIkLWd~~~~~~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 198 ALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY-KVVLTC---PGYVHKIDLKNYSISSLKTGSLENFHII 271 (588)
T ss_dssp EETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT-EEEEEC---SSEEEEEETTTTEEEEEECSCCSCCCEE
T ss_pred EeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC-EEEEEe---CCeEEEEECCCCeEEEEEcCCCceEEEE
Confidence 99999999999988773 3456 3788999999999 45 555553 69999999999888 5555788999999
Q ss_pred EE--cCCCCeEEEEEecCCCeEEEEECCCC-----------------------ceEEEecCCCcceEEEEECCCCCEEEE
Q 011916 385 AW--SKNVNELVSTHGYSQNQIMVWKYPSM-----------------------AKVSTLTGHSLRVLYLATSPDGQTIVT 439 (475)
Q Consensus 385 ~~--s~~~~~l~~~~g~~dg~I~iwd~~~~-----------------------~~~~~l~~h~~~V~~l~~spdg~~l~s 439 (475)
.| +|++..+++ ++.+|. ++|..... ..+..+. +...|.+++|||||+.+|+
T Consensus 272 a~~~s~d~~~La~--a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 272 PLNHEKESTILLM--SNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp EETTCSSCEEEEE--CSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEE
T ss_pred EeeeCCCCCEEEE--EcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEE
Confidence 99 999999888 888999 99987421 1111222 2456999999999999998
Q ss_pred EeC
Q 011916 440 GAG 442 (475)
Q Consensus 440 ~s~ 442 (475)
++.
T Consensus 348 ~~~ 350 (588)
T 2j04_A 348 VYD 350 (588)
T ss_dssp EEE
T ss_pred EEe
Confidence 864
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-26 Score=229.45 Aligned_cols=280 Identities=13% Similarity=0.078 Sum_probs=223.5
Q ss_pred ceeEEecCCC-C-EEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQ-N-VLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~~~ 245 (475)
.+.+++|+++ . +++++ .++.|++||..+++....+.. ...+.+++|+|++++|++++ .++.|++||+.+++.+.
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~ 110 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG 110 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC--CCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence 3688999987 3 43444 689999999999998887753 34899999999999886555 56999999999999988
Q ss_pred EecCCCCceEEEEeC--CCEE-EEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEE-EEEeCCCcEEEEEC
Q 011916 246 TFGGHQTRAGVLAWN--SRIL-SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL-ASGGNDNQLLVWNQ 321 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-asg~~Dg~I~iwd~ 321 (475)
.+..+ ..+.+++|+ ++.| ++++.|+.|++||+. .++.+..+..+ ..+.+++|+|++++| ++++.|+.|++||+
T Consensus 111 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~ 187 (391)
T 1l0q_A 111 TVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (391)
T ss_dssp EEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred EEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 88755 467899995 5555 788889999999998 55666666655 457999999999987 57778899999999
Q ss_pred CCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 322 HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 322 ~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
++++.+..+. +...+.+++|+|++..+++++.+..++.|++||+.+++.+..+..+..+.+++|+|+++.++++ +..+
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s-~~~d 265 (391)
T 1l0q_A 188 VTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA-LSFX 265 (391)
T ss_dssp TTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE-ETTT
T ss_pred CCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEE-cCCC
Confidence 9998777665 5668899999999998887653225899999999999999988888889999999999988654 6789
Q ss_pred CeEEEEECCCCceEEEecCCCcceE---EEEECCCC----------------------CEEEEEeCCCCEEEEecCCCCC
Q 011916 402 NQIMVWKYPSMAKVSTLTGHSLRVL---YLATSPDG----------------------QTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 402 g~I~iwd~~~~~~~~~l~~h~~~V~---~l~~spdg----------------------~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+.|++||+.+++.+..+..|..+.. .+.+.|++ ..+...+.|.++++|++..+..
T Consensus 266 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~ 345 (391)
T 1l0q_A 266 NTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSS 345 (391)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCE
T ss_pred CEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcc
Confidence 9999999999999988877655421 12222211 2455666788999999977653
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-26 Score=221.74 Aligned_cols=251 Identities=19% Similarity=0.364 Sum_probs=206.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec--CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG--GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~--~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
...+|+||+++ +||+|. |++|+|||+.+++++..+. +|...|.+++|+ +++|++|+.||+|++||++ .++.+.
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~-~~~~~~ 103 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ-QQKRLR 103 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEE
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecC-CceeEE
Confidence 45789999876 777775 8999999999999888765 677889999994 6899999999999999998 677888
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ-QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
.+.+|...+.++.+ ++..+++++.++.+++|+.... ..+..+.+|...+..++|++++..+++ ++ .|+.|++||
T Consensus 104 ~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-~~--~d~~i~iwd 178 (318)
T 4ggc_A 104 NMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS-GG--NDNLVNVWP 178 (318)
T ss_dssp EEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEE-EE--TTSCEEEEE
T ss_pred EecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEE-Ee--cCcceeEEE
Confidence 89999999887665 5679999999999999999865 455677889999999999999996555 43 799999999
Q ss_pred CCCCceee-----eecCCCCeeEEEEcCCCCeEE-EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEE
Q 011916 366 TSNGHQLN-----SVDTGSQVCNLAWSKNVNELV-STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVT 439 (475)
Q Consensus 366 ~~~~~~~~-----~~~~~~~v~~l~~s~~~~~l~-~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s 439 (475)
+.+++... ...+...|..+.+++++..++ ++.+..++.|++||........... +...+..+.|++++..+++
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 179 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp SSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTEEEE
T ss_pred CCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccceEE
Confidence 99876432 224667899999999877655 3457788999999999888776654 6678999999999998887
Q ss_pred Ee--CCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 440 GA--GDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 440 ~s--~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
++ .|+.|++||+.++.....+. |...|+++.
T Consensus 258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~ 291 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLT 291 (318)
T ss_dssp EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 65 79999999999887766654 455565544
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-27 Score=237.07 Aligned_cols=291 Identities=14% Similarity=0.070 Sum_probs=222.0
Q ss_pred eeEEecCCC--CEE-EEE----cCC----eEEEEEC--CCCcEEEE--eeCCCCCcEEEEEEcC--------------CC
Q 011916 171 LNLVDWSSQ--NVL-AVG----LGT----CVYLWTA--SNSKVTRL--CDLGPGDSVCSVQWTR--------------EG 221 (475)
Q Consensus 171 v~~l~ws~~--~~l-a~~----~~~----~V~lw~~--~~~~~~~~--~~~~~~~~V~~v~~sp--------------dg 221 (475)
++..+|++. .++ +++ .+| .|+|||+ .+++.+.. +. +|...+..+++.+ .+
T Consensus 65 ~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~~~ 143 (415)
T 2hqs_A 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGAFR 143 (415)
T ss_dssp CCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred cCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence 455788775 344 443 256 8999999 88886532 32 5666677776664 25
Q ss_pred CEEEEEeCC------CeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCC---cEEEEECCCCCccEEEecC
Q 011916 222 SYISVGTNL------GQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDR---NILQHDLRVSSDYICKLAG 290 (475)
Q Consensus 222 ~~la~g~~d------g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~ 290 (475)
..++.++.+ +.|++||+. +...+.+.+|...+.+++|+ ++.|++++.++ .|++||+.. ++. ..+..
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t-g~~-~~l~~ 220 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-GAV-RQVAS 220 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-CCE-EEEEC
T ss_pred CEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC-CcE-EEeec
Confidence 667766654 799999987 45567788899999999994 68999999875 999999984 333 45677
Q ss_pred ccCCEEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC--eEEEEE
Q 011916 291 HKSEVCGLKWSHDDRELA-SGGNDNQ--LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR--CIRFWN 365 (475)
Q Consensus 291 h~~~V~~l~~s~~~~~la-sg~~Dg~--I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd 365 (475)
|...+.+++|+|||++|+ +++.|+. |++||+.+++. ..+..|...+.+++|+|+|+.|++++. .++ .|++||
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~--~~g~~~i~~~d 297 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSD--QAGRPQVYKVN 297 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEEC--TTSSCEEEEEE
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEEC--CCCCcEEEEEE
Confidence 888999999999999888 6666554 99999998765 567778889999999999998887763 344 788889
Q ss_pred CCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCC
Q 011916 366 TSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 366 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
+.+++......+...+..++|+|+|++|+++... .+..|++||+.+++. ..+..|. .+.+++|+|||++|++++.|+
T Consensus 298 ~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~ 375 (415)
T 2hqs_A 298 INGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAPNGTMVIYSSSQG 375 (415)
T ss_dssp TTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECTTSSEEEEEEEET
T ss_pred CCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcCCCCEEEEEEcCC
Confidence 9988765544566778899999999999885321 135899999998876 4566664 899999999999999988877
Q ss_pred ---CEEEEecCCCCCCCCcccCCcccccc
Q 011916 445 ---TLRFWNVFPSLKAPALVKDTSLWSLG 470 (475)
Q Consensus 445 ---~I~iW~~~~~~~~~~~~~~~~v~s~~ 470 (475)
.|++||+..+.......+.+.++++.
T Consensus 376 ~~~~l~~~d~~g~~~~~l~~~~~~v~~~~ 404 (415)
T 2hqs_A 376 MGSVLNLVSTDGRFKARLPATDGQVKFPA 404 (415)
T ss_dssp TEEEEEEEETTSCCEEECCCSSSEEEEEE
T ss_pred CccEEEEEECCCCcEEEeeCCCCCCcCCc
Confidence 79999998665544444555665544
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=234.52 Aligned_cols=225 Identities=13% Similarity=0.176 Sum_probs=166.4
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEee----CCCCCcEEEEEEcC--------CCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCD----LGPGDSVCSVQWTR--------EGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~----~~~~~~V~~v~~sp--------dg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+++++.|++|+|||..+++...... .+|.+.|.+|+|+| ||++||+|+.|++|+|||+.++..+..+.
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~ 183 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY 183 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec
Confidence 5566679999999999987654322 27999999999998 88999999999999999999998888888
Q ss_pred CCCCceEEEEeCC---CEEEEEeCCCcEEEEECCCCCccE------------------------EEecCccCCEEEEEEc
Q 011916 249 GHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYI------------------------CKLAGHKSEVCGLKWS 301 (475)
Q Consensus 249 ~h~~~v~~l~~~~---~~l~sgs~dg~I~iwd~~~~~~~~------------------------~~~~~h~~~V~~l~~s 301 (475)
.|...|.+++|++ .+|++|+.|++|++||++...... ....+|...|.++.|+
T Consensus 184 ~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~ 263 (393)
T 4gq1_A 184 PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI 263 (393)
T ss_dssp ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEE
T ss_pred CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeee
Confidence 9999999999964 589999999999999998543211 1124677888999987
Q ss_pred -CCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEE------------------C-CCCCcEEEEecCCCCCeE
Q 011916 302 -HDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAW------------------S-PHQSSLLASGGGTADRCI 361 (475)
Q Consensus 302 -~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~------------------s-p~~~~ll~sg~Gs~d~~I 361 (475)
++++.|++++.|+.+++||+..++....+..|...+..+.+ + +.+..++++|+ .|+.|
T Consensus 264 ~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs--~Dg~V 341 (393)
T 4gq1_A 264 GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHS--QHGLI 341 (393)
T ss_dssp TTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEET--TTTEE
T ss_pred cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEEC--CCCEE
Confidence 79999999999999999999887666555555444433333 3 33444666655 89999
Q ss_pred EEEECCCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 362 RFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 362 ~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
++||+.+++++... .+...|.+++|+|+|++|++ ++ ++.+.+|.+.
T Consensus 342 ~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~--as-~~Gv~lvrL~ 388 (393)
T 4gq1_A 342 QLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAI--AT-EGSVLLTRLM 388 (393)
T ss_dssp EEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEE--EE-SSEEEEEEEG
T ss_pred EEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEE--Ee-CCCeEEEEEe
Confidence 99999998877654 57789999999999999998 54 4557666653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-24 Score=209.32 Aligned_cols=267 Identities=11% Similarity=0.097 Sum_probs=204.3
Q ss_pred EEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCee-eEEecCCCCceEEEEe
Q 011916 182 LAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKR-VRTFGGHQTRAGVLAW 259 (475)
Q Consensus 182 la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~-~~~~~~h~~~v~~l~~ 259 (475)
++.+.++.|.+||..+++.......+ ...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..+.....+++|
T Consensus 14 v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 91 (331)
T 3u4y_A 14 VVEQHLRRISFFSTDTLEILNQITLG-YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDI 91 (331)
T ss_dssp EEEGGGTEEEEEETTTCCEEEEEECC-CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEE
T ss_pred EEecCCCeEEEEeCcccceeeeEEcc-CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEE
Confidence 33445889999999999998887643 4556 9999999997777666 88999999999987 7777767666665787
Q ss_pred --CCCEEEEEeCCC---cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE-eCCCc-EEEEECCCCceeE----
Q 011916 260 --NSRILSSGSRDR---NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG-GNDNQ-LLVWNQHSQQPTL---- 328 (475)
Q Consensus 260 --~~~~l~sgs~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg-~~Dg~-I~iwd~~~~~~~~---- 328 (475)
++++|+++..++ .|.+||+. .++.+..+.. .....+++|+|+|++|+++ ..++. |.+|++.....+.
T Consensus 92 s~dg~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~ 169 (331)
T 3u4y_A 92 TPDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ 169 (331)
T ss_dssp CTTSSEEEECCCSSSSCEEEEEETT-TTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred CCCCCEEEEecCCCCcccEEEEECC-CCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC
Confidence 467888555553 89999998 4555555543 4457999999999855554 55688 9999988544331
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce---eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~---~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
........+..++|+|+++++++++. .++.|.+||+.+++. +..+..+..+..++|+|+|++++++ ...++.|.
T Consensus 170 ~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~i~ 246 (331)
T 3u4y_A 170 EFISGGTRPFNITFTPDGNFAFVANL--IGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVL-TESTVDVF 246 (331)
T ss_dssp EEECSSSSEEEEEECTTSSEEEEEET--TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEE-CSSEEEEE
T ss_pred ccccCCCCccceEECCCCCEEEEEeC--CCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEE-EcCCCEEE
Confidence 22234456899999999998888865 789999999999998 8888888889999999999988775 44678899
Q ss_pred EEECCCCce--EEEecCC----Ccc---eEEEEECCCCCEEEEEeC-CCCEEEEecCCCC
Q 011916 406 VWKYPSMAK--VSTLTGH----SLR---VLYLATSPDGQTIVTGAG-DETLRFWNVFPSL 455 (475)
Q Consensus 406 iwd~~~~~~--~~~l~~h----~~~---V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~~~ 455 (475)
+||..+++. +..+..+ ... +..++|+|||++|++++. ++.|.+|++....
T Consensus 247 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 247 NFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp EEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred EEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 999998876 4444322 222 245899999998876655 5699999998654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=225.93 Aligned_cols=274 Identities=13% Similarity=0.139 Sum_probs=218.1
Q ss_pred cCCCC-EEE-EEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC--CCCeeeEEecCCC
Q 011916 176 WSSQN-VLA-VGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG--TQCKRVRTFGGHQ 251 (475)
Q Consensus 176 ws~~~-~la-~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~--~~~~~~~~~~~h~ 251 (475)
+++++ +++ ...++.|.+||..++++...+..++. +.+++|+|||++|++++.|+.|.+||+ .+++.+.++. +.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g 221 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IG 221 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CC
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cC
Confidence 45543 333 34488999999999999888875544 889999999999999999999999999 8888888887 44
Q ss_pred CceEEEEeC------CCEEEEEe-CCCcEEEEECCCCCccEEEecC----------cc-CCEEEEEEcCCCC-EEEEEeC
Q 011916 252 TRAGVLAWN------SRILSSGS-RDRNILQHDLRVSSDYICKLAG----------HK-SEVCGLKWSHDDR-ELASGGN 312 (475)
Q Consensus 252 ~~v~~l~~~------~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~----------h~-~~V~~l~~s~~~~-~lasg~~ 312 (475)
..+..++|+ +++|++++ .+++|.+||.. ..+.+..+.. |. ..+.++.+++++. ++++...
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~ 300 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 300 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc-ccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence 567888874 57888887 58999999997 5566665543 22 3789999999766 5566678
Q ss_pred CCcEEEEECCCCceeE--EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-----CCCeeEEE
Q 011916 313 DNQLLVWNQHSQQPTL--RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-----GSQVCNLA 385 (475)
Q Consensus 313 Dg~I~iwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-----~~~v~~l~ 385 (475)
++.|.+||+.+.+.+. .+ .+...+.+++|+|+++++++++. .+++|.+||+.+++++..+.. .+....+
T Consensus 301 ~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~--~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~- 376 (543)
T 1nir_A 301 TGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF- 376 (543)
T ss_dssp TTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-
T ss_pred CCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEec--CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-
Confidence 8999999998876544 33 35667889999999998888765 789999999999999888763 2223333
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCC-------CceEEEecCCCcceEEEEECCCCCEEEEEe-------CCCCEEEEec
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPS-------MAKVSTLTGHSLRVLYLATSPDGQTIVTGA-------GDETLRFWNV 451 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-------~Dg~I~iW~~ 451 (475)
++|++..++++....++.|.+||+.+ ++.+.++.+|...+..++++|||++|++++ .+++|.+||+
T Consensus 377 ~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~ 456 (543)
T 1nir_A 377 VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDL 456 (543)
T ss_dssp EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEET
T ss_pred CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEEC
Confidence 47875555554233689999999988 899999999999999999999999999987 2779999999
Q ss_pred CCCCCC
Q 011916 452 FPSLKA 457 (475)
Q Consensus 452 ~~~~~~ 457 (475)
.+.+..
T Consensus 457 ~~~~~~ 462 (543)
T 1nir_A 457 KNLDAK 462 (543)
T ss_dssp TCTTSC
T ss_pred CCCCCC
Confidence 988876
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-24 Score=209.39 Aligned_cols=267 Identities=10% Similarity=0.156 Sum_probs=195.4
Q ss_pred EEEE-EcCCeEEEEECC-CCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECC--CCe--eeEEecCCCCc
Q 011916 181 VLAV-GLGTCVYLWTAS-NSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-GQVQVWDGT--QCK--RVRTFGGHQTR 253 (475)
Q Consensus 181 ~la~-~~~~~V~lw~~~-~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-g~v~iwd~~--~~~--~~~~~~~h~~~ 253 (475)
++++ +.++.|++|++. +++........+...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+..+. .
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C
Confidence 3444 458999999985 4444333333567788999999999999998886 999999987 444 344555444 7
Q ss_pred eEEEEeC--CCEEEEEe-CCCcEEEEECCC--CCccEEEecCccCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cce
Q 011916 254 AGVLAWN--SRILSSGS-RDRNILQHDLRV--SSDYICKLAGHKSEVCGLKWSHDDRELASGG-NDNQLLVWNQHS-QQP 326 (475)
Q Consensus 254 v~~l~~~--~~~l~sgs-~dg~I~iwd~~~--~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-~Dg~I~iwd~~~-~~~ 326 (475)
+..++|+ +++|++++ .++.|.+||+.. .......+.. ...+.+++|+|++++|++++ .++.|++||+.+ ++.
T Consensus 86 ~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~ 164 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 164 (343)
T ss_dssp CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence 8888884 56666655 588999999951 1223333443 34588999999999888887 889999999987 544
Q ss_pred eE----EEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC--Cce--eeeec---C----CCCeeEEEEcCCC
Q 011916 327 TL----RLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN--GHQ--LNSVD---T----GSQVCNLAWSKNV 390 (475)
Q Consensus 327 ~~----~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~--~~~--~~~~~---~----~~~v~~l~~s~~~ 390 (475)
.. .+.. ....+..++|+|+++++++++. .++.|.+|++.. ++. ...+. . ...+..++|+|++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~--~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred eeecccccccCCCCCcceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 32 2222 3457889999999998888765 789999999953 433 22221 1 2356689999999
Q ss_pred CeEEEEEecCCCeEEEEECC----CCceEEEecCCCcceEEEEECCCCCEEEEEe-CCCCEEEEecCC
Q 011916 391 NELVSTHGYSQNQIMVWKYP----SMAKVSTLTGHSLRVLYLATSPDGQTIVTGA-GDETLRFWNVFP 453 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~----~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iW~~~~ 453 (475)
++|+++ +..++.|.+||+. ..+.+..+..+.. +..++|+|+|++|++++ .|+.|.+|+++.
T Consensus 243 ~~l~v~-~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 243 RHLYAC-DRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp SEEEEE-ETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred CEEEEE-ecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 988864 5578999999998 3455555655554 88999999999888887 589999997764
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-24 Score=213.74 Aligned_cols=247 Identities=14% Similarity=0.073 Sum_probs=196.4
Q ss_pred CCEEEEEcC------CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeEEecC
Q 011916 179 QNVLAVGLG------TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG---QVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 179 ~~~la~~~~------~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg---~v~iwd~~~~~~~~~~~~ 249 (475)
..++.++.+ +.|++||+.++....+. +|...|.+++|+|||++|++++.++ .|++||+.+++.. .+..
T Consensus 144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~--~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~ 220 (415)
T 2hqs_A 144 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVAS 220 (415)
T ss_dssp CEEEEEEECSSSSCCEEEEEEETTSCSCEEEE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEEC
T ss_pred CEEEEEEecCCCCccceEEEEcCCCCCCEEEe--CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-Eeec
Confidence 356666654 79999999876655444 5778999999999999999999875 9999999988775 5667
Q ss_pred CCCceEEEEeC--CCEEE-EEeCCCc--EEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C--cEEEEEC
Q 011916 250 HQTRAGVLAWN--SRILS-SGSRDRN--ILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N--QLLVWNQ 321 (475)
Q Consensus 250 h~~~v~~l~~~--~~~l~-sgs~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g--~I~iwd~ 321 (475)
|...+.+++|+ ++.|+ +++.++. |.+||+.. + ....+..|...+.+++|+|||++|++++.+ + .|++||+
T Consensus 221 ~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~-~-~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~ 298 (415)
T 2hqs_A 221 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS-G-QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI 298 (415)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT-C-CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC-C-CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence 88899999995 56666 6766665 89999973 3 346778888999999999999999988864 4 6888899
Q ss_pred CCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCC
Q 011916 322 HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQ 401 (475)
Q Consensus 322 ~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~d 401 (475)
.+++. ..+..+...+.+++|+|+|++|++++....+..|++||+.+++......+ ..+..++|+|+|+.|+++ ..+
T Consensus 299 ~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~--s~~ 374 (415)
T 2hqs_A 299 NGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-FLDETPSLAPNGTMVIYS--SSQ 374 (415)
T ss_dssp TSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS-SSCEEEEECTTSSEEEEE--EEE
T ss_pred CCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCC-CCcCCeEEcCCCCEEEEE--EcC
Confidence 88764 45556778899999999999887776411246899999999887543333 489999999999999884 334
Q ss_pred C---eEEEEECCCCceEEEecCCCcceEEEEECCCCC
Q 011916 402 N---QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 402 g---~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
+ .|++||+. +.....+.+|.+.|.+++|+|.-.
T Consensus 375 ~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 375 GMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp TTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCCC
T ss_pred CCccEEEEEECC-CCcEEEeeCCCCCCcCCccccccc
Confidence 4 79999986 566778899999999999999643
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-24 Score=222.36 Aligned_cols=285 Identities=12% Similarity=0.142 Sum_probs=225.0
Q ss_pred eeEEecCCC--CEEEEEcCCeEEEEEC--CCCcEEEEeeCCCCCcEEEEEEcC----CCCEEEEEeC-CCeEEEEECCCC
Q 011916 171 LNLVDWSSQ--NVLAVGLGTCVYLWTA--SNSKVTRLCDLGPGDSVCSVQWTR----EGSYISVGTN-LGQVQVWDGTQC 241 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~~~~V~lw~~--~~~~~~~~~~~~~~~~V~~v~~sp----dg~~la~g~~-dg~v~iwd~~~~ 241 (475)
+..++++|+ .+++++.++.|.+||+ .+++....+. +...+..++|+| ||++|++++. +++|.|||..++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~ 258 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 258 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc
Confidence 677889987 4666677999999999 7888777665 456789999999 9999999985 899999999999
Q ss_pred eeeEEecCC-----------CCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEE
Q 011916 242 KRVRTFGGH-----------QTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 242 ~~~~~~~~h-----------~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 307 (475)
+++..+..+ ...+..+.++ +.++++...++.|.+||+............+...+.++.|+|+|++|
T Consensus 259 ~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l 338 (543)
T 1nir_A 259 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYF 338 (543)
T ss_dssp CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEE
T ss_pred ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEE
Confidence 998887642 2378888884 35777888899999999985433332223456678899999999987
Q ss_pred EEEe-CCCcEEEEECCCCceeEEEec----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-------Cceeeee
Q 011916 308 ASGG-NDNQLLVWNQHSQQPTLRLTE----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-------GHQLNSV 375 (475)
Q Consensus 308 asg~-~Dg~I~iwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-------~~~~~~~ 375 (475)
++++ .+++|.+||..+++.+..+.. |.+....+ ++|++..+++++. ..|++|.+||+.+ ++++..+
T Consensus 339 ~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~-~~d~~V~v~d~~~~~~~~~~~~~v~~l 416 (543)
T 1nir_A 339 MTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSH-LGDGSISLIGTDPKNHPQYAWKKVAEL 416 (543)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEEEEE
T ss_pred EEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEecc-CCCceEEEEEeCCCCCchhcCeEEEEE
Confidence 7655 588999999999998887764 54433333 4787566777752 2489999999998 8899998
Q ss_pred cC-CCCeeEEEEcCCCCeEEEEEec-------CCCeEEEEECCCCceE-EEe--------cCCCcceEEEEECCCCCEEE
Q 011916 376 DT-GSQVCNLAWSKNVNELVSTHGY-------SQNQIMVWKYPSMAKV-STL--------TGHSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 376 ~~-~~~v~~l~~s~~~~~l~~~~g~-------~dg~I~iwd~~~~~~~-~~l--------~~h~~~V~~l~~spdg~~l~ 438 (475)
.. +..+..+.++|++++|++ +. .++.|.+||+.+++.. ..+ ..+..++..+.|+|||+.|+
T Consensus 417 ~~~g~~~~~v~~~pdg~~l~v--~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 417 QGQGGGSLFIKTHPKSSHLYV--DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 494 (543)
T ss_dssp ECSCSCCCCEECCTTCCEEEE--CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEE
T ss_pred EcCCCCceEEEcCCCCCcEEE--ecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEE
Confidence 75 457789999999999999 44 2679999999998877 443 35678899999999999988
Q ss_pred EEe-----CCCCEEEEecCCCCCCCCcc
Q 011916 439 TGA-----GDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 439 s~s-----~Dg~I~iW~~~~~~~~~~~~ 461 (475)
++. .|+.|.|||..+.++...+.
T Consensus 495 ~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 495 FSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEeecCCCCCCeEEEEECCCceEEEeec
Confidence 763 47999999999988766543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.8e-25 Score=207.66 Aligned_cols=253 Identities=11% Similarity=0.092 Sum_probs=195.7
Q ss_pred cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEEecCC-CCceEEEEe--CC
Q 011916 186 LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ-CKRVRTFGGH-QTRAGVLAW--NS 261 (475)
Q Consensus 186 ~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~-~~~~~~~~~h-~~~v~~l~~--~~ 261 (475)
.++.|++||+.+++...+. .|...|.+++|+|+|++|++++ ++.|.+||+.+ ++.......+ ...+.+++| ++
T Consensus 20 ~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 20 MRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCEEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred cceeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 4789999999999887665 4678899999999999999987 68999999999 8777766666 367888888 46
Q ss_pred CEEEEEe--CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEE-EEeCCCcEEEEECCC-CceeEEEeccccce
Q 011916 262 RILSSGS--RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELA-SGGNDNQLLVWNQHS-QQPTLRLTEHTAAV 337 (475)
Q Consensus 262 ~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~la-sg~~Dg~I~iwd~~~-~~~~~~~~~h~~~v 337 (475)
++|++++ .++.+.||.+.........+..+. .+..++|+|++++|+ +++.|+.+.||++.. ......+..+...+
T Consensus 97 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 175 (297)
T 2ojh_A 97 ALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN 175 (297)
T ss_dssp SEEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred CEEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence 8899888 445666666653334445555444 489999999999887 777889999998642 23345666788899
Q ss_pred eEEEECCCCCcEEEEecCCCCCeEEEEECC-CCceeeee-cCCCCeeEEEEcCCCCeEEEEEec---------CCCeEEE
Q 011916 338 KAIAWSPHQSSLLASGGGTADRCIRFWNTS-NGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGY---------SQNQIMV 406 (475)
Q Consensus 338 ~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~---------~dg~I~i 406 (475)
.+++|+|+++.+++++. .++.+++|++. .+..+..+ .+...+..+.|+|++++|++.... .++.|++
T Consensus 176 ~~~~~s~dg~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~ 253 (297)
T 2ojh_A 176 DGPDYSPDGRWIYFNSS--RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQL 253 (297)
T ss_dssp EEEEECTTSSEEEEEEC--TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEE
T ss_pred ccceECCCCCEEEEEec--CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEE
Confidence 99999999998887764 68888888875 34444444 345678899999999999885332 1257999
Q ss_pred EECCCCce--EEEecCCCcceEEEEECCCCCEEEEEeCCC
Q 011916 407 WKYPSMAK--VSTLTGHSLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 407 wd~~~~~~--~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
||+.+++. +..+.+|...+..++|+|||++|++++.|.
T Consensus 254 ~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 254 MDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99988765 445557888999999999999999887664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-23 Score=204.05 Aligned_cols=266 Identities=15% Similarity=0.115 Sum_probs=214.1
Q ss_pred eeEEecCCC-CEEEEEc--------CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCC
Q 011916 171 LNLVDWSSQ-NVLAVGL--------GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQVWDGTQ 240 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~--------~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~iwd~~~ 240 (475)
+..++|+++ +.+.++. ++.|++||..+++....+.. ...+.+++|+|+|++++++ ..++.|.+||..+
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 120 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT 120 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence 456888886 4444444 56899999999998887764 3457789999999966655 4479999999999
Q ss_pred CeeeEEecCCCCc---------eEEEEe--CCCEEEEEe--CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEE
Q 011916 241 CKRVRTFGGHQTR---------AGVLAW--NSRILSSGS--RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 241 ~~~~~~~~~h~~~---------v~~l~~--~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 307 (475)
++.+..+..+... +.+++| +++.+++++ .++.|.+||+. ..+.+..+..+...+.+++|+|++++|
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~s~dg~~l 199 (353)
T 3vgz_A 121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTAIQNTGKMSTGLALDSEGKRL 199 (353)
T ss_dssp CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEEECCCCTTCCCCEEETTTTEE
T ss_pred CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEEecCCCCccceEEECCCCCEE
Confidence 9998888765432 677888 467666665 57899999998 566666666566678899999999999
Q ss_pred EEEeCCCcEEEEECCCCceeEEEec----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE
Q 011916 308 ASGGNDNQLLVWNQHSQQPTLRLTE----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN 383 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~~~~~~~~----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~ 383 (475)
++++.++.|.+||+.+++.+..+.. +...+..++|+|+++.++++.. .++.|.+||+.+++.+..+..+.. ..
T Consensus 200 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~~~-~~ 276 (353)
T 3vgz_A 200 YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS--KAAEVLVVDTRNGNILAKVAAPES-LA 276 (353)
T ss_dssp EEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--SSSEEEEEETTTCCEEEEEECSSC-CC
T ss_pred EEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--CCCEEEEEECCCCcEEEEEEcCCC-ce
Confidence 9999999999999999988877664 4556788999999998888764 679999999999999888876554 67
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCC
Q 011916 384 LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE 444 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg 444 (475)
++|+|+++.++++ ...++.|.+||..+++.+..+..+ ..+.+++|+|||++|+.+..++
T Consensus 277 ~~~s~dg~~l~v~-~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 277 VLFNPARNEAYVT-HRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEETTTTEEEEE-ETTTTEEEEEETTTTEEEEEEECC-SEEEEEEECTTSCEEEEEEECC
T ss_pred EEECCCCCEEEEE-ECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEcCCCCEEEEEEccc
Confidence 9999999987774 557899999999999988888754 4689999999999777766553
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-24 Score=233.60 Aligned_cols=277 Identities=15% Similarity=0.095 Sum_probs=211.4
Q ss_pred ceeEEecCCC-C-EEEEEc-CC-----eEEEEECCCCcEEEEeeCCC-C----------------------CcEEEEEEc
Q 011916 170 YLNLVDWSSQ-N-VLAVGL-GT-----CVYLWTASNSKVTRLCDLGP-G----------------------DSVCSVQWT 218 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~~-~~-----~V~lw~~~~~~~~~~~~~~~-~----------------------~~V~~v~~s 218 (475)
.+..++|||+ . +++++. ++ .|++||+.+++...+..... . ..|.+++|+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4678999997 4 555555 66 89999999999877775321 1 237899999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCC
Q 011916 219 REGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSE 294 (475)
Q Consensus 219 pdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 294 (475)
|||++|++++. +.|.+||+.++. ....+..|...+..++| +|+.|+.++ ++.|.+||+. .+........+...
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~-~g~~~~~~~~~~~~ 194 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLA-SGRQMQLTADGSTT 194 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETT-TTEEEECCCCCCSS
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecC-CCCEEEeccCCccc
Confidence 99999999987 999999998873 45567778888999999 468888887 4699999997 34443333333332
Q ss_pred ----------------EEEEEEcCCCCEEEEEeCCC---------------------------------cEEEEECCC-C
Q 011916 295 ----------------VCGLKWSHDDRELASGGNDN---------------------------------QLLVWNQHS-Q 324 (475)
Q Consensus 295 ----------------V~~l~~s~~~~~lasg~~Dg---------------------------------~I~iwd~~~-~ 324 (475)
+.++.|||||++|++++.|+ .|++||+.+ +
T Consensus 195 ~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~ 274 (741)
T 2ecf_A 195 IGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQA 274 (741)
T ss_dssp EEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTC
T ss_pred eeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCC
Confidence 47799999999999988765 789999988 7
Q ss_pred ceeEEEe--ccccceeEEEECCCCCcEEEEec--CCCCCeEEEEECCCCceeeeecCCC-----CeeEEEEcCCCCeEEE
Q 011916 325 QPTLRLT--EHTAAVKAIAWSPHQSSLLASGG--GTADRCIRFWNTSNGHQLNSVDTGS-----QVCNLAWSKNVNELVS 395 (475)
Q Consensus 325 ~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~--Gs~d~~I~iwd~~~~~~~~~~~~~~-----~v~~l~~s~~~~~l~~ 395 (475)
+...... .|...+..++| |||+.|+++.. +..+..|++||+.+++....+.... .+..++|+|+|+.+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~ 353 (741)
T 2ecf_A 275 QTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWS 353 (741)
T ss_dssp CCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEE
T ss_pred ceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEE
Confidence 7654432 37788999999 99998887642 2346889999999998776664322 4568999999996666
Q ss_pred EEecCCCeEEEEECC-CCceEEEecCCCcceEEE-EECCCCCEEEEE-eCCC--CEEEEecCC
Q 011916 396 THGYSQNQIMVWKYP-SMAKVSTLTGHSLRVLYL-ATSPDGQTIVTG-AGDE--TLRFWNVFP 453 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~-~~~~~~~l~~h~~~V~~l-~~spdg~~l~s~-s~Dg--~I~iW~~~~ 453 (475)
+..+|.+.||.+. .+. ...+..|...|..+ .|+|||+.|+.. +.|+ .++||++..
T Consensus 354 --~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 354 --SERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp --ECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred --ecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 6678877777665 344 77888888889887 599999987654 4455 899999874
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=234.61 Aligned_cols=280 Identities=14% Similarity=0.169 Sum_probs=207.4
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCC---cEEEEEEcCCCCEEEEEeCC---------CeEEEEE
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGD---SVCSVQWTREGSYISVGTNL---------GQVQVWD 237 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~---~V~~v~~spdg~~la~g~~d---------g~v~iwd 237 (475)
...++|+|+ .+++.+.++.|++||+.+++...++. .+.. .|.+++|+|||++|++++.+ +.|.+||
T Consensus 19 ~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d 97 (723)
T 1xfd_A 19 DPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (723)
T ss_dssp CCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred ccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence 455889997 56666778999999999998877765 3433 48999999999999999874 7888999
Q ss_pred CCCCeeeEEec---CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCE-----------------
Q 011916 238 GTQCKRVRTFG---GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEV----------------- 295 (475)
Q Consensus 238 ~~~~~~~~~~~---~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V----------------- 295 (475)
+.+++. ..+. +|...+..++| +|+.|+.++. +.|++||+. .+........+...+
T Consensus 98 ~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~-~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 98 IPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHV-GKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp SSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSS-SSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred CCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECC-CCceEEEecCCCCCceECcccceeEEEEeccC
Confidence 998876 3333 45556888888 4688888886 799999998 444444444444333
Q ss_pred -EEEEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCceeEEEecc------c
Q 011916 296 -CGLKWSHDDRELASGGNDN----------------------------------QLLVWNQHSQQPTLRLTEH------T 334 (475)
Q Consensus 296 -~~l~~s~~~~~lasg~~Dg----------------------------------~I~iwd~~~~~~~~~~~~h------~ 334 (475)
.++.|||||++|++++.|+ .|++||+.+++....+..+ .
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~ 254 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE 254 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence 7899999999999987553 7999999988765666554 5
Q ss_pred cceeEEEECCCCCcEEEEec-CCCCCeEEEEECCCCceeeeec--CCCCe----eEEEEcCCCCeEEEEEecCCC-----
Q 011916 335 AAVKAIAWSPHQSSLLASGG-GTADRCIRFWNTSNGHQLNSVD--TGSQV----CNLAWSKNVNELVSTHGYSQN----- 402 (475)
Q Consensus 335 ~~v~~l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~~~~~~~~--~~~~v----~~l~~s~~~~~l~~~~g~~dg----- 402 (475)
..+..++|+|||+.+++... +..+..|++||+.++++...+. +...+ ..++|+|+|+.|+.+.+..++
T Consensus 255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcce
Confidence 67899999999996655432 2245789999999998766553 22333 378999999998875345566
Q ss_pred -eEEEEEC-CCCc--eEEEecCCCcceEE-EEECCCCCEEEEEeCC---CCEEEEecCCC
Q 011916 403 -QIMVWKY-PSMA--KVSTLTGHSLRVLY-LATSPDGQTIVTGAGD---ETLRFWNVFPS 454 (475)
Q Consensus 403 -~I~iwd~-~~~~--~~~~l~~h~~~V~~-l~~spdg~~l~s~s~D---g~I~iW~~~~~ 454 (475)
.|++||. ..+. ....+..+...+.. ++|+|||+.|+..+.+ +.++||++...
T Consensus 335 ~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred eEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 5777883 4443 14555544444554 6999999999876655 78999999754
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-24 Score=203.85 Aligned_cols=231 Identities=16% Similarity=0.143 Sum_probs=163.1
Q ss_pred CCCceeEEecCCC--CEEEEEcCC----eEEEEECCCC----cEEEEeeCCCCCcEEEEEEcCCCCEEEEEe--CCCeEE
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGT----CVYLWTASNS----KVTRLCDLGPGDSVCSVQWTREGSYISVGT--NLGQVQ 234 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~----~V~lw~~~~~----~~~~~~~~~~~~~V~~v~~spdg~~la~g~--~dg~v~ 234 (475)
....|..+.+.|+ +++.++.++ .|+..-.... ...... .++...|.++ ++|+++.++. .|+.|+
T Consensus 85 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s-~g~~~~v~~l---~~g~lv~ss~~g~d~~V~ 160 (356)
T 2w18_A 85 AEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLK-SGNIKAVLGL---TKRRLVSSSGTLSDQQVE 160 (356)
T ss_dssp CSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEE-EEEEEEEEEE---TTTEEEEEESSSTTCEEE
T ss_pred cCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEe-CCCeEEEEec---CCCcEEEecccCCCCcEE
Confidence 3456777888886 777777754 2222222111 111111 1333334443 4555555543 489999
Q ss_pred EEEC-CCCeeeEEecCCCCceEEEEe-----CCCEEEEEeCCCcEEEEECCCCCccEEEecCcc---CCEEEEEEcCCCC
Q 011916 235 VWDG-TQCKRVRTFGGHQTRAGVLAW-----NSRILSSGSRDRNILQHDLRVSSDYICKLAGHK---SEVCGLKWSHDDR 305 (475)
Q Consensus 235 iwd~-~~~~~~~~~~~h~~~v~~l~~-----~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~s~~~~ 305 (475)
+|++ .+++.+..+.+|...+..++| ++.+|++|+.|++|+|||++ .++.+..+.+|. ..+++++|+|+|.
T Consensus 161 ~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~-TGk~l~tL~g~~~~v~~v~~vafSpdG~ 239 (356)
T 2w18_A 161 VMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK-TGQLLKKMHIDDSYQASVCHKAYSEMGL 239 (356)
T ss_dssp EEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-TCCEEEEEECCC---CCCEEEEEEETTE
T ss_pred EEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-CCcEEEEEcCCCcceeeeEEEEECCCCC
Confidence 9999 558888888888887777666 34899999999999999998 567778887644 4678889999998
Q ss_pred EE------------EEEeCCCcEEEEECCCCceeEEE-----eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 306 EL------------ASGGNDNQLLVWNQHSQQPTLRL-----TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 306 ~l------------asg~~Dg~I~iwd~~~~~~~~~~-----~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
++ ++|+.|++|++||..+++.+..+ .+|...+.+..++ +. ++++++ .|++|+|||+.+
T Consensus 240 ~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~-~lASgS--~DgTIkIWDl~t 314 (356)
T 2w18_A 240 LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DH-CAAAIL--TSGTIAIWDLLL 314 (356)
T ss_dssp EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TT-EEEEEE--TTSCEEEEETTT
T ss_pred EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CC-EEEEEc--CCCcEEEEECCC
Confidence 76 66888999999999999887655 2555554444444 44 666765 899999999999
Q ss_pred Cceeeeec-CCCCee-EEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 369 GHQLNSVD-TGSQVC-NLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 369 ~~~~~~~~-~~~~v~-~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
++++.++. +...+. .++|+|+|++|++ |+.|++|+|||+
T Consensus 315 Gk~l~tL~gH~~~vvs~vafSPDG~~LaS--GS~D~TIklWd~ 355 (356)
T 2w18_A 315 GQCTALLPPVSDQHWSFVKWSGTDSHLLA--GQKDGNIFVYHY 355 (356)
T ss_dssp CSEEEEECCC--CCCCEEEECSSSSEEEE--ECTTSCEEEEEE
T ss_pred CcEEEEecCCCCCeEEEEEECCCCCEEEE--EECCCcEEEecC
Confidence 99999996 444444 6899999999999 899999999995
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-23 Score=199.30 Aligned_cols=268 Identities=10% Similarity=0.012 Sum_probs=208.1
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCC-cEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEecC-C----CC
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGD-SVCSVQWTREGSYISV-GTNLGQVQVWDGTQCKRVRTFGG-H----QT 252 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~-~V~~v~~spdg~~la~-g~~dg~v~iwd~~~~~~~~~~~~-h----~~ 252 (475)
.+++++.++.|++||..+++....+..++.. .+.+++|+|+|+++++ +..++.|.+||+.+++.+..+.. + ..
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 82 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence 3566778999999999999988877654432 4789999999987655 45578999999999988877653 2 12
Q ss_pred ceEEEEeC--CCEEEEEe------------CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 253 RAGVLAWN--SRILSSGS------------RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 253 ~v~~l~~~--~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
.+..++|+ ++.|+++. .++.|.+||+. ....+..+.. ...+.+++|+|++++|+++ ++.|++
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECC-CCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 56677884 67888876 67999999997 4555555543 4567889999999988888 689999
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC-----------------------eEEEEECCCCceeeee
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR-----------------------CIRFWNTSNGHQLNSV 375 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~-----------------------~I~iwd~~~~~~~~~~ 375 (475)
||+.+++.+..+..+.. ...+.|+|++..+++++. .++ .|.+||+.+++.. .+
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~ 234 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHE--SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MR 234 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCT--TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE
T ss_pred EECCCCcEeeeeecccc-CCCceeCCCccEEeeecc--CCCceeeeeeccccccccccccccccceEEEeCCCCCce-Ee
Confidence 99999988777665431 123488999997776543 333 4799999998875 32
Q ss_pred ---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 376 ---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 376 ---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
.+...+..++|+|+++++++ + ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.|+.|++||+.
T Consensus 235 ~~~~~~~~~~~~~~s~dg~~l~~--~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNPAKTRAFG--A--YNVLESFDLEKNASIKRVPLP-HSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEE--E--ESEEEEEETTTTEEEEEEECS-SCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred ecCCCCCceeeEEECCCCCEEEE--e--CCeEEEEECCCCcCcceecCC-CceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence 24457888999999999998 4 689999999999888777643 467899999999999999999999999999
Q ss_pred CCCCCCCc
Q 011916 453 PSLKAPAL 460 (475)
Q Consensus 453 ~~~~~~~~ 460 (475)
+++....+
T Consensus 310 ~~~~~~~~ 317 (337)
T 1pby_B 310 TLEKKGQV 317 (337)
T ss_dssp TCCEEEEE
T ss_pred CCcEEEEE
Confidence 88765543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-23 Score=220.13 Aligned_cols=277 Identities=12% Similarity=0.104 Sum_probs=207.1
Q ss_pred CceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----Cee
Q 011916 169 FYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ-----CKR 243 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~-----~~~ 243 (475)
..+..++|+++..++++.++.|++||+.+++...+. .+...+.+++|+|||++||++ .++.|++||+.+ ++.
T Consensus 82 ~~v~~~~~spd~~~~~~~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~ 158 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLFTQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA 158 (706)
T ss_dssp CCCEEEEETTTTEEEEEETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred cCceeEEECCCCeEEEEECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence 457889999998777778899999999999876665 456678899999999999995 679999999998 776
Q ss_pred eEEecCCCCc--------------eEEEEe--CCCEEEEEe---------------------------------CCCcEE
Q 011916 244 VRTFGGHQTR--------------AGVLAW--NSRILSSGS---------------------------------RDRNIL 274 (475)
Q Consensus 244 ~~~~~~h~~~--------------v~~l~~--~~~~l~sgs---------------------------------~dg~I~ 274 (475)
......+... +.+++| ++++|++++ .+..|.
T Consensus 159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~ 238 (706)
T 2z3z_A 159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVG 238 (706)
T ss_dssp EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEE
T ss_pred EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEE
Confidence 6554444332 478888 578888887 446799
Q ss_pred EEECCCCCccEEEe--cCccCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEe-c-ccc---ceeEEEE
Q 011916 275 QHDLRVSSDYICKL--AGHKSEVCGLKWSHDDRELASGGNDN-----QLLVWNQHSQQPTLRLT-E-HTA---AVKAIAW 342 (475)
Q Consensus 275 iwd~~~~~~~~~~~--~~h~~~V~~l~~s~~~~~lasg~~Dg-----~I~iwd~~~~~~~~~~~-~-h~~---~v~~l~~ 342 (475)
+||+.. +...... ..|...+.+++|+|||++|++++.++ .|++||+.+++....+. . +.. .+..++|
T Consensus 239 ~~d~~~-~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (706)
T 2z3z_A 239 IYHLAT-GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTF 317 (706)
T ss_dssp EEETTT-TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEE
T ss_pred EEECCC-CceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCcee
Confidence 999973 3332222 24667899999999999999987765 89999999984333332 2 222 2467899
Q ss_pred CC--CCCcEEEEecCCCCCeEEEEECC-CCceeeeec-CCCCeeE-EEEcCCCCeEEEEEecCCC----eEEEEECCCCc
Q 011916 343 SP--HQSSLLASGGGTADRCIRFWNTS-NGHQLNSVD-TGSQVCN-LAWSKNVNELVSTHGYSQN----QIMVWKYPSMA 413 (475)
Q Consensus 343 sp--~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~~-~~~~v~~-l~~s~~~~~l~~~~g~~dg----~I~iwd~~~~~ 413 (475)
+| +|+. ++++. .|+.+++|++. ++..+..+. +...+.. ++|+|+++.|+++ +..++ .|+.||..+++
T Consensus 318 sp~~dg~~-l~~~~--~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~-~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 318 LPGSNNQF-IWQSR--RDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFE-STEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp CTTCSSEE-EEEEC--TTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEE-ESSSCTTCBEEEEEETTCCC
T ss_pred ecCCCCEE-EEEEc--cCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEE-ecCCCCceEEEEEEEcCCCC
Confidence 99 9984 45544 68888888875 566666664 3445666 7999999998875 33444 77888887765
Q ss_pred eEEEecCCCcceEEEEECCCCCEEEEEeCC----CCEEEEecCCCC
Q 011916 414 KVSTLTGHSLRVLYLATSPDGQTIVTGAGD----ETLRFWNVFPSL 455 (475)
Q Consensus 414 ~~~~l~~h~~~V~~l~~spdg~~l~s~s~D----g~I~iW~~~~~~ 455 (475)
+..+. |...+..++|+|||++|+..+.+ +.|++||+.++.
T Consensus 394 -~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 394 -TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp -CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred -ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 34444 67779999999999988876544 459999998765
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.9e-22 Score=194.58 Aligned_cols=263 Identities=12% Similarity=0.106 Sum_probs=188.4
Q ss_pred CCeEEEEE--CCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCe--eeEEecCCCCceEEEEe
Q 011916 187 GTCVYLWT--ASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN---LGQVQVWDGTQCK--RVRTFGGHQTRAGVLAW 259 (475)
Q Consensus 187 ~~~V~lw~--~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~ 259 (475)
++.|++|. ..+++...+....+...+..++|+|+|+ |++++. ++.|.+|++.+++ .+..+..+...+..++|
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence 34566655 4567665543334456778899999999 555544 6899999997765 44444556777888888
Q ss_pred --CCCEEEEEe-CCCcEEEEECCCCCcc--EEEecC---------ccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CC
Q 011916 260 --NSRILSSGS-RDRNILQHDLRVSSDY--ICKLAG---------HKSEVCGLKWSHDDRELASGGNDNQLLVWNQH-SQ 324 (475)
Q Consensus 260 --~~~~l~sgs-~dg~I~iwd~~~~~~~--~~~~~~---------h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~-~~ 324 (475)
++++|++++ .++.|.+|++...+.. +..+.. +...+.+++|+|+|+++++...++.|.+||+. ++
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g 173 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG 173 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence 467787777 7899999999643332 222211 12348899999999966666678899999998 45
Q ss_pred ceeE--EEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC--Cce--eeeecC-C------CCeeEEEEcCCC
Q 011916 325 QPTL--RLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN--GHQ--LNSVDT-G------SQVCNLAWSKNV 390 (475)
Q Consensus 325 ~~~~--~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~--~~~--~~~~~~-~------~~v~~l~~s~~~ 390 (475)
+... .+.. ....+..++|+|+|+++++++. .++.|.+|++.. ++. +..+.. . ..+..++|+|+|
T Consensus 174 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG 251 (347)
T 3hfq_A 174 QLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE--LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG 251 (347)
T ss_dssp CEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS
T ss_pred cEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC--CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC
Confidence 4322 2222 2336788999999998888765 789999999874 543 222221 1 348889999999
Q ss_pred CeEEEEEecCCCeEEEEECC---CCceEEEecCCCcceEEEEECCCCCEEEEEeCC-CCEEEEecCC
Q 011916 391 NELVSTHGYSQNQIMVWKYP---SMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD-ETLRFWNVFP 453 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~---~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-g~I~iW~~~~ 453 (475)
++|+++ +..++.|.+|++. ..+.+..+..+...+..++|+|||++|++++.+ +.|.+|+++.
T Consensus 252 ~~l~v~-~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 252 HFLYVS-NRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp CEEEEE-EETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CEEEEE-eCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 988764 4568999999997 335666677777778999999999998888764 8999997754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-21 Score=190.43 Aligned_cols=262 Identities=8% Similarity=0.115 Sum_probs=189.0
Q ss_pred CCeEEEEEC--CCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEECCC--Ce--eeEEecCCCCceEE
Q 011916 187 GTCVYLWTA--SNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL----GQVQVWDGTQ--CK--RVRTFGGHQTRAGV 256 (475)
Q Consensus 187 ~~~V~lw~~--~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d----g~v~iwd~~~--~~--~~~~~~~h~~~v~~ 256 (475)
++.|++|.+ .+++...+... +...+..++|+|+|++|++++.+ |.|.+|++.. ++ .+.....+......
T Consensus 26 ~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~ 104 (361)
T 3scy_A 26 SKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCY 104 (361)
T ss_dssp CCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEE
T ss_pred CCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEE
Confidence 567888865 56777666554 56777889999999999999886 7999998765 43 33344445667778
Q ss_pred EEeCCCEEEEEe-CCCcEEEEECCCCCccE---E--Eec--------CccCCEEEEEEcCCCCEEEEEe-CCCcEEEEEC
Q 011916 257 LAWNSRILSSGS-RDRNILQHDLRVSSDYI---C--KLA--------GHKSEVCGLKWSHDDRELASGG-NDNQLLVWNQ 321 (475)
Q Consensus 257 l~~~~~~l~sgs-~dg~I~iwd~~~~~~~~---~--~~~--------~h~~~V~~l~~s~~~~~lasg~-~Dg~I~iwd~ 321 (475)
+++++++|++++ .++.|.+|++...+... . ... .+...+.+++|+|+|++|++++ .++.|.+|++
T Consensus 105 ~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~ 184 (361)
T 3scy_A 105 LTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNI 184 (361)
T ss_dssp EEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred EEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEE
Confidence 888888777766 68899999997443221 1 111 1223468899999999776655 4789999998
Q ss_pred CCCce------e-------EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce--eeeec----CCCCee
Q 011916 322 HSQQP------T-------LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ--LNSVD----TGSQVC 382 (475)
Q Consensus 322 ~~~~~------~-------~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~--~~~~~----~~~~v~ 382 (475)
..... + .....+...+..++|+|+|+++++++. .++.|.+||+.+++. +..+. ......
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~--~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~ 262 (361)
T 3scy_A 185 NPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE--IGGTVIAFRYADGMLDEIQTVAADTVNAQGSG 262 (361)
T ss_dssp CTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET--TTCEEEEEEEETTEEEEEEEEESCSSCCCCEE
T ss_pred cCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC--CCCeEEEEEecCCceEEeEEEecCCCCCCCcc
Confidence 75431 1 112234556789999999998888764 689999999987754 22222 224567
Q ss_pred EEEEcCCCCeEEEEEecC-CCeEEEEECC--CCc--eEEEecCCCcceEEEEECCCCCEEEEEe-CCCCEEEEecCC
Q 011916 383 NLAWSKNVNELVSTHGYS-QNQIMVWKYP--SMA--KVSTLTGHSLRVLYLATSPDGQTIVTGA-GDETLRFWNVFP 453 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~-dg~I~iwd~~--~~~--~~~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iW~~~~ 453 (475)
.++|+|+|++|+++ ... ++.|.+|++. +++ .+..+.. ...+.+++|+|||++|++++ .++.|.+|+++.
T Consensus 263 ~i~~spdg~~l~v~-~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 263 DIHLSPDGKYLYAS-NRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp EEEECTTSSEEEEE-ECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred cEEECCCCCEEEEE-CCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 99999999999774 334 6899999985 343 4555554 55688999999999988887 578999987764
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=197.41 Aligned_cols=281 Identities=10% Similarity=0.092 Sum_probs=191.7
Q ss_pred CCceeEEecCCC-CEEEEEcCCeEEEEECCCC-----------cEEEE---eeCCCCCcEEEEEEcCCCCEEE----EEe
Q 011916 168 DFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNS-----------KVTRL---CDLGPGDSVCSVQWTREGSYIS----VGT 228 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~-----------~~~~~---~~~~~~~~V~~v~~spdg~~la----~g~ 228 (475)
+..+++++|+++ .+++++....|++|+.... ..... ..+.+...|.+++|+|+|++|| +|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 446788999986 5666666555999875311 11110 1124567899999999999999 678
Q ss_pred CCCeEEEEECCCC--------e---eeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCC
Q 011916 229 NLGQVQVWDGTQC--------K---RVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSE 294 (475)
Q Consensus 229 ~dg~v~iwd~~~~--------~---~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~ 294 (475)
.|+.|+|||+.++ + .+..+.+|...|.+++|+ +++|++++.||+|++||++. ........+|...
T Consensus 116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-~~~~~~~~~~~~~ 194 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-TVKVCATLPSTVA 194 (434)
T ss_dssp TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESS-SEEEEEEECGGGC
T ss_pred CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCC-CcceeeccCCCCc
Confidence 8999999998654 2 245567899999999995 46899999999999999984 4555566778999
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc-------ccceeEEEECCCCCcEEEEecCCCC------CeE
Q 011916 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH-------TAAVKAIAWSPHQSSLLASGGGTAD------RCI 361 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h-------~~~v~~l~~sp~~~~ll~sg~Gs~d------~~I 361 (475)
|.+++|+|+|++|++|+.||.|++||.+ ++....+..| ...|.+++|++++.++++... .+ ..+
T Consensus 195 v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~--~dg~~~~~~~v 271 (434)
T 2oit_A 195 VTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA--ADGTLETSPDV 271 (434)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE--TTCCSSSCCEE
T ss_pred eeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEcc--CCCccCCCCce
Confidence 9999999999999999999999999998 5555555433 348999999998876666554 33 349
Q ss_pred EEEECCCCc-----eeeee-cC-------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC--ce-EEEe-------
Q 011916 362 RFWNTSNGH-----QLNSV-DT-------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM--AK-VSTL------- 418 (475)
Q Consensus 362 ~iwd~~~~~-----~~~~~-~~-------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~--~~-~~~l------- 418 (475)
++|++.+.. ....+ .. ......+.+-++.+.++++ +...+.|.++..... .. ...+
T Consensus 272 ~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~-s~~s~dv~vl~~~~~~~~~~~~~~~d~~ra~ 350 (434)
T 2oit_A 272 VMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAA-SAASTEVSILARQSDQINWESWLLEDSSRAE 350 (434)
T ss_dssp EEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEE-ETTCSBCEEEEECTTSSCEEEEEECGGGCCB
T ss_pred EEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEe-cCCCCceeEEEecCCCCccEEEecccccccc
Confidence 999998652 11111 11 1122234444777777665 444555555554221 00 0111
Q ss_pred -c----CCCcceEEEEECC---------------CCCEEEEEeCCCCEEEEecCC
Q 011916 419 -T----GHSLRVLYLATSP---------------DGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 419 -~----~h~~~V~~l~~sp---------------dg~~l~s~s~Dg~I~iW~~~~ 453 (475)
. ..+..+.++++.- --..|...+.||.|..|.+..
T Consensus 351 lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 351 LPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp CCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred ccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 0 1222334444421 124788889999999999886
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=215.61 Aligned_cols=276 Identities=12% Similarity=0.099 Sum_probs=195.0
Q ss_pred eEEecCCCCEEEEEcCCeEEEEECCCCcE--EEEeeCCC---------------CCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 172 NLVDWSSQNVLAVGLGTCVYLWTASNSKV--TRLCDLGP---------------GDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 172 ~~l~ws~~~~la~~~~~~V~lw~~~~~~~--~~~~~~~~---------------~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
+.+.|..+.++..+.++ | +||+.+++. ..+..... ...|.+++|+|| +.++++. ++.|+
T Consensus 29 ~~~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~-~~~i~ 104 (706)
T 2z3z_A 29 VGLQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT-QGGLV 104 (706)
T ss_dssp TTCEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-TTEEE
T ss_pred CCCcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-CCEEE
Confidence 33778845666666666 8 999999987 44443110 146999999999 6666664 49999
Q ss_pred EEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCC----CccEEEecCccCC--------------
Q 011916 235 VWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVS----SDYICKLAGHKSE-------------- 294 (475)
Q Consensus 235 iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~----~~~~~~~~~h~~~-------------- 294 (475)
+||+.+++.... ..+...+.+++| +++.|+++ .++.|.+||+... +........+...
T Consensus 105 ~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~ 182 (706)
T 2z3z_A 105 GFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGI 182 (706)
T ss_dssp EEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTC
T ss_pred EEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCC
Confidence 999998876544 446667888888 46788885 6899999999841 4444433333333
Q ss_pred EEEEEEcCCCCEEEEEe---------------------------------CCCcEEEEECCCCceeEEEe--ccccceeE
Q 011916 295 VCGLKWSHDDRELASGG---------------------------------NDNQLLVWNQHSQQPTLRLT--EHTAAVKA 339 (475)
Q Consensus 295 V~~l~~s~~~~~lasg~---------------------------------~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~ 339 (475)
+.++.|+|||++|++++ .+..|++||+.+++...... .|...+..
T Consensus 183 ~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ 262 (706)
T 2z3z_A 183 EKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTN 262 (706)
T ss_dssp CCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEE
T ss_pred CceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEee
Confidence 48899999999999987 44689999999887544332 46678999
Q ss_pred EEECCCCCcEEEEec--CCCCCeEEEEECCCCceeeeec---CCC---CeeEEEEcC--CCCeEEEEEecCCCeEEEEEC
Q 011916 340 IAWSPHQSSLLASGG--GTADRCIRFWNTSNGHQLNSVD---TGS---QVCNLAWSK--NVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 340 l~~sp~~~~ll~sg~--Gs~d~~I~iwd~~~~~~~~~~~---~~~---~v~~l~~s~--~~~~l~~~~g~~dg~I~iwd~ 409 (475)
++|+|+|+.|+++.. +..+..|++||+.+++....+. ... .+..+.|+| +|+++++ +..++.+.||++
T Consensus 263 ~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~--~~~~g~~~l~~~ 340 (706)
T 2z3z_A 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQ--SRRDGWNHLYLY 340 (706)
T ss_dssp EEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEE--ECTTSSCEEEEE
T ss_pred EEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEE--EccCCccEEEEE
Confidence 999999997777542 0012489999999994433331 222 246789999 9997776 667888888887
Q ss_pred C-CCceEEEecCCCcceEE-EEECCCCCEEEEEeCC-C----CEEEEecCCCC
Q 011916 410 P-SMAKVSTLTGHSLRVLY-LATSPDGQTIVTGAGD-E----TLRFWNVFPSL 455 (475)
Q Consensus 410 ~-~~~~~~~l~~h~~~V~~-l~~spdg~~l~s~s~D-g----~I~iW~~~~~~ 455 (475)
. ++..+..+..|...+.. ++|+|||+.|+.++.+ + .|..|++.++.
T Consensus 341 ~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 341 DTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp ETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC
T ss_pred ECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC
Confidence 6 67778888888888877 7999999988766554 3 56666665554
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-22 Score=213.43 Aligned_cols=275 Identities=12% Similarity=0.130 Sum_probs=204.7
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCC---cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNS---KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~---~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.+..++|||+ ..|+.+.++.|++||+.++ +...+. .+...+.+++|+|||++||+++. +.|.+||+.+++...
T Consensus 110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~--~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLT--HGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQ 186 (741)
T ss_dssp ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCC--CSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcc--cCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEE
Confidence 3667999998 6677777799999999998 654443 56678999999999999999885 699999999988776
Q ss_pred EecCCCCc----------------eEEEEe--CCCEEEEEeCCC---------------------------------cEE
Q 011916 246 TFGGHQTR----------------AGVLAW--NSRILSSGSRDR---------------------------------NIL 274 (475)
Q Consensus 246 ~~~~h~~~----------------v~~l~~--~~~~l~sgs~dg---------------------------------~I~ 274 (475)
....+... +..++| +++.|++++.|+ .|.
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 55544432 367888 578888887665 788
Q ss_pred EEECCCCCccEEEec--CccCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCceeEEEecccc----ceeEEEEC
Q 011916 275 QHDLRVSSDYICKLA--GHKSEVCGLKWSHDDRELASGGN-----DNQLLVWNQHSQQPTLRLTEHTA----AVKAIAWS 343 (475)
Q Consensus 275 iwd~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~-----Dg~I~iwd~~~~~~~~~~~~h~~----~v~~l~~s 343 (475)
+||+...+....... .|...+..++| |||++|++++. +..|++||+.+++....+..+.. .+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 899874034333332 47788999999 99999997754 56899999999987776665543 45689999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECC-CCceeeee-cCCCCeeEE-EEcCCCCeEEEEEecCCC--eEEEEECCC-CceEEE
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTS-NGHQLNSV-DTGSQVCNL-AWSKNVNELVSTHGYSQN--QIMVWKYPS-MAKVST 417 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~-~~~~~~~~-~~~~~v~~l-~~s~~~~~l~~~~g~~dg--~I~iwd~~~-~~~~~~ 417 (475)
|+|+ ++++++ .|+.++||.+. ++. ...+ .+...+..+ .|+|+++.|+++ +..++ .++||++.. +.....
T Consensus 346 pdg~-~~~~~~--~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~-~~~~~~~~~~l~~~~~~g~~~~~ 420 (741)
T 2ecf_A 346 DDGS-ILWSSE--RTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFR-AGIESARESQIYAVPLQGGQPQR 420 (741)
T ss_dssp TTSC-EEEEEC--TTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEE-ECSSCTTCBEEEEEETTCCCCEE
T ss_pred CCCe-EEEEec--CCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEE-EeCCCCceEEEEEEEcCCCCeee
Confidence 9999 666654 68877777654 344 4444 345667777 599999988765 44555 889998864 555666
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCC----CCEEEEecCCC
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGD----ETLRFWNVFPS 454 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~D----g~I~iW~~~~~ 454 (475)
+.. ...+..++|+|||++|+....+ ..+.+|+...+
T Consensus 421 l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 421 LSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp CCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred ccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence 665 6678899999999998876543 46888887543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-22 Score=221.14 Aligned_cols=278 Identities=9% Similarity=0.037 Sum_probs=207.1
Q ss_pred CCceeEEecCCC-CEEEEE-cC------CeEEEEECCCCcEEEEeeCCCCCcE-------EEEEEcCCCCEEEEEeCC--
Q 011916 168 DFYLNLVDWSSQ-NVLAVG-LG------TCVYLWTASNSKVTRLCDLGPGDSV-------CSVQWTREGSYISVGTNL-- 230 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~-~~------~~V~lw~~~~~~~~~~~~~~~~~~V-------~~v~~spdg~~la~g~~d-- 230 (475)
...+.+++|||+ ..|+.+ .+ ..|++|++.+++...+. .|...+ .+++|+|||+++++++.+
T Consensus 52 ~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~lt--~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~ 129 (1045)
T 1k32_A 52 LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT--YFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQP 129 (1045)
T ss_dssp SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC--CCCEEEETTEECSEEEEECTTCCEEEEECTTSS
T ss_pred CCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEEcc--cCCCcccccccccccccCCCCCEEEEEECCcCC
Confidence 456888999997 445543 22 37999999998854443 567777 899999999977777644
Q ss_pred ----CeEEEEECCCCeee-------------------------------------------------EEecCCCCceEEE
Q 011916 231 ----GQVQVWDGTQCKRV-------------------------------------------------RTFGGHQTRAGVL 257 (475)
Q Consensus 231 ----g~v~iwd~~~~~~~-------------------------------------------------~~~~~h~~~v~~l 257 (475)
..|.+|++.+++.. ..+.+|...+.++
T Consensus 130 ~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~ 209 (1045)
T 1k32_A 130 FSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSP 209 (1045)
T ss_dssp STTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEE
T ss_pred CcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccce
Confidence 35778887655432 1223566677788
Q ss_pred EeCCC-EEEEEeCCCcEEEEECCCCCccEEEecC----------------------------------------------
Q 011916 258 AWNSR-ILSSGSRDRNILQHDLRVSSDYICKLAG---------------------------------------------- 290 (475)
Q Consensus 258 ~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~---------------------------------------------- 290 (475)
.|+++ ++++++.|+.+.+|.+...+.....+..
T Consensus 210 ~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~ 289 (1045)
T 1k32_A 210 VIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPE 289 (1045)
T ss_dssp EEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCC
T ss_pred EEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccc
Confidence 88654 5556677888888876532222222211
Q ss_pred ----ccCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCceeEEEecccc-ceeEEEECCCCCcEEEEecCCCCCeEE-E
Q 011916 291 ----HKSEVCGLKWS-HDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTA-AVKAIAWSPHQSSLLASGGGTADRCIR-F 363 (475)
Q Consensus 291 ----h~~~V~~l~~s-~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~-~v~~l~~sp~~~~ll~sg~Gs~d~~I~-i 363 (475)
|...+.+++|+ |||++|++++ ++.|++|++..+... .+..|.. .+..++|+ +|+.+++++ .+..+. +
T Consensus 290 ~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~s-dg~~l~~~s---~~~~l~~~ 363 (1045)
T 1k32_A 290 DRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPEPLRIRYVRRGGD-TKVAFIHGT---REGDFLGI 363 (1045)
T ss_dssp SEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSCCSCEEEEEECSS-SEEEEEEEE---TTEEEEEE
T ss_pred cccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccCCCcceEEeeeEc-CCCeEEEEE---CCCceEEE
Confidence 11246778888 8888888777 678888888776543 4556666 89999999 998777654 478888 9
Q ss_pred EECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 364 WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 364 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
||+.+++......+...+..++|+|+|+.|++ +..++.|++||+.+++....+.+|...+..++|+|||++|++++.+
T Consensus 364 ~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~--~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~ 441 (1045)
T 1k32_A 364 YDYRTGKAEKFEENLGNVFAMGVDRNGKFAVV--ANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPL 441 (1045)
T ss_dssp EETTTCCEEECCCCCCSEEEEEECTTSSEEEE--EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred EECCCCCceEecCCccceeeeEECCCCCEEEE--ECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecC
Confidence 99988876555555678999999999999998 6788999999999998888887899999999999999999988765
Q ss_pred C----------CEEEEecCCCC
Q 011916 444 E----------TLRFWNVFPSL 455 (475)
Q Consensus 444 g----------~I~iW~~~~~~ 455 (475)
+ .|++||+..+.
T Consensus 442 ~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 442 KHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp CSSTTCSCCEEEEEEEETTTTE
T ss_pred ccccccCCCCCeEEEEECCCCc
Confidence 4 89999998765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-21 Score=187.53 Aligned_cols=244 Identities=9% Similarity=0.073 Sum_probs=193.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCeeeEEecCCCCceEEEEe--CCC-EEEEEeCCCcEEEEEC
Q 011916 209 GDSVCSVQWTREGSYISVGTN-------LGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSR-ILSSGSRDRNILQHDL 278 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~-------dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~-~l~sgs~dg~I~iwd~ 278 (475)
...+..++|+|+|++|++++. ++.|.+||..+++.+..+... ..+..++| +++ +++++..++.|.+||.
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 456889999999999988874 468999999999988887643 33556666 566 4555566899999999
Q ss_pred CCCCccEEEecCccCC---------EEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEeccccceeEEEECCCCC
Q 011916 279 RVSSDYICKLAGHKSE---------VCGLKWSHDDRELASGG--NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~---------V~~l~~s~~~~~lasg~--~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~ 347 (475)
. .++.+..+..+... +.++.|+|+++++++++ .++.|.+||..+++.+..+..+...+.+++|+|+++
T Consensus 119 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~ 197 (353)
T 3vgz_A 119 K-TGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK 197 (353)
T ss_dssp T-TCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred C-CCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence 8 45555555544322 78999999999887776 478999999999998888775666789999999999
Q ss_pred cEEEEecCCCCCeEEEEECCCCceeeeecC-----CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDT-----GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 348 ~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-----~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
.++++. .++.|.+||+.+++.+..+.. ...+..++|+|+++.++++ ...++.|.+||..+++.+..+..+.
T Consensus 198 ~l~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~~v~~~d~~~~~~~~~~~~~~ 273 (353)
T 3vgz_A 198 RLYTTN---ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT-DSKAAEVLVVDTRNGNILAKVAAPE 273 (353)
T ss_dssp EEEEEC---TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE-ESSSSEEEEEETTTCCEEEEEECSS
T ss_pred EEEEEc---CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE-eCCCCEEEEEECCCCcEEEEEEcCC
Confidence 877764 589999999999998887754 3457889999999988775 4456999999999999888877544
Q ss_pred cceEEEEECCCCCEEEEEe-CCCCEEEEecCCCCCCCCc
Q 011916 423 LRVLYLATSPDGQTIVTGA-GDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 423 ~~V~~l~~spdg~~l~s~s-~Dg~I~iW~~~~~~~~~~~ 460 (475)
. ..++|+|||++++.++ .++.|.+||+.+++....+
T Consensus 274 ~--~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 274 S--LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp C--CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred C--ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 2 5799999999666555 6899999999877655443
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-21 Score=185.86 Aligned_cols=260 Identities=12% Similarity=0.102 Sum_probs=181.8
Q ss_pred ceeEEecCCC-C-EEEEEcC-CeEEEEECC--CCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECC---C
Q 011916 170 YLNLVDWSSQ-N-VLAVGLG-TCVYLWTAS--NSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGT---Q 240 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~~~-~~V~lw~~~--~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~---~ 240 (475)
.+..++|+++ + +++++.+ +.|.+|++. +++...+..+.....+.+++|+|+|++|++++. ++.|.+||+. .
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~ 118 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLP 118 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcc
Confidence 3566899987 4 5555555 899999998 666554433333347889999999998877765 8899999994 3
Q ss_pred CeeeEEecCCCCceEEEEeC--CCEEEEEe-CCCcEEEEECCCCCccEE----Eec-CccCCEEEEEEcCCCCEEEEEe-
Q 011916 241 CKRVRTFGGHQTRAGVLAWN--SRILSSGS-RDRNILQHDLRVSSDYIC----KLA-GHKSEVCGLKWSHDDRELASGG- 311 (475)
Q Consensus 241 ~~~~~~~~~h~~~v~~l~~~--~~~l~sgs-~dg~I~iwd~~~~~~~~~----~~~-~h~~~V~~l~~s~~~~~lasg~- 311 (475)
.+.+..+..+ ..+.+++|+ ++.|++++ .++.|.+||+...+.... ... .....+.+++|+|++++|++++
T Consensus 119 ~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~ 197 (343)
T 1ri6_A 119 VGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE 197 (343)
T ss_dssp EEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred ccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC
Confidence 4455555443 357788885 56777776 899999999985343321 222 2345788999999999776555
Q ss_pred CCCcEEEEECCC--Cce--eEEEec---c---ccceeEEEECCCCCcEEEEecCCCCCeEEEEECC--C--CceeeeecC
Q 011916 312 NDNQLLVWNQHS--QQP--TLRLTE---H---TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS--N--GHQLNSVDT 377 (475)
Q Consensus 312 ~Dg~I~iwd~~~--~~~--~~~~~~---h---~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~--~--~~~~~~~~~ 377 (475)
.++.|.+||+.. ++. ...+.. . ...+..++|+|++++|++++. .++.|.+||+. + .+.+..+..
T Consensus 198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~--~~~~i~v~d~~~~~~~~~~~~~~~~ 275 (343)
T 1ri6_A 198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR--TASLITVFSVSEDGSVLSKEGFQPT 275 (343)
T ss_dssp TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec--CCCEEEEEEEcCCCCceEEeeeecC
Confidence 789999999953 432 222221 1 235668999999998887765 79999999998 3 344555555
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCc--eEEEecCCCcceEEEEECCCC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY--PSMA--KVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~--~~~~--~~~~l~~h~~~V~~l~~spdg 434 (475)
...+..++|+|+++.|+++ +..++.|.+|++ .+++ .+..+... ....+++|.++.
T Consensus 276 ~~~~~~~~~s~dg~~l~~~-~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~ 334 (343)
T 1ri6_A 276 ETQPRGFNVDHSGKYLIAA-GQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHE 334 (343)
T ss_dssp SSSCCCEEECTTSSEEEEE-CTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC
T ss_pred CCccceEEECCCCCEEEEe-cCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEccc
Confidence 5568999999999998884 346899999954 4553 34444432 345667776654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-20 Score=181.82 Aligned_cols=234 Identities=12% Similarity=0.110 Sum_probs=180.3
Q ss_pred EEcCCCCE-EEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeC-CCcEEEEECCCCCcc-EEEecC
Q 011916 216 QWTREGSY-ISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSR-DRNILQHDLRVSSDY-ICKLAG 290 (475)
Q Consensus 216 ~~spdg~~-la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg~I~iwd~~~~~~~-~~~~~~ 290 (475)
.|.+++++ ++++..++.|.+||+.+++.+..+..+...+ .++|+ ++++++++. ++.|.+||+.. +.. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~-~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL-EPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS-SSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC-CceeEEeccc
Confidence 45565554 6677788999999999999988887666666 88884 565655554 89999999984 444 566666
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCCC---cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCe-EEEEEC
Q 011916 291 HKSEVCGLKWSHDDRELASGGNDN---QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRC-IRFWNT 366 (475)
Q Consensus 291 h~~~V~~l~~s~~~~~lasg~~Dg---~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~-I~iwd~ 366 (475)
+.....+++|+|+|++|+++..++ .|.+||+.+++.+..+.. .....+++|+|+|+++++++. .++. |.+|++
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~--~~~~~i~~~~~ 158 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDR--SSANTVRRFKI 158 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEE--TTTTEEEEEEE
T ss_pred CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEec--CCCceEEEEEE
Confidence 666665599999999999655553 899999999988777664 445689999999998888765 5677 999998
Q ss_pred CCCcee-----eeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce---EEEecCCCcceEEEEECCCCCEEE
Q 011916 367 SNGHQL-----NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK---VSTLTGHSLRVLYLATSPDGQTIV 438 (475)
Q Consensus 367 ~~~~~~-----~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~---~~~l~~h~~~V~~l~~spdg~~l~ 438 (475)
.....+ ..+..+..+..++|+|+|++++++ +..++.|.+||+.+++. +..+..+ ..+..++|+|||++|+
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 159 DADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA-NLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVY 236 (331)
T ss_dssp CTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE-ETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEE
T ss_pred CCCCcEeecCCccccCCCCccceEECCCCCEEEEE-eCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEE
Confidence 764432 233456678999999999987764 55789999999999887 7777644 5678999999999776
Q ss_pred EEe-CCCCEEEEecCCCCC
Q 011916 439 TGA-GDETLRFWNVFPSLK 456 (475)
Q Consensus 439 s~s-~Dg~I~iW~~~~~~~ 456 (475)
.++ .++.|.+||+.++..
T Consensus 237 v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EECSSEEEEEEEETTTTEE
T ss_pred EEEcCCCEEEEEECCCCce
Confidence 654 578899999987665
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-21 Score=181.96 Aligned_cols=225 Identities=12% Similarity=0.109 Sum_probs=173.5
Q ss_pred EeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCc-cCCEEEEEEcCC
Q 011916 227 GTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGH-KSEVCGLKWSHD 303 (475)
Q Consensus 227 g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~~ 303 (475)
++.++.|++||+.+++... +..|...|.+++|+ +++|++++ ++.|.+||+...+........+ ...+.+++|+|+
T Consensus 18 ~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD 95 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred CCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence 4568999999999888764 45588899999995 67888876 7899999998414555555455 367899999999
Q ss_pred CCEEEEEeC--CC--cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC--CCCceeeeecC
Q 011916 304 DRELASGGN--DN--QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT--SNGHQLNSVDT 377 (475)
Q Consensus 304 ~~~lasg~~--Dg--~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~--~~~~~~~~~~~ 377 (475)
+++|++++. ++ .|.+|+..++. ...+..+ ..+..++|+|+++.+++++. .++.+++|++ .+++......+
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~--~~~~~~l~~~~~~~~~~~~~~~~ 171 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGI--RDQVFDIYSMDIDSGVETRLTHG 171 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEE--ETTEEEEEEEETTTCCEEECCCS
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEEC--CCCceEEEEEECCCCcceEcccC
Confidence 999999983 33 45555555554 3444433 34889999999998886665 7898888884 55655555566
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC-CCceEEEecCCCcceEEEEECCCCCEEEEEeCC-----------CC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP-SMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD-----------ET 445 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~-~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-----------g~ 445 (475)
...+.++.|+|+++.|+++ +..++.+.+|++. ....+..+..|...+..++|+|+|++|++++.+ +.
T Consensus 172 ~~~~~~~~~s~dg~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 250 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFN-SSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR 250 (297)
T ss_dssp SSCEEEEEECTTSSEEEEE-ECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred CCccccceECCCCCEEEEE-ecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence 7789999999999988874 4457889999886 566777888888899999999999999988776 56
Q ss_pred EEEEecCCCCCCC
Q 011916 446 LRFWNVFPSLKAP 458 (475)
Q Consensus 446 I~iW~~~~~~~~~ 458 (475)
|++||+..+....
T Consensus 251 l~~~d~~~~~~~~ 263 (297)
T 2ojh_A 251 VQLMDMDGGNVET 263 (297)
T ss_dssp EEEEETTSCSCEE
T ss_pred EEEEecCCCCcee
Confidence 9999998876543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-21 Score=212.64 Aligned_cols=272 Identities=11% Similarity=0.047 Sum_probs=212.6
Q ss_pred ceeEEecC-CC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCC-cEEEEEEcCCCCEEEEEeCCCeEE-EEECCCCeeeE
Q 011916 170 YLNLVDWS-SQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGD-SVCSVQWTREGSYISVGTNLGQVQ-VWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws-~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~-~V~~v~~spdg~~la~g~~dg~v~-iwd~~~~~~~~ 245 (475)
.+..++|+ |+ ..++.+.++.|++|+..+++...+. .+.. .+.+++|+ ||+.|++++.++.+. +|++.+++...
T Consensus 297 ~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~ 373 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK 373 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred ccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEcc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceE
Confidence 57889999 87 5566666999999999988866543 5566 89999999 999999999988898 99998776544
Q ss_pred EecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC---------
Q 011916 246 TFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN--------- 314 (475)
Q Consensus 246 ~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg--------- 314 (475)
+.+|...+..++| +++.|++++.++.|++||+. .+........|...+.+++|+|||++|++++.++
T Consensus 374 -l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~-tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~ 451 (1045)
T 1k32_A 374 -FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVM 451 (1045)
T ss_dssp -CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCE
T ss_pred -ecCCccceeeeEECCCCCEEEEECCCCeEEEEECC-CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCC
Confidence 4478889999999 47899999999999999998 4555566668999999999999999999887654
Q ss_pred -cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce----------------------
Q 011916 315 -QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ---------------------- 371 (475)
Q Consensus 315 -~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~---------------------- 371 (475)
.|++||+.+++ +..+..|...+..++|+|+|+.|++.+ .++...+|+......
T Consensus 452 ~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1045)
T 1k32_A 452 QAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS---YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 527 (1045)
T ss_dssp EEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE---SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred CeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe---cccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence 89999999887 667778888899999999999887754 344445554322111
Q ss_pred ---------------------eeeec-CCCCeeEEEEcCCCCeEEEE-----------EecCCCeEEEEECCCCceEEEe
Q 011916 372 ---------------------LNSVD-TGSQVCNLAWSKNVNELVST-----------HGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 372 ---------------------~~~~~-~~~~v~~l~~s~~~~~l~~~-----------~g~~dg~I~iwd~~~~~~~~~l 418 (475)
+..+. +.+.+..+.++|++..+++. .......|.+||+.+++... +
T Consensus 528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~-l 606 (1045)
T 1k32_A 528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-V 606 (1045)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE-E
T ss_pred cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE-e
Confidence 11111 33568899999999877741 12235578999998877533 3
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 419 TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 419 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
. ..+..++|||||++|++++.| .|++||+.++.
T Consensus 607 ~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 607 K---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E---EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred e---cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 2 568899999999999999877 89999998776
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.6e-20 Score=180.45 Aligned_cols=276 Identities=10% Similarity=0.033 Sum_probs=191.3
Q ss_pred EecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEecCC
Q 011916 174 VDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 174 l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~iwd~~~~~~~~~~~~h 250 (475)
++++++ . +++.+.++.|++||..+++....+..+....+..++|+|+|++++++ ..++.|.+||+.+++.+..+..+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~ 84 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 84 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcc
Confidence 344554 3 45556789999999999998888765433367899999999876554 56899999999999988777643
Q ss_pred C------CceEEEEe--CCCEEEEEeCC------------CcEEEEECCCCC--ccEEEecCccCCEEEEEEcCCCCEEE
Q 011916 251 Q------TRAGVLAW--NSRILSSGSRD------------RNILQHDLRVSS--DYICKLAGHKSEVCGLKWSHDDRELA 308 (475)
Q Consensus 251 ~------~~v~~l~~--~~~~l~sgs~d------------g~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~~~~~la 308 (475)
. ..+..++| ++++|++++.+ +.|.+||+.... ..+.... +...+.+++|+|+|+ ++
T Consensus 85 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 85 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS-LY 162 (349)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-EE
T ss_pred cccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-EE
Confidence 2 23667778 56788888865 899999997421 2223333 334688999999999 66
Q ss_pred EEeCCCcEEEEECCCCceeEEEecccc------------------------ceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 309 SGGNDNQLLVWNQHSQQPTLRLTEHTA------------------------AVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 309 sg~~Dg~I~iwd~~~~~~~~~~~~h~~------------------------~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
+++. .|++||+.+++.+..+..+.. ....+++++++........ ....+..+
T Consensus 163 ~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~~~~~~~~ 238 (349)
T 1jmx_B 163 VAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATAD--LLYGYLSV 238 (349)
T ss_dssp EESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCE--EEEEEEEE
T ss_pred EccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccc--cceeEEEE
Confidence 6544 499999999987776653320 3445667665532211100 11122224
Q ss_pred ECCCCceeee--ecCCCCeeEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 365 NTSNGHQLNS--VDTGSQVCNLAWSK-NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 365 d~~~~~~~~~--~~~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
|..+++.... -.....+..++|+| +++++++ + ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~--~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~ 313 (349)
T 1jmx_B 239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG--V--LNRLAKYDLKQRKLIKAANLD-HTYYCVAFDKKGDKLYLGG 313 (349)
T ss_dssp ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE--E--ESEEEEEETTTTEEEEEEECS-SCCCEEEECSSSSCEEEES
T ss_pred eccCCcEEecccccCCCcceeeEecCCCCCEEEE--E--cCeEEEEECccCeEEEEEcCC-CCccceEECCCCCEEEEec
Confidence 5544432111 12456788999999 9999988 4 789999999999888777643 3578999999999999888
Q ss_pred CCCCEEEEecCCCCCCCCc
Q 011916 442 GDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 442 ~Dg~I~iW~~~~~~~~~~~ 460 (475)
.++.|++||+.+.+....+
T Consensus 314 ~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 314 TFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp BSSEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEeccccceeeee
Confidence 8999999999887655543
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-21 Score=204.22 Aligned_cols=268 Identities=9% Similarity=0.046 Sum_probs=191.8
Q ss_pred ceeEEecCCC-CEEEEEc-C---------CeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 011916 170 YLNLVDWSSQ-NVLAVGL-G---------TCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWD 237 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~-~---------~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd 237 (475)
.+..++|||+ +.|+.+. + +.|++||+.+++...+... .+...+..++|+|||++||+++. +.|++||
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 5788999998 5455443 2 7899999999987444322 23445889999999999999987 7999999
Q ss_pred CCCCeeeEEecCCCCce------------------EEEEe--CCCEEEEEeCCC--------------------------
Q 011916 238 GTQCKRVRTFGGHQTRA------------------GVLAW--NSRILSSGSRDR-------------------------- 271 (475)
Q Consensus 238 ~~~~~~~~~~~~h~~~v------------------~~l~~--~~~~l~sgs~dg-------------------------- 271 (475)
+.+++.......+...+ .+++| +++.|++++.|+
T Consensus 141 ~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (723)
T 1xfd_A 141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK 220 (723)
T ss_dssp SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred CCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCC
Confidence 99988776665544333 78889 468888887543
Q ss_pred --------cEEEEECCCCCccEEEecCc------cCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCceeEEEec-
Q 011916 272 --------NILQHDLRVSSDYICKLAGH------KSEVCGLKWSHDDRELASGGN----DNQLLVWNQHSQQPTLRLTE- 332 (475)
Q Consensus 272 --------~I~iwd~~~~~~~~~~~~~h------~~~V~~l~~s~~~~~lasg~~----Dg~I~iwd~~~~~~~~~~~~- 332 (475)
.|.+||+.. +.....+..+ ...+..++|+|||++|++... +..|++||+.+++....+..
T Consensus 221 ~G~~~~~~~l~~~d~~~-~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~ 299 (723)
T 1xfd_A 221 AGSENPSISLHVIGLNG-PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (723)
T ss_dssp TTSCCCEEEEEEEESSS-SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred CCCCCCeeEEEEEECCC-CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec
Confidence 799999974 4433445443 567899999999998877653 35799999999887665544
Q ss_pred cccce----eEEEECCCCCcEEEE-ecCCCCC------eEEEEE-CCCCc--eeeeec-CCCCeeE-EEEcCCCCeEEEE
Q 011916 333 HTAAV----KAIAWSPHQSSLLAS-GGGTADR------CIRFWN-TSNGH--QLNSVD-TGSQVCN-LAWSKNVNELVST 396 (475)
Q Consensus 333 h~~~v----~~l~~sp~~~~ll~s-g~Gs~d~------~I~iwd-~~~~~--~~~~~~-~~~~v~~-l~~s~~~~~l~~~ 396 (475)
+...+ ..++|+|+|+.|++. +. .++ .|.+|| ..++. +...+. ....+.. ++|+|+|+.|+.+
T Consensus 300 ~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~ 377 (723)
T 1xfd_A 300 SEAWLHRQNEEPVFSKDGRKFFFIRAI--PQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL 377 (723)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEE--CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE
T ss_pred cCCEEeccCCCceEcCCCCeEEEEEec--ccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEE
Confidence 33444 388999999988875 33 556 677788 44444 144443 3344554 6999999999874
Q ss_pred EecCC--CeEEEEECCCCc--eEEEecC---CCcceEEEEECCCCCEEEEEeC
Q 011916 397 HGYSQ--NQIMVWKYPSMA--KVSTLTG---HSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 397 ~g~~d--g~I~iwd~~~~~--~~~~l~~---h~~~V~~l~~spdg~~l~s~s~ 442 (475)
+..+ +.+.||++.... ....+.. |...+..++|+|||++|+....
T Consensus 378 -~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 378 -STEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp -ESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred -EcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 3344 788999886432 3344543 6777899999999998887543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=209.47 Aligned_cols=272 Identities=8% Similarity=0.103 Sum_probs=197.9
Q ss_pred EEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCC---cEEEEEEcCCCCEEEEEeC---------CCeEEEEECC
Q 011916 173 LVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGD---SVCSVQWTREGSYISVGTN---------LGQVQVWDGT 239 (475)
Q Consensus 173 ~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~---~V~~v~~spdg~~la~g~~---------dg~v~iwd~~ 239 (475)
.+.|+++ .+++.+.++.|++||+.+++...+.. .+.. .+.+++|||||++|++++. ++.|++||+.
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~ 98 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS 98 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence 4789987 56666678999999999999877764 2222 3889999999999999876 7899999999
Q ss_pred CCeee--EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEE-ecCccCCE-----------------EE
Q 011916 240 QCKRV--RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICK-LAGHKSEV-----------------CG 297 (475)
Q Consensus 240 ~~~~~--~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V-----------------~~ 297 (475)
+++.+ ..+ ...+..++| +|+.|+.+. ++.|++||+... ..... ..++...| .+
T Consensus 99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g-~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~ 173 (719)
T 1z68_A 99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGD-PPFQITFNGRENKIFNGIPDWVYEEEMLATKYA 173 (719)
T ss_dssp TTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTS-CCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred CCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCC-CcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence 98773 222 245778888 568888875 789999999743 33322 22333323 48
Q ss_pred EEEcCCCCEEEEEeCCC----------------------------------cEEEEECCCCcee--EE------Eecccc
Q 011916 298 LKWSHDDRELASGGNDN----------------------------------QLLVWNQHSQQPT--LR------LTEHTA 335 (475)
Q Consensus 298 l~~s~~~~~lasg~~Dg----------------------------------~I~iwd~~~~~~~--~~------~~~h~~ 335 (475)
+.|||||++||+++.|. .|++||+.+++.. .. +..|..
T Consensus 174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~ 253 (719)
T 1z68_A 174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY 253 (719)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence 99999999999987652 7889999987653 12 235778
Q ss_pred ceeEEEECCCCCcEEEEec--CCCCCeEEEEE----CCCCceeeee-----cCCCCee-----EEEEcCCCCeEEEEEec
Q 011916 336 AVKAIAWSPHQSSLLASGG--GTADRCIRFWN----TSNGHQLNSV-----DTGSQVC-----NLAWSKNVNELVSTHGY 399 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~--Gs~d~~I~iwd----~~~~~~~~~~-----~~~~~v~-----~l~~s~~~~~l~~~~g~ 399 (475)
.+..++|+||++ ++++.. +.....|.+|| +.++++...+ .+...+. .+.|+|+|+.++.....
T Consensus 254 ~~~~~~~SpD~~-~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~ 332 (719)
T 1z68_A 254 YFSWLTWVTDER-VCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSD 332 (719)
T ss_dssp EEEEEEESSSSE-EEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEEC
T ss_pred eEEEeEEeCCCe-EEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEc
Confidence 899999999976 555432 11224689999 8887765554 2344555 78999999987764344
Q ss_pred CCC--eEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC-----CCEEEEecCC
Q 011916 400 SQN--QIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD-----ETLRFWNVFP 453 (475)
Q Consensus 400 ~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D-----g~I~iW~~~~ 453 (475)
.+| .|++||+.+++ ...+..+...|..+.++ +++.|+..+.+ +.+++|.+..
T Consensus 333 ~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~ 391 (719)
T 1z68_A 333 KDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISI 391 (719)
T ss_dssp TTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEEC
T ss_pred cCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeC
Confidence 455 67778887766 55677677778888777 88877776655 8899998864
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-20 Score=184.39 Aligned_cols=280 Identities=12% Similarity=0.092 Sum_probs=196.8
Q ss_pred CceeEEecCCC-C-EEEEEc-CC--eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 169 FYLNLVDWSSQ-N-VLAVGL-GT--CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 169 ~~v~~l~ws~~-~-~la~~~-~~--~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
.|+...+|+|+ . ++.++. ++ .|++||+.+++...+.. ++...+..+.|+|||+.|+++..++.|++||+.+++.
T Consensus 36 ~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~ 114 (388)
T 3pe7_A 36 NYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTE-GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE 114 (388)
T ss_dssp CCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCC-SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE
T ss_pred hhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeee-CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc
Confidence 44555789997 3 555555 45 59999999998877764 4444555678999999999999999999999999988
Q ss_pred eEEecCCCCceEEEEe----CCCEEEEE----------------------eCCCcEEEEECCCCCccEEEecCccCCEEE
Q 011916 244 VRTFGGHQTRAGVLAW----NSRILSSG----------------------SRDRNILQHDLRVSSDYICKLAGHKSEVCG 297 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~----~~~~l~sg----------------------s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 297 (475)
...+..+...+....| ++.+++.. ..+..|.+||+.. + ....+..+...+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~-g-~~~~l~~~~~~~~~ 192 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT-G-ESTVILQENQWLGH 192 (388)
T ss_dssp EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT-C-CEEEEEEESSCEEE
T ss_pred eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC-C-ceEEeecCCccccc
Confidence 7777767666654444 45666532 2446799999874 3 34455567778999
Q ss_pred EEEcC-CCCEEEEEeCC------CcEEEEECCCCceeEEEeccc--cceeEEEECCCCCcEEEEecC--CCCCeEEEEEC
Q 011916 298 LKWSH-DDRELASGGND------NQLLVWNQHSQQPTLRLTEHT--AAVKAIAWSPHQSSLLASGGG--TADRCIRFWNT 366 (475)
Q Consensus 298 l~~s~-~~~~lasg~~D------g~I~iwd~~~~~~~~~~~~h~--~~v~~l~~sp~~~~ll~sg~G--s~d~~I~iwd~ 366 (475)
+.|+| ||+.|+.+..+ ..|.++|...+.. ..+..+. ..+..++|+|+|+.|+..... ..+..|++||+
T Consensus 193 ~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 271 (388)
T 3pe7_A 193 PIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADP 271 (388)
T ss_dssp EEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECT
T ss_pred cEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEec
Confidence 99999 99999887753 3788888876544 3444444 357889999999988665431 11234999999
Q ss_pred CCCceeeeecCCC------CeeEEEEcCCCCeEEEEEe-------cCCCeEEEEECCCCceEEEecCCCc----------
Q 011916 367 SNGHQLNSVDTGS------QVCNLAWSKNVNELVSTHG-------YSQNQIMVWKYPSMAKVSTLTGHSL---------- 423 (475)
Q Consensus 367 ~~~~~~~~~~~~~------~v~~l~~s~~~~~l~~~~g-------~~dg~I~iwd~~~~~~~~~l~~h~~---------- 423 (475)
.+++......... ....+.|+|+|+.|+.+.. ..+..|++||+.+++. ..+..|..
T Consensus 272 ~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~ 350 (388)
T 3pe7_A 272 ETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-HRVARHDTSWKVFEGDRQ 350 (388)
T ss_dssp TTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-EEEEECCCCCCCBTTBSS
T ss_pred CCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-EEeccccCcccccccccc
Confidence 9987543322211 1223479999999886421 4567899999988764 44555555
Q ss_pred -ceEEEEECCCCCEEEEEe-CCCCEEEEecCC
Q 011916 424 -RVLYLATSPDGQTIVTGA-GDETLRFWNVFP 453 (475)
Q Consensus 424 -~V~~l~~spdg~~l~s~s-~Dg~I~iW~~~~ 453 (475)
.+..++|+|||+.|+.++ .+|...||.+.-
T Consensus 351 ~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 351 VTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred cCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 578899999999888765 478888887654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=198.42 Aligned_cols=266 Identities=11% Similarity=0.011 Sum_probs=189.1
Q ss_pred CceeEEecCCC-C-EEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCC--
Q 011916 169 FYLNLVDWSSQ-N-VLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN---LGQVQVWDGTQ-- 240 (475)
Q Consensus 169 ~~v~~l~ws~~-~-~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---dg~v~iwd~~~-- 240 (475)
..+..+.++++ + ++.++. ++.+.||++.+++..++.. .+...+.+++|+|| ++++++.. +....||.+..
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~-~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR-EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS-SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec-ccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence 45788899887 4 444555 8999999997777665542 33368999999999 77777764 45455654432
Q ss_pred -CeeeEEecCCCCceEEEEeCCC-EEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC----C
Q 011916 241 -CKRVRTFGGHQTRAGVLAWNSR-ILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND----N 314 (475)
Q Consensus 241 -~~~~~~~~~h~~~v~~l~~~~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D----g 314 (475)
+........+...+.+++++++ .+++.+.++.+.+||+. .+...... .+.. .+++|+|||++||+++.| +
T Consensus 100 ~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~-~g~~~~l~-~~~~--~~~~~spDG~~la~~~~~~~~~~ 175 (582)
T 3o4h_A 100 PGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALD-GGGLRELA-RLPG--FGFVSDIRGDLIAGLGFFGGGRV 175 (582)
T ss_dssp TTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE-TTEEEEEE-EESS--CEEEEEEETTEEEEEEEEETTEE
T ss_pred CCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEcc-CCcEEEee-cCCC--ceEEECCCCCEEEEEEEcCCCCe
Confidence 3322222233334556667774 44455555566699997 34433333 3333 789999999999988877 7
Q ss_pred cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC--eEEEEECCCCceeeee-cCCCCeeEEE------
Q 011916 315 QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR--CIRFWNTSNGHQLNSV-DTGSQVCNLA------ 385 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~--~I~iwd~~~~~~~~~~-~~~~~v~~l~------ 385 (475)
.|++||+.+++.. .+..|...+..++|+|||+.|+ ++. .++ .|++||+.+++.. .+ .+...+..+.
T Consensus 176 ~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~-~~~--~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~ 250 (582)
T 3o4h_A 176 SLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTA-GLE--TAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITW 250 (582)
T ss_dssp EEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEE-EEE--CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEE
T ss_pred EEEEEcCCCCCce-EeecCCCccccceECCCCCEEE-Ecc--CCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccc
Confidence 8999999988754 6778889999999999999877 433 577 8999999999887 43 3444566666
Q ss_pred --EcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCC---EEEEecCC
Q 011916 386 --WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDET---LRFWNVFP 453 (475)
Q Consensus 386 --~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~---I~iW~~~~ 453 (475)
|+|+|..+++ +..++.+++|++ ++.+. .+.+.|.+++|+ ||+++++++.+.+ |.+|+...
T Consensus 251 ~~~spdg~~~~~--~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 251 LGYLPDGRLAVV--ARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEECTTSCEEEE--EEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred eeEcCCCcEEEE--EEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 9999955555 668999999999 55443 345678999999 9999998887754 66666543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-19 Score=179.29 Aligned_cols=264 Identities=9% Similarity=0.014 Sum_probs=185.1
Q ss_pred CeEEEEEC--CCCcEEEEeeC--CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeeeEEecCC-CCceEEEEeC-
Q 011916 188 TCVYLWTA--SNSKVTRLCDL--GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT-QCKRVRTFGGH-QTRAGVLAWN- 260 (475)
Q Consensus 188 ~~V~lw~~--~~~~~~~~~~~--~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~-~~~~~~~~~~h-~~~v~~l~~~- 260 (475)
+.|++|++ .++++..+... .....+..++|+|+|++|++++.+ .|.+|++. +++........ .+....++|+
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp 92 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADT 92 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence 56887764 56766544321 334567899999999999999887 99999997 77765433211 1224456664
Q ss_pred -CCE--EEEEe-------------CCCcEEEEECCCCCccEEEec----CccCCEEEEEEcCCCCEEEEEeC-CCcEEEE
Q 011916 261 -SRI--LSSGS-------------RDRNILQHDLRVSSDYICKLA----GHKSEVCGLKWSHDDRELASGGN-DNQLLVW 319 (475)
Q Consensus 261 -~~~--l~sgs-------------~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iw 319 (475)
++. ++++. .++.+.+|++...+.....+. .+...+.+++|+|||++|++++. ++.|++|
T Consensus 93 dg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~ 172 (365)
T 1jof_A 93 NTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTH 172 (365)
T ss_dssp CCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEE
Confidence 563 44543 689999999975444433332 24567999999999998887764 6799999
Q ss_pred ECC-CCcee--EEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECC--CCceee---ee---cCC----C---
Q 011916 320 NQH-SQQPT--LRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS--NGHQLN---SV---DTG----S--- 379 (475)
Q Consensus 320 d~~-~~~~~--~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~--~~~~~~---~~---~~~----~--- 379 (475)
|+. +++.. ..+. .|...+..++|+|+|++++++.. .++.|.+|++. +++... .+ ..+ .
T Consensus 173 ~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~--~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~ 250 (365)
T 1jof_A 173 RKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPET 250 (365)
T ss_dssp EECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTT
T ss_pred EECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC--CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccc
Confidence 998 66543 2333 23567899999999998877754 67899999765 565431 22 111 1
Q ss_pred ----CeeEEE-EcCCCCeEEEEEecCC----CeEEEEECC-CCceEE---EecCCCcceEEEEECC---CCCEEEEEeCC
Q 011916 380 ----QVCNLA-WSKNVNELVSTHGYSQ----NQIMVWKYP-SMAKVS---TLTGHSLRVLYLATSP---DGQTIVTGAGD 443 (475)
Q Consensus 380 ----~v~~l~-~s~~~~~l~~~~g~~d----g~I~iwd~~-~~~~~~---~l~~h~~~V~~l~~sp---dg~~l~s~s~D 443 (475)
.+..++ |+|+|++|+++....+ +.|.+|++. +++... .+..+...+..++|+| ||++|++++.+
T Consensus 251 ~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~ 330 (365)
T 1jof_A 251 GKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQ 330 (365)
T ss_dssp SSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSS
T ss_pred ccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcC
Confidence 478899 9999999987533333 289999996 555433 2334555677899999 89999999875
Q ss_pred -CCEEEEecCCC
Q 011916 444 -ETLRFWNVFPS 454 (475)
Q Consensus 444 -g~I~iW~~~~~ 454 (475)
+.|.+|++...
T Consensus 331 ~~~v~v~~~~~~ 342 (365)
T 1jof_A 331 EGWLEIYRWKDE 342 (365)
T ss_dssp SCEEEEEEEETT
T ss_pred CCeEEEEEEchh
Confidence 89999999876
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-20 Score=197.55 Aligned_cols=234 Identities=10% Similarity=-0.010 Sum_probs=175.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEecCCC-CceEEEEeCC-CEEEEEeC---CCcEEEEECCC--
Q 011916 209 GDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKRVRTFGGHQ-TRAGVLAWNS-RILSSGSR---DRNILQHDLRV-- 280 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~~~~~~~h~-~~v~~l~~~~-~~l~sgs~---dg~I~iwd~~~-- 280 (475)
...|.+++|+|||++||+++. ||++.||++.+++..+ +..|. ..+..++|++ +++++++. +....+|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~ 99 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSR 99 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccC
Confidence 357999999999999999887 9999999997666544 44444 6899999975 45566654 45567766654
Q ss_pred CCccEEEecCccCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecC-CCC
Q 011916 281 SSDYICKLAGHKSEVCGLKWSHDDRE-LASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGG-TAD 358 (475)
Q Consensus 281 ~~~~~~~~~~h~~~V~~l~~s~~~~~-lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G-s~d 358 (475)
.+... .+..+. .+...+|+|+|+. +++.+.++.+.+||+.+++...... +.. .+++|+|||+.|++++.. ...
T Consensus 100 ~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~ 174 (582)
T 3o4h_A 100 PGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGR 174 (582)
T ss_dssp TTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTE
T ss_pred CCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCC
Confidence 33333 333322 3446688888753 3334444556699999887654443 333 889999999987765420 011
Q ss_pred CeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC--eEEEEECCCCceEEEecCCCcceEEEE-------
Q 011916 359 RCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN--QIMVWKYPSMAKVSTLTGHSLRVLYLA------- 429 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~~~~~~l~~h~~~V~~l~------- 429 (475)
+.|++||+.+++......+...+..++|+|||+.|++ +..++ .|++||+.+++.. .+.+|...+..++
T Consensus 175 ~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~--~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 251 (582)
T 3o4h_A 175 VSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAG--LETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWL 251 (582)
T ss_dssp EEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEE--EECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred eEEEEEcCCCCCceEeecCCCccccceECCCCCEEEE--ccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccce
Confidence 7899999999987766567778899999999999995 66677 8999999998887 7788888777777
Q ss_pred -ECCCCCEEEEEeCCCCEEEEec
Q 011916 430 -TSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 430 -~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
|+|||.++++++.|+++++|++
T Consensus 252 ~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 252 GYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EECTTSCEEEEEEETTEEEEEET
T ss_pred eEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999999999999999999999
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-19 Score=174.79 Aligned_cols=240 Identities=10% Similarity=0.084 Sum_probs=184.6
Q ss_pred eeEEecCCCC--EEEEEc-CCeEEEEECCCCcEEEEeeCCCC----CcEEEEEEcCCCCEEEEEe------------CCC
Q 011916 171 LNLVDWSSQN--VLAVGL-GTCVYLWTASNSKVTRLCDLGPG----DSVCSVQWTREGSYISVGT------------NLG 231 (475)
Q Consensus 171 v~~l~ws~~~--~la~~~-~~~V~lw~~~~~~~~~~~~~~~~----~~V~~v~~spdg~~la~g~------------~dg 231 (475)
+..++|+++. +++++. ++.|++||+.+++....+..++. ..+.+++|+|+|++|+++. .++
T Consensus 36 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 115 (337)
T 1pby_B 36 PMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115 (337)
T ss_dssp CCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCc
Confidence 4568899873 444444 67999999999998877765431 2567899999999999886 579
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS 309 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las 309 (475)
.|.+||+.+++.+..+.. ...+.+++| ++++|+++ ++.|.+||+. .++....+..+.. ...+.|+|++..|+.
T Consensus 116 ~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~-~~~~~~~~~~~~~-~~~~~~s~dg~~l~~ 190 (337)
T 1pby_B 116 RVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPE-AGTLVEDKPIQSW-EAETYAQPDVLAVWN 190 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETT-TTEEEEEECSTTT-TTTTBCCCBCCCCCC
T ss_pred eEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECC-CCcEeeeeecccc-CCCceeCCCccEEee
Confidence 999999999988887764 345677778 46777777 6899999998 4555555554331 112378999887765
Q ss_pred EeCCC------------------------cEEEEECCCCcee-EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 310 GGNDN------------------------QLLVWNQHSQQPT-LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 310 g~~Dg------------------------~I~iwd~~~~~~~-~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
.+.++ .|.+||+.+++.. ..+..+...+.+++|+|++++++++ ++.|.+|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-----~~~v~~~ 265 (337)
T 1pby_B 191 QHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-----YNVLESF 265 (337)
T ss_dssp CCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-----ESEEEEE
T ss_pred eccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-----CCeEEEE
Confidence 54332 4689999988764 2334466678899999999977764 6899999
Q ss_pred ECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 365 NTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 365 d~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
|+.+++.+..+..+..+.+++|+|++++|++ +..++.|.+||+.+++.+..+..+.
T Consensus 266 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~--~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 266 DLEKNASIKRVPLPHSYYSVNVSTDGSTVWL--GGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp ETTTTEEEEEEECSSCCCEEEECTTSCEEEE--ESBSSEEEEEETTTCCEEEEEECGG
T ss_pred ECCCCcCcceecCCCceeeEEECCCCCEEEE--EcCCCcEEEEECcCCcEEEEEEcCC
Confidence 9999999988887888999999999999988 5668999999999999888886553
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-18 Score=169.34 Aligned_cols=242 Identities=11% Similarity=0.087 Sum_probs=169.6
Q ss_pred eeEEecCCCC-EEEEEc---CCeEEEEECCCCcEEEEee-CCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC-C--
Q 011916 171 LNLVDWSSQN-VLAVGL---GTCVYLWTASNSKVTRLCD-LGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQ-C-- 241 (475)
Q Consensus 171 v~~l~ws~~~-~la~~~---~~~V~lw~~~~~~~~~~~~-~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~-~-- 241 (475)
...++|+|+. +++++. ++.|++|++.+++...+.. ..+...+..++|+|+|++|++++ .++.|.+|++.. +
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 3458899874 666655 4799999998877544433 13566788999999999998888 679999999863 2
Q ss_pred eeeEEecC---------CCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccE--EEecC-ccCCEEEEEEcCCCCEE
Q 011916 242 KRVRTFGG---------HQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYI--CKLAG-HKSEVCGLKWSHDDREL 307 (475)
Q Consensus 242 ~~~~~~~~---------h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~--~~~~~-h~~~V~~l~~s~~~~~l 307 (475)
+.+..+.. +...+.+++|+ ++++++...++.|.+|++...+... ..+.. ....+..++|+|||++|
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l 201 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYA 201 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEE
Confidence 33333322 12347788884 5766666778999999998434322 12222 23367889999999966
Q ss_pred EE-EeCCCcEEEEECCC--Cce--eEEEeccc------cceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-C--ceee
Q 011916 308 AS-GGNDNQLLVWNQHS--QQP--TLRLTEHT------AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-G--HQLN 373 (475)
Q Consensus 308 as-g~~Dg~I~iwd~~~--~~~--~~~~~~h~------~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~--~~~~ 373 (475)
++ +..++.|.+|++.. ++. +..+.... ..+..++|+|+|++|+++.. .++.|.+|++.. + +.+.
T Consensus 202 ~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~--~~~~v~v~~~~~~g~~~~~~ 279 (347)
T 3hfq_A 202 FLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR--GYNTLAVFAVTADGHLTLIQ 279 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE--TTTEEEEEEECGGGCEEEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC--CCCEEEEEEECCCCcEEEeE
Confidence 66 45678999999874 442 22332222 45889999999998877765 689999999873 2 3444
Q ss_pred eecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEE--CCCCceE
Q 011916 374 SVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWK--YPSMAKV 415 (475)
Q Consensus 374 ~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd--~~~~~~~ 415 (475)
.+.. +..+..++|+|+|++|+++ +..++.|.+|+ ..+++..
T Consensus 280 ~~~~~~~~~~~~~~spdg~~l~v~-~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 280 QISTEGDFPRDFDLDPTEAFVVVV-NQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp EEECSSSCCCEEEECTTSSEEEEE-ETTTTEEEEEEECTTTCCEE
T ss_pred EEecCCCCcCeEEECCCCCEEEEE-EcCCCcEEEEEEeCCCCeEE
Confidence 4443 5568999999999998884 44568999994 4555543
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=183.70 Aligned_cols=250 Identities=13% Similarity=0.162 Sum_probs=175.6
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------eeeEE-----ecCCCC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC----------KRVRT-----FGGHQT 252 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~----------~~~~~-----~~~h~~ 252 (475)
+.|++|+.... .+...+..+++++++.++++++.+| ++||+.... ..+.. ...+..
T Consensus 23 ~~vri~~~~~~--------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPEE--------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CEEECSCCCSS--------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeEEecCCccc--------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 56777765311 1234678999999999999999987 888874211 01111 113566
Q ss_pred ceEEEEeC--CCEEE----EEeCCCcEEEEECCCC-----C--c---cEEEecCccCCEEEEEEcCC-CCEEEEEeCCCc
Q 011916 253 RAGVLAWN--SRILS----SGSRDRNILQHDLRVS-----S--D---YICKLAGHKSEVCGLKWSHD-DRELASGGNDNQ 315 (475)
Q Consensus 253 ~v~~l~~~--~~~l~----sgs~dg~I~iwd~~~~-----~--~---~~~~~~~h~~~V~~l~~s~~-~~~lasg~~Dg~ 315 (475)
.|.+++|+ +++|+ +|+.|+.|++||++.. . . ....+.+|...|.+++|+|+ +++|++++.||+
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 79999995 67888 7889999999998632 1 1 24556779999999999997 889999999999
Q ss_pred EEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC--------CCCeeEEEEc
Q 011916 316 LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT--------GSQVCNLAWS 387 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~--------~~~v~~l~~s 387 (475)
|++||++++..+.....|...|.+++|+|+|++|++.+ .|+.|++||++ ++....+.. ...+.++.|+
T Consensus 174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs---~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~ 249 (434)
T 2oit_A 174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGK---QNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWI 249 (434)
T ss_dssp EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEE---TTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEE
T ss_pred EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEc---CCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEe
Confidence 99999999877777778999999999999999666533 79999999998 555554421 1278999999
Q ss_pred CCCCeEEEEEecCCC------eEEEEECCCCc-----eEEEec-------CCCcceEEEEECCCCCEEEEEeC-CCCEEE
Q 011916 388 KNVNELVSTHGYSQN------QIMVWKYPSMA-----KVSTLT-------GHSLRVLYLATSPDGQTIVTGAG-DETLRF 448 (475)
Q Consensus 388 ~~~~~l~~~~g~~dg------~I~iwd~~~~~-----~~~~l~-------~h~~~V~~l~~spdg~~l~s~s~-Dg~I~i 448 (475)
+++.++++.. ..+| .+++|++.... ....+. +...+-..+.+-+|.+++++++. .+.|.+
T Consensus 250 ~~~~~l~~~~-~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~v 328 (434)
T 2oit_A 250 GTYVFAIVYA-AADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSI 328 (434)
T ss_dssp ETTEEEEEEE-ETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEE
T ss_pred cCceEEEEEc-cCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeE
Confidence 9887776643 3343 38999997642 112221 11222233444466666665544 444555
Q ss_pred Eec
Q 011916 449 WNV 451 (475)
Q Consensus 449 W~~ 451 (475)
...
T Consensus 329 l~~ 331 (434)
T 2oit_A 329 LAR 331 (434)
T ss_dssp EEE
T ss_pred EEe
Confidence 554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-17 Score=163.85 Aligned_cols=256 Identities=13% Similarity=0.091 Sum_probs=174.8
Q ss_pred eeEEecCCC-C-EEEEEcC----CeEEEEECCC--CcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC
Q 011916 171 LNLVDWSSQ-N-VLAVGLG----TCVYLWTASN--SKVTRLCDL-GPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQ 240 (475)
Q Consensus 171 v~~l~ws~~-~-~la~~~~----~~V~lw~~~~--~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~ 240 (475)
...++|+|+ + +++++.+ +.|.+|++.. ++...+... .+......+++ ++++|+++. .++.|.+|++..
T Consensus 52 p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~ 129 (361)
T 3scy_A 52 PSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQ 129 (361)
T ss_dssp CCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCT
T ss_pred CceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCC
Confidence 445889987 4 4444443 7999998765 555444332 34567788888 888887776 578999999875
Q ss_pred CeeeEEe------cC--------CCCceEEEEeC--CCEEEEE-eCCCcEEEEECCCCCc------c------EEEecCc
Q 011916 241 CKRVRTF------GG--------HQTRAGVLAWN--SRILSSG-SRDRNILQHDLRVSSD------Y------ICKLAGH 291 (475)
Q Consensus 241 ~~~~~~~------~~--------h~~~v~~l~~~--~~~l~sg-s~dg~I~iwd~~~~~~------~------~~~~~~h 291 (475)
...+..+ .+ +...+.+++|+ +++|+++ ..++.|.+|++..... . ......+
T Consensus 130 ~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 209 (361)
T 3scy_A 130 DGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP 209 (361)
T ss_dssp TSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT
T ss_pred CCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCC
Confidence 4332211 11 12345778884 6655554 4589999999875442 2 1223344
Q ss_pred cCCEEEEEEcCCCCEEEEEe-CCCcEEEEECCCCce--eEEEec---cccceeEEEECCCCCcEEEEecCCC-CCeEEEE
Q 011916 292 KSEVCGLKWSHDDRELASGG-NDNQLLVWNQHSQQP--TLRLTE---HTAAVKAIAWSPHQSSLLASGGGTA-DRCIRFW 364 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~-~Dg~I~iwd~~~~~~--~~~~~~---h~~~v~~l~~sp~~~~ll~sg~Gs~-d~~I~iw 364 (475)
...+..++|+|||++|++++ .++.|.+||+.+++. +..+.. +......++|+|+|++|+++.. . ++.|.+|
T Consensus 210 ~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~--~~~~~i~v~ 287 (361)
T 3scy_A 210 GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR--LKADGVAIF 287 (361)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC--SSSCEEEEE
T ss_pred CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC--CCCCEEEEE
Confidence 56688999999999888777 689999999987654 222322 3345679999999998888764 4 6899999
Q ss_pred ECC--CCc--eeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC--CCCceEEEec-CCCcceEEEEEC
Q 011916 365 NTS--NGH--QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY--PSMAKVSTLT-GHSLRVLYLATS 431 (475)
Q Consensus 365 d~~--~~~--~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~--~~~~~~~~l~-~h~~~V~~l~~s 431 (475)
++. +++ .+..+..+..+..++|+|+|++|+++ +..++.|.+|++ .+++...... .+...+.|+.|.
T Consensus 288 ~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~-~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVA-CRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEE-ETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred EEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEE-ECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 985 455 44445556678899999999998885 446789999654 4565543332 244568888885
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-17 Score=160.70 Aligned_cols=242 Identities=13% Similarity=0.144 Sum_probs=188.9
Q ss_pred CCcEEEEEEcCCCCEEEEEeCC------------------------CeEEEEECCCCeeeEEec-CCCCceEEEEeC--C
Q 011916 209 GDSVCSVQWTREGSYISVGTNL------------------------GQVQVWDGTQCKRVRTFG-GHQTRAGVLAWN--S 261 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~d------------------------g~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~ 261 (475)
-+.+.+|+++++|+++++...+ +.|.+||..+++.+..+. ++-.....++++ +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3679999999999988888777 479999999898877665 445678888885 6
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEe---------cCccCCEEEEEEcC-CCCEEEEEe-CCCcEEEEECCCCceeEEE
Q 011916 262 RILSSGSRDRNILQHDLRVSSDYICKL---------AGHKSEVCGLKWSH-DDRELASGG-NDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~~~~~~---------~~h~~~V~~l~~s~-~~~~lasg~-~Dg~I~iwd~~~~~~~~~~ 330 (475)
+++++...++.|.+||.......+..+ ..+.....+|+++| ++.++++.+ .++.|++|| ..++.+..+
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~ 181 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW 181 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence 788888889999999986332244444 34455789999999 788888876 689999999 556666666
Q ss_pred ecc----------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeeEEEEcC------CCC
Q 011916 331 TEH----------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---TGSQVCNLAWSK------NVN 391 (475)
Q Consensus 331 ~~h----------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~------~~~ 391 (475)
... -.....|+++|++..++++.. .++.|++||..+++.+..+. ....+..++|+| +++
T Consensus 182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~ 259 (329)
T 3fvz_A 182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK 259 (329)
T ss_dssp CEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence 422 234789999999666877765 78999999999899888874 446788999999 332
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEec---CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLT---GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.+++ ...++.|++|++.+++.+..+. ++...+..|+++|+|.++++...++.|++|++....
T Consensus 260 ~~v~--~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 260 PYFG--DQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp CCTT--CSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred EEec--cCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 2222 3345689999999999988874 577779999999999888888889999999987543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-19 Score=173.92 Aligned_cols=283 Identities=12% Similarity=0.096 Sum_probs=187.0
Q ss_pred ceeEEecCCC-CEEEEE-cC---CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 170 YLNLVDWSSQ-NVLAVG-LG---TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~-~~---~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
++..++|+|+ ..++.. .. ..|++|++.+++...+.. ++......+.|+|||++|+.++.++.|.+||+.+++..
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTE-GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCC-SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeec-CCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 4556889987 444443 32 379999999988766543 22222334789999999999999999999999988776
Q ss_pred EEecCCCCceEE---E----------------Ee--CCCEEEEE-----eCCCcEEEEECCCCCccEEEecCccCCEEEE
Q 011916 245 RTFGGHQTRAGV---L----------------AW--NSRILSSG-----SRDRNILQHDLRVSSDYICKLAGHKSEVCGL 298 (475)
Q Consensus 245 ~~~~~h~~~v~~---l----------------~~--~~~~l~sg-----s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 298 (475)
.....+...... + .| +++.++.+ ..+..|.+||+.. +.. ..+..+...+..+
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~-g~~-~~~~~~~~~~~~~ 193 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIET-GEL-EVIHQDTAWLGHP 193 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTT-CCE-EEEEEESSCEEEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCC-CcE-EeeccCCcccccc
Confidence 665544442222 1 12 22333322 3556899999873 333 3333567789999
Q ss_pred EEcC-CCCEEEEEeCC------CcEEEEECCCCceeEEEecc--ccceeEEEECCCCCcEEEEec--CCCCCeEEEEECC
Q 011916 299 KWSH-DDRELASGGND------NQLLVWNQHSQQPTLRLTEH--TAAVKAIAWSPHQSSLLASGG--GTADRCIRFWNTS 367 (475)
Q Consensus 299 ~~s~-~~~~lasg~~D------g~I~iwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~ll~sg~--Gs~d~~I~iwd~~ 367 (475)
.|+| +++.|+..+.+ ..|.+||+..++.. .+..+ ...+..++|+|+|+.|++... +..++.|++||+.
T Consensus 194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTT
T ss_pred eECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECC
Confidence 9999 78877776643 36899998766533 33333 235788999999998777642 1112559999999
Q ss_pred CCceeeeecCCCCeeEEEEcC-CCCeEEEEEe--------------cCCCeEEEEECCCCceEEEecCCCc---------
Q 011916 368 NGHQLNSVDTGSQVCNLAWSK-NVNELVSTHG--------------YSQNQIMVWKYPSMAKVSTLTGHSL--------- 423 (475)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~~g--------------~~dg~I~iwd~~~~~~~~~l~~h~~--------- 423 (475)
+++......... .. +.|+| +|+.+++... ..+..|++||+.+++.. .+..+..
T Consensus 273 ~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~ 349 (396)
T 3c5m_A 273 TLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDR 349 (396)
T ss_dssp TCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBS
T ss_pred CCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCccccccccc
Confidence 887654433322 33 89999 9997776321 13478999999877643 3444443
Q ss_pred --ceEEEEECCCCCEEEEEeC-CCCEEEEecCCCCCCCC
Q 011916 424 --RVLYLATSPDGQTIVTGAG-DETLRFWNVFPSLKAPA 459 (475)
Q Consensus 424 --~V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~~~~~~~ 459 (475)
.+..++|+|||+.|+.++. ++...+|.+........
T Consensus 350 ~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 350 QITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred cCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 2567899999998887765 56777777654443333
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-19 Score=190.24 Aligned_cols=280 Identities=11% Similarity=0.102 Sum_probs=192.2
Q ss_pred eeEEecCCC-CEEEEEc----------CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 171 LNLVDWSSQ-NVLAVGL----------GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~----------~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+..++|||+ +.|+.+. ++.|++||+.+++......+ ...+.+++|+|||+.||++. ++.|++|++.
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l--~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL--PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC--CSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec--CcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 678999997 5555443 48999999999876211111 25688999999999999986 6899999998
Q ss_pred CCeeeEEe-cCCCCce-----------------EEEEe--CCCEEEEEeCCC----------------------------
Q 011916 240 QCKRVRTF-GGHQTRA-----------------GVLAW--NSRILSSGSRDR---------------------------- 271 (475)
Q Consensus 240 ~~~~~~~~-~~h~~~v-----------------~~l~~--~~~~l~sgs~dg---------------------------- 271 (475)
+++..... .++...| .+++| +|+.|++++.|.
T Consensus 139 ~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g 218 (719)
T 1z68_A 139 GDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAG 218 (719)
T ss_dssp TSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTT
T ss_pred CCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCC
Confidence 88765433 2333222 47888 568898887552
Q ss_pred ------cEEEEECCCCCccE---E-----EecCccCCEEEEEEcCCCCEEEEEeCC----CcEEEEE----CCCCceeEE
Q 011916 272 ------NILQHDLRVSSDYI---C-----KLAGHKSEVCGLKWSHDDRELASGGND----NQLLVWN----QHSQQPTLR 329 (475)
Q Consensus 272 ------~I~iwd~~~~~~~~---~-----~~~~h~~~V~~l~~s~~~~~lasg~~D----g~I~iwd----~~~~~~~~~ 329 (475)
.|.+||+.. +... . .+.+|...+..++|+||++++++.... ..|.+|| +.+++....
T Consensus 219 ~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 219 AKNPVVRIFIIDTTY-PAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp SCCCEEEEEEEESSC-HHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred CCCCeeEEEEEECCC-CCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 788999973 3321 1 123577889999999998777775433 2488999 777765443
Q ss_pred E----ecccccee-----EEEECCCCCcEEEE-ecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec
Q 011916 330 L----TEHTAAVK-----AIAWSPHQSSLLAS-GGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 330 ~----~~h~~~v~-----~l~~sp~~~~ll~s-g~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
+ ..|...+. .++|+|+|+.++.. ........|.+||+.+++..........+..+.++ +++.|+.+ +.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~-~~ 375 (719)
T 1z68_A 298 QEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYS-SN 375 (719)
T ss_dssp GEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEE-ES
T ss_pred EecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEE-Ee
Confidence 3 35666676 89999999977653 32222347888898877744333344567777777 88888775 33
Q ss_pred C----CCeEEEEECCC--Cc-eEEEecC----CCcceEEEEECCCCCEEEE-EeCC--CCEEEEecCCCCC
Q 011916 400 S----QNQIMVWKYPS--MA-KVSTLTG----HSLRVLYLATSPDGQTIVT-GAGD--ETLRFWNVFPSLK 456 (475)
Q Consensus 400 ~----dg~I~iwd~~~--~~-~~~~l~~----h~~~V~~l~~spdg~~l~s-~s~D--g~I~iW~~~~~~~ 456 (475)
. ++.+.+|.+.. +. ....+.. |...+..+.|+||+++|+. ++.+ ..+.+|++.+++.
T Consensus 376 ~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~ 446 (719)
T 1z68_A 376 EFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQE 446 (719)
T ss_dssp CGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCE
T ss_pred cCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCE
Confidence 3 47788887653 32 2334432 6677889999999987774 4433 4688998876653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-17 Score=178.97 Aligned_cols=274 Identities=12% Similarity=0.155 Sum_probs=184.8
Q ss_pred EEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCC-----cEEEEEEcCCCCEEEEEeCC---------CeEEEEE
Q 011916 173 LVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGD-----SVCSVQWTREGSYISVGTNL---------GQVQVWD 237 (475)
Q Consensus 173 ~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~-----~V~~v~~spdg~~la~g~~d---------g~v~iwd 237 (475)
.+.|+++ .+++.+ ++.|++||+.+++...++. .+.. ....++|||||++|+.++.+ +.+.+||
T Consensus 21 ~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d 98 (740)
T 4a5s_A 21 SLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (740)
T ss_dssp CEEECSSSEEEEEE-TTEEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCCCcEEEEc-CCcEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEE
Confidence 5899998 455555 9999999999999877765 3332 22458899999999999876 5677999
Q ss_pred CCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCE-----------------EEE
Q 011916 238 GTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEV-----------------CGL 298 (475)
Q Consensus 238 ~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----------------~~l 298 (475)
+.+++.. .+..|...+...+| +|+.|+.+ .++.|.+||+...........++...+ ..+
T Consensus 99 ~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~ 176 (740)
T 4a5s_A 99 LNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSAL 176 (740)
T ss_dssp TTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCE
T ss_pred CCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcce
Confidence 9998865 46677788999999 46888887 468999999974332211222333323 348
Q ss_pred EEcCCCCEEEEEeCCC------------------------------------cEEEEECCC---Cc--eeEEEe------
Q 011916 299 KWSHDDRELASGGNDN------------------------------------QLLVWNQHS---QQ--PTLRLT------ 331 (475)
Q Consensus 299 ~~s~~~~~lasg~~Dg------------------------------------~I~iwd~~~---~~--~~~~~~------ 331 (475)
.|||||+.||.++.|. .|++||+.+ ++ ....+.
T Consensus 177 ~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~ 256 (740)
T 4a5s_A 177 WWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASML 256 (740)
T ss_dssp EECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHH
T ss_pred EECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCC
Confidence 9999999999875321 488899988 73 233343
Q ss_pred ccccceeEEEECCCCCcEEEEec-CCCCCeEEEEECCCCc----eee--e---ecCCCCe-----eEEEEcCCCCeEEEE
Q 011916 332 EHTAAVKAIAWSPHQSSLLASGG-GTADRCIRFWNTSNGH----QLN--S---VDTGSQV-----CNLAWSKNVNELVST 396 (475)
Q Consensus 332 ~h~~~v~~l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~~----~~~--~---~~~~~~v-----~~l~~s~~~~~l~~~ 396 (475)
+|...+..++|+|||+.++.... +..+..|.+||+.+++ +.. . ..+...+ ....|+|||+.++..
T Consensus 257 ~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~ 336 (740)
T 4a5s_A 257 IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKI 336 (740)
T ss_dssp TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEE
T ss_pred CCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEE
Confidence 27778999999999985554422 2234579999999987 221 1 1233333 378999999988732
Q ss_pred EecCC--CeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEE-EeC----CCCEEEEecC
Q 011916 397 HGYSQ--NQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVT-GAG----DETLRFWNVF 452 (475)
Q Consensus 397 ~g~~d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s-~s~----Dg~I~iW~~~ 452 (475)
....+ ..|++||..+++.. .++.....|..+.. +|++.|+. +.. .+...||.+.
T Consensus 337 ~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~ 397 (740)
T 4a5s_A 337 ISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQ 397 (740)
T ss_dssp EECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred EEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEE
Confidence 23344 46888898776544 45545555666542 34665554 443 2344555443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-18 Score=166.47 Aligned_cols=262 Identities=14% Similarity=0.054 Sum_probs=181.4
Q ss_pred EEECCCCcEEEEeeCCCCCcEEE-----EEEcCCCCEEEEEeC-CC--eEEEEECCCCeeeEEecCCCCceEEEEe--CC
Q 011916 192 LWTASNSKVTRLCDLGPGDSVCS-----VQWTREGSYISVGTN-LG--QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NS 261 (475)
Q Consensus 192 lw~~~~~~~~~~~~~~~~~~V~~-----v~~spdg~~la~g~~-dg--~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~ 261 (475)
.++..++.....+. .+...... .+|+|||++|++++. +| .|.+||+.+++......++...+..+.| ++
T Consensus 14 ~~~~~~g~~~~~lt-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg 92 (388)
T 3pe7_A 14 YQDASTGAQVTRLT-PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD 92 (388)
T ss_dssp EECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS
T ss_pred EecCCCCcceEEec-CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC
Confidence 34666666555554 44444555 789999999999887 66 4888899999888777777666655566 57
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEE--EcCCCCEEEEE----------------------eCCCcEE
Q 011916 262 RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLK--WSHDDRELASG----------------------GNDNQLL 317 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~--~s~~~~~lasg----------------------~~Dg~I~ 317 (475)
+.|+.++.++.|.+||+.. ++.......+...+.... +++++++++.. ..+..|+
T Consensus 93 ~~l~~~~~~~~l~~~d~~~-g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 171 (388)
T 3pe7_A 93 DALFYVKDGRNLMRVDLAT-LEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLM 171 (388)
T ss_dssp SEEEEEETTTEEEEEETTT-CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEE
T ss_pred CEEEEEeCCCeEEEEECCC-CcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEE
Confidence 8999999999999999984 444444555555554444 48999988743 2446899
Q ss_pred EEECCCCceeEEEeccccceeEEEECC-CCCcEEEEecCCC---CCeEEEEECCCCceeeeecCC--CCeeEEEEcCCCC
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWSP-HQSSLLASGGGTA---DRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVN 391 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~ll~sg~Gs~---d~~I~iwd~~~~~~~~~~~~~--~~v~~l~~s~~~~ 391 (475)
+||+.+++.. .+..+...+..++|+| +|+.|+.+..+.. ...|.++|+.+++........ ..+..+.|+|+|+
T Consensus 172 ~~d~~~g~~~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~ 250 (388)
T 3pe7_A 172 RVDLKTGEST-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGS 250 (388)
T ss_dssp EEETTTCCEE-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSS
T ss_pred EEECCCCceE-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCC
Confidence 9999988654 4455677889999999 9998877653211 447888998766554443333 2477889999999
Q ss_pred eEEEEEecCCC---eEEEEECCCCce--EEEecCCCcc---eEEEEECCCCCEEEEE---------eCCCCEEEEecCCC
Q 011916 392 ELVSTHGYSQN---QIMVWKYPSMAK--VSTLTGHSLR---VLYLATSPDGQTIVTG---------AGDETLRFWNVFPS 454 (475)
Q Consensus 392 ~l~~~~g~~dg---~I~iwd~~~~~~--~~~l~~h~~~---V~~l~~spdg~~l~s~---------s~Dg~I~iW~~~~~ 454 (475)
.|+.+.....+ .|++||+.+++. +..+.++... ...+.|+|||+.|+.. ..+..|++||+..+
T Consensus 251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 251 ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 88765332222 399999998864 3344431111 1123799999988754 45678999999876
Q ss_pred CC
Q 011916 455 LK 456 (475)
Q Consensus 455 ~~ 456 (475)
..
T Consensus 331 ~~ 332 (388)
T 3pe7_A 331 TQ 332 (388)
T ss_dssp EE
T ss_pred ce
Confidence 54
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-16 Score=146.74 Aligned_cols=235 Identities=14% Similarity=0.203 Sum_probs=175.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec------CCCCceEEEEe-C-CCEEEEEeC--CCcEEEEE
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG------GHQTRAGVLAW-N-SRILSSGSR--DRNILQHD 277 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~------~h~~~v~~l~~-~-~~~l~sgs~--dg~I~iwd 277 (475)
+-..+.+++++++|+++++...++.|.+||.. ++.+..+. ++...+..+++ + ...|+++.. ++.|.+||
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 34678999999999988888889999999977 66666654 23457888888 3 344444443 89999999
Q ss_pred CCCCCccEEEec-CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEec
Q 011916 278 LRVSSDYICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 278 ~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
. .+..+..+. .+...+.+++++++|+++++...++.|.+||.. ++.+..+. .+...+.+|++++++. ++++..
T Consensus 107 ~--~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~ 182 (286)
T 1q7f_A 107 Q--YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDN 182 (286)
T ss_dssp T--TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-EEEEEG
T ss_pred C--CCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCC-EEEEEC
Confidence 4 344454443 344678999999999988887788999999964 45555553 3445689999999988 666544
Q ss_pred CCCCCeEEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEEEEecCCC-eEEEEECCCCceEEEecCCC--cceEEE
Q 011916 355 GTADRCIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHGYSQN-QIMVWKYPSMAKVSTLTGHS--LRVLYL 428 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~g~~dg-~I~iwd~~~~~~~~~l~~h~--~~V~~l 428 (475)
.++.|++||. +++.+..+... ..+..++++++|+.+++ ...++ .|.+||. +++.+..+..+. ..+.++
T Consensus 183 --~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~--~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 183 --RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIA--DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV 256 (286)
T ss_dssp --GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEE--ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred --CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEE--eCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence 6899999997 55666666433 56889999999987776 55565 9999995 566666665443 347899
Q ss_pred EECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 429 ATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 429 ~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
+++|+|+++++ +.|+.|++|++...
T Consensus 257 ~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 257 ALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred EECCCCcEEEE-CCCCeEEEEEcccc
Confidence 99999987776 67999999998654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=8.2e-18 Score=181.80 Aligned_cols=246 Identities=11% Similarity=0.085 Sum_probs=174.2
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCc-----eEEEEe--CCCEEEEEeCC---------CcE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTR-----AGVLAW--NSRILSSGSRD---------RNI 273 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~-----v~~l~~--~~~~l~sgs~d---------g~I 273 (475)
....++.|+|||++|+++ ||.|++||+.+++....+.+|... ...++| ++++|+.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 345689999999988886 899999999999988888877643 223555 67888888876 567
Q ss_pred EEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE-eccccce---------------
Q 011916 274 LQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL-TEHTAAV--------------- 337 (475)
Q Consensus 274 ~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~-~~h~~~v--------------- 337 (475)
.+||+.. ++ ...+..|...+...+|||||+.||.+. |+.|++||+.+++..+.. .++...+
T Consensus 95 ~~~d~~~-~~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~ 171 (740)
T 4a5s_A 95 DIYDLNK-RQ-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (740)
T ss_dssp EEEETTT-TE-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred EEEECCC-Cc-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcC
Confidence 7999983 33 344667788899999999999999985 589999999887654321 1222222
Q ss_pred --eEEEECCCCCcEEEEec-------------------------------CC--CCCeEEEEECCC---Cc---eeeeec
Q 011916 338 --KAIAWSPHQSSLLASGG-------------------------------GT--ADRCIRFWNTSN---GH---QLNSVD 376 (475)
Q Consensus 338 --~~l~~sp~~~~ll~sg~-------------------------------Gs--~d~~I~iwd~~~---~~---~~~~~~ 376 (475)
.++.|+|||+.|+.... |. ....|++||+.+ ++ ......
T Consensus 172 ~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~ 251 (740)
T 4a5s_A 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITA 251 (740)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECC
T ss_pred CCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecC
Confidence 35899999998877531 00 112689999998 73 332221
Q ss_pred ------CCCCeeEEEEcCCCCeEEEEEecC--CCeEEEEECCCCc----e--EEEe--cCCCcceE-----EEEECCCCC
Q 011916 377 ------TGSQVCNLAWSKNVNELVSTHGYS--QNQIMVWKYPSMA----K--VSTL--TGHSLRVL-----YLATSPDGQ 435 (475)
Q Consensus 377 ------~~~~v~~l~~s~~~~~l~~~~g~~--dg~I~iwd~~~~~----~--~~~l--~~h~~~V~-----~l~~spdg~ 435 (475)
+...+..++|+|||+.++...... +..|.+||+.+++ + +..+ .+|...|. .++|+|||+
T Consensus 252 ~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~ 331 (740)
T 4a5s_A 252 PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN 331 (740)
T ss_dssp CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC
Confidence 455688999999999766643322 3379999998876 1 1122 44665554 789999999
Q ss_pred EEE-EEeC-C--CCEEEEecCCCCCCCCc
Q 011916 436 TIV-TGAG-D--ETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 436 ~l~-s~s~-D--g~I~iW~~~~~~~~~~~ 460 (475)
.|+ ..+. + ..|++|++..+...+..
T Consensus 332 ~l~~~~s~~~G~~~l~~~~~~~~~~~~lT 360 (740)
T 4a5s_A 332 SFYKIISNEEGYRHICYFQIDKKDCTFIT 360 (740)
T ss_dssp EEEEEEECTTSCEEEEEEETTCSSCEESC
T ss_pred EEEEEEEcCCCceEEEEEECCCCceEecc
Confidence 877 6654 3 35888888876655443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.3e-17 Score=172.34 Aligned_cols=278 Identities=12% Similarity=-0.017 Sum_probs=189.4
Q ss_pred CceeEEecCCCCEEEEEc----CCeEEEEEC-CCCcEEEEeeCCCCCcEE---------EEEEc--CCCCE-EEEEeC-C
Q 011916 169 FYLNLVDWSSQNVLAVGL----GTCVYLWTA-SNSKVTRLCDLGPGDSVC---------SVQWT--REGSY-ISVGTN-L 230 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~----~~~V~lw~~-~~~~~~~~~~~~~~~~V~---------~v~~s--pdg~~-la~g~~-d 230 (475)
..+..++|+++.++.+.. ++...||.. .+++...+. .+...+. ...|+ |||++ |+.+.. +
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~ 101 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESAL--PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGD 101 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESS--CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTT
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeC--CCCccccccccccCCccceeeeecCCCeEEEEEECCC
Confidence 467778999886655544 678888984 444443333 3444555 56666 99998 777654 5
Q ss_pred CeEEEEECC--CCeeeEEecC-----CCCceEEEEe--CCCEEEEEeCC----------CcEEEEECCCCC----ccEEE
Q 011916 231 GQVQVWDGT--QCKRVRTFGG-----HQTRAGVLAW--NSRILSSGSRD----------RNILQHDLRVSS----DYICK 287 (475)
Q Consensus 231 g~v~iwd~~--~~~~~~~~~~-----h~~~v~~l~~--~~~~l~sgs~d----------g~I~iwd~~~~~----~~~~~ 287 (475)
..|.+|++. .......+.. |...+..++| +++.|++++.+ ..|.+||+.... .....
T Consensus 102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 181 (662)
T 3azo_A 102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE 181 (662)
T ss_dssp CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence 667777765 2034455555 6778889999 57888888876 589999997421 33455
Q ss_pred ec-CccCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECC-CC---ceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 288 LA-GHKSEVCGLKWSHDDRELASGGND--------NQLLVWNQH-SQ---QPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 288 ~~-~h~~~V~~l~~s~~~~~lasg~~D--------g~I~iwd~~-~~---~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
+. .+...+..++|||||++|+.++.+ ..|++||+. ++ +.......|...+..++|+|||+ +++++.
T Consensus 182 l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~ 260 (662)
T 3azo_A 182 LSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATD 260 (662)
T ss_dssp SSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEEC
T ss_pred EEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEEC
Confidence 55 666778889999999999988755 379999998 56 44334444578899999999999 666654
Q ss_pred CCCCC--eEEEEECCCCceeeeecCCCC---------eeEEEEcCCCCeEEEEEecCCCeEEEE--ECCCCceEEEecCC
Q 011916 355 GTADR--CIRFWNTSNGHQLNSVDTGSQ---------VCNLAWSKNVNELVSTHGYSQNQIMVW--KYPSMAKVSTLTGH 421 (475)
Q Consensus 355 Gs~d~--~I~iwd~~~~~~~~~~~~~~~---------v~~l~~s~~~~~l~~~~g~~dg~I~iw--d~~~~~~~~~l~~h 421 (475)
.++ .|.+||+.+++.......... +..++|+++++.+++ +.. +.+.|| |..+++ +..+..|
T Consensus 261 --~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~--~~~-~~~~l~~~d~~~~~-~~~l~~~ 334 (662)
T 3azo_A 261 --RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVV--HGK-GAAVLGILDPESGE-LVDAAGP 334 (662)
T ss_dssp --TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEE--EBS-SSCEEEEEETTTTE-EEECCSS
T ss_pred --CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEE--EEc-CccEEEEEECCCCc-EEEecCC
Confidence 566 788888877776554433221 467899999998887 555 777887 655554 6778888
Q ss_pred CcceEEE-EECCCCCEEEEEeCCCCEEEE--ecCCCC
Q 011916 422 SLRVLYL-ATSPDGQTIVTGAGDETLRFW--NVFPSL 455 (475)
Q Consensus 422 ~~~V~~l-~~spdg~~l~s~s~Dg~I~iW--~~~~~~ 455 (475)
...+..+ +++.+.-++++++.+....+| ++.++.
T Consensus 335 ~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 335 WTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp CCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 8888777 554443344455666544454 554544
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-16 Score=150.97 Aligned_cols=238 Identities=10% Similarity=0.131 Sum_probs=166.3
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC---C--eEEEEECCCCeeeEEecCCCCceEEEEe--
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL---G--QVQVWDGTQCKRVRTFGGHQTRAGVLAW-- 259 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d---g--~v~iwd~~~~~~~~~~~~h~~~v~~l~~-- 259 (475)
++.|++|++.+++...+ ..+..++|+|||++||.++.+ + .|.+|++.+++.......+. +..++|
T Consensus 42 ~~~l~~~d~~~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECT
T ss_pred cceEEEEeCCCCceEEc------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECC
Confidence 56799999999886554 457889999999999988754 3 38888988887665554433 899999
Q ss_pred CCCEEEEEeC---------------------------CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC
Q 011916 260 NSRILSSGSR---------------------------DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN 312 (475)
Q Consensus 260 ~~~~l~sgs~---------------------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~ 312 (475)
+++.|+.++. ...|.+||+. .+..+..+.. . .+..+.|+||| +++++..
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~-~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~ 189 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTE-SEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPH 189 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETT-TTEEEEEEEE-E-TTCEEEEETTE-EEEEEEC
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECC-CCeEEeeecC-C-CcccccCCCCe-EEEEEec
Confidence 4677777753 2578899987 3443233433 3 78899999999 7777765
Q ss_pred CC---------cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCC-----CCCeEEEEECCCCceeeeec-C
Q 011916 313 DN---------QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT-----ADRCIRFWNTSNGHQLNSVD-T 377 (475)
Q Consensus 313 Dg---------~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs-----~d~~I~iwd~~~~~~~~~~~-~ 377 (475)
++ .|+++| +++ ...+..+ ..+..+ +|+|+.|++.+... ....|.+|| +++...... +
T Consensus 190 ~~~~~~~~~~~~l~~~d--~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~ 261 (347)
T 2gop_A 190 REIIPQYFKFWDIYIWE--DGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV 261 (347)
T ss_dssp CCSSCCSSCCEEEEEEE--TTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC
T ss_pred ccccccccccccEEEeC--CCc-eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC
Confidence 42 355555 444 3444444 445444 99999887776311 135788898 565544443 3
Q ss_pred CCCeeE-EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCE-EEEecC
Q 011916 378 GSQVCN-LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETL-RFWNVF 452 (475)
Q Consensus 378 ~~~v~~-l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I-~iW~~~ 452 (475)
...+.. +.|+ ++ .+++ +..++.++|| +.+++. ..+..+...|.+++|++ .++++++.++.. .+|.+.
T Consensus 262 ~~~~~~~~~~s-dg-~~~~--~~~~~~~~l~-~~~g~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 262 DRGVGQAKIKD-GK-VYFT--LFEEGSVNLY-IWDGEI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp CSEEEEEEEET-TE-EEEE--EEETTEEEEE-EESSSE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred CcccCCccEEc-Cc-EEEE--EecCCcEEEE-EcCCce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 456775 8999 87 5555 6678899999 876554 44445678899999999 677888777765 888876
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-17 Score=158.19 Aligned_cols=227 Identities=13% Similarity=0.051 Sum_probs=159.9
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC-CceEEEEeC--CCEE-EEEeCCCcEEEEECCCCCccEEEec
Q 011916 214 SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ-TRAGVLAWN--SRIL-SSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 214 ~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
.+++++++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+ ++.+ +++..++.|.+||+. .++....+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-CCcEEEEEE
Confidence 45678889999999999999999999999988887543 246677774 5554 555678999999997 445554444
Q ss_pred C-c-----cCCEEEEEEcCCCCEEEEEeCC------------CcEEEEECCCCce---eEEEeccccceeEEEECCCCCc
Q 011916 290 G-H-----KSEVCGLKWSHDDRELASGGND------------NQLLVWNQHSQQP---TLRLTEHTAAVKAIAWSPHQSS 348 (475)
Q Consensus 290 ~-h-----~~~V~~l~~s~~~~~lasg~~D------------g~I~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~ 348 (475)
. + ...+.+++|+|+|++|++++.+ +.|.+||+.+++. +..+. +...+.+++|+|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~- 160 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGS- 160 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSC-
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCc-
Confidence 2 2 2337889999999999998865 8999999987443 33333 344688999999999
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCCC-------------------------CeeEEEEcCCCCeE---------E
Q 011916 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTGS-------------------------QVCNLAWSKNVNEL---------V 394 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~-------------------------~v~~l~~s~~~~~l---------~ 394 (475)
+++.+ +.|.+||+.+++.+..+.... ....+++++++... +
T Consensus 161 l~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 235 (349)
T 1jmx_B 161 LYVAG-----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 235 (349)
T ss_dssp EEEES-----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred EEEcc-----CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeE
Confidence 76642 339999999999887775432 23445666544221 1
Q ss_pred EEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECC-CCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-DGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
.......+.+.+|++ ..+...+..++|+| ||++|+++ ++.|.+||+.+++....
T Consensus 236 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~ 290 (349)
T 1jmx_B 236 LSVDLKTGKTHTQEF---------ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA 290 (349)
T ss_dssp EEEETTTCCEEEEEE---------EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred EEEeccCCcEEeccc---------ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence 111223344444443 23556789999999 99999988 88999999987765443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-16 Score=155.35 Aligned_cols=256 Identities=11% Similarity=0.072 Sum_probs=186.1
Q ss_pred EEecCCC-CEEEEEc-----------CCeEEEEECCCCcEEEEeeCC-----CCCcEEEEEEcCCCCEEEEEeC--CCeE
Q 011916 173 LVDWSSQ-NVLAVGL-----------GTCVYLWTASNSKVTRLCDLG-----PGDSVCSVQWTREGSYISVGTN--LGQV 233 (475)
Q Consensus 173 ~l~ws~~-~~la~~~-----------~~~V~lw~~~~~~~~~~~~~~-----~~~~V~~v~~spdg~~la~g~~--dg~v 233 (475)
.+.++++ +.+.++. ++.|.+||..+.+....+.+. +......++++|||++|+++.. ++.|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 5889987 4444442 467999999999988777643 2345678999999999999874 5799
Q ss_pred EEEECCCCeeeEE-ecCCCCceEEEEe--C-CCEEEEEeCCCcEEEEECCCCCccEEE------ecCccCCEEEEEEcCC
Q 011916 234 QVWDGTQCKRVRT-FGGHQTRAGVLAW--N-SRILSSGSRDRNILQHDLRVSSDYICK------LAGHKSEVCGLKWSHD 303 (475)
Q Consensus 234 ~iwd~~~~~~~~~-~~~h~~~v~~l~~--~-~~~l~sgs~dg~I~iwd~~~~~~~~~~------~~~h~~~V~~l~~s~~ 303 (475)
.+||+.+++.+.. +... .. ..+.+ + +..+++.+.||.+.+|++...++.... +..+...+ .+.++++
T Consensus 134 ~v~d~~~~~~~~~~i~~~-~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~ 210 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAA-GC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALD 210 (361)
T ss_dssp EEEETTTTEEEEEEGGGT-TE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEEC
T ss_pred EEEECCCCcEEEEEecCC-Cc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEeccc
Confidence 9999999998887 5532 22 11222 3 367888999999999998754444311 11122222 2334567
Q ss_pred CCEEEEEeCCCcEEEEECCCCcee--EEEecc----------ccceeEEEECCCCCcEEEEec--CC------CCCeEEE
Q 011916 304 DRELASGGNDNQLLVWNQHSQQPT--LRLTEH----------TAAVKAIAWSPHQSSLLASGG--GT------ADRCIRF 363 (475)
Q Consensus 304 ~~~lasg~~Dg~I~iwd~~~~~~~--~~~~~h----------~~~v~~l~~sp~~~~ll~sg~--Gs------~d~~I~i 363 (475)
+..++..+.++.|+++|+...... ..+... ......++|+|+++.++++.. |. ..+.|.+
T Consensus 211 g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~v 290 (361)
T 2oiz_A 211 KDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWV 290 (361)
T ss_dssp SSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEE
T ss_pred CCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEE
Confidence 778888888999999999755422 121110 111223789999988887642 00 1358999
Q ss_pred EECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC--ceEEEecCCCcceEEEEECCCCC
Q 011916 364 WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM--AKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 364 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
||+.+++.+..+..+. +..++|+|+|++|+++ .. +.|.+||..++ +.+.++..+......++++|||.
T Consensus 291 iD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~--n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 291 MDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTL--DG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EETTTTEEEEEEECTT-CCEEEEETTTTEEEEE--CS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCcEEEEEecCC-eeEEEECCCCCEEEEe--CC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 9999999999998777 9999999999998884 34 99999999999 99999877777889999999986
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-15 Score=148.17 Aligned_cols=262 Identities=10% Similarity=0.075 Sum_probs=183.7
Q ss_pred eeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 171 LNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
++.+.|+++ .++..+.++.+..| .++....+. .+...+.+++|+++|++++++..++.|.+||..+++......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~ 83 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV 83 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE
T ss_pred cceeeecCCccceeEEeecccCccc---ccceeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEee
Confidence 456677765 34444567788888 233333333 455678999999999988888889999999998887665554
Q ss_pred CCCCceEEEEeC--CCEEEEEeCC----CcEEEEECCCCCccEEEec--CccCCEEEEEEcCCCCEEEEEeC------CC
Q 011916 249 GHQTRAGVLAWN--SRILSSGSRD----RNILQHDLRVSSDYICKLA--GHKSEVCGLKWSHDDRELASGGN------DN 314 (475)
Q Consensus 249 ~h~~~v~~l~~~--~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~------Dg 314 (475)
.+...+.+++++ ++++++...+ +.|.+||... ......+. .+...+.+++++++|+++++... .+
T Consensus 84 ~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~ 162 (333)
T 2dg1_A 84 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG-DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLG 162 (333)
T ss_dssp CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS-CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCE
T ss_pred CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC-CEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCc
Confidence 567789999995 5666666665 6899999873 33322222 34457999999999988777654 35
Q ss_pred cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-Cceeeee--------cCCCCeeEEE
Q 011916 315 QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSV--------DTGSQVCNLA 385 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~--------~~~~~v~~l~ 385 (475)
.|..+|..+++.. .+..+...+..++|+|+++.++++.. .++.|.+||+.+ +..+..+ .....+..++
T Consensus 163 ~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 239 (333)
T 2dg1_A 163 GVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTET--TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCC 239 (333)
T ss_dssp EEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEG--GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEE
T ss_pred eEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeC--CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceE
Confidence 6777776655443 33334456789999999987777654 678999999864 4332211 1123678899
Q ss_pred EcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc------ceEEEEECCCCCEEEEEeCC
Q 011916 386 WSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL------RVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~------~V~~l~~spdg~~l~s~s~D 443 (475)
++++|+.+++ ...++.|.+||. +++.+..+..+.. .+.+++|++|+..|+.++.+
T Consensus 240 ~d~~G~l~v~--~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 240 IDSDDNLYVA--MYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp EBTTCCEEEE--EETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ECCCCCEEEE--EcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence 9999987776 456789999998 5666666654433 68999999998777665554
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-16 Score=155.62 Aligned_cols=240 Identities=8% Similarity=0.018 Sum_probs=164.0
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECC-CCcEEEEeeCCCCCcEEEEEEcCCCCE--EEEEe-------------CCCeE
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTAS-NSKVTRLCDLGPGDSVCSVQWTREGSY--ISVGT-------------NLGQV 233 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~-~~~~~~~~~~~~~~~V~~v~~spdg~~--la~g~-------------~dg~v 233 (475)
+..++|+++ ++|+++..+.|.+|++. +++...+......+.+.+++|+|+|++ ++++. .+|.+
T Consensus 42 ~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v 121 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp CSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred CcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence 456889987 44444443399999997 777655443211133567899999994 44543 68999
Q ss_pred EEEECC-CCeeeEEec----CCCCceEEEEeC--CCEEEEEeC-CCcEEEEECCCCCcc--EEEec--CccCCEEEEEEc
Q 011916 234 QVWDGT-QCKRVRTFG----GHQTRAGVLAWN--SRILSSGSR-DRNILQHDLRVSSDY--ICKLA--GHKSEVCGLKWS 301 (475)
Q Consensus 234 ~iwd~~-~~~~~~~~~----~h~~~v~~l~~~--~~~l~sgs~-dg~I~iwd~~~~~~~--~~~~~--~h~~~V~~l~~s 301 (475)
.+|++. +++....+. .+...+.+++|+ +++|+++.. ++.|.+||+...++. +..+. .|...+..++|+
T Consensus 122 ~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s 201 (365)
T 1jof_A 122 NVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH 201 (365)
T ss_dssp EEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC
T ss_pred EEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC
Confidence 999997 465544443 255678899995 677777654 689999999722222 22232 245679999999
Q ss_pred CCCCEEEEEeC-CCcEEEEECC--CCcee---EEEec-------ccc------ceeEEE-ECCCCCcEEEEecCCCC---
Q 011916 302 HDDRELASGGN-DNQLLVWNQH--SQQPT---LRLTE-------HTA------AVKAIA-WSPHQSSLLASGGGTAD--- 358 (475)
Q Consensus 302 ~~~~~lasg~~-Dg~I~iwd~~--~~~~~---~~~~~-------h~~------~v~~l~-~sp~~~~ll~sg~Gs~d--- 358 (475)
|||++|++++. ++.|.+|++. +++.. ..+.. |.. .+..++ |+|+|++|+++..+ .+
T Consensus 202 pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~-~~~~~ 280 (365)
T 1jof_A 202 PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA-NKFEL 280 (365)
T ss_dssp TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE-SSTTS
T ss_pred CCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC-CCCCC
Confidence 99999988775 6899999875 45442 12221 122 588999 99999988776531 12
Q ss_pred -CeEEEEECC-CCceee---eec-CCCCeeEEEEcC---CCCeEEEEEecCCCeEEEEECCCC
Q 011916 359 -RCIRFWNTS-NGHQLN---SVD-TGSQVCNLAWSK---NVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 359 -~~I~iwd~~-~~~~~~---~~~-~~~~v~~l~~s~---~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
+.|.+|++. +++... .+. ....+..++|+| +|++|+++ +..++.|.+|++...
T Consensus 281 ~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~-~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 281 QGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT-DDQEGWLEIYRWKDE 342 (365)
T ss_dssp CCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE-CSSSCEEEEEEEETT
T ss_pred CCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEE-EcCCCeEEEEEEchh
Confidence 289999986 666543 232 345577899999 89999884 334689999998655
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-16 Score=155.32 Aligned_cols=260 Identities=13% Similarity=0.097 Sum_probs=185.3
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEECCCCeeeEEecCC------
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN----------LGQVQVWDGTQCKRVRTFGGH------ 250 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~----------dg~v~iwd~~~~~~~~~~~~h------ 250 (475)
++.|++||..++++...+..+ ..+ .++|+|||++|+++.. ++.|.+||..+.+.+.++...
T Consensus 30 d~~v~v~D~~t~~~~~~i~~g-~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~ 106 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLGMVPTA-FNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG 106 (361)
T ss_dssp GCEEEEEETTTCCEEEEEECC-EEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred cCeEEEEECCCCeEEEEecCC-CCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence 679999999999988777643 223 8999999999999873 577999999999888877632
Q ss_pred CCceEEEEe--CCCEEEEEeC--CCcEEEEECCCCCccEEE-ecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC-
Q 011916 251 QTRAGVLAW--NSRILSSGSR--DRNILQHDLRVSSDYICK-LAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHS- 323 (475)
Q Consensus 251 ~~~v~~l~~--~~~~l~sgs~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~- 323 (475)
......+++ ++++|+++.. ++.|.+||+. ..+.+.. +. +.. ...+.+.|++ ..+++.+.||.+.+|++..
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~-~~~~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA-KGDYVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETT-TTEEEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECC-CCcEEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 234455666 6788888764 6899999998 4455554 33 222 2335667765 6788889999999999875
Q ss_pred CceeEEE------eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee--eeecC-----------CCCeeEE
Q 011916 324 QQPTLRL------TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL--NSVDT-----------GSQVCNL 384 (475)
Q Consensus 324 ~~~~~~~------~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~--~~~~~-----------~~~v~~l 384 (475)
++..... ..+..+ ..+.+++++..++... .++.|.++|+...... ..+.. ......+
T Consensus 184 g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~---~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~ 259 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVS---YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLV 259 (361)
T ss_dssp SSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEB---TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCE
T ss_pred CcEeeeccccceEcCCCCc-eEEEecccCCEEEEEe---CCCeEEEEEecCCCceecccccccCccccccccccCCeeEE
Confidence 4443221 111111 2333456676666543 6889999998755421 22111 0112237
Q ss_pred EEcCCCCeEEEEEe-c--------CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC-
Q 011916 385 AWSKNVNELVSTHG-Y--------SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS- 454 (475)
Q Consensus 385 ~~s~~~~~l~~~~g-~--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~- 454 (475)
+|+|+++.++++.. . ..+.|.+||+.+++.+.++..+. +.+++|+|||++|++++. ++|.+||..++
T Consensus 260 a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~ 336 (361)
T 2oiz_A 260 GLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE 336 (361)
T ss_dssp EEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred EEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence 89999999888532 0 13589999999999999998877 999999999999998886 99999999988
Q ss_pred -CCCCC
Q 011916 455 -LKAPA 459 (475)
Q Consensus 455 -~~~~~ 459 (475)
+....
T Consensus 337 l~~~~~ 342 (361)
T 2oiz_A 337 PKLLRT 342 (361)
T ss_dssp CEEEEE
T ss_pred ceeeEE
Confidence 65544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-17 Score=160.29 Aligned_cols=261 Identities=11% Similarity=0.039 Sum_probs=173.4
Q ss_pred EEEECCCCcEEEEeeCCCCC-----cEEEEEEcCCCCEEEEEeCC---CeEEEEECCCCeeeEEecCCCCceEEEEe--C
Q 011916 191 YLWTASNSKVTRLCDLGPGD-----SVCSVQWTREGSYISVGTNL---GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--N 260 (475)
Q Consensus 191 ~lw~~~~~~~~~~~~~~~~~-----~V~~v~~spdg~~la~g~~d---g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~ 260 (475)
...|..++.....+. .+.. .+.+++|+|||++|+..... ..|.+||+.+++......++......+.| +
T Consensus 13 ~~~d~~~g~~~~~l~-~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spd 91 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLT-PTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTD 91 (396)
T ss_dssp EEECTTTCCEEEECS-CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTT
T ss_pred eeecCCCCcceEEEe-cCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCC
Confidence 344677776555543 2222 26778999999998887653 46888999888765544433332333556 5
Q ss_pred CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEE-------------------EEEcCCCCEEEEE-----eCCCcE
Q 011916 261 SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCG-------------------LKWSHDDRELASG-----GNDNQL 316 (475)
Q Consensus 261 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~-------------------l~~s~~~~~lasg-----~~Dg~I 316 (475)
++.|+.++.++.|.+||+.. +........+...... +.|+|+++.++.+ ..+..|
T Consensus 92 g~~l~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l 170 (396)
T 3c5m_A 92 ERAFFYVKNELNLMKVDLET-LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRL 170 (396)
T ss_dssp SSEEEEEETTTEEEEEETTT-CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEE
T ss_pred CCEEEEEEcCCcEEEEECCC-CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceE
Confidence 78999999999999999973 4433333333332222 3567777766654 356789
Q ss_pred EEEECCCCceeEEEeccccceeEEEECC-CCCcEEEEecCCCC---CeEEEEECCCCceeeeecC--CCCeeEEEEcCCC
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWSP-HQSSLLASGGGTAD---RCIRFWNTSNGHQLNSVDT--GSQVCNLAWSKNV 390 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~sp-~~~~ll~sg~Gs~d---~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~~~ 390 (475)
++||+.+++..... .+...+..+.|+| ++..|+.+..+..+ ..|.+||+.+++....... ...+..+.|+|+|
T Consensus 171 ~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg 249 (396)
T 3c5m_A 171 IKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDG 249 (396)
T ss_dssp EEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTS
T ss_pred EEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCC
Confidence 99999988765443 5677889999999 78766665431111 5799999877654433332 2247789999999
Q ss_pred CeEEEEEec-CC--CeEEEEECCCCceEEEecCCCcceEEEEECC-CCCEEEEEe----------------CCCCEEEEe
Q 011916 391 NELVSTHGY-SQ--NQIMVWKYPSMAKVSTLTGHSLRVLYLATSP-DGQTIVTGA----------------GDETLRFWN 450 (475)
Q Consensus 391 ~~l~~~~g~-~d--g~I~iwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~s~s----------------~Dg~I~iW~ 450 (475)
+.|+.+... .. +.|++||+.+++........ . .. +.|+| ||++|++++ .+..|++||
T Consensus 250 ~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d 326 (396)
T 3c5m_A 250 SAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-P-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLN 326 (396)
T ss_dssp SCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-S-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEE
T ss_pred CEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-C-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEe
Confidence 988775221 12 44999999887654332211 1 23 89999 999888765 347899999
Q ss_pred cCCCCCC
Q 011916 451 VFPSLKA 457 (475)
Q Consensus 451 ~~~~~~~ 457 (475)
+..+...
T Consensus 327 ~~~~~~~ 333 (396)
T 3c5m_A 327 TKAKSAQ 333 (396)
T ss_dssp TTTTBCC
T ss_pred cccCceE
Confidence 9876643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-15 Score=162.49 Aligned_cols=242 Identities=9% Similarity=0.048 Sum_probs=175.1
Q ss_pred CcEEEEEEcCCCCEEEEEeCCC-----eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCc----------
Q 011916 210 DSVCSVQWTREGSYISVGTNLG-----QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRN---------- 272 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg-----~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~---------- 272 (475)
..+..++|||||++||.+..++ .|++||+.+++.+.....+ ..+..++| +++.|+.++.++.
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~ 203 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS 203 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccc
Confidence 4688999999999999877644 8999999999877643222 23667888 5688888887766
Q ss_pred ------EEEEECCCCCcc-EEEec--CccCCEEEEEEcCCCCEEEEEeC-----CCcEEEEECCC------Cc-eeEEEe
Q 011916 273 ------ILQHDLRVSSDY-ICKLA--GHKSEVCGLKWSHDDRELASGGN-----DNQLLVWNQHS------QQ-PTLRLT 331 (475)
Q Consensus 273 ------I~iwd~~~~~~~-~~~~~--~h~~~V~~l~~s~~~~~lasg~~-----Dg~I~iwd~~~------~~-~~~~~~ 331 (475)
|.+|++...... ...+. .|...+..+.|+|||++|+.++. +..|++||+.+ +. ....+.
T Consensus 204 ~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~ 283 (710)
T 2xdw_A 204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI 283 (710)
T ss_dssp CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE
T ss_pred cCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee
Confidence 999999754322 22222 35566889999999999988764 57899999986 43 356666
Q ss_pred ccccceeEEEECCCCCcEEEEecC-CCCCeEEEEECCCCce---eeeecCCC--CeeEEEEcCCCCeEEEEEecCCC--e
Q 011916 332 EHTAAVKAIAWSPHQSSLLASGGG-TADRCIRFWNTSNGHQ---LNSVDTGS--QVCNLAWSKNVNELVSTHGYSQN--Q 403 (475)
Q Consensus 332 ~h~~~v~~l~~sp~~~~ll~sg~G-s~d~~I~iwd~~~~~~---~~~~~~~~--~v~~l~~s~~~~~l~~~~g~~dg--~ 403 (475)
.+...+.. .|+|+|..|++.+.. .....|.+||+.++.. ...+.+.. .+..+.|++++..+++ ...++ .
T Consensus 284 ~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~--~~~~g~~~ 360 (710)
T 2xdw_A 284 DNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC--YLHDVKNT 360 (710)
T ss_dssp CSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE--EEETTEEE
T ss_pred CCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE--EEECCEEE
Confidence 66666554 588999988777541 1245799999988742 22233333 5778899866665555 44566 5
Q ss_pred EEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEE-e---CCCCEEEEecCCCC
Q 011916 404 IMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG-A---GDETLRFWNVFPSL 455 (475)
Q Consensus 404 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~-s---~Dg~I~iW~~~~~~ 455 (475)
|++|++.+++.+..+..+.+.|..+.++|++..|+.. + ..++|++||+.++.
T Consensus 361 l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 361 LQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7778887788888888888889999999998766633 2 34789999998766
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-16 Score=166.98 Aligned_cols=242 Identities=8% Similarity=-0.025 Sum_probs=171.3
Q ss_pred CCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEECCCCeeeEEecCCCCceE---------EEEe----CCCE-EEEEeC-
Q 011916 207 GPGDSVCSVQWTREGSYISVG--TNLGQVQVWDGTQCKRVRTFGGHQTRAG---------VLAW----NSRI-LSSGSR- 269 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g--~~dg~v~iwd~~~~~~~~~~~~h~~~v~---------~l~~----~~~~-l~sgs~- 269 (475)
+|...+..++|++++-+++.. ..++...||....+...+.+..|...+. .+.| +++. |+.++.
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~ 100 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFG 100 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTT
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECC
Confidence 467789999999876666666 4578899999655555667776665554 4444 4666 665543
Q ss_pred CCcEEEEECCCCC-ccEEEecC-----ccCCEEEEEEcCCCCEEEEEeCC----------CcEEEEECCC------Ccee
Q 011916 270 DRNILQHDLRVSS-DYICKLAG-----HKSEVCGLKWSHDDRELASGGND----------NQLLVWNQHS------QQPT 327 (475)
Q Consensus 270 dg~I~iwd~~~~~-~~~~~~~~-----h~~~V~~l~~s~~~~~lasg~~D----------g~I~iwd~~~------~~~~ 327 (475)
+..|.++++...+ .....+.. |...+..++|+|||+.|++++.| ..|++||+.+ ++ .
T Consensus 101 ~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~ 179 (662)
T 3azo_A 101 DQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-V 179 (662)
T ss_dssp TCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-S
T ss_pred CCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-e
Confidence 5566666654102 33445555 66788999999999999998877 5899999988 54 4
Q ss_pred EEEe-ccccceeEEEECCCCCcEEEEecCC-----CCCeEEEEECC-CC---ceeeeec-CCCCeeEEEEcCCCCeEEEE
Q 011916 328 LRLT-EHTAAVKAIAWSPHQSSLLASGGGT-----ADRCIRFWNTS-NG---HQLNSVD-TGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 328 ~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs-----~d~~I~iwd~~-~~---~~~~~~~-~~~~v~~l~~s~~~~~l~~~ 396 (475)
..+. .+...+..++|+|||+.|+.+.... ....|++||+. ++ +...... +...+..+.|+|+|+.+++
T Consensus 180 ~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~- 258 (662)
T 3azo_A 180 RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVA- 258 (662)
T ss_dssp EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEE-
T ss_pred eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEE-
Confidence 4555 6667888999999999887765310 12589999998 57 3333333 3578999999999995554
Q ss_pred EecCCC--eEEEEECCCCceEEEecCCCcc--------eEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 397 HGYSQN--QIMVWKYPSMAKVSTLTGHSLR--------VLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 397 ~g~~dg--~I~iwd~~~~~~~~~l~~h~~~--------V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+..++ .|++||..+++.......+... +..++|+++++++++++. +.++||.++
T Consensus 259 -~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 259 -TDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp -ECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred -ECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 55667 6777777666654333333222 567899999999999998 999999554
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.5e-13 Score=127.09 Aligned_cols=273 Identities=9% Similarity=-0.038 Sum_probs=190.1
Q ss_pred CceeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee-E
Q 011916 169 FYLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV-R 245 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~-~ 245 (475)
..+.++.++++ +++++.. ++.|.+|+.. ++............+.++++.++|.++++...++.|..||.. ++.. .
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~ 92 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEY 92 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEE
Confidence 34677888876 6666665 6899999998 665544322345789999999999977777768899999976 3322 2
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.+......+..++++ +.++++...++.|.+||.. ..........+...+.++++.++|+++++...++.|.+||. +
T Consensus 93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~ 170 (299)
T 2z2n_A 93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-GKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S 170 (299)
T ss_dssp ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred eCCCcCCCceeeEECCCCCEEEEecCCceEEEECCC-CCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence 222345578888885 5666666678899999983 33222223334567899999999988887777789999999 6
Q ss_pred CceeEE-EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee-ec-CCCCeeEEEEcCCCCeEEEEEecC
Q 011916 324 QQPTLR-LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS-VD-TGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 324 ~~~~~~-~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~-~~-~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
++.... +..+...+.++++.+++. ++++.. .++.|.+||. +++.... .. ....+..++++++|+.+++ ...
T Consensus 171 g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~ 244 (299)
T 2z2n_A 171 GDITEFKIPTPASGPVGITKGNDDA-LWFVEI--IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFT--EWG 244 (299)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE--ETT
T ss_pred CcEEEeeCCCCCCcceeEEECCCCC-EEEEcc--CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEe--ccC
Confidence 654332 233445688999999988 555443 5789999999 6664432 11 3367899999999986665 556
Q ss_pred CCeEEEEECCCCceEE-EecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 401 QNQIMVWKYPSMAKVS-TLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 401 dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
++.|.+||. +++... .+..+...+.++++ ++|.++++.. .+.|..++....
T Consensus 245 ~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 245 ANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp TTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred CceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 789999998 443222 23345567999999 8998777665 556767776543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-14 Score=137.35 Aligned_cols=234 Identities=14% Similarity=0.142 Sum_probs=175.4
Q ss_pred eeEEecCCC-CEEEEEcCC-------------------------eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEE
Q 011916 171 LNLVDWSSQ-NVLAVGLGT-------------------------CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI 224 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~-------------------------~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~l 224 (475)
+..++++++ +++++..++ .|++||..++++.......+-.....++++++|+++
T Consensus 26 v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~ 105 (329)
T 3fvz_A 26 VSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYW 105 (329)
T ss_dssp EEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEE
T ss_pred ceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEE
Confidence 677888886 666666544 699999999998776643445678999999999988
Q ss_pred EEEeCCCeEEEEECCCCe-eeEEe---------cCCCCceEEEEeC---CCEEEEEe-CCCcEEEEECCCCCccEEEecC
Q 011916 225 SVGTNLGQVQVWDGTQCK-RVRTF---------GGHQTRAGVLAWN---SRILSSGS-RDRNILQHDLRVSSDYICKLAG 290 (475)
Q Consensus 225 a~g~~dg~v~iwd~~~~~-~~~~~---------~~h~~~v~~l~~~---~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~ 290 (475)
++...++.|++||..... .+..+ .++-.....++++ +.++++.+ .++.|.+||. .+..+..+..
T Consensus 106 v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~--~g~~~~~~~~ 183 (329)
T 3fvz_A 106 VTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP--SGKFVTQWGE 183 (329)
T ss_dssp EEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT--TSCEEEEECE
T ss_pred EEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC--CCCEEEEecc
Confidence 888889999999976542 45555 2344568889985 45666665 6899999995 3555555532
Q ss_pred ----------ccCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEec---
Q 011916 291 ----------HKSEVCGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGG--- 354 (475)
Q Consensus 291 ----------h~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~--- 354 (475)
+-....+|+++++ +.++++...++.|++||..+++.+..+. .+...+.+++|+| +. ++.+.+
T Consensus 184 ~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~-~~~~~g~~~ 261 (329)
T 3fvz_A 184 ESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GF-LFAVNGKPY 261 (329)
T ss_dssp ECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TE-EEEEECCCC
T ss_pred CCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CE-EEEeCCCEE
Confidence 2344899999998 7777777788899999999888887774 3566788999999 32 333332
Q ss_pred --CCCCCeEEEEECCCCceeeeec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 355 --GTADRCIRFWNTSNGHQLNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 355 --Gs~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
...+..|++||..+++.+..+. ....+..++++++|..+++ ...++.|++|++.
T Consensus 262 v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyva--d~~~~~I~~~~~~ 321 (329)
T 3fvz_A 262 FGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIG--DAHTNTVWKFTLT 321 (329)
T ss_dssp TTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEE--ESSSCCEEEEEEE
T ss_pred eccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEE--ECCCCEEEEEeCC
Confidence 1235689999999999998874 3456899999999955555 6678899999974
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-14 Score=136.20 Aligned_cols=229 Identities=10% Similarity=0.042 Sum_probs=168.4
Q ss_pred CCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 208 PGDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 208 ~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
......+++|+|+|+ +++++..++.|..|+..++ ...+..+...+.+++++ +.++++...++.|.+||... +..
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~-g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG-GEW 102 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT-CCE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC-CcE
Confidence 345678999999998 7888888999999999877 66677777889999994 57776666678999999863 333
Q ss_pred EEEecCc----cCCEEEEEEcCCCCEEEEE----e-------------CCCcEEEEECCCCceeEEEeccccceeEEEEC
Q 011916 285 ICKLAGH----KSEVCGLKWSHDDRELASG----G-------------NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 285 ~~~~~~h----~~~V~~l~~s~~~~~lasg----~-------------~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~s 343 (475)
....... ...+..++++++|+++++. + ..+.|..++.. ++ +..+..+......++|+
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s 180 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFL 180 (296)
T ss_dssp EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEEC
T ss_pred EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEEC
Confidence 2222211 2346679999999988873 3 13456666665 43 34455566778999999
Q ss_pred CCCCcEEEEecCCCCCeEEEEECC-CCce---eeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTS-NGHQ---LNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~-~~~~---~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
|+++.+ ++.. .++.|.+|++. ++.. ...+ .....+..++++++|+.+++ . ++.|.+|+.. ++.+..+
T Consensus 181 ~dg~~l-v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~--~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 181 PSGNLL-VSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWAS--A--GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp TTSCEE-EEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEE--E--TTEEEEECTT-SCEEEEE
T ss_pred CCCCEE-EEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEE--c--CCeEEEECCC-CCEEEEE
Confidence 999977 6654 78999999987 5554 2222 13345678999999986665 3 7899999976 7788888
Q ss_pred cCCCcceEEEEE-CCCCCEEEEEeCCCCEEEEecCC
Q 011916 419 TGHSLRVLYLAT-SPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 419 ~~h~~~V~~l~~-spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
..+.. +.+++| +++++.|++++.++ +|.+..
T Consensus 253 ~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~ 284 (296)
T 3e5z_A 253 LTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIET 284 (296)
T ss_dssp ECSSC-CCEEEEESTTSCEEEEEETTE---EEEEEC
T ss_pred ECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEEc
Confidence 87777 999999 68999999888774 444443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-14 Score=141.52 Aligned_cols=262 Identities=10% Similarity=0.028 Sum_probs=185.3
Q ss_pred CCeEEEEECCCCcEEEEeeC-----CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe-C
Q 011916 187 GTCVYLWTASNSKVTRLCDL-----GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW-N 260 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~-----~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~-~ 260 (475)
++.|.+||.+++++...+.. ........+.+. +++.+++...++.|.+||..+++.+.++.. ......+++ .
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~ 93 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS 93 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE
T ss_pred CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC
Confidence 57999999999987664421 123456778774 445555555679999999999999888853 456777777 3
Q ss_pred CCEEEEEe-CCCcEEEEECCCCCccEEEecCcc-----CCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEec
Q 011916 261 SRILSSGS-RDRNILQHDLRVSSDYICKLAGHK-----SEVCGLKWSHDDRELASGG--NDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 261 ~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~s~~~~~lasg~--~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
+..++++. .++.|.+||.. ..+....+.... .....+++ ++..|+++. .++.|.++|+.+++.+..+..
T Consensus 94 ~g~lyv~~~~~~~v~~iD~~-t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~ 170 (328)
T 3dsm_A 94 DEKAYVTQIWDYRIFIINPK-TYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTI 170 (328)
T ss_dssp TTEEEEEEBSCSEEEEEETT-TTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC
T ss_pred CCeEEEEECCCCeEEEEECC-CCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc
Confidence 33555555 89999999998 445444444322 14556777 344555554 488999999999988777754
Q ss_pred cccceeEEEECCCCCcEEEEecCCC--------CCeEEEEECCCCceeeeecC--CCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTA--------DRCIRFWNTSNGHQLNSVDT--GSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~--------d~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
......++++|+|+ +++++.+.. .+.|.++|..+++....+.. +.....++|+|+++.|+++ ..
T Consensus 171 -g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~--~~-- 244 (328)
T 3dsm_A 171 -GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI--NN-- 244 (328)
T ss_dssp -SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE--SS--
T ss_pred -CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE--cc--
Confidence 33457899999998 444443211 27899999999988877754 4578999999999999884 22
Q ss_pred eEEEEECCCCceEE--EecCCCcceEEEEECC-CCCEEEEE----eCCCCEEEEecCCCCCCCCc
Q 011916 403 QIMVWKYPSMAKVS--TLTGHSLRVLYLATSP-DGQTIVTG----AGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 403 ~I~iwd~~~~~~~~--~l~~h~~~V~~l~~sp-dg~~l~s~----s~Dg~I~iW~~~~~~~~~~~ 460 (475)
.|.+||..+++... .+..+.....+++++| ++.++++. ..++.|.+|+.. ++....+
T Consensus 245 ~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i 308 (328)
T 3dsm_A 245 DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEF 308 (328)
T ss_dssp SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEE
T ss_pred EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEE
Confidence 89999998877532 1222245689999999 56666665 578999999998 6555443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-13 Score=144.23 Aligned_cols=264 Identities=13% Similarity=0.106 Sum_probs=194.8
Q ss_pred EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC--CCeeeEEecCCCCceEEEEeC--
Q 011916 185 GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT--QCKRVRTFGGHQTRAGVLAWN-- 260 (475)
Q Consensus 185 ~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~--~~~~~~~~~~h~~~v~~l~~~-- 260 (475)
..++.|.++|..+++++..+.. ...+..+.|+|||+++++++.+|.|.+||+. +.+.+..+.... ....++++
T Consensus 174 ~~~~~V~viD~~t~~v~~~i~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~ 250 (567)
T 1qks_A 174 RDAGQIALIDGSTYEIKTVLDT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKM 250 (567)
T ss_dssp TTTTEEEEEETTTCCEEEEEEC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCS
T ss_pred CCCCeEEEEECCCCeEEEEEeC--CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccc
Confidence 3478999999999999888764 3467799999999999999999999999996 788887776433 34566665
Q ss_pred ----CCEEEEEe-CCCcEEEEECCCCCccEEEecC----------ccC-CEEEEEEcCCCCE-EEEEeCCCcEEEEECCC
Q 011916 261 ----SRILSSGS-RDRNILQHDLRVSSDYICKLAG----------HKS-EVCGLKWSHDDRE-LASGGNDNQLLVWNQHS 323 (475)
Q Consensus 261 ----~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~----------h~~-~V~~l~~s~~~~~-lasg~~Dg~I~iwd~~~ 323 (475)
++++++++ .+++|.++|.. ..+.+..+.. |.. .+..+..++++.. ++....+|.|.++|...
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~ 329 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTD 329 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTC
T ss_pred cCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCC
Confidence 56666665 56999999987 4555544432 212 6788999987664 44455679999999987
Q ss_pred CceeEEE-eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CCCe---eEEE-EcCCCCeEEEEE
Q 011916 324 QQPTLRL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GSQV---CNLA-WSKNVNELVSTH 397 (475)
Q Consensus 324 ~~~~~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~~~v---~~l~-~s~~~~~l~~~~ 397 (475)
.+.+... .........+.|+|++++++++.. .++.|.++|+.+++.+..+.. +... .... ++|++..+.++.
T Consensus 330 ~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~--~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~ 407 (567)
T 1qks_A 330 LNNLKTTEISAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATS 407 (567)
T ss_dssp SSEEEEEEEECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEE
T ss_pred CccceeeeeeccccccCceECCCCCEEEEEeC--CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeC
Confidence 5432211 123345678899999999988875 689999999999998877765 3211 2333 578866666543
Q ss_pred ecCCCeEEEEECCC-------CceEEEecCCCcceEEEEECCCCCEEEEEeC-------CCCEEEEecCCC
Q 011916 398 GYSQNQIMVWKYPS-------MAKVSTLTGHSLRVLYLATSPDGQTIVTGAG-------DETLRFWNVFPS 454 (475)
Q Consensus 398 g~~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~-------Dg~I~iW~~~~~ 454 (475)
...++.|.++|..+ .+.+.++......-..+..+|++++|.+... .++|.++|+.+.
T Consensus 408 ~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 408 HMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp BSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred CCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcc
Confidence 34578999999987 6788888765444456789999999998763 359999999876
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-14 Score=135.47 Aligned_cols=238 Identities=11% Similarity=0.011 Sum_probs=168.1
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 211 SVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 211 ~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
...+++++++|++++ +...++.|.+|+..+.........+...+.+++++ ++++++.. ++.|.+||... .. ...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~-~~-~~~ 101 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGS-NN-QTV 101 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTC-SC-CEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCC-ce-Eee
Confidence 788999999999666 44678899999976654332222334567788885 46555544 88999999863 22 222
Q ss_pred ec-CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 288 LA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 288 ~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
+. .....+.+++++++|+++++...++.|.+|+..+.............+.++++++++. ++++.. .++.|.+||.
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~--~~~~i~~~~~ 178 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNRVVKLEA 178 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEG--GGTEEEEECT
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEEC--CCCEEEEEec
Confidence 32 2336789999999999888777788999998765544332222334678999999998 666543 5789999998
Q ss_pred CCCceeeeecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCC
Q 011916 367 SNGHQLNSVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDET 445 (475)
Q Consensus 367 ~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~ 445 (475)
.+......... ...+..++++++|..+++ ...++.|.+|+............+...+.+++++++|+++++...++.
T Consensus 179 ~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~ 256 (270)
T 1rwi_B 179 ESNNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR 256 (270)
T ss_dssp TTCCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTE
T ss_pred CCCceEeecccCCCCceEEEECCCCCEEEE--ECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCE
Confidence 87765443322 267899999999966665 556889999998765443322234467899999999998888889999
Q ss_pred EEEEecCCCCC
Q 011916 446 LRFWNVFPSLK 456 (475)
Q Consensus 446 I~iW~~~~~~~ 456 (475)
|+++++...+.
T Consensus 257 v~~~~~~~~~~ 267 (270)
T 1rwi_B 257 VVKLTSLEHHH 267 (270)
T ss_dssp EEEECCCGGGS
T ss_pred EEEEcCCCccc
Confidence 99999876554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-13 Score=131.03 Aligned_cols=230 Identities=12% Similarity=0.186 Sum_probs=164.8
Q ss_pred eeEEecCCC-CEEEEE-cCCeEEEEECCCCcEEEEeeC-----CCCCcEEEEEE-cCCCCEEEEEeC-CCeEEEEECCCC
Q 011916 171 LNLVDWSSQ-NVLAVG-LGTCVYLWTASNSKVTRLCDL-----GPGDSVCSVQW-TREGSYISVGTN-LGQVQVWDGTQC 241 (475)
Q Consensus 171 v~~l~ws~~-~~la~~-~~~~V~lw~~~~~~~~~~~~~-----~~~~~V~~v~~-spdg~~la~g~~-dg~v~iwd~~~~ 241 (475)
...++++++ +++++. .++.|.+|+.. ++....+.. ++...+.++++ .++++++++... ++.|.+|| .++
T Consensus 32 p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g 109 (286)
T 1q7f_A 32 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYG 109 (286)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTS
T ss_pred CceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCC
Confidence 566778775 555554 47899999987 444444421 22357899999 467766666543 78999999 667
Q ss_pred eeeEEec-CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEec--CccCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 242 KRVRTFG-GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLA--GHKSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 242 ~~~~~~~-~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
+.+..+. .+...+..++++ ++++++...++.|.+||.. +..+..+. .+...+.+++++++|+++++...++.|
T Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i 187 (286)
T 1q7f_A 110 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCV 187 (286)
T ss_dssp CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEE
T ss_pred cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC--CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEE
Confidence 7776664 344578888884 5777777788999999965 34444443 455678999999999988887888999
Q ss_pred EEEECCCCceeEEEecc--ccceeEEEECCCCCcEEEEecCCCCC-eEEEEECCCCceeeeecCC---CCeeEEEEcCCC
Q 011916 317 LVWNQHSQQPTLRLTEH--TAAVKAIAWSPHQSSLLASGGGTADR-CIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNV 390 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h--~~~v~~l~~sp~~~~ll~sg~Gs~d~-~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~ 390 (475)
++||.. ++.+..+..+ ...+..|+++++|. ++++.. .++ .|.+||. +++.+..+... ..+..++++++|
T Consensus 188 ~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~--~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g 262 (286)
T 1q7f_A 188 KVFNYE-GQYLRQIGGEGITNYPIGVGINSNGE-ILIADN--HNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDG 262 (286)
T ss_dssp EEEETT-CCEEEEESCTTTSCSEEEEEECTTCC-EEEEEC--SSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTT
T ss_pred EEEcCC-CCEEEEEccCCccCCCcEEEECCCCC-EEEEeC--CCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCC
Confidence 999974 4555566443 35789999999997 555543 455 9999995 56666666432 347799999999
Q ss_pred CeEEEEEecCCCeEEEEECCCC
Q 011916 391 NELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
+.+++ . .++.|++|++...
T Consensus 263 ~l~vs--~-~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 263 SVVLA--S-KDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEE--E-TTTEEEEEECSCC
T ss_pred cEEEE--C-CCCeEEEEEcccc
Confidence 75554 3 5899999998654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-13 Score=143.05 Aligned_cols=286 Identities=13% Similarity=0.107 Sum_probs=204.2
Q ss_pred ceeEEecCCC--CEEEEEcCCeEEEEECC--CCcEEEEeeCCCCCcEEEEEEc----CCCCEEEEEeC-CCeEEEEECCC
Q 011916 170 YLNLVDWSSQ--NVLAVGLGTCVYLWTAS--NSKVTRLCDLGPGDSVCSVQWT----REGSYISVGTN-LGQVQVWDGTQ 240 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~~~~V~lw~~~--~~~~~~~~~~~~~~~V~~v~~s----pdg~~la~g~~-dg~v~iwd~~~ 240 (475)
.+..+.++++ .+++++.++.|.+||+. +.+.+..+.. ......++|+ |||++++++.. +++|.|+|..+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t 275 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGET 275 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence 3456888886 35666678999999996 7777776653 4457899999 69999988776 58999999999
Q ss_pred CeeeEEecCC-----------CCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 241 CKRVRTFGGH-----------QTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 241 ~~~~~~~~~h-----------~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.+.+..+... ..++..+... +.+++....+|.|.++|...................++.|+|+|++
T Consensus 276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~ 355 (567)
T 1qks_A 276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRY 355 (567)
T ss_dssp CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCE
T ss_pred CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCE
Confidence 9988876521 1256666663 3566667778999999987433222222234456778999999998
Q ss_pred EEEEe-CCCcEEEEECCCCceeEEEec-----cccceeEEE-ECCCCCcEEEEecCCCCCeEEEEECCC-------Ccee
Q 011916 307 LASGG-NDNQLLVWNQHSQQPTLRLTE-----HTAAVKAIA-WSPHQSSLLASGGGTADRCIRFWNTSN-------GHQL 372 (475)
Q Consensus 307 lasg~-~Dg~I~iwd~~~~~~~~~~~~-----h~~~v~~l~-~sp~~~~ll~sg~Gs~d~~I~iwd~~~-------~~~~ 372 (475)
|+++. .++.|.++|+.+++.+..+.- |.+ ..+. ++|++..+++++. -.++.|.++|+.+ .+.+
T Consensus 356 ~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg--~g~~~~~p~~g~v~~t~~-~g~~~Vsvid~~~~~~~~~~~kvv 432 (567)
T 1qks_A 356 FITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPG--RGANFVHPTFGPVWATSH-MGDDSVALIGTDPEGHPDNAWKIL 432 (567)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCT--TCEEEEETTTEEEEEEEB-SSSSEEEEEECCTTTCTTTBTSEE
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCc--cceeeECCCCCcEEEeCC-CCCCeEEEecCCCCCCccccCEEE
Confidence 87765 578999999999987766543 322 1223 5887666766652 1468999999988 6777
Q ss_pred eeecCCC-CeeEEEEcCCCCeEEEEEecC-----CCeEEEEECCCC-----ce-EEEec--------CCCcceEEEEECC
Q 011916 373 NSVDTGS-QVCNLAWSKNVNELVSTHGYS-----QNQIMVWKYPSM-----AK-VSTLT--------GHSLRVLYLATSP 432 (475)
Q Consensus 373 ~~~~~~~-~v~~l~~s~~~~~l~~~~g~~-----dg~I~iwd~~~~-----~~-~~~l~--------~h~~~V~~l~~sp 432 (475)
..+...+ .-..+..+|+++++.+..... .+.|.++|+.+. .. ...+. ....++..+.|++
T Consensus 433 ~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 433 DSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNK 512 (567)
T ss_dssp EEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECT
T ss_pred EEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECC
Confidence 8876543 335678999999999843111 358999999877 22 12332 1245789999999
Q ss_pred CCCEEEEEe-----CCCCEEEEecCCCCCCCCc
Q 011916 433 DGQTIVTGA-----GDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 433 dg~~l~s~s-----~Dg~I~iW~~~~~~~~~~~ 460 (475)
+|+.+..+. .++.|.|+|..+.+....+
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i 545 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTLELKHVI 545 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCceEEEEe
Confidence 999877763 2789999999887765443
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.6e-14 Score=131.47 Aligned_cols=211 Identities=15% Similarity=0.075 Sum_probs=168.2
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEecCCC-CceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCc-cCCE
Q 011916 220 EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ-TRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGH-KSEV 295 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h-~~~V 295 (475)
.+++|++++.++.|.+||.++++.+.++..+. ..+.++.+ ++++|+ +.++.|..||.. ++.+..+..+ ...+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~--G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRD--GRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTT--SCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCC--CCEEEEEcCCCCccc
Confidence 46789999999999999999999999998766 46666666 678777 457889999983 5566666654 3578
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEEec------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 296 CGLKWSHDDRELASGGN-DNQLLVWNQHSQQPTLRLTE------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~-Dg~I~iwd~~~~~~~~~~~~------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
.++.+.++|+.+++.+. ++.|..+|. +++.+..+.. +......+++.++|..+++ .. .++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~-~~--~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVP-LF--ATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEE-ET--TTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEE-ec--CCCEEEEECCC-
Confidence 89999999999999887 778888886 6777666542 2234567788999996554 33 79999999998
Q ss_pred CceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC------cceEEEEECCCCCEEEEEe
Q 011916 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS------LRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~------~~V~~l~~spdg~~l~s~s 441 (475)
|+.+..+.....+..+...++++.+++ +..++.|..+|..+++.+.++..+. ..+..++..++|.++++..
T Consensus 155 G~~~w~~~~~~~~~~~~~~~~g~~~v~--~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 155 GQLLNSVKLSGTPFSSAFLDNGDCLVA--CGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp SCEEEEEECSSCCCEEEECTTSCEEEE--CBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred CCEEEEEECCCCccceeEcCCCCEEEE--eCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence 999999987777888899999999988 7777899999999999998886432 2378889999999888874
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-14 Score=139.48 Aligned_cols=230 Identities=9% Similarity=0.088 Sum_probs=154.4
Q ss_pred eeEEecCCC-CEEE-EEcC---C--eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-------------
Q 011916 171 LNLVDWSSQ-NVLA-VGLG---T--CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL------------- 230 (475)
Q Consensus 171 v~~l~ws~~-~~la-~~~~---~--~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d------------- 230 (475)
+..+.|||+ ..|+ ++.+ + .|++|++.+++...+... .. +.+++|+|||+.|+.++.+
T Consensus 61 ~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~--~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~ 137 (347)
T 2gop_A 61 ATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA--KN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV 137 (347)
T ss_dssp CEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE--SE-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred CCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC--CC-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence 567899997 4444 4432 2 489999999887777653 23 9999999999999988742
Q ss_pred --------------CeEEEEECCCCeeeEEecCCCCceEEEEeCCC-EEEEEeCCC-------cEEEEECCCCCccEEEe
Q 011916 231 --------------GQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSR-ILSSGSRDR-------NILQHDLRVSSDYICKL 288 (475)
Q Consensus 231 --------------g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~sgs~dg-------~I~iwd~~~~~~~~~~~ 288 (475)
..|.+||+.+++.+..+.. . .+..++|+++ +++++..++ ...+|.+. .+. ...+
T Consensus 138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d-~~~-~~~l 213 (347)
T 2gop_A 138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE-DGK-EEKM 213 (347)
T ss_dssp CCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE-TTE-EEEE
T ss_pred ceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeEEEEEecccccccccccccEEEeC-CCc-eEEe
Confidence 5799999998887455544 3 7788888432 677776542 44555554 343 3334
Q ss_pred cCccCCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEEEeccccceeE-EEECCCCCcEEEEecCCCCC
Q 011916 289 AGHKSEVCGLKWSHDDRELASGGND--------NQLLVWNQHSQQPTLRLTEHTAAVKA-IAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~~~~lasg~~D--------g~I~iwd~~~~~~~~~~~~h~~~v~~-l~~sp~~~~ll~sg~Gs~d~ 359 (475)
..+ ..+..+ +|||++|+.++.+ ..|++|| +++.......+...+.. +.|+ ++ +++++. .++
T Consensus 214 ~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg--~~~~~~--~~~ 283 (347)
T 2gop_A 214 FEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK--VYFTLF--EEG 283 (347)
T ss_dssp EEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE--EEEEEE--ETT
T ss_pred ccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc--EEEEEe--cCC
Confidence 344 555554 9999998887754 3688888 55544334456677886 9999 77 666554 789
Q ss_pred eEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeE-EEEECCCCceEEEecCCCcc
Q 011916 360 CIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQI-MVWKYPSMAKVSTLTGHSLR 424 (475)
Q Consensus 360 ~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I-~iwd~~~~~~~~~l~~h~~~ 424 (475)
.+++| +.+++....+.....+..+.|++ ..+++ +..++.. .+|.+. ++ ...+..|...
T Consensus 284 ~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~--~~~~~~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 284 SVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYL--KETATRLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp EEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEE--EECSSSCCEEEEES-SS-EEECCCTTST
T ss_pred cEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEE--EcCCCChHHheEeC-Cc-EEEeccccHh
Confidence 99999 87777655556667789999999 44444 3344433 566555 43 5556666544
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-13 Score=133.93 Aligned_cols=236 Identities=7% Similarity=-0.037 Sum_probs=174.7
Q ss_pred eEEecCCCCEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEecC
Q 011916 172 NLVDWSSQNVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 172 ~~l~ws~~~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~~~~~~~ 249 (475)
..+.+..+.++++.. ++.|.+||..+++.+..+. .......++++++++ |+++. .++.|.+||..+++....+..
T Consensus 47 ~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~~ 123 (328)
T 3dsm_A 47 QSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIEC 123 (328)
T ss_dssp EEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEEc
Confidence 445556666666665 6899999999999887774 346788999999985 55555 789999999999998877763
Q ss_pred CC-----CceEEEEeCCCEEEEEe--CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC---------
Q 011916 250 HQ-----TRAGVLAWNSRILSSGS--RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND--------- 313 (475)
Q Consensus 250 h~-----~~v~~l~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D--------- 313 (475)
.. .....+++++..|+++. .++.|.++|.. ..+.+..+.. ......+.++++|++++++..+
T Consensus 124 g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~-t~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~ 201 (328)
T 3dsm_A 124 PDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTE-TDKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYE 201 (328)
T ss_dssp TTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETT-TTEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBC
T ss_pred CCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECC-CCeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccC
Confidence 33 14455666666666665 48999999998 4555555543 2345688999999877776554
Q ss_pred -CcEEEEECCCCceeEEEecc-ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee--ecC-CCCeeEEEEcC
Q 011916 314 -NQLLVWNQHSQQPTLRLTEH-TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS--VDT-GSQVCNLAWSK 388 (475)
Q Consensus 314 -g~I~iwd~~~~~~~~~~~~h-~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~--~~~-~~~v~~l~~s~ 388 (475)
+.|.++|..+++....+... ......++|+|+++.++++ ++.|.+||..+++.... +.. ......++++|
T Consensus 202 ~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~-----~~~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 202 APSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWI-----NNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNP 276 (328)
T ss_dssp CCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEE-----SSSEEEEETTCSSCCSSCSBCCCSSCEEEEEECT
T ss_pred CceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEE-----ccEEEEEECCCCceeeeeeecCCCCceEEEEEcC
Confidence 78999999998877666432 2368999999999988775 33899999998876422 222 46788999999
Q ss_pred CCCeEEEEEe----cCCCeEEEEECCCCceEEEec
Q 011916 389 NVNELVSTHG----YSQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 389 ~~~~l~~~~g----~~dg~I~iwd~~~~~~~~~l~ 419 (475)
++..|+++ . ..++.|.+||.. ++.+.++.
T Consensus 277 ~~g~lyva-~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 277 NNGEVYVA-DAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp TTCCEEEE-ECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred CCCeEEEE-cccccccCCEEEEECCC-CCEEEEEE
Confidence 76666664 4 467899999988 88887775
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-14 Score=156.27 Aligned_cols=260 Identities=10% Similarity=-0.019 Sum_probs=175.5
Q ss_pred eEEEEECCCCcEEEEeeC-----CCCCcEEEEEEcCCCCEEEEEe-----CCCeEEEEECCCCeee-EEecCCCCceEEE
Q 011916 189 CVYLWTASNSKVTRLCDL-----GPGDSVCSVQWTREGSYISVGT-----NLGQVQVWDGTQCKRV-RTFGGHQTRAGVL 257 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~-----~~~~~V~~v~~spdg~~la~g~-----~dg~v~iwd~~~~~~~-~~~~~h~~~v~~l 257 (475)
.|++.+..+++...+++. +|...+.+++|||||++||.+. .+..|++||+.+++.+ .... .......+
T Consensus 95 ~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~ 173 (695)
T 2bkl_A 95 ILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATP 173 (695)
T ss_dssp EEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCC
T ss_pred EEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-Ccccccce
Confidence 455555555555555432 2344689999999999999543 3468999999998865 2111 11112678
Q ss_pred Ee--CCCEEEEEeCCCc-------------EEEEECCCCCc---cEEEecCccCCEEEEEEcCCCCEEEEEeCCC----c
Q 011916 258 AW--NSRILSSGSRDRN-------------ILQHDLRVSSD---YICKLAGHKSEVCGLKWSHDDRELASGGNDN----Q 315 (475)
Q Consensus 258 ~~--~~~~l~sgs~dg~-------------I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg----~ 315 (475)
+| +++.|+.++.|.. |++|++..... .+.....|...+.++.|+|||++|+.++.++ .
T Consensus 174 ~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~ 253 (695)
T 2bkl_A 174 KWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEND 253 (695)
T ss_dssp EECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEE
T ss_pred EEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceE
Confidence 88 5678998888776 99999985442 2223334556789999999999998887666 7
Q ss_pred EEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEec-CCCCCeEEEEECCCCce---eeeecC--CCCeeEEEEcCC
Q 011916 316 LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG-GTADRCIRFWNTSNGHQ---LNSVDT--GSQVCNLAWSKN 389 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~~~---~~~~~~--~~~v~~l~~s~~ 389 (475)
|++||..+++ ...+..+...+....| +++. +++... +..++.|.+||+.++.. ...+.+ ...+..+.|+ +
T Consensus 254 l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~ 329 (695)
T 2bkl_A 254 VYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G 329 (695)
T ss_dssp EEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T
T ss_pred EEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C
Confidence 8888766554 4455556666667777 6666 665542 11368999999988763 333333 3457778888 4
Q ss_pred CCeEEEEEecCCCeEEEEECC-CCceEEEecCC-CcceEEEEECCCCCEEEEE----eCCCCEEEEecCCCC
Q 011916 390 VNELVSTHGYSQNQIMVWKYP-SMAKVSTLTGH-SLRVLYLATSPDGQTIVTG----AGDETLRFWNVFPSL 455 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~-~~~~~~~l~~h-~~~V~~l~~spdg~~l~s~----s~Dg~I~iW~~~~~~ 455 (475)
+..+++ ...++..+||.+. +++.+..+..+ .+.|..++++||+..|+.. ...++|++||+.+++
T Consensus 330 ~~lv~~--~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 330 GHLSLE--YLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp TEEEEE--EEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CEEEEE--EEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 444454 5677877777554 45566667655 6678889999999877733 235789999998765
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-14 Score=137.13 Aligned_cols=237 Identities=10% Similarity=0.078 Sum_probs=172.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
..|.++.|++++..++....++.++.| .++....+..+...+.+++|+ +++++++..++.|.+||.. .+.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~-~~~~~~~ 81 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPE-TKEIKRP 81 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEE
T ss_pred cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCC-CCcEEEE
Confidence 457788899988877777788899999 456666777777788999995 5777788889999999987 3343333
Q ss_pred ecCccCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEecC---CCC
Q 011916 288 LAGHKSEVCGLKWSHDDRELASGGND----NQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGG---TAD 358 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~~~~~lasg~~D----g~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~G---s~d 358 (475)
...+...+.+++|+++|+++++...+ +.|.+||..++.....+. .+...+.+++++|++..++++..+ ...
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~ 161 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPL 161 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCC
Confidence 33566789999999999988887766 689999998876543333 244578999999999744443210 013
Q ss_pred CeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC-CceEE--------EecCCCcceEEEE
Q 011916 359 RCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS-MAKVS--------TLTGHSLRVLYLA 429 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~-~~~~~--------~l~~h~~~V~~l~ 429 (475)
+.|..+|..+++..........+..++|+|+++.|+++ ...++.|.+||+.+ +..+. .+.++ ..+..++
T Consensus 162 ~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~-~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~ 239 (333)
T 2dg1_A 162 GGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT-ETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCC 239 (333)
T ss_dssp EEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE-EGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEE
T ss_pred ceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEE-eCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceE
Confidence 66777877666554443334567889999999977664 45678999999863 33221 12222 4678899
Q ss_pred ECCCCCEEEEEeCCCCEEEEecC
Q 011916 430 TSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 430 ~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
++++|.++++...++.|.+|+..
T Consensus 240 ~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 240 IDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EBTTCCEEEEEETTTEEEEECTT
T ss_pred ECCCCCEEEEEcCCCEEEEECCC
Confidence 99999988888888999999984
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-11 Score=116.59 Aligned_cols=270 Identities=11% Similarity=-0.016 Sum_probs=185.0
Q ss_pred CceeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-
Q 011916 169 FYLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR- 245 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~- 245 (475)
.....+.++++ +++++.. ++.|.+|+.. ++............+.++++.++|+++++...++.|..||.. ++...
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~ 97 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEY 97 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEe
Confidence 34567777776 5666654 6899999988 666553221234679999999999877776667899999987 55432
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
.+......+..++++ +.++++...++.|..+|.. .......+......+.++++.++++++++...++.|.+||. +
T Consensus 98 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~ 175 (300)
T 2qc5_A 98 PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-T 175 (300)
T ss_dssp ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-T
T ss_pred cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-C
Confidence 222344678888885 5666666668899999886 32222223334567899999999997776666789999998 5
Q ss_pred CceeEE-EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 324 QQPTLR-LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 324 ~~~~~~-~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
++.... ...+...+.++++.+++. ++++.. ..+.|.+||. +++..... .....+..++++++|+.+++ ...
T Consensus 176 g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~ 249 (300)
T 2qc5_A 176 GKLEEYPLPTNAAAPVGITSGNDGA-LWFVEI--MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFT--EWG 249 (300)
T ss_dssp CCEEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEE--ETT
T ss_pred CcEEEeeCCCCCCCcceEEECCCCC-EEEEcc--CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEe--ccC
Confidence 544321 223445688999999986 555543 4678999998 55544332 23456889999999986665 455
Q ss_pred CCeEEEEECCCCceE-EEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 401 QNQIMVWKYPSMAKV-STLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 401 dg~I~iwd~~~~~~~-~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
++.|..|+. +++.. ..+......+.++++.++|.++++.. . .|..++.
T Consensus 250 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 250 ANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp TTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 789999998 44433 22333456689999999998666554 4 5555554
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-13 Score=128.29 Aligned_cols=235 Identities=10% Similarity=0.086 Sum_probs=167.9
Q ss_pred CcEEEEEEcCCCCEEEE-------EeCCCeEEEEECCCCeeeEEec----CCCCceEEEEeCC--CEEEEEeCCCcEEEE
Q 011916 210 DSVCSVQWTREGSYISV-------GTNLGQVQVWDGTQCKRVRTFG----GHQTRAGVLAWNS--RILSSGSRDRNILQH 276 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~-------g~~dg~v~iwd~~~~~~~~~~~----~h~~~v~~l~~~~--~~l~sgs~dg~I~iw 276 (475)
....+++|+++|.++++ +..++.|.+||..+++...... ++...+..+++++ ..|..++..+.|.+|
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~ 97 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEE
Confidence 45679999999987777 5778999999988776543322 2446788898853 455556555689999
Q ss_pred ECCCCCccEEEe-cC-----ccCCEEEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCceeEEEecccc
Q 011916 277 DLRVSSDYICKL-AG-----HKSEVCGLKWSHDDRELASGGND---------------NQLLVWNQHSQQPTLRLTEHTA 335 (475)
Q Consensus 277 d~~~~~~~~~~~-~~-----h~~~V~~l~~s~~~~~lasg~~D---------------g~I~iwd~~~~~~~~~~~~h~~ 335 (475)
|.. +.. ..+ .. ....+.+++++++|+++++...+ +.|..||.. ++.. .+..+..
T Consensus 98 d~~--g~~-~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~ 172 (314)
T 1pjx_A 98 QTD--GTF-EEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQ 172 (314)
T ss_dssp ETT--SCE-EECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEES
T ss_pred eCC--CCE-EEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEE-EeccCCC
Confidence 986 332 222 11 12358899999999888776654 567778766 4433 3333445
Q ss_pred ceeEEEEC----CCCCcEEEEecCCCCCeEEEEECC-CCce-----eeeecCC--CCeeEEEEcCCCCeEEEEEecCCCe
Q 011916 336 AVKAIAWS----PHQSSLLASGGGTADRCIRFWNTS-NGHQ-----LNSVDTG--SQVCNLAWSKNVNELVSTHGYSQNQ 403 (475)
Q Consensus 336 ~v~~l~~s----p~~~~ll~sg~Gs~d~~I~iwd~~-~~~~-----~~~~~~~--~~v~~l~~s~~~~~l~~~~g~~dg~ 403 (475)
....++|+ |+++.++++.. .++.|.+||+. +++. ...+... ..+..++++++|+.+++ ...++.
T Consensus 173 ~~~~i~~~~~~d~dg~~l~v~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~--~~~~~~ 248 (314)
T 1pjx_A 173 FPNGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA--NWGSSH 248 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE--EETTTE
T ss_pred CcceEEEecccCCCCCEEEEEEC--CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEE--EcCCCE
Confidence 56889999 99987777754 67899999976 4432 2222222 45788999999987776 556789
Q ss_pred EEEEECCCCceEEEecCCCcceEEEEECCCCCEEE-EEeCCCCEEEEecCC
Q 011916 404 IMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIV-TGAGDETLRFWNVFP 453 (475)
Q Consensus 404 I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~-s~s~Dg~I~iW~~~~ 453 (475)
|.+||..+++.+..+..+...+.+++|+++|+.|+ +...++.|..|++..
T Consensus 249 i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 249 IEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999987777777777778899999999999554 455568899999874
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-13 Score=126.04 Aligned_cols=237 Identities=8% Similarity=-0.034 Sum_probs=161.7
Q ss_pred CceeEEecCCC-CEEE-E-EcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 169 FYLNLVDWSSQ-NVLA-V-GLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la-~-~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
+....++++++ ++++ + ..++.|++|+..+....... ......+.+++++++|+++++.. ++.|.+||........
T Consensus 24 ~~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~ 101 (270)
T 1rwi_B 24 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV 101 (270)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE
T ss_pred CCccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee
Confidence 36677888876 5555 4 34789999998766543322 23345678999999998555555 8899999987654432
Q ss_pred EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 011916 246 TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~ 323 (475)
........+..++++ ++++++...++.|.+|+... .............+.+++++++|+++++...++.|.+||...
T Consensus 102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~-~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~ 180 (270)
T 1rwi_B 102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGS-KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES 180 (270)
T ss_dssp CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTC-CSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCC-ceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence 222333567888885 56777767788999997652 222222223334678899999999777777778999999887
Q ss_pred CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 324 ~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
.........+...+.+|++.++|. ++++.. .++.|.+||..+........ ....+..++++++|+.+++ ...++
T Consensus 181 ~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~--~~~~~ 255 (270)
T 1rwi_B 181 NNQVVLPFTDITAPWGIAVDEAGT-VYVTEH--NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVA--DRGND 255 (270)
T ss_dssp CCEEECCCSSCCSEEEEEECTTCC-EEEEET--TTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEE--EGGGT
T ss_pred CceEeecccCCCCceEEEECCCCC-EEEEEC--CCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEE--ECCCC
Confidence 654433233336688999999995 666643 57899999987654433222 2356899999999986665 66789
Q ss_pred eEEEEECCCCc
Q 011916 403 QIMVWKYPSMA 413 (475)
Q Consensus 403 ~I~iwd~~~~~ 413 (475)
.|.+|++...+
T Consensus 256 ~v~~~~~~~~~ 266 (270)
T 1rwi_B 256 RVVKLTSLEHH 266 (270)
T ss_dssp EEEEECCCGGG
T ss_pred EEEEEcCCCcc
Confidence 99999987654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.60 E-value=8e-13 Score=125.11 Aligned_cols=209 Identities=12% Similarity=0.089 Sum_probs=158.2
Q ss_pred CCCCEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC-Cce
Q 011916 177 SSQNVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ-TRA 254 (475)
Q Consensus 177 s~~~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~-~~v 254 (475)
+|+++++++. ++.|++||.++++.+-.+..+....+.++.++|+|++|+ +.++.|..||. +++.+..+..+. ..+
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 4666655554 899999999999988777643324688999999999888 45678999998 899999988653 466
Q ss_pred EEEEe--CCCEEEEEeC-CCcEEEEECCCCCccEEEec------CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 255 GVLAW--NSRILSSGSR-DRNILQHDLRVSSDYICKLA------GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 255 ~~l~~--~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
.++.+ +++++++.+. ++.|..+|. .++.+..+. .+......+.+.++|+++++...++.|.+||.. ++
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~--~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM--KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQ 156 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT--TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC--CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CC
Confidence 66666 6889888887 777777775 345444432 122345566788999999999999999999998 99
Q ss_pred eeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-------CCeeEEEEcCCCCeEEE
Q 011916 326 PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-------SQVCNLAWSKNVNELVS 395 (475)
Q Consensus 326 ~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-------~~v~~l~~s~~~~~l~~ 395 (475)
.+.++... ..+.++...+++..+++. . .++.|..+|..+|+.+..+... ..+..++..++|+.+++
T Consensus 157 ~~w~~~~~-~~~~~~~~~~~g~~~v~~-~--~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~ 229 (276)
T 3no2_A 157 LLNSVKLS-GTPFSSAFLDNGDCLVAC-G--DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYIC 229 (276)
T ss_dssp EEEEEECS-SCCCEEEECTTSCEEEEC-B--TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEE
T ss_pred EEEEEECC-CCccceeEcCCCCEEEEe-C--CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEE
Confidence 88888754 456678888998855553 2 5778999999999999888521 12677778888887776
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.4e-13 Score=143.99 Aligned_cols=252 Identities=13% Similarity=0.068 Sum_probs=174.2
Q ss_pred CceeccCCCCCC--CCceeEEecCCC-CEEEEEc--CC----eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 156 PHKVLDAPSLQD--DFYLNLVDWSSQ-NVLAVGL--GT----CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 156 p~~~l~~p~~~~--d~~v~~l~ws~~-~~la~~~--~~----~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
+..+++...+.. .+.+..++|||+ +.++.+. +| .|++||+.+++...... .+ ..+.+++|+|||+.|+.
T Consensus 110 ~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspDg~~l~~ 187 (710)
T 2xdw_A 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ER-VKFSCMAWTHDGKGMFY 187 (710)
T ss_dssp CEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EE-ECSCCEEECTTSSEEEE
T ss_pred cEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cC-cccceEEEEeCCCEEEE
Confidence 344455443332 246788999998 5555443 22 89999999998776432 21 22668999999999999
Q ss_pred EeCCCe----------------EEEEECCCCee--eEEec--CCCCceEEEEe--CCCEEEEEeC-----CCcEEEEECC
Q 011916 227 GTNLGQ----------------VQVWDGTQCKR--VRTFG--GHQTRAGVLAW--NSRILSSGSR-----DRNILQHDLR 279 (475)
Q Consensus 227 g~~dg~----------------v~iwd~~~~~~--~~~~~--~h~~~v~~l~~--~~~~l~sgs~-----dg~I~iwd~~ 279 (475)
++.++. |++|++.+++. ...+. .|...+..+.| ++++|+.++. +..|.+||+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~ 267 (710)
T 2xdw_A 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (710)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred EEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECc
Confidence 988766 99999988752 22223 35566778888 5677777654 5689999997
Q ss_pred C------CCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC----cEEEEECCCCce--eEEEecccc--ceeEEEECCC
Q 011916 280 V------SSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN----QLLVWNQHSQQP--TLRLTEHTA--AVKAIAWSPH 345 (475)
Q Consensus 280 ~------~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg----~I~iwd~~~~~~--~~~~~~h~~--~v~~l~~sp~ 345 (475)
. .......+..+...+.. .|+++|+.|+..++++ .|.+||+.++.. ...+..|.. .+..++|+++
T Consensus 268 ~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 346 (710)
T 2xdw_A 268 QESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS 346 (710)
T ss_dssp GSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETT
T ss_pred ccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcC
Confidence 4 22245556666666655 4889999888776543 699999987642 344555544 6888999865
Q ss_pred CCcEEEEecCCCCC--eEEEEECCCCceeeeecC-CCCeeEEEEcCCCCeEEEEEe--cCCCeEEEEECCCCc
Q 011916 346 QSSLLASGGGTADR--CIRFWNTSNGHQLNSVDT-GSQVCNLAWSKNVNELVSTHG--YSQNQIMVWKYPSMA 413 (475)
Q Consensus 346 ~~~ll~sg~Gs~d~--~I~iwd~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g--~~dg~I~iwd~~~~~ 413 (475)
+. ++++.. .++ .|.+||+.+|+.+..+.. ...+..+.++|+++.++.+.. ...+.|++||+.+++
T Consensus 347 ~~-lv~~~~--~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 347 NF-LVLCYL--HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp TE-EEEEEE--ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CE-EEEEEE--ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 54 666654 566 567788878887766653 456788999999988776422 245789999998876
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.5e-13 Score=126.61 Aligned_cols=229 Identities=11% Similarity=0.105 Sum_probs=161.8
Q ss_pred ceeEEecCCC-C-EEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 170 YLNLVDWSSQ-N-VLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+...+.|+++ + ++.++. ++.|+.|+..++ . ..+. .+...+.+++++++|+++++...++.|.+||..+++....
T Consensus 29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~~~~-~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~ 105 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-SPEM-HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI 105 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-EEEE-SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE
T ss_pred cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-EEEE-CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE
Confidence 4667999986 5 555554 789999999988 3 4443 4567899999999999877776778999999988776544
Q ss_pred ecCC----CCceEEEEeC--CCEEEEE----e-------------CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC
Q 011916 247 FGGH----QTRAGVLAWN--SRILSSG----S-------------RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 247 ~~~h----~~~v~~l~~~--~~~l~sg----s-------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~ 303 (475)
.... ...+..++++ |+++++. + ..+.|..++.. + ....+..+.....+++|+|+
T Consensus 106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g-~~~~~~~~~~~~~gi~~s~d 182 (296)
T 3e5z_A 106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G-TLSAPIRDRVKPNGLAFLPS 182 (296)
T ss_dssp ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S-CEEEEECCCSSEEEEEECTT
T ss_pred eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--C-CEEEeecCCCCCccEEECCC
Confidence 3321 2245567774 6777763 2 12345555543 3 34445566677899999999
Q ss_pred CCEEEEEeCCCcEEEEECC-CCce---eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC
Q 011916 304 DRELASGGNDNQLLVWNQH-SQQP---TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS 379 (475)
Q Consensus 304 ~~~lasg~~Dg~I~iwd~~-~~~~---~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~ 379 (475)
++.|++.+.++.|++||+. .++. ...+..+...+.+++++++|. ++++. ++.|.+||.. ++.+..+....
T Consensus 183 g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~----~~~v~~~~~~-g~~~~~~~~~~ 256 (296)
T 3e5z_A 183 GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA----GDGVHVLTPD-GDELGRVLTPQ 256 (296)
T ss_dssp SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE----TTEEEEECTT-SCEEEEEECSS
T ss_pred CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc----CCeEEEECCC-CCEEEEEECCC
Confidence 9998777778999999997 4443 233333556678999999998 55442 6889999986 77777776444
Q ss_pred CeeEEEE-cCCCCeEEEEEecCCCeEEEEECCCCc
Q 011916 380 QVCNLAW-SKNVNELVSTHGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 380 ~v~~l~~-s~~~~~l~~~~g~~dg~I~iwd~~~~~ 413 (475)
.+.+++| .++++.|++ +.. +.+.-++..+.+
T Consensus 257 ~~~~~~f~~~d~~~L~v--~t~-~~l~~~~~~~~~ 288 (296)
T 3e5z_A 257 TTSNLCFGGPEGRTLYM--TVS-TEFWSIETNVRG 288 (296)
T ss_dssp CCCEEEEESTTSCEEEE--EET-TEEEEEECSCCB
T ss_pred CceeEEEECCCCCEEEE--EcC-CeEEEEEccccc
Confidence 4899999 589998888 333 456666766554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-11 Score=121.63 Aligned_cols=257 Identities=10% Similarity=-0.023 Sum_probs=179.0
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEecCC-------C
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT----------NLGQVQVWDGTQCKRVRTFGGH-------Q 251 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~----------~dg~v~iwd~~~~~~~~~~~~h-------~ 251 (475)
.|.++|..+++++..+..+. . - .++++|||++|+++. .++.|.+||..+.+.+..+... .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~-~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g 124 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGF-L-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVG 124 (373)
T ss_pred EEEEEECCCCeEEEEecCCC-C-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccC
Confidence 89999999999887775432 2 2 999999999999986 3678999999998888776432 1
Q ss_pred CceEEEEe--CCCEEEEEeC--CCcEEEEECCCCCccEEE-ecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 011916 252 TRAGVLAW--NSRILSSGSR--DRNILQHDLRVSSDYICK-LAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 252 ~~v~~l~~--~~~~l~sgs~--dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~ 325 (475)
.....+.| ++++|+++.. ++.|.++| . .++.+.. +.. .. ++.+.+++ +.+++.+.||.+.++|. +++
T Consensus 125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~-t~~~~~~~i~~-~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q-GGSSDDQLLSS-PT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred CCccceEECCCCCEEEEEecCCCCeEEEEE-C-CCCEEeEEcCC-Cc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 12335556 6788888774 57899999 7 5555555 432 22 23444544 45667778999999999 777
Q ss_pred eeEEEe-----ccccc-eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeecC-----------CCCeeEEEE
Q 011916 326 PTLRLT-----EHTAA-VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH--QLNSVDT-----------GSQVCNLAW 386 (475)
Q Consensus 326 ~~~~~~-----~h~~~-v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~--~~~~~~~-----------~~~v~~l~~ 386 (475)
.+.... ....+ .....+.+++..++... ..+.+.+.|+.++. .+..+.. ......+.+
T Consensus 198 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV---YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred EEEEEeccccccCCcceeecceeEecCCEEEEEc---CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 653321 11111 12345666666555543 47899999987653 2222221 122344789
Q ss_pred cCCCCeEEEEEec--------CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEEe-CCCCEEEEecCCCCC
Q 011916 387 SKNVNELVSTHGY--------SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTGA-GDETLRFWNVFPSLK 456 (475)
Q Consensus 387 s~~~~~l~~~~g~--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iW~~~~~~~ 456 (475)
+++++.++++... ..+.|.++|..+++.+.++.. .....+++|+|||+ .++++. .++.|.+||+.+.+.
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~v 353 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ 353 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCE
Confidence 9999998885321 246899999999999988863 33589999999999 788777 589999999999887
Q ss_pred CCC
Q 011916 457 APA 459 (475)
Q Consensus 457 ~~~ 459 (475)
...
T Consensus 354 v~~ 356 (373)
T 2mad_H 354 DQS 356 (373)
T ss_pred Eee
Confidence 766
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-11 Score=116.21 Aligned_cols=235 Identities=9% Similarity=-0.009 Sum_probs=169.1
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE-ecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT-FGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~-~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+...+.++++.++|+++++...++.|.+||.. ++.... ...+...+..++++ +.++++...++.|..||.. ....
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 90 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIK 90 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEE
Confidence 44689999999999977766667899999988 544332 22345678889884 5666666668899999976 2221
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-EeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLR-LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~-~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
...+......+.++++.++|+++++...++.|.+||. +++.... ...+...+..+++.+++. ++++.. .++.|..
T Consensus 91 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~--~~~~i~~ 166 (299)
T 2z2n_A 91 EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNA-LWFTEN--QNNAIGR 166 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSC-EEEEET--TTTEEEE
T ss_pred EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCC-EEEEeC--CCCEEEE
Confidence 2222234567999999999988888777889999998 5543322 223456789999999987 555443 5789999
Q ss_pred EECCCCceeee-e-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE-ecCCCcceEEEEECCCCCEEEEE
Q 011916 364 WNTSNGHQLNS-V-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST-LTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 364 wd~~~~~~~~~-~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
||. +++.... . .....+..++++++++.+++ ...++.|.+||. +++.... +..+...+.+++++++|.++++.
T Consensus 167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 242 (299)
T 2z2n_A 167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFV--EIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTE 242 (299)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEE--ccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEec
Confidence 998 6665543 2 23456889999999886665 556789999998 6654332 33455678999999999977776
Q ss_pred eCCCCEEEEecC
Q 011916 441 AGDETLRFWNVF 452 (475)
Q Consensus 441 s~Dg~I~iW~~~ 452 (475)
..++.|..|+..
T Consensus 243 ~~~~~i~~~d~~ 254 (299)
T 2z2n_A 243 WGANKIGRLTSN 254 (299)
T ss_dssp TTTTEEEEEETT
T ss_pred cCCceEEEECCC
Confidence 677889999973
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.4e-13 Score=144.04 Aligned_cols=241 Identities=12% Similarity=0.016 Sum_probs=160.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEEecCCCCceEEEEeCC-CEEEEEeCCCc-----------
Q 011916 210 DSVCSVQWTREGSYISVGTNL-----GQVQVWDGTQCKRVRTFGGHQTRAGVLAWNS-RILSSGSRDRN----------- 272 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~d-----g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~-~~l~sgs~dg~----------- 272 (475)
..+..++|||||++||.+..+ ..|++||+.+++.+... .+...+..++|.+ +.|+.++.++.
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~ 241 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNY 241 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTTSEEEEEECCCC--------CCC
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECCCEEEEEEecCcccccccccCCC
Confidence 368899999999999987764 36999999999876532 1222235678843 67877776554
Q ss_pred ---EEEEECCCCCcc-EEEec--CccCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCC--ceeEEEeccccceeE
Q 011916 273 ---ILQHDLRVSSDY-ICKLA--GHKSEVCGLKWSHDDRELASGGNDN-----QLLVWNQHSQ--QPTLRLTEHTAAVKA 339 (475)
Q Consensus 273 ---I~iwd~~~~~~~-~~~~~--~h~~~V~~l~~s~~~~~lasg~~Dg-----~I~iwd~~~~--~~~~~~~~h~~~v~~ 339 (475)
|.+|++.+.... ...+. .+...+.++.|+|||++|+..+.++ .|++||+.++ +....+..+...+..
T Consensus 242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~ 321 (741)
T 1yr2_A 242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD 321 (741)
T ss_dssp CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence 889998644321 22232 3334589999999999988877543 8999999877 314555555555555
Q ss_pred EEECCCCCcEEEEec-CCCCCeEEEEECCCC--ceeeeecCC-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECC-CCce
Q 011916 340 IAWSPHQSSLLASGG-GTADRCIRFWNTSNG--HQLNSVDTG-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP-SMAK 414 (475)
Q Consensus 340 l~~sp~~~~ll~sg~-Gs~d~~I~iwd~~~~--~~~~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~-~~~~ 414 (475)
..+ |++..|++... +..++.|.+||+.++ +....+.+. ..+..+.|+ ++..+++ ...++..+||.+. ++..
T Consensus 322 ~~~-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~--~~~dg~~~l~~~~~~g~~ 397 (741)
T 1yr2_A 322 FVD-GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFAS--YIHDAKSQVLAFDLDGKP 397 (741)
T ss_dssp EEE-EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEE--EEETTEEEEEEEETTSCE
T ss_pred EEe-ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEE--EEECCEEEEEEEeCCCCc
Confidence 544 88887777653 112567999999885 233333333 335567777 3334444 5567766666543 4556
Q ss_pred EEEecC-CCcceEEEEECCCCCEEEEE----eCCCCEEEEecCCCC
Q 011916 415 VSTLTG-HSLRVLYLATSPDGQTIVTG----AGDETLRFWNVFPSL 455 (475)
Q Consensus 415 ~~~l~~-h~~~V~~l~~spdg~~l~s~----s~Dg~I~iW~~~~~~ 455 (475)
+..+.. +.+.|..+.++||+..|+.. ...++|++||+.+++
T Consensus 398 ~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 398 AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 666665 46778999999998766532 235789999997654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-11 Score=119.40 Aligned_cols=241 Identities=6% Similarity=-0.040 Sum_probs=168.2
Q ss_pred EEecCCC-CEEEEEc-----------CCeEEEEECCCCcEEEEeeCC-C-----CCcEEEEEEcCCCCEEEEEeC--CCe
Q 011916 173 LVDWSSQ-NVLAVGL-----------GTCVYLWTASNSKVTRLCDLG-P-----GDSVCSVQWTREGSYISVGTN--LGQ 232 (475)
Q Consensus 173 ~l~ws~~-~~la~~~-----------~~~V~lw~~~~~~~~~~~~~~-~-----~~~V~~v~~spdg~~la~g~~--dg~ 232 (475)
.+.++|+ +.+.++. ++.|.+||..+.+....+.++ . ......+.|+|||++|+++.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 5778887 4555542 578999999999888777653 1 133458999999999999874 478
Q ss_pred EEEEECCCCeeeEE-ecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEec-----CccCC-EEEEEEcCCCC
Q 011916 233 VQVWDGTQCKRVRT-FGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLA-----GHKSE-VCGLKWSHDDR 305 (475)
Q Consensus 233 v~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~~~-V~~l~~s~~~~ 305 (475)
|.++| .+++.+.. +... ..+....+.+..+++.+.||.+.++|. ... ...... ..... .....+.+++.
T Consensus 150 v~viD-~t~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 225 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSP-TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGG-AAGAGLVGAMLTAAQNLLTQPAQANKSG 225 (373)
T ss_pred EEEEE-CCCCEEeEEcCCC-ceEEEEeCCCceEEEEcCCCCEEEEEC-CCc-EEEEEeccccccCCcceeecceeEecCC
Confidence 99999 99998887 6532 223333344567788889999999999 333 332111 11112 12345666666
Q ss_pred EEEEEeCCCcEEEEECCCCce--eEEEec----------cccceeEEEECCCCCcEEEEecCC-------CCCeEEEEEC
Q 011916 306 ELASGGNDNQLLVWNQHSQQP--TLRLTE----------HTAAVKAIAWSPHQSSLLASGGGT-------ADRCIRFWNT 366 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~--~~~~~~----------h~~~v~~l~~sp~~~~ll~sg~Gs-------~d~~I~iwd~ 366 (475)
.++..+..+.+.+.|+..... +..+.. .......++++|+++.++++.... ..+.|.++|+
T Consensus 226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~ 305 (373)
T 2mad_H 226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG 305 (373)
T ss_pred EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence 555555778999999975532 222211 122344578999999888864210 1368999999
Q ss_pred CCCceeeeecCCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 367 SNGHQLNSVDTGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 367 ~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
.+++.+..+..+.....+.|+|+|+ .++++ ...++.|.+||..+++.+..+
T Consensus 306 ~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~-~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 306 LVGQTSSQISLGHDVDAISVAQDGGPDLYAL-SAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred CCCEEEEEEECCCCcCeEEECCCCCeEEEEE-cCCCCeEEEEECCCCCEEeee
Confidence 9999999998888899999999999 55552 446899999999999998874
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=4.8e-12 Score=124.21 Aligned_cols=263 Identities=13% Similarity=0.095 Sum_probs=183.0
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEecCCC-----
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT----------NLGQVQVWDGTQCKRVRTFGGHQ----- 251 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~----------~dg~v~iwd~~~~~~~~~~~~h~----- 251 (475)
++.|++.|..+++++..+..+.. + .++++|||++|+++. .++.|.+||..+.+.+.++....
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~-P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~ 134 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFL-P--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 134 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred CCEEEEEECCCCeEEEEEECCCC-C--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccc
Confidence 46999999999999988876543 3 399999999988876 35789999999999988875221
Q ss_pred --CceEEEEe--CCCEEEEEeC--CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-C
Q 011916 252 --TRAGVLAW--NSRILSSGSR--DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS-Q 324 (475)
Q Consensus 252 --~~v~~l~~--~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~-~ 324 (475)
.....+++ ++++++++.. ++.|.++|+. ..+.+..+..-. +...+....+.+++.+.||.+.+.++.. +
T Consensus 135 ~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~-t~~vv~tI~v~g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g 210 (386)
T 3sjl_D 135 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDVPD---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 210 (386)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECCS---EEEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred cCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC-CCcEEEEEECCC---cceeecCCCceeEEECCCCCEEEEECCCCC
Confidence 12334455 6888888764 6899999998 556666654321 1223333456777888899999999876 5
Q ss_pred ceeEEEeccc----cce-eEEEE-CCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeec-----------CCCCeeEEE
Q 011916 325 QPTLRLTEHT----AAV-KAIAW-SPHQSSLLASGGGTADRCIRFWNTSNGH--QLNSVD-----------TGSQVCNLA 385 (475)
Q Consensus 325 ~~~~~~~~h~----~~v-~~l~~-sp~~~~ll~sg~Gs~d~~I~iwd~~~~~--~~~~~~-----------~~~~v~~l~ 385 (475)
+.......+. ..+ ...+| .++|+.++++ .++.|++.|+.++. .+..+. .......++
T Consensus 211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs----~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a 286 (386)
T 3sjl_D 211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPT----YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 286 (386)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEB----TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEE
T ss_pred eEEEeecceeccccccccccceeEcCCCcEEEEe----CCCEEEEEECCCCcceeecceeccccccccccccCCCcceee
Confidence 5432221111 112 22456 4677655543 57999999997664 333332 112344577
Q ss_pred EcCCCCeEEEEEec--------CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEE-eCCCCEEEEecCCCC
Q 011916 386 WSKNVNELVSTHGY--------SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTG-AGDETLRFWNVFPSL 455 (475)
Q Consensus 386 ~s~~~~~l~~~~g~--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~-s~Dg~I~iW~~~~~~ 455 (475)
++++++.++++... ..+.|.++|+.+++.+..+... .++..|++++|++ +|+++ ..++.|.++|..+++
T Consensus 287 ~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 287 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence 89999999986431 1357999999999999888632 3688999999997 66665 458999999999888
Q ss_pred CCCCcc
Q 011916 456 KAPALV 461 (475)
Q Consensus 456 ~~~~~~ 461 (475)
....+.
T Consensus 366 ~~~~i~ 371 (386)
T 3sjl_D 366 ELRSVN 371 (386)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 766543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=134.39 Aligned_cols=273 Identities=13% Similarity=0.094 Sum_probs=182.0
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCc---------EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSK---------VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~---------~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
.++++++++. ++++++....+.+|+..+.. ........... |+.|+| |+++|+++ .+|.|++||+.
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~ 114 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE 114 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence 4788999986 78888887888889865433 11111113455 999999 99999999 78999999998
Q ss_pred CCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011916 240 QCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iw 319 (475)
+.........|...+.++.+.+..+++++.||.|.+||+.... ... +...|.+++|||+| ++.|..||++++|
T Consensus 115 sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~-~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~ 187 (388)
T 1xip_A 115 ELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKS-TKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSF 187 (388)
T ss_dssp STTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCC-EEE----EEESEEEEEECSSE--EEEEETTSCEEEE
T ss_pred hhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCc-ccc----ccCCceEEEEcCCc--eEEEEcCCcEEEE
Confidence 8776666777788898888865559999999999999998433 322 45689999999999 7889999999999
Q ss_pred ECCCCce--eEEE------e---ccccceeEEEECCCCCcEEEEecCC---C-----CCeEEEEECCCCcee-eee-c--
Q 011916 320 NQHSQQP--TLRL------T---EHTAAVKAIAWSPHQSSLLASGGGT---A-----DRCIRFWNTSNGHQL-NSV-D-- 376 (475)
Q Consensus 320 d~~~~~~--~~~~------~---~h~~~v~~l~~sp~~~~ll~sg~Gs---~-----d~~I~iwd~~~~~~~-~~~-~-- 376 (475)
+...++. ..++ . +|...|.+|.|.+++.++++-+... . +..+++.+...+... ..+ +
T Consensus 188 ~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~~~~~~~~~~~~~~~~~ii~~~~~~~~f~~~~d~~ 267 (388)
T 1xip_A 188 AWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGNVISETDDEVSYDQKMYIIKHIDGSASFQETFDIT 267 (388)
T ss_dssp EEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEECCCCSSCSSCCCCEEEEEEEEETTEEEEEEESSSC
T ss_pred cCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcCCCCCcCcccCCcceEEEEEcCCCCceeEccccCc
Confidence 9887764 4555 2 3778999999999988776644311 1 225677663222211 111 1
Q ss_pred --CCC-----C---eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-------------CCCcceEEEEECC-
Q 011916 377 --TGS-----Q---VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-------------GHSLRVLYLATSP- 432 (475)
Q Consensus 377 --~~~-----~---v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-------------~h~~~V~~l~~sp- 432 (475)
.+. . ..--.|.|+.+.|+.++....-.|-+++-. +.+..+. ..+....++++.-
T Consensus 268 ~~fg~~~R~~~~~~~~l~~w~~~~~~l~iv~Ss~S~di~il~~~--~~~~~~~Ds~Ra~lPl~~~~~~Dt~piG~alD~s 345 (388)
T 1xip_A 268 PPFGQIVRFPYMYKVTLSGLIEPDANVNVLASSCSSEVSIWDSK--QVIEPSQDSERAVLPISEETDKDTNPIGVAVDVV 345 (388)
T ss_dssp CCCCCSCCCCCEEEEEEEEEEETTEEEEEEEETTCSBCEEECSS--SEEEESSGGGCCBCCBCTTTCCBCCEEEEEEECS
T ss_pred CCcCCccCCceeeeeehhcccccCCcEEEEeCCCCcceEEeccc--cEEeecCccccceeccCCCCCCCCcceEEEEEcc
Confidence 111 1 122357777777776655555566666532 2111111 1122344444422
Q ss_pred -CC---------------CEEEEEeCCCCEEEEecCCCC
Q 011916 433 -DG---------------QTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 433 -dg---------------~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.. ..|..-+.||.+..|.+....
T Consensus 346 s~~~v~~p~~g~e~~~plP~l~~L~~~G~L~~~~~~~~~ 384 (388)
T 1xip_A 346 TSGTILEPCSGVDTIERLPLVYILNNEGSLQIVGLFHVA 384 (388)
T ss_dssp CCC--------------CCEEEEEETTSEEEEEEEEC--
T ss_pred cCceecCCCCCcccCCCCCEEEEEcCCceEEEEEEEchh
Confidence 11 247778899999999987654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-12 Score=124.63 Aligned_cols=256 Identities=10% Similarity=0.021 Sum_probs=178.5
Q ss_pred EecCCC-C-EEEEE----------cCCeEEEEECCCCcEEEEeeCCC------CCcEEEEEEcCCCCEEEEEeC--CCeE
Q 011916 174 VDWSSQ-N-VLAVG----------LGTCVYLWTASNSKVTRLCDLGP------GDSVCSVQWTREGSYISVGTN--LGQV 233 (475)
Q Consensus 174 l~ws~~-~-~la~~----------~~~~V~lw~~~~~~~~~~~~~~~------~~~V~~v~~spdg~~la~g~~--dg~v 233 (475)
+.++|+ + ++++. .++.|.+||..+.+....+.++. ......+.|+|||++|+++.. ++.|
T Consensus 83 va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~V 162 (386)
T 3sjl_D 83 PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAV 162 (386)
T ss_dssp EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEE
T ss_pred EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeE
Confidence 667776 3 44443 25789999999999988876543 124567999999999998874 6899
Q ss_pred EEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc----CCEE-EEEEc-CCCCEE
Q 011916 234 QVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK----SEVC-GLKWS-HDDREL 307 (475)
Q Consensus 234 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~~V~-~l~~s-~~~~~l 307 (475)
.++|+.+++.+.++.... .........+.+++.+.||.+.+.++...++.......+. ..+. ...|. ++|+++
T Consensus 163 sVID~~t~~vv~tI~v~g-~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~ 241 (386)
T 3sjl_D 163 GVVDLEGKAFKRMLDVPD-CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV 241 (386)
T ss_dssp EEEETTTTEEEEEEECCS-EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred EEEECCCCcEEEEEECCC-cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence 999999999999886322 1111122457788889999999999975444433221111 1221 23554 577544
Q ss_pred EEEeCCCcEEEEECCCCce--eEEEe----------ccccceeEEEECCCCCcEEEEec----CC---CCCeEEEEECCC
Q 011916 308 ASGGNDNQLLVWNQHSQQP--TLRLT----------EHTAAVKAIAWSPHQSSLLASGG----GT---ADRCIRFWNTSN 368 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~~--~~~~~----------~h~~~v~~l~~sp~~~~ll~sg~----Gs---~d~~I~iwd~~~ 368 (475)
+ .+.+|.|++.|+.+... +..+. ........++++++++.++++.. |+ ..+.|.++|+.+
T Consensus 242 ~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t 320 (386)
T 3sjl_D 242 W-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 320 (386)
T ss_dssp E-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred E-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence 4 56689999999976542 22221 01234456888999998888642 00 136799999999
Q ss_pred CceeeeecCCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 369 GHQLNSVDTGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
++.+..+..+..+..++++++++ .|+++ ...++.|.++|..+++.+.++..- +.-+.|.+++|
T Consensus 321 ~kv~~~i~vg~~~~~lavs~D~~~~ly~t-n~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 321 GERLAKFEMGHEIDSINVSQDEKPLLYAL-STGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp CCEEEEEEEEEEECEEEECSSSSCEEEEE-ETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred CeEEEEEECCCCcceEEECCCCCeEEEEE-cCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 99999998888899999999997 56664 456899999999999999988742 22344566665
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-11 Score=123.93 Aligned_cols=234 Identities=9% Similarity=-0.000 Sum_probs=165.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCC--cEEEEECCCCCccE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDR--NILQHDLRVSSDYI 285 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg--~I~iwd~~~~~~~~ 285 (475)
.....|+|+++|+++++...++.|++||..+++........... . ++| +++.|+++..++ .|.+++...... .
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~-~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG-K-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC-B-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC-c-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence 46889999999997777777899999999988776655543322 2 666 467888888766 788888763332 2
Q ss_pred EEe----cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE----Eeccccce-e-EEEECCCCCcEEEEecC
Q 011916 286 CKL----AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLR----LTEHTAAV-K-AIAWSPHQSSLLASGGG 355 (475)
Q Consensus 286 ~~~----~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~----~~~h~~~v-~-~l~~sp~~~~ll~sg~G 355 (475)
..+ ......+.+++++|++..|+++..++.|+.||..++..... ..++...- . .++|+|++..|+++..
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~- 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ- 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET-
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC-
Confidence 333 22456678999999555666677788999999987753322 11222222 3 9999997666888765
Q ss_pred CCCCeEEEEECCCCceeeeecCC---------------CCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEec
Q 011916 356 TADRCIRFWNTSNGHQLNSVDTG---------------SQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVSTLT 419 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~~~~---------------~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~~l~ 419 (475)
..+.|+.|+.... ........ .....++++++|+.+++ .. .++.|+.|++.++.. ..+.
T Consensus 287 -~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva--d~~~~~~I~~~~~~~G~v-~~~~ 361 (409)
T 3hrp_A 287 -NLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV--DGFKGYCLRKLDILDGYV-STVA 361 (409)
T ss_dssp -TTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE--ETTTTCEEEEEETTTTEE-EEEE
T ss_pred -CCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE--eCCCCCEEEEEECCCCEE-EEEe
Confidence 7889999997643 22222221 34788999999996555 66 788999999877763 4443
Q ss_pred CC---------------CcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 420 GH---------------SLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 420 ~h---------------~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
++ -.....|+++++|.++++-..++.|+.+.++
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 33 2458999999999888888888888887763
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.7e-13 Score=142.79 Aligned_cols=251 Identities=9% Similarity=0.002 Sum_probs=164.7
Q ss_pred CceeccCCCCC--CCCceeEEecCCC-CEEEEEc------CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 156 PHKVLDAPSLQ--DDFYLNLVDWSSQ-NVLAVGL------GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 156 p~~~l~~p~~~--~d~~v~~l~ws~~-~~la~~~------~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
+..+++...+. ..+.+..++|||+ +.+|.+. +..|++||+.+++......+.. .....++|+|||+.|+.
T Consensus 106 ~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~-~~~~~~~wspDg~~l~~ 184 (695)
T 2bkl_A 106 EKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG-GKYATPKWTPDSKGFYY 184 (695)
T ss_dssp CEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC-CTTCCCEECTTSSEEEE
T ss_pred cEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc-ccccceEEecCCCEEEE
Confidence 45555544332 2356888999998 5565432 2579999999998641111111 11268999999999999
Q ss_pred EeCCCe-------------EEEEECCCCe----eeEEecCCCCceEEEEe--CCCEEEEEeCCC----cEEEEECCCCCc
Q 011916 227 GTNLGQ-------------VQVWDGTQCK----RVRTFGGHQTRAGVLAW--NSRILSSGSRDR----NILQHDLRVSSD 283 (475)
Q Consensus 227 g~~dg~-------------v~iwd~~~~~----~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg----~I~iwd~~~~~~ 283 (475)
++.+.. |++|++.++. ++.....|...+..+.| +|++|+.++.++ .|.+++.. ..
T Consensus 185 ~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~--~~ 262 (695)
T 2bkl_A 185 EWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG--EK 262 (695)
T ss_dssp EECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT--CS
T ss_pred EEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC--CC
Confidence 998776 9999998875 33333345667888888 467777776655 56666553 22
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCce--eEEEecc--ccceeEEEECCCCCcEEEEecCC
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGG---NDNQLLVWNQHSQQP--TLRLTEH--TAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~---~Dg~I~iwd~~~~~~--~~~~~~h--~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
....+..+...+....| ++|.+++.+. .++.|.+||+.++.. ...+..+ ...+..++|+ + ..++++..
T Consensus 263 ~~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~-~~lv~~~~-- 337 (695)
T 2bkl_A 263 DFRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G-GHLSLEYL-- 337 (695)
T ss_dssp SCEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T-TEEEEEEE--
T ss_pred ceEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C-CEEEEEEE--
Confidence 34455555556666667 5666444443 257899999987653 2333333 4567888888 3 44777654
Q ss_pred CCCeEEEEECC-CCceeeeecC--CCCeeEEEEcCCCCeEEEEEe--cCCCeEEEEECCCCce
Q 011916 357 ADRCIRFWNTS-NGHQLNSVDT--GSQVCNLAWSKNVNELVSTHG--YSQNQIMVWKYPSMAK 414 (475)
Q Consensus 357 ~d~~I~iwd~~-~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~~g--~~dg~I~iwd~~~~~~ 414 (475)
.|+..++|.+. ++..+..+.. ...+..+.++++++.++.+.. ...+.|++||+.+++.
T Consensus 338 ~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 338 KDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 78887777554 4555555543 456778889999988875422 2347899999988763
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-10 Score=107.17 Aligned_cols=235 Identities=9% Similarity=0.001 Sum_probs=168.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE-EecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR-TFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~-~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
....+.++++.++|+++++...++.|.+||.. ++... .+..+...+..++++ +.++++...++.|..+|.. ....
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 35678999999999977777678999999988 55443 223344678888885 5666666667889999987 3322
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeE-EEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
..........+.++++.++|+++++...++.|..||.. ++... .+......+.++++.+++. ++++.. .++.|..
T Consensus 96 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~--~~~~i~~ 171 (300)
T 2qc5_A 96 EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTEN--QNNSIGR 171 (300)
T ss_dssp EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEET--TTTEEEE
T ss_pred EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEec--CCCeEEE
Confidence 22233344679999999999888877778899999987 54432 2222446789999999998 555543 5788999
Q ss_pred EECCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE-EecCCCcceEEEEECCCCCEEEEE
Q 011916 364 WNTSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS-TLTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 364 wd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
||. +++..... .....+..+++.++++.+++ ....+.|.+|+. +++... .+..+...+.+++++++|.++++.
T Consensus 172 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~--~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 247 (300)
T 2qc5_A 172 ITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFV--EIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTE 247 (300)
T ss_dssp ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEE--ETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEE
T ss_pred ECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEE--ccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEec
Confidence 998 56554322 22356889999999876665 555778999998 444333 233455678999999999977777
Q ss_pred eCCCCEEEEecC
Q 011916 441 AGDETLRFWNVF 452 (475)
Q Consensus 441 s~Dg~I~iW~~~ 452 (475)
..++.|..|+..
T Consensus 248 ~~~~~i~~~~~~ 259 (300)
T 2qc5_A 248 WGANQIGRITND 259 (300)
T ss_dssp TTTTEEEEECTT
T ss_pred cCCCeEEEECCC
Confidence 667889999873
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.49 E-value=8.6e-11 Score=112.15 Aligned_cols=225 Identities=8% Similarity=0.059 Sum_probs=154.3
Q ss_pred CCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccE
Q 011916 209 GDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 209 ~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
..-..+..|+++ +.++++...++.|..||..+++.. .+. ....+.+++++ ++++ .+. ++.|.+||... +...
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~-v~~-~~~l~~~d~~~-g~~~ 86 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYV-ATI-GTKFCALNWKE-QSAV 86 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEE-EEE-TTEEEEEETTT-TEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEE-EEE-CCeEEEEECCC-CcEE
Confidence 345668999995 456666677899999999877653 332 34678899984 5644 444 56899999873 3322
Q ss_pred EEecC----ccCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEE
Q 011916 286 CKLAG----HKSEVCGLKWSHDDRELASGGND---------NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 286 ~~~~~----h~~~V~~l~~s~~~~~lasg~~D---------g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
..... ....+..++++++|+++++...+ ..-.||.+.....+..+..+......++|+|+++.++++
T Consensus 87 ~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 87 VLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEE
T ss_pred EEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEe
Confidence 22111 12347899999999976654321 223444444222233333444567899999999988887
Q ss_pred ecCCCCCeEEEEEC--CCCcee-----eeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc
Q 011916 353 GGGTADRCIRFWNT--SNGHQL-----NSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR 424 (475)
Q Consensus 353 g~Gs~d~~I~iwd~--~~~~~~-----~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~ 424 (475)
.. .++.|.+|++ .++... ..+. .......+++.++|+..++ ....+.|.+||..+++.+..+..+...
T Consensus 167 ~~--~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva--~~~~~~v~~~d~~tG~~~~~i~~p~~~ 242 (297)
T 3g4e_A 167 DS--LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVA--CYNGGRVIRLDPVTGKRLQTVKLPVDK 242 (297)
T ss_dssp EG--GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEE--EETTTEEEEECTTTCCEEEEEECSSSB
T ss_pred cC--CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEE--EcCCCEEEEEcCCCceEEEEEECCCCC
Confidence 65 6899999987 466532 1111 2356788999999987766 556788999999999999998888788
Q ss_pred eEEEEEC-CCCCEEEEEeC
Q 011916 425 VLYLATS-PDGQTIVTGAG 442 (475)
Q Consensus 425 V~~l~~s-pdg~~l~s~s~ 442 (475)
+++++|. ||++.|+.++.
T Consensus 243 ~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 243 TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEEESGGGCEEEEEEB
T ss_pred ceEEEEeCCCCCEEEEEcC
Confidence 9999998 88877665543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-11 Score=114.09 Aligned_cols=232 Identities=10% Similarity=0.094 Sum_probs=157.7
Q ss_pred eeEEecCCC-CEEEE--------EcCCeEEEEECCCCcEEEEee---CCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEE
Q 011916 171 LNLVDWSSQ-NVLAV--------GLGTCVYLWTASNSKVTRLCD---LGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWD 237 (475)
Q Consensus 171 v~~l~ws~~-~~la~--------~~~~~V~lw~~~~~~~~~~~~---~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd 237 (475)
...++|+++ .++++ ..++.|++|+..+++...... .++...+.+++++++ |+++ +++..+.|.+||
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~-v~~~~~~l~~~d 98 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEEEEEE
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEE-EEECCCCEEEEe
Confidence 467888876 56655 557899999998888765432 013467899999999 6544 444445799999
Q ss_pred CCCCeeeEE-ecC----CCCceEEEEeC--CCEEEEEeCC---------------CcEEEEECCCCCccEEEecCccCCE
Q 011916 238 GTQCKRVRT-FGG----HQTRAGVLAWN--SRILSSGSRD---------------RNILQHDLRVSSDYICKLAGHKSEV 295 (475)
Q Consensus 238 ~~~~~~~~~-~~~----h~~~v~~l~~~--~~~l~sgs~d---------------g~I~iwd~~~~~~~~~~~~~h~~~V 295 (475)
.. ++.... ... ....+.+++++ ++++++...+ +.|..+|.. +.. ..+..+....
T Consensus 99 ~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--g~~-~~~~~~~~~~ 174 (314)
T 1pjx_A 99 TD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD--GQM-IQVDTAFQFP 174 (314)
T ss_dssp TT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT--SCE-EEEEEEESSE
T ss_pred CC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC--CCE-EEeccCCCCc
Confidence 88 665433 221 12357788885 5666665544 456666654 332 2333344567
Q ss_pred EEEEEc----CCCCEEEEE-eCCCcEEEEECC-CCce-----eEEEeccc-cceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 296 CGLKWS----HDDRELASG-GNDNQLLVWNQH-SQQP-----TLRLTEHT-AAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 296 ~~l~~s----~~~~~lasg-~~Dg~I~iwd~~-~~~~-----~~~~~~h~-~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
..++|+ ++++.|+.+ ..++.|.+||.. .++. ...+..+. ..+..++++++|..+++.. .++.|.+
T Consensus 175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~---~~~~i~~ 251 (314)
T 1pjx_A 175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW---GSSHIEV 251 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE---TTTEEEE
T ss_pred ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc---CCCEEEE
Confidence 899999 999766555 567899999986 4432 22233333 5678999999997444433 4789999
Q ss_pred EECCCCceeeeecCC-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 364 WNTSNGHQLNSVDTG-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 364 wd~~~~~~~~~~~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
||..+++.+..+... ..+.+++|+++++.|+++ ...++.|..|+...
T Consensus 252 ~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~-~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 252 FGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVT-EHENNAVWKFEWQR 299 (314)
T ss_dssp ECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEE-ETTTTEEEEEECSS
T ss_pred EcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEE-eCCCCeEEEEeCCC
Confidence 999878777666544 679999999999966663 44567899999764
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.5e-12 Score=136.16 Aligned_cols=250 Identities=10% Similarity=0.016 Sum_probs=164.7
Q ss_pred CceeccCCCCCCC--CceeEEecCCC-CEEEEEcC------CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 156 PHKVLDAPSLQDD--FYLNLVDWSSQ-NVLAVGLG------TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 156 p~~~l~~p~~~~d--~~v~~l~ws~~-~~la~~~~------~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
+..+++...+..+ +.+..++|||+ +.++.+.+ ..|++||+.+++...... +...+..++|+|| +.|+.
T Consensus 148 ~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~ 224 (741)
T 1yr2_A 148 GRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLY 224 (741)
T ss_dssp CEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEE
T ss_pred CEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEE
Confidence 4455554433332 47888999998 55555432 369999999998765421 1122357899999 99999
Q ss_pred EeCCCe--------------EEEEECCCCee--eEEec--CCCCceEEEEe--CCCEEEEEeCCC-----cEEEEECCCC
Q 011916 227 GTNLGQ--------------VQVWDGTQCKR--VRTFG--GHQTRAGVLAW--NSRILSSGSRDR-----NILQHDLRVS 281 (475)
Q Consensus 227 g~~dg~--------------v~iwd~~~~~~--~~~~~--~h~~~v~~l~~--~~~~l~sgs~dg-----~I~iwd~~~~ 281 (475)
+..++. |++|++.++.. ...+. .+...+..+.| +|++|+..+.++ .|.+||+...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 225 SRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp EECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred EEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 887654 89999877652 22333 34445788888 467777776543 8999999743
Q ss_pred Ccc-EEEecCccCCEEEEEEcCCCCEEEEEeCC----CcEEEEECCCC--ceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 282 SDY-ICKLAGHKSEVCGLKWSHDDRELASGGND----NQLLVWNQHSQ--QPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 282 ~~~-~~~~~~h~~~V~~l~~s~~~~~lasg~~D----g~I~iwd~~~~--~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
... ...+..+...+.... +++|+.|+..+++ +.|.+||+.++ .....+..+...+..++|. +..++++..
T Consensus 305 ~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~ 381 (741)
T 1yr2_A 305 KIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYI 381 (741)
T ss_dssp EECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEE
T ss_pred CCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEE
Confidence 222 445555555555543 4889988888764 45999999874 3333444455566778887 445777654
Q ss_pred CCCCCeEEEEECC-CCceeeeec--CCCCeeEEEEcCCCCeEEEEE--ecCCCeEEEEECCCCc
Q 011916 355 GTADRCIRFWNTS-NGHQLNSVD--TGSQVCNLAWSKNVNELVSTH--GYSQNQIMVWKYPSMA 413 (475)
Q Consensus 355 Gs~d~~I~iwd~~-~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~--g~~dg~I~iwd~~~~~ 413 (475)
.|+..++|.+. ++.....+. ....+..+.++++++.++.+. ....+.|++||+.+++
T Consensus 382 --~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 382 --HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp --ETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred --ECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 67776666543 455666554 346688899999998877542 2345789999998876
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-11 Score=119.73 Aligned_cols=261 Identities=11% Similarity=0.062 Sum_probs=183.6
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEecCC-------
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT----------NLGQVQVWDGTQCKRVRTFGGH------- 250 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~----------~dg~v~iwd~~~~~~~~~~~~h------- 250 (475)
+.|.++|..+.+++..+..+. .+ .++++|||++|+++. .++.|.++|..+.+.+..+.-.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEECCCCEEEEEEECCC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 699999999999999887654 33 899999999998886 3678999999999998877521
Q ss_pred CCceEEEEe--CCCEEEEEeC--CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc
Q 011916 251 QTRAGVLAW--NSRILSSGSR--DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 251 ~~~v~~l~~--~~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~~~ 325 (475)
......+.+ ++++|+++.. ++.|.+.|+. ..+.+..+..-. . ....|++ ..+++.+.||.+.+.++.+++
T Consensus 176 g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~-t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 176 GTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLE-GKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGE 250 (426)
T ss_dssp SCCGGGSEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTC
T ss_pred CCCcceEEEcCCCCEEEEEecCCCCeEEEEECC-CCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCc
Confidence 112234445 6788888764 5789999998 455555554311 1 2233433 566667778888888886555
Q ss_pred eeEEE----eccccc-eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee--eeecC-----------CCCeeEEEEc
Q 011916 326 PTLRL----TEHTAA-VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL--NSVDT-----------GSQVCNLAWS 387 (475)
Q Consensus 326 ~~~~~----~~h~~~-v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~--~~~~~-----------~~~v~~l~~s 387 (475)
..... .....+ ...+.+.+++..++++. ..+.+.+.|+...... ..+.. ......++++
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s---~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s 327 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFSLRSGRLVWPT---YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYH 327 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEECTTTCEEEEEB---TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred EEEEeeeeeccCCCceeeEeeecCCCCEEEEEe---CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEc
Confidence 44221 111111 13457899998887765 5789999998665422 11110 1122347899
Q ss_pred CCCCeEEEEEec--------CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEEe-CCCCEEEEecCCCCCC
Q 011916 388 KNVNELVSTHGY--------SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTGA-GDETLRFWNVFPSLKA 457 (475)
Q Consensus 388 ~~~~~l~~~~g~--------~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iW~~~~~~~~ 457 (475)
++++.++++... ..+.|.++|..+.+.+.++... ....+++|+|||+ +++++. .++.|.++|+.+.+..
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg-~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv 406 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG-HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEEL 406 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC-CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEE
Confidence 999998886431 1357999999999999988632 2588999999999 888887 5899999999998877
Q ss_pred CCc
Q 011916 458 PAL 460 (475)
Q Consensus 458 ~~~ 460 (475)
..+
T Consensus 407 ~tI 409 (426)
T 3c75_H 407 RSV 409 (426)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-11 Score=132.39 Aligned_cols=241 Identities=14% Similarity=0.162 Sum_probs=162.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEECCCCeeeEE-ecCCCCceEEEEe-CCCEEEEEeCCC---------
Q 011916 208 PGDSVCSVQWTREGSYISVGTN-----LGQVQVWDGTQCKRVRT-FGGHQTRAGVLAW-NSRILSSGSRDR--------- 271 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~-----dg~v~iwd~~~~~~~~~-~~~h~~~v~~l~~-~~~~l~sgs~dg--------- 271 (475)
+...+..++|||||++||.+.. ...|++||+++++.+.. +... ....++| +++.|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~WsDg~~l~y~~~~~~~~~~~~~~ 204 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWLGNEGFFYSSYDKPDGSELSAR 204 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEETTTEEEEEESSCCC-------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEeCCCEEEEEEecCccccccccc
Confidence 3456788999999999986543 25799999999986543 2211 1234455 788888887774
Q ss_pred ----cEEEEECCCCCcc-EEEe--cC-ccCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCc-eeEEEecccccee
Q 011916 272 ----NILQHDLRVSSDY-ICKL--AG-HKSEVCGLKWSHDDRELASGGN----DNQLLVWNQHSQQ-PTLRLTEHTAAVK 338 (475)
Q Consensus 272 ----~I~iwd~~~~~~~-~~~~--~~-h~~~V~~l~~s~~~~~lasg~~----Dg~I~iwd~~~~~-~~~~~~~h~~~v~ 338 (475)
.|++|++.+.... ...+ .. |...+.++.|+|||++|+.... ++.|+++|+.++. ....+..+.....
T Consensus 205 ~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~ 284 (693)
T 3iuj_A 205 TDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADV 284 (693)
T ss_dssp CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCE
T ss_pred CCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceE
Confidence 3999998754432 2222 23 4456789999999998865432 3589999998764 4456666666555
Q ss_pred EEEECCCCCcEEEEecC-CCCCeEEEEECCCCce---eeeecCCCCeeEEEEcCCCCeEEEEEecCCC--eEEEEECCCC
Q 011916 339 AIAWSPHQSSLLASGGG-TADRCIRFWNTSNGHQ---LNSVDTGSQVCNLAWSKNVNELVSTHGYSQN--QIMVWKYPSM 412 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~G-s~d~~I~iwd~~~~~~---~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg--~I~iwd~~~~ 412 (475)
.. |++++..|++.... ...+.|..+|+.++.. ...+.+...+. .|+++++.|+.. ...++ .|++|++..+
T Consensus 285 ~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~-~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 285 SL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAE-YMVDATARVEQFDYEGK 360 (693)
T ss_dssp EE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEE-EEETTEEEEEEECTTSC
T ss_pred EE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEE-EEECCeeEEEEEECCCC
Confidence 55 67777777776531 1247899999988765 23334444444 899999998874 33444 6899998754
Q ss_pred ceEEEec-CCCcceEEEEECCCCCEEEEEeCC----CCEEEEecCCCC
Q 011916 413 AKVSTLT-GHSLRVLYLATSPDGQTIVTGAGD----ETLRFWNVFPSL 455 (475)
Q Consensus 413 ~~~~~l~-~h~~~V~~l~~spdg~~l~s~s~D----g~I~iW~~~~~~ 455 (475)
....+. .+.+.+..+.+++++..|+....+ ++|+.||+.++.
T Consensus 361 -~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 361 -RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp -EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred -eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 444444 345667788888888776655444 789999987664
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.1e-10 Score=109.02 Aligned_cols=219 Identities=7% Similarity=-0.030 Sum_probs=149.3
Q ss_pred cEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEE
Q 011916 211 SVCSVQWTREG-SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICK 287 (475)
Q Consensus 211 ~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~ 287 (475)
...+..|+|++ .+++++..++.|.+||..+++... +. ....+.+++|+ +++++ ++.+ .|.+||... +.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v-~~~~-gl~~~d~~~-g~~~~~ 124 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLI-ASDD-GLFLRDTAT-GVLTLH 124 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEE-EETT-EEEEEETTT-CCEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEE-EECC-CEEEEECCC-CcEEEE
Confidence 34678899974 556666678999999998876532 32 34578888884 45555 4444 499999863 332222
Q ss_pred ecC----ccCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 288 LAG----HKSEVCGLKWSHDDRELASGGN------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 288 ~~~----h~~~V~~l~~s~~~~~lasg~~------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
... ....+.+++++++|+++++... .+.|+.++ +++. ..+..+......++|+|+++.++++.. .
T Consensus 125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~--~ 199 (326)
T 2ghs_A 125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDT--K 199 (326)
T ss_dssp ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEET--T
T ss_pred eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEEC--C
Confidence 111 1235889999999997765542 24566666 4443 333334445789999999998877754 6
Q ss_pred CCeEEEEECC--CC-ce-----eeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEE
Q 011916 358 DRCIRFWNTS--NG-HQ-----LNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428 (475)
Q Consensus 358 d~~I~iwd~~--~~-~~-----~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l 428 (475)
++.|.+||+. ++ .. +..+. .......+++.++|+.+++ ...++.|.+|+. +++.+..+..+...+.++
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva--~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEE--EeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 7899999986 56 32 22222 2345778999999987776 445688999998 677777777777789999
Q ss_pred EEC-CCCCEEEEEeC
Q 011916 429 ATS-PDGQTIVTGAG 442 (475)
Q Consensus 429 ~~s-pdg~~l~s~s~ 442 (475)
+|+ +++..|+.++.
T Consensus 277 af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 277 AFIGPDASRLLVTSA 291 (326)
T ss_dssp EEESTTSCEEEEEEB
T ss_pred EEecCCCCEEEEEec
Confidence 998 88877655543
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-12 Score=125.63 Aligned_cols=171 Identities=12% Similarity=0.030 Sum_probs=133.8
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-----------eeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEEC
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-----------RVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDL 278 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-----------~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~ 278 (475)
..+..+++++...++++|+.++ +.+|+++... ..... .+.. |..++|++.+|+++ .++.|++||+
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCFHGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence 3688999999999999999974 6669865332 11222 3556 99999988999998 8899999999
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
+.-. .......|...+.++.+.+.. +|+++.||.|.+||+.++.... +...|.+++|+|+| +++ |. .|
T Consensus 114 ~sl~-~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~v-g~--~d 181 (388)
T 1xip_A 114 EELS-EFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAV-LL--KD 181 (388)
T ss_dssp SSTT-CEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEE-EE--TT
T ss_pred hhhh-ccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEE-EE--cC
Confidence 8443 455566778889998887653 8889999999999999877543 45689999999999 333 33 79
Q ss_pred CeEEEEECCCCce--eeee------c----CCCCeeEEEEcCCCCeEEEE
Q 011916 359 RCIRFWNTSNGHQ--LNSV------D----TGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 359 ~~I~iwd~~~~~~--~~~~------~----~~~~v~~l~~s~~~~~l~~~ 396 (475)
|.+++|+...+++ ...+ . +...|.++.|.+++.++++.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999999887775 5555 2 46779999999999988874
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-11 Score=119.36 Aligned_cols=242 Identities=10% Similarity=0.063 Sum_probs=172.9
Q ss_pred EEecCCC-C-EEEEE----------cCCeEEEEECCCCcEEEEeeCC-C-----CCcEEEEEEcCCCCEEEEEeC--CCe
Q 011916 173 LVDWSSQ-N-VLAVG----------LGTCVYLWTASNSKVTRLCDLG-P-----GDSVCSVQWTREGSYISVGTN--LGQ 232 (475)
Q Consensus 173 ~l~ws~~-~-~la~~----------~~~~V~lw~~~~~~~~~~~~~~-~-----~~~V~~v~~spdg~~la~g~~--dg~ 232 (475)
.+.++++ + ++++. .++.|.++|..+.+....+.++ . ......+.|+|||++|+++.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 4677776 3 44443 3578999999999998887654 1 233457899999999999874 578
Q ss_pred EEEEECCCCeeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEe----cCccCCE-EEEEEcCCCCE
Q 011916 233 VQVWDGTQCKRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKL----AGHKSEV-CGLKWSHDDRE 306 (475)
Q Consensus 233 v~iwd~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~----~~h~~~V-~~l~~s~~~~~ 306 (475)
|.+.|+.+++.+.++..... ..+.. ....+++.+.||.+.+.+.. .++..... ......+ ..+.+.+++..
T Consensus 202 VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~ 278 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNCRDGSLARVDFA-DGETKVTNTEVFHTEDELLINHPAFSLRSGR 278 (426)
T ss_dssp EEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEETTSSEEEEECC-TTCCEEEECCCCSCTTSCBCSCCEECTTTCE
T ss_pred EEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEcCCCCEEEEECC-CCcEEEEeeeeeccCCCceeeEeeecCCCCE
Confidence 99999999999988864221 22222 34677788889999998884 44443221 1111111 23567889888
Q ss_pred EEEEeCCCcEEEEECCCCceeE--EEec----------cccceeEEEECCCCCcEEEEecC----C---CCCeEEEEECC
Q 011916 307 LASGGNDNQLLVWNQHSQQPTL--RLTE----------HTAAVKAIAWSPHQSSLLASGGG----T---ADRCIRFWNTS 367 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~--~~~~----------h~~~v~~l~~sp~~~~ll~sg~G----s---~d~~I~iwd~~ 367 (475)
++.....+.|.+.|........ .+.. .......++++|+++.++++... + .++.|.++|+.
T Consensus 279 ~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~ 358 (426)
T 3c75_H 279 LVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAE 358 (426)
T ss_dssp EEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred EEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECC
Confidence 8888888999999987554211 1110 11222347899999988886420 0 14689999999
Q ss_pred CCceeeeecCCCCeeEEEEcCCCC-eEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 368 NGHQLNSVDTGSQVCNLAWSKNVN-ELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 368 ~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
+.+.+..+..+.....+.|+|+++ .++++ ...++.|.++|..+++.+.++
T Consensus 359 T~kvv~~I~vg~~P~gia~spDg~~~lyv~-n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 359 TGERINKIELGHEIDSINVSQDAEPLLYAL-SAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp TCCEEEEEEEEEEECEEEECCSSSCEEEEE-ETTTTEEEEEETTTCCEEEEE
T ss_pred CCeEEEEEECCCCcCeEEEccCCCEEEEEE-cCCCCeEEEEECCCCCEEEEe
Confidence 999999998877899999999999 77764 446899999999999999887
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-10 Score=111.10 Aligned_cols=224 Identities=11% Similarity=0.040 Sum_probs=154.8
Q ss_pred CCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccE
Q 011916 209 GDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYI 285 (475)
Q Consensus 209 ~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~ 285 (475)
........|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++ ++++++...++.|.+|+.. +..
T Consensus 44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~- 118 (305)
T 3dr2_A 44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQA- 118 (305)
T ss_dssp CSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCE-
T ss_pred CcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC--CCE-
Confidence 45677899999998 6677777899999997 444 34555566778889985 5655555566889999975 222
Q ss_pred EEecCc-----cCCEEEEEEcCCCCEEEE----EeC-------------CCcEEEEECCCCceeEEEeccccceeEEEEC
Q 011916 286 CKLAGH-----KSEVCGLKWSHDDRELAS----GGN-------------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 286 ~~~~~h-----~~~V~~l~~s~~~~~las----g~~-------------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~s 343 (475)
..+..+ ...+..++++++|+++++ |.. .+.|+.||..+++..... .......++|+
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~s 196 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFS 196 (305)
T ss_dssp EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEEC
T ss_pred EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEc
Confidence 222111 134667999999998886 332 256888888766654333 44566889999
Q ss_pred CCCCcEEEEecCCC-----CCeEEEEECCCCcee--eee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce
Q 011916 344 PHQSSLLASGGGTA-----DRCIRFWNTSNGHQL--NSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK 414 (475)
Q Consensus 344 p~~~~ll~sg~Gs~-----d~~I~iwd~~~~~~~--~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~ 414 (475)
|+++.|+++.. . .+.|.+|++..+... ..+ ........+++.++|+..++ . .+.|.+|+. .++.
T Consensus 197 pdg~~lyv~~~--~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~---~-~~gv~~~~~-~g~~ 269 (305)
T 3dr2_A 197 PDEQTLYVSQT--PEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS---S-GTGVCVFDS-DGQL 269 (305)
T ss_dssp TTSSEEEEEEC--CC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC---C-SSEEEEECT-TSCE
T ss_pred CCCCEEEEEec--CCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe---c-CCcEEEECC-CCCE
Confidence 99998877653 2 378999998765411 111 12344678999999995544 3 345999997 5777
Q ss_pred EEEecCCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 415 VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 415 ~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
+..+..+. .+.+++|+++++.|+.++.++..+
T Consensus 270 ~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~ 301 (305)
T 3dr2_A 270 LGHIPTPG-TASNCTFDQAQQRLFITGGPCLWM 301 (305)
T ss_dssp EEEEECSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred EEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence 77776555 588999999999888888765433
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.39 E-value=6.2e-10 Score=106.12 Aligned_cols=220 Identities=15% Similarity=0.134 Sum_probs=151.6
Q ss_pred ceeEEecCCC--CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 170 YLNLVDWSSQ--NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 170 ~v~~l~ws~~--~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.....|+++ .++.+.. ++.|+.|+..+++... +. ....+.+++++++|++ +++. ++.|.+||.++++....
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~~~~i~~~~dG~l-~v~~-~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VT--MDAPVSSVALRQSGGY-VATI-GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EE--CSSCEEEEEEBTTSSE-EEEE-TTEEEEEETTTTEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-Ee--CCCceEEEEECCCCCE-EEEE-CCeEEEEECCCCcEEEE
Confidence 4567889883 4555554 7899999999887643 32 3567999999999994 4444 46899999988765443
Q ss_pred ecC----CCCceEEEEeC--CCEEEEEeC---------CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE-E
Q 011916 247 FGG----HQTRAGVLAWN--SRILSSGSR---------DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS-G 310 (475)
Q Consensus 247 ~~~----h~~~v~~l~~~--~~~l~sgs~---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las-g 310 (475)
... ....+..++++ ++++++... .....+|.+...+.. ..+..+......++|+|+++.|+. .
T Consensus 89 ~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~~~~~~~~~pngi~~spdg~~lyv~~ 167 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-KKYFDQVDISNGLDWSLDHKIFYYID 167 (297)
T ss_dssp EECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-EEEEEEESBEEEEEECTTSCEEEEEE
T ss_pred EecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCE-EEEeeccccccceEEcCCCCEEEEec
Confidence 322 12357788885 565554422 233456655533332 233334456789999999987654 4
Q ss_pred eCCCcEEEEEC--CCCce-----eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCee
Q 011916 311 GNDNQLLVWNQ--HSQQP-----TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVC 382 (475)
Q Consensus 311 ~~Dg~I~iwd~--~~~~~-----~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~ 382 (475)
+.++.|.+||+ .++.. ...+..+......+++.++|. |.++.. ..+.|..||..+++.+..+... ..+.
T Consensus 168 ~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~--~~~~v~~~d~~tG~~~~~i~~p~~~~t 244 (297)
T 3g4e_A 168 SLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACY--NGGRVIRLDPVTGKRLQTVKLPVDKTT 244 (297)
T ss_dssp GGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEE--TTTEEEEECTTTCCEEEEEECSSSBEE
T ss_pred CCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEc--CCCEEEEEcCCCceEEEEEECCCCCce
Confidence 55789999997 45542 122233446788999999997 555433 4788999999999999888765 6799
Q ss_pred EEEEc-CCCCeEEEEEe
Q 011916 383 NLAWS-KNVNELVSTHG 398 (475)
Q Consensus 383 ~l~~s-~~~~~l~~~~g 398 (475)
+++|. |+++.|++++.
T Consensus 245 ~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 245 SCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEESGGGCEEEEEEB
T ss_pred EEEEeCCCCCEEEEEcC
Confidence 99998 89998888654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-09 Score=107.19 Aligned_cols=267 Identities=11% Similarity=0.043 Sum_probs=174.3
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCC--------CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGP--------GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~--------~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
.+.+++++.++.|+.+|..+++..-...... ...+.+. ...++..+++++.+|.|..+|..+++.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 3566666778899999999999776555422 2223222 222466788899999999999999998877765
Q ss_pred CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCE-----EEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 011916 250 HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEV-----CGLKWSHDDRELASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 250 h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----~~l~~s~~~~~lasg~~Dg~I~iwd~~~~ 324 (475)
...........+..++.++.++.|..+|.. .++.+.......... ..... .+..++.++.++.|..+|..++
T Consensus 132 ~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~-tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG 208 (376)
T 3q7m_A 132 AGEALSRPVVSDGLVLIHTSNGQLQALNEA-DGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQG 208 (376)
T ss_dssp SSCCCSCCEEETTEEEEECTTSEEEEEETT-TCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTC
T ss_pred CCceEcCCEEECCEEEEEcCCCeEEEEECC-CCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCC
Confidence 433333334456788889999999999997 444443333221110 11122 2457888888999999999999
Q ss_pred ceeEEEeccccc----ee---EEEECC--CCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEE
Q 011916 325 QPTLRLTEHTAA----VK---AIAWSP--HQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 325 ~~~~~~~~h~~~----v~---~l~~sp--~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 395 (475)
+.+......... +. .+.-.| .+..+++. + .++.+..+|..+|+.+....... ...+.. ++..+++
T Consensus 209 ~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~-~--~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~--~~~~l~~ 282 (376)
T 3q7m_A 209 QMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFAL-A--YNGNLTALDLRSGQIMWKRELGS-VNDFIV--DGNRIYL 282 (376)
T ss_dssp CEEEEEECCC-----------CCCCCCEEETTEEEEE-C--TTSCEEEEETTTCCEEEEECCCC-EEEEEE--ETTEEEE
T ss_pred cEEEEEecccCCCCcccccccccCCCcEEECCEEEEE-e--cCcEEEEEECCCCcEEeeccCCC-CCCceE--ECCEEEE
Confidence 887766532110 00 011111 13334443 2 68999999999999887776443 334433 3566666
Q ss_pred EEecCCCeEEEEECCCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
+..++.|..+|..+++.+..... ....+..... .+..|+.++.+|.|.++|..+++...
T Consensus 283 --~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~ 342 (376)
T 3q7m_A 283 --VDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVA 342 (376)
T ss_dssp --EETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred --EcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEE
Confidence 56789999999999998877652 2222222333 35678889999999999998877544
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.5e-10 Score=110.72 Aligned_cols=230 Identities=12% Similarity=0.052 Sum_probs=156.0
Q ss_pred ceeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeE
Q 011916 170 YLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG--QVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg--~v~iwd~~~~~~~~ 245 (475)
....++|+++ +++++.. ++.|++||..++.+..+... ..... ++|+++++.|+++..++ .|.+|+...+....
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~ 208 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG--FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPT 208 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET--CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc--CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeE
Confidence 3566888876 4555554 57999999999888777653 22333 99999999999988866 79999977655444
Q ss_pred Ee----cCCCCceEEEEeCC--CEEEEEeCCCcEEEEECCCCCccEEE---ecCccCCE--EEEEEcCC-CCEEEEEeCC
Q 011916 246 TF----GGHQTRAGVLAWNS--RILSSGSRDRNILQHDLRVSSDYICK---LAGHKSEV--CGLKWSHD-DRELASGGND 313 (475)
Q Consensus 246 ~~----~~h~~~v~~l~~~~--~~l~sgs~dg~I~iwd~~~~~~~~~~---~~~h~~~V--~~l~~s~~-~~~lasg~~D 313 (475)
.+ ......+.++++++ ..|+.+..++.|..||.......... ..++...- ..++|+|+ +.++++-..+
T Consensus 209 ~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~ 288 (409)
T 3hrp_A 209 RIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL 288 (409)
T ss_dssp EEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred EeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence 44 22445667788753 56666778889999998743321110 12222222 28999995 5566666677
Q ss_pred CcEEEEECCCCceeEEEeccc---------------cceeEEEECCCCCcEEEEecCC-CCCeEEEEECCCCceeeeecC
Q 011916 314 NQLLVWNQHSQQPTLRLTEHT---------------AAVKAIAWSPHQSSLLASGGGT-ADRCIRFWNTSNGHQLNSVDT 377 (475)
Q Consensus 314 g~I~iwd~~~~~~~~~~~~h~---------------~~v~~l~~sp~~~~ll~sg~Gs-~d~~I~iwd~~~~~~~~~~~~ 377 (475)
+.|+.|+.... +..+.++. .....++++++|. |+++. + .++.|+.|++.++........
T Consensus 289 ~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad--~~~~~~I~~~~~~~G~v~~~~g~ 363 (409)
T 3hrp_A 289 SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVD--GFKGYCLRKLDILDGYVSTVAGQ 363 (409)
T ss_dssp TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEE--TTTTCEEEEEETTTTEEEEEEEC
T ss_pred CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEe--CCCCCEEEEEECCCCEEEEEeCC
Confidence 89999997654 33333322 3478999999998 65553 3 578999999888865444332
Q ss_pred ---------------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 378 ---------------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 378 ---------------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
-.....+++++++..+++ ...++.|+.+++
T Consensus 364 ~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa--d~~n~~Ir~i~~ 408 (409)
T 3hrp_A 364 VDVASQIDGTPLEATFNYPYDICYDGEGGYWIA--EAWGKAIRKYAV 408 (409)
T ss_dssp TTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE--ESTTCEEEEEEE
T ss_pred CCCCCcCCCChhceEeCCceEEEEcCCCCEEEE--ECCCCeEEEEEe
Confidence 135788999999766666 667778887764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-10 Score=123.19 Aligned_cols=277 Identities=9% Similarity=0.037 Sum_probs=186.5
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCC----------cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGD----------SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~----------~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.+++++.++.|+-+|..+|+..=..+..... ....+++ ++..|++++.|+.|..+|..+++.+..+.
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 155 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQN 155 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeeec
Confidence 45566666789999999999876655432110 0112222 46688999999999999999999998887
Q ss_pred CC-C----Cce-EEEEeCCCEEEEEeC------CCcEEEEECCCCCccEEEecCccC-----------------------
Q 011916 249 GH-Q----TRA-GVLAWNSRILSSGSR------DRNILQHDLRVSSDYICKLAGHKS----------------------- 293 (475)
Q Consensus 249 ~h-~----~~v-~~l~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~----------------------- 293 (475)
.+ . ..+ ......+..+++++. ++.|..+|.+ .++.+-.+.....
T Consensus 156 ~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~-tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 156 TFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAE-TGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp TTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETT-TCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred CCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECC-CCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 54 2 111 112223455555543 7899999998 4444443332111
Q ss_pred ---------CEEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEEec--cc-------cc
Q 011916 294 ---------EVCGLKWSHDDRELASGGNDN-------------------QLLVWNQHSQQPTLRLTE--HT-------AA 336 (475)
Q Consensus 294 ---------~V~~l~~s~~~~~lasg~~Dg-------------------~I~iwd~~~~~~~~~~~~--h~-------~~ 336 (475)
....+.+++++..++.+..++ .|..+|.++++.+..+.. |. ..
T Consensus 235 ~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 314 (677)
T 1kb0_A 235 WWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQP 314 (677)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCC
Confidence 113577888888888887654 599999999998887664 21 11
Q ss_pred eeEEEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC------------Ce---------------------
Q 011916 337 VKAIAWSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGS------------QV--------------------- 381 (475)
Q Consensus 337 v~~l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~------------~v--------------------- 381 (475)
..-+....+|+ .+++.+ +.+|.|+++|..+|+.+..+.... .+
T Consensus 315 p~l~~~~~dG~~~~~l~~~--~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 315 MILADIKIAGKPRKVILHA--PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp CEEEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred cEEEecccCCcEeeEEEEE--CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 22223333563 355554 489999999999999987664221 01
Q ss_pred ---eEEEEcCCCCeEEEEEec-----------------------------------------CCCeEEEEECCCCceEEE
Q 011916 382 ---CNLAWSKNVNELVSTHGY-----------------------------------------SQNQIMVWKYPSMAKVST 417 (475)
Q Consensus 382 ---~~l~~s~~~~~l~~~~g~-----------------------------------------~dg~I~iwd~~~~~~~~~ 417 (475)
..++++|++..+++.... ..|.|..||+.+++.+..
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 146889998888774321 127899999999998887
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
+. +...+....+..++..++.++.||.|++||..+++......
T Consensus 473 ~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 473 VE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 76 33344555566788889999999999999999998766543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=9.5e-11 Score=114.96 Aligned_cols=262 Identities=11% Similarity=-0.058 Sum_probs=176.3
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEecCC--------
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT----------NLGQVQVWDGTQCKRVRTFGGH-------- 250 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~----------~dg~v~iwd~~~~~~~~~~~~h-------- 250 (475)
.|.++|..+++++..+..+.. + .+.++|||++++++. .++.|.+||+.+++.+.++..+
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 899999999999999887654 4 799999999999987 3688999999999999988633
Q ss_pred -CCceEEEEeCCCEEEEEeC--CCcEEE--EECCCCCccEEEecCccCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCC-
Q 011916 251 -QTRAGVLAWNSRILSSGSR--DRNILQ--HDLRVSSDYICKLAGHKSEVCGLKWSHDD-RELASGGNDNQLLVWNQHS- 323 (475)
Q Consensus 251 -~~~v~~l~~~~~~l~sgs~--dg~I~i--wd~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~lasg~~Dg~I~iwd~~~- 323 (475)
...-..+..++++++++.. +..+.+ +|... +..+.. .+. +.+.|++ ..+++.+.||.+.+.|+.+
T Consensus 124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~ 195 (368)
T 1mda_H 124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSS
T ss_pred CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccc
Confidence 2223334446788888864 457888 88874 333321 111 1123443 3455566788888888876
Q ss_pred ----CceeEE----EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeeecCC-----------CCee
Q 011916 324 ----QQPTLR----LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH--QLNSVDTG-----------SQVC 382 (475)
Q Consensus 324 ----~~~~~~----~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~--~~~~~~~~-----------~~v~ 382 (475)
++.... +.-...+. + .+++..++.+. . +.+.+.|+.+.. .+..+... ....
T Consensus 196 ~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs---~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 267 (368)
T 1mda_H 196 PAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAV---A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQ 267 (368)
T ss_dssp CCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECB---S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSS
T ss_pred cccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEc---C-CEEEEEECCCCcceEEEEEEeccccccccccccCcce
Confidence 332211 11112222 3 55556555543 5 899999986542 22322211 1122
Q ss_pred EEEEcCCCCeEEEEEe-c-C-----CCeEEEEECCCCceEEEecCCCcceEEEEECCCCC-EEEEEe-CCCCEEEEecCC
Q 011916 383 NLAWSKNVNELVSTHG-Y-S-----QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ-TIVTGA-GDETLRFWNVFP 453 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g-~-~-----dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~l~s~s-~Dg~I~iW~~~~ 453 (475)
.+.++++++.++++.. . . .+.+.++|..+++.+..+.... ...+|+|++||+ .+++.. .+++|.++|+.+
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 2789999999988433 1 1 2356699999999988886443 688999999998 566666 599999999999
Q ss_pred CCCCCCcccCCcccccc
Q 011916 454 SLKAPALVKDTSLWSLG 470 (475)
Q Consensus 454 ~~~~~~~~~~~~v~s~~ 470 (475)
.+....+.-....|.+.
T Consensus 347 ~kvv~~I~vg~~P~~i~ 363 (368)
T 1mda_H 347 DQDQSSVELDKGPESLS 363 (368)
T ss_dssp CEEEEECCCCSCCCEEE
T ss_pred CcEEEEEECCCCCCEEE
Confidence 88877766555566554
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-09 Score=100.91 Aligned_cols=214 Identities=9% Similarity=-0.023 Sum_probs=143.4
Q ss_pred eeEEecCCC--CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe
Q 011916 171 LNLVDWSSQ--NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 171 v~~l~ws~~--~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~ 247 (475)
.....|+++ .++.+.. ++.|++|+..+++.... . ....+.+++|+++|+++++. .+ .|.+||..+++.....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-A--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-E--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-E--CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 456789884 4555554 78999999998876443 2 24679999999999876654 44 4999999887754332
Q ss_pred cC----CCCceEEEEeC--CCEEEEEeC------CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE-eCCC
Q 011916 248 GG----HQTRAGVLAWN--SRILSSGSR------DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG-GNDN 314 (475)
Q Consensus 248 ~~----h~~~v~~l~~~--~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg-~~Dg 314 (475)
.. ....+..++++ ++++++... .+.|..++ .+.. ..+..+.....+++|+++++.|+.+ ..++
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~---~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~ 201 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA---KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVN 201 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE---TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTC
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe---CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCC
Confidence 21 12367888885 565554432 23455555 3332 2233344567899999999877655 4568
Q ss_pred cEEEEECC--CC-ce-----eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeeEEE
Q 011916 315 QLLVWNQH--SQ-QP-----TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVCNLA 385 (475)
Q Consensus 315 ~I~iwd~~--~~-~~-----~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~ 385 (475)
.|.+||+. ++ .. ...+......+..+++.++|..++++. .++.|..||. +++.+..+... ..+.+++
T Consensus 202 ~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~---~~~~v~~~d~-~g~~~~~i~~~~~~~~~~a 277 (326)
T 2ghs_A 202 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW---GEGAVDRYDT-DGNHIARYEVPGKQTTCPA 277 (326)
T ss_dssp EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE---TTTEEEEECT-TCCEEEEEECSCSBEEEEE
T ss_pred EEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEe---CCCEEEEECC-CCCEEEEEECCCCCcEEEE
Confidence 99999986 55 32 222222345678899999998544443 3688999998 67777777544 4699999
Q ss_pred Ec-CCCCeEEEEE
Q 011916 386 WS-KNVNELVSTH 397 (475)
Q Consensus 386 ~s-~~~~~l~~~~ 397 (475)
|. ++++.|++++
T Consensus 278 f~g~d~~~L~vt~ 290 (326)
T 2ghs_A 278 FIGPDASRLLVTS 290 (326)
T ss_dssp EESTTSCEEEEEE
T ss_pred EecCCCCEEEEEe
Confidence 98 8888887753
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.1e-09 Score=104.66 Aligned_cols=260 Identities=12% Similarity=0.017 Sum_probs=169.3
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCc
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTR 253 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~ 253 (475)
+....+.+++++.++.|+.+|..+++..-....... ....... .+..+++++.+|.|..+|..+++.+..+......
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~-~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~ 175 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE-ALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPS 175 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSC-CCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC--
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCc-eEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCc
Confidence 333456778888899999999999997765554211 1111112 2457888999999999999999988877643322
Q ss_pred e-----EEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccC----CEE---EEEEcC--CCCEEEEEeCCCcEEEE
Q 011916 254 A-----GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS----EVC---GLKWSH--DDRELASGGNDNQLLVW 319 (475)
Q Consensus 254 v-----~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~----~V~---~l~~s~--~~~~lasg~~Dg~I~iw 319 (475)
. ......+..++.+..++.|..+|... ++.+-....... ++. .+.-.| .+..++.++.++.|..+
T Consensus 176 ~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~t-G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~ 254 (376)
T 3q7m_A 176 LSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQ-GQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTAL 254 (376)
T ss_dssp ---CCCCCCEEETTEEEECCTTTEEEEEETTT-CCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEE
T ss_pred eeecCCCCcEEECCEEEEEcCCCEEEEEECCC-CcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEE
Confidence 1 22233467788889999999999973 444333321110 000 011111 34678888889999999
Q ss_pred ECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CC-CCeeEEEEcCCCCeEEEEE
Q 011916 320 NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TG-SQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 320 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~-~~v~~l~~s~~~~~l~~~~ 397 (475)
|..+++.+..... .....+... +..+++.. .++.|..+|..+|+.+.... .. ..+..... .+..|++
T Consensus 255 d~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v-- 323 (376)
T 3q7m_A 255 DLRSGQIMWKREL--GSVNDFIVD--GNRIYLVD---QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVV-- 323 (376)
T ss_dssp ETTTCCEEEEECC--CCEEEEEEE--TTEEEEEE---TTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEE--
T ss_pred ECCCCcEEeeccC--CCCCCceEE--CCEEEEEc---CCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEE--
Confidence 9999988776543 233444443 44455543 68999999999999887765 22 22333333 2456777
Q ss_pred ecCCCeEEEEECCCCceEEEecCCCcceEE-EEECCCCCEEEEEeCCCCEEEEe
Q 011916 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLY-LATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 398 g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~-l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
+..+|.|+++|..+++.+.........+.. ... .+..|+.++.||.|+.|+
T Consensus 324 ~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 324 GDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 678899999999999988777653333322 222 245788899999999986
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.6e-10 Score=119.76 Aligned_cols=277 Identities=9% Similarity=0.050 Sum_probs=181.2
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCc---------E-EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDS---------V-CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~---------V-~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.+++++.++.|+.+|..+|+..=..+...... + ..+.. ++..|++++.||.|..+|..+++.+..+.
T Consensus 71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~~ 148 (689)
T 1yiq_A 71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSVD 148 (689)
T ss_dssp TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeeec
Confidence 456666668899999999999766654322110 0 11222 35678999999999999999999988776
Q ss_pred CC--CC---ceE-EEEeCCCEEEEEe------CCCcEEEEECCCCCccEEEecC--c-----------------------
Q 011916 249 GH--QT---RAG-VLAWNSRILSSGS------RDRNILQHDLRVSSDYICKLAG--H----------------------- 291 (475)
Q Consensus 249 ~h--~~---~v~-~l~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~--h----------------------- 291 (475)
.. .. .+. +....+..++.++ .+|.|..||.++ ++.+-.+.. +
T Consensus 149 ~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w 227 (689)
T 1yiq_A 149 TRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAET-GKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY 227 (689)
T ss_dssp CCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred CcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCC-CcEEEEecccCCCcccccccccccccccccCCcee
Confidence 42 11 111 1112234444443 378999999984 444433321 0
Q ss_pred ------cCCEEEEEEcCCCCEEEEEeCCCc-------------------EEEEECCCCceeEEEec--cc-------cce
Q 011916 292 ------KSEVCGLKWSHDDRELASGGNDNQ-------------------LLVWNQHSQQPTLRLTE--HT-------AAV 337 (475)
Q Consensus 292 ------~~~V~~l~~s~~~~~lasg~~Dg~-------------------I~iwd~~~~~~~~~~~~--h~-------~~v 337 (475)
......+.+++++..++.+..++. |..+|.++++.+..+.. |. ..+
T Consensus 228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~ 307 (689)
T 1yiq_A 228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM 307 (689)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence 011125778888889999887763 99999999999887764 21 111
Q ss_pred eEEEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC------------------------------------
Q 011916 338 KAIAWSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGS------------------------------------ 379 (475)
Q Consensus 338 ~~l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~------------------------------------ 379 (475)
.......+|+ .+++.+ +.+|.++++|..+|+.+.......
T Consensus 308 ~l~d~~~~G~~~~~v~~~--~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 308 ILAELPIDGKPRKVLMQA--PKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp EEEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred EEEeeccCCcEEEEEEEE--CCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 1112222443 245554 489999999999999885432111
Q ss_pred ----CeeEEEEcCCCCeEEEEEec-------------------------------------------CCCeEEEEECCCC
Q 011916 380 ----QVCNLAWSKNVNELVSTHGY-------------------------------------------SQNQIMVWKYPSM 412 (475)
Q Consensus 380 ----~v~~l~~s~~~~~l~~~~g~-------------------------------------------~dg~I~iwd~~~~ 412 (475)
.-..++++|+...+++.... .+|.|..||+.++
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 11236888888887763221 0378999999999
Q ss_pred ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 413 AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 413 ~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
+.+..+..+. .+..-.+...+.+++.++.||.|+.||..+++......
T Consensus 466 ~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 466 QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence 9988876543 23333555678899999999999999999998775543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.7e-10 Score=120.04 Aligned_cols=250 Identities=14% Similarity=0.075 Sum_probs=165.3
Q ss_pred CceeccCCCCC--CCCceeEEecCCC-CEEEEEc--C----CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 156 PHKVLDAPSLQ--DDFYLNLVDWSSQ-NVLAVGL--G----TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 156 p~~~l~~p~~~--~d~~v~~l~ws~~-~~la~~~--~----~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
++.+||...+. ..+.+..++|||+ +.+|.+. + ..|++||+.+++...... . ......++|+ ||+.|+.
T Consensus 114 ~~vllD~n~la~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~-~~k~~~~~Ws-Dg~~l~y 190 (693)
T 3iuj_A 114 AEVFLDPNTLSPDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-K-DVKFSGISWL-GNEGFFY 190 (693)
T ss_dssp CEEEECGGGGSTTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-E-EEESCCCEEE-TTTEEEE
T ss_pred cEEEEehhhccCCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-C-CceeccEEEe-CCCEEEE
Confidence 34455543333 3346788899998 5666443 2 369999999998765421 1 1113578899 9999999
Q ss_pred EeCCCe-------------EEEEECCCCee----eEEecC-CCCceEEEEe--CCCEEEEEe----CCCcEEEEECCCCC
Q 011916 227 GTNLGQ-------------VQVWDGTQCKR----VRTFGG-HQTRAGVLAW--NSRILSSGS----RDRNILQHDLRVSS 282 (475)
Q Consensus 227 g~~dg~-------------v~iwd~~~~~~----~~~~~~-h~~~v~~l~~--~~~~l~sgs----~dg~I~iwd~~~~~ 282 (475)
++.+.. |++|++.+... +..... |...+..+.| ++++|+... .+..|.++|+....
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQEN 270 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTT
T ss_pred EEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCC
Confidence 988743 99999887542 323333 4556777888 467665433 23589999997554
Q ss_pred ccEEEecCccCCEEEEEEcCCCCEEEEEeC-C---CcEEEEECCCCce--eEEEeccccceeEEEECCCCCcEEEEecCC
Q 011916 283 DYICKLAGHKSEVCGLKWSHDDRELASGGN-D---NQLLVWNQHSQQP--TLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-D---g~I~iwd~~~~~~--~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
.....+..+....... |+++|..|+..++ + +.|.++|+.++.. ...+..|...+. .|++++..|+++..
T Consensus 271 ~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~-- 345 (693)
T 3iuj_A 271 APLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM-- 345 (693)
T ss_dssp CCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE--
T ss_pred CceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE--
Confidence 3455566666655555 6666666655443 3 5799999987654 345666666655 89999998888764
Q ss_pred CCC--eEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEec--CCCeEEEEECCCCce
Q 011916 357 ADR--CIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGY--SQNQIMVWKYPSMAK 414 (475)
Q Consensus 357 ~d~--~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~--~dg~I~iwd~~~~~~ 414 (475)
.++ .|++||+..+ ....+. ....+..+.++++++.++....+ .-+.|+.||+.+++.
T Consensus 346 ~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 346 VDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp ETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 444 6899998754 444443 33457778888899888874222 237899999987754
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-14 Score=138.38 Aligned_cols=260 Identities=12% Similarity=0.024 Sum_probs=144.2
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCc-e-E
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTR-A-G 255 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~-v-~ 255 (475)
.+.+++++.++.|+.||..+|+..-.... +.+.+..+..++..+++++.||.|+.||.++++.+..+..+... + .
T Consensus 9 ~~~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 34677777899999999999998766653 34555556667888888889999999999999887766543211 1 1
Q ss_pred EEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccc
Q 011916 256 VLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHT 334 (475)
Q Consensus 256 ~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~ 334 (475)
.... .+..+++|+.|+.|..||.+ .++.+..+..+. ...++|++..+++++.|+.|+.||.++++.+..+..+.
T Consensus 86 sp~~~~~~~v~~g~~dg~v~a~D~~-tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~ 160 (369)
T 2hz6_A 86 SPCRSSDGILYMGKKQDIWYVIDLL-TGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD 160 (369)
T ss_dssp CSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE
T ss_pred CceEecCCEEEEEeCCCEEEEEECC-CCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc
Confidence 1112 45677888889999999998 455554444433 23456788899999999999999999998876654322
Q ss_pred cceeEEEECCCC---CcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE-EEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 335 AAVKAIAWSPHQ---SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN-LAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 335 ~~v~~l~~sp~~---~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~-l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
....++.++. ..+++.. .|+.|+.||..+|+.+......+++.. ..+++++...+......++.++.+|..
T Consensus 161 --~~~~~~~~~~~~~~~v~~~~---~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~ 235 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVSN---GDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFM 235 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEEE---TSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHH
T ss_pred --ccCccccCCccccceEEEEC---CCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceEeccceeecccceeeeehh
Confidence 2333444432 3355533 799999999999999988887777654 334445432210000012344555554
Q ss_pred CCc----eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 411 SMA----KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 411 ~~~----~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
+++ .+..+... ..+.... -.+..|+.++.||.|+.++...
T Consensus 236 tG~~~~~~~W~~~~~-~~~~sp~--~~~g~lyv~~~~G~l~al~~~~ 279 (369)
T 2hz6_A 236 SGEVGRITKWKYPFP-KETEAKS--KLTPTLYVGKYSTSLYASPSMV 279 (369)
T ss_dssp HHHHHHHHTSCCCCC-CHHHHHH--HSEEEECBEECSSCEECCEEEE
T ss_pred cCCcccceeeeeccC-ccccccc--cccceEEEecccCCEEecCccc
Confidence 444 22222111 1110000 1244677888899998888764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-09 Score=105.13 Aligned_cols=232 Identities=13% Similarity=-0.019 Sum_probs=151.2
Q ss_pred CcEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCeeeEEe-------cCCCCceEEEEeCC-CEEEEEe-C-----CCcE
Q 011916 210 DSVCSVQWTREGSYISVGTN--LGQVQVWDGTQCKRVRTF-------GGHQTRAGVLAWNS-RILSSGS-R-----DRNI 273 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~--dg~v~iwd~~~~~~~~~~-------~~h~~~v~~l~~~~-~~l~sgs-~-----dg~I 273 (475)
..+..|+++++|+++++... ++.++||.+.+++.. .+ ..|-..+..+++++ ..|.... . ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 67899999999998888642 343555555455433 22 13456889999964 3444443 2 5789
Q ss_pred EEEECCCCCccEEEecC------ccCCEEEEEEcCCCCEE-EEEe---CCCcEEEEECCCCceeEEEeccc---------
Q 011916 274 LQHDLRVSSDYICKLAG------HKSEVCGLKWSHDDREL-ASGG---NDNQLLVWNQHSQQPTLRLTEHT--------- 334 (475)
Q Consensus 274 ~iwd~~~~~~~~~~~~~------h~~~V~~l~~s~~~~~l-asg~---~Dg~I~iwd~~~~~~~~~~~~h~--------- 334 (475)
.+||+. .++.+..+.. +...+..+++++++..+ ++.. .++.|.+||+.+++....+..|.
T Consensus 96 ~~~d~~-tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~ 174 (343)
T 2qe8_A 96 VAWDTL-NNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL 174 (343)
T ss_dssp EEEETT-TTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred EEEECC-CCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence 999997 4444444432 22356889999865454 4444 57899999998776555443221
Q ss_pred --------------------cceeEEEECCCCCcEEEEecCCCCCeEEEEECC---CCc--------eeeeecCCCCeeE
Q 011916 335 --------------------AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS---NGH--------QLNSVDTGSQVCN 383 (475)
Q Consensus 335 --------------------~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~---~~~--------~~~~~~~~~~v~~ 383 (475)
..+..|+|+|+++.|+++.. ....|..++.. .+. .+...........
T Consensus 175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdg 252 (343)
T 2qe8_A 175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM--HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDG 252 (343)
T ss_dssp EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES--SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSC
T ss_pred eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC--CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCce
Confidence 23588999999998887653 44566666532 111 0111222345678
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC-CCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 384 LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG-HSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
++++++|..+++ ...++.|.+||..+++....... +...+.+++|.++|+++++.+..+.+.
T Consensus 253 ia~d~~G~l~va--~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~ 315 (343)
T 2qe8_A 253 ISIDKDHNIYVG--DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSA 315 (343)
T ss_dssp EEECTTCCEEEE--EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSG
T ss_pred EEECCCCCEEEE--ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccc
Confidence 999999987777 67789999999855654333322 245689999999999888887655443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.6e-09 Score=113.67 Aligned_cols=273 Identities=10% Similarity=0.068 Sum_probs=182.2
Q ss_pred CCCCEEEEEcCCeEEEEECCCCcEEEEeeCC-CC---CcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEE
Q 011916 177 SSQNVLAVGLGTCVYLWTASNSKVTRLCDLG-PG---DSVCSVQWTREGSYISVGTN------LGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 177 s~~~~la~~~~~~V~lw~~~~~~~~~~~~~~-~~---~~V~~v~~spdg~~la~g~~------dg~v~iwd~~~~~~~~~ 246 (475)
..+.+++++.++.|+.+|..+|+..-..... .. ..+.+--.. .+..+++++. +|.|+.||..+++.+..
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 3456777777999999999999987766543 10 112111011 2445666654 68999999999999887
Q ss_pred ecCCCCc--------------------------------eEEEEe--CCCEEEEEeCCC-------------------cE
Q 011916 247 FGGHQTR--------------------------------AGVLAW--NSRILSSGSRDR-------------------NI 273 (475)
Q Consensus 247 ~~~h~~~--------------------------------v~~l~~--~~~~l~sgs~dg-------------------~I 273 (475)
+...... ...+++ .+.+++.+..++ .|
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv 285 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASI 285 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEE
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEE
Confidence 7532211 013444 457888777664 48
Q ss_pred EEEECCCCCccEEEecC--cc-------CCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCceeEEEecccc------
Q 011916 274 LQHDLRVSSDYICKLAG--HK-------SEVCGLKWSHDD---RELASGGNDNQLLVWNQHSQQPTLRLTEHTA------ 335 (475)
Q Consensus 274 ~iwd~~~~~~~~~~~~~--h~-------~~V~~l~~s~~~---~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~------ 335 (475)
..+|.++ ++.+-.+.. |. ....-+....+| ..++.++.+|.|+++|..+++.+..+.....
T Consensus 286 ~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~ 364 (677)
T 1kb0_A 286 VALDPDT-GKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGY 364 (677)
T ss_dssp EEECTTT-CCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred EEEECCC-CCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccccc
Confidence 8999984 444433332 21 122223333467 6889999999999999999998876642210
Q ss_pred -----ce------------------------eEEEECCCCCcEEEEec--------------C-----------------
Q 011916 336 -----AV------------------------KAIAWSPHQSSLLASGG--------------G----------------- 355 (475)
Q Consensus 336 -----~v------------------------~~l~~sp~~~~ll~sg~--------------G----------------- 355 (475)
.+ ..++++|+...+++... |
T Consensus 365 d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 444 (677)
T 1kb0_A 365 DKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAK 444 (677)
T ss_dssp CTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCE
T ss_pred CCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccc
Confidence 01 15688888875655321 0
Q ss_pred ---------CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC-cce
Q 011916 356 ---------TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS-LRV 425 (475)
Q Consensus 356 ---------s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~-~~V 425 (475)
...+.|..||+.+++.+..+.++..+....+...+..+++ +..+|.+++||..+++.+..+.... ...
T Consensus 445 ~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~--g~~dg~l~a~D~~tG~~lw~~~~~~~~~~ 522 (677)
T 1kb0_A 445 FFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKLWEAPTGTGVVA 522 (677)
T ss_dssp EECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred ccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEE--ECCCCcEEEEECCCCceeeeeeCCCCccc
Confidence 0127899999999999999887776666677788888888 7889999999999999999887433 222
Q ss_pred EEEEECCCCCEEE-EEeC----------------CCCEEEEecCC
Q 011916 426 LYLATSPDGQTIV-TGAG----------------DETLRFWNVFP 453 (475)
Q Consensus 426 ~~l~~spdg~~l~-s~s~----------------Dg~I~iW~~~~ 453 (475)
.-+.|..+|+.++ +.+. .+.|.+|.+..
T Consensus 523 ~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 523 APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 3455667887544 3333 36788888874
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.1e-10 Score=107.16 Aligned_cols=263 Identities=10% Similarity=0.047 Sum_probs=171.9
Q ss_pred eEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCC
Q 011916 172 NLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQ 251 (475)
Q Consensus 172 ~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~ 251 (475)
..+....+..+.++..+ |+.+|. +++........ ........+. +..|.+++.+|.|..+|.. ++.......+.
T Consensus 63 ~~~~~~~~g~l~v~t~~-l~~~d~-~g~~~~~~~~~-~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~ 136 (330)
T 3hxj_A 63 CRPSIGKDGTIYFGSDK-VYAINP-DGTEKWRFDTK-KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKTKK 136 (330)
T ss_dssp ECCEETTTTEECCSSCE-EEEECC-CGGGGGGSCC------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred cceEEecCCcEEEecCc-EEEECC-CCcEEEEEECC-CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcCCC
Confidence 34444445444455555 888886 55432222211 1112222333 5568889989999999988 77776666555
Q ss_pred CceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 252 TRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 252 ~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
..+.++..+ +..|..++.++.|..+|.. +............+.++...+++.+++ ++ +.|..+| .+++.+..+
T Consensus 137 ~~~~~~~~~~~g~l~vgt~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~ 210 (330)
T 3hxj_A 137 AIYATPIVSEDGTIYVGSNDNYLYAINPD--GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF 210 (330)
T ss_dssp CCCSCCEECTTSCEEEECTTSEEEEECTT--SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE
T ss_pred ceeeeeEEcCCCEEEEEcCCCEEEEECCC--CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE
Confidence 556666665 5667888888999999987 444444444455677777777776544 44 7899999 777777777
Q ss_pred eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC-CeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 331 TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS-QVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
......+.++...+++. +++.. .++.|..+|. +++.+..+.... .+..+.+.+++. |.+ +..+|.|..+|.
T Consensus 211 ~~~~~~~~~~~~~~~g~-l~v~t---~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~-l~v--~t~~ggl~~~d~ 282 (330)
T 3hxj_A 211 YAGYWTVTRPAISEDGT-IYVTS---LDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDT-IYF--GSYDGHLYAINP 282 (330)
T ss_dssp CCSSCCCSCCEECTTSC-EEEEE---TTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSC-EEE--ECTTCEEEEECT
T ss_pred ccCCcceeceEECCCCe-EEEEc---CCCeEEEECC-CCCEeEEeeCCCCccccceEcCCCe-EEE--ecCCCCEEEECC
Confidence 66667788999998886 44432 5788888884 666666654433 344556665664 444 567889999995
Q ss_pred CCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 410 PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 410 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
+++.+..+......+.++....+|. |..++.+|.+++......+.
T Consensus 283 -~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 283 -DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp -TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC-----
T ss_pred -CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEecccccc
Confidence 7777777665566677888888886 55588999999988765543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-08 Score=100.52 Aligned_cols=250 Identities=14% Similarity=0.148 Sum_probs=163.2
Q ss_pred eEEEEECCC-----CcEEEEeeCCC-CCcEEEEEE-----------c--CCCCEEEEE-eCCCeEEEEECCCC----eee
Q 011916 189 CVYLWTASN-----SKVTRLCDLGP-GDSVCSVQW-----------T--REGSYISVG-TNLGQVQVWDGTQC----KRV 244 (475)
Q Consensus 189 ~V~lw~~~~-----~~~~~~~~~~~-~~~V~~v~~-----------s--pdg~~la~g-~~dg~v~iwd~~~~----~~~ 244 (475)
.|.+.|+.. ++++..+.+.. .+....+.| + .++++|++. ..++.|.|+|+.+. +.+
T Consensus 44 ~la~vDvdp~s~ty~~vi~~~~~p~~gde~HH~gwn~css~~~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~ 123 (462)
T 2ece_A 44 FIAVVDVNPKSETYSKIVHKVELPYINDELHHFGWNACSSALCPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKII 123 (462)
T ss_dssp EEEEEECCTTSTTTTSEEEEEECSSSCCCBCCCEESCCGGGGSTTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEE
T ss_pred eEEEEECCCCCCCcceEEEEEECCCCCCcccccchhhhhhhcccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceee
Confidence 455666665 67777776643 234555556 6 778877764 45788999999765 666
Q ss_pred EEec------C-CCCceEEEEe--CCCEEEEEeCC------CcEEEEECCCCCccEEEecCcc---CCEEEEEEcCCCCE
Q 011916 245 RTFG------G-HQTRAGVLAW--NSRILSSGSRD------RNILQHDLRVSSDYICKLAGHK---SEVCGLKWSHDDRE 306 (475)
Q Consensus 245 ~~~~------~-h~~~v~~l~~--~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~h~---~~V~~l~~s~~~~~ 306 (475)
++++ . ....-..+.. ++ +++++..+ +.|.+.|.. ..+.+..+.... ..-..+-|+|+++.
T Consensus 124 k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~-T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~ 201 (462)
T 2ece_A 124 KVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY-SFEPLGKWEIDRGDQYLAYDFWWNLPNEV 201 (462)
T ss_dssp EEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT-TCCEEEECCSBCTTCCCCCCEEEETTTTE
T ss_pred eeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC-CCeEEEEEccCCCCccccceEEECCCCCE
Confidence 6663 0 0111222222 45 66665554 789999988 556666665322 22345788999998
Q ss_pred EEEEe-------------------CCCcEEEEECCCCceeEEEecc--ccceeEEEE--CCCCCcEEEEec---CCCCCe
Q 011916 307 LASGG-------------------NDNQLLVWNQHSQQPTLRLTEH--TAAVKAIAW--SPHQSSLLASGG---GTADRC 360 (475)
Q Consensus 307 lasg~-------------------~Dg~I~iwd~~~~~~~~~~~~h--~~~v~~l~~--sp~~~~ll~sg~---Gs~d~~ 360 (475)
+++.. .+.+|.+||+.+++.+.++... ......|.| +|++++.++++. -..+++
T Consensus 202 mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~ 281 (462)
T 2ece_A 202 LVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSS 281 (462)
T ss_dssp EEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEE
T ss_pred EEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCce
Confidence 88874 3689999999998877777642 134455655 999998777641 003567
Q ss_pred EEEEECCCCce--eeee--cC-----------------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC---CceEE
Q 011916 361 IRFWNTSNGHQ--LNSV--DT-----------------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS---MAKVS 416 (475)
Q Consensus 361 I~iwd~~~~~~--~~~~--~~-----------------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~---~~~~~ 416 (475)
|.+|....++. ...+ .. ......+.+++||++|+++ ....+.|.+||+.. .+.+.
T Consensus 282 V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVS-nrg~d~VavfdV~d~~~~~lv~ 360 (462)
T 2ece_A 282 IWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLS-LWGIGEVRQYDISNPFKPVLTG 360 (462)
T ss_dssp EEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEE-ETTTTEEEEEECSSTTSCEEEE
T ss_pred EEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEE-eCCCCEEEEEEecCCCCcEEEE
Confidence 87766544321 1111 10 3457889999999999987 44678999999852 34555
Q ss_pred EecCCC--------------cceEEEEECCCCCEEEEEe
Q 011916 417 TLTGHS--------------LRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 417 ~l~~h~--------------~~V~~l~~spdg~~l~s~s 441 (475)
.+.... +....++++|||++|+++.
T Consensus 361 ~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 361 KVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 553220 1357899999999999988
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-08 Score=93.04 Aligned_cols=246 Identities=7% Similarity=-0.001 Sum_probs=160.3
Q ss_pred EEEEcCCeEEEEECCCCcEE-----EEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEecCCCCceE
Q 011916 182 LAVGLGTCVYLWTASNSKVT-----RLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKRVRTFGGHQTRAG 255 (475)
Q Consensus 182 la~~~~~~V~lw~~~~~~~~-----~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~~~~~~~h~~~v~ 255 (475)
|..+..+.|+.+++...... ..+. .....+.+++|++++..|+++. .++.|.+++.........+........
T Consensus 4 l~~~~~~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~ 82 (267)
T 1npe_A 4 LLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE 82 (267)
T ss_dssp EEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE
T ss_pred EEEEcCCeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc
Confidence 33444568888888765431 1221 1124578999999766565554 568999999876654444433334667
Q ss_pred EEEeC--CCEE-EEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCceeEE
Q 011916 256 VLAWN--SRIL-SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN---DNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 256 ~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~---Dg~I~iwd~~~~~~~~~ 329 (475)
.++++ +..| ++-...+.|.++++.... ..............++++|++..|..+.. .+.|..+++.... ...
T Consensus 83 ~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~ 160 (267)
T 1npe_A 83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRI 160 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEE
T ss_pred EEEEEecCCeEEEEECCCCEEEEEEcCCCC-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEE
Confidence 77774 3444 455567889999987322 22222222256789999997666655554 3688888886433 222
Q ss_pred Ee-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 330 LT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 330 ~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
+. ..-.....+++++++..|+++.. ..+.|..+|.........+........++.. +..|+++ ....+.|.++|
T Consensus 161 ~~~~~~~~P~gia~d~~~~~lyv~d~--~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d--~~~lyva-~~~~~~v~~~d 235 (267)
T 1npe_A 161 LAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTNSVIAMD 235 (267)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTTEEEEEE
T ss_pred EEECCCCCCcEEEEcCCCCEEEEEEC--CCCEEEEEecCCCceEEEecCCCCceEEEEe--CCEEEEE-ECCCCeEEEEe
Confidence 22 23345789999999888888765 6789999999765444444444455667654 5566654 55678999999
Q ss_pred CCCCceEEEecCCC-cceEEEEECCCCC
Q 011916 409 YPSMAKVSTLTGHS-LRVLYLATSPDGQ 435 (475)
Q Consensus 409 ~~~~~~~~~l~~h~-~~V~~l~~spdg~ 435 (475)
..+++.+..+.... ....++++.|++.
T Consensus 236 ~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 236 LAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp TTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred CCCCCceEEEccccccccceeeecCccC
Confidence 99999888886443 3477888888764
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-09 Score=116.10 Aligned_cols=258 Identities=13% Similarity=0.123 Sum_probs=168.4
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCC-CCCcEEEEEEcC---CCCEEEEEe------CCCeEEEEECCCCeeeEEe
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLG-PGDSVCSVQWTR---EGSYISVGT------NLGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~-~~~~V~~v~~sp---dg~~la~g~------~dg~v~iwd~~~~~~~~~~ 247 (475)
.+.+++++.++.|+.+|..+|+..-..... +......+..+| ++ .+++++ .+|.|..||..+++.+..+
T Consensus 121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 356666777999999999999987665543 211111111122 44 455554 2689999999999998776
Q ss_pred cCCC--C-----------------------------ceEEEEeC--CCEEEEEeCCCc-------------------EEE
Q 011916 248 GGHQ--T-----------------------------RAGVLAWN--SRILSSGSRDRN-------------------ILQ 275 (475)
Q Consensus 248 ~~h~--~-----------------------------~v~~l~~~--~~~l~sgs~dg~-------------------I~i 275 (475)
.... . ....++++ ..+++.+..++. |..
T Consensus 200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~A 279 (689)
T 1yiq_A 200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVA 279 (689)
T ss_dssp ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEE
T ss_pred cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEE
Confidence 5210 0 00134553 578888887764 999
Q ss_pred EECCCCCccEEEecC--cc-------CCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeccc-c-------
Q 011916 276 HDLRVSSDYICKLAG--HK-------SEVCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQPTLRLTEHT-A------- 335 (475)
Q Consensus 276 wd~~~~~~~~~~~~~--h~-------~~V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~~~~h~-~------- 335 (475)
+|.++ ++.+-.+.. |. ..+.......+|+ .++.++.+|.++++|.++++.+....... .
T Consensus 280 lD~~T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~ 358 (689)
T 1yiq_A 280 VNADT-GEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM 358 (689)
T ss_dssp EETTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred EEccC-CceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence 99984 444444332 21 1222222223565 78899999999999999999875432110 0
Q ss_pred -------------------------------ceeEEEECCCCCcEEEEec------------------------C-----
Q 011916 336 -------------------------------AVKAIAWSPHQSSLLASGG------------------------G----- 355 (475)
Q Consensus 336 -------------------------------~v~~l~~sp~~~~ll~sg~------------------------G----- 355 (475)
.-..++++|+...+++... |
T Consensus 359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 438 (689)
T 1yiq_A 359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM 438 (689)
T ss_dssp TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence 0112678888775554310 0
Q ss_pred -------------CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 356 -------------TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 356 -------------s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
..++.|+.||+.+|+.+..+..+.....-.+...+..+++ |+.||.|+.||..+++.+.+++...
T Consensus 439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--gt~dg~l~a~D~~tG~~lw~~~~~~ 516 (689)
T 1yiq_A 439 MPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVFE--GSADGRVIAYAADTGEKLWEQPAAS 516 (689)
T ss_dssp CCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSS
T ss_pred cCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEEE--ECCCCcEEEEECCCCccceeeeCCC
Confidence 0148899999999999998877666655567778888888 7899999999999999998887543
Q ss_pred cc-eEEEEECCCCCEEEE
Q 011916 423 LR-VLYLATSPDGQTIVT 439 (475)
Q Consensus 423 ~~-V~~l~~spdg~~l~s 439 (475)
+. ..-+.|..||+..++
T Consensus 517 ~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 517 GVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp CCCSCCEEEEETTEEEEE
T ss_pred CcccCceEEEECCEEEEE
Confidence 22 234666778875443
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-10 Score=109.61 Aligned_cols=248 Identities=8% Similarity=-0.042 Sum_probs=164.6
Q ss_pred EEecCCC--CEEEEE----------cCCeEEEEECCCCcEEEEeeCCC------CCcEEEEEEcCCCCEEEEEeC--CCe
Q 011916 173 LVDWSSQ--NVLAVG----------LGTCVYLWTASNSKVTRLCDLGP------GDSVCSVQWTREGSYISVGTN--LGQ 232 (475)
Q Consensus 173 ~l~ws~~--~~la~~----------~~~~V~lw~~~~~~~~~~~~~~~------~~~V~~v~~spdg~~la~g~~--dg~ 232 (475)
.+.++++ .++.+. .++.|.+||..+++....+.++. ......++++|||++|+++.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 3667775 344443 26789999999999998886541 123558899999999999875 467
Q ss_pred EEE--EECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCC----CCccEEE----ecCccCCEEEEEEc
Q 011916 233 VQV--WDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRV----SSDYICK----LAGHKSEVCGLKWS 301 (475)
Q Consensus 233 v~i--wd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~----~~~~~~~----~~~h~~~V~~l~~s 301 (475)
|.+ +|+.+ +..+... +. ..+..+ ...+++.+.|+.+.+.|+.. .++.... +.-...+. . .
T Consensus 149 v~V~~iD~~t---v~~i~v~-~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~ 219 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSA-SC-FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-A 219 (368)
T ss_dssp EEEEETTTEE---EEEEECS-SC-CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-E
T ss_pred EEEEEEchhh---ceEEECC-Cc-eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-c
Confidence 888 99877 4444321 11 112233 35666777889998888874 2322210 11112233 3 5
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCce--eEEEec----------cccceeEEEECCCCCcEEEEecCC-C-----CCeEEE
Q 011916 302 HDDRELASGGNDNQLLVWNQHSQQP--TLRLTE----------HTAAVKAIAWSPHQSSLLASGGGT-A-----DRCIRF 363 (475)
Q Consensus 302 ~~~~~lasg~~Dg~I~iwd~~~~~~--~~~~~~----------h~~~v~~l~~sp~~~~ll~sg~Gs-~-----d~~I~i 363 (475)
+++..++..+. +.|.+.|+..... +..+.- .......++++|+++.++++.... . ++.+.+
T Consensus 220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~V 298 (368)
T 1mda_H 220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS 298 (368)
T ss_dssp TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEE
Confidence 66666666666 9999999875432 111110 111122378999999888763200 1 235669
Q ss_pred EECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEEC
Q 011916 364 WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATS 431 (475)
Q Consensus 364 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s 431 (475)
+|+.+++.+..+..+.....+.|+++|+.++++....++.|.++|+.+++.+.++..... ...+++.
T Consensus 299 iD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~ 365 (368)
T 1mda_H 299 VTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQ 365 (368)
T ss_dssp EESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECC
T ss_pred EECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEee
Confidence 999999999999887789999999999977776443689999999999999999875543 3455554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.20 E-value=6.6e-09 Score=99.32 Aligned_cols=224 Identities=12% Similarity=0.111 Sum_probs=147.1
Q ss_pred ceeEEecCCC-C-EEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 170 YLNLVDWSSQ-N-VLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.....|+++ + ++.++. ++.|+.|+. +++..... .+...+.+++++++|+++++...++.|.+|+.. ++....
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~--~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~ 121 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLL--DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLL 121 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEE--ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEe--CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEE
Confidence 4566889886 4 555554 789999998 45543333 345678999999999966665566889999976 543322
Q ss_pred ecCC----CCceEEEEeC--CCEEEE----EeC-------------CCcEEEEECCCCCccEEEecCccCCEEEEEEcCC
Q 011916 247 FGGH----QTRAGVLAWN--SRILSS----GSR-------------DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 247 ~~~h----~~~v~~l~~~--~~~l~s----gs~-------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~ 303 (475)
.... ...+..++++ |+++++ |.. .+.|..+|.. .+...... .......++|+||
T Consensus 122 ~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~-~g~~~~~~--~~~~p~gl~~spd 198 (305)
T 3dr2_A 122 VGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD-GSPLQRMA--DLDHPNGLAFSPD 198 (305)
T ss_dssp ECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-SCCCEEEE--EESSEEEEEECTT
T ss_pred EeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-CCcEEEEe--cCCCCcceEEcCC
Confidence 2111 1345667774 566665 332 2456666664 23332222 4456789999999
Q ss_pred CCEEEEEeCC------CcEEEEECCCCcee--EEE-eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 304 DRELASGGND------NQLLVWNQHSQQPT--LRL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 304 ~~~lasg~~D------g~I~iwd~~~~~~~--~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
++.|+.+... +.|++|++..+... ..+ .........+++.++|. |.++. .+.|.+|+. +++.+..
T Consensus 199 g~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~----~~gv~~~~~-~g~~~~~ 272 (305)
T 3dr2_A 199 EQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSS----GTGVCVFDS-DGQLLGH 272 (305)
T ss_dssp SSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECC----SSEEEEECT-TSCEEEE
T ss_pred CCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEec----CCcEEEECC-CCCEEEE
Confidence 9988887665 68999998765411 111 11234456899999998 55532 335999998 6777777
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 375 VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 375 ~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
+.....+.+++|.++++.|+++ .. +.|+.+++
T Consensus 273 ~~~~~~~~~~~f~~d~~~L~it--~~-~~l~~~~~ 304 (305)
T 3dr2_A 273 IPTPGTASNCTFDQAQQRLFIT--GG-PCLWMLPL 304 (305)
T ss_dssp EECSSCCCEEEECTTSCEEEEE--ET-TEEEEEEC
T ss_pred EECCCceeEEEEeCCCCEEEEE--cC-CeEEEEEC
Confidence 7766678999999999988883 33 44554443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.7e-11 Score=120.99 Aligned_cols=203 Identities=13% Similarity=0.014 Sum_probs=115.5
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccC-CEE
Q 011916 220 EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS-EVC 296 (475)
Q Consensus 220 dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~-~V~ 296 (475)
++..+++++.||.|+.||..+++.+..+.. ..+.+..+ ++..+++++.||.|..||..+ ++.+.....+.. .+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t-G~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN-NEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC-CceeeeeeccCccccc
Confidence 578899999999999999999999988876 33333222 456788888999999999973 443333332211 110
Q ss_pred -EEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 297 -GLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 297 -~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
+..+. ++..+++|+.|+.|+.||..+++.+..+..+. ...++|++..+++.+ .|+.|+.||..+|+.+..+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~---~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGR---TEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------EEEEE---EEEEEECCCSSSSSCCCEE
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEe---cCCEEEEEECCCCCEEEeE
Confidence 00111 34577888889999999999999887776543 245567776555533 6899999999999987665
Q ss_pred cCCCCeeEEEEcCCC---CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCE
Q 011916 376 DTGSQVCNLAWSKNV---NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQT 436 (475)
Q Consensus 376 ~~~~~v~~l~~s~~~---~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 436 (475)
.... .....+..+. ..+++ +..+|.|+.||..+++.+.........+....++.+|..
T Consensus 157 ~~~~-~~~~~~~~~~~~~~~v~~--~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 157 TYFD-YAASLPEDDVDYKMSHFV--SNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGLR 217 (369)
T ss_dssp EEEE-ECCBCCCCCTTCCCCEEE--EETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSCE
T ss_pred eccc-ccCccccCCccccceEEE--ECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCceE
Confidence 4221 1223333332 45666 668999999999999988877643332333455666653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-08 Score=92.31 Aligned_cols=205 Identities=12% Similarity=0.063 Sum_probs=145.5
Q ss_pred cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEECCCCeeeEEecCC-CCceEEEEeCCCEE-EEEeCCCcE
Q 011916 199 KVTRLCDLGPGDSVCSVQWTREGSYISVGTN---LGQVQVWDGTQCKRVRTFGGH-QTRAGVLAWNSRIL-SSGSRDRNI 273 (475)
Q Consensus 199 ~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---dg~v~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~l-~sgs~dg~I 273 (475)
+++..+..+.......+.|++++ .|++++. ++.|.++|+.+++.+..+.-. ......++++++.| ++...++.+
T Consensus 10 ~vv~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v 88 (266)
T 2iwa_A 10 EVLNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIG 88 (266)
T ss_dssp EEEEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEE
T ss_pred eEEEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEE
Confidence 34555543433457899999986 4555542 579999999999999887632 22334567766555 445568899
Q ss_pred EEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccc-----cceeEEEECCCCCc
Q 011916 274 LQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHT-----AAVKAIAWSPHQSS 348 (475)
Q Consensus 274 ~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~ 348 (475)
.++|.. ..+.+..+..-... ...+++||+.|+++..++.|.++|..+.+.+..+.-.. ..++.+.|. ++ .
T Consensus 89 ~viD~~-t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~ 163 (266)
T 2iwa_A 89 FIYDRR-TLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-E 163 (266)
T ss_dssp EEEETT-TTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-E
T ss_pred EEEECC-CCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-E
Confidence 999998 55666665432122 23355678877777778999999999988777665321 136678888 66 4
Q ss_pred EEEEecCCCCCeEEEEECCCCceeeeecCC--------------CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC
Q 011916 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTG--------------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 349 ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
+++... .++.|.+.|..+++.+..+... .....++|+|+++.++++ +...+.|++.++...
T Consensus 164 lyvn~~--~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVT-gk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIW--QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVT-GKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEET--TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEE-ETTCSEEEEEEEEEC
T ss_pred EEEecC--CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEE-CCCCCeEEEEEEecc
Confidence 766654 6889999999999999988653 356899999999988886 667788888887543
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.5e-09 Score=110.89 Aligned_cols=244 Identities=10% Similarity=0.051 Sum_probs=175.6
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEE-c-CCCCEEEEEe------------------CCCeEEEEECCCCeeeEE
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQW-T-REGSYISVGT------------------NLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~-s-pdg~~la~g~------------------~dg~v~iwd~~~~~~~~~ 246 (475)
++.|.+.|+.+.++.+++++........+++ + |+++++++++ .++.|.++|.++.+.+.+
T Consensus 111 ~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~q 190 (595)
T 1fwx_A 111 NTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQ 190 (595)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEE
Confidence 5679999999999999887766677889998 5 9999999885 246899999999998888
Q ss_pred ecC-CCCceEEEEeCCCEEEEEeCCC---------------cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE
Q 011916 247 FGG-HQTRAGVLAWNSRILSSGSRDR---------------NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG 310 (475)
Q Consensus 247 ~~~-h~~~v~~l~~~~~~l~sgs~dg---------------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg 310 (475)
+.- ....-..+..+++++++.+.+. .|.+.|..... .+.++|+++..
T Consensus 191 I~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~----------------~~v~~Gk~~~i- 253 (595)
T 1fwx_A 191 VLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE----------------KAIAAGDYQEL- 253 (595)
T ss_dssp EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH----------------HHHHHTCSEEE-
T ss_pred EEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeecccee----------------EeccCCCeeEE-
Confidence 762 2333444555788888887654 23333332100 12234443333
Q ss_pred eCCCcEEEEECCC--Cce-eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc------------eeeee
Q 011916 311 GNDNQLLVWNQHS--QQP-TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH------------QLNSV 375 (475)
Q Consensus 311 ~~Dg~I~iwd~~~--~~~-~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~------------~~~~~ 375 (475)
+.|.|.|.++ ++. +..+.. .....++.++|||+++++++. .+.+|.++|+.+.+ .+..+
T Consensus 254 ---~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~--~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v 327 (595)
T 1fwx_A 254 ---NGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENADPRSAVVAEP 327 (595)
T ss_dssp ---TTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCCCGGGGEEECC
T ss_pred ---CcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCC--CCCeEEEEECcccccccccccCcccceEEEc
Confidence 5599999998 555 444433 345688999999999999976 89999999998653 45666
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC----------CceEEEecCCCcce-----EEEEECCCCCEEEEE
Q 011916 376 DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS----------MAKVSTLTGHSLRV-----LYLATSPDGQTIVTG 440 (475)
Q Consensus 376 ~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~----------~~~~~~l~~h~~~V-----~~l~~spdg~~l~s~ 440 (475)
..+.....++|+++| .++++ ..-+++|.+||+.. .+.+..+..|-.+- .++.++|||++|+++
T Consensus 328 ~vG~gP~h~aF~~dG-~aY~t-~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 328 ELGLGPLHTAFDGRG-NAYTS-LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp BCCSCEEEEEECTTS-EEEEE-ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEE
T ss_pred CCCCCcceEEECCCC-eEEEE-EecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEc
Confidence 778889999999999 65554 77899999999977 56777777665432 122458999999987
Q ss_pred eC---CCCE----------EEEecCCCC
Q 011916 441 AG---DETL----------RFWNVFPSL 455 (475)
Q Consensus 441 s~---Dg~I----------~iW~~~~~~ 455 (475)
.. |..+ .++|+..++
T Consensus 406 Nk~skdr~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 406 SKFSKDRFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp ESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred CCCCccccccCCCCCCCcceEEEcCCCc
Confidence 54 4432 788885433
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-08 Score=91.08 Aligned_cols=195 Identities=9% Similarity=0.019 Sum_probs=142.4
Q ss_pred CceeEEecCCCC-EEEEEc---CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee
Q 011916 169 FYLNLVDWSSQN-VLAVGL---GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKR 243 (475)
Q Consensus 169 ~~v~~l~ws~~~-~la~~~---~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~ 243 (475)
.+..-+.|+++. ++.++. ++.|.+.|..++++...+.++.......+++. |+.|++++ .++.+.++|..+.+.
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcE
Confidence 456778999854 444432 47999999999999998876544444455554 55565555 478999999999999
Q ss_pred eEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc-----CCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 244 VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK-----SEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
+.++......-..+++++..|+++..++.|.++|..+ .+.+..+.-.. ..+..+.|. +|...+....++.|.+
T Consensus 99 ~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t-~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 99 IKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHT-FKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIAR 176 (266)
T ss_dssp EEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTT-CCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCC-CcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEE
Confidence 9988633233356888887777777789999999974 44444443211 246788888 7765555556789999
Q ss_pred EECCCCceeEEEeccc-------------cceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 319 WNQHSQQPTLRLTEHT-------------AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~-------------~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.|..+++.+..+.-.. .....|+|+|+++.+++++. ..+.+...++...
T Consensus 177 ID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk--~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 177 ISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK--LWPKLFEIKLHLV 238 (266)
T ss_dssp EETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET--TCSEEEEEEEEEC
T ss_pred EECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC--CCCeEEEEEEecc
Confidence 9999999888776321 35589999999999999986 7888888887654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.11 E-value=9e-10 Score=105.95 Aligned_cols=251 Identities=14% Similarity=0.087 Sum_probs=167.9
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEE
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLA 258 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~ 258 (475)
+.+.+++.++.|+.|| .+++....... ....+.++...++|. |.+++.+ |..+|. +++.+..+...........
T Consensus 31 g~l~v~t~~~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~ 104 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN-TDGSVKWFFKS-GEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFT 104 (330)
T ss_dssp SCEECSSTTTTTEEEC-TTSCEEESSCG-GGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEE
T ss_pred CeEEEEcCCCEEEEEC-CCCcEEEEEec-CCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCce
Confidence 3566666688899999 88876544432 234456777766665 5666655 888885 6655544443333233333
Q ss_pred eCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecccccee
Q 011916 259 WNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVK 338 (475)
Q Consensus 259 ~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~ 338 (475)
..+..|..++.++.|..+|.. +........+...+.++...+++. |..++.++.|..+|.. ++.+..+......+.
T Consensus 105 ~~~~~l~v~t~~~~l~~~d~~--g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~ 180 (330)
T 3hxj_A 105 IFEDILYVTSMDGHLYAINTD--GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITS 180 (330)
T ss_dssp EETTEEEEECTTSEEEEECTT--SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCS
T ss_pred EECCEEEEEecCCEEEEEcCC--CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCcee
Confidence 347778889999999999987 334444444455566667776775 6667788999999998 777777766566778
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q 011916 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST 417 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~ 417 (475)
++...+++. +++. . +.|..+| .+++.+..... ...+.++...++|...+ +..++.|..+| .+++.+..
T Consensus 181 ~~~~d~~g~-l~v~----t-~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v---~t~~~gl~~~~-~~g~~~~~ 249 (330)
T 3hxj_A 181 AASIGKDGT-IYFG----S-DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYV---TSLDGHLYAIN-PDGTEKWR 249 (330)
T ss_dssp CCEECTTCC-EEEE----S-SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEE---EETTTEEEEEC-TTSCEEEE
T ss_pred eeEEcCCCE-EEEE----e-CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEE---EcCCCeEEEEC-CCCCEeEE
Confidence 888887877 4442 2 8899999 77777766653 35678888888876555 44678888887 46666666
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+......+..+.+.+++. |..++.+|.|..+|.
T Consensus 250 ~~~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 250 FKTGKRIESSPVIGNTDT-IYFGSYDGHLYAINP 282 (330)
T ss_dssp EECSSCCCSCCEECTTSC-EEEECTTCEEEEECT
T ss_pred eeCCCCccccceEcCCCe-EEEecCCCCEEEECC
Confidence 655544455566666664 566777878888885
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.8e-08 Score=100.64 Aligned_cols=277 Identities=9% Similarity=0.003 Sum_probs=173.6
Q ss_pred CCEEEEEc-CCeEEEEEC-CCCcEEEEeeCCCCCcE----------EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 179 QNVLAVGL-GTCVYLWTA-SNSKVTRLCDLGPGDSV----------CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 179 ~~~la~~~-~~~V~lw~~-~~~~~~~~~~~~~~~~V----------~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.+++++. ++.|+-+|. .+++..=.........+ ..++. ++..+++++.|+.|..+|..+++.+..
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE 140 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 44555566 688999999 89987655543221110 11222 356788899999999999999999877
Q ss_pred ecCCCC----ceE-EEEeCCCEEEEEeC------CCcEEEEECCCCCccEEEecCccCC---------------------
Q 011916 247 FGGHQT----RAG-VLAWNSRILSSGSR------DRNILQHDLRVSSDYICKLAGHKSE--------------------- 294 (475)
Q Consensus 247 ~~~h~~----~v~-~l~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h~~~--------------------- 294 (475)
+..... .+. .....+..+++++. ++.|..+|.++ ++.+-.+......
T Consensus 141 ~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~ 219 (571)
T 2ad6_A 141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKT-GELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL 219 (571)
T ss_dssp EECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTT-CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred ecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCC-CcEEEEEccCCCccccccCccccccccccccccc
Confidence 653220 111 11123455666654 78999999984 4444333221100
Q ss_pred -----------------EEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEEecc--cc----
Q 011916 295 -----------------VCGLKWSHDDRELASGGND----------------NQLLVWNQHSQQPTLRLTEH--TA---- 335 (475)
Q Consensus 295 -----------------V~~l~~s~~~~~lasg~~D----------------g~I~iwd~~~~~~~~~~~~h--~~---- 335 (475)
...+++.++...++.+..+ +.|..+|.++++.+..+... ..
T Consensus 220 g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~ 299 (571)
T 2ad6_A 220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA 299 (571)
T ss_dssp HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred ccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccc
Confidence 0134566666677666532 25999999999988877532 11
Q ss_pred ceeE---EEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC--------------Ce---------------
Q 011916 336 AVKA---IAWSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGS--------------QV--------------- 381 (475)
Q Consensus 336 ~v~~---l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~--------------~v--------------- 381 (475)
.+.. +....+|+ .+++.+. .+|.++++|..+|+.+..+.... ++
T Consensus 300 ~~~~p~l~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~ 377 (571)
T 2ad6_A 300 GVNQMVLTDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTN 377 (571)
T ss_dssp CCCCCEEEEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEE
T ss_pred cCCCCEEEecccCCcEEEEEEEeC--CCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceE
Confidence 1111 22223564 3555544 79999999999999887764332 11
Q ss_pred -----------eEEEEcCCCCeEEEEEe-----------------------------------cCCCeEEEEECCCCceE
Q 011916 382 -----------CNLAWSKNVNELVSTHG-----------------------------------YSQNQIMVWKYPSMAKV 415 (475)
Q Consensus 382 -----------~~l~~s~~~~~l~~~~g-----------------------------------~~dg~I~iwd~~~~~~~ 415 (475)
..++++|+...+++.+. ..+|.|..||..+++.+
T Consensus 378 ~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~ 457 (571)
T 2ad6_A 378 ICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAK 457 (571)
T ss_dssp ESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEE
T ss_pred ECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEE
Confidence 23578888777776421 13578999999999988
Q ss_pred EEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 416 STLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
.++... ..+....+...+..++.++.||.|+.||..+++......
T Consensus 458 W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 458 WTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 776532 222222223346677789999999999999888765543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.5e-08 Score=97.01 Aligned_cols=209 Identities=11% Similarity=0.037 Sum_probs=141.7
Q ss_pred CceeEEecCCC-CEEEEEc------CCeEEEEECCCCcEEEEeeCC-----CCCcEEEEEEcCCCCEE-EEEe---CCCe
Q 011916 169 FYLNLVDWSSQ-NVLAVGL------GTCVYLWTASNSKVTRLCDLG-----PGDSVCSVQWTREGSYI-SVGT---NLGQ 232 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~------~~~V~lw~~~~~~~~~~~~~~-----~~~~V~~v~~spdg~~l-a~g~---~dg~ 232 (475)
..+..+.++++ +++++.. +..|.+||..++++...+.+. +...+..+++++++..+ ++.. .++.
T Consensus 67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~ 146 (343)
T 2qe8_A 67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA 146 (343)
T ss_dssp SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence 45788999886 4555543 479999999999977776653 22456899999865555 4444 5789
Q ss_pred EEEEECCCCeeeEEecCCCCce---EEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE
Q 011916 233 VQVWDGTQCKRVRTFGGHQTRA---GVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS 309 (475)
Q Consensus 233 v~iwd~~~~~~~~~~~~h~~~v---~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las 309 (475)
|.+||+.+++..+.+.+|.... ..+..++..+.+.+.++.+..|. ..+.+|+|+|+++.|++
T Consensus 147 i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~ 211 (343)
T 2qe8_A 147 LIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYL 211 (343)
T ss_dssp EEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEE
T ss_pred EEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEE
Confidence 9999999998887776653211 23344666677777777775553 13678999999998888
Q ss_pred EeCCC-cEEEEECC---CCc-----ee--EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-
Q 011916 310 GGNDN-QLLVWNQH---SQQ-----PT--LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT- 377 (475)
Q Consensus 310 g~~Dg-~I~iwd~~---~~~-----~~--~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~- 377 (475)
+..++ .|+.++.. .+. .. ....++......++++++|. ++++.. .++.|.+||..+++.......
T Consensus 212 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~--~~~~V~~~d~~~G~~~~~~~~~ 288 (343)
T 2qe8_A 212 SPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDL--AHSAIGVITSADRAYKLLVTDE 288 (343)
T ss_dssp EESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEG--GGTEEEEEETTTTEEEEEEECG
T ss_pred EeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEcc--CCCeEEEEECCCCCEEEEEECC
Confidence 87765 55555532 111 00 01123444667899999987 666554 689999999866654333322
Q ss_pred -CCCeeEEEEcCCCCeEEE
Q 011916 378 -GSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 378 -~~~v~~l~~s~~~~~l~~ 395 (475)
...+..++|.+++..+++
T Consensus 289 ~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 289 KLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp GGSCEEEEEECTTSCEEEE
T ss_pred ceecCCeeEECCCCcEEEE
Confidence 356889999998876666
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-07 Score=93.92 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=145.2
Q ss_pred EEEEEc-CCeEEEEECCCC----cEEEEee---C--C-CCCcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCee
Q 011916 181 VLAVGL-GTCVYLWTASNS----KVTRLCD---L--G-PGDSVCSVQWTREGSYISVGTNL------GQVQVWDGTQCKR 243 (475)
Q Consensus 181 ~la~~~-~~~V~lw~~~~~----~~~~~~~---~--~-~~~~V~~v~~spdg~~la~g~~d------g~v~iwd~~~~~~ 243 (475)
+++.+. ++.|+++|..+. ++.+.++ + . ....-..+...|+| +++++..+ |.|.++|.++.+.
T Consensus 98 l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v 176 (462)
T 2ece_A 98 LIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEP 176 (462)
T ss_dssp EEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCE
T ss_pred EEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeE
Confidence 444444 678999999766 6666662 1 0 11244567788999 66665555 7899999999999
Q ss_pred eEEecCCCC---ceEEEEe--CCCEEEEEe-------------------CCCcEEEEECCCCCccEEEecCc--cCCEEE
Q 011916 244 VRTFGGHQT---RAGVLAW--NSRILSSGS-------------------RDRNILQHDLRVSSDYICKLAGH--KSEVCG 297 (475)
Q Consensus 244 ~~~~~~h~~---~v~~l~~--~~~~l~sgs-------------------~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~ 297 (475)
+.++..... .-..+.| +++.+++.. .+.+|.+||+.. .+.+..+..- ......
T Consensus 177 ~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~-~k~~~tI~vg~~g~~P~~ 255 (462)
T 2ece_A 177 LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRK-RKRIHSLTLGEENRMALE 255 (462)
T ss_dssp EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTT-TEEEEEEESCTTEEEEEE
T ss_pred EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCC-CcEeeEEecCCCCCccce
Confidence 998873222 2334655 457777764 378999999984 5555555442 123455
Q ss_pred EEE--cCCCCEEEEEe------CCCcEEEEECCCCce--eEEE--ecc----------------ccceeEEEECCCCCcE
Q 011916 298 LKW--SHDDRELASGG------NDNQLLVWNQHSQQP--TLRL--TEH----------------TAAVKAIAWSPHQSSL 349 (475)
Q Consensus 298 l~~--s~~~~~lasg~------~Dg~I~iwd~~~~~~--~~~~--~~h----------------~~~v~~l~~sp~~~~l 349 (475)
+.| +|+++++.+++ .+++|.+|....++. .+.+ ... ......|.+++||++|
T Consensus 256 i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfL 335 (462)
T 2ece_A 256 LRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFL 335 (462)
T ss_dssp EEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEE
T ss_pred eEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEE
Confidence 656 99999888877 456888776654431 1111 110 2457889999999999
Q ss_pred EEEecCCCCCeEEEEECCC---CceeeeecCCC---------------CeeEEEEcCCCCeEEEEE
Q 011916 350 LASGGGTADRCIRFWNTSN---GHQLNSVDTGS---------------QVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 350 l~sg~Gs~d~~I~iwd~~~---~~~~~~~~~~~---------------~v~~l~~s~~~~~l~~~~ 397 (475)
+++.- ..+.|.+||+.. .+.+..+..++ ....++++|+|++|+++.
T Consensus 336 YVSnr--g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 336 YLSLW--GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEET--TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEeC--CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 99976 678999999863 35566665542 358899999999999964
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=7.7e-08 Score=102.21 Aligned_cols=274 Identities=12% Similarity=0.091 Sum_probs=173.7
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCeeeEEecC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR--EGSYISVGTN------LGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~------dg~v~iwd~~~~~~~~~~~~ 249 (475)
.+.+++++.++.|+.+|..+|+..-............+.-+| .+..++++.. +|.|..+|..+++.+..+..
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 355666677999999999999987666542111000111111 2345666543 58999999999999887752
Q ss_pred C--C-C----------------------------ceEEEEeC--CCEEEEEeCCC-------------------cEEEEE
Q 011916 250 H--Q-T----------------------------RAGVLAWN--SRILSSGSRDR-------------------NILQHD 277 (475)
Q Consensus 250 h--~-~----------------------------~v~~l~~~--~~~l~sgs~dg-------------------~I~iwd 277 (475)
. . . ....++++ ..+++.+..++ .|..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 1 0 0 00124553 47888887766 388999
Q ss_pred CCCCCccEEEecC--cc-------CCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeccc-----------
Q 011916 278 LRVSSDYICKLAG--HK-------SEVCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQPTLRLTEHT----------- 334 (475)
Q Consensus 278 ~~~~~~~~~~~~~--h~-------~~V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~~~~h~----------- 334 (475)
.+ .++.+-.+.. |. .+.....+..+|+ .++.++.+|.++++|..+++.+.......
T Consensus 277 ~~-tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~ 355 (668)
T 1kv9_A 277 PD-TGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (668)
T ss_dssp TT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred CC-CCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccccc
Confidence 88 4444443332 22 2333333333665 68889999999999999999875433211
Q ss_pred -cce------------------------eEEEECCCCCcEEEEe---------------------------------cCC
Q 011916 335 -AAV------------------------KAIAWSPHQSSLLASG---------------------------------GGT 356 (475)
Q Consensus 335 -~~v------------------------~~l~~sp~~~~ll~sg---------------------------------~Gs 356 (475)
.++ ..++++|+...+++.. ...
T Consensus 356 g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~ 435 (668)
T 1kv9_A 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (668)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred CCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCC
Confidence 000 1256777766444311 011
Q ss_pred CCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcce-EEEEECCCCC
Q 011916 357 ADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV-LYLATSPDGQ 435 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~ 435 (475)
.++.|..||+.+|+.+.............+...+..+++ +..++.|+.||..+++.+..++...... .-+.+..+|+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~--g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~ 513 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEE--ECCcccchhhhhhcChhheEecCCCCcccCceEEEECCE
Confidence 348899999999999988876666555566667888888 7889999999999999998887543211 1233345666
Q ss_pred -EEEEEeC--------------------CCCEEEEecCCC
Q 011916 436 -TIVTGAG--------------------DETLRFWNVFPS 454 (475)
Q Consensus 436 -~l~s~s~--------------------Dg~I~iW~~~~~ 454 (475)
+++.++. .+.|.++.+...
T Consensus 514 ~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~ 553 (668)
T 1kv9_A 514 QYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGK 553 (668)
T ss_dssp EEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCC
T ss_pred EEEEEEecCCCccccccccccccccCCCCCeEEEEEcCcc
Confidence 4554443 347888887653
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-07 Score=101.08 Aligned_cols=276 Identities=9% Similarity=0.043 Sum_probs=177.4
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCC---------cE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGD---------SV-CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~---------~V-~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.+++++.++.|+-+|..+|+..=..+..... .+ ..+.. .+..+++++.||.|..+|..+++.+..+.
T Consensus 67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~~ 144 (668)
T 1kv9_A 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (668)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeeec
Confidence 45667777889999999999976655432110 00 11222 35678889999999999999999988776
Q ss_pred CCC----CceE-EEEeCCCEEEEEeC------CCcEEEEECCCCCccEEEecCc--------------------------
Q 011916 249 GHQ----TRAG-VLAWNSRILSSGSR------DRNILQHDLRVSSDYICKLAGH-------------------------- 291 (475)
Q Consensus 249 ~h~----~~v~-~l~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~~h-------------------------- 291 (475)
... ..+. .....+..++++.. +|.|..+|.++ ++.+-.+...
T Consensus 145 ~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~t-G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 145 TTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADT-GKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp CSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred cCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCC-CcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 421 1111 11123445555543 58999999984 4444333210
Q ss_pred -----cCCEEEEEEcCCCCEEEEEeCCC-------------------cEEEEECCCCceeEEEec--cc-------ccee
Q 011916 292 -----KSEVCGLKWSHDDRELASGGNDN-------------------QLLVWNQHSQQPTLRLTE--HT-------AAVK 338 (475)
Q Consensus 292 -----~~~V~~l~~s~~~~~lasg~~Dg-------------------~I~iwd~~~~~~~~~~~~--h~-------~~v~ 338 (475)
......+++.++...++.+..++ .|..+|.++++.+..+.. |. .+..
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 01112467888888888887765 399999999999887764 22 2222
Q ss_pred EEEECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC-------------C-----------------------
Q 011916 339 AIAWSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGS-------------Q----------------------- 380 (475)
Q Consensus 339 ~l~~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~-------------~----------------------- 380 (475)
...+..+++ .+++.+ +.+|.++++|..+|+.+....... +
T Consensus 304 ~~d~~~~G~~~~~v~~~--~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQA--PKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred EEEeccCCcEEEEEEEE--CCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 222223454 245554 489999999999999884432111 0
Q ss_pred -eeEEEEcCCCCeEEEEEe----------------------------------cCCCeEEEEECCCCceEEEecCCCcce
Q 011916 381 -VCNLAWSKNVNELVSTHG----------------------------------YSQNQIMVWKYPSMAKVSTLTGHSLRV 425 (475)
Q Consensus 381 -v~~l~~s~~~~~l~~~~g----------------------------------~~dg~I~iwd~~~~~~~~~l~~h~~~V 425 (475)
-..++++|+...+++... ..+|.|..||..+++.+-....+. .+
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~ 460 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HW 460 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SC
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CC
Confidence 012677777776665211 123789999999999887765432 23
Q ss_pred EEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 426 LYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
....+...+.+++.++.|+.|+.||..+++.....
T Consensus 461 ~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 461 NGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 33334446778999999999999999988876544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.98 E-value=4e-07 Score=83.01 Aligned_cols=194 Identities=10% Similarity=0.034 Sum_probs=138.4
Q ss_pred CCceeccCCCCCCCCceeEEecCCCCEEEEEcC---CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCC
Q 011916 155 TPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLG---TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNL 230 (475)
Q Consensus 155 ~p~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~---~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~d 230 (475)
..+.++..--+....|..-+.|+++.++.++.. +.|..+|+.++++.....+.....-..+++ +++.|... -.+
T Consensus 7 ~~~~v~~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~--~~~~ly~ltw~~ 84 (243)
T 3mbr_X 7 QGYRVVKRYPHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA--WRDRLIQLTWRN 84 (243)
T ss_dssp CCEEEEEEEECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSS
T ss_pred cceEEEEEcCCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE--eCCEEEEEEeeC
Confidence 345555544455667788899988766555443 489999999999999887654322233444 34555544 457
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc-----CCEEEEEEcCCCC
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK-----SEVCGLKWSHDDR 305 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~s~~~~ 305 (475)
+.+.+||..+.+.+.++.... .-..+++++..|+.+..++.|.++|.. ..+.+..+.-.. ..+..+.|. +|+
T Consensus 85 ~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdgs~~l~~iDp~-t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 85 HEGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDGTAVIRKLDPD-TLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp SEEEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred CEEEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECCCCeEEEEeCC-CCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 899999999999999987433 346788888777777778999999988 444444443221 345677775 676
Q ss_pred EEEEEeCCCcEEEEECCCCceeEEEecc-------------ccceeEEEECCCCCcEEEEe
Q 011916 306 ELASGGNDNQLLVWNQHSQQPTLRLTEH-------------TAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~ll~sg 353 (475)
..+..-.++.|.+.|.++++.+..+.-. ....+.|||+|+++.|+++|
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6666656889999999999988776522 13458999999999999987
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=6.4e-07 Score=86.06 Aligned_cols=236 Identities=10% Similarity=-0.007 Sum_probs=151.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC-------------------CCCceEEEEeC--CCEEEEEeC
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG-------------------HQTRAGVLAWN--SRILSSGSR 269 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~-------------------h~~~v~~l~~~--~~~l~sgs~ 269 (475)
...+++|.++|++++++..++.|..|+..+++....... .......++++ ...|+.+..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~ 99 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC 99 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence 345788999999888899999999999876544321110 01246788886 456777766
Q ss_pred CCcEEEEECCCCCccEEEecC-----ccCCEEEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCce
Q 011916 270 DRNILQHDLRVSSDYICKLAG-----HKSEVCGLKWSH-DDRELASGGN-----------------DNQLLVWNQHSQQP 326 (475)
Q Consensus 270 dg~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~s~-~~~~lasg~~-----------------Dg~I~iwd~~~~~~ 326 (475)
.+.|..+|.. .+. +..+.. .......+++.+ +|++.++-.. ++.|..||..+++.
T Consensus 100 ~~~i~~~d~~-~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 100 YYHLSVVGSE-GGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTEEEEECTT-CEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCEEEEeCC-CCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 6668888865 222 222211 113478899999 9987666432 36789999877654
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc--eeeee-cCCCCeeEEEEcCCCCeEEEEEe-----
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH--QLNSV-DTGSQVCNLAWSKNVNELVSTHG----- 398 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~--~~~~~-~~~~~v~~l~~s~~~~~l~~~~g----- 398 (475)
.... ..-.....|+|+|+++.|+++.. ..+.|..|++.... ....+ ...+ ...+++.++|+.+++..+
T Consensus 178 ~~~~-~~~~~p~gia~~~dg~~lyv~d~--~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~ 253 (322)
T 2fp8_A 178 TLLL-KELHVPGGAEVSADSSFVLVAEF--LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGN 253 (322)
T ss_dssp EEEE-EEESCCCEEEECTTSSEEEEEEG--GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred EEec-cCCccCcceEECCCCCEEEEEeC--CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence 3222 22234578999999997777754 57899999987531 11111 2233 788999999987666422
Q ss_pred ---cCCCeEEEEECCCCceEEEecCCC----cceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 399 ---YSQNQIMVWKYPSMAKVSTLTGHS----LRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 399 ---~~dg~I~iwd~~~~~~~~~l~~h~----~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
...+.|..+|. .++.+..+.... ..+..+++ .+++++++....+.|..+++...
T Consensus 254 ~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 254 MHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp TTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred ccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 11466888886 477666665432 34666766 46666666666788999987643
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.2e-07 Score=95.76 Aligned_cols=278 Identities=7% Similarity=-0.018 Sum_probs=171.3
Q ss_pred CCEEEEEc-CCeEEEEEC-CCCcEEEEeeCCCCC----------cEEEEEEcCCCCE----EEEEeCCCeEEEEECCCCe
Q 011916 179 QNVLAVGL-GTCVYLWTA-SNSKVTRLCDLGPGD----------SVCSVQWTREGSY----ISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 179 ~~~la~~~-~~~V~lw~~-~~~~~~~~~~~~~~~----------~V~~v~~spdg~~----la~g~~dg~v~iwd~~~~~ 242 (475)
+.+++++. ++.|+-+|. .+++..=..+..... ....++++|.+.. |++++.|+.|..+|..+++
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGE 142 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCC
Confidence 44555555 688999999 898876555432211 0123455444444 8889999999999999999
Q ss_pred eeEEecCCCC----ceE-EEEeCCCEEEEEe------CCCcEEEEECCCCCccEEEecCccCC-----------------
Q 011916 243 RVRTFGGHQT----RAG-VLAWNSRILSSGS------RDRNILQHDLRVSSDYICKLAGHKSE----------------- 294 (475)
Q Consensus 243 ~~~~~~~h~~----~v~-~l~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h~~~----------------- 294 (475)
.+........ .+. .....+..+++++ .++.|..+|.++ ++.+-.+......
T Consensus 143 ~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~T-G~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 143 TVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKT-GEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTT-CCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCC-CcEEEEEcCCCCcccccccccccccccccc
Confidence 9877653220 111 1111234555554 389999999984 4444333221100
Q ss_pred --------------------E-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCceeEEEecccc--
Q 011916 295 --------------------V-CGLKWSHDDRELASGGND----------------NQLLVWNQHSQQPTLRLTEHTA-- 335 (475)
Q Consensus 295 --------------------V-~~l~~s~~~~~lasg~~D----------------g~I~iwd~~~~~~~~~~~~h~~-- 335 (475)
+ ..+++.++...++.+..+ +.|..+|.++++.+..+.....
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 0 134556667777777654 3799999999999887764221
Q ss_pred -------ceeEEEEC-CCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC--------------Ce----------
Q 011916 336 -------AVKAIAWS-PHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGS--------------QV---------- 381 (475)
Q Consensus 336 -------~v~~l~~s-p~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~--------------~v---------- 381 (475)
...-+... .+|+ .+++.+. .+|.++++|..+|+.+....... ++
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~ 379 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMD 379 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTT
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEEC--CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCC
Confidence 11112222 4563 3555544 89999999999999887654221 01
Q ss_pred ----------------eEEEEcCCCCeEEEEEe-------------------------------c------CCCeEEEEE
Q 011916 382 ----------------CNLAWSKNVNELVSTHG-------------------------------Y------SQNQIMVWK 408 (475)
Q Consensus 382 ----------------~~l~~s~~~~~l~~~~g-------------------------------~------~dg~I~iwd 408 (475)
..++++|+...+++... . ..|.|..||
T Consensus 380 ~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D 459 (599)
T 1w6s_A 380 HLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYN 459 (599)
T ss_dssp CCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEEC
T ss_pred CCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEE
Confidence 23567777666654210 1 347899999
Q ss_pred CCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 409 YPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 409 ~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
+.+++.+-+.... .++..-.+...+..++.++.|+.|+.||..+++.....
T Consensus 460 ~~tG~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 460 AITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp TTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 9999887766421 11211112225667888999999999999998876554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-07 Score=95.39 Aligned_cols=195 Identities=9% Similarity=0.059 Sum_probs=142.3
Q ss_pred EEEEe-----CCCEEEEEe-CCCcEEEEECCCCCccEEEec-CccCCEEEEEE-c-CCCCEEEEEe--------------
Q 011916 255 GVLAW-----NSRILSSGS-RDRNILQHDLRVSSDYICKLA-GHKSEVCGLKW-S-HDDRELASGG-------------- 311 (475)
Q Consensus 255 ~~l~~-----~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~-s-~~~~~lasg~-------------- 311 (475)
..+++ +|++|+... .+..|.+.|+. ..+....+. .....+.++++ + |+++++++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~-t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~ 168 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCD-VMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNME 168 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETT-TTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTT
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECC-CceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccc
Confidence 35555 456666655 45679999998 445444332 23356889998 5 8999998885
Q ss_pred ----CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC-----------------------------
Q 011916 312 ----NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD----------------------------- 358 (475)
Q Consensus 312 ----~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d----------------------------- 358 (475)
.++.+.++|..+.+.+.++.-.. ....++++|+|+++++++..+..
T Consensus 169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 24579999999998887776433 45788999999999988753211
Q ss_pred ------CeEEEEECCC--Cce-eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------------eEEE
Q 011916 359 ------RCIRFWNTSN--GHQ-LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA------------KVST 417 (475)
Q Consensus 359 ------~~I~iwd~~~--~~~-~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------------~~~~ 417 (475)
+.|.+.|..+ ++. +..+..+....++.++|||++++++ +..++.|.++|+.+.+ .+.+
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~-~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~ 326 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA-GKLSPTVTVLDVTRFDAVFYENADPRSAVVAE 326 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEE-CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEEC
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEe-CCCCCeEEEEECcccccccccccCcccceEEE
Confidence 2477888887 555 5677777778899999999999986 6678999999998653 3344
Q ss_pred ecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 418 LTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 418 l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
+. -......++|++||...++.-.|+.|.+||+..
T Consensus 327 v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 327 PE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred cC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 43 234578999999994444556699999999976
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-06 Score=80.90 Aligned_cols=233 Identities=9% Similarity=0.049 Sum_probs=144.7
Q ss_pred CCEEEEEeCCCeEEEEECCCCeee-----EEecCCCCceEEEEeC--CCEE-EEEeCCCcEEEEECCCCCccEEEecCcc
Q 011916 221 GSYISVGTNLGQVQVWDGTQCKRV-----RTFGGHQTRAGVLAWN--SRIL-SSGSRDRNILQHDLRVSSDYICKLAGHK 292 (475)
Q Consensus 221 g~~la~g~~dg~v~iwd~~~~~~~-----~~~~~h~~~v~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~ 292 (475)
|.+|+.+.. +.|+.+++...... ..+......+..++|+ +..| ++-..++.|..+++.. ...........
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~ 78 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDL 78 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTC
T ss_pred CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCC-CCcEEEEECCC
Confidence 345666554 47888887654321 1122222356788885 3444 4555678999999873 33333333333
Q ss_pred CCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce
Q 011916 293 SEVCGLKWSHDDRELASG-GNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ 371 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg-~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~ 371 (475)
....++++++++..|+.+ ...+.|.++++..................++++|++..|+++..+...+.|..+++....
T Consensus 79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~- 157 (267)
T 1npe_A 79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN- 157 (267)
T ss_dssp CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-
T ss_pred CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-
Confidence 568999999976655554 456789999987543322222222467899999987777777542225789888876433
Q ss_pred eeee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEe-CCCCEEE
Q 011916 372 LNSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA-GDETLRF 448 (475)
Q Consensus 372 ~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~i 448 (475)
...+ ........++++++++.|+++ ....+.|.++|+........+.+ ......++.. +..|+.+. ..+.|..
T Consensus 158 ~~~~~~~~~~~P~gia~d~~~~~lyv~-d~~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~ 233 (267)
T 1npe_A 158 RRILAQDNLGLPNGLTFDAFSSQLCWV-DAGTHRAECLNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIA 233 (267)
T ss_dssp CEEEECTTCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred cEEEEECCCCCCcEEEEcCCCCEEEEE-ECCCCEEEEEecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEE
Confidence 2222 223467899999998888775 45678999999976544333332 2334567664 44555444 5688999
Q ss_pred EecCCCCCCCCc
Q 011916 449 WNVFPSLKAPAL 460 (475)
Q Consensus 449 W~~~~~~~~~~~ 460 (475)
++..++.....+
T Consensus 234 ~d~~~g~~~~~i 245 (267)
T 1npe_A 234 MDLAISKEMDTF 245 (267)
T ss_dssp EETTTTEEEEEE
T ss_pred EeCCCCCceEEE
Confidence 998877654443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-07 Score=83.35 Aligned_cols=188 Identities=13% Similarity=0.137 Sum_probs=131.2
Q ss_pred EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEecCCCCc-eEEEEeCCCEE-EEEeCCCcEEE
Q 011916 200 VTRLCDLGPGDSVCSVQWTREGSYISVGTNLG--QVQVWDGTQCKRVRTFGGHQTR-AGVLAWNSRIL-SSGSRDRNILQ 275 (475)
Q Consensus 200 ~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg--~v~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~l-~sgs~dg~I~i 275 (475)
++..+..+.......+.|+ ++.++.+.+.+| .|+++|+++++.+..+...... .-.++..++.| +....++.+.+
T Consensus 33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 3445543444566899998 666556666655 8999999999999888644332 23466655444 44556899999
Q ss_pred EECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc--c---cceeEEEECCCCCcEE
Q 011916 276 HDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH--T---AAVKAIAWSPHQSSLL 350 (475)
Q Consensus 276 wd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h--~---~~v~~l~~sp~~~~ll 350 (475)
+|.. ..+.+..+.... +=.++ ++|++.|+.+..++.|.++|..+.+.+..+.-. . ..++.+.|. +|. ++
T Consensus 112 ~D~~-t~~~~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-ly 185 (262)
T 3nol_A 112 WNIR-NLRQVRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE-IF 185 (262)
T ss_dssp EETT-TCCEEEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE-EE
T ss_pred EECc-cCcEEEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE-EE
Confidence 9998 555666655322 11233 356777777666789999999998887776542 1 234557776 565 66
Q ss_pred EEecCCCCCeEEEEECCCCceeeeecCC-------------CCeeEEEEcCCCCeEEEE
Q 011916 351 ASGGGTADRCIRFWNTSNGHQLNSVDTG-------------SQVCNLAWSKNVNELVST 396 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-------------~~v~~l~~s~~~~~l~~~ 396 (475)
+..- .++.|.+.|..+|+.+..++.. .-...|+|+|+++.|+++
T Consensus 186 an~w--~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT 242 (262)
T 3nol_A 186 ANVW--QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT 242 (262)
T ss_dssp EEET--TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred EEEc--cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence 6553 6889999999999999888642 245889999999988885
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-07 Score=84.61 Aligned_cols=190 Identities=9% Similarity=0.042 Sum_probs=134.9
Q ss_pred eeccCCCCCCCCceeEEecCCCCEEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEE
Q 011916 158 KVLDAPSLQDDFYLNLVDWSSQNVLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQV 235 (475)
Q Consensus 158 ~~l~~p~~~~d~~v~~l~ws~~~~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~i 235 (475)
.++..-.+...-|...+.++.+.++.++ .++.|.++|++++++.... +.....-..+++ +++.|... -.++.+.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLAS--DGERLYQLTWTEGLLFT 120 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEE--CSSCEEEEESSSCEEEE
T ss_pred EEEEEEcCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEE--eCCEEEEEEccCCEEEE
Confidence 4444333444556778888877655544 4678999999999988877 554322334554 44444444 45789999
Q ss_pred EECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCcc-----CCEEEEEEcCCCCEEEEE
Q 011916 236 WDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHK-----SEVCGLKWSHDDRELASG 310 (475)
Q Consensus 236 wd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~-----~~V~~l~~s~~~~~lasg 310 (475)
||.++.+.+.++... ..-..+++++..|+.+..++.|.++|.. ..+.+..+.-.. ..+..+.|. +|...+..
T Consensus 121 ~D~~Tl~~~~ti~~~-~eGwGLt~Dg~~L~vSdGs~~l~~iDp~-T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv 197 (268)
T 3nok_A 121 WSGMPPQRERTTRYS-GEGWGLCYWNGKLVRSDGGTMLTFHEPD-GFALVGAVQVKLRGQPVELINELECA-NGVIYANI 197 (268)
T ss_dssp EETTTTEEEEEEECS-SCCCCEEEETTEEEEECSSSEEEEECTT-TCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred EECCcCcEEEEEeCC-CceeEEecCCCEEEEECCCCEEEEEcCC-CCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence 999999999998853 3346778888888888889999999987 444444443211 245677887 77666555
Q ss_pred eCCCcEEEEECCCCceeEEEecc-------------ccceeEEEECCCCCcEEEEe
Q 011916 311 GNDNQLLVWNQHSQQPTLRLTEH-------------TAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 311 ~~Dg~I~iwd~~~~~~~~~~~~h-------------~~~v~~l~~sp~~~~ll~sg 353 (475)
-.++.|.+.|.++++.+..+... ....+.|||.|+++.|+++|
T Consensus 198 w~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 198 WHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp TTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred CCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 57889999999999988776532 13568999999999999987
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-05 Score=87.55 Aligned_cols=269 Identities=12% Similarity=0.097 Sum_probs=180.7
Q ss_pred CceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCC------CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Q 011916 169 FYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLG------PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC 241 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~------~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~ 241 (475)
..+.++....+ .+.+++.+ .|.+|+..+++........ ....|.++...++|. |.+|+.++-|..|+..+.
T Consensus 263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~ 340 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRN 340 (795)
T ss_dssp SBEEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGG
T ss_pred CeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcc
Confidence 45777777765 56655555 7999999888766553211 236799999998887 677888778999986654
Q ss_pred eeeEEec------CCCCceEEEEeCC-CEEEEEeCCCcEEEEECCCCCccEEEec--------CccCCEEEEEEcCCCCE
Q 011916 242 KRVRTFG------GHQTRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDYICKLA--------GHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 242 ~~~~~~~------~h~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~--------~h~~~V~~l~~s~~~~~ 306 (475)
....... -....|.++..+. ..|..|+.++-|..||... ........ .....|.++...++++.
T Consensus 341 ~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~ 419 (795)
T 4a2l_A 341 RFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-QRFTSYTLQEDESARGIGSNNIKAVYVDEKKSL 419 (795)
T ss_dssp SSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-CCEEEECCC------CCSCSCEEEEEEETTTTE
T ss_pred cceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-CcEEEEecCCCCcccCCCCccEEEEEEcCCCCE
Confidence 3322111 1245688998863 5677888888899998863 22222111 12357999999888885
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEec-----cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLTE-----HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD----- 376 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~----- 376 (475)
|..|+.++-|.+||..+++.. .+.. ....|.++...+++...+.+ . +-|.+||..+++......
T Consensus 420 lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt----~-~Gl~~~~~~~~~~~~~~~~~~~~ 493 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGT----L-SALVRFNPEQRSFTTIEKEKDGT 493 (795)
T ss_dssp EEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEE----S-SCEEEEETTTTEEEECCBCTTCC
T ss_pred EEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEe----c-CceeEEeCCCCeEEEcccccccc
Confidence 777887778999999877543 3321 34578999998888744443 3 458899988765443221
Q ss_pred --CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-------CCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 377 --TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-------GHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 377 --~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
....|.++...++|...+. . . +.|..||..+.+. .+. .....|.++...++|.+.++.. . -|.
T Consensus 494 ~~~~~~i~~i~~d~~g~lWig--t-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~ 565 (795)
T 4a2l_A 494 PVVSKQITTLFRDSHKRLWIG--G-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFY 565 (795)
T ss_dssp BCCCCCEEEEEECTTCCEEEE--E-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEE
T ss_pred ccCCceEEEEEECCCCCEEEE--e-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-Cce
Confidence 1256889999988887775 2 3 5688898876654 332 1345689999999998666443 3 577
Q ss_pred EEecCCC
Q 011916 448 FWNVFPS 454 (475)
Q Consensus 448 iW~~~~~ 454 (475)
.||....
T Consensus 566 ~~d~~~~ 572 (795)
T 4a2l_A 566 CFNEKDK 572 (795)
T ss_dssp EEETTTT
T ss_pred eECCCCC
Confidence 7776543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.7e-06 Score=80.17 Aligned_cols=226 Identities=8% Similarity=0.007 Sum_probs=140.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCC--cEEEEECCCCCcc
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDR--NILQHDLRVSSDY 284 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg--~I~iwd~~~~~~~ 284 (475)
......++|+++|+++++-..++.|..||.... ....+. .......++++ ++++++..... .|..+|.. .+..
T Consensus 31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~ 107 (306)
T 2p4o_A 31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTV 107 (306)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCE
T ss_pred CCCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeE
Confidence 356789999999997777667899999997753 333332 23467888884 56555544332 46666765 3332
Q ss_pred EEEec-CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEec---------cccceeEEEECCCCCcEEEEe
Q 011916 285 ICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP-TLRLTE---------HTAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 285 ~~~~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~-~~~~~~---------h~~~v~~l~~sp~~~~ll~sg 353 (475)
..... ........++..+++..+++-..++.|+++|...++. +..... .-.....| +|++..|+++.
T Consensus 108 ~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 108 ETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 22111 1223345566555554455544688999999876431 211110 11234455 78888888876
Q ss_pred cCCCCCeEEEEECCC-Cce--eeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE--EecCCCcceEEE
Q 011916 354 GGTADRCIRFWNTSN-GHQ--LNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS--TLTGHSLRVLYL 428 (475)
Q Consensus 354 ~Gs~d~~I~iwd~~~-~~~--~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~--~l~~h~~~V~~l 428 (475)
. ..+.|..|++.. ++. ...+........+++.++|+.+++ ....+.|.+++.. ++... .+.......+++
T Consensus 186 ~--~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va--~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~ 260 (306)
T 2p4o_A 186 T--EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAV 260 (306)
T ss_dssp T--TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTT-CCEEEEECGGGTCTTEEEE
T ss_pred C--CCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEE--eCCCCeEEEECCC-CCEEEEeecccccCCceEE
Confidence 5 788999999875 332 112222245678999999987666 5567889999965 55432 233333568999
Q ss_pred EEC---CCCCEEEEEeCCC
Q 011916 429 ATS---PDGQTIVTGAGDE 444 (475)
Q Consensus 429 ~~s---pdg~~l~s~s~Dg 444 (475)
+|. +|+..|+.++..+
T Consensus 261 a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp EECCSTTTTTEEEEEECTT
T ss_pred EEecccCCCCEEEEECCCC
Confidence 998 8987777666543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=7.5e-07 Score=92.87 Aligned_cols=277 Identities=12% Similarity=0.065 Sum_probs=169.7
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcE--------EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCC
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSV--------CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V--------~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h 250 (475)
+.+++++..+.|+-+|..+|+..=.......... ..++. .+..+++++.++.|..+|..+++.+......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4555666645699999999987655554221110 11222 3567888999999999999999998776533
Q ss_pred CC----ceE-E-EEeCC----C-EEEEEe------CCCcEEEEECCCCCccEEEecCccCC-------------------
Q 011916 251 QT----RAG-V-LAWNS----R-ILSSGS------RDRNILQHDLRVSSDYICKLAGHKSE------------------- 294 (475)
Q Consensus 251 ~~----~v~-~-l~~~~----~-~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h~~~------------------- 294 (475)
.. .+. . +..++ + .+++++ .++.|..+|.++ ++.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~t-G~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~ 225 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT-GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT-CCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCC-CCEEeecCCCccccccccCccccccccccccc
Confidence 21 111 1 11222 2 566654 378999999884 4333322211000
Q ss_pred ----------------------EEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCceeE
Q 011916 295 ----------------------VCGLKWSHDDRELASGGN--------------------D----NQLLVWNQHSQQPTL 328 (475)
Q Consensus 295 ----------------------V~~l~~s~~~~~lasg~~--------------------D----g~I~iwd~~~~~~~~ 328 (475)
-..+++.++...++.+.. | +.|..+|..+++.+.
T Consensus 226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W 305 (582)
T 1flg_A 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence 012456666677776653 2 589999999999988
Q ss_pred EEec--ccc----ceeE-EEEC---CCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCCCe---------------
Q 011916 329 RLTE--HTA----AVKA-IAWS---PHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQV--------------- 381 (475)
Q Consensus 329 ~~~~--h~~----~v~~-l~~s---p~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v--------------- 381 (475)
.+.. |.. .+.. +.+. .+|+ .+++.++ .+|.++++|..+|+.+..+.....+
T Consensus 306 ~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~ 383 (582)
T 1flg_A 306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD--RNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE 383 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred EEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC--CCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence 7753 321 1111 1122 4564 3555544 8999999999999988766433200
Q ss_pred -------------------------------eEEEEcCCCCeEEEEEe-------------------------------c
Q 011916 382 -------------------------------CNLAWSKNVNELVSTHG-------------------------------Y 399 (475)
Q Consensus 382 -------------------------------~~l~~s~~~~~l~~~~g-------------------------------~ 399 (475)
..++++|+...+++... .
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~ 463 (582)
T 1flg_A 384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD 463 (582)
T ss_dssp CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence 13456666666655321 1
Q ss_pred CCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 400 SQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 400 ~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
..|.|..||+.+++.+-+...+. .+..-.....+.+++.++.|+.|+.||..+++......
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CcceEEEEECCCCCEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 25789999999999887665332 22211112246678889999999999999988766543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.3e-06 Score=81.95 Aligned_cols=250 Identities=9% Similarity=-0.007 Sum_probs=159.9
Q ss_pred EEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEecCCC
Q 011916 173 LVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQ 251 (475)
Q Consensus 173 ~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~ 251 (475)
|.+..+...|..+....|+..++.+.....+.. ....+..++|.+.+..|+ +-...+.|..+++........+....
T Consensus 81 C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 158 (386)
T 3v65_B 81 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 158 (386)
T ss_dssp EEECSSCCEEEEECBSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC
T ss_pred ECCccccceeEeecCccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC
Confidence 344445567777778889999998877766653 345688999998655554 54567889999988765444443222
Q ss_pred CceEEEE--eCC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-C-CcEEEEECCCCce
Q 011916 252 TRAGVLA--WNS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-D-NQLLVWNQHSQQP 326 (475)
Q Consensus 252 ~~v~~l~--~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-D-g~I~iwd~~~~~~ 326 (475)
.....++ |.+ .++++-...+.|.+.++.. ......+........+|++.|.+..|+.... . +.|..+++.....
T Consensus 159 ~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg-~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 237 (386)
T 3v65_B 159 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG-AHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 237 (386)
T ss_dssp SCCCCEEEETTTTEEEEEETTTTEEEECBTTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC-CceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc
Confidence 2333444 434 4555656677888888863 2223333334466899999987666665543 3 6788888875443
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
.......-.....|+|+|++..|+.+-. ..+.|..+|+........+. .......+++. .+ .|+.+ ....+.|.
T Consensus 238 ~~~~~~~~~~PnGlavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~-~ly~t-d~~~~~V~ 312 (386)
T 3v65_B 238 RIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWT-DWHTKSIN 312 (386)
T ss_dssp EEEECSSCSCEEEEEEEGGGTEEEEEET--TTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TT-EEEEE-ETTTTEEE
T ss_pred EEEEECCCCCeeeEEEeCCCCEEEEEEC--CCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CC-EEEEe-eCCCCeEE
Confidence 3333333445789999998888888865 67899999987544333332 23456778883 33 44443 56788899
Q ss_pred EEECCCCceEEEecCCCcceEEEEE
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
.++..+++.+..+.........|++
T Consensus 313 ~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 313 SANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EEECCCCcceEEEccCCCCCceEEE
Confidence 9997777666666543333444443
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.7e-07 Score=93.11 Aligned_cols=256 Identities=11% Similarity=0.046 Sum_probs=160.9
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCC---CcEEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEe
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPG---DSVCS-VQWTREGSYISVGTN------LGQVQVWDGTQCKRVRTF 247 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~---~~V~~-v~~spdg~~la~g~~------dg~v~iwd~~~~~~~~~~ 247 (475)
.+.+++++.++.|+.+|..+++..-....... ..+.+ ... .+..+++++. +|.|..+|..+++.+..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v--~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 192 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV--AKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRA 192 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE--ETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE--ECCEEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence 44566666789999999999998766554220 11211 111 2345666665 799999999999998876
Q ss_pred cCCCCc-------------------------------------e-EEEEeC--CCEEEEEeCC----------------C
Q 011916 248 GGHQTR-------------------------------------A-GVLAWN--SRILSSGSRD----------------R 271 (475)
Q Consensus 248 ~~h~~~-------------------------------------v-~~l~~~--~~~l~sgs~d----------------g 271 (475)
...... + ..++++ ...++.+..+ +
T Consensus 193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~ 272 (571)
T 2ad6_A 193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM 272 (571)
T ss_dssp ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence 532111 0 123343 3566665532 3
Q ss_pred cEEEEECCCCCccEEEec--Ccc--------CCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeccc----
Q 011916 272 NILQHDLRVSSDYICKLA--GHK--------SEVCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQPTLRLTEHT---- 334 (475)
Q Consensus 272 ~I~iwd~~~~~~~~~~~~--~h~--------~~V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~~~~h~---- 334 (475)
.|..+|.++ ++.+-.+. .|. ..+. +....+|+ .++.++.+|.++++|..+++.+..+....
T Consensus 273 ~v~Ald~~t-G~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w 350 (571)
T 2ad6_A 273 TIWGRDLDT-GMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNV 350 (571)
T ss_dssp EEEEEETTT-CCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred EEEEEecCC-CcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccc
Confidence 588899884 44443332 221 2222 22224674 57788899999999999999877654321
Q ss_pred ---------cce--------------------------eEEEECCCCCcEEEEec---------------C---------
Q 011916 335 ---------AAV--------------------------KAIAWSPHQSSLLASGG---------------G--------- 355 (475)
Q Consensus 335 ---------~~v--------------------------~~l~~sp~~~~ll~sg~---------------G--------- 355 (475)
.++ ..++++|+...+++... |
T Consensus 351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 430 (571)
T 2ad6_A 351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence 111 23577777775555421 0
Q ss_pred ----------CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc-
Q 011916 356 ----------TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR- 424 (475)
Q Consensus 356 ----------s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~- 424 (475)
..++.|..||+.+++.+..+.....+....+...+..+++ +..++.|+.||..+++.+.++......
T Consensus 431 ~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v~~--g~~dg~l~a~D~~tG~~lw~~~~~~~~~ 508 (571)
T 2ad6_A 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKELWNFKMPSGGI 508 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred eccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEEEE--EcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence 1358999999999999988876655544444455677777 778999999999999999888743221
Q ss_pred eEEEEECCCCCEEEE
Q 011916 425 VLYLATSPDGQTIVT 439 (475)
Q Consensus 425 V~~l~~spdg~~l~s 439 (475)
-.-+.+..+|+.++.
T Consensus 509 ~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 509 GSPMTYSFKGKQYIG 523 (571)
T ss_dssp SCCEEEEETTEEEEE
T ss_pred eeeEEEEECCEEEEE
Confidence 122335567765443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.6e-07 Score=83.31 Aligned_cols=193 Identities=16% Similarity=0.151 Sum_probs=135.8
Q ss_pred CceeccCCCCCCCCceeEEecCCCCEEEE-EcCC--eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCC
Q 011916 156 PHKVLDAPSLQDDFYLNLVDWSSQNVLAV-GLGT--CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLG 231 (475)
Q Consensus 156 p~~~l~~p~~~~d~~v~~l~ws~~~~la~-~~~~--~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg 231 (475)
.+.++..-.+...-|...+.|+.+.++.+ |..+ .|+.+|+.++++.....+....--..+.. +++.|...+ .++
T Consensus 30 ~~~vv~~~phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~ 107 (262)
T 3nol_A 30 DYQIVHSYPHDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEEEECCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSS
T ss_pred ceEEEEEecCCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCC
Confidence 44555544444556778888886544444 4444 89999999999999887653322233444 455666655 478
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCc----c-CCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGH----K-SEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h----~-~~V~~l~~s~~~~~ 306 (475)
.+.+||.++.+.+.++.... .-..+++++..|+.+..++.|.++|.. ..+.+..+.-. . ..+..+.|. +|..
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~-eG~glt~dg~~L~~SdGs~~i~~iDp~-T~~v~~~I~V~~~g~~~~~lNELe~~-~G~l 184 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG-EGWGLTHNDQYLIMSDGTPVLRFLDPE-SLTPVRTITVTAHGEELPELNELEWV-DGEI 184 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS-CCCCEEECSSCEEECCSSSEEEEECTT-TCSEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEEEECccCcEEEEEECCC-CceEEecCCCEEEEECCCCeEEEEcCC-CCeEEEEEEeccCCccccccceeEEE-CCEE
Confidence 99999999999999987533 335777888777777778889999987 34444443321 1 335567776 7766
Q ss_pred EEEEeCCCcEEEEECCCCceeEEEecc------------ccceeEEEECCCCCcEEEEe
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRLTEH------------TAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~~~h------------~~~v~~l~~sp~~~~ll~sg 353 (475)
.+..-.++.|.+.|.++++.+..+... ....+.|||+|+++.|+++|
T Consensus 185 yan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 185 FANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 666657889999999999988777542 13458999999999999987
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.87 E-value=8.6e-06 Score=79.26 Aligned_cols=239 Identities=8% Similarity=-0.013 Sum_probs=153.7
Q ss_pred EEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEecCCC
Q 011916 173 LVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQ 251 (475)
Q Consensus 173 ~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~ 251 (475)
|.+..++..+..+..+.|+..++.......+.. ....+..++|.+.+..|+ +-...+.|..+++........+....
T Consensus 38 C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~ 115 (349)
T 3v64_C 38 CKALGPEPVLLFANRIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL 115 (349)
T ss_dssp EEESSSCCEEEEECBSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC
T ss_pred ccccccCceeEeecccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC
Confidence 444455666777777889999988877666553 345688999998655555 44567889999988765444433222
Q ss_pred CceEEEEe--C-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe-CC-CcEEEEECCCCce
Q 011916 252 TRAGVLAW--N-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG-ND-NQLLVWNQHSQQP 326 (475)
Q Consensus 252 ~~v~~l~~--~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-~D-g~I~iwd~~~~~~ 326 (475)
.....+++ . +.++++-...+.|.+.++... .........-....+|++.|.+..|+... .. +.|..+++.....
T Consensus 116 ~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~ 194 (349)
T 3v64_C 116 ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA-HRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR 194 (349)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC-ceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc
Confidence 33344554 3 455566666788999998733 22333333445688999999666555544 34 7888888875433
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
...+...-.....|+++|++..|+.+-. ..+.|..+|+........+. .......+++. . ..|+.+ ....+.|.
T Consensus 195 ~~~~~~~~~~PnGla~d~~~~~lY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~-~~ly~t-d~~~~~V~ 269 (349)
T 3v64_C 195 RIIADTHLFWPNGLTIDYAGRRMYWVDA--KHHVIERANLDGSHRKAVISQGLPHPFAITVF-E-DSLYWT-DWHTKSIN 269 (349)
T ss_dssp EESCCSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-T-TEEEEE-ETTTTEEE
T ss_pred EEEEECCCCCcceEEEeCCCCEEEEEEC--CCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-C-CEEEEe-cCCCCeEE
Confidence 2222223345789999998888888865 67899999987543333332 23456777773 3 344443 56778888
Q ss_pred EEECCCCceEEEec
Q 011916 406 VWKYPSMAKVSTLT 419 (475)
Q Consensus 406 iwd~~~~~~~~~l~ 419 (475)
.++..+++.+..+.
T Consensus 270 ~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 270 SANKFTGKNQEIIR 283 (349)
T ss_dssp EEETTTCCSCEEEE
T ss_pred EEEccCCCccEEec
Confidence 88876666555554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-05 Score=75.90 Aligned_cols=231 Identities=11% Similarity=-0.058 Sum_probs=146.7
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEECCC----CeeeEEecCCCCceE
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV-GTNLGQVQVWDGTQ----CKRVRTFGGHQTRAG 255 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~-g~~dg~v~iwd~~~----~~~~~~~~~h~~~v~ 255 (475)
+|..+....|+..++.+.+...+. .....+.+++|++++..|+. -..++.|..+++.. ......+...-....
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECCCeEEEEECCCcceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 456677788999999988776665 33567889999986655554 45568999999876 222222332223345
Q ss_pred EEEe--CC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC--CcEEEEECCCCceeEEE
Q 011916 256 VLAW--NS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND--NQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 256 ~l~~--~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D--g~I~iwd~~~~~~~~~~ 330 (475)
.+++ .+ +++++-...+.|.+.++.. ...............++++.|.+..|+.+... +.|...++.........
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g-~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~ 159 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCC-CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence 5555 34 4555556788999999873 22222233334568899999966666555543 68888888643322222
Q ss_pred eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 331 TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
...-.....|++++++..|+.+-. ..+.|..+|+........... ......+++. +..++.+ ....+.|..+
T Consensus 160 ~~~~~~P~gla~d~~~~~lY~~D~--~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~-d~~~~~V~~~ 234 (316)
T 1ijq_A 160 TENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DIINEAIFSA 234 (316)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ETTTTEEEEE
T ss_pred ECCCCCceEEEEeccCCEEEEEEC--CCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEE-ECCCCeEEEE
Confidence 223356789999998888888765 678999999875333222221 2346777774 3455543 5677899999
Q ss_pred ECCCCceEEEec
Q 011916 408 KYPSMAKVSTLT 419 (475)
Q Consensus 408 d~~~~~~~~~l~ 419 (475)
+..+++.+..+.
T Consensus 235 ~~~~g~~~~~i~ 246 (316)
T 1ijq_A 235 NRLTGSDVNLLA 246 (316)
T ss_dssp ETTTCCCCEEEE
T ss_pred eCCCCcceEEEe
Confidence 987776655554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.2e-05 Score=87.07 Aligned_cols=270 Identities=8% Similarity=0.021 Sum_probs=175.9
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
+.++....+ .+.+++.++.|+.|+..+++............|.++...++|. |.+|+.++-|.+||..+++.......
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~ 253 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHS 253 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCC
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecC
Confidence 455555544 5666666667999999888766543223356789988877776 55666554589999887665443221
Q ss_pred -------CCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecC--------ccCCEEEEEEcCCCCEEEEEeCC
Q 011916 250 -------HQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAG--------HKSEVCGLKWSHDDRELASGGND 313 (475)
Q Consensus 250 -------h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~--------h~~~V~~l~~s~~~~~lasg~~D 313 (475)
....|.++..+ ...|..|+.+ -|.+||.. ... ...+.. ....|.++...++|. |..|+.+
T Consensus 254 ~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~-~~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~ 329 (795)
T 4a2l_A 254 PSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEG-TDS-FASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYF 329 (795)
T ss_dssp TTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETT-TTE-EEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESS
T ss_pred CCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCC-CCe-EEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECC
Confidence 23568898885 4566667666 58888876 232 222221 235699999988886 4556777
Q ss_pred CcEEEEECCCCceeEEEec-------cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---------C
Q 011916 314 NQLLVWNQHSQQPTLRLTE-------HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---------T 377 (475)
Q Consensus 314 g~I~iwd~~~~~~~~~~~~-------h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---------~ 377 (475)
+-|..|+....... .+.. ....|.++...++|...+. +.++-|..||..++....... .
T Consensus 330 ~Gl~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG----t~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~ 404 (795)
T 4a2l_A 330 GGLNYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIG----TNDGGLNLYNPITQRFTSYTLQEDESARGIG 404 (795)
T ss_dssp SCEEEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEE----ESSSCEEEECTTTCCEEEECCC------CCS
T ss_pred CCeEEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEE----ECCCCeEEEcCCCCcEEEEecCCCCcccCCC
Confidence 77899987654322 2221 2356899999988874433 267789999988776543221 1
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec----CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT----GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~----~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
...|.++...++++.|.+ |..++.|.+||..+++...... .+...|.++...++|.+.+.. .+ -|.+|+...
T Consensus 405 ~~~v~~i~~d~~g~~lWi--gt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~ 480 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYI--GTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQ 480 (795)
T ss_dssp CSCEEEEEEETTTTEEEE--EETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTT
T ss_pred CccEEEEEEcCCCCEEEE--EeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCC
Confidence 356889988888883444 5566779999988765433221 134579999999988866654 44 478888655
Q ss_pred C
Q 011916 454 S 454 (475)
Q Consensus 454 ~ 454 (475)
+
T Consensus 481 ~ 481 (795)
T 4a2l_A 481 R 481 (795)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.1e-06 Score=80.79 Aligned_cols=187 Identities=10% Similarity=0.033 Sum_probs=132.7
Q ss_pred EEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCC-ceEEEEeCC-CEEEEEeCCCcEEEEE
Q 011916 200 VTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT-RAGVLAWNS-RILSSGSRDRNILQHD 277 (475)
Q Consensus 200 ~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~-~v~~l~~~~-~~l~sgs~dg~I~iwd 277 (475)
++..+..........+.|+ ++.++.+.+.+|.|+++|+++++.+..+ -... ..-.++..+ .+.+....++.+.+||
T Consensus 45 Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 45 IIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp EEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEE
T ss_pred EEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEE
Confidence 4455544445666889887 4556666677789999999999988887 2222 223466655 5555666789999999
Q ss_pred CCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc--c---cceeEEEECCCCCcEEEE
Q 011916 278 LRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH--T---AAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 278 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h--~---~~v~~l~~sp~~~~ll~s 352 (475)
.. ..+.+..+... .+-.+++ +|++.|+.+..++.|.++|..+.+.+..+.-. . ..++.+.|. +|. +++.
T Consensus 123 ~~-Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyan 196 (268)
T 3nok_A 123 GM-PPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYAN 196 (268)
T ss_dssp TT-TTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEE
T ss_pred CC-cCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEE
Confidence 98 56666666542 2223444 56788888877899999999999887766532 2 234667777 664 6665
Q ss_pred ecCCCCCeEEEEECCCCceeeeecCC--------------CCeeEEEEcCCCCeEEEE
Q 011916 353 GGGTADRCIRFWNTSNGHQLNSVDTG--------------SQVCNLAWSKNVNELVST 396 (475)
Q Consensus 353 g~Gs~d~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~ 396 (475)
.- .++.|.+.|..+++.+..++.. .-...|+|+|+++.|+++
T Consensus 197 vw--~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT 252 (268)
T 3nok_A 197 IW--HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT 252 (268)
T ss_dssp ET--TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred EC--CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence 53 6889999999999999887532 346889999998888875
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.81 E-value=2.9e-05 Score=76.99 Aligned_cols=245 Identities=12% Similarity=-0.050 Sum_probs=158.6
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCC----eeeEEecCCCC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQVWDGTQC----KRVRTFGGHQT 252 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~iwd~~~~----~~~~~~~~h~~ 252 (475)
+..+|..+....|+..++.......+. .....+..|+|++.+..|+.. ...+.|+.+++... .....+.....
T Consensus 82 ~~~~ll~~~~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~ 159 (400)
T 3p5b_L 82 SIAYLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 159 (400)
T ss_dssp TSCEEEEEETTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCS
T ss_pred ccceeEEeccceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCC
Confidence 345667777889999999888776665 345678999999866555554 45688999998752 23333333334
Q ss_pred ceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCcee
Q 011916 253 RAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN--DNQLLVWNQHSQQPT 327 (475)
Q Consensus 253 ~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~--Dg~I~iwd~~~~~~~ 327 (475)
....++++ ++++++-...+.|.+.++.. ......+........+|++.|.+..|+.... .+.|...++......
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g-~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~ 238 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 238 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTT-CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCC-CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence 45555553 45556666778899998873 3333333334456889999997666665542 368999998755443
Q ss_pred EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeE
Q 011916 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQI 404 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I 404 (475)
..+...-.....|++++++..|+.+-. ..+.|..+|+........+.. -.....+++ ++..|+.+ ....+.|
T Consensus 239 ~~~~~~l~~P~glavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywt-d~~~~~V 313 (400)
T 3p5b_L 239 SLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWT-DIINEAI 313 (400)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEE-ESSSCSE
T ss_pred EEEECCCCceEEEEEEeCCCEEEEEEC--CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEe-cCCCCeE
Confidence 333333356789999998888888754 678999999875443333322 234556766 34455554 4567889
Q ss_pred EEEECCCCceEEEecCCCcceEEEEE
Q 011916 405 MVWKYPSMAKVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 405 ~iwd~~~~~~~~~l~~h~~~V~~l~~ 430 (475)
..+|..+++.+..+.........+..
T Consensus 314 ~~~~~~~G~~~~~i~~~~~~p~~i~v 339 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAENLLSPEDMVL 339 (400)
T ss_dssp EEEESSSCCCCEEEECSCSCEEEEEE
T ss_pred EEEEcCCCCceEEEecCCCCCceEEE
Confidence 99998888777666544444555543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.1e-06 Score=86.65 Aligned_cols=255 Identities=10% Similarity=0.046 Sum_probs=157.7
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCC---CcEEE-EEEcCCCCEEEEEeC------CCeEEEEECCCCeeeEEecCC
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPG---DSVCS-VQWTREGSYISVGTN------LGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~---~~V~~-v~~spdg~~la~g~~------dg~v~iwd~~~~~~~~~~~~h 250 (475)
+++++.++.|+-+|..+|+..-....... ..+.+ ... .++ .+++++. +|.|+.+|..+++.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 77777899999999999998765543220 11211 111 134 5666653 799999999999998776532
Q ss_pred CCc-------------------------------------e-EEEEe--CCCEEEEEeCC----------------CcEE
Q 011916 251 QTR-------------------------------------A-GVLAW--NSRILSSGSRD----------------RNIL 274 (475)
Q Consensus 251 ~~~-------------------------------------v-~~l~~--~~~~l~sgs~d----------------g~I~ 274 (475)
... + ..+++ ...+++.+..+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 211 0 01223 34667777655 3788
Q ss_pred EEECCCCCccEEEecC--cc--------CCEEEEEEc-CCC---CEEEEEeCCCcEEEEECCCCceeEEEeccc------
Q 011916 275 QHDLRVSSDYICKLAG--HK--------SEVCGLKWS-HDD---RELASGGNDNQLLVWNQHSQQPTLRLTEHT------ 334 (475)
Q Consensus 275 iwd~~~~~~~~~~~~~--h~--------~~V~~l~~s-~~~---~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~------ 334 (475)
.+|.++ ++.+-.++. |. ..+. +... .+| ..++.++.+|.++++|.++++.+.......
T Consensus 282 Ald~~T-G~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~ 359 (599)
T 1w6s_A 282 GRDADT-GEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFK 359 (599)
T ss_dssp EEETTT-CCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred EEeCCC-CceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccc
Confidence 899984 444433332 21 1222 2222 467 467778999999999999999887654211
Q ss_pred -------cce--------------------------eEEEECCCCCcEEEEec---------------------------
Q 011916 335 -------AAV--------------------------KAIAWSPHQSSLLASGG--------------------------- 354 (475)
Q Consensus 335 -------~~v--------------------------~~l~~sp~~~~ll~sg~--------------------------- 354 (475)
.++ ..++++|+...+++...
T Consensus 360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~ 439 (599)
T 1w6s_A 360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY 439 (599)
T ss_dssp EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceec
Confidence 011 23566666554433210
Q ss_pred ---CC------CCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcce
Q 011916 355 ---GT------ADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV 425 (475)
Q Consensus 355 ---Gs------~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V 425 (475)
.. .++.|..||+.+++.+.......+...-.....+..+++ +..|+.|+.||..+++.+.+++.....+
T Consensus 440 ~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~--gt~dg~l~A~D~~tG~~lW~~~l~~g~~ 517 (599)
T 1w6s_A 440 PGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPSGAI 517 (599)
T ss_dssp ECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred cCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecCCEEEE--ECCCCeEEEEECCCCCEEEEeeCCCCcE
Confidence 01 357899999999999888865544333223345677777 7889999999999999998886433221
Q ss_pred -EEEEECCCCC-EEEEEe
Q 011916 426 -LYLATSPDGQ-TIVTGA 441 (475)
Q Consensus 426 -~~l~~spdg~-~l~s~s 441 (475)
.-+.+..+|+ ++++.+
T Consensus 518 ~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 518 GYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp SCCEEEEETTEEEEEEEE
T ss_pred eccEEEEeCCEEEEEEEc
Confidence 2244556776 444433
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.3e-06 Score=75.08 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=130.6
Q ss_pred cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeeeEEecCCCCc-eEEEEeCC-CEEEEEeCCCcEE
Q 011916 199 KVTRLCDLGPGDSVCSVQWTREGSYISVGTNL--GQVQVWDGTQCKRVRTFGGHQTR-AGVLAWNS-RILSSGSRDRNIL 274 (475)
Q Consensus 199 ~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d--g~v~iwd~~~~~~~~~~~~h~~~-v~~l~~~~-~~l~sgs~dg~I~ 274 (475)
+++..+..........+.|+. +.++.+.+.+ ..|+++|+++++.+..+...... --.++..+ ++......++.+.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGF 88 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEE
T ss_pred EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEE
Confidence 344555444456788999986 4444444444 48999999999999887643332 23355544 5555566889999
Q ss_pred EEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccc-----cceeEEEECCCCCcE
Q 011916 275 QHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHT-----AAVKAIAWSPHQSSL 349 (475)
Q Consensus 275 iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~-----~~v~~l~~sp~~~~l 349 (475)
++|.. ..+.+.++.... .=.+++ +++..|+.+..++.|.++|..+.+.+..+.-.. ..++.+.|. +|. +
T Consensus 89 v~D~~-tl~~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~-l 162 (243)
T 3mbr_X 89 VYDLA-TLTPRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE-L 162 (243)
T ss_dssp EEETT-TTEEEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-E
T ss_pred EEECC-cCcEEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE-E
Confidence 99998 566666665432 223444 467777777778999999999998877665422 244566766 555 6
Q ss_pred EEEecCCCCCeEEEEECCCCceeeeecCC--------------CCeeEEEEcCCCCeEEEE
Q 011916 350 LASGGGTADRCIRFWNTSNGHQLNSVDTG--------------SQVCNLAWSKNVNELVST 396 (475)
Q Consensus 350 l~sg~Gs~d~~I~iwd~~~~~~~~~~~~~--------------~~v~~l~~s~~~~~l~~~ 396 (475)
++..- .+..|.+.|..+|+.+..++.. .-...|+++|+++.|+++
T Consensus 163 yanvw--~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 163 LANVW--LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp EEEET--TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred EEEEC--CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 66543 5789999999999999887522 245789999998888885
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-05 Score=74.47 Aligned_cols=234 Identities=10% Similarity=-0.009 Sum_probs=147.8
Q ss_pred CCEEEEEcCCeEEEEECCCCc--EEEEeeCCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeee-EEecCCCCce
Q 011916 179 QNVLAVGLGTCVYLWTASNSK--VTRLCDLGPGDSVCSVQWTREG-SYISVGTNLGQVQVWDGTQCKRV-RTFGGHQTRA 254 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~--~~~~~~~~~~~~V~~v~~spdg-~~la~g~~dg~v~iwd~~~~~~~-~~~~~h~~~v 254 (475)
.-+|..+....|+..++.+.. ..... .....+.+++|.+.+ .++++-...+.|..+++...... ..+...-...
T Consensus 4 ~p~ll~~~~~~I~~i~l~~~~~~~~~~~--~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p 81 (318)
T 3sov_A 4 APLLLYANRRDLRLVDATNGKENATIVV--GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP 81 (318)
T ss_dssp CCEEEEECEEEEEEEETTCTTSCCEEEE--EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred ccEEEEEccCeEEEEECCCCceEEEEEe--cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence 445667778889999998763 22222 223457789999854 44555556788999998765321 1222222233
Q ss_pred EEEEe--C-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEE
Q 011916 255 GVLAW--N-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG--NDNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 255 ~~l~~--~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~--~Dg~I~iwd~~~~~~~~~ 329 (475)
..+++ . +.++++-...+.|.++++.. ...............++++.|.+..|+.+. ..+.|...++........
T Consensus 82 ~glavd~~~g~ly~~d~~~~~I~~~~~dG-~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~ 160 (318)
T 3sov_A 82 DGLACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII 160 (318)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred cEEEEEcCCCeEEEEECCCCEEEEEECCC-CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE
Confidence 44444 3 45556666778999999873 222223334455688999998766666655 357888888875433222
Q ss_pred EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 330 ~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
....-.....|++++++..|+.+-. ..+.|..+|+.......... .......+++. +..++.+ ....+.|..++
T Consensus 161 ~~~~l~~Pnglavd~~~~~lY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~--~~~lywt-d~~~~~V~~~~ 235 (318)
T 3sov_A 161 INSEIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWT-DWSTHSILACN 235 (318)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSCCSCEEEEEEE--TTEEEEE-ETTTTEEEEEE
T ss_pred EECCCCCccEEEEeccCCEEEEEEC--CCCEEEEEcCCCCceEEEecCCCCCceEEEEe--CCEEEEE-ecCCCeEEEEE
Confidence 2233345689999998888888865 78899999987543332222 33456777775 3345443 56778999999
Q ss_pred CCCCceEEEecC
Q 011916 409 YPSMAKVSTLTG 420 (475)
Q Consensus 409 ~~~~~~~~~l~~ 420 (475)
..+++....+..
T Consensus 236 ~~~G~~~~~i~~ 247 (318)
T 3sov_A 236 KYTGEGLREIHS 247 (318)
T ss_dssp TTTCCSCEEEEC
T ss_pred CCCCCceEEEeC
Confidence 877776555543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.2e-05 Score=80.84 Aligned_cols=270 Identities=10% Similarity=0.009 Sum_probs=170.2
Q ss_pred ceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeC------CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Q 011916 170 YLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDL------GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~------~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~ 242 (475)
.+.++.-..+ ++.+++.+ .|++||..+++....... -....|.++...++|. |.+|+..+-|.++|..+.+
T Consensus 212 ~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~ 289 (781)
T 3v9f_A 212 DVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQ 289 (781)
T ss_dssp SEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-
T ss_pred ceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCe
Confidence 4566666555 56666655 899999988766543221 1246799998887775 6677775668889987665
Q ss_pred eeEEec--------------CCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEec----------CccCCEEE
Q 011916 243 RVRTFG--------------GHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLA----------GHKSEVCG 297 (475)
Q Consensus 243 ~~~~~~--------------~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~----------~h~~~V~~ 297 (475)
...... .....|.++..+ ...|..|+.++-|..++.... .. ..+. .....|.+
T Consensus 290 ~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~v~~ 367 (781)
T 3v9f_A 290 FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPP-TF-HTWSYSPTQMNESSLSNKVVSS 367 (781)
T ss_dssp --------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEEEBSSCEEEECSSCC-SC-EEEC----CCCSSCCSSSCEEE
T ss_pred eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCC-cc-eeeccCccccccCCCCCcceEE
Confidence 332111 134578888886 356788888888999987632 22 2221 12356999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE---eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 298 LKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL---TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 298 l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~---~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
+...++|. |..|+.++-|.+||..++...... ......|.++...+++...+.+ .++-|..+|..+++....
T Consensus 368 i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt----~~~Gl~~~~~~~~~~~~~ 442 (781)
T 3v9f_A 368 VCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGT----YLGNISYYNTRLKKFQII 442 (781)
T ss_dssp EEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEE----TTEEEEEECSSSCEEEEC
T ss_pred EEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEe----ccCCEEEEcCCCCcEEEe
Confidence 99888775 445665566899998754322110 1234678999998888743332 567799999877754332
Q ss_pred ec---CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCC-----CcceEEEEECCCCCEEEEEeCCCCE
Q 011916 375 VD---TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH-----SLRVLYLATSPDGQTIVTGAGDETL 446 (475)
Q Consensus 375 ~~---~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~l~s~s~Dg~I 446 (475)
.. ....|.++...+++...+. .. +.|..||..+++........ ...|.++...++|.+.+.. .++-|
T Consensus 443 ~~~~~~~~~v~~i~~d~~g~lwig---t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~~~Gl 517 (781)
T 3v9f_A 443 ELEKNELLDVRVFYEDKNKKIWIG---TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-FGGGV 517 (781)
T ss_dssp CSTTTCCCCEEEEEECTTSEEEEE---ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-SSSCE
T ss_pred ccCCCCCCeEEEEEECCCCCEEEE---EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-cCCCE
Confidence 21 2457888888888876654 33 56999998776543322222 4679999999999866644 43346
Q ss_pred EEEecCC
Q 011916 447 RFWNVFP 453 (475)
Q Consensus 447 ~iW~~~~ 453 (475)
..|+...
T Consensus 518 ~~~~~~~ 524 (781)
T 3v9f_A 518 GIYTPDM 524 (781)
T ss_dssp EEECTTC
T ss_pred EEEeCCC
Confidence 6677644
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.5e-05 Score=81.75 Aligned_cols=271 Identities=8% Similarity=-0.047 Sum_probs=173.1
Q ss_pred CceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEee-------C------CCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 169 FYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCD-------L------GPGDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~-------~------~~~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
..+.++.-..+ .+.+++..+.|++++..++....... . -....|.++....+|. |.+|+.++-|.
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~ 336 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGIN 336 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEE
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEE
Confidence 34666766665 45555555889999998876544322 0 1245799999988886 77888777789
Q ss_pred EEECCCCeeeEEec---------CCCCceEEEEeCC-CEEEEEeCCCcEEEEECCCCCccEEEe----cCccCCEEEEEE
Q 011916 235 VWDGTQCKRVRTFG---------GHQTRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDYICKL----AGHKSEVCGLKW 300 (475)
Q Consensus 235 iwd~~~~~~~~~~~---------~h~~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~----~~h~~~V~~l~~ 300 (475)
.++..+........ .....|.++..+. ..|..|+.++-|..+|... .. ...+ ......|.++..
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~-~~-~~~~~~~~~~~~~~v~~i~~ 414 (781)
T 3v9f_A 337 FISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGK-RV-AIYNKENRELLSNSVLCSLK 414 (781)
T ss_dssp EECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTE-EE-EECC-----CCCSBEEEEEE
T ss_pred EeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCC-Ce-EEEccCCCCCCCcceEEEEE
Confidence 99876554322210 1235688888864 6677888777788898752 11 1111 123457899988
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEe---ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLT---EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~ 377 (475)
.++|.+. .|+.++-|..+|..+++.. .+. .....|.++...+++...+.+ . +-|..||..+++.......
T Consensus 415 d~~g~lW-igt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwigt----~-~Gl~~~~~~~~~~~~~~~~ 487 (781)
T 3v9f_A 415 DSEGNLW-FGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWIGT----H-AGVFVIDLASKKVIHHYDT 487 (781)
T ss_dssp CTTSCEE-EEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEEEE----T-TEEEEEESSSSSCCEEECT
T ss_pred CCCCCEE-EEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEEEE----C-CceEEEeCCCCeEEecccC
Confidence 8777654 4666677999998776532 222 134678999998888733332 4 5689999887665433221
Q ss_pred ------CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC----CCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 378 ------GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG----HSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 378 ------~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
...|.++...++|...+. ...+-|..||..+.+.. .+.. ....|.++...++|.+.++. .+|.|.
T Consensus 488 ~~~~~~~~~i~~i~~d~~g~lWig---t~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~ 562 (781)
T 3v9f_A 488 SNSQLLENFVRSIAQDSEGRFWIG---TFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVC 562 (781)
T ss_dssp TTSSCSCSCEEEEEECTTCCEEEE---ESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEE
T ss_pred cccccccceeEEEEEcCCCCEEEE---EcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceE
Confidence 356889999998887765 33345888887665433 3321 24568999999999866654 466547
Q ss_pred EEecCCC
Q 011916 448 FWNVFPS 454 (475)
Q Consensus 448 iW~~~~~ 454 (475)
.||....
T Consensus 563 ~~d~~~~ 569 (781)
T 3v9f_A 563 FPSARNF 569 (781)
T ss_dssp ESCTTTC
T ss_pred EECCCCC
Confidence 7776544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-05 Score=83.98 Aligned_cols=261 Identities=11% Similarity=0.091 Sum_probs=161.0
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCC---CcEE-EEEEcC---CCC-EEEEEeC------CCeEEEEECCCCee
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPG---DSVC-SVQWTR---EGS-YISVGTN------LGQVQVWDGTQCKR 243 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~---~~V~-~v~~sp---dg~-~la~g~~------dg~v~iwd~~~~~~ 243 (475)
.+.+++++.++.|+-+|..+|+..-....... ..+. ...... +|+ .+++++. +|.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 45677777899999999999998765544221 0111 111111 233 5666653 78999999999998
Q ss_pred eEEecCCCCce-----------------------------------------EEEEeC--CCEEEEEeC-----------
Q 011916 244 VRTFGGHQTRA-----------------------------------------GVLAWN--SRILSSGSR----------- 269 (475)
Q Consensus 244 ~~~~~~h~~~v-----------------------------------------~~l~~~--~~~l~sgs~----------- 269 (475)
+.........+ ..++++ ..+++.+..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 87654321100 012232 356665553
Q ss_pred ---------C----CcEEEEECCCCCccEEEec--Ccc--------CCEEEEEEc-CCCC---EEEEEeCCCcEEEEECC
Q 011916 270 ---------D----RNILQHDLRVSSDYICKLA--GHK--------SEVCGLKWS-HDDR---ELASGGNDNQLLVWNQH 322 (475)
Q Consensus 270 ---------d----g~I~iwd~~~~~~~~~~~~--~h~--------~~V~~l~~s-~~~~---~lasg~~Dg~I~iwd~~ 322 (475)
| +.|..+|.++ ++.+-.++ .|. ..+. +... .+|+ .++.++.+|.++++|..
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~T-G~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~ 354 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSS-GEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRS 354 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTT-CCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETT
T ss_pred cCCCcccccCCcccceEEEEeCCC-CCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECC
Confidence 2 5799999984 44444332 232 1222 2222 4664 78889999999999999
Q ss_pred CCceeEEEecccc-------------c--------------------------------eeEEEECCCCCcEEEEec---
Q 011916 323 SQQPTLRLTEHTA-------------A--------------------------------VKAIAWSPHQSSLLASGG--- 354 (475)
Q Consensus 323 ~~~~~~~~~~h~~-------------~--------------------------------v~~l~~sp~~~~ll~sg~--- 354 (475)
+++.+..+..... + -..++++|+...+++...
T Consensus 355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~ 434 (582)
T 1flg_A 355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK 434 (582)
T ss_dssp TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence 9998876543210 0 013466666555544320
Q ss_pred ---------------------------CCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 355 ---------------------------GTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 355 ---------------------------Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
...++.|..||+.+|+.+........+..-.....+..+++ |+.|+.|+.|
T Consensus 435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~--g~~dg~l~A~ 512 (582)
T 1flg_A 435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKAF 512 (582)
T ss_dssp EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEEEEE
T ss_pred eeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEE--ECCCCcEEEE
Confidence 01368899999999999888765544433333345677777 7889999999
Q ss_pred ECCCCceEEEecCCCcce-EEEEECCCCC-EEEEEeC
Q 011916 408 KYPSMAKVSTLTGHSLRV-LYLATSPDGQ-TIVTGAG 442 (475)
Q Consensus 408 d~~~~~~~~~l~~h~~~V-~~l~~spdg~-~l~s~s~ 442 (475)
|..+++.+.+++.....+ .-+.|..+|+ |+++.+.
T Consensus 513 D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 513 DAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp ETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred ECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 999999998887543322 1255666886 4444433
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.1e-05 Score=72.29 Aligned_cols=237 Identities=10% Similarity=-0.003 Sum_probs=149.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CC-EEEEEeCCCcEEEEECCCCCccEEEec
Q 011916 213 CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SR-ILSSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 213 ~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
+|.+..+ ..+|+.+.. ..|+..++........+.. ...+..++|+ .. ++++-...+.|..+++... .......
T Consensus 37 ~C~~~~~-~~~ll~~~~-~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~-~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGP-EPVLLFANR-IDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGS-NVEEVVS 112 (349)
T ss_dssp CEEESSS-CCEEEEECB-SCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC
T ss_pred ccccccc-CceeEeecc-cceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCC-CceEEEe
Confidence 3544444 334555444 4588888776554444433 3457888886 34 4445556788999998733 3233333
Q ss_pred CccCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC-CeEEEEECC
Q 011916 290 GHKSEVCGLKWSHDDRE-LASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD-RCIRFWNTS 367 (475)
Q Consensus 290 ~h~~~V~~l~~s~~~~~-lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d-~~I~iwd~~ 367 (475)
.......++++.+.+.. +++-...+.|.+.++........+...-.....|++.|.+..|+.+.. .. +.|..+++.
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~--~~~~~I~r~~~d 190 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIEASSMD 190 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEEC--SSSCEEEEEETT
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEecc--CCCCEEEEEeCC
Confidence 33345678899875544 455555678999998765443333334456789999998887888764 34 889999986
Q ss_pred CCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCE
Q 011916 368 NGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETL 446 (475)
Q Consensus 368 ~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I 446 (475)
.......+. .-.....+++++++..|+.+ -...+.|..+++........+.........|++ ..+..+++-...+.|
T Consensus 191 G~~~~~~~~~~~~~PnGla~d~~~~~lY~a-D~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V 268 (349)
T 3v64_C 191 GSGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSI 268 (349)
T ss_dssp SCSCEESCCSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred CCCcEEEEECCCCCcceEEEeCCCCEEEEE-ECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeE
Confidence 543333322 23457899999988888775 446788999998754433334434455678888 344455555566778
Q ss_pred EEEecCCCCCC
Q 011916 447 RFWNVFPSLKA 457 (475)
Q Consensus 447 ~iW~~~~~~~~ 457 (475)
...+-.++...
T Consensus 269 ~~~~~~~G~~~ 279 (349)
T 3v64_C 269 NSANKFTGKNQ 279 (349)
T ss_dssp EEEETTTCCSC
T ss_pred EEEEccCCCcc
Confidence 77775555443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.61 E-value=0.00043 Score=66.44 Aligned_cols=264 Identities=8% Similarity=0.012 Sum_probs=148.6
Q ss_pred ceeEEecCC-CCEEEEEcCCeEEEEECCCCcE-EEEee-C-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeE
Q 011916 170 YLNLVDWSS-QNVLAVGLGTCVYLWTASNSKV-TRLCD-L-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVR 245 (475)
Q Consensus 170 ~v~~l~ws~-~~~la~~~~~~V~lw~~~~~~~-~~~~~-~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~ 245 (475)
.+..|.+.+ +.+++++..+.|+ ...+.++. ..... . .....+.+|.|.+ +..++ ++..|.|.. ..+.++.-.
T Consensus 37 ~~~~v~~~~~~~~~~~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~ 112 (327)
T 2xbg_A 37 TILDMSFIDRHHGWLVGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWS 112 (327)
T ss_dssp CEEEEEESSSSCEEEEETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCE
T ss_pred cEEEEEECCCCcEEEEcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCce
Confidence 466777765 4677788888764 34444432 22211 1 1245789999976 44444 455675544 223333322
Q ss_pred Eec---CCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEE-EE
Q 011916 246 TFG---GHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV-WN 320 (475)
Q Consensus 246 ~~~---~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~i-wd 320 (475)
.+. .+...+..+.+ ++..++.++.++.|..- .............+...+..+.+.+++.+++++.. +.++. +|
T Consensus 113 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~-G~~~~S~d 190 (327)
T 2xbg_A 113 QIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSR-GSFYSTWE 190 (327)
T ss_dssp ECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETT-SSEEEEEC
T ss_pred ECccccCCCCCeEEEEEECCCCEEEEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECC-CcEEEEeC
Confidence 222 23345666766 34444445556654321 11122333334455667999999999888877654 44444 44
Q ss_pred C--CCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-----CCCCeeEEEEcCCCCeE
Q 011916 321 Q--HSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-----TGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 321 ~--~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-----~~~~v~~l~~s~~~~~l 393 (475)
- .+.+.+ -......+..+++.+++. +++.+ .+|.+++.+...++....+. ....+..+.+.+++..+
T Consensus 191 ~gG~tW~~~--~~~~~~~~~~~~~~~~g~-~~~~~---~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~ 264 (327)
T 2xbg_A 191 PGQTAWEPH--NRTTSRRLHNMGFTPDGR-LWMIV---NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVW 264 (327)
T ss_dssp TTCSSCEEE--ECCSSSCEEEEEECTTSC-EEEEE---TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEE
T ss_pred CCCCceeEC--CCCCCCccceeEECCCCC-EEEEe---CCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEE
Confidence 2 223332 123456788999999887 44444 47888776533344433332 12357889999877766
Q ss_pred EEEEecCCCeEEEEECCCCceEEEec---CCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 394 VSTHGYSQNQIMVWKYPSMAKVSTLT---GHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 394 ~~~~g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
++ + .++.| ++....++.-..+. .+...+..+.|..++ .++.++.+|.|.-++
T Consensus 265 ~~--g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 265 LA--G-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV 319 (327)
T ss_dssp EE--E-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred EE--e-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence 65 4 46666 34444444333333 234567888887555 466677889766554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-05 Score=74.64 Aligned_cols=237 Identities=10% Similarity=0.003 Sum_probs=150.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CC-EEEEEeCCCcEEEEECCCCCccEEEecC
Q 011916 214 SVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SR-ILSSGSRDRNILQHDLRVSSDYICKLAG 290 (475)
Q Consensus 214 ~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~ 290 (475)
|.+..+ ..+|+.+.. ..|+.+++........+. .......++|+ .. ++++-...+.|..+++... .....+..
T Consensus 81 C~~~~~-~~~l~~~~~-~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~-~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGP-EPVLLFANR-IDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS-NVEEVVST 156 (386)
T ss_dssp EEECSS-CCEEEEECB-SCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CEEEEECS
T ss_pred ECCccc-cceeEeecC-ccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC-CcEEEEeC
Confidence 444444 334555444 568888887665544443 33457888986 34 4555556788999998733 22223333
Q ss_pred ccCCEEEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCC-CeEEEEECCC
Q 011916 291 HKSEVCGLKWSHDDREL-ASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD-RCIRFWNTSN 368 (475)
Q Consensus 291 h~~~V~~l~~s~~~~~l-asg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d-~~I~iwd~~~ 368 (475)
......++++.+.+..| ++-...+.|.+.++........+...-.....|++.|.+..|+.+-. .. +.|..+++..
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~--~~~~~I~r~~~dG 234 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDW--GNTPRIEASSMDG 234 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTS
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEecc--CCCCEEEEEeCCC
Confidence 33456778888755544 45455678999888755443334334456789999998888888764 34 7899999865
Q ss_pred Cceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 369 GHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 369 ~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
........ .-.....|+|++++..|+.+ -...+.|..+|+........+.........|++ ..+.++++-...+.|.
T Consensus 235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~ 312 (386)
T 3v65_B 235 SGRRIIADTHLFWPNGLTIDYAGRRMYWV-DAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSIN 312 (386)
T ss_dssp CSCEEEECSSCSCEEEEEEEGGGTEEEEE-ETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEE
T ss_pred CCcEEEEECCCCCeeeEEEeCCCCEEEEE-ECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEE
Confidence 44333333 23457899999988888775 456788999998754444344434455678888 3445555555677788
Q ss_pred EEecCCCCCCC
Q 011916 448 FWNVFPSLKAP 458 (475)
Q Consensus 448 iW~~~~~~~~~ 458 (475)
.++...+....
T Consensus 313 ~~~~~~G~~~~ 323 (386)
T 3v65_B 313 SANKFTGKNQE 323 (386)
T ss_dssp EEETTTCCSCE
T ss_pred EEECCCCcceE
Confidence 88855554433
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.9e-06 Score=89.91 Aligned_cols=250 Identities=10% Similarity=0.069 Sum_probs=142.3
Q ss_pred eEEEEECCCCcEEEEeeC--CCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEE--ecCCCCceEEEEe-CCC
Q 011916 189 CVYLWTASNSKVTRLCDL--GPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKRVRT--FGGHQTRAGVLAW-NSR 262 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~--~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~~~~--~~~h~~~v~~l~~-~~~ 262 (475)
.+.+||..+++...+..+ .+.....++++..+|+++++|+. ++.+.+||..+.+-... +........+... +++
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~ 299 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 299 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCe
Confidence 689999998876544332 22333345778889999999985 46899999887654433 2222223344555 789
Q ss_pred EEEEEe-CC-----CcEEEEECCCCCccEEEecC-----ccCCEEEEEEcCCCCEEEEEeCC---------CcEEEEECC
Q 011916 263 ILSSGS-RD-----RNILQHDLRVSSDYICKLAG-----HKSEVCGLKWSHDDRELASGGND---------NQLLVWNQH 322 (475)
Q Consensus 263 ~l~sgs-~d-----g~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~s~~~~~lasg~~D---------g~I~iwd~~ 322 (475)
+++.|+ .+ ..+.+||... .... .+.. ....-....+..++..++.|+.+ ..+..||..
T Consensus 300 iyv~GG~~~~~~~~~~~e~yd~~t-~~W~-~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~ 377 (656)
T 1k3i_A 300 VFTIGGSWSGGVFEKNGEVYSPSS-KTWT-SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 377 (656)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTT-TEEE-EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred EEEEeCcccCCcccccceEeCCCC-Ccce-eCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence 999988 44 5689999873 2222 2210 00000001122355555556544 356788888
Q ss_pred CCceeEEEecccc---------ceeEEEECCCCCcEEEEecCCC-C-----C---eEEEEECCCCceeeee----cCCCC
Q 011916 323 SQQPTLRLTEHTA---------AVKAIAWSPHQSSLLASGGGTA-D-----R---CIRFWNTSNGHQLNSV----DTGSQ 380 (475)
Q Consensus 323 ~~~~~~~~~~h~~---------~v~~l~~sp~~~~ll~sg~Gs~-d-----~---~I~iwd~~~~~~~~~~----~~~~~ 380 (475)
+.........+.. .-.++.|...+..|++.||... + . .|.+||..+..-.... .....
T Consensus 378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~ 457 (656)
T 1k3i_A 378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 457 (656)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcc
Confidence 7654333222211 2344555444555888775210 1 1 6888888776544332 12222
Q ss_pred eeEEEEcCCCCeEEEEEecCC-----------CeEEEEECCCCceEE--EecCCCcceEEEEECCCCCEEEEEeC
Q 011916 381 VCNLAWSKNVNELVSTHGYSQ-----------NQIMVWKYPSMAKVS--TLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~d-----------g~I~iwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
-.+++..++++.+++ |..+ ..+.+||..+.+... .+...........+.+||+.++.|+.
T Consensus 458 ~~~~~~l~~g~i~v~--GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 458 FHTSVVLPDGSTFIT--GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp SCEEEECTTSCEEEE--CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cCCeEECCCCCEEEE--CCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 345566788888777 5432 468999987654322 11111122234556799999999885
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=0.00012 Score=70.02 Aligned_cols=232 Identities=9% Similarity=0.009 Sum_probs=135.9
Q ss_pred eeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCC------------------CCCcEEEEEEcC-CCCEEEEEeC
Q 011916 171 LNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLG------------------PGDSVCSVQWTR-EGSYISVGTN 229 (475)
Q Consensus 171 v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~------------------~~~~V~~v~~sp-dg~~la~g~~ 229 (475)
...++|+++ + +++...++.|+.|+..+++........ ....+.++++.+ +| .|+++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEEC
Confidence 345778775 5 555555889999998877665433211 013578999998 55 4666655
Q ss_pred CCeEEEEECCCCeeeEEec---C-CCCceEEEEeC---CCEEEEEeC-----------------CCcEEEEECCCCCccE
Q 011916 230 LGQVQVWDGTQCKRVRTFG---G-HQTRAGVLAWN---SRILSSGSR-----------------DRNILQHDLRVSSDYI 285 (475)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~---~-h~~~v~~l~~~---~~~l~sgs~-----------------dg~I~iwd~~~~~~~~ 285 (475)
.+.|..+|..+++...... + .......++++ +++.++-.. ++.|..+|... +..
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~-~~~- 177 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPST-KET- 177 (322)
T ss_dssp TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTT-TEE-
T ss_pred CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCC-CEE-
Confidence 5568888877554322111 1 11245667764 344444322 35677787652 222
Q ss_pred EEecCccCCEEEEEEcCCCCEEEEE-eCCCcEEEEECCCCc--eeEEEeccccceeEEEECCCCCcEEEEecC-------
Q 011916 286 CKLAGHKSEVCGLKWSHDDRELASG-GNDNQLLVWNQHSQQ--PTLRLTEHTAAVKAIAWSPHQSSLLASGGG------- 355 (475)
Q Consensus 286 ~~~~~h~~~V~~l~~s~~~~~lasg-~~Dg~I~iwd~~~~~--~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G------- 355 (475)
..+.........|+|+++++.|+.+ ...+.|.+|++.... ....+....+ ...+++.++|..+++....
T Consensus 178 ~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~ 256 (322)
T 2fp8_A 178 TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHG 256 (322)
T ss_dssp EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTS
T ss_pred EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccC
Confidence 2221122345679999999866665 556899999987531 1122222223 7889999999844443210
Q ss_pred CCCCeEEEEECCCCceeeeecCC-----CCeeEEEEcCCCCeEEEEEecCCCeEEEEECC
Q 011916 356 TADRCIRFWNTSNGHQLNSVDTG-----SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 356 s~d~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
...+.|..+|. .++.+..+... ..+..+++ .++ .|+++ ....+.|.++++.
T Consensus 257 ~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g-~L~v~-~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 257 RVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDG-LLYIG-TLFHGSVGILVYD 312 (322)
T ss_dssp CEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETT-EEEEE-CSSCSEEEEEEC-
T ss_pred CCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCC-EEEEe-ecCCCceEEEecc
Confidence 01467888886 47777666432 34666666 344 44442 5567888888875
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.53 E-value=0.0002 Score=77.02 Aligned_cols=234 Identities=12% Similarity=-0.051 Sum_probs=149.3
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEECCCC----eeeEEecCCCC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI-SVGTNLGQVQVWDGTQC----KRVRTFGGHQT 252 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~l-a~g~~dg~v~iwd~~~~----~~~~~~~~h~~ 252 (475)
...+|..+....|+..++.......+.. ....+.+|+|.+.+..| ++-...+.|+.+++... .....+.....
T Consensus 394 ~~p~Ll~an~~~Ir~i~l~~~~~~~l~~--~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~ 471 (791)
T 3m0c_C 394 SIAYLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ 471 (791)
T ss_dssp SCCEEEEECBSSEEEECTTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS
T ss_pred cccccccccccceeEeeccCCcceeeec--CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC
Confidence 3456777777888888888777666653 35678899999855444 45555688999998753 22333332333
Q ss_pred ceEEEEe--CC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCcee
Q 011916 253 RAGVLAW--NS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN--DNQLLVWNQHSQQPT 327 (475)
Q Consensus 253 ~v~~l~~--~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~--Dg~I~iwd~~~~~~~ 327 (475)
....|++ .+ +++++-...+.|.+.++.. ......+........+|++.|.+..|+.... .+.|.+.++......
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG-~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY 550 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCCC-CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE
Confidence 4444554 44 5556666788999999873 3322333334456899999997666666543 267999998765443
Q ss_pred EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEEEEecCCCeE
Q 011916 328 LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHGYSQNQI 404 (475)
Q Consensus 328 ~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~g~~dg~I 404 (475)
..+...-.....|++.+.+..|+.+-. ..+.|..+++........+... .....|++. +..|+.+ -...+.|
T Consensus 551 ~lv~~~l~~P~GLavD~~~~~LYwaD~--~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwt-D~~~~~I 625 (791)
T 3m0c_C 551 SLVTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DIINEAI 625 (791)
T ss_dssp EEECSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ETTTTEE
T ss_pred EEEeCCCCCceEEEEecCCCeEEEEeC--CCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEE-ECCCCEE
Confidence 333333456889999988888888754 6789999998655444443321 234556653 4466654 5567888
Q ss_pred EEEECCCCceEEEec
Q 011916 405 MVWKYPSMAKVSTLT 419 (475)
Q Consensus 405 ~iwd~~~~~~~~~l~ 419 (475)
...+..+++.+..+.
T Consensus 626 ~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 626 FSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEETTTCCCCEEEE
T ss_pred EEEeCCCCcceEEee
Confidence 888877776555543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=0.0004 Score=72.84 Aligned_cols=232 Identities=8% Similarity=-0.074 Sum_probs=151.4
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEecCCCCceEE
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQTRAGV 256 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 256 (475)
|+.+|..+..+.|...++++........+..-..+..|+|.+.+..|+ +-..++.|..+++........+.........
T Consensus 5 p~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 5 PEAFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp CCCEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred CCcEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 345677778899999999887665555444446788999999665555 4456789999998765444444322233444
Q ss_pred EEe--CC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEEe
Q 011916 257 LAW--NS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG--NDNQLLVWNQHSQQPTLRLT 331 (475)
Q Consensus 257 l~~--~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~--~Dg~I~iwd~~~~~~~~~~~ 331 (475)
+++ .+ +++++-...+.|.+.++... .........-....+|++.|....|.... ..+.|...++........+
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~-~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~- 162 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQ-HRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV- 162 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTST-TCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCC-cEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-
Confidence 554 44 45566566788999998733 22222324445678999998655666554 2467888888755433333
Q ss_pred ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 332 EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 332 ~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
..-.....|++.+++..|+.+-. ..+.|..+|+.................+++.. ..|+.+ -...+.|...|..+
T Consensus 163 ~~~~~P~GlalD~~~~~LY~aD~--~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~--~~ly~t-D~~~~~I~~~dk~t 237 (628)
T 4a0p_A 163 PNVGRANGLTIDYAKRRLYWTDL--DTNLIESSNMLGLNREVIADDLPHPFGLTQYQ--DYIYWT-DWSRRSIERANKTS 237 (628)
T ss_dssp CSCSSEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECCSCEEEEEEET--TEEEEE-ETTTTEEEEEETTT
T ss_pred CCCCCcceEEEccccCEEEEEEC--CCCEEEEEcCCCCceEEeeccCCCceEEEEEC--CEEEEe-cCCCCEEEEEECCC
Confidence 34456789999998888888865 78899999987654422223334566777764 355553 45678888888766
Q ss_pred CceEE
Q 011916 412 MAKVS 416 (475)
Q Consensus 412 ~~~~~ 416 (475)
++...
T Consensus 238 g~~~~ 242 (628)
T 4a0p_A 238 GQNRT 242 (628)
T ss_dssp CCSCE
T ss_pred CCceE
Confidence 64433
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=0.00049 Score=65.69 Aligned_cols=230 Identities=13% Similarity=0.031 Sum_probs=144.0
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CC-EEEEEeCCCcEEEEECCCC---CccEEEecCccCCEE
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SR-ILSSGSRDRNILQHDLRVS---SDYICKLAGHKSEVC 296 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V~ 296 (475)
+|+.+.. ..|+..|+.+.+....+. .......++|+ +. ++++-..++.|..+++... ......+........
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 4555554 468889988776655544 34567788885 34 4555556789999998731 222222332334567
Q ss_pred EEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 297 GLKWSHDDREL-ASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 297 ~l~~s~~~~~l-asg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
++++.+.+..| ++-...+.|.+.++........+.........+++.|.+..++.+..+ ..+.|..+++... ....+
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~-~~~~I~~~~~dG~-~~~~~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGV-DIYSL 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSC-CEEEE
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC-CCCeEEEEcCCCC-CeEEE
Confidence 89998755444 454567899999987554333333334567899999988878877541 2378998887543 33333
Q ss_pred -c-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec--CCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 376 -D-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT--GHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 376 -~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
. .-.....+++++++..|+.+ -...+.|..+|+.......... ..-.....|++. .+..+++-...+.|..++.
T Consensus 159 ~~~~~~~P~gla~d~~~~~lY~~-D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~ 236 (316)
T 1ijq_A 159 VTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 236 (316)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred EECCCCCceEEEEeccCCEEEEE-ECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence 2 33567899999988888775 4466799999987433222222 223446778874 3555555556778888887
Q ss_pred CCCCCCC
Q 011916 452 FPSLKAP 458 (475)
Q Consensus 452 ~~~~~~~ 458 (475)
.++....
T Consensus 237 ~~g~~~~ 243 (316)
T 1ijq_A 237 LTGSDVN 243 (316)
T ss_dssp TTCCCCE
T ss_pred CCCcceE
Confidence 6665443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=0.0012 Score=64.53 Aligned_cols=272 Identities=8% Similarity=0.060 Sum_probs=184.5
Q ss_pred EecCCCCEEEEEc----CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 174 VDWSSQNVLAVGL----GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 174 l~ws~~~~la~~~----~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
+.+.+|.++++-. +..|.|-|+.++..+....+..+ +.-.+|..+.||.-. ..+++|+|+++...++.+..
T Consensus 30 ~TmESDkyicVrE~~~~~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~ 104 (494)
T 1bpo_A 30 LTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM 104 (494)
T ss_dssp EEEEETTEEEEEECCTTCCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC
T ss_pred eeeecCceEEEEecCCCCCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec
Confidence 3444566666543 34788888887654433333322 445688888888776 57999999999999988875
Q ss_pred CCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCcc----CCEEEEEEcCCCCEEEEEe-------CCCcEE
Q 011916 250 HQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHK----SEVCGLKWSHDDRELASGG-------NDNQLL 317 (475)
Q Consensus 250 h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~~V~~l~~s~~~~~lasg~-------~Dg~I~ 317 (475)
.. .|.--.| +.+.|+..+ +..|+.|++.....+++.+..|. ..|..-..+++.++++..| -.|.+.
T Consensus 105 ~e-~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQ 182 (494)
T 1bpo_A 105 TD-DVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 182 (494)
T ss_dssp SS-CCCEEEEEETTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEE
T ss_pred CC-CceEEEecCCCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEE
Confidence 44 5667777 777777765 46899999986566777666554 4688888899999887654 246788
Q ss_pred EEECCCCceeEEEeccccceeEEEECCC--CCcEEEEec-CCCCCeEEEEECCCC---c-----eeeeec-----CCCCe
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPH--QSSLLASGG-GTADRCIRFWNTSNG---H-----QLNSVD-----TGSQV 381 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~sp~--~~~ll~sg~-Gs~d~~I~iwd~~~~---~-----~~~~~~-----~~~~v 381 (475)
+|..+.+. -+.+.+|.+....+....+ ...|++.+. ....++++|-++... . ....+. ...-.
T Consensus 183 LYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP 261 (494)
T 1bpo_A 183 LYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (494)
T ss_dssp EEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred Eeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence 99987653 4677788777665555422 223444432 112378999998543 1 111111 12346
Q ss_pred eEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.++..++....++. -..-|.|++||+.++..+..-+-....|..-+-.....=++.....|.|.--.++...
T Consensus 262 vamqvs~kygviyv--iTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 262 VAMQISEKHDVVFL--ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEEEETTTTEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred eEEEecccCCEEEE--EecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 67888888888887 4578999999999999998877667777666665555556666688887777766554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.45 E-value=0.00024 Score=67.36 Aligned_cols=219 Identities=11% Similarity=0.052 Sum_probs=134.6
Q ss_pred CceeEEecCCC-CEEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC--CeEEEEECCCCeee
Q 011916 169 FYLNLVDWSSQ-NVLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL--GQVQVWDGTQCKRV 244 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d--g~v~iwd~~~~~~~ 244 (475)
.+...++|+++ +++.+. .++.|+.|+..+. ....... ...+..+++.++|+++++.... ..|..+|..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~--~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV--EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC--SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC--CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 45677899876 566665 4789999998764 4444432 4578999999999965555432 24777787777654
Q ss_pred EEecC-CCCceEEEE-eCCCEEEEE-eCCCcEEEEECCCCCccEEEec---------CccCCEEEEEEcCCCCEEEEEe-
Q 011916 245 RTFGG-HQTRAGVLA-WNSRILSSG-SRDRNILQHDLRVSSDYICKLA---------GHKSEVCGLKWSHDDRELASGG- 311 (475)
Q Consensus 245 ~~~~~-h~~~v~~l~-~~~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~---------~h~~~V~~l~~s~~~~~lasg~- 311 (475)
..... .......++ |.+..++.. ..++.|..+|.......+.... ..-.....| +++++.|+.+.
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~ 186 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT 186 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC
Confidence 33321 112223333 444444444 4588888888753211111110 111245566 77887665554
Q ss_pred CCCcEEEEECCC-Cce--eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee--eecCC-CCeeEEE
Q 011916 312 NDNQLLVWNQHS-QQP--TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN--SVDTG-SQVCNLA 385 (475)
Q Consensus 312 ~Dg~I~iwd~~~-~~~--~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~--~~~~~-~~v~~l~ 385 (475)
..+.|.++|+.. ++. ...+.. ......+++.++|. ++++.. ..+.|.++|.. ++... .+... ....+++
T Consensus 187 ~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~-l~va~~--~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a 261 (306)
T 2p4o_A 187 EKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGN-LYGATH--IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVA 261 (306)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCC-EEEECB--TTCCEEEECTT-CCEEEEECGGGTCTTEEEEE
T ss_pred CCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCC-EEEEeC--CCCeEEEECCC-CCEEEEeecccccCCceEEE
Confidence 567899999874 321 122211 13467899999997 555533 57889999975 65532 34433 6689999
Q ss_pred Ec---CCCCeEEEEE
Q 011916 386 WS---KNVNELVSTH 397 (475)
Q Consensus 386 ~s---~~~~~l~~~~ 397 (475)
|. ++++.|+++.
T Consensus 262 ~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 262 FGQTEGDCTAIYVVT 276 (306)
T ss_dssp ECCSTTTTTEEEEEE
T ss_pred EecccCCCCEEEEEC
Confidence 98 8888888754
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00012 Score=73.13 Aligned_cols=234 Identities=9% Similarity=0.019 Sum_probs=139.4
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeC-CC----cEEEEECCCCC
Q 011916 211 SVCSVQWTR-EGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSR-DR----NILQHDLRVSS 282 (475)
Q Consensus 211 ~V~~v~~sp-dg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~-dg----~I~iwd~~~~~ 282 (475)
....|+|+| ++..|+++...+.|+.+|+..+....... .......++++ ++.|+++.. ++ .+.+.+.....
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence 456889998 45566666665889999988776554443 44567788885 565555543 22 23444433211
Q ss_pred ccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEec-cccceeEEEECCCCCcEEEEecCCCCCe
Q 011916 283 DYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRC 360 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~ 360 (475)
.....+. ......+++++| ++.++++-..++.|+.++...+........ .......|+|+|++++|+++.. ..+.
T Consensus 217 ~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~--~~~~ 293 (430)
T 3tc9_A 217 KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV--NQHY 293 (430)
T ss_dssp CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET--TTTE
T ss_pred eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC--CCCE
Confidence 1112222 123456788999 676666666778999999987654222221 2234678999999997877754 6889
Q ss_pred EEEEECCC--Cce--eeeec-C-C--------------CCee-EEEEc--------CCCCeEEEEEecCCCeEEEEECCC
Q 011916 361 IRFWNTSN--GHQ--LNSVD-T-G--------------SQVC-NLAWS--------KNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 361 I~iwd~~~--~~~--~~~~~-~-~--------------~~v~-~l~~s--------~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
|..++... +.. +..+. . + .... .++.. +++..+++ -...+.|+.++ ++
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyva--D~~n~~I~~i~-~~ 370 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFC--DRENHCIRILT-PQ 370 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEE--EGGGTEEEEEC-TT
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEE--ECCCcEEEEEC-CC
Confidence 99987653 221 11111 0 0 1122 34443 33444444 55677888888 45
Q ss_pred CceEEEecCC---------C---------cceEEEEECCC-CCEEEEEeCCCCEEEEecC
Q 011916 412 MAKVSTLTGH---------S---------LRVLYLATSPD-GQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 412 ~~~~~~l~~h---------~---------~~V~~l~~spd-g~~l~s~s~Dg~I~iW~~~ 452 (475)
+... .+.+. . .....|+++++ +.++++-.....|+.++++
T Consensus 371 G~v~-~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 371 GRVT-TFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp SEEE-EEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CcEE-EEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 5433 22211 1 24789999995 6555555566778877764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00039 Score=64.00 Aligned_cols=196 Identities=15% Similarity=0.192 Sum_probs=131.4
Q ss_pred CCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGS-YISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~-~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
+-.+.+..++|+|++. ++++...++.|...|.. ++.++.+. +.....-.+++. +.++++.-.++.+.++++....
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence 4446799999999765 45557778899999988 88887764 223456677773 4455555577889999887544
Q ss_pred c--cEEEec------CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC---CCceeEEEec-------cccceeEEEECC
Q 011916 283 D--YICKLA------GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH---SQQPTLRLTE-------HTAAVKAIAWSP 344 (475)
Q Consensus 283 ~--~~~~~~------~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~---~~~~~~~~~~-------h~~~v~~l~~sp 344 (475)
. .+.... ..+....+|+|+|+++.|.++.+.....||.+. ....+..+.. +...+.+++++|
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 3 112221 234557899999998877777665555555543 1112222211 233568999999
Q ss_pred CCCcEEEEecCCCCCeEEEEECCCCceeeeecCC----------CCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 345 HQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG----------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 345 ~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~----------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
....+++... ..+.|.++|.. |+.+..+... .+.-.++|.++|+..++ ++.+.+++|.-
T Consensus 183 ~tg~lliLS~--~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv---sE~n~~y~f~~ 251 (255)
T 3qqz_A 183 QKNTLLVLSH--ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV---SEPNRFYRFTP 251 (255)
T ss_dssp TTTEEEEEET--TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE---ETTTEEEEEEC
T ss_pred CCCeEEEEEC--CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE---cCCceEEEEEe
Confidence 8888888876 88999999965 5566555322 37789999999985555 35667777653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00024 Score=67.95 Aligned_cols=232 Identities=12% Similarity=0.028 Sum_probs=143.7
Q ss_pred EEEEEeCCCeEEEEECCCCe-eeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEE
Q 011916 223 YISVGTNLGQVQVWDGTQCK-RVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGL 298 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~-~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 298 (475)
+|+.+. ...|+.+++.... .....-.....+.+++|+ +.++++-...+.|..+++.........+...-....++
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEc-cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 444444 3578889987653 111111122356688885 34555556778899999874422222222223456788
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-
Q 011916 299 KWSHDDR-ELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD- 376 (475)
Q Consensus 299 ~~s~~~~-~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~- 376 (475)
++.+.+. ++++-...+.|.++++........+.........|++.|.+..|+.+-.+ ..+.|...++........+.
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~dG~~~~~~~~~ 163 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINS 163 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEETTSCSCEEEECS
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEcCCCCeEEEEEC
Confidence 8887444 44555566789999987654333333444567899999987777777521 35789999876433322222
Q ss_pred CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 377 TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 377 ~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.-.....|++++++..|+.+ -...+.|..+|+........+.+.......+++.. +.++++-...+.|..++..++..
T Consensus 164 ~l~~Pnglavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 164 EIYWPNGLTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp SCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCCccEEEEeccCCEEEEE-ECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence 23457899999988888775 45678999999875433333333445567788753 34455555667888888876655
Q ss_pred CC
Q 011916 457 AP 458 (475)
Q Consensus 457 ~~ 458 (475)
..
T Consensus 242 ~~ 243 (318)
T 3sov_A 242 LR 243 (318)
T ss_dssp CE
T ss_pred eE
Confidence 43
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-05 Score=83.58 Aligned_cols=238 Identities=12% Similarity=0.054 Sum_probs=132.3
Q ss_pred CceeEEecC-CC-CEEEEEcC--C----eEEEEECCCC-cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-----CeEE
Q 011916 169 FYLNLVDWS-SQ-NVLAVGLG--T----CVYLWTASNS-KVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-----GQVQ 234 (475)
Q Consensus 169 ~~v~~l~ws-~~-~~la~~~~--~----~V~lw~~~~~-~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-----g~v~ 234 (475)
+.+....|| |+ +.+|.+.+ | .|+++|+.++ +.... .-......++|+|||+.|+....+ ..|.
T Consensus 174 ~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~ 250 (751)
T 2xe4_A 174 CDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVW 250 (751)
T ss_dssp CEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---CEEEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred EEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---cccCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence 367889999 87 55665442 2 4999999998 62110 001123468899999988887765 2588
Q ss_pred EEECCCCee--eEEec-CCCCceEEEEe--CCCEEEEEe---CCCcEEEEECCCCCccE--EEe-cCccCCEEEEEEcCC
Q 011916 235 VWDGTQCKR--VRTFG-GHQTRAGVLAW--NSRILSSGS---RDRNILQHDLRVSSDYI--CKL-AGHKSEVCGLKWSHD 303 (475)
Q Consensus 235 iwd~~~~~~--~~~~~-~h~~~v~~l~~--~~~~l~sgs---~dg~I~iwd~~~~~~~~--~~~-~~h~~~V~~l~~s~~ 303 (475)
++++.++.. ...+. ........+.| ++++|+... ....|.++|+....... ..+ .........+.|+.+
T Consensus 251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g 330 (751)
T 2xe4_A 251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGT 330 (751)
T ss_dssp EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETT
T ss_pred EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeC
Confidence 888877642 23333 22334566777 567666554 23467888887432222 333 333445566666544
Q ss_pred CCEEEEEeCC----CcEEEEECCCCceeEE-Eecccc--ceeEEEECCCCCcEEEEecCCCCCe--EEEEEC-------C
Q 011916 304 DRELASGGND----NQLLVWNQHSQQPTLR-LTEHTA--AVKAIAWSPHQSSLLASGGGTADRC--IRFWNT-------S 367 (475)
Q Consensus 304 ~~~lasg~~D----g~I~iwd~~~~~~~~~-~~~h~~--~v~~l~~sp~~~~ll~sg~Gs~d~~--I~iwd~-------~ 367 (475)
+.+++....+ ..|.++|+.+...... +..+.. .+..+.+. +..|+++.. .++. |.++|+ .
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~--~~g~~~l~~~dl~~~~~~~~ 406 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGR--RAGLTRIWTMMADSQDGVFK 406 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEE--ETTEEEEEEEECCTTTSCCC
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEE--eCCEEEEEEEeccccccccc
Confidence 4344444333 3677788765222122 223333 34555554 566777754 5665 566675 3
Q ss_pred CCceeeeecCCCC--eeEEEE----cCCCCeEEEEEecC--CCeEEEEECCCCc
Q 011916 368 NGHQLNSVDTGSQ--VCNLAW----SKNVNELVSTHGYS--QNQIMVWKYPSMA 413 (475)
Q Consensus 368 ~~~~~~~~~~~~~--v~~l~~----s~~~~~l~~~~g~~--dg~I~iwd~~~~~ 413 (475)
+++....+..... +..+.+ ++++..++.+..+. -..++.+|+.+++
T Consensus 407 ~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 407 AGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp TTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred CCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 4441344433333 333332 45666665543322 2467788887665
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-05 Score=83.18 Aligned_cols=239 Identities=10% Similarity=0.069 Sum_probs=131.3
Q ss_pred cEEEEEEc-CCCCEEEEEeCC-C----eEEEEECCCC-eeeEE-ecCCCCceEEEEe--CCCEEEEEeCC-----CcEEE
Q 011916 211 SVCSVQWT-REGSYISVGTNL-G----QVQVWDGTQC-KRVRT-FGGHQTRAGVLAW--NSRILSSGSRD-----RNILQ 275 (475)
Q Consensus 211 ~V~~v~~s-pdg~~la~g~~d-g----~v~iwd~~~~-~~~~~-~~~h~~~v~~l~~--~~~~l~sgs~d-----g~I~i 275 (475)
.+...+|| |||++||.+... | .|+++|+.++ +.+.. +. .....++| +++.|+....+ ..|..
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57789999 999999876542 3 4999999988 63211 11 11345778 45666666554 25777
Q ss_pred EECCCCCcc-EEEec-CccCCEEEEEEcCCCCEEEEEeC---CCcEEEEECCCCc-ee--EEEe-ccccceeEEEECCCC
Q 011916 276 HDLRVSSDY-ICKLA-GHKSEVCGLKWSHDDRELASGGN---DNQLLVWNQHSQQ-PT--LRLT-EHTAAVKAIAWSPHQ 346 (475)
Q Consensus 276 wd~~~~~~~-~~~~~-~h~~~V~~l~~s~~~~~lasg~~---Dg~I~iwd~~~~~-~~--~~~~-~h~~~v~~l~~sp~~ 346 (475)
+++...... ...+. ........+.|+|||++|+.... ...|+++|+.++. .. ..+. ........+.|+. +
T Consensus 252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g 330 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T 330 (751)
T ss_dssp EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence 888643322 22222 23345678899999998887653 3478899998752 22 3333 2344455566554 5
Q ss_pred CcEEEEecC--CCCCeEEEEECCCC-ceee-eecCCCCeeEEEEcCCCCeEEEEEecCCCe--EEEEEC-------CCCc
Q 011916 347 SSLLASGGG--TADRCIRFWNTSNG-HQLN-SVDTGSQVCNLAWSKNVNELVSTHGYSQNQ--IMVWKY-------PSMA 413 (475)
Q Consensus 347 ~~ll~sg~G--s~d~~I~iwd~~~~-~~~~-~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~--I~iwd~-------~~~~ 413 (475)
..|++.... .....|..+|+.++ +... .+.+...+.--.+...++.|++. ...++. |.++++ ..++
T Consensus 331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~~~~lv~~-~~~~g~~~l~~~dl~~~~~~~~~g~ 409 (751)
T 2xe4_A 331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVRSNYLVVA-GRRAGLTRIWTMMADSQDGVFKAGT 409 (751)
T ss_dssp TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEECSSEEEEE-EEETTEEEEEEEECCTTTSCCCTTT
T ss_pred CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEECCEEEEE-EEeCCEEEEEEEecccccccccCCc
Confidence 555555431 12357888888753 2222 33333332222334445666654 445664 566675 3333
Q ss_pred eEEEecC-CCcceEEEEE----CCCCC-EEEEEeCC---CCEEEEecCCC
Q 011916 414 KVSTLTG-HSLRVLYLAT----SPDGQ-TIVTGAGD---ETLRFWNVFPS 454 (475)
Q Consensus 414 ~~~~l~~-h~~~V~~l~~----spdg~-~l~s~s~D---g~I~iW~~~~~ 454 (475)
.+..+.- ....+..+.+ ++++. ++++.+.. ..+..+|+.++
T Consensus 410 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~ 459 (751)
T 2xe4_A 410 GLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDH 459 (751)
T ss_dssp CCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTC
T ss_pred cceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 1333321 1122334433 34554 44444332 35666666544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00087 Score=66.25 Aligned_cols=233 Identities=12% Similarity=0.010 Sum_probs=148.7
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEE-EEEeCCCcEEEEECCCC---CccEEEecCccCCE
Q 011916 222 SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRIL-SSGSRDRNILQHDLRVS---SDYICKLAGHKSEV 295 (475)
Q Consensus 222 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l-~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V 295 (475)
.+|+.+.. ..|+..++........+. ....+..++|+ ...| ++-...+.|..+++... ..............
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEecc-ceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 34555444 678888887665444443 45577889986 3444 44456788888888632 12233333344568
Q ss_pred EEEEEcCC-CCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 296 CGLKWSHD-DRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 296 ~~l~~s~~-~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
.+|++.+. +++.++-...+.|.+.++........+...-.....|++.|.+..|+.+-.| ..+.|...++........
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~-~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS-SSCCEEEEETTSCSCEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC-CCCEEEEEeCCCCccEEE
Confidence 89999884 4455555567889999988665444444344567899999988778877532 347899999865444333
Q ss_pred ecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 375 VDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 375 ~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
+.. -.....|++++++..|+.+ -...+.|..+|+........+.. .-.....|++. .+.++++-...+.|..++.
T Consensus 241 ~~~~l~~P~glavd~~~~~lY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~ 318 (400)
T 3p5b_L 241 VTENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR 318 (400)
T ss_dssp ECSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEES
T ss_pred EECCCCceEEEEEEeCCCEEEEE-ECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEc
Confidence 333 3578899999988888875 44578899999865443333322 23445677773 3345555556678888886
Q ss_pred CCCCCCCC
Q 011916 452 FPSLKAPA 459 (475)
Q Consensus 452 ~~~~~~~~ 459 (475)
.++.....
T Consensus 319 ~~G~~~~~ 326 (400)
T 3p5b_L 319 LTGSDVNL 326 (400)
T ss_dssp SSCCCCEE
T ss_pred CCCCceEE
Confidence 66655443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=0.00016 Score=72.34 Aligned_cols=234 Identities=7% Similarity=-0.035 Sum_probs=141.0
Q ss_pred cEEEEEEcCC--CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCC---C-cEEEEECCCCC
Q 011916 211 SVCSVQWTRE--GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRD---R-NILQHDLRVSS 282 (475)
Q Consensus 211 ~V~~v~~spd--g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d---g-~I~iwd~~~~~ 282 (475)
....|+|+|+ +..|+++...+.|+.+|..+++..... ........++++ ++++++.... . .+...+.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence 4568999984 445666655489999998877765544 344567788884 5644443321 1 23333332111
Q ss_pred ccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEE-ec-cccceeEEEECCCCCcEEEEecCCCCC
Q 011916 283 DYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRL-TE-HTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 283 ~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~-~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
.....+. ......++++++ ++.++++-..++.|+.+|..++.....+ .. ....-..|+|+|++..|+++-. ..+
T Consensus 219 ~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~--~~~ 295 (433)
T 4hw6_A 219 TERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYN--GKH 295 (433)
T ss_dssp CCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEET--TTT
T ss_pred ecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeC--CCC
Confidence 1111111 223456788999 6766666556788999999877652222 21 1122346999999997887754 678
Q ss_pred eEEEEECC--CCcee--eee-cC---------------CCCeeEEEE---------cCCCCeEEEEEecCCCeEEEEECC
Q 011916 360 CIRFWNTS--NGHQL--NSV-DT---------------GSQVCNLAW---------SKNVNELVSTHGYSQNQIMVWKYP 410 (475)
Q Consensus 360 ~I~iwd~~--~~~~~--~~~-~~---------------~~~v~~l~~---------s~~~~~l~~~~g~~dg~I~iwd~~ 410 (475)
.|+.++.. ++... ..+ .. -.....+++ .+++..+++ -...+.|+.++.
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyva--D~~n~~I~~~~~- 372 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFC--DRDSHTVRVLTP- 372 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEE--ETTTTEEEEECT-
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEE--ECCCCEEEEECC-
Confidence 99998865 33211 111 10 123566888 666666555 667788999984
Q ss_pred CCceEEEecCC------------------CcceEEEEEC-CCCCEEEEEeCCCCEEEEecC
Q 011916 411 SMAKVSTLTGH------------------SLRVLYLATS-PDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 411 ~~~~~~~l~~h------------------~~~V~~l~~s-pdg~~l~s~s~Dg~I~iW~~~ 452 (475)
++. +.++.+. -.....|+++ ++|.++++-.....|+.++++
T Consensus 373 ~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 553 3333221 1236789999 677666666667788887764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=98.31 E-value=3.3e-06 Score=89.95 Aligned_cols=244 Identities=11% Similarity=-0.054 Sum_probs=146.0
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCC----CeeeEEecCCCCce
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQ----CKRVRTFGGHQTRA 254 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~----~~~~~~~~~h~~~v 254 (475)
.+|..+..+.|+..++.+.+...+.. ....+..|+|.+.+..|+... ..+.|+.+++.. ......+.......
T Consensus 378 ~~ll~~~~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P 455 (699)
T 1n7d_A 378 AYLFFTNRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 455 (699)
T ss_dssp CCBCCCCTTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--C
T ss_pred eeEEecCccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCc
Confidence 34445556788888888877655542 334567899998766666554 457899999875 22222222111223
Q ss_pred EEEEe--C-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEE
Q 011916 255 GVLAW--N-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN--DNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 255 ~~l~~--~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~--Dg~I~iwd~~~~~~~~~ 329 (475)
..|++ . ++++++-...+.|.++++.. ......+.........|++.|.+.+|+.+.. .+.|.++++........
T Consensus 456 ~glavD~~~g~LY~tD~~~~~I~v~d~dg-~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l 534 (699)
T 1n7d_A 456 DGLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 534 (699)
T ss_dssp CCEECCCSSSBCEECCTTTSCEEEEBSSS-CCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred ceEEEEeeCCcEEEEeccCCeEEEEecCC-CceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence 34554 3 35555556678899999863 2222222222345678899986655555442 26788888764332222
Q ss_pred EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeEEE
Q 011916 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 330 ~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 406 (475)
+...-.....|+|+|++..|+++-. ..+.|..+++........+.. ......|++.. ..|+.+ ....+.|..
T Consensus 535 ~~~~l~~PnGlavd~~~~~LY~aD~--~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~--~~lywt-d~~~~~V~~ 609 (699)
T 1n7d_A 535 VTENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWT-DIINEAIFS 609 (699)
T ss_dssp SCSSCSSCCCEEECTTTCCEEEEET--TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEET--TEEEEE-CSTTTCEEE
T ss_pred EeCCCCCccEEEEeccCCEEEEEec--CCCeEEEEccCCCceEEEEecCCcCCCceEeEEEC--CEEEEE-eCCCCeEEE
Confidence 2222345678999999888888765 678999999865433322221 12345566644 355554 456789999
Q ss_pred EECCCCceEEEecCCCcceEEEEEC
Q 011916 407 WKYPSMAKVSTLTGHSLRVLYLATS 431 (475)
Q Consensus 407 wd~~~~~~~~~l~~h~~~V~~l~~s 431 (475)
++..+++.+..+.........|++.
T Consensus 610 ~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 610 ANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp EETTTEEEEECCCTTCSSCCCCCBC
T ss_pred EEccCCCceEEeecCCCCCcEEEEe
Confidence 9988888777765433344455443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.9e-05 Score=82.22 Aligned_cols=259 Identities=14% Similarity=0.048 Sum_probs=141.8
Q ss_pred EEECCCCcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCC-----------eEEEEECCCCeee--EEecC-CCCceEE
Q 011916 192 LWTASNSKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLG-----------QVQVWDGTQCKRV--RTFGG-HQTRAGV 256 (475)
Q Consensus 192 lw~~~~~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg-----------~v~iwd~~~~~~~--~~~~~-h~~~v~~ 256 (475)
.+|..+++...+..+.. .-.++++.+ +|++++.|+.+. .+.+||..+++.. ..+.. +.....+
T Consensus 170 ~~dp~~~~W~~~~~~P~--~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~ 247 (656)
T 1k3i_A 170 APQPGLGRWGPTIDLPI--VPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPG 247 (656)
T ss_dssp CCCTTSCEEEEEEECSS--CCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCE
T ss_pred cCCCCCCeeeeeccCCC--CceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcccc
Confidence 34445555555554432 122556777 888888887643 5889998876532 23322 2233323
Q ss_pred EE--eCCCEEEEEeC-CCcEEEEECCCCCccEEEecCc-cCCEEEEEEcCCCCEEEEEe-CC-----CcEEEEECCCCce
Q 011916 257 LA--WNSRILSSGSR-DRNILQHDLRVSSDYICKLAGH-KSEVCGLKWSHDDRELASGG-ND-----NQLLVWNQHSQQP 326 (475)
Q Consensus 257 l~--~~~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~lasg~-~D-----g~I~iwd~~~~~~ 326 (475)
++ .++.+++.|+. +..+.+||.... .....-..+ ...-.++...+++++++.|+ .+ ..+.+||..+.+-
T Consensus 248 ~~~~~~g~lyv~GG~~~~~v~~yd~~t~-~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 248 ISMDGNGQIVVTGGNDAKKTSLYDSSSD-SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp EEECTTSCEEEECSSSTTCEEEEEGGGT-EEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred ccCCCCCCEEEeCCCCCCceEEecCcCC-ceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 33 47889999884 568999998733 222211111 11123455667899999998 44 5799999987653
Q ss_pred eEEE----eccccceeEEEECCCCCcEEEEecC-------CCCCeEEEEECCCCceeeeecCC----------CCeeEEE
Q 011916 327 TLRL----TEHTAAVKAIAWSPHQSSLLASGGG-------TADRCIRFWNTSNGHQLNSVDTG----------SQVCNLA 385 (475)
Q Consensus 327 ~~~~----~~h~~~v~~l~~sp~~~~ll~sg~G-------s~d~~I~iwd~~~~~~~~~~~~~----------~~v~~l~ 385 (475)
...- ......-....+..++. +++.|+. .....+..||..+.......... ..-.++.
T Consensus 327 ~~~~~~~~~p~~~~~~~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 327 TSLPNAKVNPMLTADKQGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EEETTSCSGGGCCCCTTGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eeCCCccccccccccccceeecCCc-eEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 3210 00000000011223333 4444430 01346788998876644322111 1234444
Q ss_pred EcCCCCeEEEEEecCCC-----------eEEEEECCCCceEEEe--cCCCcce-EEEEECCCCCEEEEEeCC--------
Q 011916 386 WSKNVNELVSTHGYSQN-----------QIMVWKYPSMAKVSTL--TGHSLRV-LYLATSPDGQTIVTGAGD-------- 443 (475)
Q Consensus 386 ~s~~~~~l~~~~g~~dg-----------~I~iwd~~~~~~~~~l--~~h~~~V-~~l~~spdg~~l~s~s~D-------- 443 (475)
|...+..|++. |..++ .|.+||..+.+..... ..+..+. .+++..++|++++.|+.+
T Consensus 406 ~~~~~~~i~v~-GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~ 484 (656)
T 1k3i_A 406 YDAVKGKILTF-GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDS 484 (656)
T ss_dssp EETTTTEEEEE-CCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCC
T ss_pred ccCCCCeEEEE-eCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCC
Confidence 54434445444 44321 6788888776654433 2233343 345677899999998864
Q ss_pred ---CCEEEEecCCCC
Q 011916 444 ---ETLRFWNVFPSL 455 (475)
Q Consensus 444 ---g~I~iW~~~~~~ 455 (475)
..+.+||.....
T Consensus 485 ~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 485 TPVFTPEIYVPEQDT 499 (656)
T ss_dssp SBCCCCEEEEGGGTE
T ss_pred CcccceEEEcCCCCc
Confidence 467889876543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0033 Score=57.78 Aligned_cols=197 Identities=11% Similarity=0.165 Sum_probs=128.4
Q ss_pred EecCCCCceEEEEeC--CC-EEEEEeCCCcEEEEECCCCCccEEEec-CccCCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 246 TFGGHQTRAGVLAWN--SR-ILSSGSRDRNILQHDLRVSSDYICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 246 ~~~~h~~~v~~l~~~--~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
.+.+-...+..++|+ ++ ++++...++.|...|.. +..+..+. .-.....+|++.+++.++++.-.++.+.++++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 455666789999996 34 55567788889888886 55555543 22356889999998877677666788999988
Q ss_pred CCCcee---EEEe------ccccceeEEEECCCCCcEEEEecCCCCC-eEEEEEC-CCCceeeeec--------CCCCee
Q 011916 322 HSQQPT---LRLT------EHTAAVKAIAWSPHQSSLLASGGGTADR-CIRFWNT-SNGHQLNSVD--------TGSQVC 382 (475)
Q Consensus 322 ~~~~~~---~~~~------~h~~~v~~l~~sp~~~~ll~sg~Gs~d~-~I~iwd~-~~~~~~~~~~--------~~~~v~ 382 (475)
.....+ .... ........|+|.|.+..|+++.. .+. .|+.|+- .....+..+. .-..+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E--~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKE--KNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEE--SSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEEC--cCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 654422 2221 12345689999999987877653 333 5666651 1111122221 123578
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC---------cceEEEEECCCCCEEEEEeCCCCEEEE
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS---------LRVLYLATSPDGQTIVTGAGDETLRFW 449 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~---------~~V~~l~~spdg~~l~s~s~Dg~I~iW 449 (475)
.++++|....+++. ....+.|.++|.. ++.+..+.-.. ..-..|+|.++|+..++ ++-..++.+
T Consensus 177 ~l~~dp~tg~lliL-S~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 177 GAEFNQQKNTLLVL-SHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF 249 (255)
T ss_dssp EEEEETTTTEEEEE-ETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred eEEEcCCCCeEEEE-ECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence 99999988887776 5678899999965 44554443221 25689999999985555 666544444
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.20 E-value=0.0014 Score=66.08 Aligned_cols=241 Identities=9% Similarity=-0.021 Sum_probs=143.5
Q ss_pred cEEEEEEcC-CCCEEEEEeC-CCeEEEEECCCCeeeEEecCC---CCceEEEEe-------C--CCEEEEEeCCC-----
Q 011916 211 SVCSVQWTR-EGSYISVGTN-LGQVQVWDGTQCKRVRTFGGH---QTRAGVLAW-------N--SRILSSGSRDR----- 271 (475)
Q Consensus 211 ~V~~v~~sp-dg~~la~g~~-dg~v~iwd~~~~~~~~~~~~h---~~~v~~l~~-------~--~~~l~sgs~dg----- 271 (475)
....|+|.| ++..|+++.. .+.|++.|++++......... ......++| + ++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 3555555544 467999998887776655432 235788888 4 56566665543
Q ss_pred --cEEEEECCCCCccE-----EEecCccCCEEEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCce----------
Q 011916 272 --NILQHDLRVSSDYI-----CKLAGHKSEVCGLKWSHD-DRELASGGNDNQLLVWNQH-------SQQP---------- 326 (475)
Q Consensus 272 --~I~iwd~~~~~~~~-----~~~~~h~~~V~~l~~s~~-~~~lasg~~Dg~I~iwd~~-------~~~~---------- 326 (475)
.|.+.+....+... ..+... ....+++++|+ +.++++-..++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence 26666544212221 222221 23457788994 5555566677889999987 4443
Q ss_pred -eEE-Ee-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC--CCCcee--eee-cC---C------------CCee-
Q 011916 327 -TLR-LT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT--SNGHQL--NSV-DT---G------------SQVC- 382 (475)
Q Consensus 327 -~~~-~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~--~~~~~~--~~~-~~---~------------~~v~- 382 (475)
... +. ........|+|+|++..|+++-. ....|+.++. .++... ..+ .. . ....
T Consensus 299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~--~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVI--NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TEEEEEECSSSSCCEEEEECTTSSEEEEEET--TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccceeEecCCCCCceEEEEcCCCCEEEEEeC--CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 112 21 12344578999999997777654 6788998654 333220 111 10 0 1233
Q ss_pred EEEEc-------CCCCeEEEEEecCCCeEEEEECCCCceEEEecCC------------------------CcceEEEEEC
Q 011916 383 NLAWS-------KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH------------------------SLRVLYLATS 431 (475)
Q Consensus 383 ~l~~s-------~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h------------------------~~~V~~l~~s 431 (475)
.++.. .++..+++ -..++.|+.++ +++. +.++-+. -.....|+++
T Consensus 377 gv~vd~~~~~~~~~g~lyVa--D~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFV--DRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEE--EGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred EEEEccccccccCCCeEEEE--ECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 34443 34555554 66788999998 4553 4444221 1236789999
Q ss_pred CC-CCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 432 PD-GQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 432 pd-g~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
++ |.++++=.....||.+++.......
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence 97 7666666677889999988766544
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00093 Score=66.73 Aligned_cols=228 Identities=8% Similarity=0.065 Sum_probs=131.1
Q ss_pred eEEecCC---CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-C----eEEEEECCCCee
Q 011916 172 NLVDWSS---QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-G----QVQVWDGTQCKR 243 (475)
Q Consensus 172 ~~l~ws~---~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-g----~v~iwd~~~~~~ 243 (475)
..++++| ++|+++...+.|+.+|..++.+..+.. .......|+|+++|++|+++... + .+.+++. .+..
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~ 216 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGF 216 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTS
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCce
Confidence 4467775 356666556889999999888766653 45678899999999977666542 2 2343443 2222
Q ss_pred e--EEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEE-ecCccCCEEEEEEcCCCCEEEEE-eCCCcE
Q 011916 244 V--RTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICK-LAGHKSEVCGLKWSHDDRELASG-GNDNQL 316 (475)
Q Consensus 244 ~--~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~~~~~lasg-~~Dg~I 316 (475)
. ..+.. ......++++ +.++++-..++.|..++... ...... ..........|+|+|+|++|+.+ ...+.|
T Consensus 217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~-~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I 294 (430)
T 3tc9_A 217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTT-QETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI 294 (430)
T ss_dssp CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTT-TEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCC-CcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence 1 22221 1223445553 45666666778899999873 322111 11222456789999999955554 456789
Q ss_pred EEEECCC--Cce--eEEEecc---------------cccee-EEEEC--------CCCCcEEEEecCCCCCeEEEEECCC
Q 011916 317 LVWNQHS--QQP--TLRLTEH---------------TAAVK-AIAWS--------PHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 317 ~iwd~~~--~~~--~~~~~~h---------------~~~v~-~l~~s--------p~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
..++... +.. +..+.+. -.... .++.. +++. |+++-. ..+.|+.++ .+
T Consensus 295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~--~n~~I~~i~-~~ 370 (430)
T 3tc9_A 295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDR--ENHCIRILT-PQ 370 (430)
T ss_dssp EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEG--GGTEEEEEC-TT
T ss_pred EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEEC--CCcEEEEEC-CC
Confidence 9987653 221 2222211 00122 44443 2343 555543 567888888 45
Q ss_pred CceeeeecC---------C---------CCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 369 GHQLNSVDT---------G---------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 369 ~~~~~~~~~---------~---------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
|........ . .....+++++++..|+++ ...++.|+.++.
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa-D~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIG-DRENRRIRKIGY 428 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEE-EGGGTEEEEEEE
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEE-ECCCCeEEEEcc
Confidence 544333321 1 147788999854455543 555677777764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.0017 Score=68.01 Aligned_cols=231 Identities=10% Similarity=-0.014 Sum_probs=136.6
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCee-eEEecCCCCceEEE
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKR-VRTFGGHQTRAGVL 257 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~-~~~~~~h~~~v~~l 257 (475)
-++.-+....|+..++.............-..+..|+|++.+..|+.+. ..+.|..+++..... ...+...-.....+
T Consensus 10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl 89 (619)
T 3s94_A 10 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 89 (619)
T ss_dssp CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred ceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence 3566667788888888765322222223456688999999666666554 467899999876532 22333332455666
Q ss_pred EeC--C-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEEec
Q 011916 258 AWN--S-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN--DNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 258 ~~~--~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~--Dg~I~iwd~~~~~~~~~~~~ 332 (475)
+++ + +++++-...+.|.+.++.. ..........-....+|++.|.+..|+.... .+.|...++...........
T Consensus 90 AvD~~~~~ly~~d~~~~~I~v~~~dG-~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 90 ACDWLGEKLYWTDSETNRIEVSNLDG-SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred EEEecCCEEEEEeCCCCEEEEEECCC-CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC
Confidence 653 4 4555556778999999873 2222233234455778999997666665553 35777777765443333333
Q ss_pred cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 333 HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 333 h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
.-.....|++.+++..|+.+-. ..+.|..+|+.......... .......+++..+ .|+.+ ....+.|...|..+
T Consensus 169 ~~~~P~Glald~~~~~LY~aD~--~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~t-d~~~~~V~~~d~~t 243 (619)
T 3s94_A 169 EIYWPNGLTLDYEEQKLYWADA--KLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWT-DWSTHSILACNKYT 243 (619)
T ss_dssp SCSSEEEEEEETTTTEEEEEET--TTCCEEEESSSCCEEC---------CCCEEESSS--EEEEE-CTTTCSEEEEESSS
T ss_pred CCCCCcEEEEEccCCEEEEEeC--CCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEe-cCCCCEEEEEECCC
Confidence 3456789999998888888765 67889999986543332222 1223456777655 55553 55677888888876
Q ss_pred CceEE
Q 011916 412 MAKVS 416 (475)
Q Consensus 412 ~~~~~ 416 (475)
++...
T Consensus 244 g~~~~ 248 (619)
T 3s94_A 244 GEGLR 248 (619)
T ss_dssp CCCCE
T ss_pred CcccE
Confidence 65433
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.001 Score=63.65 Aligned_cols=191 Identities=12% Similarity=0.187 Sum_probs=126.1
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe------CCC---EEEEEeC---CCcEEEEECCCCCccEEEe
Q 011916 221 GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW------NSR---ILSSGSR---DRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 221 g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~------~~~---~l~sgs~---dg~I~iwd~~~~~~~~~~~ 288 (475)
..+++.....+-+.+||+ +++.+..+.. +++..+.. .+. ++++..+ +.+|.+|++......+..+
T Consensus 40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 345555566788999999 8888888864 44444443 332 3344444 4789999885333334444
Q ss_pred cC------cc-CCEEEEEE--cCC-CC-EEEEEeCCCcEEEEECC-------CCceeEEEeccccceeEEEECCCCCcEE
Q 011916 289 AG------HK-SEVCGLKW--SHD-DR-ELASGGNDNQLLVWNQH-------SQQPTLRLTEHTAAVKAIAWSPHQSSLL 350 (475)
Q Consensus 289 ~~------h~-~~V~~l~~--s~~-~~-~lasg~~Dg~I~iwd~~-------~~~~~~~~~~h~~~v~~l~~sp~~~~ll 350 (475)
.. .. ..+.++++ ++. +. ++++...+|.+..|++. +.+.+.+|.- ...+..++..+....|+
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Ly 195 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLY 195 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEE
Confidence 21 11 56777787 674 44 68888889999999983 2344556553 46788999998888777
Q ss_pred EEecCCCCCeEEEEECC-----CCceeeeecCC---CCeeEEEE--cCCCC-eEEEEEecCCCeEEEEECC-CCceEEEe
Q 011916 351 ASGGGTADRCIRFWNTS-----NGHQLNSVDTG---SQVCNLAW--SKNVN-ELVSTHGYSQNQIMVWKYP-SMAKVSTL 418 (475)
Q Consensus 351 ~sg~Gs~d~~I~iwd~~-----~~~~~~~~~~~---~~v~~l~~--s~~~~-~l~~~~g~~dg~I~iwd~~-~~~~~~~l 418 (475)
+.- ++.-|..++.. +++.+..+..+ ..+..|++ .++++ +|+++ +-.++.+.+||.. +.+.+..+
T Consensus 196 v~e---Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivS-sQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 196 IAE---EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMAS-SQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEE---TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEE-EGGGTEEEEEESSTTCCEEEEE
T ss_pred Eec---ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEE-cCCCCEEEEEECCCCCcEEEEE
Confidence 754 67667777755 34556555433 46888888 45566 66664 4467899999996 67777777
Q ss_pred c
Q 011916 419 T 419 (475)
Q Consensus 419 ~ 419 (475)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0014 Score=65.38 Aligned_cols=228 Identities=9% Similarity=0.041 Sum_probs=128.2
Q ss_pred eeEEecCC----CCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC----e-EEEEECCCC
Q 011916 171 LNLVDWSS----QNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG----Q-VQVWDGTQC 241 (475)
Q Consensus 171 v~~l~ws~----~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg----~-v~iwd~~~~ 241 (475)
...++|++ ++|+.+...+.|+.++..++.+..+. .......+++|+++|+ |+++...+ . +...+...+
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence 34578886 24444444489999999888877665 3456789999999999 55554322 1 333332211
Q ss_pred ee-eEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCcc-EEEec-CccCCEEEEEEcCCCCEEEEE-eCCC
Q 011916 242 KR-VRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDY-ICKLA-GHKSEVCGLKWSHDDRELASG-GNDN 314 (475)
Q Consensus 242 ~~-~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~-~~~~~-~h~~~V~~l~~s~~~~~lasg-~~Dg 314 (475)
.. ...+. .-.....++++ +.++++-..++.|..+|... +.. ...+. +....-..|+|+|+++.|+.+ ...+
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~-g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT-GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT-CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC-CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 11 01111 11223344453 45555555677888888762 332 11111 112233579999999955555 4567
Q ss_pred cEEEEECCC--Cce--eEEEecc---------------ccceeEEEE---------CCCCCcEEEEecCCCCCeEEEEEC
Q 011916 315 QLLVWNQHS--QQP--TLRLTEH---------------TAAVKAIAW---------SPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 315 ~I~iwd~~~--~~~--~~~~~~h---------------~~~v~~l~~---------sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.|+.++... +.. ...+.+. -.....+++ .+++. |+++-. ..+.|+.++.
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~-lyvaD~--~n~~I~~~~~ 372 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYD-FYFCDR--DSHTVRVLTP 372 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEE-EEEEET--TTTEEEEECT
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCc-EEEEEC--CCCEEEEECC
Confidence 899988652 321 1222221 123567888 66665 666543 6788999985
Q ss_pred CCCceeeeecCC------------------CCeeEEEEc-CCCCeEEEEEecCCCeEEEEEC
Q 011916 367 SNGHQLNSVDTG------------------SQVCNLAWS-KNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 367 ~~~~~~~~~~~~------------------~~v~~l~~s-~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
+|........+ .....|+++ +++..+++ -..++.|+.+++
T Consensus 373 -~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVa--D~~n~rIr~i~~ 431 (433)
T 4hw6_A 373 -EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIG--DCDNHRVRKIAP 431 (433)
T ss_dssp -TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEE--EGGGTEEEEEEE
T ss_pred -CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEE--eCCCCEEEEEec
Confidence 55433322111 236678888 44444444 455667777765
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0045 Score=66.51 Aligned_cols=230 Identities=12% Similarity=0.028 Sum_probs=143.9
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCC---CccEEEecCccCCEE
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVS---SDYICKLAGHKSEVC 296 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~---~~~~~~~~~h~~~V~ 296 (475)
+|+.... ..|+..++........+. ....+..|+|+ +.++++-...+.|+.+++... ......+........
T Consensus 397 ~Ll~an~-~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~ 474 (791)
T 3m0c_C 397 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 474 (791)
T ss_dssp EEEEECB-SSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred ccccccc-cceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence 4444443 568888877655444443 34566788885 345555566788888888632 122333443445677
Q ss_pred EEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 297 GLKWSHDDRELA-SGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 297 ~l~~s~~~~~la-sg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
+|++.+.++.|+ +-...+.|.+.++........+...-....+|++.|.+..|+.+-.| ..+.|...++........+
T Consensus 475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~dG~~~~~lv 553 (791)
T 3m0c_C 475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 553 (791)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEEEEE
T ss_pred eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEecCCCceEEEE
Confidence 899988665555 44566899999998655433333344568899999987778887532 2378999998755544444
Q ss_pred cCC-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCEEEEE-eCCCCEEEEec
Q 011916 376 DTG-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQTIVTG-AGDETLRFWNV 451 (475)
Q Consensus 376 ~~~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~s~-s~Dg~I~iW~~ 451 (475)
... .....|++.+.+..|+.+ -...+.|..+++........+.. .-.....|++. +..|+.+ ...+.|...+.
T Consensus 554 ~~~l~~P~GLavD~~~~~LYwa-D~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk 630 (791)
T 3m0c_C 554 TENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANR 630 (791)
T ss_dssp CSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEET
T ss_pred eCCCCCceEEEEecCCCeEEEE-eCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeC
Confidence 333 578899999888888875 44567899999865544443332 22345567763 3345444 45567777776
Q ss_pred CCCCCCC
Q 011916 452 FPSLKAP 458 (475)
Q Consensus 452 ~~~~~~~ 458 (475)
.++....
T Consensus 631 ~tG~~~~ 637 (791)
T 3m0c_C 631 LTGSDVN 637 (791)
T ss_dssp TTCCCCE
T ss_pred CCCcceE
Confidence 6665443
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0055 Score=64.15 Aligned_cols=230 Identities=11% Similarity=0.022 Sum_probs=147.8
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEeC---CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEE
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAWN---SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGL 298 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 298 (475)
+|+.+ ....|+..++++......+. ..-..+..++|+ +.++++-..++.|..+++.. ......+........+|
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g-~~~~~v~~~g~~~P~Gl 85 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG-SALEHVVEFGLDYPEGM 85 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECSSCSCCCEE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC-CCcEEEEeCCCCCcceE
Confidence 45554 44689999998765433332 223467788885 34555556778999998873 23333333333457788
Q ss_pred EEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC
Q 011916 299 KWSHDDREL-ASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377 (475)
Q Consensus 299 ~~s~~~~~l-asg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~ 377 (475)
++.+.+..| ++-...+.|.+.++........+...-....+|++.|....|+.+--| ..+.|...++...........
T Consensus 86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~dG~~~~~l~~~ 164 (628)
T 4a0p_A 86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSERTTLVPN 164 (628)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECS
T ss_pred EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeCCCCceEEEECC
Confidence 888765555 444556789999987654333333344567899999977778877521 357888888876554444455
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
......|+++++++.|+.+ -...+.|..+|+..... ..+........+|++.. +..+++-...+.|...|..++...
T Consensus 165 ~~~P~GlalD~~~~~LY~a-D~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~ 241 (628)
T 4a0p_A 165 VGRANGLTIDYAKRRLYWT-DLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR 241 (628)
T ss_dssp CSSEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred CCCcceEEEccccCEEEEE-ECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence 5678899999998888875 44678899999865443 23333334456787754 344444445778888887666544
Q ss_pred C
Q 011916 458 P 458 (475)
Q Consensus 458 ~ 458 (475)
.
T Consensus 242 ~ 242 (628)
T 4a0p_A 242 T 242 (628)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0012 Score=63.22 Aligned_cols=182 Identities=11% Similarity=0.192 Sum_probs=121.4
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC----CC---EEEEEe-C--CCcEEEEECC-CCceeEEE
Q 011916 262 RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD----DR---ELASGG-N--DNQLLVWNQH-SQQPTLRL 330 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~----~~---~lasg~-~--Dg~I~iwd~~-~~~~~~~~ 330 (475)
.+++.....+-+.+||+ .++.++.+.. +.+..+..-|+ |+ ++++.. . +++|.+|++. ....+..+
T Consensus 41 s~ii~t~k~~gL~Vydl--~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i 116 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL--DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM 116 (355)
T ss_dssp CEEEEEETTTEEEEEET--TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred cEEEEEcCCCCEEEEcC--CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence 56666777889999999 4666666653 55676666552 22 223333 3 5789999774 22234444
Q ss_pred ec------cc-cceeEEEE--CCC-CC-cEEEEecCCCCCeEEEEECC-------CCceeeeecCCCCeeEEEEcCCCCe
Q 011916 331 TE------HT-AAVKAIAW--SPH-QS-SLLASGGGTADRCIRFWNTS-------NGHQLNSVDTGSQVCNLAWSKNVNE 392 (475)
Q Consensus 331 ~~------h~-~~v~~l~~--sp~-~~-~ll~sg~Gs~d~~I~iwd~~-------~~~~~~~~~~~~~v~~l~~s~~~~~ 392 (475)
.. .. ..+..+++ +|. +. +++++. .++.+..|++. +++.++.+..++++..+...+....
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~---k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG---KEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGR 193 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTE
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC---CCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCe
Confidence 21 11 55677888 775 44 344443 68999999882 3467788888999999999999999
Q ss_pred EEEEEecCCCeEEEEECC-----CCceEEEec-CC-CcceEEEEE--CCCCC-EEEEEe-CCCCEEEEecC
Q 011916 393 LVSTHGYSQNQIMVWKYP-----SMAKVSTLT-GH-SLRVLYLAT--SPDGQ-TIVTGA-GDETLRFWNVF 452 (475)
Q Consensus 393 l~~~~g~~dg~I~iwd~~-----~~~~~~~l~-~h-~~~V~~l~~--spdg~-~l~s~s-~Dg~I~iW~~~ 452 (475)
|++ +.++..|..|+.. +++.+..+. ++ ...+..|++ .++++ +|++++ .+.++.+|+..
T Consensus 194 Lyv--~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEE--EETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEE--ecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 999 7777777777754 345555553 22 236888887 56666 566555 67799999996
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0028 Score=61.39 Aligned_cols=222 Identities=14% Similarity=0.190 Sum_probs=122.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--eEEec---CCCCceEEEEeCCC-----EEEEEeCC------CcE
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR--VRTFG---GHQTRAGVLAWNSR-----ILSSGSRD------RNI 273 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~--~~~~~---~h~~~v~~l~~~~~-----~l~sgs~d------g~I 273 (475)
.....++|.|+|+ |+++..+|.|.+++ +++. +..+. ........++++++ .|+.+... ..|
T Consensus 31 ~~P~~ia~~pdG~-l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGG-MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSC-EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCe-EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4567999999998 45556679999998 4432 22221 22346788898653 55555432 567
Q ss_pred EEEECCCCC----c-cEEEec---CccCCEEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC--------
Q 011916 274 LQHDLRVSS----D-YICKLA---GHKSEVCGLKWSHDDRELASGGN-------------DNQLLVWNQHSQ-------- 324 (475)
Q Consensus 274 ~iwd~~~~~----~-~~~~~~---~h~~~V~~l~~s~~~~~lasg~~-------------Dg~I~iwd~~~~-------- 324 (475)
..++..... + .+..+. ........|+|.|||.+.++.+. .+.|.-++....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 777775221 1 111132 11123468999999976666432 145666665430
Q ss_pred -----ceeEEEeccccceeEEEECCCCCcEEEEecCCCCC-------eEEEEECCCCc------------------eeee
Q 011916 325 -----QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR-------CIRFWNTSNGH------------------QLNS 374 (475)
Q Consensus 325 -----~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~-------~I~iwd~~~~~------------------~~~~ 374 (475)
.......++ .....++|+|+...|+++-.| .+. .|.+.. .+. ++..
T Consensus 188 ~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g-~~~~~~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~ 263 (352)
T 2ism_A 188 GRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHG-PSGEQGYGHDEVNLIV--PGGNYGWPRVVGRGNDPRYRDPLYF 263 (352)
T ss_dssp TCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEEC-C------CCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEE
T ss_pred CCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcC-CCCCCCCCCeEEEEec--cCCcCCCCcccCCCCCCCCcCCeEe
Confidence 111111223 235789999943336655432 222 244332 221 2222
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------EEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 375 VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK------VSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 375 ~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~------~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
+........++| .+|..+++ ....+.|...++..... ...+..-..++..+++.|||.++++..
T Consensus 264 ~~~~~ap~G~~~-~~G~l~v~--~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 264 WPQGFPPGNLAF-FRGDLYVA--GLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp CTTCCCEEEEEE-ETTEEEEE--ETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred cCCCCCCcceEE-ECCEEEEE--ECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence 233345667777 35555554 55677888887754321 122222346789999999998777654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.014 Score=56.47 Aligned_cols=226 Identities=12% Similarity=0.132 Sum_probs=126.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe-eeEEec---CCCCceEEEEeCC-----CEEEEEeC----C----Cc
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK-RVRTFG---GHQTRAGVLAWNS-----RILSSGSR----D----RN 272 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~-~~~~~~---~h~~~v~~l~~~~-----~~l~sgs~----d----g~ 272 (475)
.....++|.|+|+ |+++..+|.|.+++ .+++ .+..+. ........|++++ ..|+++.. + ..
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 4578999999998 55556669999997 4454 222221 2234678889864 35555443 2 56
Q ss_pred EEEEECCCCC------ccE-EEecC-ccCCEEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC-------
Q 011916 273 ILQHDLRVSS------DYI-CKLAG-HKSEVCGLKWSHDDRELASGGN-------------DNQLLVWNQHSQ------- 324 (475)
Q Consensus 273 I~iwd~~~~~------~~~-~~~~~-h~~~V~~l~~s~~~~~lasg~~-------------Dg~I~iwd~~~~------- 324 (475)
|..++..... +.+ ..+.. .......|.|.|||.++++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 7777765321 111 11221 1123467999999987766432 145666665432
Q ss_pred -c-eeEEEeccccceeEEEECCCCCcEEEEecCCCC-CeEEEEECCC--------C--------ceeeee-cCCCCeeEE
Q 011916 325 -Q-PTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD-RCIRFWNTSN--------G--------HQLNSV-DTGSQVCNL 384 (475)
Q Consensus 325 -~-~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d-~~I~iwd~~~--------~--------~~~~~~-~~~~~v~~l 384 (475)
. .+. ..++. ....++|+|+...|+++-.|... ..|.+...-. + .++..+ ........+
T Consensus 187 ~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~ 264 (354)
T 3a9g_A 187 PNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA 264 (354)
T ss_dssp TTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred CCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence 1 122 12333 34689999943346665432111 2233332110 0 122223 234567888
Q ss_pred EEc-------CCCCeEEEEEecCCCeEEEEECCCC-ceE--EEe-cCCCcceEEEEECCCCCEEEEEe
Q 011916 385 AWS-------KNVNELVSTHGYSQNQIMVWKYPSM-AKV--STL-TGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 385 ~~s-------~~~~~l~~~~g~~dg~I~iwd~~~~-~~~--~~l-~~h~~~V~~l~~spdg~~l~s~s 441 (475)
+|. .+|..+++ ....+.|...++... +.. ..+ .+-..++..+++.|||.++++..
T Consensus 265 ~~y~g~~fp~~~G~l~v~--~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 265 SFVHGDMFPGLRGWLLIA--CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EECCSSSCGGGTTEEEEE--ETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred EEECCCCCcccCCcEEEE--EcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 884 45655555 567788998888753 221 233 23356799999999998777664
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=97.88 E-value=0.05 Score=60.95 Aligned_cols=264 Identities=8% Similarity=0.053 Sum_probs=152.6
Q ss_pred EEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCC------CCEEEEEeC-CCeEEEEECCCCeeeEEecC-CCCc
Q 011916 182 LAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTRE------GSYISVGTN-LGQVQVWDGTQCKRVRTFGG-HQTR 253 (475)
Q Consensus 182 la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spd------g~~la~g~~-dg~v~iwd~~~~~~~~~~~~-h~~~ 253 (475)
++++.++.+.++.+..+++.......-...|.|+++.+. ++++|+|.. |++|+|+++.+.+.+....- ....
T Consensus 526 vvva~g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~ 605 (1158)
T 3ei3_A 526 VVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEII 605 (1158)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCC
T ss_pred EEEEECCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCC
Confidence 333356788888777665544433344678999999863 479999997 99999999987666544321 1123
Q ss_pred eEEEE---eCC-CEEEEEeCCCcEEEEECCCC-CccE---EEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 011916 254 AGVLA---WNS-RILSSGSRDRNILQHDLRVS-SDYI---CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325 (475)
Q Consensus 254 v~~l~---~~~-~~l~sgs~dg~I~iwd~~~~-~~~~---~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~ 325 (475)
..++. +.+ .+|..|-.||.+.-+.+... +... ....+ ..++.-..+...+..-+.+..+....++--+ ++
T Consensus 606 p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~ 683 (1158)
T 3ei3_A 606 PRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HK 683 (1158)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SS
T ss_pred CcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-Cc
Confidence 33333 333 57889999999877766522 2211 12223 3445444444444433333344555555443 22
Q ss_pred eeEEEeccccce-eEEEECCCC--CcEEEEecCCCCCeEEEEECCCC--ceeeeecCCCCeeEEEEcCCCCeEEEEEecC
Q 011916 326 PTLRLTEHTAAV-KAIAWSPHQ--SSLLASGGGTADRCIRFWNTSNG--HQLNSVDTGSQVCNLAWSKNVNELVSTHGYS 400 (475)
Q Consensus 326 ~~~~~~~h~~~v-~~l~~sp~~--~~ll~sg~Gs~d~~I~iwd~~~~--~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~ 400 (475)
....- -....+ ....|+... ..++++ .++.++|..+.+. -.++.+..+..+..++++|..+.+++.+...
T Consensus 684 l~~s~-l~~~~v~~~~~F~se~~~~g~v~~----~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~ 758 (1158)
T 3ei3_A 684 LVFSN-VNLKEVNYMCPLNSDGYPDSLALA----NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRI 758 (1158)
T ss_dssp EEEEE-BSSSCCCEEEEECCSSSTTEEEEE----CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEE
T ss_pred eEEec-cChHHhceEeccCcccCCCcEEEE----cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEec
Confidence 22111 111122 233453321 235544 3566888877543 2445566778899999999888766543211
Q ss_pred -----------------------------------------------CCeEEEEECCCCceEEEecC-CCcceEEEE---
Q 011916 401 -----------------------------------------------QNQIMVWKYPSMAKVSTLTG-HSLRVLYLA--- 429 (475)
Q Consensus 401 -----------------------------------------------dg~I~iwd~~~~~~~~~l~~-h~~~V~~l~--- 429 (475)
.+.|++.|-.+++.+..+.- ....+.+++
T Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~ 838 (1158)
T 3ei3_A 759 EVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCK 838 (1158)
T ss_dssp EEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEEC
T ss_pred cccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEE
Confidence 12477788777777665543 233455554
Q ss_pred ECCC-CCEEEEEe----------CCCCEEEEecC
Q 011916 430 TSPD-GQTIVTGA----------GDETLRFWNVF 452 (475)
Q Consensus 430 ~spd-g~~l~s~s----------~Dg~I~iW~~~ 452 (475)
|..+ ..+|+.|+ ..|.|+++++.
T Consensus 839 ~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 839 LGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp CTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred EccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 3322 46888876 34789999987
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0066 Score=63.46 Aligned_cols=225 Identities=12% Similarity=0.046 Sum_probs=133.3
Q ss_pred CCeEEEEECCCCe-eeEEecCCCCceEEEEeC--CCEEE-EEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC
Q 011916 230 LGQVQVWDGTQCK-RVRTFGGHQTRAGVLAWN--SRILS-SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 230 dg~v~iwd~~~~~-~~~~~~~h~~~v~~l~~~--~~~l~-sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 305 (475)
...|+..++.... ........-.....++|+ +..|+ +-...+.|..+++.........+...-....+|++.+.+.
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence 3678888887543 222222334456778775 44454 4445678888888733222333433335789999998655
Q ss_pred EEEE-EeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeE
Q 011916 306 ELAS-GGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCN 383 (475)
Q Consensus 306 ~las-g~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~ 383 (475)
.|+. -...+.|.+.++........+...-....+|++.|.+..|+.+--| ..+.|...++......... ........
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g-~~~~I~r~~~dG~~~~~l~~~~~~~P~G 175 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGMDGSSRFIIINSEIYWPNG 175 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS-SSCEEEEEETTSCSCEEEECSSCSSEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC-CCCEEEEEECCCCceEEEEeCCCCCCcE
Confidence 5554 4566899999998654333333444567899999987778887532 3467887887644333333 23456789
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 384 LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
|+++++++.|+.+ -...+.|..+|+........+.+.-....+|++..+ ..+++-...+.|...|..++...
T Consensus 176 lald~~~~~LY~a-D~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 176 LTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEEETTTTEEEEE-ETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred EEEEccCCEEEEE-eCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 9999988888775 445678999998654433322222223456777655 34444445678888888776654
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.027 Score=53.65 Aligned_cols=232 Identities=10% Similarity=0.038 Sum_probs=129.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec----CCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG----GHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS 282 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~ 282 (475)
.....+.+|.|.+++..+++| ..|.|. ...+.++.-..+. .....+.++.+++..++.++.++.|.. ....+
T Consensus 33 ~~~~~~~~v~~~~~~~~~~~G-~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~g~i~~--S~DgG 108 (327)
T 2xbg_A 33 PTTATILDMSFIDRHHGWLVG-VNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEPPIMLH--TTDGG 108 (327)
T ss_dssp SCSSCEEEEEESSSSCEEEEE-TTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEETTEEEE--ESSTT
T ss_pred CCCCcEEEEEECCCCcEEEEc-CCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECCCeEEE--ECCCC
Confidence 335679999998877777755 467653 3333343222221 224467888887666666666675543 22223
Q ss_pred ccEEEec---CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEeccccceeEEEECCCCCcEEEEecCCCC
Q 011916 283 DYICKLA---GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP-TLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD 358 (475)
Q Consensus 283 ~~~~~~~---~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~-~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d 358 (475)
+.-.... .+...+..|.+.+++..++++ .++.|+.- ...++. ..........+..+++.+++. +++.+ .+
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~-~~~~g---~~ 182 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGE-YVAVS---SR 182 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSC-EEEEE---TT
T ss_pred CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCc-EEEEE---CC
Confidence 3222222 234567888887777666655 45654332 222322 222234556788999999887 44544 34
Q ss_pred CeEEE-EEC--CCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-C---CCcceEEEEEC
Q 011916 359 RCIRF-WNT--SNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-G---HSLRVLYLATS 431 (475)
Q Consensus 359 ~~I~i-wd~--~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-~---h~~~V~~l~~s 431 (475)
+.+.. +|- .+.+.+. ......+..+.+.+++..+++ + .+|.+++.+...++.-..+. . +...+..+++.
T Consensus 183 G~~~~S~d~gG~tW~~~~-~~~~~~~~~~~~~~~g~~~~~--~-~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~ 258 (327)
T 2xbg_A 183 GSFYSTWEPGQTAWEPHN-RTTSRRLHNMGFTPDGRLWMI--V-NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR 258 (327)
T ss_dssp SSEEEEECTTCSSCEEEE-CCSSSCEEEEEECTTSCEEEE--E-TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES
T ss_pred CcEEEEeCCCCCceeECC-CCCCCccceeEECCCCCEEEE--e-CCceEEEecCCCCCeeEeccCCcccCCcceEEEEec
Confidence 44443 342 2333332 234467888999998876655 3 56777776432233222222 1 22358899999
Q ss_pred CCCCEEEEEeCCCCEEEEecCCC
Q 011916 432 PDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 432 pdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
+++..++++ .+|.| ++..+.+
T Consensus 259 ~~~~~~~~g-~~g~i-~~S~DgG 279 (327)
T 2xbg_A 259 TPNEVWLAG-GAGAL-LCSQDGG 279 (327)
T ss_dssp SSSCEEEEE-STTCE-EEESSTT
T ss_pred CCCEEEEEe-CCCeE-EEeCCCC
Confidence 888776655 46766 4444444
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0068 Score=57.48 Aligned_cols=196 Identities=11% Similarity=0.108 Sum_probs=123.0
Q ss_pred CCceeEEecCC--CCEEEEEc-CCeEEEEECCCCcEEEEeeCCC-------CCcEEEEEE---cCCCCEEEEEeC-----
Q 011916 168 DFYLNLVDWSS--QNVLAVGL-GTCVYLWTASNSKVTRLCDLGP-------GDSVCSVQW---TREGSYISVGTN----- 229 (475)
Q Consensus 168 d~~v~~l~ws~--~~~la~~~-~~~V~lw~~~~~~~~~~~~~~~-------~~~V~~v~~---spdg~~la~g~~----- 229 (475)
..|..+++|.. +.++.+.. .+.|..|+...+....+ .+.. ...+..|.| .|+++++++...
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 45667799987 34555553 89999999987766555 3332 124689999 688887776442
Q ss_pred --------CCeEEEEECC---CCeeeEEec--C-----------CCCceEEEEeC--CCEEEEEeCC-CcEEEEECCCCC
Q 011916 230 --------LGQVQVWDGT---QCKRVRTFG--G-----------HQTRAGVLAWN--SRILSSGSRD-RNILQHDLRVSS 282 (475)
Q Consensus 230 --------dg~v~iwd~~---~~~~~~~~~--~-----------h~~~v~~l~~~--~~~l~sgs~d-g~I~iwd~~~~~ 282 (475)
+..|..||+. +++.+.... . -......++.+ |+..++++.. +.|...+.. +
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd--G 168 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD--G 168 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT--S
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC--C
Confidence 5779999998 777765543 1 11246677774 7888888877 777766665 2
Q ss_pred ccEEEec------CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce-eEEEe--cc---ccceeEE-EECCCCCcE
Q 011916 283 DYICKLA------GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP-TLRLT--EH---TAAVKAI-AWSPHQSSL 349 (475)
Q Consensus 283 ~~~~~~~------~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~-~~~~~--~h---~~~v~~l-~~sp~~~~l 349 (475)
.....+. ......++|+++|+|+.|++....|.|..+|+..... ..... +. -.....| .--.+|+.+
T Consensus 169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl 248 (334)
T 2p9w_A 169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV 248 (334)
T ss_dssp CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence 2222221 1122367999999999999887799999999885322 01111 11 1122332 333466655
Q ss_pred EEEecCCCCCeEEEEECCC
Q 011916 350 LASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 350 l~sg~Gs~d~~I~iwd~~~ 368 (475)
+++.. ..+.+.+.+...
T Consensus 249 lV~~~--~~~~~~l~S~Dg 265 (334)
T 2p9w_A 249 LVGAR--APYAISFRSWDN 265 (334)
T ss_dssp EEEEE--TTEEEEEECSST
T ss_pred EEEcC--CCCEEEEECCCC
Confidence 66543 455566655444
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0019 Score=60.66 Aligned_cols=226 Identities=13% Similarity=0.151 Sum_probs=113.1
Q ss_pred CCCEEEEEe-CC-----CeEEEEECCCCeeeEE--ecCCCCceEEEEeCCCEEEEEeCC-----CcEEEEECCCCCc--c
Q 011916 220 EGSYISVGT-NL-----GQVQVWDGTQCKRVRT--FGGHQTRAGVLAWNSRILSSGSRD-----RNILQHDLRVSSD--Y 284 (475)
Q Consensus 220 dg~~la~g~-~d-----g~v~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~--~ 284 (475)
++.+++.|+ .+ ..+.+||+.+.+-... +.........+..++.+++.|+.+ ..+.+||+..... .
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W 93 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVW 93 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCee
Confidence 445666666 32 3688899887653332 222222334445577888888765 4688999874330 2
Q ss_pred EEE--ecCccCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecC
Q 011916 285 ICK--LAGHKSEVCGLKWSHDDRELASGGND-----NQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 285 ~~~--~~~h~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
... +.........+.+ ++.+++.|+.+ +.+.+||+.+.+-... +.........+.+ ++ .+++.||-
T Consensus 94 ~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~ 168 (301)
T 2vpj_A 94 YSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SG-VIYCLGGY 168 (301)
T ss_dssp EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TT-EEEEECCB
T ss_pred EECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CC-EEEEECCC
Confidence 211 1111112222222 56677777643 3688999887653322 1111111122222 33 47777641
Q ss_pred CC---CCeEEEEECCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEEEecCCCcc--
Q 011916 356 TA---DRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGYS----QNQIMVWKYPSMAKVSTLTGHSLR-- 424 (475)
Q Consensus 356 s~---d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~~l~~h~~~-- 424 (475)
.. -..+.+||+.+.+-...- .....-..++.. ++ .|++..|.. .+.+.+||..+.+-...-.....+
T Consensus 169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 246 (301)
T 2vpj_A 169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-ND-HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCY 246 (301)
T ss_dssp CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS
T ss_pred CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CC-EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccc
Confidence 11 256889998776433221 111111122222 33 444442332 356899999876543322111111
Q ss_pred eEEEEECCCCCEEEEEeCCC-----CEEEEecCCC
Q 011916 425 VLYLATSPDGQTIVTGAGDE-----TLRFWNVFPS 454 (475)
Q Consensus 425 V~~l~~spdg~~l~s~s~Dg-----~I~iW~~~~~ 454 (475)
...+.+ ++++++.|+.++ .|.+||+...
T Consensus 247 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 247 VGATVL--RGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred eeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 122222 677777776653 4667776654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0036 Score=69.78 Aligned_cols=275 Identities=8% Similarity=0.048 Sum_probs=169.4
Q ss_pred EEecCCCCEEEEEc----CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 173 LVDWSSQNVLAVGL----GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 173 ~l~ws~~~~la~~~----~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
.+.+.++..+++-. +..|.|.|+..+..+....+..+ +.-.+|..+.||.-. ..+++|+|+++...++.+.
T Consensus 29 ~~T~eSDkyicvre~~~~~~~vvIidl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~ 103 (1630)
T 1xi4_A 29 TLTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT 103 (1630)
T ss_pred ceeeecCceEEEEecCCCCceEEEEECCCCCCcccccccch----hhccCCCcceEEEec-CCeEEEeehHHhhhhcccc
Confidence 34455566665533 44788889888664433222222 334678888777765 5789999999988887766
Q ss_pred CCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCc----cCCEEEEEEcCCCCEEEEEe-------CCCcE
Q 011916 249 GHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGH----KSEVCGLKWSHDDRELASGG-------NDNQL 316 (475)
Q Consensus 249 ~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h----~~~V~~l~~s~~~~~lasg~-------~Dg~I 316 (475)
.. ..|.--.| +.+.|+..+ +..|..|++.....++..+..| ...|..-..+++.++++..| -.|.+
T Consensus 104 ~~-e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m 181 (1630)
T 1xi4_A 104 MT-DDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM 181 (1630)
T ss_pred cC-CCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence 43 45777777 677776665 4679999997544555444444 45688888889999887654 34788
Q ss_pred EEEECCCCceeEEEeccccceeEEEEC--CCCCcEEEEecC-CCCCeEEEEECCCC---ceee---e--e--c---CCCC
Q 011916 317 LVWNQHSQQPTLRLTEHTAAVKAIAWS--PHQSSLLASGGG-TADRCIRFWNTSNG---HQLN---S--V--D---TGSQ 380 (475)
Q Consensus 317 ~iwd~~~~~~~~~~~~h~~~v~~l~~s--p~~~~ll~sg~G-s~d~~I~iwd~~~~---~~~~---~--~--~---~~~~ 380 (475)
.+|..+.+. .+.+.+|.+....+... +....+++.+.- ...++++|-++... .... . + . ...-
T Consensus 182 QLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Df 260 (1630)
T 1xi4_A 182 QLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF 260 (1630)
T ss_pred eeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCc
Confidence 888887543 34566777665554442 223335544321 12378899888543 1110 0 1 0 1223
Q ss_pred eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 381 VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
...+..++....++. -+.-|.|++||+.++..+..-+-....|...+-.....-++.....|.|.--.++.....
T Consensus 261 pv~~~vs~k~g~iy~--itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 261 PVAMQISEKHDVVFL--ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred ceEEEeccccCEEEE--EecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 456677777777776 447899999999999887655544455544444433333444446666666666554443
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0075 Score=57.20 Aligned_cols=195 Identities=9% Similarity=0.116 Sum_probs=118.2
Q ss_pred CCceEEEEeCC--CEEEEEe-CCCcEEEEECCCCCccEEEecC----c--cCCEEEEEE---cCCCCEEEEEe-------
Q 011916 251 QTRAGVLAWNS--RILSSGS-RDRNILQHDLRVSSDYICKLAG----H--KSEVCGLKW---SHDDRELASGG------- 311 (475)
Q Consensus 251 ~~~v~~l~~~~--~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~----h--~~~V~~l~~---s~~~~~lasg~------- 311 (475)
..---++.|+. ..|..++ ..++|..||..........+.. . ...+.+|.| .++++++++..
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~ 91 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF 91 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence 33445678863 4555554 7999999998632222222221 1 114689999 68887777644
Q ss_pred ------CCCcEEEEECC---CCceeEEEe--ccc-----------cceeEEEECCCCCcEEEEecCCCC-CeEEEEECCC
Q 011916 312 ------NDNQLLVWNQH---SQQPTLRLT--EHT-----------AAVKAIAWSPHQSSLLASGGGTAD-RCIRFWNTSN 368 (475)
Q Consensus 312 ------~Dg~I~iwd~~---~~~~~~~~~--~h~-----------~~v~~l~~sp~~~~ll~sg~Gs~d-~~I~iwd~~~ 368 (475)
.+..|..||+. +++.+.... ... .....++..++|. .+++++ .. +.|..++...
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s--~~~~~I~rV~pdG 168 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFA--LGMPAIARVSADG 168 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEE--ESSCEEEEECTTS
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCC--CCCCeEEEEeCCC
Confidence 26789999999 787766554 111 2478999999998 444443 55 7777777654
Q ss_pred Cceeeee--cC-----CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce--EEEec--CCC---cceEEE-EECCC
Q 011916 369 GHQLNSV--DT-----GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK--VSTLT--GHS---LRVLYL-ATSPD 433 (475)
Q Consensus 369 ~~~~~~~--~~-----~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~--~~~l~--~h~---~~V~~l-~~spd 433 (475)
. .+..+ .. ......|+++|+|+.|++. ...|.|..+|+..... +. +. +.. .....| ..-.+
T Consensus 169 ~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~--~~~g~L~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~ 244 (334)
T 2p9w_A 169 K-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAF--GGPRALTAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVG 244 (334)
T ss_dssp C-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEE--SSSSSEEEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEET
T ss_pred C-EEeeeeecCCCcccccCcceEEEeCCCCEEEEE--cCCCeEEEEcCCCCcceeec-ccccCCcccccCcccccccccC
Confidence 3 22222 11 1236789999999999984 4499999999875433 21 11 211 112332 33347
Q ss_pred CCE-EEEEeCCCCEEEEecC
Q 011916 434 GQT-IVTGAGDETLRFWNVF 452 (475)
Q Consensus 434 g~~-l~s~s~Dg~I~iW~~~ 452 (475)
|+. |++....+.+.+.+-+
T Consensus 245 G~vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 245 NESVLVGARAPYAISFRSWD 264 (334)
T ss_dssp TEEEEEEEETTEEEEEECSS
T ss_pred CEEEEEEcCCCCEEEEECCC
Confidence 777 5555556655554443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.033 Score=53.73 Aligned_cols=236 Identities=11% Similarity=0.094 Sum_probs=127.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-------CCCCceEEEEeCC-----CEEEEEe-C-------
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-------GHQTRAGVLAWNS-----RILSSGS-R------- 269 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-------~h~~~v~~l~~~~-----~~l~sgs-~------- 269 (475)
.....|+|.|+|+.|+++...|.|++++.. ++....+. ........+++++ ..|.... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 356799999999845566677999999853 33221111 1234567888863 4444432 2
Q ss_pred CCcEEEEECCCCC----ccEEEecC------ccCCEEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCc-
Q 011916 270 DRNILQHDLRVSS----DYICKLAG------HKSEVCGLKWSHDDRELASGGN-------------DNQLLVWNQHSQQ- 325 (475)
Q Consensus 270 dg~I~iwd~~~~~----~~~~~~~~------h~~~V~~l~~s~~~~~lasg~~-------------Dg~I~iwd~~~~~- 325 (475)
...|..+++.... .....+.. ....-..|.|.|||.++++.+. .|.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 2356666664221 11111111 1112457999999965555433 2467777765320
Q ss_pred -----------eeEEE-eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-----------------------
Q 011916 326 -----------PTLRL-TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH----------------------- 370 (475)
Q Consensus 326 -----------~~~~~-~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~----------------------- 370 (475)
....+ .++ .....++|.|....|+++-.| .++.=.|.-+..+.
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g-~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHG-PRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEEC-SBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecC-CCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 11111 233 336789999943346665322 22111222222111
Q ss_pred --------eeeeecCCCCeeEEEEcC-------CCCeEEEEEecCCCeEEEEECCCCceEEE--e-cCCCcceEEEEECC
Q 011916 371 --------QLNSVDTGSQVCNLAWSK-------NVNELVSTHGYSQNQIMVWKYPSMAKVST--L-TGHSLRVLYLATSP 432 (475)
Q Consensus 371 --------~~~~~~~~~~v~~l~~s~-------~~~~l~~~~g~~dg~I~iwd~~~~~~~~~--l-~~h~~~V~~l~~sp 432 (475)
++..+.+......+.|.. ++.++++ ....+.|...++..++.+.. + .....++..+++.|
T Consensus 255 ~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p 332 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIG--ALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGP 332 (353)
T ss_dssp SSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEE--ETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECT
T ss_pred CCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEE--EccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECC
Confidence 112223344577788864 4555555 56778888888876543322 2 22335799999999
Q ss_pred CCCEEEEEe-CCCCEEEEecC
Q 011916 433 DGQTIVTGA-GDETLRFWNVF 452 (475)
Q Consensus 433 dg~~l~s~s-~Dg~I~iW~~~ 452 (475)
||.++++.. .+| +||.+.
T Consensus 333 dG~lyv~td~~~g--~I~ri~ 351 (353)
T 2g8s_A 333 DGYLYVLTDESSG--ELLKVS 351 (353)
T ss_dssp TSCEEEEECSTTE--EEEEEE
T ss_pred CCcEEEEEeCCCC--EEEEEe
Confidence 998666543 344 566654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00017 Score=76.86 Aligned_cols=222 Identities=12% Similarity=-0.008 Sum_probs=128.7
Q ss_pred CCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEE-eCCCcEEEEECCCC---CccEEEecCccCCEEEEEEcCC
Q 011916 230 LGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSG-SRDRNILQHDLRVS---SDYICKLAGHKSEVCGLKWSHD 303 (475)
Q Consensus 230 dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg-s~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~s~~ 303 (475)
.+.|++.++.+.+....+.. ...+..++|+ ...|+.+ ...+.|..+++... ......+........+|++.+.
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~ 463 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 463 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence 35788888877655444332 2345677775 3455544 45678999988631 1111112111223556788754
Q ss_pred -CCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCe
Q 011916 304 -DRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQV 381 (475)
Q Consensus 304 -~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v 381 (475)
++++++-...+.|.++++........+.........|++.|.+..|+.+..+ ..+.|..+++........+. .-...
T Consensus 464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~-~~~~I~~~~~dG~~~~~l~~~~l~~P 542 (699)
T 1n7d_A 464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLVTENIQWP 542 (699)
T ss_dssp SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS-SSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC-CCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence 4444444556789999987654333333333456889999987777776421 23678888775432222221 23456
Q ss_pred eEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
..|+|++++..|+.+ -...+.|.++++........+.. .......|++..+ .++++....+.|..++..++.
T Consensus 543 nGlavd~~~~~LY~a-D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~ 616 (699)
T 1n7d_A 543 NGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGS 616 (699)
T ss_dssp CCEEECTTTCCEEEE-ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEE
T ss_pred cEEEEeccCCEEEEE-ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCC
Confidence 789999988887775 45678899999865433332221 1223445666443 344455556789888876544
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0054 Score=57.52 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=112.7
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCe-----eeEEecCCCCceEEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-----GQVQVWDGTQCK-----RVRTFGGHQTRAGVL 257 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-----g~v~iwd~~~~~-----~~~~~~~h~~~v~~l 257 (475)
..+++||..+.+...+..+.....-.+++ .-++.+++.|+.+ ..+.+||..+.+ .+..+........++
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 47999999998876665433221111222 2357777787765 468999987755 222222222233444
Q ss_pred EeCCCEEEEEeCCC-----cEEEEECCCCC-ccEEEecCccCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCce
Q 011916 258 AWNSRILSSGSRDR-----NILQHDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELASGGND-----NQLLVWNQHSQQP 326 (475)
Q Consensus 258 ~~~~~~l~sgs~dg-----~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~~~~~~ 326 (475)
..++.+++.|+.++ .+.+||+.... ..+..+......-..+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 110 ~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 110 TLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp EETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred EECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence 55777888877543 57888886332 111222211112222222 67777777754 4688999887653
Q ss_pred eEEE--eccccceeEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEec
Q 011916 327 TLRL--TEHTAAVKAIAWSPHQSSLLASGGGTA---DRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 327 ~~~~--~~h~~~v~~l~~sp~~~~ll~sg~Gs~---d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
...- .........+.+ +..|++.||... -..+.+||+.+.+-...- .....-..++.. +++ |++. |.
T Consensus 188 ~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i~v~-GG 261 (301)
T 2vpj_A 188 TNVTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL-RGR-LYAI-AG 261 (301)
T ss_dssp EEECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEE-CC
T ss_pred EeCCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE-CCE-EEEE-cC
Confidence 3221 111111122222 334777775111 256899999876533221 111111122222 444 4444 43
Q ss_pred CC-----CeEEEEECCCCc
Q 011916 400 SQ-----NQIMVWKYPSMA 413 (475)
Q Consensus 400 ~d-----g~I~iwd~~~~~ 413 (475)
.+ +.+.+||..+.+
T Consensus 262 ~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 262 YDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp BCSSSBEEEEEEEETTTTE
T ss_pred cCCCcccccEEEEcCCCCe
Confidence 33 467888887654
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.037 Score=53.33 Aligned_cols=163 Identities=9% Similarity=0.020 Sum_probs=99.6
Q ss_pred CCCeEEEEECCC--Ceee-EEecC-----CCCceEEEEe----CCC-EEEEE-eC--CCcEEEEECCCCCccE---EEec
Q 011916 229 NLGQVQVWDGTQ--CKRV-RTFGG-----HQTRAGVLAW----NSR-ILSSG-SR--DRNILQHDLRVSSDYI---CKLA 289 (475)
Q Consensus 229 ~dg~v~iwd~~~--~~~~-~~~~~-----h~~~v~~l~~----~~~-~l~sg-s~--dg~I~iwd~~~~~~~~---~~~~ 289 (475)
.+|.|.++|..+ .+.. ..+.+ .......+.+ ++. +|+++ .. +.+|.+|++...+... ..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 689999999873 2211 12222 1235555665 232 34444 33 5678888876443322 2232
Q ss_pred Cc-cCCEEEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEE
Q 011916 290 GH-KSEVCGLKWSHDDRELASGG-----------------NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 290 ~h-~~~V~~l~~s~~~~~lasg~-----------------~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~ 351 (475)
+. -.....+.+.++|.+.++.. ..|.|+.+|. ++ +..+...-...+.|+|+||++.+++
T Consensus 161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEE
Confidence 21 23578999999998777754 1245666655 32 3333333455689999999998988
Q ss_pred EecCCCCCeEEEEECCC-Cce--eeeecCCCCeeEEEEcC-CCCeEEEE
Q 011916 352 SGGGTADRCIRFWNTSN-GHQ--LNSVDTGSQVCNLAWSK-NVNELVST 396 (475)
Q Consensus 352 sg~Gs~d~~I~iwd~~~-~~~--~~~~~~~~~v~~l~~s~-~~~~l~~~ 396 (475)
+-+ ..+.|..|++.. +.. ...+...+....+++.+ +|+..+++
T Consensus 238 adt--~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwva~ 284 (355)
T 3sre_A 238 AEL--LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 284 (355)
T ss_dssp EEG--GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred EeC--CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEEEe
Confidence 865 688999999863 332 22334456678899999 58877763
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.013 Score=55.07 Aligned_cols=216 Identities=11% Similarity=0.057 Sum_probs=113.8
Q ss_pred CCeEEEEECCCCcEEEEeeCCCC-CcEEEEEEcCCCCEEEEEeCC----CeEEEEECCCCeeeEE--ecCCCCceEEEEe
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPG-DSVCSVQWTREGSYISVGTNL----GQVQVWDGTQCKRVRT--FGGHQTRAGVLAW 259 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~-~~V~~v~~spdg~~la~g~~d----g~v~iwd~~~~~~~~~--~~~h~~~v~~l~~ 259 (475)
.+.+.+||..+.+...+-.+... .....+. -++.+++.|+.+ ..+.+||..+.+-... +.........+..
T Consensus 23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 100 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA 100 (306)
T ss_dssp TTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE
T ss_pred CceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE
Confidence 35899999999887766543222 1222222 267777888754 5788999888754332 2222223344455
Q ss_pred CCCEEEEEeCC------CcEEEEECCCCCccEEE--ecCccCCEEEEEEcCCCCEEEEEeC---------CCcEEEEECC
Q 011916 260 NSRILSSGSRD------RNILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGN---------DNQLLVWNQH 322 (475)
Q Consensus 260 ~~~~l~sgs~d------g~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~s~~~~~lasg~~---------Dg~I~iwd~~ 322 (475)
++.+++.|+.+ ..+.+||.... ..... +.........+.+ ++++++.|+. -..+.+||+.
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~ 177 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTE-SWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPA 177 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCC-ceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCC
Confidence 77888888765 46888998733 22211 1111111122222 5667777653 3458899998
Q ss_pred CCceeEEEe--ccccceeEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeee--ecCC-CCeeEEEEcCCCCeEE
Q 011916 323 SQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTA---DRCIRFWNTSNGHQLNS--VDTG-SQVCNLAWSKNVNELV 394 (475)
Q Consensus 323 ~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~---d~~I~iwd~~~~~~~~~--~~~~-~~v~~l~~s~~~~~l~ 394 (475)
+.+-...-. ........+.+ + ..|++.||... -..+.+||+.+.+-... +... .....+.+ ++ .|+
T Consensus 178 ~~~W~~~~~~p~~r~~~~~~~~--~-~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~i~ 251 (306)
T 3ii7_A 178 TETWTELCPMIEARKNHGLVFV--K-DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GS-IVY 251 (306)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--T-TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TT-EEE
T ss_pred CCeEEECCCccchhhcceEEEE--C-CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CC-EEE
Confidence 765322211 11111122222 3 34777764111 24688999887642222 1111 11222222 34 444
Q ss_pred EEEec----CCCeEEEEECCCCc
Q 011916 395 STHGY----SQNQIMVWKYPSMA 413 (475)
Q Consensus 395 ~~~g~----~dg~I~iwd~~~~~ 413 (475)
+..|. ..+.+.+||..+.+
T Consensus 252 v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 252 VLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEECBCSSSBCCEEEEEETTTTE
T ss_pred EEeCcCCCeeeeeEEEEcCCCCe
Confidence 44332 22568899987754
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0081 Score=56.38 Aligned_cols=217 Identities=12% Similarity=0.156 Sum_probs=110.9
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC-----CeEEEEECCCCeeeEE--ecCCCCceEEEEeC
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL-----GQVQVWDGTQCKRVRT--FGGHQTRAGVLAWN 260 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d-----g~v~iwd~~~~~~~~~--~~~h~~~v~~l~~~ 260 (475)
..+.+||..+.+...+..+.....-.+++. -++.+++.|+.+ ..+.+||..+.+-... +.........+..+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~ 108 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLN 108 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEET
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEEC
Confidence 468999999887766644322211112222 267777787754 3588999887654332 22222233444567
Q ss_pred CCEEEEEeCCC-----cEEEEECCCCCccEEE--ecCccCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCce
Q 011916 261 SRILSSGSRDR-----NILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGND-------NQLLVWNQHSQQP 326 (475)
Q Consensus 261 ~~~l~sgs~dg-----~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~s~~~~~lasg~~D-------g~I~iwd~~~~~~ 326 (475)
+.+++.|+.++ .+.+||+... ..... +.........+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 109 ~~iyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 109 GLLYAVGGFDGSTGLSSVEAYNIKSN-EWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TEEEEEEEECSSCEEEEEEEEETTTT-EEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CEEEEEcCCCCCccCceEEEEeCCCC-eEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 88888887654 4778887632 22211 1111111222222 56677776642 4588999887653
Q ss_pred eEE--EeccccceeEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeEEEEEec
Q 011916 327 TLR--LTEHTAAVKAIAWSPHQSSLLASGGGTA---DRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNELVSTHGY 399 (475)
Q Consensus 327 ~~~--~~~h~~~v~~l~~sp~~~~ll~sg~Gs~---d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~ 399 (475)
... +.........+.+ + ..|++.||... ...+.+||+.+.+-... ......-..++.. +++ |++. |.
T Consensus 186 ~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~-i~v~-GG 259 (302)
T 2xn4_A 186 TYIAEMSTRRSGAGVGVL--N-NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV-NGL-LYVV-GG 259 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--T-TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEE-CC
T ss_pred EECCCCccccccccEEEE--C-CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE-CCE-EEEE-CC
Confidence 322 1111111122222 3 34777775111 24689999887643322 1111111112221 344 4444 43
Q ss_pred CC-----CeEEEEECCCCce
Q 011916 400 SQ-----NQIMVWKYPSMAK 414 (475)
Q Consensus 400 ~d-----g~I~iwd~~~~~~ 414 (475)
.+ ..+.+||..+.+-
T Consensus 260 ~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 260 DDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp BCSSSBCCCEEEEETTTTEE
T ss_pred cCCCcccccEEEEcCCCCeE
Confidence 33 3588888876643
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0073 Score=56.83 Aligned_cols=225 Identities=7% Similarity=0.080 Sum_probs=114.1
Q ss_pred CCEEEEEeC--CCeEEEEECCCCeeeE--EecCCCCceEEEEeCCCEEEEEeCC----CcEEEEECCCCCccEEE--ecC
Q 011916 221 GSYISVGTN--LGQVQVWDGTQCKRVR--TFGGHQTRAGVLAWNSRILSSGSRD----RNILQHDLRVSSDYICK--LAG 290 (475)
Q Consensus 221 g~~la~g~~--dg~v~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l~sgs~d----g~I~iwd~~~~~~~~~~--~~~ 290 (475)
+.++++|+. ...+.+||..+.+-.. .+.........+..++.+++.|+.+ ..+.+||.... ..... +..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~~p~ 90 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKD-SWYSKLGPPT 90 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTT-EEEEEECCSS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCC-eEEECCCCCc
Confidence 345556654 3578999988765432 2222222334445677888888765 56888888733 22211 111
Q ss_pred ccCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEecCCC-----
Q 011916 291 HKSEVCGLKWSHDDRELASGGND------NQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTA----- 357 (475)
Q Consensus 291 h~~~V~~l~~s~~~~~lasg~~D------g~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~----- 357 (475)
.......+.+ ++.+++.|+.+ ..+.+||..+.+-...-. ........+.+ ++ .+++.||...
T Consensus 91 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~ 165 (306)
T 3ii7_A 91 PRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNVSG 165 (306)
T ss_dssp CCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEECCEESCTTTC
T ss_pred cccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CC-EEEEECCCCCCCCcc
Confidence 1112222222 66777787765 468999998765322211 11111112222 33 4777764111
Q ss_pred --CCeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEE--EecCCCcceEE
Q 011916 358 --DRCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYS----QNQIMVWKYPSMAKVS--TLTGHSLRVLY 427 (475)
Q Consensus 358 --d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~--~l~~h~~~V~~ 427 (475)
-..+.+||+.+.+-...-. ....-..++.. +++ |++..|.. -..+.+||..+.+-.. .+.........
T Consensus 166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 243 (306)
T 3ii7_A 166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243 (306)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEE
T ss_pred cccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeE
Confidence 3558899988764322211 11111122222 344 44442322 2468899988764332 22211112222
Q ss_pred EEECCCCCEEEEEeCC-----CCEEEEecCCCC
Q 011916 428 LATSPDGQTIVTGAGD-----ETLRFWNVFPSL 455 (475)
Q Consensus 428 l~~spdg~~l~s~s~D-----g~I~iW~~~~~~ 455 (475)
+.+ ++.+++.|+.+ ..+.+||+....
T Consensus 244 ~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 244 AAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 333 67778888754 356777776543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0079 Score=56.47 Aligned_cols=227 Identities=15% Similarity=0.154 Sum_probs=110.5
Q ss_pred CCEEEEEeCC----CeEEEEECCCCeeeEE--ecCCCCceEEEEeCCCEEEEEeCC-----CcEEEEECCCCCccEEE--
Q 011916 221 GSYISVGTNL----GQVQVWDGTQCKRVRT--FGGHQTRAGVLAWNSRILSSGSRD-----RNILQHDLRVSSDYICK-- 287 (475)
Q Consensus 221 g~~la~g~~d----g~v~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~~-- 287 (475)
+.+++.|+.+ ..+.+||+.+.+-... +......-..+..++.+++.|+.+ ..+.+||.... .....
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKD-QWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTT-EEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCC-ceeeCCC
Confidence 3455555543 3578888887653332 222112223344577788888755 35888888632 22111
Q ss_pred ecCccCCEEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecCCC---
Q 011916 288 LAGHKSEVCGLKWSHDDRELASGGNDN-----QLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTA--- 357 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~~~~~lasg~~Dg-----~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~Gs~--- 357 (475)
+.........+.+ ++..++.|+.++ .+.+||+.+.+-... +.........+.+ + ..+++.||...
T Consensus 95 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~ 169 (302)
T 2xn4_A 95 MRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--G-GLLYAVGGYDVASR 169 (302)
T ss_dssp CSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--T-TEEEEECCEETTTT
T ss_pred CCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--C-CEEEEEeCCCCCCC
Confidence 1111111222222 567777787553 578899887653222 1111111122222 3 34777764111
Q ss_pred --CCeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEEEecCCCcceEEEE
Q 011916 358 --DRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNELVSTHGYS----QNQIMVWKYPSMAKVSTLTGHSLRVLYLA 429 (475)
Q Consensus 358 --d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~~l~~h~~~V~~l~ 429 (475)
-..+.+||+.+.+-... +.....-.+++.. ++ .|++..|.. .+.+.+||..+.+-...-.....+...-+
T Consensus 170 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~ 247 (302)
T 2xn4_A 170 QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NN-LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV 247 (302)
T ss_dssp EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred ccccEEEEEeCCCCcEEECCCCccccccccEEEE-CC-EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE
Confidence 24588999887643322 2111111122222 34 444442332 24689999987654322111111111111
Q ss_pred ECCCCCEEEEEeCCC-----CEEEEecCCCC
Q 011916 430 TSPDGQTIVTGAGDE-----TLRFWNVFPSL 455 (475)
Q Consensus 430 ~spdg~~l~s~s~Dg-----~I~iW~~~~~~ 455 (475)
...++++++.|+.++ .+.+||+....
T Consensus 248 ~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 248 CAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp EEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred EEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 122677777777654 47888877554
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.07 Score=51.41 Aligned_cols=218 Identities=10% Similarity=0.084 Sum_probs=116.2
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeC----CCCCcEEEEEEcCC---CCEEEEEeC-C-----CeEEEE
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDL----GPGDSVCSVQWTRE---GSYISVGTN-L-----GQVQVW 236 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~----~~~~~V~~v~~spd---g~~la~g~~-d-----g~v~iw 236 (475)
...++|.++ .++++..++.|++++ +++...+..+ ........|+|+|+ +..|.++.. . +.|..|
T Consensus 33 P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~ 110 (352)
T 2ism_A 33 PWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRL 110 (352)
T ss_dssp EEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEE
T ss_pred ceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEE
Confidence 456888887 677777789999998 4543333222 12457899999998 555555543 2 578888
Q ss_pred ECCCCe-----e-eEEec---CCCCceEEEEe--CCCEEEEEeC-------------CCcEEEEECCCC-----------
Q 011916 237 DGTQCK-----R-VRTFG---GHQTRAGVLAW--NSRILSSGSR-------------DRNILQHDLRVS----------- 281 (475)
Q Consensus 237 d~~~~~-----~-~~~~~---~h~~~v~~l~~--~~~~l~sgs~-------------dg~I~iwd~~~~----------- 281 (475)
+...+. . +..+. +.......++| ++.++++.+. .|.|.-++....
T Consensus 111 ~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~ 190 (352)
T 2ism_A 111 RHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRR 190 (352)
T ss_dssp EECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCT
T ss_pred EeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCC
Confidence 876431 1 12232 11112346777 4555555332 145555555420
Q ss_pred -CccEEEecCccCCEEEEEEcC-CCCEEEEEeCCCc--------EEEEECCC----------------CceeEEEecccc
Q 011916 282 -SDYICKLAGHKSEVCGLKWSH-DDRELASGGNDNQ--------LLVWNQHS----------------QQPTLRLTEHTA 335 (475)
Q Consensus 282 -~~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg~--------I~iwd~~~----------------~~~~~~~~~h~~ 335 (475)
........++ .....++|+| +++++++-...+. |.+..... ..++..+. +..
T Consensus 191 ~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~~ 268 (352)
T 2ism_A 191 GARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP-QGF 268 (352)
T ss_dssp TSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TCC
T ss_pred CCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC-CCC
Confidence 0111111223 2356789999 6665554332222 33322111 11233332 223
Q ss_pred ceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc-------eeeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 336 AVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH-------QLNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 336 ~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~-------~~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
....++| .++. ++++.. ..+.|...++.... ....+.....+..+++.|+|..+++.
T Consensus 269 ap~G~~~-~~G~-l~v~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~ 332 (352)
T 2ism_A 269 PPGNLAF-FRGD-LYVAGL--RGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTT 332 (352)
T ss_dssp CEEEEEE-ETTE-EEEEET--TTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEE
T ss_pred CCcceEE-ECCE-EEEEEC--CCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEE
Confidence 4567777 3454 555443 56778877765432 11122334678899999999766663
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.077 Score=51.99 Aligned_cols=195 Identities=9% Similarity=0.118 Sum_probs=132.8
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCC-CcEEEEeeCC---CCCcEEEEEEcCCCCEEEEEeC-------CCeEEEEECC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASN-SKVTRLCDLG---PGDSVCSVQWTREGSYISVGTN-------LGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~-~~~~~~~~~~---~~~~V~~v~~spdg~~la~g~~-------dg~v~iwd~~ 239 (475)
|.--.|-..+.++.-.+..||-|++++ ....+.++.. ....|....-+++.++++..+- .|.+++|.++
T Consensus 108 VvfWkWis~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e 187 (494)
T 1bpo_A 108 VTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (494)
T ss_dssp CCEEEEEETTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST
T ss_pred ceEEEecCCCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc
Confidence 444678888899999999999999975 3556666632 1467888888999998875432 4788999977
Q ss_pred CCeeeEEecCCCCceEEEEeCC-----CEEEEEeCC---CcEEEEECCCC--Cc------cEEEec---CccCCEEEEEE
Q 011916 240 QCKRVRTFGGHQTRAGVLAWNS-----RILSSGSRD---RNILQHDLRVS--SD------YICKLA---GHKSEVCGLKW 300 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~~~-----~~l~sgs~d---g~I~iwd~~~~--~~------~~~~~~---~h~~~V~~l~~ 300 (475)
.+ ..+.++||......+..+| .+++.+.+. +.++|.++... +. .+..+. .-.+--.++..
T Consensus 188 r~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqv 266 (494)
T 1bpo_A 188 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (494)
T ss_dssp TC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEE
T ss_pred cc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEe
Confidence 54 4466788887777666654 355555543 78999998543 11 111111 12344567888
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
++.-..+..-+.-|.|++||+.++.+++.-+-....|..-+-......+++.. ..|.|.--.+...
T Consensus 267 s~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vn---r~GqVl~v~v~e~ 332 (494)
T 1bpo_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN---RKGQVLSVCVEEE 332 (494)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEE---TTCEEEEEEECTT
T ss_pred cccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEc---cCceEEEEEEccc
Confidence 88878888889999999999999999887665566665555555555555554 4665555554443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.088 Score=49.54 Aligned_cols=240 Identities=10% Similarity=0.030 Sum_probs=140.4
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC--------------CeEEEEECCCCeeeEEecCCCC
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL--------------GQVQVWDGTQCKRVRTFGGHQT 252 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d--------------g~v~iwd~~~~~~~~~~~~h~~ 252 (475)
++.|+..+.+.....++.. +. +--++++|.+|+.+... ..|+..++...+...... .
T Consensus 36 ~~~ly~~~~dg~~~~~l~~----~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~ 106 (302)
T 3s25_A 36 NGRLYAMNIDGSNIHKLSN----DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---D 106 (302)
T ss_dssp TTEEEEEETTSCSCEEEEE----EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---S
T ss_pred CceEEEEcCCCCCCEEccC----Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---C
Confidence 5778888887777666653 12 33467899988887653 357777777665433222 2
Q ss_pred ceEEEEeCCCEEEEEe--CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEE
Q 011916 253 RAGVLAWNSRILSSGS--RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN-DNQLLVWNQHSQQPTLR 329 (475)
Q Consensus 253 ~v~~l~~~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd~~~~~~~~~ 329 (475)
....++..++.|+-.. .++.-.||-+...+.....+..+.. ..++++++.|+-.+. ...|++-++..+.....
T Consensus 107 ~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l 182 (302)
T 3s25_A 107 PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF 182 (302)
T ss_dssp CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEE
T ss_pred CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEE
Confidence 2335666787777665 4455555544444444455554433 456778888886665 57888888877654433
Q ss_pred EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 330 ~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
+.+ ... ..+.|++.+|+.+..+ ....|..-++......... ...+ ..|+|+++.|+.+.....+.|...++
T Consensus 183 ~~~---~~~-~~~~P~g~~iy~t~~~-~~~~I~~~~ldG~~~~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~ 253 (302)
T 3s25_A 183 YDC---NCY-KPVVLDDTNVYYMDVN-RDNAIVHVNINNPNPVVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKN 253 (302)
T ss_dssp ECS---CEE-EEEEEETTEEEEEEGG-GTTEEEEECSSSCCCEECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEET
T ss_pred eCC---Ccc-ceeeecCCEEEEEEcC-CCcEEEEEECCCCCeEEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEEC
Confidence 332 222 3456999988887531 2246777777665533322 2233 34888899988743334567888887
Q ss_pred CCCceEEEecCCCcceEEEEECCCCCEEEEEe-CCCCEEEEecCC
Q 011916 410 PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA-GDETLRFWNVFP 453 (475)
Q Consensus 410 ~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s-~Dg~I~iW~~~~ 453 (475)
..........+ .+..+ ++.+.+|+-.. ..+.|..-++..
T Consensus 254 DG~~r~~l~~~---~~~~i--~i~~d~Iy~td~~~~~i~~~~~dG 293 (302)
T 3s25_A 254 DGTGFKELAKG---EFCNI--NVTSQYVYFTDFVSNKEYCTSTQN 293 (302)
T ss_dssp TSCCCEEEEES---CEEEE--EECSSEEEEEETTTCCEEEEESSS
T ss_pred CCCccEEeeCC---ccceE--EEeCCEEEEEECCCCeEEEEECCC
Confidence 65433322222 23444 34566666554 345555445443
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.014 Score=55.27 Aligned_cols=182 Identities=12% Similarity=0.090 Sum_probs=95.3
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCC-CCcEEEEEEcCCCCEEEEEeC----C-------CeEEEEECCCCeeeEE--
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTN----L-------GQVQVWDGTQCKRVRT-- 246 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~-~~~V~~v~~spdg~~la~g~~----d-------g~v~iwd~~~~~~~~~-- 246 (475)
++..|. ..+.+||..+++... ..+.. ...........++..++.|+. + ..+.+||..+.+-...
T Consensus 7 l~~~GG-~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~ 84 (315)
T 4asc_A 7 IFMISE-EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPP 84 (315)
T ss_dssp EEEEET-TEEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCC
T ss_pred EEEEcC-CceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCC
Confidence 344443 789999999998754 33321 122223333457888888874 1 1277889887654322
Q ss_pred ecCCCCceEEEEeCCCEEEEEeCC--------CcEEEEECCCCCccEE--EecCccCCEEEEEEcCCCCEEEEEeC-C--
Q 011916 247 FGGHQTRAGVLAWNSRILSSGSRD--------RNILQHDLRVSSDYIC--KLAGHKSEVCGLKWSHDDRELASGGN-D-- 313 (475)
Q Consensus 247 ~~~h~~~v~~l~~~~~~l~sgs~d--------g~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~~~~~lasg~~-D-- 313 (475)
+.........+..++.+++.|+.+ ..+.+||.... .... .+.........+. .++++++.|+. +
T Consensus 85 ~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~-~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~ 161 (315)
T 4asc_A 85 LPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSF-KWGESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDR 161 (315)
T ss_dssp BSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTT-EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCTTS
T ss_pred CCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCC-cEeECCCCCCcccceeEEE--ECCEEEEEeCCCCCC
Confidence 211111223344577777777743 45888888732 2111 1111111122222 35667777775 2
Q ss_pred ---CcEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecCCCC---CeEEEEECCCCc
Q 011916 314 ---NQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTAD---RCIRFWNTSNGH 370 (475)
Q Consensus 314 ---g~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d---~~I~iwd~~~~~ 370 (475)
+.+.+||..+.+-... +........++.+ ++ .|++.||-..+ ..+.+||+.+.+
T Consensus 162 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 162 KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred cccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CC-EEEEEeccCCCCccceEEEEECCCCe
Confidence 4689999887643221 1111111122222 33 47777752111 268899988764
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0092 Score=60.13 Aligned_cols=158 Identities=10% Similarity=0.087 Sum_probs=99.6
Q ss_pred CEEEEEEcC-CCCEEE-EEeCCCcEEEEECCCCceeEEEecc---ccceeEEEE-------CCCCCcEEEEecCC----C
Q 011916 294 EVCGLKWSH-DDRELA-SGGNDNQLLVWNQHSQQPTLRLTEH---TAAVKAIAW-------SPHQSSLLASGGGT----A 357 (475)
Q Consensus 294 ~V~~l~~s~-~~~~la-sg~~Dg~I~iwd~~~~~~~~~~~~h---~~~v~~l~~-------sp~~~~ll~sg~Gs----~ 357 (475)
....|+|+| ++..|+ +-...+.|++.|+..+......... ......|+| ++++.+|+++.... .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 477899998 344444 4444467999999887655443321 235789999 99999777775311 0
Q ss_pred CCeEEEEECCC-Ccee-----eeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECC-------CCce----------
Q 011916 358 DRCIRFWNTSN-GHQL-----NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYP-------SMAK---------- 414 (475)
Q Consensus 358 d~~I~iwd~~~-~~~~-----~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~-------~~~~---------- 414 (475)
...|.+++... +... ..+........++++|++..|+++ ...++.|+.+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvt-d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g 298 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFN-SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN 298 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEE-ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEE-ECCCCEEEEEecccccccccCceeeccccccccc
Confidence 12377776443 2221 222223345678899976666654 5678899999987 4442
Q ss_pred ----EEEecCCCcceEEEEECCCCCEEEEE-eCCCCEEEEecCC
Q 011916 415 ----VSTLTGHSLRVLYLATSPDGQTIVTG-AGDETLRFWNVFP 453 (475)
Q Consensus 415 ----~~~l~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iW~~~~ 453 (475)
+..+ +.......|+|+|+|.+|+.+ +....|+.++...
T Consensus 299 ~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 299 TFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp TEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 2222 233456899999999965554 4566787766654
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.12 Score=49.51 Aligned_cols=226 Identities=14% Similarity=0.166 Sum_probs=125.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEe----cCCCCceEEEEeCC-----CEEEEE---eCCCcEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--RTF----GGHQTRAGVLAWNS-----RILSSG---SRDRNIL 274 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--~~~----~~h~~~v~~l~~~~-----~~l~sg---s~dg~I~ 274 (475)
-.....|+|.|||+++++-...|.|++++..+++.. ..+ .........|++++ ..|... ..+..|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 356789999999997666655899999986655432 222 12345678899864 344432 2345566
Q ss_pred EEECCCC---------CccE-EEec-CccCCEEEEEEcCCCCEEEEEeC-------------CCcEEEEECCCC------
Q 011916 275 QHDLRVS---------SDYI-CKLA-GHKSEVCGLKWSHDDRELASGGN-------------DNQLLVWNQHSQ------ 324 (475)
Q Consensus 275 iwd~~~~---------~~~~-~~~~-~h~~~V~~l~~s~~~~~lasg~~-------------Dg~I~iwd~~~~------ 324 (475)
-|.+... .+.+ ..+. .....-..|.|.|||.+.++.+. .|.|.-.+....
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6655421 1111 1222 11123467999999987777542 245555555422
Q ss_pred ---ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc------------------eeeeecCC-CCee
Q 011916 325 ---QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH------------------QLNSVDTG-SQVC 382 (475)
Q Consensus 325 ---~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~------------------~~~~~~~~-~~v~ 382 (475)
..+.. .+|. ....++|+|++. |+++-.| .|+.-.|--+..|. ++..+.+. ....
T Consensus 191 f~~~~i~a-~G~R-Np~Gla~dp~G~-L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~ 266 (347)
T 3das_A 191 FPGSPVYS-YGHR-NVQGLAWDDKQR-LFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPS 266 (347)
T ss_dssp STTCCEEE-BCCS-BCCEEEECTTCC-EEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEE
T ss_pred CCCCeEEe-eCCC-CcceEEECCCCC-EEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCc
Confidence 11211 2343 356899999876 5555422 23322222222221 12222222 3556
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCc----eEEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMA----KVSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~----~~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
.++|.. +..++. ....+.|....+.... ....+.+...++..|+..|||.++++..
T Consensus 267 G~~~~~-g~~~~~--~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 267 GIAYAE-GSVWMA--GLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEET-TEEEEE--ESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred ceEEEc-Cceeec--cccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 777763 444444 5566677766665432 2233445567899999999998776654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.044 Score=51.74 Aligned_cols=176 Identities=13% Similarity=0.109 Sum_probs=91.4
Q ss_pred CeEEEEECCCCcEEEEeeCCC-CCcEEEEEEcCCCCEEEEEeC----CC-------eEEEEECCCCeeeEE--ecCCCCc
Q 011916 188 TCVYLWTASNSKVTRLCDLGP-GDSVCSVQWTREGSYISVGTN----LG-------QVQVWDGTQCKRVRT--FGGHQTR 253 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~-~~~V~~v~~spdg~~la~g~~----dg-------~v~iwd~~~~~~~~~--~~~h~~~ 253 (475)
..+..||..+.+.... .... ...........++..++.|+. ++ .+.+||..+.+-... +......
T Consensus 24 ~~~~~yd~~~~~W~~~-~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 102 (318)
T 2woz_A 24 TAAVAYDPMENECYLT-ALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL 102 (318)
T ss_dssp SEEEEEETTTTEEEEE-EECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred cceEEECCCCCceecc-cCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence 4689999999887653 2221 112222233457888888873 12 177888877654332 2222222
Q ss_pred eEEEEeCCCEEEEEeCC-------CcEEEEECCCCCccEEE--ecCccCCEEEEEEcCCCCEEEEEeC------CCcEEE
Q 011916 254 AGVLAWNSRILSSGSRD-------RNILQHDLRVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGN------DNQLLV 318 (475)
Q Consensus 254 v~~l~~~~~~l~sgs~d-------g~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~s~~~~~lasg~~------Dg~I~i 318 (475)
......++.+++.|+.+ ..+.+||... ...... +......-..+. .++.+++.|+. -+.+.+
T Consensus 103 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~ 179 (318)
T 2woz_A 103 FGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVA-AKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFI 179 (318)
T ss_dssp CEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTT-TEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEE
T ss_pred cceEEECCEEEEEcCccCCCCcccceEEEEeCCC-CCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEE
Confidence 33444577888888764 2477888863 222211 111111111222 36667777764 246899
Q ss_pred EECCCCceeEEE--eccccceeEEEECCCCCcEEEEecCCCC---CeEEEEECCCCc
Q 011916 319 WNQHSQQPTLRL--TEHTAAVKAIAWSPHQSSLLASGGGTAD---RCIRFWNTSNGH 370 (475)
Q Consensus 319 wd~~~~~~~~~~--~~h~~~v~~l~~sp~~~~ll~sg~Gs~d---~~I~iwd~~~~~ 370 (475)
||+.+.+-...- ........++.+ ++ .|++.||...+ ..+.+||+.+.+
T Consensus 180 yd~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 180 YNPKKGDWKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EETTTTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EcCCCCEEEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCCCe
Confidence 999876532221 111111122222 33 47777642112 457789988764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.034 Score=52.42 Aligned_cols=215 Identities=7% Similarity=-0.031 Sum_probs=120.5
Q ss_pred cCCCCEEEEEeC--CCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCC--------------CcEEEEECCCC
Q 011916 218 TREGSYISVGTN--LGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRD--------------RNILQHDLRVS 281 (475)
Q Consensus 218 spdg~~la~g~~--dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~d--------------g~I~iwd~~~~ 281 (475)
+.+|.+|+.... ++.|...+.+... ...+.. ..+..+..+++.|+-+... ..|+..++...
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~--~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~ 98 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN--DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH 98 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE--EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC--CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence 345666666542 4556666644333 222221 2244555566666555432 35666666532
Q ss_pred CccEEEecCccCCEEEEEEcCCCCEEEEEe----CCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 282 SDYICKLAGHKSEVCGLKWSHDDRELASGG----NDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 282 ~~~~~~~~~h~~~V~~l~~s~~~~~lasg~----~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
....+.... +..|++++++|+-.. ....|+..++.... ...+..+.. .+|+++++.|+.+.. .
T Consensus 99 --~~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~~~~----~~~~~~g~~iy~t~~--g 165 (302)
T 3s25_A 99 --GSTVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKNHYL----FTCNTSDRYFYYNNP--K 165 (302)
T ss_dssp --CCEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEESSCC----CCSEEETTEEEEECT--T
T ss_pred --cceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeCCCc----eEeeEECCEEEEEeC--C
Confidence 223332221 236777888888776 33456666666443 344544433 456788998888753 4
Q ss_pred CCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEE
Q 011916 358 DRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTI 437 (475)
Q Consensus 358 d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 437 (475)
...|...++..+.....+. +... ..+.|++..|+-+.......|..-++.... ...+.. ..+ ..|+|++..|
T Consensus 166 ~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~I 237 (302)
T 3s25_A 166 NGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLI 237 (302)
T ss_dssp TCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEE
T ss_pred CceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEE
Confidence 6789999987765544333 2222 346699999988644334577777776554 333432 223 3477788888
Q ss_pred EEEeC--CCCEEEEecCCCCC
Q 011916 438 VTGAG--DETLRFWNVFPSLK 456 (475)
Q Consensus 438 ~s~s~--Dg~I~iW~~~~~~~ 456 (475)
+-++. .+.|..-+++...+
T Consensus 238 y~~~~~~~~~i~~~~~DG~~r 258 (302)
T 3s25_A 238 FYQRGGDNPALCVVKNDGTGF 258 (302)
T ss_dssp EEEECSSSCEEEEEETTSCCC
T ss_pred EEEECCCCcEEEEEECCCCcc
Confidence 76532 34555556655443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.23 Score=52.98 Aligned_cols=228 Identities=16% Similarity=0.153 Sum_probs=134.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe-cCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF-GGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
...|.+|.-..+| +|.+|+.+| +..||-...+..... ......|.++.-+ ...|..|+.+| +..||... .....
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~-~~f~~ 96 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYSTQQHFTYGENNNTRIYCGVIIDNTYLYMGTDNG-ILVYNYRA-DRYEQ 96 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCEEECSCTTSTTSSCEEEEEEETTTEEEEEETTE-EEEEETTT-TEECC
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCceEEEEccCCCCCceEEEEEEcCCCcEEEEeCCC-eEEEeCCC-CEEEC
Confidence 4679999887777 477788887 556774332211111 1123468887764 46777777665 78899863 22111
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec-----cccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-----HTAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-----h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
........|.++.. .+| .|..++.+ -|..+|..+++. ..+.. ....|.++....++...+.+ . +-|
T Consensus 97 ~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigt----~-~Gl 167 (758)
T 3ott_A 97 PETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL-TSFDTRRNGLPNNTIYSIIRTKDNQIYVGT----Y-NGL 167 (758)
T ss_dssp CSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE-EEECHHHHCCSCSCEEEEEECTTCCEEEEE----T-TEE
T ss_pred cccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE-EEeccCCCCcCCCeEEEEEEcCCCCEEEEe----C-CCH
Confidence 11112235777754 344 56666665 688899876553 23311 13468888888888744433 3 457
Q ss_pred EEEECCCCceeeee-c-----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCC
Q 011916 362 RFWNTSNGHQLNSV-D-----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ 435 (475)
Q Consensus 362 ~iwd~~~~~~~~~~-~-----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~ 435 (475)
..+|..+++..... . ....|.++....++..|.+ |.. +.|..+|..+.+...........|.++....+|.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWi--gt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~ 244 (758)
T 3ott_A 168 CRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWI--GTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGD 244 (758)
T ss_dssp EEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEE--EEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCC
T ss_pred hhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEE--EEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCC
Confidence 78887766533211 1 1124778888777776555 433 4688888776543221111234588888888887
Q ss_pred EEEEEeCCCCEEEEecCCC
Q 011916 436 TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 436 ~l~s~s~Dg~I~iW~~~~~ 454 (475)
+.+. +.+ -|.+++....
T Consensus 245 lWig-T~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 245 LLAG-TDN-GLYVYHNDTT 261 (758)
T ss_dssp EEEE-ETT-EEEEECCTTS
T ss_pred EEEE-eCC-ceeEEecCCC
Confidence 6654 444 4777776543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.019 Score=54.06 Aligned_cols=217 Identities=12% Similarity=0.123 Sum_probs=111.0
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC----C-----CeEEEEECCCCeeeEE--ecCCCCceEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN----L-----GQVQVWDGTQCKRVRT--FGGHQTRAGV 256 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~----d-----g~v~iwd~~~~~~~~~--~~~h~~~v~~ 256 (475)
..+.+||..+.+...+-.+.....-.+++. -++.+++.|+. + ..+.+||..+.+-... +.........
T Consensus 39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~ 117 (308)
T 1zgk_A 39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 117 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred ceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEE
Confidence 479999999988776644322211112222 26777777765 2 4588999887653322 2222223344
Q ss_pred EEeCCCEEEEEeCC-----CcEEEEECCCCCccEE--EecCccCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 011916 257 LAWNSRILSSGSRD-----RNILQHDLRVSSDYIC--KLAGHKSEVCGLKWSHDDRELASGGND-----NQLLVWNQHSQ 324 (475)
Q Consensus 257 l~~~~~~l~sgs~d-----g~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~~~~ 324 (475)
+..++.+++.|+.+ ..+.+||+... .... .+......-..+.+ ++.+++.|+.+ +.+.+||+.+.
T Consensus 118 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 194 (308)
T 1zgk_A 118 GVIDGHIYAVGGSHGCIHHNSVERYEPERD-EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERN 194 (308)
T ss_dssp EEETTEEEEECCEETTEECCCEEEEETTTT-EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred EEECCEEEEEcCCCCCcccccEEEECCCCC-eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCC
Confidence 45577888887754 35788888632 2111 11111111222233 56677777654 46899998876
Q ss_pred ceeEE--EeccccceeEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeEEEEE
Q 011916 325 QPTLR--LTEHTAAVKAIAWSPHQSSLLASGGGTA---DRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 325 ~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~Gs~---d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~ 397 (475)
+-... +.........+.+ +..|++.||... -..+.+||+.+.+-... +.....-..++.. ++ .|++..
T Consensus 195 ~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~G 269 (308)
T 1zgk_A 195 EWRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QG-RIYVLG 269 (308)
T ss_dssp EEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEEC
T ss_pred eEeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE-CC-EEEEEc
Confidence 43221 1111111122233 344777775111 25689999887643322 1111111122222 33 444442
Q ss_pred ecC----CCeEEEEECCCCc
Q 011916 398 GYS----QNQIMVWKYPSMA 413 (475)
Q Consensus 398 g~~----dg~I~iwd~~~~~ 413 (475)
|.. ...+.+||..+.+
T Consensus 270 G~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 270 GYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CBCSSCBCCEEEEEETTTTE
T ss_pred CcCCCcccceEEEEcCCCCE
Confidence 322 2457888887654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.33 Score=51.79 Aligned_cols=264 Identities=10% Similarity=0.035 Sum_probs=150.6
Q ss_pred ceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-
Q 011916 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG- 248 (475)
Q Consensus 170 ~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~- 248 (475)
.+.++.-..+..|-++.++.++.||..+.+...... .....|.++.. .+| .|.+|+.+ -|..+|..+++......
T Consensus 64 ~i~~i~~d~~g~lWigT~~Gl~~yd~~~~~f~~~~~-~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~ 139 (758)
T 3ott_A 64 RIYCGVIIDNTYLYMGTDNGILVYNYRADRYEQPET-DFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTR 139 (758)
T ss_dssp CEEEEEEETTTEEEEEETTEEEEEETTTTEECCCSC-CCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHH
T ss_pred eEEEEEEcCCCcEEEEeCCCeEEEeCCCCEEECccc-CCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccC
Confidence 456655555544444456679999998875433111 12345777754 344 57778776 58889987655433211
Q ss_pred ---CCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecC------ccCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 249 ---GHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAG------HKSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 249 ---~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
.....|.++..+ ...|..|+.+ -|..++... .. ...+.. ....|.++....++..|..|+. +-|..
T Consensus 140 ~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~-~~-~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~ 215 (758)
T 3ott_A 140 RNGLPNNTIYSIIRTKDNQIYVGTYN-GLCRYIPSN-GK-FEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQ 215 (758)
T ss_dssp HHCCSCSCEEEEEECTTCCEEEEETT-EEEEEETTT-TE-EEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEE
T ss_pred CCCcCCCeEEEEEEcCCCCEEEEeCC-CHhhCccCC-Cc-eEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeE
Confidence 123467888775 4555556654 477777652 22 222211 1224888888777776555664 45888
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------CCCCeeEEEEcCCC
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--------TGSQVCNLAWSKNV 390 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--------~~~~v~~l~~s~~~ 390 (475)
+|..+++...........|.++....+|...+.+ ++-+.+++..+++...... ....|.++....+|
T Consensus 216 ~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g 290 (758)
T 3ott_A 216 YFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-----DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH 290 (758)
T ss_dssp EETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-----TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC
T ss_pred EcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-----CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC
Confidence 9987765322111124568888888888744443 3458888887665432211 12358888888888
Q ss_pred CeEEEEEecCCCeEEEEECCCCceEEEec-----CCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 391 NELVSTHGYSQNQIMVWKYPSMAKVSTLT-----GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 391 ~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-----~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
...+. ...| +.++.....-...... .....|.++.-..+|.+.+. +.+| +..++..
T Consensus 291 ~lWiG---T~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~ 351 (758)
T 3ott_A 291 NIWLG---TDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDP 351 (758)
T ss_dssp CEEEE---ESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCT
T ss_pred CEEEE---eCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccc
Confidence 76664 3445 5554432211111111 12346888888888876554 4555 5555443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.022 Score=53.58 Aligned_cols=225 Identities=11% Similarity=0.087 Sum_probs=109.9
Q ss_pred CCCEEEEEeCC----CeEEEEECCCCeeeEE--ecCCCCceEEEEeCCCEEEEEeC----C-----CcEEEEECCCCCcc
Q 011916 220 EGSYISVGTNL----GQVQVWDGTQCKRVRT--FGGHQTRAGVLAWNSRILSSGSR----D-----RNILQHDLRVSSDY 284 (475)
Q Consensus 220 dg~~la~g~~d----g~v~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~l~sgs~----d-----g~I~iwd~~~~~~~ 284 (475)
++.+++.|+.+ ..+.+||..+.+-... +.........+..++.+++.|+. + ..+.+||+... ..
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~-~W 102 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-QW 102 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT-EE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCC-eE
Confidence 55666666632 3588899877654332 22111222334457777777776 2 46788888632 21
Q ss_pred EEE--ecCccCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecC
Q 011916 285 ICK--LAGHKSEVCGLKWSHDDRELASGGND-----NQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 285 ~~~--~~~h~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
... +.........+.+ ++++++.|+.+ ..+.+||..+.+-... +.........+.+ +..|++.||-
T Consensus 103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~ 177 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGF 177 (308)
T ss_dssp EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCB
T ss_pred eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE---CCEEEEEeCC
Confidence 111 1111112222233 66677777643 4688999887643221 1111111122223 3447777651
Q ss_pred CC---CCeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEEE--ecCCCcc
Q 011916 356 TA---DRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNELVSTHGYS----QNQIMVWKYPSMAKVST--LTGHSLR 424 (475)
Q Consensus 356 s~---d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~~--l~~h~~~ 424 (475)
.. -..+.+||+.+.+-... +.....-.+++.. ++ .|++..|.. ...+.+||+.+.+-... +......
T Consensus 178 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 255 (308)
T 1zgk_A 178 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HN-CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSA 255 (308)
T ss_dssp CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred CCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CC-EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccc
Confidence 11 24688999877643222 1111111122222 34 444442332 25689999887654322 1111111
Q ss_pred eEEEEECCCCCEEEEEeCCC-----CEEEEecCCC
Q 011916 425 VLYLATSPDGQTIVTGAGDE-----TLRFWNVFPS 454 (475)
Q Consensus 425 V~~l~~spdg~~l~s~s~Dg-----~I~iW~~~~~ 454 (475)
...+.+ ++++++.|+.++ .|.+||+...
T Consensus 256 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 256 LGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred eEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 122222 677777776543 4667776654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.36 Score=48.79 Aligned_cols=269 Identities=13% Similarity=0.115 Sum_probs=154.9
Q ss_pred CceeccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeC-C-----------------------CCCc
Q 011916 156 PHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL-G-----------------------PGDS 211 (475)
Q Consensus 156 p~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~-~-----------------------~~~~ 211 (475)
..++.-+|+-.|+||.. .++|..|.|+|+-+.+++..+.+.. . ..+.
T Consensus 57 a~k~~v~pG~~Deyy~f---------~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD 127 (638)
T 3sbq_A 57 KQKIHVGPGELDDYYGF---------WSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGD 127 (638)
T ss_dssp -CCCCCCTTCCCSEEEE---------EECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCC
T ss_pred ccccccCCCCcccEEEE---------eecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCC
Confidence 45667777777777743 4556678888888888777665532 0 0011
Q ss_pred E--EEEEEcC---CCCEEEEEeC-CCeEEEEECCCCeeeEEecC-CCCceEEEEe----CCCEEEEEeC-------CCcE
Q 011916 212 V--CSVQWTR---EGSYISVGTN-LGQVQVWDGTQCKRVRTFGG-HQTRAGVLAW----NSRILSSGSR-------DRNI 273 (475)
Q Consensus 212 V--~~v~~sp---dg~~la~g~~-dg~v~iwd~~~~~~~~~~~~-h~~~v~~l~~----~~~~l~sgs~-------dg~I 273 (475)
. ..+++.. ||+||++-.. +..|-..++...++-+.+.- ....+..+.+ +-.+++.+++ ||..
T Consensus 128 ~HHp~~S~tdg~yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~ 207 (638)
T 3sbq_A 128 CHHPHISMTDGKYDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKV 207 (638)
T ss_dssp CCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSC
T ss_pred cCCCcccccCCeeeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcc
Confidence 1 1344432 6788888764 57788889888887766652 3445666666 3367777664 3332
Q ss_pred EEEECCCCCcc--EEEecCcc----------CCEEEEEEcCCCCEEEEEeCC---------------CcEEEEEC-----
Q 011916 274 LQHDLRVSSDY--ICKLAGHK----------SEVCGLKWSHDDRELASGGND---------------NQLLVWNQ----- 321 (475)
Q Consensus 274 ~iwd~~~~~~~--~~~~~~h~----------~~V~~l~~s~~~~~lasg~~D---------------g~I~iwd~----- 321 (475)
. .+....+. ...+.+.+ +..-.+...++|.+.++.+.. ..+.++++
T Consensus 208 ~--~~~~~~~y~~f~~iD~~tm~v~~Qv~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~ 285 (638)
T 3sbq_A 208 F--DLQDENSYTMYNAIDAETMEMAFQVIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEA 285 (638)
T ss_dssp C--CTTSTTEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHH
T ss_pred c--ccCChhhceEEEEEcCCccEEEEEEEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHH
Confidence 1 01111111 00111111 112233446667776665431 12444443
Q ss_pred --------------------CC----CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC------c-
Q 011916 322 --------------------HS----QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG------H- 370 (475)
Q Consensus 322 --------------------~~----~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~------~- 370 (475)
+. +..+..+-.-......+..+|||++++++|. .+.++.++|+... +
T Consensus 286 ~vk~G~~~~~~g~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GK--LsptvtV~d~~k~~~~~~~k~ 363 (638)
T 3sbq_A 286 AVKAGDFITLGDSKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGK--LSPTCSMIAIDKLPDLFAGKL 363 (638)
T ss_dssp HHHTTCCBCCTTCCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHHTTCC
T ss_pred HHhcCCeEEECCCCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCC--CCCeEEEEEeehhhhhhhccc
Confidence 22 1111111122234467889999999999865 8999999998742 1
Q ss_pred ------eeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC----------ceEEEecCCCcceEEEEE----
Q 011916 371 ------QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----------AKVSTLTGHSLRVLYLAT---- 430 (475)
Q Consensus 371 ------~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----------~~~~~l~~h~~~V~~l~~---- 430 (475)
.....+.+-.....+|.++|. .++ +-+-|.+|..|++... ..+..+.-|-.+- .+.-
T Consensus 364 ~~~~~~~~ae~e~GlGPlHt~Fd~~G~-aYT-tlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpG-H~~~~~ge 440 (638)
T 3sbq_A 364 ADPRDVIVGEPELGLGPLHTTFDGRGN-AYT-TLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPG-HLHASLCE 440 (638)
T ss_dssp SCGGGGEEECCBCCSCEEEEEECSSSE-EEE-EETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEE-EEEETTTT
T ss_pred cCcccceEeeccCCCcccEEEECCCCc-eEe-eeeecceEEEEeccHHHHHhcCccCCeeeeccccccCCc-ccccCCCc
Confidence 134455677788999999993 333 2788999999998643 3455555454332 2222
Q ss_pred --CCCCCEEEEE
Q 011916 431 --SPDGQTIVTG 440 (475)
Q Consensus 431 --spdg~~l~s~ 440 (475)
.+||++|++.
T Consensus 441 t~~~dGk~lv~l 452 (638)
T 3sbq_A 441 TNEADGKWLVAL 452 (638)
T ss_dssp STTCCSCEEEEE
T ss_pred cCCCCccEEEEe
Confidence 4677777776
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.24 Score=47.63 Aligned_cols=170 Identities=12% Similarity=0.116 Sum_probs=101.0
Q ss_pred CCCcEEEEECCCCCccEEE--ecC-----ccCCEEEEEEcC--CCC-EEEEEe-C--CCcEEEEECCCCce----eEEEe
Q 011916 269 RDRNILQHDLRVSSDYICK--LAG-----HKSEVCGLKWSH--DDR-ELASGG-N--DNQLLVWNQHSQQP----TLRLT 331 (475)
Q Consensus 269 ~dg~I~iwd~~~~~~~~~~--~~~-----h~~~V~~l~~s~--~~~-~lasg~-~--Dg~I~iwd~~~~~~----~~~~~ 331 (475)
.+|.|.++|.......... +.+ ..-...+|.+.+ ++. +|+++. . +..|.+|++..... +..+.
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~ 160 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR 160 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence 6899999998743222222 222 234677888766 454 444442 2 45778877764322 22232
Q ss_pred cc-ccceeEEEECCCCCcEEEEecC---------------CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEE
Q 011916 332 EH-TAAVKAIAWSPHQSSLLASGGG---------------TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 332 ~h-~~~v~~l~~sp~~~~ll~sg~G---------------s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 395 (475)
+. -...+++++.++|. ++++... ...+.|..+|. ++.......-.....++|+||++.|++
T Consensus 161 g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~~~~~~~l~~pNGia~spDg~~lYv 237 (355)
T 3sre_A 161 HKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYI 237 (355)
T ss_dssp CTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCCEEEEEEESSEEEEEECTTSSEEEE
T ss_pred cCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCCccEEEEEEC--CeEEEeecCCcccCcceECCCCCEEEE
Confidence 21 24578999999988 4444321 01355666665 333222333356788999999999888
Q ss_pred EEecCCCeEEEEECCC-Cce--EEEecCCCcceEEEEECC-CCCEEEEEeCC
Q 011916 396 THGYSQNQIMVWKYPS-MAK--VSTLTGHSLRVLYLATSP-DGQTIVTGAGD 443 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~-~~~--~~~l~~h~~~V~~l~~sp-dg~~l~s~s~D 443 (475)
+ .+..+.|..|++.. ++. ...+ ...+..-.+++.+ +|.+.+++..+
T Consensus 238 a-dt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 238 A-ELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp E-EGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred E-eCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 5 44678999999863 322 2233 2245678899999 59888766544
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.072 Score=50.14 Aligned_cols=208 Identities=9% Similarity=0.072 Sum_probs=98.7
Q ss_pred EEEEEeCCCeEEEEECCCCeeeE-EecCC--CCceEEEEeCCCEEEEEeC-----C------CcEEEEECCCCCccEEEe
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVR-TFGGH--QTRAGVLAWNSRILSSGSR-----D------RNILQHDLRVSSDYICKL 288 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~-~~~~h--~~~v~~l~~~~~~l~sgs~-----d------g~I~iwd~~~~~~~~~~~ 288 (475)
+++.|+ ..+.+||..+.+-.. .+... ......+..++.+++.|+. . ..+.+||... ... ..+
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~-~~W-~~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLD-SEW-LGM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTT-TEE-EEC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCC-CeE-EEC
Confidence 344555 579999998876433 22211 1222233346788888873 1 1267788763 222 222
Q ss_pred cCcc---CCEEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCceeEE--EeccccceeEEEECCCCCcEEEEecC
Q 011916 289 AGHK---SEVCGLKWSHDDRELASGGND--------NQLLVWNQHSQQPTLR--LTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 289 ~~h~---~~V~~l~~s~~~~~lasg~~D--------g~I~iwd~~~~~~~~~--~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
..-. .....+.+ ++..++.|+.+ +.+.+||..+.+-... +.........+. -++ .+++.||.
T Consensus 83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~-~iyv~GG~ 157 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS--HMD-LVYVIGGK 157 (315)
T ss_dssp CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETT-EEEEECCB
T ss_pred CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE--ECC-EEEEEeCC
Confidence 1111 11112222 56677777732 4689999987643211 111111111222 233 47777751
Q ss_pred CC----CCeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeEEEEEecCCC----eEEEEECCCCceEEEecCCCcc-
Q 011916 356 TA----DRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNELVSTHGYSQN----QIMVWKYPSMAKVSTLTGHSLR- 424 (475)
Q Consensus 356 s~----d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~~dg----~I~iwd~~~~~~~~~l~~h~~~- 424 (475)
.. -..+.+||..+.+-... +.....-..++.. ++ .|++..|..+. .+.+||..+.+-...-.....+
T Consensus 158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 235 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DG-RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235 (315)
T ss_dssp CTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TT-EEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB
T ss_pred CCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CC-EEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 11 24689999887642221 1111111122222 34 44444343332 5888998776443322111111
Q ss_pred -eEEEEECCCCCEEEEEeCC
Q 011916 425 -VLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 425 -V~~l~~spdg~~l~s~s~D 443 (475)
...+.+ ++++++.|+.+
T Consensus 236 ~~~~~~~--~~~l~v~GG~~ 253 (315)
T 4asc_A 236 SLSLVSL--VGTLYAIGGFA 253 (315)
T ss_dssp SCEEEEE--TTEEEEEEEEE
T ss_pred ceeEEEE--CCEEEEECCcc
Confidence 122223 66777777764
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.052 Score=52.11 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=51.9
Q ss_pred CCCEEEEEc--CCeEEEEECCC--CcEEEEeeCC-CC-CcEEEEEEcCCCCEEEEEeC-C---------CeEEEEECCCC
Q 011916 178 SQNVLAVGL--GTCVYLWTASN--SKVTRLCDLG-PG-DSVCSVQWTREGSYISVGTN-L---------GQVQVWDGTQC 241 (475)
Q Consensus 178 ~~~~la~~~--~~~V~lw~~~~--~~~~~~~~~~-~~-~~V~~v~~spdg~~la~g~~-d---------g~v~iwd~~~~ 241 (475)
.+.+++.|. ++.++++|..+ .+...+..+. .. ....++.+ ++++++.|+. + ..+.+||+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 445545443 46899999974 6665554433 22 12222222 5777777765 2 46889998876
Q ss_pred eeeEE--ec-CCCCceEEEEeCCCEEEEEeCC
Q 011916 242 KRVRT--FG-GHQTRAGVLAWNSRILSSGSRD 270 (475)
Q Consensus 242 ~~~~~--~~-~h~~~v~~l~~~~~~l~sgs~d 270 (475)
+-... +. .......++..++.+++.|+.+
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence 54332 22 1122233455688888888865
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.45 Score=47.42 Aligned_cols=103 Identities=10% Similarity=0.040 Sum_probs=59.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEecC------CCCceEEEEeC-----CCEEEEEeC-------
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--RTFGG------HQTRAGVLAWN-----SRILSSGSR------- 269 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--~~~~~------h~~~v~~l~~~-----~~~l~sgs~------- 269 (475)
....+|+|.|+|+++++-...+.|.+++..+++.. ..+.. .......|+|+ +..|.....
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 45679999999986665544357888886555432 22221 23566789997 445544432
Q ss_pred ------CCcEEEEECCCCC------ccEE-EecC-ccCCEEEEEEcCCCCEEEEEeC
Q 011916 270 ------DRNILQHDLRVSS------DYIC-KLAG-HKSEVCGLKWSHDDRELASGGN 312 (475)
Q Consensus 270 ------dg~I~iwd~~~~~------~~~~-~~~~-h~~~V~~l~~s~~~~~lasg~~ 312 (475)
...|.-+++.... +.+. .+.. .......|.|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 1345555543211 1111 1221 1234789999999987776553
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.074 Score=52.02 Aligned_cols=141 Identities=9% Similarity=0.114 Sum_probs=97.2
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCC---CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------------
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGP---GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK------------ 242 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~---~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~------------ 242 (475)
.+.-+.+..++.|+.-++..+..-+.+...+ -+.|..+..+|+|++||+.+. ..|.|-.+..+.
T Consensus 31 n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~ 109 (452)
T 3pbp_A 31 NGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAF 109 (452)
T ss_dssp TTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTT
T ss_pred CCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCccccccccc
Confidence 3455666667889988887554445555442 336788999999999999876 578888876321
Q ss_pred eeEEecC------CCCceEEEEeC-----CCEEEEEeCCCcEEEEECCCCCccEEEec---------CccCCEEEEEEcC
Q 011916 243 RVRTFGG------HQTRAGVLAWN-----SRILSSGSRDRNILQHDLRVSSDYICKLA---------GHKSEVCGLKWSH 302 (475)
Q Consensus 243 ~~~~~~~------h~~~v~~l~~~-----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---------~h~~~V~~l~~s~ 302 (475)
..+.+.- ...+|..+.|+ +..|++-..|+.|++||+.........+. .....|.+++|..
T Consensus 110 q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~ 189 (452)
T 3pbp_A 110 QIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSK 189 (452)
T ss_dssp EEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECT
T ss_pred ceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcC
Confidence 1223331 35679999996 47999999999999999985332111222 2236799999999
Q ss_pred CCCEEEEEe--CCCcEEEE
Q 011916 303 DDRELASGG--NDNQLLVW 319 (475)
Q Consensus 303 ~~~~lasg~--~Dg~I~iw 319 (475)
++-.|...+ ..|.|+-.
T Consensus 190 ~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 190 DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TSSCEEEEECTTSCEEEEE
T ss_pred CCcEEEEEecCCCCCEEEE
Confidence 887666654 77887753
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.026 Score=54.20 Aligned_cols=232 Identities=12% Similarity=0.062 Sum_probs=108.1
Q ss_pred CCCEEEEEeC-CCeEEEEECCC--C--eeeEEec-CCCCceEEEEeCCCEEEEEeC-C---------CcEEEEECCCCCc
Q 011916 220 EGSYISVGTN-LGQVQVWDGTQ--C--KRVRTFG-GHQTRAGVLAWNSRILSSGSR-D---------RNILQHDLRVSSD 283 (475)
Q Consensus 220 dg~~la~g~~-dg~v~iwd~~~--~--~~~~~~~-~h~~~v~~l~~~~~~l~sgs~-d---------g~I~iwd~~~~~~ 283 (475)
++++++.|+. ...+.+||..+ . +.+..+. .......++..++.+++.|+. + ..+.+||+... .
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~-~ 97 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN-S 97 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTT-E
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCC-c
Confidence 4555555543 24688888763 2 2222222 122223344557777777776 2 46888888732 2
Q ss_pred cEEE--ec-CccCCEEEEEEcCCCCEEEEEeCC---------------------------------------CcEEEEEC
Q 011916 284 YICK--LA-GHKSEVCGLKWSHDDRELASGGND---------------------------------------NQLLVWNQ 321 (475)
Q Consensus 284 ~~~~--~~-~h~~~V~~l~~s~~~~~lasg~~D---------------------------------------g~I~iwd~ 321 (475)
.... +. .......++. .++++++.|+.+ +.+.+||.
T Consensus 98 W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~ 175 (357)
T 2uvk_A 98 WVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP 175 (357)
T ss_dssp EEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred EEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence 2111 11 1111222222 467788888764 57899999
Q ss_pred CCCceeEEEecc-ccce-eEEEECCCCCcEEEEecCC----CCCeEEEEEC--CCCc--eeeeecCCC-CeeEEEEcCCC
Q 011916 322 HSQQPTLRLTEH-TAAV-KAIAWSPHQSSLLASGGGT----ADRCIRFWNT--SNGH--QLNSVDTGS-QVCNLAWSKNV 390 (475)
Q Consensus 322 ~~~~~~~~~~~h-~~~v-~~l~~sp~~~~ll~sg~Gs----~d~~I~iwd~--~~~~--~~~~~~~~~-~v~~l~~s~~~ 390 (475)
.+.+-...-... .... .+++.. +..|++.||.. ....+.+||+ .+.+ .+..+.... .....+...++
T Consensus 176 ~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~ 253 (357)
T 2uvk_A 176 STQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253 (357)
T ss_dssp TTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred CCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence 876533221111 1111 222222 33477776411 1345777876 3332 111111111 11111222234
Q ss_pred CeEEEEEecCC---------------------CeEEEEECCCC--ceEEEecCCCcceEEEEECCCCCEEEEEeCCC---
Q 011916 391 NELVSTHGYSQ---------------------NQIMVWKYPSM--AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE--- 444 (475)
Q Consensus 391 ~~l~~~~g~~d---------------------g~I~iwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg--- 444 (475)
+ |++..|... ..+.+||..+. +.+..+......-..+ ..++++++.|+.++
T Consensus 254 ~-iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~ 330 (357)
T 2uvk_A 254 S-LIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSL--PWNNSLLIIGGETAGGK 330 (357)
T ss_dssp E-EEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEE--EETTEEEEEEEECGGGC
T ss_pred E-EEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeE--EeCCEEEEEeeeCCCCC
Confidence 4 444323211 25788998764 3444443222222222 23778888888653
Q ss_pred ---CEEEEecCCCCCCCC
Q 011916 445 ---TLRFWNVFPSLKAPA 459 (475)
Q Consensus 445 ---~I~iW~~~~~~~~~~ 459 (475)
.|.++++++++....
T Consensus 331 ~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 331 AVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp EEEEEEEEEC-CCSCEEE
T ss_pred EeeeEEEEEEcCcEeEee
Confidence 345557776665443
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.081 Score=49.87 Aligned_cols=221 Identities=10% Similarity=0.128 Sum_probs=103.6
Q ss_pred EEEEEeCCCeEEEEECCCCeeeE-EecCCC--CceEEEEeCCCEEEEEeC----CC-------cEEEEECCCCCccEEEe
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVR-TFGGHQ--TRAGVLAWNSRILSSGSR----DR-------NILQHDLRVSSDYICKL 288 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~-~~~~h~--~~v~~l~~~~~~l~sgs~----dg-------~I~iwd~~~~~~~~~~~ 288 (475)
.++.|+. .+.+||..+.+-.. .+.... .....+..++.+++.|+. ++ .+.+||... ... ..+
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~-~~W-~~~ 93 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVS-SEW-VGL 93 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTT-TEE-EEC
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCC-CcE-EEC
Confidence 3444443 48899988876543 122111 122233346788888873 12 167778763 222 222
Q ss_pred c---CccCCEEEEEEcCCCCEEEEEeCC-------CcEEEEECCCCceeEEEeccccce-eEEEECCCCCcEEEEecCC-
Q 011916 289 A---GHKSEVCGLKWSHDDRELASGGND-------NQLLVWNQHSQQPTLRLTEHTAAV-KAIAWSPHQSSLLASGGGT- 356 (475)
Q Consensus 289 ~---~h~~~V~~l~~s~~~~~lasg~~D-------g~I~iwd~~~~~~~~~~~~h~~~v-~~l~~sp~~~~ll~sg~Gs- 356 (475)
. ........+.+ ++..++.|+.+ ..+.+||..+.+-...-....... .+++. .+ ..|++.||-.
T Consensus 94 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~ 169 (318)
T 2woz_A 94 PPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HN-GMIYCLGGKTD 169 (318)
T ss_dssp SCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ET-TEEEEECCEES
T ss_pred CCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-EC-CEEEEEcCCCC
Confidence 1 11111222222 56777777754 358889988765332111000000 11222 23 3477776411
Q ss_pred ---CCCeEEEEECCCCceeee--ecCCCCeeEEEEcCCCCeEEEEEecCC----CeEEEEECCCCceEE--EecCCCcce
Q 011916 357 ---ADRCIRFWNTSNGHQLNS--VDTGSQVCNLAWSKNVNELVSTHGYSQ----NQIMVWKYPSMAKVS--TLTGHSLRV 425 (475)
Q Consensus 357 ---~d~~I~iwd~~~~~~~~~--~~~~~~v~~l~~s~~~~~l~~~~g~~d----g~I~iwd~~~~~~~~--~l~~h~~~V 425 (475)
.-..+.+||+.+.+-... ......-.+++.. ++ .|++..|..+ ..+.+||..+.+-.. .+.......
T Consensus 170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~ 247 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KG-KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSI 247 (318)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TT-EEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSC
T ss_pred CCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CC-EEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccce
Confidence 124589999887643222 1111111122222 33 4444434332 357789987764332 121111111
Q ss_pred EEEEECCCCCEEEEEeCC--------------CCEEEEecCCCC
Q 011916 426 LYLATSPDGQTIVTGAGD--------------ETLRFWNVFPSL 455 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~D--------------g~I~iW~~~~~~ 455 (475)
..+. .++++++.|+.+ ..+.+||+....
T Consensus 248 ~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 248 SLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp EEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred EEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 2222 256777777654 246677766543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.027 Score=53.88 Aligned_cols=110 Identities=9% Similarity=-0.055 Sum_probs=70.6
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEecCC-CCceEEEEe----CCCEEEEE--eCCCcEEEEECCCCCccEEEecC----
Q 011916 222 SYISVGTNLGQVQVWDGTQCKRVRTFGGH-QTRAGVLAW----NSRILSSG--SRDRNILQHDLRVSSDYICKLAG---- 290 (475)
Q Consensus 222 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~~~v~~l~~----~~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~---- 290 (475)
..+++++.||.|.-+|.++|+...+++.. ..++....- .+..++.+ +.||.|..++... +.....+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~-G~~~~~~~~~~lv 89 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQ-GLQKLPLSIRQLV 89 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTT-EEEEEEEEHHHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCC-CcEEeeeccccce
Confidence 47899999999999999999999988754 122222211 12234444 5899999999863 322222111
Q ss_pred ccCCEEE---EEE-----cCCCCEEEEEeCCCcEEEEECCCCceeEEEec
Q 011916 291 HKSEVCG---LKW-----SHDDRELASGGNDNQLLVWNQHSQQPTLRLTE 332 (475)
Q Consensus 291 h~~~V~~---l~~-----s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~ 332 (475)
...++.. ... ...+..+++|+.+|.+...|+++|+.+..+..
T Consensus 90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1112221 000 01355888999999999999999999988864
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.012 Score=56.38 Aligned_cols=200 Identities=8% Similarity=-0.007 Sum_probs=108.6
Q ss_pred cCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEE--cC-CCCEEEEE-eCCCeEEEEECCCCeeeEEecC-
Q 011916 176 WSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQW--TR-EGSYISVG-TNLGQVQVWDGTQCKRVRTFGG- 249 (475)
Q Consensus 176 ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~--sp-dg~~la~g-~~dg~v~iwd~~~~~~~~~~~~- 249 (475)
|.-+ .+++++.||.|+-.|..+|+..=.+......++....- .+ ++..++.. +.||.|..++..+|.....+..
T Consensus 7 ~~~~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~ 86 (339)
T 2be1_A 7 LSLSDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIR 86 (339)
T ss_dssp SEEEEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHH
T ss_pred ceeCCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccc
Confidence 4433 56777889999999999998766654331122222110 01 23333343 5899999999988865544431
Q ss_pred ---CCCceEE---EEe-------CCCEEEEEeCCCcEEEEECCCCCccEEEecCcc--C-----CEEEEEEc-----CCC
Q 011916 250 ---HQTRAGV---LAW-------NSRILSSGSRDRNILQHDLRVSSDYICKLAGHK--S-----EVCGLKWS-----HDD 304 (475)
Q Consensus 250 ---h~~~v~~---l~~-------~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~--~-----~V~~l~~s-----~~~ 304 (475)
...++.. ... .+..+++|+.+|.+...|++ .++.+..+.... . ...|.... ..+
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~-tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINML-NGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETT-TCCEEEEESTTCBCC--------------------C
T ss_pred cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECC-CCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 1122221 001 46788999999999999998 555555554321 1 00111110 123
Q ss_pred CEEEEEeCCCcEEEEECCCCceeEEEe-----ccccc--e-eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee-ee
Q 011916 305 RELASGGNDNQLLVWNQHSQQPTLRLT-----EHTAA--V-KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN-SV 375 (475)
Q Consensus 305 ~~lasg~~Dg~I~iwd~~~~~~~~~~~-----~h~~~--v-~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~-~~ 375 (475)
..++.+..+..+.+.+ ++++ +..+. ..... + .....+.++..++. . .|+.|.-+|..+|..+. ..
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~-~---~dg~v~A~d~~~G~~~W~~~ 239 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAP-F---RDKSLLASDLDFRIARWVSP 239 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEE-E---TTTEEEEECSTTCCEEEECC
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEE-C---CCCEEEEEECCCCcEEEEee
Confidence 5677777666677666 4443 22211 00000 0 00011234565443 2 79999999999999887 55
Q ss_pred cCCCCee
Q 011916 376 DTGSQVC 382 (475)
Q Consensus 376 ~~~~~v~ 382 (475)
+..+++.
T Consensus 240 ~l~sPv~ 246 (339)
T 2be1_A 240 TFPGIIV 246 (339)
T ss_dssp CCSSCEE
T ss_pred cCCCCeE
Confidence 5555543
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.063 Score=52.49 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=78.8
Q ss_pred ECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-----CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc---
Q 011916 342 WSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-----SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA--- 413 (475)
Q Consensus 342 ~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-----~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~--- 413 (475)
.+.+|..+++. .++.||.-++......+.+... ..+..+..+|+|++|+.. .+..|.|..++.+.
T Consensus 28 ~~~n~t~i~~a----~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~---g~~~V~Vv~LP~~~~~~ 100 (452)
T 3pbp_A 28 SSQNGTRIVFI----QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF---NDNEIFVMEVPWGYSNV 100 (452)
T ss_dssp EETTTTEEEEE----ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE---CSSEEEEEECCTTCSCC
T ss_pred EEcCCCEEEEE----ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe---cCCeEEEEEecCccccC
Confidence 34455556655 5789999898755555555433 368889999999999985 46789999988331
Q ss_pred ---------eEEEecC------CCcceEEEEECCC---CCEEEEEeCCCCEEEEecCCCCCCC
Q 011916 414 ---------KVSTLTG------HSLRVLYLATSPD---GQTIVTGAGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 414 ---------~~~~l~~------h~~~V~~l~~spd---g~~l~s~s~Dg~I~iW~~~~~~~~~ 458 (475)
....+.- ...+|..+.|+|- +..|++-..|++||+||+......+
T Consensus 101 ~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P 163 (452)
T 3pbp_A 101 EDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKP 163 (452)
T ss_dssp CCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCC
T ss_pred cccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCC
Confidence 1122221 2467999999994 5689999999999999999754433
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.85 Score=46.12 Aligned_cols=228 Identities=9% Similarity=0.060 Sum_probs=136.6
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEecCCCC---------------------------ceEEEEe-----CCCEEEEEe-C
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVRTFGGHQT---------------------------RAGVLAW-----NSRILSSGS-R 269 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~~~~~h~~---------------------------~v~~l~~-----~~~~l~sgs-~ 269 (475)
.|.+|+..|.|+|+-+.+++.+..+.-... --..+++ +|++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 367788899999999999988876531110 0012333 356666665 4
Q ss_pred CCcEEEEECCCCCccEEEecCccCCEEEEEEc--CCCCEEEEEeC-------CCcEE------------EEECCCCceeE
Q 011916 270 DRNILQHDLRVSSDYICKLAGHKSEVCGLKWS--HDDRELASGGN-------DNQLL------------VWNQHSQQPTL 328 (475)
Q Consensus 270 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s--~~~~~lasg~~-------Dg~I~------------iwd~~~~~~~~ 328 (475)
+..|...+++.-......-....+.+.++.+- |+..+++.+++ ||... ..|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 56677777763322222233456778898886 67778888764 33311 11222222222
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCC------------CeEEEEE-------------------------CCC---
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTAD------------RCIRFWN-------------------------TSN--- 368 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d------------~~I~iwd-------------------------~~~--- 368 (475)
++.- .+........+++.+.++++-.++. ..+.++| .+.
T Consensus 232 Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~ 310 (638)
T 3sbq_A 232 QVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDG 310 (638)
T ss_dssp EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTT
T ss_pred EEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccc
Confidence 2211 2233445667888887777653321 2244444 332
Q ss_pred -C-ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-------------eEEEecCCCcceEEEEECCC
Q 011916 369 -G-HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-------------KVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 369 -~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-------------~~~~l~~h~~~V~~l~~spd 433 (475)
+ ..+..+......-.+..+|||+++++. |-.+..+.++|+.... .+.+.+ -....+..+|.++
T Consensus 311 ~~~~~~~~iP~pksPHGv~vsPDGkyi~v~-GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~ 388 (638)
T 3sbq_A 311 KDSKFTRYVPVPKNPHGCNTSSDGKYFIAA-GKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGR 388 (638)
T ss_dssp BCCSSEEEEEESSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSS
T ss_pred cCCceEEEEeCCCCCcceeeCCCCCEEEEc-CCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCC
Confidence 1 122222334455678899999999986 7788899999987421 133333 2345688999999
Q ss_pred CCEEEEEeCCCCEEEEecCC
Q 011916 434 GQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~ 453 (475)
|....|.--|..|.-|++..
T Consensus 389 G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 389 GNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SEEEEEETTTTEEEEEEHHH
T ss_pred CceEeeeeecceEEEEeccH
Confidence 95555566799999999975
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.83 Score=43.81 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=116.4
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeC----CCCCcEEEEEEcCC---CCEEEEEeC----C----CeEE
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDL----GPGDSVCSVQWTRE---GSYISVGTN----L----GQVQ 234 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~----~~~~~V~~v~~spd---g~~la~g~~----d----g~v~ 234 (475)
...++|.++ .++++..++.|++++ .+++ ..+..+ ........|+|+|+ +..|.++.. + +.|.
T Consensus 31 P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~ 108 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI 108 (354)
T ss_dssp EEEEEEEETTEEEEEETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred CeEEEEcCCCeEEEEeCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence 456888886 677777789999997 4454 222221 12356899999997 555555443 2 5677
Q ss_pred EEECCCC-------eee-EEec---CCCCceEEEEe--CCCEEEEEeC-------------CCcEEEEECCCCC------
Q 011916 235 VWDGTQC-------KRV-RTFG---GHQTRAGVLAW--NSRILSSGSR-------------DRNILQHDLRVSS------ 282 (475)
Q Consensus 235 iwd~~~~-------~~~-~~~~---~h~~~v~~l~~--~~~~l~sgs~-------------dg~I~iwd~~~~~------ 282 (475)
.|+.... +.+ ..+. .|. ...|+| ++.++++.+. .|.|.-++....-
T Consensus 109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf 186 (354)
T 3a9g_A 109 RGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF 186 (354)
T ss_dssp EEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred EEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence 7776543 111 1122 232 345666 5665555432 1445555543110
Q ss_pred -ccEEEecCccCCEEEEEEcC-CCCEEEEEeCCC---cEEEEECCC----------------CceeEEEeccccceeEEE
Q 011916 283 -DYICKLAGHKSEVCGLKWSH-DDRELASGGNDN---QLLVWNQHS----------------QQPTLRLTEHTAAVKAIA 341 (475)
Q Consensus 283 -~~~~~~~~h~~~V~~l~~s~-~~~~lasg~~Dg---~I~iwd~~~----------------~~~~~~~~~h~~~v~~l~ 341 (475)
.......+|. ....++|++ +++++++-...+ .|.+..... ..++..+.........++
T Consensus 187 ~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~ 265 (354)
T 3a9g_A 187 PNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS 265 (354)
T ss_dssp TTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred CCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence 0111122332 346899999 666555432221 233322110 023333311234567888
Q ss_pred EC-------CCCCcEEEEecCCCCCeEEEEECCCC-cee--eeec--CCCCeeEEEEcCCCCeEEE
Q 011916 342 WS-------PHQSSLLASGGGTADRCIRFWNTSNG-HQL--NSVD--TGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 342 ~s-------p~~~~ll~sg~Gs~d~~I~iwd~~~~-~~~--~~~~--~~~~v~~l~~s~~~~~l~~ 395 (475)
|. .++. ++++.. ..+.|...++... +.. ..+- ....+..+++.|+|..+++
T Consensus 266 ~y~g~~fp~~~G~-l~v~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~ 328 (354)
T 3a9g_A 266 FVHGDMFPGLRGW-LLIACL--RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIS 328 (354)
T ss_dssp ECCSSSCGGGTTE-EEEEET--TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEE
T ss_pred EECCCCCcccCCc-EEEEEc--CCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEE
Confidence 84 3454 555433 5778888888753 322 2222 2356889999999866555
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.24 Score=52.37 Aligned_cols=181 Identities=10% Similarity=0.166 Sum_probs=99.6
Q ss_pred CeEEEEECCCCcEEEEe-e-----CCCC-CcEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCeeeE--EecCCCC
Q 011916 188 TCVYLWTASNSKVTRLC-D-----LGPG-DSVCSVQWTREGSYISVGTNL------GQVQVWDGTQCKRVR--TFGGHQT 252 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~-~-----~~~~-~~V~~v~~spdg~~la~g~~d------g~v~iwd~~~~~~~~--~~~~h~~ 252 (475)
+.+++||..+++...+. . .... ..-..+.+..+++++++|+.+ ..+.+||..+.+-.. .+.....
T Consensus 412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~ 491 (695)
T 2zwa_A 412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF 491 (695)
T ss_dssp CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence 46999999998877665 3 1111 222333333277788888754 357899988754332 2222222
Q ss_pred ceEEEEe-CCCEEEEEeCCC--cEEEEECCCCCccEEEecC------ccCCEEEEEEcCC-CCEEEEEeC--C-----Cc
Q 011916 253 RAGVLAW-NSRILSSGSRDR--NILQHDLRVSSDYICKLAG------HKSEVCGLKWSHD-DRELASGGN--D-----NQ 315 (475)
Q Consensus 253 ~v~~l~~-~~~~l~sgs~dg--~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~s~~-~~~lasg~~--D-----g~ 315 (475)
.-.++.+ ++.+++.|+.++ .+.+||.... .. ..+.. ......++.+..+ +..++.||. + +.
T Consensus 492 ~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~-~W-~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~ 569 (695)
T 2zwa_A 492 RHSACSLPDGNVLILGGVTEGPAMLLYNVTEE-IF-KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDK 569 (695)
T ss_dssp SCEEEECTTSCEEEECCBCSSCSEEEEETTTT-EE-EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCE
T ss_pred cceEEEEcCCEEEEECCCCCCCCEEEEECCCC-ce-EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCc
Confidence 3344554 788888888655 6899998742 22 22211 1122233555554 667777765 2 45
Q ss_pred EEEEECCCCce-----eEEEec--cccce-eEEEECCCCCcEEEEecCC------CCCeEEEEECCCCce
Q 011916 316 LLVWNQHSQQP-----TLRLTE--HTAAV-KAIAWSPHQSSLLASGGGT------ADRCIRFWNTSNGHQ 371 (475)
Q Consensus 316 I~iwd~~~~~~-----~~~~~~--h~~~v-~~l~~sp~~~~ll~sg~Gs------~d~~I~iwd~~~~~~ 371 (475)
+.+||+.+... -..+.. ..... .+++...++ .|++.||.+ ....|.+||+.+.+-
T Consensus 570 v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 570 AIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPR-KLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETT-EEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred EEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCC-EEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 88999987761 111111 11111 122222223 477777521 235699999987654
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.09 E-value=2.5 Score=47.33 Aligned_cols=240 Identities=10% Similarity=0.035 Sum_probs=130.6
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEe-cCCCCceEEEEeC-------
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF-GGHQTRAGVLAWN------- 260 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~-~~h~~~v~~l~~~------- 260 (475)
.|++.+.........+....+..|...+.+ +.++++++ ++.+.++++..++..... ..-...|.|+++.
T Consensus 493 ~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~ 569 (1158)
T 3ei3_A 493 SVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNG 569 (1158)
T ss_dssp CEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTT
T ss_pred EEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcc
Confidence 466667665555545543334566666654 34677775 578888887765432211 1235579999983
Q ss_pred -CCEEEEEeC-CCcEEEEECCCCCccEEEec-CccCCEEEEEEc--CCCCEEEEEeCCCcEEEEECC--CCceeEE---E
Q 011916 261 -SRILSSGSR-DRNILQHDLRVSSDYICKLA-GHKSEVCGLKWS--HDDRELASGGNDNQLLVWNQH--SQQPTLR---L 330 (475)
Q Consensus 261 -~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s--~~~~~lasg~~Dg~I~iwd~~--~~~~~~~---~ 330 (475)
..+++.|.. |++|+|+++.. ...+.... +......++.+. ....+|..|-.||.+..+.+. ++..... +
T Consensus 570 ~s~~~aVg~~~d~tv~I~sL~~-l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~ 648 (1158)
T 3ei3_A 570 LSPLCAIGLWTDISARILKLPS-FELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVT 648 (1158)
T ss_dssp CCSEEEEEETTTTEEEEEETTT-CCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEE
T ss_pred cccEEEEEECCCCEEEEEECCC-CCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEE
Confidence 368999996 99999999973 33332211 111233344332 234578899999988666554 4443221 2
Q ss_pred eccccceeEEEECCCC-CcEEEEecCCCCCeEEEEECCCCcee-eeecCCCCeeEEEEcCC--CCeEEEEEecCCCeEEE
Q 011916 331 TEHTAAVKAIAWSPHQ-SSLLASGGGTADRCIRFWNTSNGHQL-NSVDTGSQVCNLAWSKN--VNELVSTHGYSQNQIMV 406 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~-~~ll~sg~Gs~d~~I~iwd~~~~~~~-~~~~~~~~v~~l~~s~~--~~~l~~~~g~~dg~I~i 406 (475)
-+ ..++.-..+...+ ..+++++ ++...+|... ++.. ..+....-.....|+.. ..-++.+ .++.++|
T Consensus 649 LG-~~pv~L~~~~~~~~~~V~a~s----~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~---~~~~LrI 719 (1158)
T 3ei3_A 649 LG-TQPTVLRTFRSLSTTNVFACS----DRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALA---NNSTLTI 719 (1158)
T ss_dssp CC-SSCCEEEEEESSSCEEEEEES----SSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEE---CSSCEEE
T ss_pred cC-CCceEEEEEeeCCceeEEEEC----CCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEE---cCCceEE
Confidence 22 2344433443333 3345543 4555555443 3322 22222222233445432 2334432 3556888
Q ss_pred EECCCCceE--EEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 407 WKYPSMAKV--STLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 407 wd~~~~~~~--~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
..+...+.. .++. -...+..++++|+.+.++.+..
T Consensus 720 ~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 720 GTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSS 756 (1158)
T ss_dssp EEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEE
T ss_pred EEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEE
Confidence 887654332 2232 3356889999998887666543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.83 Score=43.66 Aligned_cols=151 Identities=15% Similarity=0.059 Sum_probs=88.3
Q ss_pred ecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEE----eccccceeEEEECCC---CCcEEEEecCCCC
Q 011916 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT--LRL----TEHTAAVKAIAWSPH---QSSLLASGGGTAD 358 (475)
Q Consensus 288 ~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~--~~~----~~h~~~v~~l~~sp~---~~~ll~sg~Gs~d 358 (475)
+...-.....|+|.|||.++++--..|.|++++...++.. ..+ .........|+++|+ +..|+++-+...+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3333456789999999987777655899999987655432 111 123456789999996 4446554221245
Q ss_pred CeEEEEECCCC----------cee-eeec--CCCCeeEEEEcCCCCeEEEEEec------------CCCeEEEEECCCC-
Q 011916 359 RCIRFWNTSNG----------HQL-NSVD--TGSQVCNLAWSKNVNELVSTHGY------------SQNQIMVWKYPSM- 412 (475)
Q Consensus 359 ~~I~iwd~~~~----------~~~-~~~~--~~~~v~~l~~s~~~~~l~~~~g~------------~dg~I~iwd~~~~- 412 (475)
+.|.-|....+ +.+ ..+. .......|.|.|+|..++++ |. ..|.|.-++....
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~-Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGT-GESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEEC-BCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEE-CCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 66666765542 111 1122 22345679999999755553 42 1345555554321
Q ss_pred -------ceEEEecCCCcceEEEEECCCCCEEEEE
Q 011916 413 -------AKVSTLTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 413 -------~~~~~l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
....--.+|.. ...++|+|+|.+.++=
T Consensus 186 p~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 186 APGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp CTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEE
T ss_pred cCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEe
Confidence 11111224543 4679999998866653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.43 Score=50.46 Aligned_cols=194 Identities=12% Similarity=0.089 Sum_probs=102.9
Q ss_pred CCCCEEEEEeCC----CeEEEEECCCCeeeEEe--------cCCCCceEEEEe--CCCEEEEEeCCC------cEEEEEC
Q 011916 219 REGSYISVGTNL----GQVQVWDGTQCKRVRTF--------GGHQTRAGVLAW--NSRILSSGSRDR------NILQHDL 278 (475)
Q Consensus 219 pdg~~la~g~~d----g~v~iwd~~~~~~~~~~--------~~h~~~v~~l~~--~~~~l~sgs~dg------~I~iwd~ 278 (475)
-++..++.|+.+ ..+.+||..+.+-...- ......-..+.. ++.+++.|+.++ .+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777753 45888998776543322 111223345556 777888887543 5778888
Q ss_pred CCCCccEEE--ecCccCCEEEEEEcCCCCEEEEEeCCC--cEEEEECCCCceeEEEe-----ccccceeEEEECCCCCcE
Q 011916 279 RVSSDYICK--LAGHKSEVCGLKWSHDDRELASGGNDN--QLLVWNQHSQQPTLRLT-----EHTAAVKAIAWSPHQSSL 349 (475)
Q Consensus 279 ~~~~~~~~~--~~~h~~~V~~l~~s~~~~~lasg~~Dg--~I~iwd~~~~~~~~~~~-----~h~~~v~~l~~sp~~~~l 349 (475)
... ..... +...... .+++...++.+++.||.++ .+.+||..+..-...-. .......++.+..+...+
T Consensus 476 ~t~-~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 476 KTR-EWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp TTT-EEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred CCC-cEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 732 21111 1111111 2223324788888888654 79999998765322111 111222335555554557
Q ss_pred EEEecCCCC-----CeEEEEECCCCce-----eeee-c---CCCCeeEEEEcCCCCeEEEEEec-------CCCeEEEEE
Q 011916 350 LASGGGTAD-----RCIRFWNTSNGHQ-----LNSV-D---TGSQVCNLAWSKNVNELVSTHGY-------SQNQIMVWK 408 (475)
Q Consensus 350 l~sg~Gs~d-----~~I~iwd~~~~~~-----~~~~-~---~~~~v~~l~~s~~~~~l~~~~g~-------~dg~I~iwd 408 (475)
++.||...+ ..+.+||+.+..- ...+ . ....-..++...+++.++. .|. ....|.+||
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~-GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIV-GGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEE-CCBCSSCCCCTTTSEEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEE-CCccCCCCCCCCCeEEEEE
Confidence 777752222 5689999887761 1122 1 1111112222222444444 232 235699999
Q ss_pred CCCCceE
Q 011916 409 YPSMAKV 415 (475)
Q Consensus 409 ~~~~~~~ 415 (475)
..+.+..
T Consensus 633 ~~t~~W~ 639 (695)
T 2zwa_A 633 PLSETLT 639 (695)
T ss_dssp TTTTEEE
T ss_pred CCCCeEE
Confidence 9877654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.87 E-value=1.6 Score=43.35 Aligned_cols=159 Identities=14% Similarity=0.189 Sum_probs=90.7
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee--EEEec------cccceeEEEECCC---CCcEEEEecCC----
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT--LRLTE------HTAAVKAIAWSPH---QSSLLASGGGT---- 356 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~--~~~~~------h~~~v~~l~~sp~---~~~ll~sg~Gs---- 356 (475)
-....+|+|.|+|+++++-...+.|++++..+++.. ..+.. .......|+|+|+ +..|+++.+..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 345789999999987776554457888887655432 22221 2355679999996 66676664310
Q ss_pred --C----CCeEEEEECCCC--c-----eee-eec--CCCCeeEEEEcCCCCeEEEEEecC--------------------
Q 011916 357 --A----DRCIRFWNTSNG--H-----QLN-SVD--TGSQVCNLAWSKNVNELVSTHGYS-------------------- 400 (475)
Q Consensus 357 --~----d~~I~iwd~~~~--~-----~~~-~~~--~~~~v~~l~~s~~~~~l~~~~g~~-------------------- 400 (475)
. ...|.-|+...+ . .+. .+. .......|+|.|+|...+++ |..
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~-Gd~~~~~~~~~~~~~~~~~~p~~ 184 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTI-GDQGRNQLAYLFLPNQAQHTPTQ 184 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEE-CCTTTTSGGGTTSCCCTTCCCCH
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEE-CCCCCCCcccccccccccccccc
Confidence 0 235666655332 1 111 122 22457899999999766654 532
Q ss_pred -----------CCeEEEEECCCCc-----------eEEEe-cCCCcceEEEEECCCCCEEEEE-eCCCCEEEEecCC
Q 011916 401 -----------QNQIMVWKYPSMA-----------KVSTL-TGHSLRVLYLATSPDGQTIVTG-AGDETLRFWNVFP 453 (475)
Q Consensus 401 -----------dg~I~iwd~~~~~-----------~~~~l-~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iW~~~~ 453 (475)
.|.|.-++.. +. ....+ .+|. ....++|.++|.++++- +.++.-.|.-+..
T Consensus 185 ~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i~~ 259 (454)
T 1cru_A 185 QELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLIVK 259 (454)
T ss_dssp HHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCCS-EEEEEEECTTSCEEEEEECSSSCEEEEECCT
T ss_pred ccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECCC-CcceEEECCCCCEEEEecCCCCCeEEEEecC
Confidence 1344444432 22 11111 2443 36789999998866653 3454455555544
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.39 Score=42.58 Aligned_cols=147 Identities=14% Similarity=0.095 Sum_probs=89.2
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce------eEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEE
Q 011916 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP------TLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWN 365 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~------~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd 365 (475)
..+..++|+|+|.+.++ .+|.++-.+..+... -..+-. --....++.|.|+|. |+++ .||.|+-++
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~-LYav----~dG~iyr~~ 113 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGY-LYAV----SKDKLYKAS 113 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSC-EEEE----ETTEEEEES
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCC-EEEe----CCCEEEEeC
Confidence 36779999999987777 567777777654221 112211 111258899999998 5554 379998887
Q ss_pred CCCCceee------eecC-C-CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc------eEEEe-cCCCcceEEEEE
Q 011916 366 TSNGHQLN------SVDT-G-SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA------KVSTL-TGHSLRVLYLAT 430 (475)
Q Consensus 366 ~~~~~~~~------~~~~-~-~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~------~~~~l-~~h~~~V~~l~~ 430 (475)
-.+..... .+.. + ..+..|.+.|+|...++ . ++.++-...++.. ....+ ...-..-..+.|
T Consensus 114 pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav--~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f 189 (236)
T 1tl2_A 114 PPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAV--H--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFF 189 (236)
T ss_dssp CCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEE--E--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEE
T ss_pred CCcCCCCceeccccEeccCCCCceEEEEECCCceEEEE--e--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEE
Confidence 54322111 1111 1 35789999999998887 4 6776544444321 11111 233344566789
Q ss_pred CCCCCEEEEEeCCCCEEEEecCCC
Q 011916 431 SPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 431 spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.++|.+.+.. +| +||...+.
T Consensus 190 ~~~G~l~~v~--~g--~~Y~~~~p 209 (236)
T 1tl2_A 190 SSVGTLFGVQ--GG--KFYEDYPP 209 (236)
T ss_dssp CTTSCEEEEE--TT--EEEEESCC
T ss_pred CCCCcEEEEe--CC--eEEecCCc
Confidence 9999877766 66 66666544
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.36 Score=46.36 Aligned_cols=143 Identities=10% Similarity=0.125 Sum_probs=80.4
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee---EEE----eccccceeEEEECCC---CCcEEEEecCC-C----
Q 011916 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT---LRL----TEHTAAVKAIAWSPH---QSSLLASGGGT-A---- 357 (475)
Q Consensus 293 ~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~---~~~----~~h~~~v~~l~~sp~---~~~ll~sg~Gs-~---- 357 (475)
.....|+|.|+|+.|+++...|.|++++.. +... ..+ .........|+++|+ +..|+++.... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 457899999999834455567999999854 3211 111 112345689999996 56576663200 0
Q ss_pred CCeEEEEECCCC--c--eeee----ec----CCCCeeEEEEcCCCCeEEEEEecC------------CCeEEEEECCCC-
Q 011916 358 DRCIRFWNTSNG--H--QLNS----VD----TGSQVCNLAWSKNVNELVSTHGYS------------QNQIMVWKYPSM- 412 (475)
Q Consensus 358 d~~I~iwd~~~~--~--~~~~----~~----~~~~v~~l~~s~~~~~l~~~~g~~------------dg~I~iwd~~~~- 412 (475)
...|..|++..+ . .... +. .......|+|.|+|. |+++.|.. .|.|.-++....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666766533 1 1111 11 112356799999995 44443432 246777765421
Q ss_pred -------------ceEEEecCCCcceEEEEECC-CCCEEEE
Q 011916 413 -------------AKVSTLTGHSLRVLYLATSP-DGQTIVT 439 (475)
Q Consensus 413 -------------~~~~~l~~h~~~V~~l~~sp-dg~~l~s 439 (475)
..+. -.+|. ....++|.| +|.++++
T Consensus 176 p~~npf~~~~~~~~~i~-a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIW-SYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTCTTTTSTTSCTTEE-EECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCCCcCCCCCCccEE-EEcCc-CccceEEECCCCCEEEE
Confidence 1111 12333 367899999 6655554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.66 Score=52.23 Aligned_cols=194 Identities=8% Similarity=0.118 Sum_probs=117.9
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCC-cEEEEeeCC---CCCcEEEEEEcCCCCEEEEEe-------CCCeEEEEECC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNS-KVTRLCDLG---PGDSVCSVQWTREGSYISVGT-------NLGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~-~~~~~~~~~---~~~~V~~v~~spdg~~la~g~-------~dg~v~iwd~~ 239 (475)
|.--.|-..+.++.-.+..|+-|++.+. ...+.++.. .+..|..-.-+++.++++..+ -.|.+++|.++
T Consensus 108 VvfWkWis~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 108 VTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred ceEEEecCCCeeEEEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 4447888888888888999999999753 333444321 145677777888999877543 24889999976
Q ss_pred CCeeeEEecCCCCceEEEEeCC-----CEEEEEeC---CCcEEEEECCCC--Ccc------EEEec---CccCCEEEEEE
Q 011916 240 QCKRVRTFGGHQTRAGVLAWNS-----RILSSGSR---DRNILQHDLRVS--SDY------ICKLA---GHKSEVCGLKW 300 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~~~-----~~l~sgs~---dg~I~iwd~~~~--~~~------~~~~~---~h~~~V~~l~~ 300 (475)
.+ ..+.+.||.+....+..+| .+++.+.+ .+.++|.++... +.. +..+. .-.....++..
T Consensus 188 r~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~v 266 (1630)
T 1xi4_A 188 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 266 (1630)
T ss_pred cc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEe
Confidence 53 3345667766555555532 23333322 268888888532 111 00111 11233456777
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
++.-..+..-+.-|.|++||+.++.++..-+-....|...+-......+++.. ..|.|.-..+..
T Consensus 267 s~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vn---r~G~vl~v~v~~ 331 (1630)
T 1xi4_A 267 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN---RKGQVLSVCVEE 331 (1630)
T ss_pred ccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEc---CCceEEEEEEcc
Confidence 77777788888889999999999988775544444444444443333344432 355544444433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.49 Score=41.96 Aligned_cols=132 Identities=12% Similarity=0.044 Sum_probs=79.3
Q ss_pred CCEEEEEeCCCcEEEEECCCCc------eeEEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec
Q 011916 304 DRELASGGNDNQLLVWNQHSQQ------PTLRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD 376 (475)
Q Consensus 304 ~~~lasg~~Dg~I~iwd~~~~~------~~~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~ 376 (475)
..+|++..+| +|+.=...... ...++-. .=..++.++|+|++. |+++ .++.++-.+..+.....-+.
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV----~~G~Ly~~~~~t~~~~~W~~ 77 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV----LNDKIYKGTPPTHDNDNWMG 77 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE----ETTEEEEESCCCSTTCCHHH
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE----eCCeEEEECCCCCCcccccc
Confidence 4466777777 66554444333 1222222 124678999999888 6665 36777777765533222111
Q ss_pred CCCC--------eeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce-------EEEecCCCcceEEEEECCCCCEEEEEe
Q 011916 377 TGSQ--------VCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK-------VSTLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 377 ~~~~--------v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~-------~~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
.... ...+.|.++|.+.++ .||.|+-++-++... ...-..--..+..|.+.|+|.+.+..
T Consensus 78 s~t~IG~~Gw~~F~a~~fD~~G~LYav----~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 78 RAKKIGNGGWNQFQFLFFDPNGYLYAV----SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp HCEEEECSCGGGCSEEEECTTSCEEEE----ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred cccEecccccccceEEEECCCCCEEEe----CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 1111 477889999988776 469998888654221 11111222467999999999876666
Q ss_pred CCCCEE
Q 011916 442 GDETLR 447 (475)
Q Consensus 442 ~Dg~I~ 447 (475)
|+.++
T Consensus 153 -dg~ly 157 (236)
T 1tl2_A 153 -GQQFY 157 (236)
T ss_dssp -TTEEE
T ss_pred -CCcEE
Confidence 77643
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=94.13 E-value=1.4 Score=40.66 Aligned_cols=225 Identities=12% Similarity=0.080 Sum_probs=115.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEec
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~ 289 (475)
..|..|+.... ..++. . ||.|..|-......+..-......|..++-.....+.-. ||.|..|-....++.-. -.
T Consensus 24 ~~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~-P~ 98 (282)
T 3qhy_B 24 SGVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTV-PA 98 (282)
T ss_dssp SSCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCC-CG
T ss_pred CCCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCC-Cc
Confidence 35666665432 23333 5 899999976543222111112336777777544333335 99999997654333211 11
Q ss_pred CccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC
Q 011916 290 GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG 369 (475)
Q Consensus 290 ~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~ 369 (475)
.-...|..++...+ ..+.-. ||.|+.|-....-.+-.-......|..|+...+.. ++. .|+.|+.|-....
T Consensus 99 ~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~-~~l-----~~G~v~~wG~n~~ 169 (282)
T 3qhy_B 99 EARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTA-LAV-----KNGGVIAWGDNYF 169 (282)
T ss_dssp GGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEE-EEE-----ETTEEEEEECCTT
T ss_pred ccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEE-EEE-----ECCEEEEecCCCC
Confidence 11346777776543 333334 89999997654221111111234566666544322 222 2688888875432
Q ss_pred ceee-eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEE
Q 011916 370 HQLN-SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF 448 (475)
Q Consensus 370 ~~~~-~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 448 (475)
-.+. .......|..++.-. ...++ - .+|.|+.|=.....++..-......|..++...+...++ . ||.|+.
T Consensus 170 gqlg~p~~~~~~v~~i~~G~--~hs~a--l-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h~~al-~--~g~v~~ 241 (282)
T 3qhy_B 170 GQTTVPAEAQSGVDDVAGGI--FHSLA--L-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWYSLAL-K--NGKVIA 241 (282)
T ss_dssp STTSCCGGGGSSEEEEEECS--SEEEE--E-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSCEEEE-E--TTEEEE
T ss_pred CCCCCceecCCCeEEEEecC--CEEEE--E-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCEEEEE-E--CCEEEE
Confidence 2111 111223455555432 23333 2 488899997654322211111223577777655443333 3 999999
Q ss_pred EecCCCCC
Q 011916 449 WNVFPSLK 456 (475)
Q Consensus 449 W~~~~~~~ 456 (475)
|--.....
T Consensus 242 wG~n~~gq 249 (282)
T 3qhy_B 242 WGSSRTAP 249 (282)
T ss_dssp ESTTCCCC
T ss_pred ecCCCCcc
Confidence 98765443
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.51 E-value=6.3 Score=36.17 Aligned_cols=238 Identities=16% Similarity=0.153 Sum_probs=122.6
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h 250 (475)
+..++-.....++.. ++.|+.|-....-...+- ......|..|+...+ ..++. . ||.|..|-......+..-..-
T Consensus 26 i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~~~ 100 (282)
T 3qhy_B 26 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPAEA 100 (282)
T ss_dssp CCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCGGG
T ss_pred CcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCccc
Confidence 334555556666666 999999986543211111 011235666665432 23444 4 899999976543222111111
Q ss_pred CCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 251 QTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 251 ~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
...|..++......+.-. ||.|..|-....++.-. .......|..++...+. .++ -. ||.|+.|-......+-.-
T Consensus 101 ~~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~-~~~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg~p 175 (282)
T 3qhy_B 101 RSGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTV-PAEAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTTVP 175 (282)
T ss_dssp SSSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSC-CGGGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTSCC
T ss_pred CCCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCC-CccCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCCCc
Confidence 346788887665555556 99999997654333211 11123457777664432 233 23 689999976542211111
Q ss_pred eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee-eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 331 TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN-SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~-~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
......|..|+.-.+.. ++. .|+.|+.|=....-.+. .......|..++... ...++ -. +|.|+.|=.
T Consensus 176 ~~~~~~v~~i~~G~~hs--~al----~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~--~h~~a--l~-~g~v~~wG~ 244 (282)
T 3qhy_B 176 AEAQSGVDDVAGGIFHS--LAL----KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGE--WYSLA--LK-NGKVIAWGS 244 (282)
T ss_dssp GGGGSSEEEEEECSSEE--EEE----ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECS--SCEEE--EE-TTEEEEEST
T ss_pred eecCCCeEEEEecCCEE--EEE----ECCeEEEEECCCCCCCCCCcccCCCceEEEcCC--CEEEE--EE-CCEEEEecC
Confidence 11234566676654432 332 27888888654322111 111223455555432 23333 22 888999876
Q ss_pred CCCceEEEecCCCcceEEEEECCC
Q 011916 410 PSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 410 ~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
....++.. ...|..++....
T Consensus 245 n~~gq~~v----~~~v~~iaaG~~ 264 (282)
T 3qhy_B 245 SRTAPSSV----QSGVSSIEAGPN 264 (282)
T ss_dssp TCCCCGGG----SSCEEEEEECSS
T ss_pred CCCccccC----CCCcEEEEECcC
Confidence 54332211 234555655444
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.13 E-value=14 Score=35.56 Aligned_cols=232 Identities=12% Similarity=0.114 Sum_probs=127.1
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCC-----------cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNS-----------KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~-----------~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+..++-.....++...++.|+.|-.... .....+..-....+..++.+....+.++-+.||.|..|-..
T Consensus 55 i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n 134 (389)
T 3kci_A 55 PVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEA 134 (389)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECC
T ss_pred eEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCC
Confidence 3345545567788889999999965421 11122221223456667777777778888889999999643
Q ss_pred CC-----------eeeEEecC-CCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCc----------cEEEecC-ccCCEE
Q 011916 240 QC-----------KRVRTFGG-HQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSD----------YICKLAG-HKSEVC 296 (475)
Q Consensus 240 ~~-----------~~~~~~~~-h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~----------~~~~~~~-h~~~V~ 296 (475)
.. .....+.. ....|..++-.....+.-..||.|..|-....++ ....+.. ....|.
T Consensus 135 ~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~ 214 (389)
T 3kci_A 135 EDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVV 214 (389)
T ss_dssp GGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEE
T ss_pred CCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEE
Confidence 21 11112222 2236778887777777788899999996532111 1111111 223577
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC-c---------ee-EEEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 297 GLKWSHDDRELASGGNDNQLLVWNQHSQ-Q---------PT-LRLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 297 ~l~~s~~~~~lasg~~Dg~I~iwd~~~~-~---------~~-~~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
.++........+.-..||.|+.|-.... + .. ..+.. ....|..|+.-.... ++.+ .++.|+.|
T Consensus 215 ~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs-~alt----~~G~v~~w 289 (389)
T 3kci_A 215 DIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFS-VALT----KSGAVYTW 289 (389)
T ss_dssp EEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETTEE-EEEE----TTSCEEEE
T ss_pred EEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCCEE-EEEe----CCCeEEEE
Confidence 7766443356666678899999965421 0 11 11111 122466666544332 3332 68999999
Q ss_pred ECCCCce-----------eeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 365 NTSNGHQ-----------LNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 365 d~~~~~~-----------~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
=....-. ...+. ....|..++.-. ...++ -..+|.|+.|=...
T Consensus 290 G~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~a--l~~~G~v~~wG~n~ 345 (389)
T 3kci_A 290 GKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVC--CTEDGEVYTWGDND 345 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEE--EETTCCEEEEECCT
T ss_pred eCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEE--ECCCCCEEEeeCCC
Confidence 6532110 11111 123455554432 23333 24788999997643
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=88.50 E-value=18 Score=34.63 Aligned_cols=259 Identities=8% Similarity=-0.005 Sum_probs=121.1
Q ss_pred CEEEEEcCCeEEEEECCC--CcEEEEeeCCCCCcEEEEEEcC-CCCEEEEEeCCC----eEEEEECCCCeeeEEec----
Q 011916 180 NVLAVGLGTCVYLWTASN--SKVTRLCDLGPGDSVCSVQWTR-EGSYISVGTNLG----QVQVWDGTQCKRVRTFG---- 248 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~--~~~~~~~~~~~~~~V~~v~~sp-dg~~la~g~~dg----~v~iwd~~~~~~~~~~~---- 248 (475)
.+++++..| +++++... ..............|.+|++.| +...|.+++..| .|...+ ..++.-..+.
T Consensus 24 ~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~ 101 (394)
T 3b7f_A 24 MLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPA 101 (394)
T ss_dssp EEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCC
T ss_pred EEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCcccc
Confidence 455555544 66666543 2333321112346799999998 344455555555 444432 2222222211
Q ss_pred --C--------CCCceEEEEeC----CCEEEEEeCCCcEEEEECCCCCccEEEecC-------------------ccCCE
Q 011916 249 --G--------HQTRAGVLAWN----SRILSSGSRDRNILQHDLRVSSDYICKLAG-------------------HKSEV 295 (475)
Q Consensus 249 --~--------h~~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~-------------------h~~~V 295 (475)
. ....|.+++++ +..|.++...+.|...+- .+.....+.. ....|
T Consensus 102 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D--gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i 179 (394)
T 3b7f_A 102 FNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTD--HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKM 179 (394)
T ss_dssp CCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESS--TTSBCEECHHHHTCTTHHHHHCCC----CCCCEE
T ss_pred CCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcC--CCCCeEECcCccCCccccccccccccCCCCCCce
Confidence 1 11257778874 567777766665554432 2222222211 12357
Q ss_pred EEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeEEEec-----c--------ccceeEEEECCCCCcEEEEecCCCCCeE
Q 011916 296 CGLKWSH-DDRELASGGNDNQLLVWNQHSQQPTLRLTE-----H--------TAAVKAIAWSPHQSSLLASGGGTADRCI 361 (475)
Q Consensus 296 ~~l~~s~-~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~-----h--------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I 361 (475)
.+|.+.| +...|..+..++.|+..+- .++.-..+.. + ...+.+|++.|.....+..+. .+.|
T Consensus 180 ~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~---~~gl 255 (394)
T 3b7f_A 180 HSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN---HCGI 255 (394)
T ss_dssp EEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE---TTEE
T ss_pred eEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc---CCeE
Confidence 8999987 3444555544444544332 2222111111 0 124789999987433333332 3445
Q ss_pred EEEECCCCceeeeecC--C----CCeeEEEEcCC-CCeEEEEEec---------CCCeEEEEECCC-CceEEEec-CCC-
Q 011916 362 RFWNTSNGHQLNSVDT--G----SQVCNLAWSKN-VNELVSTHGY---------SQNQIMVWKYPS-MAKVSTLT-GHS- 422 (475)
Q Consensus 362 ~iwd~~~~~~~~~~~~--~----~~v~~l~~s~~-~~~l~~~~g~---------~dg~I~iwd~~~-~~~~~~l~-~h~- 422 (475)
...+ ..++....+.. . ..+..+.++|. ...|++.+.. .++...+|.... ++.-..+. +-.
T Consensus 256 ~~s~-D~G~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~ 334 (394)
T 3b7f_A 256 YRMD-RREGVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPT 334 (394)
T ss_dssp EEEE-TTTTEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCC
T ss_pred EEeC-CCCCcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCC
Confidence 5443 23433333321 1 23567788763 3445552211 123345555443 22222221 111
Q ss_pred -c---c--eEEEEECCC-CCEEEEEeCCCCEE
Q 011916 423 -L---R--VLYLATSPD-GQTIVTGAGDETLR 447 (475)
Q Consensus 423 -~---~--V~~l~~spd-g~~l~s~s~Dg~I~ 447 (475)
. . ...++++|. ...|+.++.++.|.
T Consensus 335 ~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~ 366 (394)
T 3b7f_A 335 DQAWLTVKRQAMTADAHAPVGVYFGTTGGEIW 366 (394)
T ss_dssp SSCCCCCCTBSEEECCSSSCCEEEECTTSCEE
T ss_pred ccccceEEEEEEEECCCCCCEEEEEeCCCeEE
Confidence 0 1 135788874 34566666566544
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=88.39 E-value=27 Score=36.65 Aligned_cols=230 Identities=8% Similarity=0.062 Sum_probs=116.6
Q ss_pred EcCCCCEEEEEeCC-----CeEEEEECCCCeeeEE-ec-CCCC------ceEEEEe-CCCEEEEEe-----------CCC
Q 011916 217 WTREGSYISVGTNL-----GQVQVWDGTQCKRVRT-FG-GHQT------RAGVLAW-NSRILSSGS-----------RDR 271 (475)
Q Consensus 217 ~spdg~~la~g~~d-----g~v~iwd~~~~~~~~~-~~-~h~~------~v~~l~~-~~~~l~sgs-----------~dg 271 (475)
++|++++++++-+. ..|+++|+++++.+.. +. .-.. ....++| +.+.++.+. ...
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEITSSLYPN 216 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCBCTTSSBC
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCcCcCCCCC
Confidence 78888888775442 3699999999987741 22 0000 1134477 444444432 224
Q ss_pred cEEEEECCCCCc-cEEEecCccCC-EEEEEEcCCCC-----EEEEEeCC---CcEEEEECCC--CceeEEEeccccceeE
Q 011916 272 NILQHDLRVSSD-YICKLAGHKSE-VCGLKWSHDDR-----ELASGGND---NQLLVWNQHS--QQPTLRLTEHTAAVKA 339 (475)
Q Consensus 272 ~I~iwd~~~~~~-~~~~~~~h~~~-V~~l~~s~~~~-----~lasg~~D---g~I~iwd~~~--~~~~~~~~~h~~~v~~ 339 (475)
.|+.|.+-+... -...+.+.... -.+...+.+++ .+++.+.+ ..+++.|... ++ ...+..... ..
T Consensus 217 ~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~--~~ 293 (711)
T 4hvt_A 217 SLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQKINMPSD--AT 293 (711)
T ss_dssp EEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EEECCSCTT--CE
T ss_pred EEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ceEeecCCc--ce
Confidence 688887764422 22333332222 33455566666 24444322 4567777653 32 222222111 12
Q ss_pred EEECCCCCcEEEEec-------CCCCCeEEEEECCCCc-------eeee-ec--CCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 340 IAWSPHQSSLLASGG-------GTADRCIRFWNTSNGH-------QLNS-VD--TGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 340 l~~sp~~~~ll~sg~-------Gs~d~~I~iwd~~~~~-------~~~~-~~--~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
+..+.++..++.+.. +...+.|...|+.++. .... +. ....+..+.|..+ ..+++ ...++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~--~~~~~ 370 (711)
T 4hvt_A 294 LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA--TYDNV 370 (711)
T ss_dssp EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE--EEETT
T ss_pred EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE--EEECC
Confidence 234445543332211 0135678888887642 1222 32 3345777888866 34444 33444
Q ss_pred --eEEEEECCCCc-eEEE-ecCC-CcceEEEEECCCCC-EEEEEeC---CCCEEEEecC
Q 011916 403 --QIMVWKYPSMA-KVST-LTGH-SLRVLYLATSPDGQ-TIVTGAG---DETLRFWNVF 452 (475)
Q Consensus 403 --~I~iwd~~~~~-~~~~-l~~h-~~~V~~l~~spdg~-~l~s~s~---Dg~I~iW~~~ 452 (475)
.|.++++.+++ .+.. +.-. .+.+.....++++. ++++.+. -+.+..+|+.
T Consensus 371 ~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 371 VAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 57778776654 2222 2211 24566666667664 4444443 2456666665
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=85.33 E-value=27 Score=34.47 Aligned_cols=106 Identities=10% Similarity=0.069 Sum_probs=61.9
Q ss_pred cceeEEEECCCCC-cEEEEecCCCCCeEEEEECCCC---ceeeeec----C------CCCeeEEEEcCC---CCeEEEEE
Q 011916 335 AAVKAIAWSPHQS-SLLASGGGTADRCIRFWNTSNG---HQLNSVD----T------GSQVCNLAWSKN---VNELVSTH 397 (475)
Q Consensus 335 ~~v~~l~~sp~~~-~ll~sg~Gs~d~~I~iwd~~~~---~~~~~~~----~------~~~v~~l~~s~~---~~~l~~~~ 397 (475)
.....|+|.|++. .++++- ..|.|++++.... ..+..+. . ......|+|+|+ ...|+++.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~e---r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~y 90 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILE---KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSY 90 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEE---TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEE
T ss_pred CCceEEEECCCCCeEEEEEe---CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEE
Confidence 4567999999996 466654 6899999975432 1222221 1 345788999996 34454432
Q ss_pred ec-CC----------CeEEEEECCC----------CceEEEec--CCCcceEEEEECCCCCEEEEEeCC
Q 011916 398 GY-SQ----------NQIMVWKYPS----------MAKVSTLT--GHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 398 g~-~d----------g~I~iwd~~~----------~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
.. .+ ..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..
T Consensus 91 t~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 91 TTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp EECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred eCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 22 11 2455566532 12333332 112235789999999877776553
|
| >2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.98 E-value=0.36 Score=26.12 Aligned_cols=11 Identities=36% Similarity=0.878 Sum_probs=9.1
Q ss_pred CCcccCCCCCc
Q 011916 48 SDRFIPCRSSS 58 (475)
Q Consensus 48 ~drfip~r~~~ 58 (475)
-++|||+|-+.
T Consensus 5 ~eKFiPsRPAP 15 (26)
T 2rqw_B 5 NGKFIPSRPAP 15 (26)
T ss_dssp CCSSCCSSCCC
T ss_pred ccccccCCCCC
Confidence 48999999864
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=83.60 E-value=27 Score=38.05 Aligned_cols=73 Identities=8% Similarity=-0.002 Sum_probs=46.3
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEecc-----ccceeEEEECCCC-CcEEEEecCCCCCeEEEEEC
Q 011916 294 EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEH-----TAAVKAIAWSPHQ-SSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 294 ~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h-----~~~v~~l~~sp~~-~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.+.++...++..++++-+.|+++++|++.+++++.+..-. ..........|.. ..+.+.-....++..++|.+
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~~~~~~~~~~~~~~~i~v~~s~~~~g~F~~~~~ 315 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQSFPYLTSDHTTNSFIALYYPDNSHGSFSIYKL 315 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSCCCCCEEECSSSTTEEEEEECCSSSCEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccccccccccCCCcccEEEEEEcCCCCcEEEEEEE
Confidence 4677788888889999999999999999999988765321 1111122223322 32333322335677777765
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.04 E-value=29 Score=32.09 Aligned_cols=229 Identities=9% Similarity=0.031 Sum_probs=119.8
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeE---------EecCCCCceEEEEe-CCCEEEEEeCCCcEEEEEC---CCCC---
Q 011916 219 REGSYISVGTNLGQVQVWDGTQCKRVR---------TFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDL---RVSS--- 282 (475)
Q Consensus 219 pdg~~la~g~~dg~v~iwd~~~~~~~~---------~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~---~~~~--- 282 (475)
|+..++++.+.+|.|+--.+...+..+ .++.+..-+..+.- ..+.|+..+..|.++-... ...+
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 345678888888988776655432211 11222222222222 3467777777887655543 2211
Q ss_pred --ccEE---EecCccCCEEEEEEc---CCCCEEEEEeCCCcEEEEECCC-------CceeEEEeccccceeEEEECCCCC
Q 011916 283 --DYIC---KLAGHKSEVCGLKWS---HDDRELASGGNDNQLLVWNQHS-------QQPTLRLTEHTAAVKAIAWSPHQS 347 (475)
Q Consensus 283 --~~~~---~~~~h~~~V~~l~~s---~~~~~lasg~~Dg~I~iwd~~~-------~~~~~~~~~h~~~v~~l~~sp~~~ 347 (475)
..+. .+. ....|.++..- .++.+++..+..|.++...+.. +.....+..+ +.+..+.......
T Consensus 81 ~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~ 158 (307)
T 1zi0_A 81 RGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGED 158 (307)
T ss_dssp CCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTC
T ss_pred CCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCC
Confidence 1110 122 23456655432 3556888999999999987642 1122223334 4444444433333
Q ss_pred cEEEEecCCCCCeEEEEECCC---------CceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC------
Q 011916 348 SLLASGGGTADRCIRFWNTSN---------GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM------ 412 (475)
Q Consensus 348 ~ll~sg~Gs~d~~I~iwd~~~---------~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~------ 412 (475)
.+++.. .+|.+..++... |.....+..+..|..+....++..+++ .+..|.++-.++...
T Consensus 159 ~i~l~T---~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~--~T~~G~~Kr~~~~e~~~~~Rg 233 (307)
T 1zi0_A 159 EVMLFS---AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILT--ATQNGYGKRTAVAEYPTKSRA 233 (307)
T ss_dssp EEEEEE---TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEE--EETTSEEEEECGGGSCCCCTT
T ss_pred EEEEEC---CCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEE--EEcCCceEEEEHHHhccCCCC
Confidence 354433 678877777532 222223345566777765555566666 557888887766221
Q ss_pred ---ceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 413 ---AKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 413 ---~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
.....+....+.+..+....+...|+..+.+|.+.-..+..-
T Consensus 234 ~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i 278 (307)
T 1zi0_A 234 TKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEI 278 (307)
T ss_dssp SCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGS
T ss_pred CCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccc
Confidence 111222223355555544344455667778888777777654
|
| >3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=80.45 E-value=43 Score=32.30 Aligned_cols=261 Identities=11% Similarity=0.013 Sum_probs=132.0
Q ss_pred CCEEEEEcCCeEEEEECCC-C---------cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-----
Q 011916 179 QNVLAVGLGTCVYLWTASN-S---------KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR----- 243 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~-~---------~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~----- 243 (475)
...++...++.|+.|-... + ....-..+..-..|..|+. .+.+.++-..||.|..|-....-.
T Consensus 34 ~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~ 111 (423)
T 3mvd_K 34 ELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDT 111 (423)
T ss_dssp CCCCCCCCCEEEEEEEECTTSTTCSCSSCCEEEEEEECCSCSSEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCC
T ss_pred ccceeecCCCcEEEEeCCCCCCCCCCCCCccCcCCeEccCCCCceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCC
Confidence 3344445677777774322 0 1111111222345655544 456777778899999996532111
Q ss_pred -------eEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEEC--CCCCcc---------EEEecCccCCEEEEEEcCCCC
Q 011916 244 -------VRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDL--RVSSDY---------ICKLAGHKSEVCGLKWSHDDR 305 (475)
Q Consensus 244 -------~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~--~~~~~~---------~~~~~~h~~~V~~l~~s~~~~ 305 (475)
....-.....|..++......+.-..||.|..|-. ...++. ..........|..|+.. ..
T Consensus 112 ~~~~~~~~P~~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~ 189 (423)
T 3mvd_K 112 SEDGSESKPDLIDLPGKALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--AD 189 (423)
T ss_dssp CSTTSSSSCEECCCSSCEEEEEECSSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SS
T ss_pred cCCccccCCeEEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CC
Confidence 00111123467777777677777789999999975 222211 11111223456666653 33
Q ss_pred EEEEEeCCCcEEEEECCCC-----------------------ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 306 ELASGGNDNQLLVWNQHSQ-----------------------QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 306 ~lasg~~Dg~I~iwd~~~~-----------------------~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
+.+.-..||.|+.|=.... .+..........|..|+..... .++.- +.++.|+
T Consensus 190 hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~--~~~~~--~~~g~v~ 265 (423)
T 3mvd_K 190 HLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYC--TFMRE--SQTQVIW 265 (423)
T ss_dssp EEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEETTE--EEEEE--TTTCCEE
T ss_pred eEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECCcE--EEEEE--CCCCeEE
Confidence 5555677899999964321 1111111122345555544322 22221 2688888
Q ss_pred EEECCCCce-----------eeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC------------ceEEEe
Q 011916 363 FWNTSNGHQ-----------LNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM------------AKVSTL 418 (475)
Q Consensus 363 iwd~~~~~~-----------~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~------------~~~~~l 418 (475)
.|-....-. ..-.. ....|..++.-. ...++ -..+|.|+.|=.... .....+
T Consensus 266 ~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~G~--~ht~a--lt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v 341 (423)
T 3mvd_K 266 ATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAGGQ--HHTVI--LTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIV 341 (423)
T ss_dssp EEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEECS--SEEEE--EETTCCEEEEECCGGGTTCSSSCCSCEEEEEEC
T ss_pred EEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEccc--CeEEE--EeCCCcEEEEECCCCCCCCCCCccccccCceEe
Confidence 886432110 00000 123455444332 22233 236888999864321 112223
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCC
Q 011916 419 TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 419 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~ 453 (475)
..-...|..++.... ..+....||.|+.|-...
T Consensus 342 ~~l~~~v~~ia~G~~--hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 342 KKLTEKIVSVGCGEV--CSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp TTCCSCEEEEEEETT--EEEEEETTSCEEEEECCT
T ss_pred ccCCCCEEEEEcCCC--eEEEEcCCCCEEEECCCC
Confidence 333336777776543 344447899999997654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 475 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-27 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-18 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-14 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-27 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-12 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.002 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-20 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-13 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-05 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-15 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.004 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 8e-15 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-13 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-12 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 6e-12 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 9e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 9e-11 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-04 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-10 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 8e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 3e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-09 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 7e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 2e-05 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-05 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-08 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 2e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 3e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 7e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-08 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 8e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 7e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 4e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 9e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 9e-06 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 8e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 109 bits (272), Expect = 2e-27
Identities = 59/305 (19%), Positives = 105/305 (34%), Gaps = 65/305 (21%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW------- 259
G V V + S + + ++VWD RT GH +++
Sbjct: 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 74
Query: 260 -------------------------------------NSRILSSGSRDRNILQHDLRVSS 282
N + S SRD+ I +++ +
Sbjct: 75 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TG 133
Query: 283 DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAW 342
+ GH+ V ++ + D +AS ND + VW +++ L EH V+ I+W
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISW 193
Query: 343 SPHQSSLLASGG-----------------GTADRCIRFWNTSNGHQLNSVDT-GSQVCNL 384
+P S S G+ D+ I+ W+ S G L ++ + V +
Sbjct: 194 APESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 253
Query: 385 AWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE 444
+ ++S + VW Y + + TL H V L +VTG+ D+
Sbjct: 254 LFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311
Query: 445 TLRFW 449
T++ W
Sbjct: 312 TVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.3 bits (204), Expect = 2e-18
Identities = 40/267 (14%), Positives = 90/267 (33%), Gaps = 36/267 (13%)
Query: 130 SILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTC 189
++ GH + + + + + +
Sbjct: 54 TLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113
Query: 190 VYLWTASNSKVTRLCDL----------GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239
++ +AS K ++ ++ G + V V+ ++G+ I+ +N V+VW
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173
Query: 240 QCKRVRTFGGHQTRAGVLAW----------------------NSRILSSGSRDRNILQHD 277
+ H+ ++W L SGSRD+ I D
Sbjct: 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 233
Query: 278 LRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAV 337
+ + + L GH + V G+ + + + S +D L VW+ +++ L H V
Sbjct: 234 VS-TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFV 292
Query: 338 KAIAWSPHQSSLLASGGGTADRCIRFW 364
++ + + + +G D+ ++ W
Sbjct: 293 TSLDFHKT-APYVVTGS--VDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.9 bits (172), Expect = 4e-14
Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 4/165 (2%)
Query: 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346
L+GH+S V + + + S D + VW+ + L HT +V+ I++
Sbjct: 12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71
Query: 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMV 406
L + + F ++ D + N + +VS ++
Sbjct: 72 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVS--IMPNGDHIVSASRDKTIKMWE 129
Query: 407 WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+ + V T TGH V + + DG I + + D+T+R W V
Sbjct: 130 VQ--TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.3 bits (108), Expect = 4e-06
Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNL 384
L+ H + V + + P S++ S D I+ W+ G ++ +
Sbjct: 8 PEKYALSGHRSPVTRVIFHP-VFSVMVSAS--EDATIKVWDYETGDFERTLKGHTDSVQD 64
Query: 385 AWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDE 444
+ + + + I +W + + T+ GH V ++ P+G IV+ + D+
Sbjct: 65 ISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123
Query: 445 TLRFWNV 451
T++ W V
Sbjct: 124 TIKMWEV 130
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.2 bits (100), Expect = 4e-05
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 410 PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
P + L+GH V + P +V+ + D T++ W+
Sbjct: 5 PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDY 46
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 108 bits (270), Expect = 8e-27
Identities = 49/284 (17%), Positives = 89/284 (31%), Gaps = 11/284 (3%)
Query: 174 VDWSS-QNVLAVGL--GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYI----SV 226
+ W + +L G + + + +KV + V + + G+Y+
Sbjct: 61 MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP--LRSSWVMTCAYAPSGNYVACGGLD 118
Query: 227 GTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYIC 286
+ R GH + S +
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 178
Query: 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQ 346
GH +V L + D R SG D +W+ T H + + AI + P+
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNG 238
Query: 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMV 406
++ R + + + ++++SK+ L++ GY V
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA--GYDDFNCNV 296
Query: 407 WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
W + L GH RV L + DG + TG+ D L+ WN
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.1 bits (157), Expect = 4e-12
Identities = 30/204 (14%), Positives = 59/204 (28%), Gaps = 41/204 (20%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
L GH +++ + W D R L S D +L++W+ ++ + ++ V A++P +
Sbjct: 51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGN 110
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH---------- 397
+ G +++ G + + T
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWD 170
Query: 398 -------------------------------GYSQNQIMVWKYPSMAKVSTLTGHSLRVL 426
G +W T TGH +
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN 230
Query: 427 YLATSPDGQTIVTGAGDETLRFWN 450
+ P+G TG+ D T R ++
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFD 254
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.4 bits (155), Expect = 7e-12
Identities = 30/250 (12%), Positives = 78/250 (31%), Gaps = 8/250 (3%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSS 266
G + ++ W + + + G++ +WD +V + A+
Sbjct: 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112
Query: 267 GSRDRNILQHDLRVSSDYICKLAGHKSE----VCGLKWSHDDRELASGGNDNQLLVWNQH 322
+ + + + + DD ++ + D +W+
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE 172
Query: 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GSQV 381
+ Q T T HT V +++ +P ++ G D + W+ G + S +
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVS---GACDASAKLWDVREGMCRQTFTGHESDI 229
Query: 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441
+ + N N + + ++ + + + ++ S G+ ++ G
Sbjct: 230 NAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289
Query: 442 GDETLRFWNV 451
D W+
Sbjct: 290 DDFNCNVWDA 299
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.1 bits (92), Expect = 4e-04
Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 6/122 (4%)
Query: 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351
K+++ + + D L+ N+ + Q + TLR H A + A+ W S LL
Sbjct: 15 KNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLR--GHLAKIYAMHWGTD-SRLLV 71
Query: 352 SGGGTADRCIRFWNTSNGHQLNSVDTGSQ-VCNLAWSKNVNELVSTHGYSQNQIMVWKYP 410
S D + W++ ++++++ S V A++ + N + + I K
Sbjct: 72 SAS--QDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTR 129
Query: 411 SM 412
Sbjct: 130 EG 131
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.2 bits (87), Expect = 0.002
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 417 TLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452
TL GH ++ + D + +V+ + D L W+ +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSY 85
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 89.9 bits (221), Expect = 3e-20
Identities = 66/352 (18%), Positives = 123/352 (34%), Gaps = 55/352 (15%)
Query: 145 PPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTR- 202
P LPR++ HK LD S + V +S+ LA G ++ S+ +
Sbjct: 44 NPALPREIDVELHKSLDHTS-----VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR 98
Query: 203 ----------------LCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246
+ SV ++ +G +++ G +++WD K V
Sbjct: 99 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI 158
Query: 247 FGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR 305
GH+ L + S ++ + L+ D +
Sbjct: 159 LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK 218
Query: 306 ELASGGNDNQLLVWNQHSQQPTLRL-------TEHTAAVKAIAWSPHQSSLLASGGGTAD 358
+A+G D + VW+ + RL T H +V ++ ++ S+++ G+ D
Sbjct: 219 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS---GSLD 275
Query: 359 RCIRFWNTSNGHQLNSVDT-------------GSQVCNLAWSKNVNELVSTHGYSQNQIM 405
R ++ WN N + + T V ++A ++N ++S G ++
Sbjct: 276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVL 333
Query: 406 VWKYPSMAKVSTLTGHSLRVLYLAT------SPDGQTIVTGAGDETLRFWNV 451
W S + L GH V+ +A P+ TG+GD R W
Sbjct: 334 FWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 68.7 bits (166), Expect = 3e-13
Identities = 51/332 (15%), Positives = 106/332 (31%), Gaps = 55/332 (16%)
Query: 156 PHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSV 215
V DA Q + Y L + + + V L L VC V
Sbjct: 25 SQSVPDALKKQTNDYYILYNPALPREIDVEL----------------HKSLDHTSVVCCV 68
Query: 216 QWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGV------------------L 257
+++ +G Y++ G N QV+ + V +
Sbjct: 69 KFSNDGEYLATGCN-KTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSV 127
Query: 258 AWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317
++ + + L + + I + + + G+ ++ +
Sbjct: 128 CFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTV 187
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377
V +A SP +A+G DR +R W++ G + +D+
Sbjct: 188 RIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDS 245
Query: 378 GSQ--------VCNLAWSKNVNELVSTHG----------YSQNQIMVWKYPSMAKVSTLT 419
++ V ++ ++++ +VS + N+ S T
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 420 GHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
GH VL +AT+ + + I++G+ D + FW+
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDK 337
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 8/101 (7%)
Query: 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246
NS + +G D V SV T+ YI G+ V WD +
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345
Query: 247 FGGHQTRAGVLAW--------NSRILSSGSRDRNILQHDLR 279
GH+ +A + ++GS D +
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.8 bits (182), Expect = 3e-15
Identities = 56/314 (17%), Positives = 105/314 (33%), Gaps = 15/314 (4%)
Query: 146 PKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASN----SKV 200
P P P +L + V S+ + G CV +W S+ S V
Sbjct: 29 PPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPV 88
Query: 201 TRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW- 259
++L L + + S + +G + VG + +WD + A
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA 148
Query: 260 --NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317
+ + + + + GH + S+D +L +GG DN +
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVR 208
Query: 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT 377
W+ + + + T+ + ++ + P G + + + +
Sbjct: 209 SWDLREGRQLQQ-HDFTSQIFSLGYCPTGEW---LAVGMESSNVEVLHVNKPDKYQLHLH 264
Query: 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTI 437
S V +L ++ VS N + W+ P A + S VL S D + I
Sbjct: 265 ESCVLSLKFAYCGKWFVS--TGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYI 321
Query: 438 VTGAGDETLRFWNV 451
VTG+GD+ + V
Sbjct: 322 VTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 4e-06
Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 10/121 (8%)
Query: 298 LKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357
+ D + + L+ + H V A+ S + + +GG
Sbjct: 15 FHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNP-TRHVYTGG--- 70
Query: 358 DRCIRFWNTSNGH------QLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411
C++ W+ S+ QL+ ++ + + + + L+ S I P+
Sbjct: 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT 130
Query: 412 M 412
Sbjct: 131 P 131
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.004
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+ + ++ P A+ H V + S + + TG G ++ W++
Sbjct: 27 PFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTG-GKGCVKVWDI 79
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 73.3 bits (178), Expect = 8e-15
Identities = 41/249 (16%), Positives = 82/249 (32%), Gaps = 17/249 (6%)
Query: 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRD 270
+ + G+ ++VWD + + GH + ++ R + SG+ D
Sbjct: 97 TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYD 156
Query: 271 RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330
+ D + + L GH + V D + SG D + VW+ + L
Sbjct: 157 FMVKVWDPETET-CLHTLQGHTNRVY--SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL 213
Query: 331 TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNV 390
T H + + + +L SG AD ++ W+ G L ++ ++ +
Sbjct: 214 TGHQSLTSGMELKDN---ILVSG--NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF 268
Query: 391 NELVSTHGYSQNQIMVWKYPSMAKVSTLT-----GHSLRVLYLATSPDGQTIVTGAGDET 445
N+ + +W + + L G V + S G+ + T
Sbjct: 269 NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 328
Query: 446 ----LRFWN 450
L +
Sbjct: 329 EETKLLVLD 337
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.9 bits (164), Expect = 5e-13
Identities = 46/246 (18%), Positives = 85/246 (34%), Gaps = 13/246 (5%)
Query: 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQV 233
V + V G+ + + + + G +G + G V
Sbjct: 100 VRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV 159
Query: 234 QVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS 293
+VWD + T GH R L ++ + SGS D +I D+ + I L GH+S
Sbjct: 160 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTLTGHQS 218
Query: 294 EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASG 353
G D L SG D+ + +W+ + Q L A+ + + +
Sbjct: 219 LTSG--MELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276
Query: 354 GGTADRCIRFWNTSNGHQLNSVDT------GSQVCNLAWSKNVNELV--STHGYSQNQIM 405
D ++ W+ G + ++ T G V + S S +G + +++
Sbjct: 277 S--DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL 334
Query: 406 VWKYPS 411
V +
Sbjct: 335 VLDFDV 340
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 2e-10
Identities = 54/259 (20%), Positives = 94/259 (36%), Gaps = 15/259 (5%)
Query: 193 WTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT 252
W K ++ G D V + G+ I G++ ++VW K +RT GH
Sbjct: 1 WRRGELKSPKVLK-GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
Query: 253 RAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGN 312
I+ SGS DR + + + ++ + SG
Sbjct: 59 GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTL---YGHTSTVRCMHLHEKRVVSGSR 115
Query: 313 DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL 372
D L VW+ + Q L H AAV+ + + + A D ++ W+ L
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAY-----DFMVKVWDPETETCL 170
Query: 373 NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSP 432
+++ G + + +VS G I VW + + TLTGH +
Sbjct: 171 HTL-QGHTNRVYSLQFDGIHVVS--GSLDTSIRVWDVETGNCIHTLTGHQSLTSGM--EL 225
Query: 433 DGQTIVTGAGDETLRFWNV 451
+V+G D T++ W++
Sbjct: 226 KDNILVSGNADSTVKIWDI 244
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.7 bits (166), Expect = 1e-13
Identities = 49/286 (17%), Positives = 94/286 (32%), Gaps = 22/286 (7%)
Query: 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQV 233
+ + Q +++ + +W + + R+ G SV +Q+ + +V
Sbjct: 21 LQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQYDERVIITGSSDSTVRV 79
Query: 234 QVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS 293
+ + + S R + L GH++
Sbjct: 80 WDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 139
Query: 294 EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASG 353
V + + ASG D + VWN + + L H + + +
Sbjct: 140 AVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVV----- 192
Query: 354 GGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA 413
G++D IR W+ G L ++ ++ + +VS G +I VW +
Sbjct: 193 SGSSDNTIRLWDIECGACLRVLEGHEELVR-CIRFDNKRIVS--GAYDGKIKVWDLVAAL 249
Query: 414 K---------VSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+ TL HS RV L D IV+ + D+T+ W+
Sbjct: 250 DPRAPAGTLCLRTLVEHSGRVFRLQ--FDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 3e-07
Identities = 33/210 (15%), Positives = 63/210 (30%), Gaps = 10/210 (4%)
Query: 242 KRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS 301
+R+ L ++ + + SG RD I D + + L GH V L++
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKN-TLECKRILTGHTGSVLCLQYD 64
Query: 302 HDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCI 361
+T A + + + DR I
Sbjct: 65 ERV-------IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSI 117
Query: 362 RFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGH 421
W+ ++ + + ++ I VW + V TL GH
Sbjct: 118 AVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGH 177
Query: 422 SLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+ + +V+G+ D T+R W++
Sbjct: 178 KRGIAC--LQYRDRLVVSGSSDNTIRLWDI 205
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.6 bits (158), Expect = 3e-12
Identities = 28/263 (10%), Positives = 78/263 (29%), Gaps = 23/263 (8%)
Query: 210 DSVCSVQWTREGSYISVGTNLGQVQVWD--GTQCKRVRTFGGHQTRAGVLAW--NSRILS 265
+ + W ++ + I++ N +V +++ G + +V H + + W +S +
Sbjct: 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67
Query: 266 SGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS-GGNDNQLLVWNQHSQ 324
+ DRN L+ + + + + + + G + + +
Sbjct: 68 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLA-SGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN 383
+++ S G+ D R ++
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 384 LAWSKNVNELVSTHGY-----------------SQNQIMVWKYPSMAKVSTLTGHSLRVL 426
+ + + + E S+ G+ + + + V+TL +L +L
Sbjct: 188 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 247
Query: 427 YLATSPDGQTIVTGAGDETLRFW 449
+ + + G + F
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFT 270
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.3 bits (139), Expect = 7e-10
Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 6/125 (4%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL--RLTEHTAAVKAIAWSPHQSS 348
+ W+ D ++A N++++ ++ + + L EH V + W+P S+
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD-SN 64
Query: 349 LLASGGGTADRCIRFWNTSNGHQLNSVDTGSQV-CNLAWSKNVNELVSTHGYSQNQIMVW 407
+ + G DR W ++ NE G I +
Sbjct: 65 RIVTCG--TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC 122
Query: 408 KYPSM 412
+
Sbjct: 123 YFEQE 127
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 53.3 bits (126), Expect = 2e-08
Identities = 28/244 (11%), Positives = 68/244 (27%), Gaps = 10/244 (4%)
Query: 212 VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDR 271
+C + + + V +++ I R
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180
Query: 272 NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT 331
+ + + + V G+ +S + +A +D+ + + + + L
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240
Query: 332 EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVN 391
T + A+ + SSL+A+G D + + S V + + +
Sbjct: 241 SETLPLLAVTFITE-SSLVAAG---HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLT 296
Query: 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQT----IVTGAGDETLR 447
+ + A + + H V ++ G+ T D +
Sbjct: 297 ARERFQNLDKKASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354
Query: 448 FWNV 451
W+V
Sbjct: 355 IWDV 358
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.7 bits (114), Expect = 9e-07
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 381 VCNLAWSKNVNELVSTHGYSQNQIMVWKYPS--MAKVSTLTGHSLRVLYLATSPDGQTIV 438
+ AW+K+ ++ + +++ +++ +V L H+ +V + +PD IV
Sbjct: 10 ISCHAWNKDRTQIAI--CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV 67
Query: 439 TGAGDETLRFWN 450
T D W
Sbjct: 68 TCGTDRNAYVWT 79
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 18/144 (12%), Positives = 42/144 (29%), Gaps = 6/144 (4%)
Query: 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248
V L A + +V + E S ++ G + ++ +FG
Sbjct: 224 TVCLADADKKMAVATLA-SETLPLLAVTFITESSLVAAGHD-CFPVLFTYDSAAGKLSFG 281
Query: 249 GHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD---- 304
G + ++ + ++ + HK+ V +
Sbjct: 282 GRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKC 341
Query: 305 RELASGGNDNQLLVWNQHSQQPTL 328
+ + G D + +W+ S + L
Sbjct: 342 SQFCTTGMDGGMSIWDVRSLESAL 365
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 64.5 bits (155), Expect = 6e-12
Identities = 23/283 (8%), Positives = 68/283 (24%), Gaps = 22/283 (7%)
Query: 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK---- 242
G + ++ K + + V + + ++ + +
Sbjct: 65 GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124
Query: 243 ----RVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGL 298
+ F + H + I S
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184
Query: 299 KWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTAD 358
+ D + L + ++ + + + I SP+ + L+ +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244
Query: 359 RCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH----------GYSQNQIMVWK 408
+ +VD G + ++ + ++ +
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304
Query: 409 YPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
KV+ + + + L S D +T++ D + + +
Sbjct: 305 -VKTRKVTEVKNN---LTDLRLSADRKTVMVRKDDGKIYTFPL 343
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.2 bits (105), Expect = 9e-06
Identities = 23/245 (9%), Positives = 64/245 (26%), Gaps = 13/245 (5%)
Query: 221 GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRV 280
G I+ + GQ + D + ++ + R ++++
Sbjct: 15 GDLIAFVSR-GQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY 73
Query: 281 SSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAI 340
+ K + V + + + + +++ + + +PT+ A +
Sbjct: 74 RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDF 133
Query: 341 AWSPHQSSLLASGGG-------TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNEL 393
S + + + I ++ + S A+ + L
Sbjct: 134 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNL 193
Query: 394 VSTHGYS-----QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF 448
S ++ + + ++K + P T G D +
Sbjct: 194 YYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMY 253
Query: 449 WNVFP 453
P
Sbjct: 254 KRSSP 258
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.1 bits (146), Expect = 9e-11
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 4/151 (2%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQS 347
L GH + V +D + +G +D + V++ +++ L+L+ H V A+ ++
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH--G 64
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW 407
+L SG + + + C + + G N + VW
Sbjct: 65 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYI-VTGSRDNTLHVW 123
Query: 408 KYPSMAKVSTLTGHSLRVLYLATSPDGQTIV 438
K P + V L T + V
Sbjct: 124 KLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.6 bits (124), Expect = 4e-08
Identities = 29/208 (13%), Positives = 58/208 (27%), Gaps = 3/208 (1%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRIL 264
G SV + E +Y+ G + ++V+D K + GH L + ++
Sbjct: 10 GHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILV 68
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQ 324
S + + + ++ + + + + + +G DN L VW +
Sbjct: 69 SGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKE 128
Query: 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNL 384
E + G N S D V ++
Sbjct: 129 SSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV 188
Query: 385 AWSKNVNELVSTHGYSQNQIMVWKYPSM 412
A K + L + I +
Sbjct: 189 AQMKCLYILSGHTDRIYSTIYDHERKRC 216
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.2 bits (97), Expect = 1e-04
Identities = 9/78 (11%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 291 HKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLR-LTEHTAAVKAIAWSPHQSSL 349
H + + + + + G++NQ ++N S + + + + ++ + +L
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKG--KTL 337
Query: 350 LASGGGTADRCIRFWNTS 367
+A+ + + S
Sbjct: 338 VAAVEKDGQSFLEILDFS 355
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 4e-04
Identities = 40/301 (13%), Positives = 86/301 (28%), Gaps = 32/301 (10%)
Query: 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQV 233
+ + V+ + ++ + N K G V ++++ G +S T+
Sbjct: 19 LQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGGILVSGSTDRTVR 77
Query: 234 QVWDGTQCKRVRTFGGHQTRAGVLAWNS---RILSSGSRDRNILQHDLRVSSDYICKLAG 290
C G + T + + + +GSRD + L S
Sbjct: 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 137
Query: 291 HKSEVCGLKWSHDDRELAS--------------------GGNDNQLLVWNQHSQQPTLRL 330
H + + + G DN L+VW+ + L
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL 197
Query: 331 TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNV 390
+ HT + + + + + D IR W+ NG + ++ + + L +
Sbjct: 198 SGHTDRIYSTIYDHERKRC---ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK 254
Query: 391 NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
+ + S Y H + + T I+ + +N
Sbjct: 255 FLVSAAADGSIRGWDANDYSRKFSY-----HHTNLSAITTFYVSDNILVSGSENQFNIYN 309
Query: 451 V 451
+
Sbjct: 310 L 310
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 6e-04
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 6/123 (4%)
Query: 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GSQVCNLAWSK 388
L H +V + + +G D+ IR +++ N L + V L ++
Sbjct: 8 LRGHMTSVIT-CLQFE-DNYVITGA--DDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH 63
Query: 389 NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF 448
LVS ++ K V ++R L + + + IVTG+ D TL
Sbjct: 64 G-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV 122
Query: 449 WNV 451
W +
Sbjct: 123 WKL 125
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.001
Identities = 29/246 (11%), Positives = 78/246 (31%), Gaps = 10/246 (4%)
Query: 167 DDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTRE-GSYIS 225
D L++ ++ + Y + + SV+ G+ +
Sbjct: 116 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 175
Query: 226 VGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYI 285
G+ + VWD Q K + GH R ++ S + + + +
Sbjct: 176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 235
Query: 286 CKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH 345
+ + GL D +++ + + + + + + H + AI
Sbjct: 236 MYTLQGHTALVGLLRLSDKFLVSAAADGSI---RGWDANDYSRKFSYHHTNLSAITTFYV 292
Query: 346 QSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG--SQVCNLAWSKNVNELVSTHGYSQNQ 403
++L SG + +N +G +++ Q+ ++ + + + Q+
Sbjct: 293 SDNILVSGS---ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348
Query: 404 IMVWKY 409
+ + +
Sbjct: 349 LEILDF 354
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.0 bits (86), Expect = 0.002
Identities = 46/302 (15%), Positives = 90/302 (29%), Gaps = 36/302 (11%)
Query: 174 VDWSSQNVLAVG--LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG 231
+ ++ +L G T + + YI G+
Sbjct: 59 LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 232 QVQVWDGTQCKRVRTFGG-----------------------HQTRAGVLAWNSRILSSGS 268
+ VW + V G H ++ + I+ SGS
Sbjct: 119 TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGS 178
Query: 269 RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL 328
D ++ D+ L+GH + + H+ + S D + +W+ + +
Sbjct: 179 YDNTLIVWDVAQMKCL-YILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237
Query: 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSK 388
L HTA V + S AD IR W+ ++ + S + +
Sbjct: 238 TLQGHTALVGLLRLSDKFLV-----SAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYV 292
Query: 389 NVNELVSTHGYSQNQIMVWKYPSMAKV-STLTGHSLRVLYLATSPDGQTIVTGAGDETLR 447
+ N LVS S+NQ ++ S V + + + ++ + + D
Sbjct: 293 SDNILVSG---SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL-VAAVEKDGQSF 348
Query: 448 FW 449
Sbjct: 349 LE 350
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 59.0 bits (141), Expect = 3e-10
Identities = 31/299 (10%), Positives = 70/299 (23%), Gaps = 40/299 (13%)
Query: 190 VYLWTASNSKVTRLCDLGP-GDSVCSVQWTREGSYISV-GTNLGQVQVWDGTQCKRVRTF 247
+ + V ++ + G + G + D + +
Sbjct: 13 LVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72
Query: 248 GGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKS-------------- 293
V + LS + I + +R+ + +
Sbjct: 73 DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132
Query: 294 ---EVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLL 350
++ L W+ D +L G D ++ + + A A +
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192
Query: 351 ASGG------------------GTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNE 392
S G + + G V + + VN
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTA--VNP 250
Query: 393 LVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+ + N + + A + + + S DG T+ G L ++
Sbjct: 251 AKTRAFGAYNVLESFDLEKNASIKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 18/161 (11%), Positives = 41/161 (25%), Gaps = 19/161 (11%)
Query: 307 LASGGNDNQLLVWNQHSQQP--TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364
+ + ++L+V + + + + +P A+ +
Sbjct: 4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNK--SESLVKI 61
Query: 365 NTSNGHQLNSVDTGSQVCN---------------LAWSKNVNELVSTHGYSQNQIMVWKY 409
+ G L +D + LA ++ L TH Q +
Sbjct: 62 DLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYD 121
Query: 410 PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
++ LA + DG + D +
Sbjct: 122 AETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 46.7 bits (109), Expect = 3e-06
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 3/133 (2%)
Query: 212 VCSVQWTREGSYISVGTNLGQVQVWDG-TQCKRVRTFGGHQTRAGVLAWNSRILSSGSRD 270
++ + D T +R A N +
Sbjct: 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY 259
Query: 271 RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330
+ DL + K + S D + GG L ++ + + ++
Sbjct: 260 NVLESFDLE--KNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317
Query: 331 TEHTAAVKAIAWS 343
A ++A
Sbjct: 318 DLPGNASMSLASV 330
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (88), Expect = 0.001
Identities = 13/128 (10%), Positives = 36/128 (28%), Gaps = 2/128 (1%)
Query: 120 SSGPNSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQ 179
+P + ++ + + ++ D + +
Sbjct: 192 HESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPA 251
Query: 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239
A G + + + + + S SV + +GS + +G LG + +D
Sbjct: 252 KTRAFGAYNVLESFDLEKNASIKR--VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE 309
Query: 240 QCKRVRTF 247
++
Sbjct: 310 TLEKKGQV 317
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.7 bits (140), Expect = 5e-10
Identities = 30/272 (11%), Positives = 75/272 (27%), Gaps = 27/272 (9%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWD---GTQCKRVRTFGGHQTRAGVLAWN--- 260
P D + ++ S + + + G + V+ + + ++ +
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68
Query: 261 SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320
+ G+ IL+ DL S + + + D +L + D + V +
Sbjct: 69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVID 128
Query: 321 QHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG---GTADRCIRFWNTSNGHQLNSVDT 377
+ + ++ + + + S G + ++++ N
Sbjct: 129 PRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE 188
Query: 378 GSQVCNLAWSKNVN------------------ELVSTHGYSQNQIMVWKYPSMAKVSTLT 419
S + + E G N + + T
Sbjct: 189 ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248
Query: 420 GHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
+ V + SP + + T D + WN+
Sbjct: 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL 280
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 8e-06
Identities = 18/117 (15%), Positives = 38/117 (32%), Gaps = 9/117 (7%)
Query: 309 SGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368
G + N + + L+ T V +I +SP L +G D I WN
Sbjct: 226 QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS---DGIISCWNLQT 282
Query: 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV 425
++ + ++ + + + N L + A T+ ++ +
Sbjct: 283 RKKIKNFAKFNEDSVVKIACSDNILCLATSD--DTFKTNA----AIDQTIELNASSI 333
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 12/95 (12%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 213 CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF-GGHQTRAGVLAWNSRILSSGSRDR 271
S++++ ++ + G + W+ K+++ F ++ +A + IL + D
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDD 314
Query: 272 NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306
+ ++ + + S + + D E
Sbjct: 315 TF-----KTNAAIDQTIELNASSI----YIIFDYE 340
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 2e-04
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 412 MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
M V + + P ++ + D +L +
Sbjct: 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKF 40
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.8 bits (83), Expect = 0.004
Identities = 12/105 (11%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 264 LSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHS 323
D N + K V +++S + L + G+D + WN +
Sbjct: 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282
Query: 324 QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368
++ ++ + + ++L D + +
Sbjct: 283 RKK-IKNFAKFNEDSVVKIACS-DNILCLATS--DDTFKTNAAID 323
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 56.3 bits (134), Expect = 3e-09
Identities = 22/303 (7%), Positives = 54/303 (17%), Gaps = 43/303 (14%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV-GTNLGQVQVWDGTQCKRVRTFG 248
+++ ++ V + C + + + V + G + D CK
Sbjct: 20 LHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 79
Query: 249 GHQTRAGVLAW--------NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSE---VCG 297
V + + + + L V + +
Sbjct: 80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR 139
Query: 298 LKWSHDDRELASGGNDNQLLVWNQH------SQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351
L +D L V + +P
Sbjct: 140 TFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 199
Query: 352 S-----------------------GGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSK 388
+ G +
Sbjct: 200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 259
Query: 389 NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF 448
+ + + N++ + + +A G + G L
Sbjct: 260 SPKDPNQIY-GVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAV 317
Query: 449 WNV 451
+N
Sbjct: 318 FNP 320
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 49.4 bits (116), Expect = 4e-07
Identities = 28/254 (11%), Positives = 55/254 (21%), Gaps = 35/254 (13%)
Query: 215 VQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF-GGHQTRAGVLAWN---SRILSSGSRD 270
Y+ V + V D ++ + G +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 271 RNILQHDLRVSSDYIC-----KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQ 325
+I DL + + S D +E+ + N Q L + +
Sbjct: 62 GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121
Query: 326 PTLRL----TEHTAAVKAIAWSPHQSSLLASGGG----TADRCIRFWNTSNGHQLNSVDT 377
P L + A P Q L+ + A I + G ++
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181
Query: 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTI 437
+ + +V M++ D Q
Sbjct: 182 RNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIAR------------------FKDDKQDP 223
Query: 438 VTGAGDETLRFWNV 451
T ++
Sbjct: 224 ATADLLYGYLSVDL 237
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.5 bits (106), Expect = 7e-06
Identities = 22/169 (13%), Positives = 40/169 (23%), Gaps = 12/169 (7%)
Query: 297 GLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-EHTAAVKAIAWSPHQSSLLASGGG 355
G + N L V + S +P +
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60
Query: 356 TADRCIRFWNTSNG-------HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMV-- 406
I + + G + + A S + E+ +T +Q
Sbjct: 61 --YGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118
Query: 407 WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455
K P + ST G + + P ++ A D +L
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYK 167
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.1 bits (92), Expect = 4e-04
Identities = 14/146 (9%), Positives = 40/146 (27%), Gaps = 2/146 (1%)
Query: 102 QGSPMSPSKNMLRFKTDHSSGPNSPYSPSILGHDNGFSSEASTPPKLPRKVPKTPHKVLD 161
+ +P + Y+ + D + A KT
Sbjct: 186 RKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQ 245
Query: 162 APSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREG 221
+ + Y + G+ + + K+ + + V + ++G
Sbjct: 246 EFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK--AANLDHTYYCVAFDKKG 303
Query: 222 SYISVGTNLGQVQVWDGTQCKRVRTF 247
+ +G + V++ ++V+
Sbjct: 304 DKLYLGGTFNDLAVFNPDTLEKVKNI 329
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.1 bits (128), Expect = 1e-08
Identities = 45/283 (15%), Positives = 83/283 (29%), Gaps = 15/283 (5%)
Query: 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239
+ + GT VY + T + + + G Y + G G V++WD T
Sbjct: 30 DKIQYCNGTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT 88
Query: 240 Q-----CKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSE 294
Q + F G + + RI + G L + L G
Sbjct: 89 QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA 148
Query: 295 VCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354
+ + + G+D+ + + SL AS G
Sbjct: 149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 208
Query: 355 GTADRCI------RFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408
G + L +V V L WS + ++ S + I +W
Sbjct: 209 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS--ASADKTIKIWN 266
Query: 409 YPSMAKVSTLTGHS-LRVLYLATSPDGQTIVTGAGDETLRFWN 450
++ T+ + + L Q +V+ + + + F N
Sbjct: 267 VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
Query: 377 TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQT 436
L + +++ +G + S+ T HS + TSP G
Sbjct: 16 ARGTAVVLGNTPAGDKIQYCNG---TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYY 72
Query: 437 IVTGAGDETLRFWN 450
+G +R W+
Sbjct: 73 CASGDVHGNVRIWD 86
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.0 bits (99), Expect = 4e-05
Identities = 35/249 (14%), Positives = 68/249 (27%), Gaps = 10/249 (4%)
Query: 212 VCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR 269
+ T G I V + H + V + +SG
Sbjct: 20 AVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78
Query: 270 DRNILQHDLRVSSDYICKLA-GHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTL 328
N+ D ++ + V + W + + +A+ G + T
Sbjct: 79 HGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS 138
Query: 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSK 388
A + S G+ D + + ++ ++ +
Sbjct: 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN 198
Query: 389 NVNELVSTHGYSQNQIMV------WKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442
L ++ G ++ HS V L SPDG I + +
Sbjct: 199 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 443 DETLRFWNV 451
D+T++ WNV
Sbjct: 259 DKTIKIWNV 267
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 53.8 bits (128), Expect = 2e-08
Identities = 19/300 (6%), Positives = 58/300 (19%), Gaps = 37/300 (12%)
Query: 170 YLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPG------DSVCSVQWTREGSY 223
L S V ++ +L V + +
Sbjct: 78 DFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC 137
Query: 224 ISVGTNL-GQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSS 282
+ + + + + GS ++ DL +
Sbjct: 138 LLFFLFGSSAAAGLSVPGASDDQLTKSA-SCFHIHPGAAATHYLGSCPASLAASDLAAAP 196
Query: 283 DYICK-----LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAV 337
+ ++ + + + + + +
Sbjct: 197 AAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGR 256
Query: 338 KAIAWSPHQSSLLA----------------SGGGTADRCIRFWNTSNGHQLNSVDTGSQV 381
KA + ++A A S G + G
Sbjct: 257 KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDS 316
Query: 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGA 441
+ +++ + + ++ + + L P+ ++ A
Sbjct: 317 DAIIAAQDGASDNYANSAGTEVLDIY--------DAASDQDQSSVELDKGPESLSVQNEA 368
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 53.7 bits (127), Expect = 2e-08
Identities = 31/264 (11%), Positives = 83/264 (31%), Gaps = 6/264 (2%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV-GTNLGQVQVWDGTQCKRVRTFG 248
+ + +++KVT +G + +G+ + V + V + D + T
Sbjct: 14 ISVIDVTSNKVTATIPVGSN--PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP 71
Query: 249 GHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELA 308
+ GV + + + +S+ + GL S D ++L
Sbjct: 72 AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLY 131
Query: 309 SGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368
N ++ + + + + K IA +P + + + + + T++
Sbjct: 132 VTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS 191
Query: 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYL 428
V+ + + + N + + + + + +
Sbjct: 192 VIDTVKVEAAPSGIAVNPEGTKAYVTNVD-KYFNTVSMIDTGTNKITARIPVGP-DPAGI 249
Query: 429 ATSPDGQTI-VTGAGDETLRFWNV 451
A +PDG+ + V + T+ +
Sbjct: 250 AVTPDGKKVYVALSFCNTVSVIDT 273
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.1 bits (125), Expect = 3e-08
Identities = 34/282 (12%), Positives = 76/282 (26%), Gaps = 6/282 (2%)
Query: 174 VDWS--SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG 231
+ S + + + + W S R+ + ++ T +G +V +
Sbjct: 18 LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH 77
Query: 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGH 291
V G ++ + L + + +
Sbjct: 78 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISY 137
Query: 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351
S L + + + + S + + +
Sbjct: 138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVAT 197
Query: 352 SGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVW--KY 409
N H + ++V ++WS + L + G N ++VW
Sbjct: 198 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT--GSLDNSVIVWNMNK 255
Query: 410 PSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
PS + H++ + + TIV+ D ++FWNV
Sbjct: 256 PSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.5 bits (121), Expect = 8e-08
Identities = 18/123 (14%), Positives = 34/123 (27%), Gaps = 1/123 (0%)
Query: 288 LAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE-HTAAVKAIAWSPHQ 346
GH + L S D + L S + + W+ + + H + I +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMV 406
S + + + + SQ LA S + + V+
Sbjct: 68 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSH 127
Query: 407 WKY 409
K
Sbjct: 128 GKL 130
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.0 bits (104), Expect = 1e-05
Identities = 35/249 (14%), Positives = 76/249 (30%), Gaps = 9/249 (3%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRA--GVLAWNSRIL 264
G ++ ++ + +G + G + WD + R F G+ + L
Sbjct: 10 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 69
Query: 265 SSGSRDRNILQHDLRVSS--DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322
+ S D ++ S S+ GL S D + + + +
Sbjct: 70 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 129
Query: 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVC 382
+ + +A S + + G + + S V
Sbjct: 130 LTEVP-----ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITS 184
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442
+ + + V +A ++ T H+ +V ++ SPD + TG+
Sbjct: 185 VAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244
Query: 443 DETLRFWNV 451
D ++ WN+
Sbjct: 245 DNSVIVWNM 253
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (97), Expect = 7e-05
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 417 TLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451
GH+ + L++S DG+T+ + + + W++
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.2 bits (89), Expect = 7e-04
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 259 WNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318
+ + SR + H ++V + WS D+ LA+G DN ++V
Sbjct: 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIV 250
Query: 319 WN--QHSQQPTLRLTEHT-AAVKAIAWSPHQSSLLASGGGTADRCIRFWNTS 367
WN + S P + H ++V ++ W + + S G D I+FWN
Sbjct: 251 WNMNKPSDHPIIIKGAHAMSSVNSVIWLN--ETTIVSAG--QDSNIKFWNVP 298
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 52.1 bits (123), Expect = 6e-08
Identities = 32/305 (10%), Positives = 73/305 (23%), Gaps = 47/305 (15%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV----------GTNLGQVQVWDGT 239
++ +V + D G + +GS+I+ G V+V+D
Sbjct: 30 QFVIDGEAGRVIGMIDGGFLPNP---VVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86
Query: 240 QCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLK 299
++ + S + +L + + K+ L
Sbjct: 87 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD 146
Query: 300 WSH--------DDRELASGGNDNQLLVWNQHSQQPTLRLTE-----HTAAVKAIAWSPHQ 346
D + + V P + TE + A+S
Sbjct: 147 VPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKA 206
Query: 347 SSLLASGGG-------TADRCIRFWNTSNGHQLNSVDTG-----------SQVCNLAWSK 388
L+ + +F G + + +
Sbjct: 207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL 266
Query: 389 NVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQT--IVTGAGDETL 446
H + ++V + +++ + + S D + GD+TL
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYALSTGDKTL 325
Query: 447 RFWNV 451
+
Sbjct: 326 YIHDA 330
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 51.7 bits (122), Expect = 8e-08
Identities = 31/277 (11%), Positives = 67/277 (24%), Gaps = 33/277 (11%)
Query: 190 VYLWTASNSKVTRLCDLGP------GDSVCSVQWTREGSYISVGTNLGQVQ--VWDGTQC 241
V ++ T +L G T +G + V D
Sbjct: 80 VEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 139
Query: 242 KRVRTFGGHQTRAGVLAWNSRILSSGSRDRNIL-----QHDLRVSSDYICKLAGHKSEVC 296
R + RD ++ + + +
Sbjct: 140 AFKRMLDVP-DCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLIN 198
Query: 297 GLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE--HTAAVKAIAWSPHQSSLLASGG 354
+S L ++ + S T A +A W P +A
Sbjct: 199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 258
Query: 355 -----------------GTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTH 397
TA R + + G +L + G ++ ++ S++ L+
Sbjct: 259 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYAL 318
Query: 398 GYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG 434
+ + S ++ ++ + T+ G
Sbjct: 319 STGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.5 bits (121), Expect = 7e-08
Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 2/134 (1%)
Query: 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTF 247
L T +K + + + + + + + + W K
Sbjct: 153 VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAIS 212
Query: 248 GGH-QTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306
+ A ++++GS D NI + ++ I L HK V L W
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST- 271
Query: 307 LASGGNDNQLLVWN 320
L S G D + WN
Sbjct: 272 LVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.5 bits (108), Expect = 3e-06
Identities = 26/266 (9%), Positives = 61/266 (22%), Gaps = 9/266 (3%)
Query: 192 LWTASNSKVTRLCDLGPG-----DSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246
L + S + + S+ ++ Y S+ + +
Sbjct: 24 LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQP 83
Query: 247 FGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306
G A + V + + +
Sbjct: 84 KVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI 143
Query: 307 LASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366
+D ++ + + + + IA +L + + W
Sbjct: 144 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF 203
Query: 367 SNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK-VSTLTGHSLRV 425
++ + + + G I ++ K + L H V
Sbjct: 204 RTSKINAISWKPAEKGANEEEIEEDLVAT--GSLDTNIFIYSVKRPMKIIKALNAHKDGV 261
Query: 426 LYLATSPDGQTIVTGAGDETLRFWNV 451
L T+V+ D ++ WNV
Sbjct: 262 NNLLWETPS-TLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 3e-04
Identities = 16/129 (12%), Positives = 40/129 (31%), Gaps = 9/129 (6%)
Query: 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSP 344
+ ++GH + L + L SG D +++ W+ S +H+ + ++ S
Sbjct: 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----MHQDHSNLIVSLDNSK 56
Query: 345 HQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQI 404
Q S T + + + + + ++ + +
Sbjct: 57 AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKS 116
Query: 405 MVWKYPSMA 413
+ P A
Sbjct: 117 VRLNSPGSA 125
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (88), Expect = 0.001
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
Query: 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVC 382
+ ++ H + A+ +P L SG D I W++S+ HQ D + +
Sbjct: 2 HDEVLKTISGHNKGITALTVNP-----LISGS--YDGRIMEWSSSSMHQ----DHSNLIV 50
Query: 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSM 412
+L SK + + + K+
Sbjct: 51 SLDNSKAQEYSSISWDDTLKVNGITKHEFG 80
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.5 bits (116), Expect = 4e-07
Identities = 29/261 (11%), Positives = 67/261 (25%), Gaps = 21/261 (8%)
Query: 212 VCSVQWTREGSYISVGT-NLGQVQVWD--GTQCKRVRTFGGHQTRA-GVLAW----NSRI 263
+ + + I+ V+ D ++ V F GH + + + S+
Sbjct: 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY 79
Query: 264 LSSGSRDRNILQHDLRVSSDYIC-------KLAGHKSEVCGLKWSHDDRELASGGN--DN 314
L SG ++ + + + + W + R L G DN
Sbjct: 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN 139
Query: 315 QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374
+ + S ++ H+ + A + + G +
Sbjct: 140 FGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR 199
Query: 375 VDTGSQVCNLAWSKNVN----ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT 430
+ + + + + + ++ +
Sbjct: 200 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALS 259
Query: 431 SPDGQTIVTGAGDETLRFWNV 451
D Q T D T+R W+V
Sbjct: 260 WLDSQKFATVGADATIRVWDV 280
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 2e-05
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 300 WSHDDRELASGGNDNQLLVWNQHSQQP--TLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357
D ++ A+ G D + VW+ + + L + + + + + S
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS--L 316
Query: 358 DRCIRFWN 365
D + F+
Sbjct: 317 DGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.4 bits (100), Expect = 4e-05
Identities = 36/303 (11%), Positives = 82/303 (27%), Gaps = 25/303 (8%)
Query: 174 VDWSSQ-NVLAVGLGTCVYL--WTASNSKVTRLCDL--GPGDSVCSVQW--TREGSYISV 226
+ + N +A G ++ +SKV + V +V++ + Y+
Sbjct: 23 LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCS 82
Query: 227 GTNLGQVQVWDGTQCKRVRTFG--------GHQTRAGVLAWNS----RILSSGSRDRNIL 274
G G+V VW T K + ++W+ + RD +
Sbjct: 83 GDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGV 142
Query: 275 QHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL---VWNQHSQQPTLRLT 331
+ + + G+D ++
Sbjct: 143 FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH 202
Query: 332 EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVN 391
+ + V+ + +SP + + G + + D + ++
Sbjct: 203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 262
Query: 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATS---PDGQTIVTGAGDETLRF 448
+ I VW + V T ++ I++ + D TL F
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322
Query: 449 WNV 451
+ +
Sbjct: 323 YEL 325
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 6e-07
Identities = 38/346 (10%), Positives = 97/346 (28%), Gaps = 72/346 (20%)
Query: 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLG------------PGDSVCSVQWTREG 221
V + ++ + +W D + E
Sbjct: 20 VSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79
Query: 222 SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAG----------VLAWNS-------RIL 264
++ + G + + T+ + + L W + L
Sbjct: 80 CLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 139
Query: 265 SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS----------------HDDRELA 308
+ +D L + S L+ + + +A
Sbjct: 140 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIA 199
Query: 309 SGGNDNQLLVWNQHSQQPTLRL------TEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362
+G N+ + + + +P ++ +++++ +SP S L + + CI
Sbjct: 200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 259
Query: 363 FWNTSNGHQLNSVDTGSQ--------------VCNLAWSKNVNELVSTHGYSQNQIMVWK 408
+ T G ++ S+ + V +L+++ + L ++ W
Sbjct: 260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC--SAGWDGKLRFWD 317
Query: 409 YPSMAKVSTLTGHSLRVLY----LATSPDGQTIVTGAGDETLRFWN 450
+ +++TL H + LA G ++ G ++F
Sbjct: 318 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP-GVFDVKFLK 362
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 1e-06
Identities = 25/219 (11%), Positives = 55/219 (25%), Gaps = 26/219 (11%)
Query: 244 VRTFGGHQTRAGVLAWNSRILSSGSRDR-----NILQHDLRVSSDYICKLAGHKSEV--- 295
H ++ + S S D + D D HKS +
Sbjct: 7 ANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66
Query: 296 ----CGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351
+ + + +A+ LL + + T ++ + H L
Sbjct: 67 DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALK 126
Query: 352 SGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411
G + V + + + + ++ + ++
Sbjct: 127 WGASNDRLLSHRLVAT------DVKGTTYIWKFHPFADESNSLTLNWSPTLEL------- 173
Query: 412 MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450
V + S + S G I TG + T++
Sbjct: 174 QGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISE 211
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 9e-06
Identities = 43/328 (13%), Positives = 82/328 (25%), Gaps = 77/328 (23%)
Query: 190 VYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG----------- 238
V++ TA+ K + SV S+ + G ++VWD
Sbjct: 2 VFIATANAGK-------AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDK 52
Query: 239 TQCKRVRTFGGHQTRAGVLAWNS----RILSSGSRDRNILQHDLR---------VSSDYI 285
+ V G H ++++ S ++L + + +
Sbjct: 53 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL 112
Query: 286 CKLAGHKSEVCGLKWSHDD-----RELASGGNDNQLLVWNQHSQQPTLR----------- 329
K LKW + L + +W H
Sbjct: 113 LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 172
Query: 330 -------LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVC 382
+ ++ S L+A+G I +T
Sbjct: 173 LQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINN 230
Query: 383 N---LAWSKNVNELVSTHGYSQNQIMVWKY----------------PSMAKVSTLTGHSL 423
+ + + + + N S HS
Sbjct: 231 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS 290
Query: 424 RVLYLATSPDGQTIVTGAGDETLRFWNV 451
V+ L+ + G+T+ + D LRFW+V
Sbjct: 291 WVMSLSFNDSGETLCSAGWDGKLRFWDV 318
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.1 bits (102), Expect = 3e-05
Identities = 37/211 (17%), Positives = 67/211 (31%), Gaps = 33/211 (15%)
Query: 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT--------RAGVLA 258
P SV + G I+ G N G VQ+ + + + + F + R+ +
Sbjct: 182 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 240
Query: 259 WNSRILSSGSRDRNILQHDL---------------RVSSDYICKLAGHKSEVCGLKWSHD 303
+L+ + L SS H S V L ++
Sbjct: 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDS 300
Query: 304 DRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVK----AIAWSPHQSSLLASGGGTADR 359
L S G D +L W+ +++ L H ++ +A H SL G
Sbjct: 301 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKF 360
Query: 360 CIRFWNTSNGHQLNSVDTGSQVCNLAWSKNV 390
+ W + G D +C + +++
Sbjct: 361 LKKGWRSGMGA-----DLNESLCCVCLDRSI 386
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 47.6 bits (112), Expect = 2e-06
Identities = 41/338 (12%), Positives = 91/338 (26%), Gaps = 49/338 (14%)
Query: 173 LVDWSSQNVLAVGL---GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN 229
L D N+ +V L G + L + K+ + + G +V + + G Y+ V
Sbjct: 25 LNDLDLPNLFSVTLRDAGQ-IALVDGDSKKIVK--VIDTGYAVHISRMSASGRYLLVIGR 81
Query: 230 LGQVQVWD-----GTQCKRVRTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRV- 280
++ + D T+ ++ ++ ++ D
Sbjct: 82 DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141
Query: 281 ---------SSDYICKLAGHKSEVCGLKWSHDDREL--ASGGNDNQLLVWNQHSQQPTLR 329
+ + V + SH+ E LLV + T+
Sbjct: 142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT 201
Query: 330 LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT------------ 377
+ W + + + + L V
Sbjct: 202 SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVH 261
Query: 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTI 437
+ S + +S G + + KV+ L G L++ T P +
Sbjct: 262 PKYGPVWSTSHLGDGSISLIGTDPKNHPQYAW---KKVAELQGQGGGSLFIKTHPKSSHL 318
Query: 438 V-------TGAGDETLRFWNVFPSLKAPALVKDTSLWS 468
+++ +++ +L A V + W+
Sbjct: 319 YVDTTFNPDARISQSVAVFDL-KNLDAKYQVLPIAEWA 355
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 44.6 bits (104), Expect = 2e-05
Identities = 23/196 (11%), Positives = 48/196 (24%), Gaps = 19/196 (9%)
Query: 293 SEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-----EHTAAVKAIAWSPHQS 347
V + S R L G D ++ + + +++PT E + +
Sbjct: 62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDR 121
Query: 348 SLLASGGGTADRCIRFWNTSNGHQLN------------SVDTGSQVCNLAWSKNVNELVS 395
+A + + +V + S E +
Sbjct: 122 YTIAG--AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 179
Query: 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455
+ ++V T G + + + +T A +
Sbjct: 180 NVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR 239
Query: 456 KAPALVKDTSLWSLGR 471
+ ALV GR
Sbjct: 240 RLSALVDVGKTPHPGR 255
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (107), Expect = 9e-06
Identities = 38/322 (11%), Positives = 92/322 (28%), Gaps = 27/322 (8%)
Query: 154 KTPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVC 213
+ KV AP + +N D + + + + L S ++ + D G V
Sbjct: 8 RESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA--VH 65
Query: 214 SVQWTREGSYISVGTNLGQVQVWD-----GTQCKRVRTFGGHQTRAGVLAWN---SRILS 265
+ + G Y+ V G+V + D T ++ ++ ++
Sbjct: 66 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIA 125
Query: 266 SGSRDRNILQHDLRVSS----------DYICKLAGHKSEVCGLKWSHDDREL-ASGGNDN 314
+ D Y + + V + SH E +
Sbjct: 126 GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETG 185
Query: 315 QLLVWNQHSQQPTLRLTEHTAA--VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL 372
++L+ + + L+ TE +A + + + + +T G +
Sbjct: 186 KILLVDY-TDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK--LVVIDTKEGKLV 242
Query: 373 NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS-TLTGHSLRVLYLATS 431
DTG Q + N ++ + + + ++ ++L +
Sbjct: 243 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA 302
Query: 432 PDGQTIVTGAGDETLRFWNVFP 453
G ++ + +
Sbjct: 303 LGGGSLFIKTHPNSQYLYVDAT 324
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 39.4 bits (91), Expect = 8e-04
Identities = 24/194 (12%), Positives = 49/194 (25%), Gaps = 22/194 (11%)
Query: 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-----EHTAAVKA 339
L + V + S R L G D ++ + + ++PT E + +
Sbjct: 55 KTVLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113
Query: 340 IAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN------------SVDTGSQVCNLAWS 387
+A I + +V + S
Sbjct: 114 KMEGWEDKYAIAGAYWPPQYVI--MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS 171
Query: 388 KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLY-LATSPDGQTIVTGAGDETL 446
E + +I++ Y + + T + R L+ + +T A
Sbjct: 172 HYRPEFIVN-VKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 230
Query: 447 RFWNVFPSLKAPAL 460
K A+
Sbjct: 231 LVVIDTKEGKLVAI 244
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 38.2 bits (88), Expect = 0.002
Identities = 41/334 (12%), Positives = 81/334 (24%), Gaps = 65/334 (19%)
Query: 192 LWTASNSKVTRLC-DLGPGDSVCSVQWTREGSYISVGTNL-GQVQVWDGT--QCKRVRTF 247
LW + V + S E Y G Q + DG + K++++
Sbjct: 90 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST 149
Query: 248 GGHQTRAGVLAWNSRILS------------SGSRDRNILQHDLRVSSDYICKLAGHKSEV 295
G R+ + + IL D ++ + +
Sbjct: 150 RGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFL 209
Query: 296 CGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPH----QSSLLA 351
R + N LV + + + + + +
Sbjct: 210 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVW 269
Query: 352 SGGGTADRCIRFWNTSNG----------HQLNSVDTGSQVCNLAWSKNVNELVST----H 397
+ D + T ++ GS + + V
Sbjct: 270 ATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGS-LFIKTHPNSQYLYVDATLNPE 328
Query: 398 GYSQNQIMVW--------------KYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG- 442
+ V+ K +A+ + +T RV+ + DG +
Sbjct: 329 AEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWN 388
Query: 443 ------------DETLRFWNVFPSLKAPALVKDT 464
D+TL +V +K LV T
Sbjct: 389 GKDQESALVVVDDKTLELKHV---IKDERLVTPT 419
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.9 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.9 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.89 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.88 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.83 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.81 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.77 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.71 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.69 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.62 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.61 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.61 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.59 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.47 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.32 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.31 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.3 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.23 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.21 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.15 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.13 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.1 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.08 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.05 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.0 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.93 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.87 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.86 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.85 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.81 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.78 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.76 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.62 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.47 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.45 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.38 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.38 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.29 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.28 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 98.21 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.18 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.87 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.81 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.73 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.68 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.63 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.53 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.47 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.44 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.41 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.38 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.37 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.24 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.22 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.15 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.98 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 96.87 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 96.57 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.05 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.76 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.61 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 95.18 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 95.12 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 94.76 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 93.81 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 93.11 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.93 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 92.85 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 90.44 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 83.92 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 81.66 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-40 Score=318.81 Aligned_cols=279 Identities=22% Similarity=0.289 Sum_probs=246.2
Q ss_pred CCCCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcE----EEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 165 LQDDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKV----TRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 165 ~~~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~----~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
+.+.-.|.+++|+++ .+|+++.++.|+|||+.++.. ......+|.+.|.+++|+|+|++|++|+.||.|++||+.
T Consensus 48 ~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~ 127 (337)
T d1gxra_ 48 LNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred CCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence 345567899999997 677888899999999976532 222233788999999999999999999999999999987
Q ss_pred C--CeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCc
Q 011916 240 Q--CKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQ 315 (475)
Q Consensus 240 ~--~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~ 315 (475)
. .+....+..|...+.+++|+ +.++++++.|+.|.+||+. ..........|...|.+++|++++..+++|+.|+.
T Consensus 128 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~-~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~ 206 (337)
T d1gxra_ 128 APTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT 206 (337)
T ss_dssp CC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 4 45667788999999999994 6899999999999999998 56777888899999999999999999999999999
Q ss_pred EEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEE
Q 011916 316 LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVS 395 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~ 395 (475)
|++||+++++.+..+ .|...|.+++|+|++..+++ ++ .|+.|++||+.+++......+...|.+++|+|++++|++
T Consensus 207 v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~-~~--~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s 282 (337)
T d1gxra_ 207 VRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAV-GM--ESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEE-EE--TTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ccccccccceeeccc-ccccceEEEEEcccccccce-ec--cccccccccccccccccccccccccceEEECCCCCEEEE
Confidence 999999999887765 47899999999999986555 43 799999999999999888888999999999999999998
Q ss_pred EEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 396 THGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 396 ~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
++.||.|++||+.+++.+..+. |...|++++|+||+++|++|+.||+|+|||+
T Consensus 283 --~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 283 --TGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp --EETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred --EeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 7899999999999999888765 7889999999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.8e-38 Score=303.41 Aligned_cols=271 Identities=18% Similarity=0.290 Sum_probs=234.4
Q ss_pred EEecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--EEecC
Q 011916 173 LVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--RTFGG 249 (475)
Q Consensus 173 ~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--~~~~~ 249 (475)
+++++|+ +.++.+.++.|++|++.+....+.+. +|.+.|++++|+|+|++||+|+.||+|+|||+.+++.. ..+.+
T Consensus 22 ~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~-~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~ 100 (311)
T d1nr0a1 22 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 100 (311)
T ss_dssp CCEECTTSSEEEEEETTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred EEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEc-CCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccccc
Confidence 4677775 67777889999999999998888775 89999999999999999999999999999999887543 56788
Q ss_pred CCCceEEEEeC--CCEEEEEeC--CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCC
Q 011916 250 HQTRAGVLAWN--SRILSSGSR--DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE-LASGGNDNQLLVWNQHSQ 324 (475)
Q Consensus 250 h~~~v~~l~~~--~~~l~sgs~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~-lasg~~Dg~I~iwd~~~~ 324 (475)
|...|.+++|+ +.+|++++. ++.+.+|+++ .++....+.+|...|.+++|+|++++ |++|+.|+.|++||++++
T Consensus 101 ~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~-~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~ 179 (311)
T d1nr0a1 101 FSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF 179 (311)
T ss_dssp SSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB
T ss_pred ccCccccccccccccccccccccccccccccccc-cccccccccccccccccccccccceeeeccccccccccccccccc
Confidence 99999999995 578888875 4569999998 55666778899999999999998884 888999999999999999
Q ss_pred ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------CCCCeeEEEEcCCCCeEEEE
Q 011916 325 QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--------TGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 325 ~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--------~~~~v~~l~~s~~~~~l~~~ 396 (475)
+....+..|...|.+++|+|++..+++ ++ .|+.|++||+.++..+..+. |...|.+++|+|++++|++
T Consensus 180 ~~~~~~~~~~~~i~~v~~~p~~~~l~~-~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~t- 255 (311)
T d1nr0a1 180 KFKSTFGEHTKFVHSVRYNPDGSLFAS-TG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIAS- 255 (311)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEE-EE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEE-
T ss_pred ccccccccccccccccccCcccccccc-cc--ccccccccccccccccccccccccccccccccccccccCCCCCEEEE-
Confidence 999999999999999999999995555 43 79999999999998877653 4568999999999999998
Q ss_pred EecCCCeEEEEECCCCceEEEecCCCc---ceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 397 HGYSQNQIMVWKYPSMAKVSTLTGHSL---RVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~~~~~l~~h~~---~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
|+.||.|+|||+.+++.+.++..|.. .+.++.| +++.|++++.||.|++||.+
T Consensus 256 -gs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 256 -ASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPE 311 (311)
T ss_dssp -EETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred -EeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence 88999999999999999999887643 3455555 55679999999999999974
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-37 Score=295.76 Aligned_cols=278 Identities=23% Similarity=0.394 Sum_probs=254.4
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
+.-.|++++|+|+ + +++++.|+.|+|||+.+++....+. +|...|.+++|++++.+++++..++.+.+|+....+..
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECI 94 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEE
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCCCcEEEEeeecccccccccccccccccccccccccc
Confidence 3456899999986 4 5666779999999999999888876 78999999999999999999999999999999999999
Q ss_pred EEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 011916 245 RTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQH 322 (475)
Q Consensus 245 ~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~ 322 (475)
..+.+|...+.++.| ++..+++++.|+.+.+||++ .+.....+.+|...+.+++|++++.+|++++.|+.|++|++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~ 173 (317)
T d1vyhc1 95 RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA 173 (317)
T ss_dssp ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cccccccccceeeeccCCCceEEeeccCcceeEeecc-cceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeec
Confidence 999999999999999 46899999999999999998 567788889999999999999999999999999999999999
Q ss_pred CCceeEEEeccccceeEEEECCCCCc-------------------EEEEecCCCCCeEEEEECCCCceeeeec-CCCCee
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSS-------------------LLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVC 382 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~-------------------ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~ 382 (475)
+++.+..+..|...+.+++|+|++.. ++++++ .|+.|++||+.+++++..+. +...|.
T Consensus 174 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~v~ 251 (317)
T d1vyhc1 174 TKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVR 251 (317)
T ss_dssp TCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEE
T ss_pred cceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc--CCCEEEEEECCCCcEEEEEeCCCCCEE
Confidence 99999999999999999999987532 455554 89999999999999988875 678899
Q ss_pred EEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 383 NLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 383 ~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
+++|+|++++|++ |+.||.|++||+.+++.+..+.+|...|++++|+|++++|++|+.||+|+|||
T Consensus 252 ~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 252 GVLFHSGGKFILS--CADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEEECSSSSCEEE--EETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEEECCCCCEEEE--EECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 9999999999998 88999999999999999999999999999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.6e-37 Score=304.42 Aligned_cols=280 Identities=23% Similarity=0.368 Sum_probs=233.9
Q ss_pred CCCceeEEecCCC-CEEEEEcCCeEEEEECCCCcEEEEee-----------------CCCCCcEEEEEEcCCCCEEEEEe
Q 011916 167 DDFYLNLVDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCD-----------------LGPGDSVCSVQWTREGSYISVGT 228 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~-----------------~~~~~~V~~v~~spdg~~la~g~ 228 (475)
+.-.|++++|+++ .+||+|.|+.|+|||+.+++....+. ..|...|.+++|+|+|++|++|+
T Consensus 61 H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~ 140 (388)
T d1erja_ 61 HTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA 140 (388)
T ss_dssp CSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecc
Confidence 4456899999997 68888889999999999988765542 13567799999999999999999
Q ss_pred CCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 229 NLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 229 ~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.||.|++||...++.+..+.+|...|.+++|+ +..+++++.++.+++||++ ..........+...+....+.+++++
T Consensus 141 ~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (388)
T d1erja_ 141 EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTLSIEDGVTTVAVSPGDGKY 219 (388)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEEECSSCEEEEEECSTTCCE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccceeeeeeecc-ccccccccccccccccccccCCCCCe
Confidence 99999999999999999999999999999995 5799999999999999998 44455555555544444444448899
Q ss_pred EEEEeCCCcEEEEECCCCceeEEE-------eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee------
Q 011916 307 LASGGNDNQLLVWNQHSQQPTLRL-------TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN------ 373 (475)
Q Consensus 307 lasg~~Dg~I~iwd~~~~~~~~~~-------~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~------ 373 (475)
|++|+.|+.|++||..++..+..+ .+|...|.+++|+|++..|++ ++ .|+.|++||+.++....
T Consensus 220 l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s-~~--~d~~i~iwd~~~~~~~~~~~~~~ 296 (388)
T d1erja_ 220 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS-GS--LDRSVKLWNLQNANNKSDSKTPN 296 (388)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE-EE--TTSEEEEEEC-------------
T ss_pred EEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEE-EE--CCCcEEEEeccCCcccccccccc
Confidence 999999999999999988776654 357889999999999986555 43 79999999998764332
Q ss_pred -------eecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEE------CCCCCEEEEE
Q 011916 374 -------SVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLAT------SPDGQTIVTG 440 (475)
Q Consensus 374 -------~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~------spdg~~l~s~ 440 (475)
...+...|.+++|+|++++|++ |+.||.|++||+.+++++.++++|.+.|+++++ +|++.+||||
T Consensus 297 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s--g~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~ 374 (388)
T d1erja_ 297 SGTCEVTYIGHKDFVLSVATTQNDEYILS--GSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374 (388)
T ss_dssp --CEEEEEECCSSCEEEEEECGGGCEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred ccceeeecccccceEEEEEECCCCCEEEE--EeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE
Confidence 2245678999999999999998 889999999999999999999999999999975 6789999999
Q ss_pred eCCCCEEEEecC
Q 011916 441 AGDETLRFWNVF 452 (475)
Q Consensus 441 s~Dg~I~iW~~~ 452 (475)
+.||+|+||++.
T Consensus 375 s~Dg~I~iW~~~ 386 (388)
T d1erja_ 375 SGDCKARIWKYK 386 (388)
T ss_dssp ETTSEEEEEEEE
T ss_pred eCCCEEEEEeee
Confidence 999999999985
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.1e-35 Score=283.90 Aligned_cols=277 Identities=19% Similarity=0.364 Sum_probs=245.0
Q ss_pred CCCceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---
Q 011916 167 DDFYLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQC--- 241 (475)
Q Consensus 167 ~d~~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~--- 241 (475)
+.-.|++++|+++ . +++++.||.|+|||+.+++....+. .|...|.+++|+|+++++++|+.|+.+.+|+....
T Consensus 54 H~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~ 132 (340)
T d1tbga_ 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN 132 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE-CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSC
T ss_pred CCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe-cccccEEeeEeeccceeeeeecccceeecccccccccc
Confidence 3456899999987 3 6666779999999999999888876 68899999999999999999999999999997653
Q ss_pred -eeeEEecCCCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011916 242 -KRVRTFGGHQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 242 -~~~~~~~~h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iw 319 (475)
.....+.+|........+ .+..+..+..+.....++.. ..........+...+....+.+.+.++++|+.|+.|++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~ 211 (340)
T d1tbga_ 133 VRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIE-TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211 (340)
T ss_dssp CCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETT-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred cccceecccccccccccccccccccccccccccccccccc-cccccccccccceeEeeeccccccceeEEeecCceEEEE
Confidence 455667788887777666 46888889999999999887 455566667788889999999999999999999999999
Q ss_pred ECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec---CCCCeeEEEEcCCCCeEEEE
Q 011916 320 NQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD---TGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 320 d~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~---~~~~v~~l~~s~~~~~l~~~ 396 (475)
|+++++++..+.+|...|.+++|+|++..|++ ++ .|+.|++||+.....+..+. +...+.+++|+|++++|++
T Consensus 212 d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s-~s--~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~- 287 (340)
T d1tbga_ 212 DVREGMCRQTFTGHESDINAICFFPNGNAFAT-GS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA- 287 (340)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEECTTSSEEEE-EE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEE-
T ss_pred ECCCCcEEEEEeCCCCCeEEEEECCCCCEEEE-Ee--CCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEE-
Confidence 99999999999999999999999999985554 44 79999999999998877763 4567999999999999999
Q ss_pred EecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 397 HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
|+.||.|++||+.+++.+..+.+|.+.|++++|+||+.+|+||+.||+|+|||
T Consensus 288 -g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 288 -GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -EETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -EECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 88999999999999999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3e-35 Score=285.60 Aligned_cols=261 Identities=22% Similarity=0.272 Sum_probs=229.2
Q ss_pred EeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-----eEEecCCCCceEEEEe--CCCEEEEEeCCCcEEE
Q 011916 203 LCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR-----VRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQ 275 (475)
Q Consensus 203 ~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~-----~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~i 275 (475)
+..++|...|++++|+|+|++||+|+ ||.|+|||+.+... .....+|...|.+++| ++++|++|+.||.|++
T Consensus 45 ~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~i 123 (337)
T d1gxra_ 45 INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123 (337)
T ss_dssp EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEE
T ss_pred EEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccc
Confidence 33448999999999999999999997 79999999876532 2234579999999999 5689999999999999
Q ss_pred EECCCCC-ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 276 HDLRVSS-DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 276 wd~~~~~-~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
||+.... .....+..|...|..+.|+|++.++++++.|+.|++||+.+++.......|...|.+++|++++..+++.+
T Consensus 124 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~- 202 (337)
T d1gxra_ 124 WDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG- 202 (337)
T ss_dssp EECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE-
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 9987433 45567788999999999999999999999999999999999999888889999999999999998665543
Q ss_pred CCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCC
Q 011916 355 GTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDG 434 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg 434 (475)
.|+.|++||+++++.+..+.+...|.+++|+|+++.+++ |+.++.|++||+.+.+.. ....|...|++++|+|+|
T Consensus 203 --~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--~~~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g 277 (337)
T d1gxra_ 203 --LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV--GMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCG 277 (337)
T ss_dssp --TTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTS
T ss_pred --ccccccccccccceeecccccccceEEEEEcccccccce--eccccccccccccccccc-cccccccccceEEECCCC
Confidence 799999999999999999999999999999999999998 889999999999988765 456799999999999999
Q ss_pred CEEEEEeCCCCEEEEecCCCCCCCCcccCCcccccc
Q 011916 435 QTIVTGAGDETLRFWNVFPSLKAPALVKDTSLWSLG 470 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~~~~~~~~~~v~s~~ 470 (475)
++|++++.||.|++||+..+.......+...++++.
T Consensus 278 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~ 313 (337)
T d1gxra_ 278 KWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 313 (337)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEE
Confidence 999999999999999999988777766766666554
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.8e-35 Score=287.14 Aligned_cols=277 Identities=15% Similarity=0.200 Sum_probs=222.0
Q ss_pred eeEEecCCC-CEEEE-EcCCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee--E
Q 011916 171 LNLVDWSSQ-NVLAV-GLGTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV--R 245 (475)
Q Consensus 171 v~~l~ws~~-~~la~-~~~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~--~ 245 (475)
|.|++|+++ .++++ +.++.|+||+..+++......+ +|.+.|.+++|+|++++|++|+.|++|+|||+.++... .
T Consensus 10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~ 89 (371)
T d1k8kc_ 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 89 (371)
T ss_dssp CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccc
Confidence 789999997 56554 4578999999998875544433 79999999999999999999999999999999877544 4
Q ss_pred EecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCc---cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEE
Q 011916 246 TFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSD---YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWN 320 (475)
Q Consensus 246 ~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd 320 (475)
.+.+|...|.+++| +++.|++|+.|+.|++|++..... .......|...|.+++|+|++++|++|+.|+.|++||
T Consensus 90 ~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~ 169 (371)
T d1k8kc_ 90 VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 169 (371)
T ss_dssp ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred ccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEe
Confidence 45688999999999 468999999999999999875433 2344567899999999999999999999999999999
Q ss_pred CCCC------------------ceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCe
Q 011916 321 QHSQ------------------QPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQV 381 (475)
Q Consensus 321 ~~~~------------------~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v 381 (475)
.... ..+.....|...|.+++|+|++..|+ +++ .|+.|++||+.+++.+..+. +..+|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~-s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v 246 (371)
T d1k8kc_ 170 AYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA-WVS--HDSTVCLADADKKMAVATLASETLPL 246 (371)
T ss_dssp CCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE-EEE--TTTEEEEEEGGGTTEEEEEECSSCCE
T ss_pred eccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccc-ccc--cCCcceEEeeecccceeeeecccccc
Confidence 7642 24556667899999999999998554 444 79999999999999988875 45689
Q ss_pred eEEEEcCCCCeEEEEEecCCCeEEEEECCC--CceEE---------------------------------------EecC
Q 011916 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPS--MAKVS---------------------------------------TLTG 420 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~--~~~~~---------------------------------------~l~~ 420 (475)
.+++|+|++++|++ |. |+.+++|.... ..... ....
T Consensus 247 ~s~~fs~d~~~la~--g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (371)
T d1k8kc_ 247 LAVTFITESSLVAA--GH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323 (371)
T ss_dssp EEEEEEETTEEEEE--ET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSS
T ss_pred eeeeecCCCCEEEE--Ec-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceeccc
Confidence 99999999987776 64 66666654322 11100 0013
Q ss_pred CCcceEEEEECCCC----CEEEEEeCCCCEEEEecCC
Q 011916 421 HSLRVLYLATSPDG----QTIVTGAGDETLRFWNVFP 453 (475)
Q Consensus 421 h~~~V~~l~~spdg----~~l~s~s~Dg~I~iW~~~~ 453 (475)
|.+.|+++++.+.+ ..|+|++.||.|+|||+..
T Consensus 324 H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp SSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred ccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 88899999997754 4689999999999999854
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.1e-35 Score=280.37 Aligned_cols=249 Identities=16% Similarity=0.213 Sum_probs=221.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCcc-
Q 011916 208 PGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDY- 284 (475)
Q Consensus 208 ~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~- 284 (475)
+.+.+..++++|+|+.||.+.. +.|.+||+.+.+....+.+|...|++++| ++++|++|+.||+|++||+......
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~~-~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~ 94 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEET-TEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE
T ss_pred CCCCeEEEEEcCCCCEEEEEeC-CEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc
Confidence 4456778899999999999864 67999999999999999999999999999 5799999999999999999865443
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGN--DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~--Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
...+..|...|.+++|+|++++|++++. +..++||++++++....+.+|...|.+++|+|++.+++++|+ .|+.|+
T Consensus 95 ~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs--~d~~i~ 172 (311)
T d1nr0a1 95 KTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGS--DDNTVA 172 (311)
T ss_dssp EEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEE--TTSCEE
T ss_pred ccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccc--cccccc
Confidence 3557889999999999999999999986 456999999999998899999999999999999998888876 899999
Q ss_pred EEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-------CCCcceEEEEECCCC
Q 011916 363 FWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-------GHSLRVLYLATSPDG 434 (475)
Q Consensus 363 iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-------~h~~~V~~l~~spdg 434 (475)
+||+++++....+. +...|.++.|+|+++++++ ++.|+.|++||..++..+..+. +|...|++++|+|++
T Consensus 173 i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~--~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~ 250 (311)
T d1nr0a1 173 IFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFAS--TGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 250 (311)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred cccccccccccccccccccccccccCcccccccc--ccccccccccccccccccccccccccccccccccccccccCCCC
Confidence 99999999888875 5788999999999999998 7889999999999988877764 588999999999999
Q ss_pred CEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 435 QTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 435 ~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
++|++|+.||+|+|||+.++.....+.
T Consensus 251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~ 277 (311)
T d1nr0a1 251 TKIASASADKTIKIWNVATLKVEKTIP 277 (311)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEE
Confidence 999999999999999998887655443
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2e-33 Score=266.00 Aligned_cols=258 Identities=21% Similarity=0.319 Sum_probs=231.6
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|.+.|++|+|+|++++||+|+.||+|+|||+.+++.+.++.+|...|.+++|+ +.+++++..++.+.+|+.. ....
T Consensus 15 GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 93 (317)
T d1vyhc1 15 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ-GFEC 93 (317)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT-SSCE
T ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc-cccc
Confidence 899999999999999999999999999999999999999999999999999995 6899999999999999988 5566
Q ss_pred EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEE
Q 011916 285 ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFW 364 (475)
Q Consensus 285 ~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iw 364 (475)
...+..|...+.++.|+++++.+++++.|+.+++||+++++.+..+..|...+.+++|+|++..+ ++++ .|+.|++|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~--~d~~v~~~ 170 (317)
T d1vyhc1 94 IRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI-ASCS--NDQTVRVW 170 (317)
T ss_dssp EECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE-EEEE--TTSCEEEE
T ss_pred ccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEE-EEEe--CCCeEEEE
Confidence 77788899999999999999999999999999999999999999999999999999999999855 4544 89999999
Q ss_pred ECCCCceeeeec-CCCCeeEEEEcCCCC--------------------eEEEEEecCCCeEEEEECCCCceEEEecCCCc
Q 011916 365 NTSNGHQLNSVD-TGSQVCNLAWSKNVN--------------------ELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL 423 (475)
Q Consensus 365 d~~~~~~~~~~~-~~~~v~~l~~s~~~~--------------------~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~ 423 (475)
++.+++.+..+. +...+..+.|++++. .+++ ++.|+.|++||+.+++.+.++.+|..
T Consensus 171 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~~~~~~~~~~~~~~~~~~~ 248 (317)
T d1vyhc1 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS--GSRDKTIKMWDVSTGMCLMTLVGHDN 248 (317)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE--EETTSEEEEEETTTTEEEEEEECCSS
T ss_pred eeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe--ccCCCEEEEEECCCCcEEEEEeCCCC
Confidence 999999888774 567788888887643 4555 78999999999999999999999999
Q ss_pred ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 424 RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 424 ~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
.|.+++|+|++++|++|+.||.|+|||+..++....+. +...|.++.
T Consensus 249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~ 296 (317)
T d1vyhc1 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLD 296 (317)
T ss_dssp CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEE
T ss_pred CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 99999999999999999999999999999888776654 455565543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-32 Score=270.59 Aligned_cols=281 Identities=22% Similarity=0.416 Sum_probs=226.9
Q ss_pred EEEEEcCCeEEEEECCCCcEEEE---eeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec---------
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRL---CDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG--------- 248 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~---~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~--------- 248 (475)
.+....++.+.+|+....+.... -.++|.+.|+||+|+|||++||+|+ ||.|+|||+.+++.+..+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDP 109 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC--------
T ss_pred ccccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccc
Confidence 34556677888898765543221 2237999999999999999999987 8999999999988876654
Q ss_pred ---------CCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 249 ---------GHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 249 ---------~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
.|...|.+++|+ +++|++|+.||.|++||.. ....+....+|...|.++.|++++..+++++.++.|+
T Consensus 110 ~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~ 188 (388)
T d1erja_ 110 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-NRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188 (388)
T ss_dssp ---------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred cccccccccCCCCCEEEEEECCCCCcceeccccccccccccc-ccccccccccccccccccccccccccccccccceeee
Confidence 456679999994 6899999999999999998 6777888899999999999999999999999999999
Q ss_pred EEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec--------CCCCeeEEEEcCC
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD--------TGSQVCNLAWSKN 389 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~--------~~~~v~~l~~s~~ 389 (475)
+||.++.........+.. ...+.+.+....++++++ .|+.|++||+.++..+..+. +...|.+++|+|+
T Consensus 189 ~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 265 (388)
T d1erja_ 189 IWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 265 (388)
T ss_dssp EEETTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTT
T ss_pred eeeccccccccccccccc-cccccccCCCCCeEEEEc--CCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCC
Confidence 999999887776665554 455556554444666655 89999999999998877663 4567999999999
Q ss_pred CCeEEEEEecCCCeEEEEECCCCc------------eEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCC
Q 011916 390 VNELVSTHGYSQNQIMVWKYPSMA------------KVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKA 457 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~~~------------~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~ 457 (475)
+++|++ |+.|+.|++||+.++. .......|...|.+++|+|++++|++|+.||+|++||+.++...
T Consensus 266 ~~~l~s--~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~ 343 (388)
T d1erja_ 266 GQSVVS--GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343 (388)
T ss_dssp SSEEEE--EETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred CCEEEE--EECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence 999998 8899999999987543 34455678999999999999999999999999999999988776
Q ss_pred CCcc-cCCcccc
Q 011916 458 PALV-KDTSLWS 468 (475)
Q Consensus 458 ~~~~-~~~~v~s 468 (475)
..+. |...+.+
T Consensus 344 ~~l~~H~~~V~~ 355 (388)
T d1erja_ 344 LMLQGHRNSVIS 355 (388)
T ss_dssp EEEECCSSCEEE
T ss_pred EEEeCCCCCEEE
Confidence 5543 3344433
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-31 Score=258.47 Aligned_cols=270 Identities=19% Similarity=0.274 Sum_probs=216.1
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h 250 (475)
+.|++++++.+++++.|+.|+|||+.+++....+. +|.+.|.+++|+++ .+|++|+.||.|++|+....+.......+
T Consensus 16 itc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~-~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~ 93 (355)
T d1nexb2 16 ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGH 93 (355)
T ss_dssp EEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCC
T ss_pred EEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEE-CCCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccc
Confidence 57899987778888889999999999999888886 89999999999985 58999999999999998776544332211
Q ss_pred C-------------------------------------------------------------------CceEEEEeCCCE
Q 011916 251 Q-------------------------------------------------------------------TRAGVLAWNSRI 263 (475)
Q Consensus 251 ~-------------------------------------------------------------------~~v~~l~~~~~~ 263 (475)
. ..+.....++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 173 (355)
T d1nexb2 94 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNI 173 (355)
T ss_dssp SSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTE
T ss_pred cccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccce
Confidence 1 122223334566
Q ss_pred EEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEEC
Q 011916 264 LSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWS 343 (475)
Q Consensus 264 l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~s 343 (475)
++++..|+.|++||++ ....+....++...+.++.|++++.++++++.|+.|++||++++..+..+.+|...|.+++|+
T Consensus 174 ~~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~ 252 (355)
T d1nexb2 174 VVSGSYDNTLIVWDVA-QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS 252 (355)
T ss_dssp EEEEETTSCEEEEETT-TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC
T ss_pred eeeecccceeeeeecc-cccceeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc
Confidence 6777777777777776 455667777888999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE-EecCCC
Q 011916 344 PHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS-TLTGHS 422 (475)
Q Consensus 344 p~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~-~l~~h~ 422 (475)
++ ++++++ .|+.|++||+.++.......+........+++++..+++ | .|+.|++||+++++.+. .+.+|.
T Consensus 253 ~~---~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--g-~d~~i~vwd~~tg~~~~~~~~~~~ 324 (355)
T d1nexb2 253 DK---FLVSAA--ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVS--G-SENQFNIYNLRSGKLVHANILKDA 324 (355)
T ss_dssp SS---EEEEEC--TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEE--E-ETTEEEEEETTTCCBCCSCTTTTC
T ss_pred cc---eeeeee--cccccccccccccceecccccCCceEEEEEcCCCCEEEE--E-eCCEEEEEECCCCCEEEEEecCCC
Confidence 63 566655 899999999999887766654444444456677766555 4 58999999999999875 567899
Q ss_pred cceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 423 LRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 423 ~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
..|++++|+|+ .++++++.||+++||.++
T Consensus 325 ~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp SEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred CCEEEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence 99999999987 478888999997776553
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.1e-32 Score=271.14 Aligned_cols=240 Identities=14% Similarity=0.233 Sum_probs=202.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe--eeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCC-c
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK--RVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSS-D 283 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~--~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~-~ 283 (475)
.++|+|++|+|+|++||+|+.||.|+|||+.+++ .+..+.+|...|.+++|+ +++|++|+.|++|++||+.... .
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 4789999999999999999999999999998775 667788999999999994 7899999999999999997433 2
Q ss_pred cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee----EEEeccccceeEEEECCCCCcEEEEecCCCCC
Q 011916 284 YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT----LRLTEHTAAVKAIAWSPHQSSLLASGGGTADR 359 (475)
Q Consensus 284 ~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~----~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~ 359 (475)
....+.+|...|.+++|+|+++.|++|+.|+.|++|++...... .....|...|.+++|+|++..| ++|+ .|+
T Consensus 87 ~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l-~s~s--~D~ 163 (371)
T d1k8kc_ 87 PTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL-AAGS--CDF 163 (371)
T ss_dssp EEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE-EEEE--TTS
T ss_pred cccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccce-eccc--cCc
Confidence 34456788999999999999999999999999999998766543 2334588999999999999855 5544 899
Q ss_pred eEEEEECCCCc------------------eeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC
Q 011916 360 CIRFWNTSNGH------------------QLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG 420 (475)
Q Consensus 360 ~I~iwd~~~~~------------------~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~ 420 (475)
.|++||..... .+... .+...|.+++|+|+++.|++ ++.|+.|++||+.++..+..+..
T Consensus 164 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s--~~~d~~i~iwd~~~~~~~~~~~~ 241 (371)
T d1k8kc_ 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAW--VSHDSTVCLADADKKMAVATLAS 241 (371)
T ss_dssp CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEE--EETTTEEEEEEGGGTTEEEEEEC
T ss_pred EEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccc--cccCCcceEEeeecccceeeeec
Confidence 99999986532 22222 35567999999999999988 77899999999999999999999
Q ss_pred CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCC
Q 011916 421 HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 421 h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~ 454 (475)
|..+|.+++|+||+++|++| .|+.+++|.....
T Consensus 242 ~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 242 ETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA 274 (371)
T ss_dssp SSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred ccccceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence 99999999999999877765 5788888776544
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4e-32 Score=257.84 Aligned_cols=273 Identities=16% Similarity=0.207 Sum_probs=212.9
Q ss_pred CCCceeEEecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee-
Q 011916 167 DDFYLNLVDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR- 243 (475)
Q Consensus 167 ~d~~v~~l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~- 243 (475)
+.-.|++++|+|+ .+++++.|+.|++||+.+++....+...|...|++++|+|+|++ ++++.|+.+++|+......
T Consensus 11 H~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~ 89 (299)
T d1nr0a2 11 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVD 89 (299)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSC
T ss_pred CCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCcccc
Confidence 3456999999997 36666779999999999999888775578899999999999975 5566789999999765432
Q ss_pred --eEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 011916 244 --VRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVW 319 (475)
Q Consensus 244 --~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iw 319 (475)
......+...+.+++|. +.++++ +.++.+.+|+.. +..... ....+.+++|+|++++|++|+.|+.|++|
T Consensus 90 ~~~~~~~~~~~~~~~~~~s~~g~~~~~-~~~~~i~~~~~~---~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~ 163 (299)
T d1nr0a2 90 SSKAVANKLSSQPLGLAVSADGDIAVA-ACYKHIAIYSHG---KLTEVP--ISYNSSCVALSNDKQFVAVGGQDSKVHVY 163 (299)
T ss_dssp TTSCCEEECSSCEEEEEECTTSSCEEE-EESSEEEEEETT---EEEEEE--CSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred ccccccccccccccccccccccccccc-cccccccccccc---cccccc--ccccccccccccccccccccccccccccc
Confidence 12233567788889884 455554 456789999864 222222 34568899999999999999999999999
Q ss_pred ECCCCceeE-EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee----cCCCCeeEEEEcCCCCeEE
Q 011916 320 NQHSQQPTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV----DTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 320 d~~~~~~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~----~~~~~v~~l~~s~~~~~l~ 394 (475)
|+++++... ....|...|.+++|+|++.++++ ++ .|+.|++||+.++..+... .+...|.+++|+|++++|+
T Consensus 164 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~--~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~ 240 (299)
T d1nr0a2 164 KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA-TD--QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240 (299)
T ss_dssp EEETTEEEEEEEEECSSCEEEEEECTTSSEEEE-EE--TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEE
T ss_pred ccccccccccccccccccccccccccccccccc-cc--cccccccccccccccccccccccccccccccccccccccceE
Confidence 998876543 34568999999999999986655 33 7999999999888766544 2567899999999999999
Q ss_pred EEEecCCCeEEEEECCCCce--EEEecCCC-cceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 395 STHGYSQNQIMVWKYPSMAK--VSTLTGHS-LRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~--~~~l~~h~-~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+ |+.||.|++||+.++.. +.....|. ..|..+.| +++.+|++++.|++|++||+.
T Consensus 241 s--gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 241 T--GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp E--EETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred E--EcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 8 88999999999987643 33333444 45666655 667899999999999999984
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-31 Score=252.10 Aligned_cols=282 Identities=21% Similarity=0.356 Sum_probs=225.6
Q ss_pred CCceeccCCCCCCCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 011916 155 TPHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQ 234 (475)
Q Consensus 155 ~p~~~l~~p~~~~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~ 234 (475)
.+.++|.. +.+.. +.|++|+++.+++++.|+.|+|||+.+++....+. +|...|.+++|+++ +|++|+.|+.++
T Consensus 7 ~~~~~l~G--H~~~V-~s~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~~~~--~l~s~s~D~~~~ 80 (342)
T d2ovrb2 7 KSPKVLKG--HDDHV-ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRDN--IIISGSTDRTLK 80 (342)
T ss_dssp CCCEEEEC--STTSC-EEEEEEETTEEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEETT--EEEEEETTSCEE
T ss_pred CcCEEECC--cCCce-EEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEe-CCCCCEEEEEeCCC--ccccceeccccc
Confidence 35566663 33333 46789988888888999999999999999888775 89999999999874 999999999999
Q ss_pred EEECCCCeeeEEecCCCCceE----------------------------------------EEEeCCCEEEEEeCCCcEE
Q 011916 235 VWDGTQCKRVRTFGGHQTRAG----------------------------------------VLAWNSRILSSGSRDRNIL 274 (475)
Q Consensus 235 iwd~~~~~~~~~~~~h~~~v~----------------------------------------~l~~~~~~l~sgs~dg~I~ 274 (475)
+|+............+...+. ........++.++.|+.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~ 160 (342)
T d2ovrb2 81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK 160 (342)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEE
T ss_pred ccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEE
Confidence 999877655443332222221 1122345778888899999
Q ss_pred EEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 275 QHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 275 iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
+||.+ ....+..+.+|...+..+.+ ++.+|++|+.||.|++||++.++.+..+..|...+.+++++++ ++++++
T Consensus 161 ~~d~~-~~~~~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~s 234 (342)
T d2ovrb2 161 VWDPE-TETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDN---ILVSGN 234 (342)
T ss_dssp EEEGG-GTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETT---EEEEEE
T ss_pred Eeecc-cceeeEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCC---EEEEEc
Confidence 99987 56677788888887776655 6889999999999999999999999999999999999988764 566655
Q ss_pred CCCCCeEEEEECCCCceeeeec----CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec-----CCCcce
Q 011916 355 GTADRCIRFWNTSNGHQLNSVD----TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT-----GHSLRV 425 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~-----~h~~~V 425 (475)
.|+.|++||+...+....+. +...+.++.++ ++++++ |+.||.|++||+++++.+.++. +|...|
T Consensus 235 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s--~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v 308 (342)
T d2ovrb2 235 --ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVIT--SSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV 308 (342)
T ss_dssp --TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEE--EETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred --CCCEEEEEecccccccccccccceeeeceeecccC--CCeeEE--EcCCCEEEEEECCCCCEEEEEecccCCCCCCCE
Confidence 89999999999988877764 33455666554 567777 7799999999999999988774 577889
Q ss_pred EEEEECCCCCEEEEEeCCCC----EEEEecCCC
Q 011916 426 LYLATSPDGQTIVTGAGDET----LRFWNVFPS 454 (475)
Q Consensus 426 ~~l~~spdg~~l~s~s~Dg~----I~iW~~~~~ 454 (475)
++++|+|++.+|++|+.||+ |++||++..
T Consensus 309 ~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~ 341 (342)
T d2ovrb2 309 WRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341 (342)
T ss_dssp EEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence 99999999999999999996 999999753
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-31 Score=259.07 Aligned_cols=275 Identities=17% Similarity=0.281 Sum_probs=213.1
Q ss_pred eeEEecCCC-CEEEEEcCCeEEE--EECCCCcE--EEEeeCCC-CCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCe
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYL--WTASNSKV--TRLCDLGP-GDSVCSVQWTR--EGSYISVGTNLGQVQVWDGTQCK 242 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~l--w~~~~~~~--~~~~~~~~-~~~V~~v~~sp--dg~~la~g~~dg~v~iwd~~~~~ 242 (475)
..+++|+++ +.++++.+..+.+ |+....+. ...+. +| ...|++++|+| +|.+||+|+.||+|+|||+..++
T Consensus 20 ~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~-gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~ 98 (325)
T d1pgua1 20 TTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDK 98 (325)
T ss_dssp CCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEG
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEe-CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCc
Confidence 456888886 6777777666555 54433332 22332 45 57899999998 67899999999999999986543
Q ss_pred ee--------EEecCCCCceEEEEeC--CCEEEEEe--CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCC-EEEE
Q 011916 243 RV--------RTFGGHQTRAGVLAWN--SRILSSGS--RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDR-ELAS 309 (475)
Q Consensus 243 ~~--------~~~~~h~~~v~~l~~~--~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~las 309 (475)
.. ..+..|.+.|.+++|+ +.+|++++ .++.+.+|+.. .+..+..+.+|...|.+++|+|++. ++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 99 ESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD-SGNSLGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp GGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT-TCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred ceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeec-ccccceeeeecccccccccccccccceEEE
Confidence 22 2345788999999994 57777665 46789999998 5677888999999999999999876 4778
Q ss_pred EeCCCcEEEEECCCCceeEEEe---ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEE
Q 011916 310 GGNDNQLLVWNQHSQQPTLRLT---EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLA 385 (475)
Q Consensus 310 g~~Dg~I~iwd~~~~~~~~~~~---~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~ 385 (475)
++.|+.|++||....+....+. .|...|.+++|+|++..++++++ .|+.|++||+++++.+..+. +...+..+.
T Consensus 178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~--~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 255 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG--SDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255 (325)
T ss_dssp EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE--TTCCEEEEETTTCCEEEECCBTTBCCCSCE
T ss_pred eecccccccccccccccceecccccCCCCccEEeeeccccceeccccc--cccceeeeeeccccccccccccccccccce
Confidence 9999999999998877666554 46778999999998766777765 89999999999999998885 444555555
Q ss_pred Ec---CCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc--eEEEEECCC-CCEEEEEeCCCCEEEEec
Q 011916 386 WS---KNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR--VLYLATSPD-GQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 386 ~s---~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~--V~~l~~spd-g~~l~s~s~Dg~I~iW~~ 451 (475)
|+ +++++|++ ++.|+.|+|||+.+++.+..+..|... +..+++.+. +.+|++++.||+|+|||+
T Consensus 256 ~s~~~~dg~~l~s--~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 256 FALSWLDSQKFAT--VGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEESSSSEEEE--EETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred eeeeccCCCEEEE--EeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 54 68889988 779999999999999999888765543 334444332 347899999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2e-30 Score=242.50 Aligned_cols=267 Identities=23% Similarity=0.397 Sum_probs=225.4
Q ss_pred CceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 169 FYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
.-|.|++|+++.+++++.|+.|+|||+.+++....+. +|.+.|++++| ++++|++|+.||.|++|++..+.......
T Consensus 16 ~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~-~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~ 92 (293)
T d1p22a2 16 KGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLI 92 (293)
T ss_dssp CCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEEC
T ss_pred CCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCEeeeec--ccceeeccccccccccccccccccccccc
Confidence 3477899987788888999999999999999988886 89999999987 67899999999999999999998888887
Q ss_pred CCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCc--cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce
Q 011916 249 GHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSD--YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP 326 (475)
Q Consensus 249 ~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~ 326 (475)
.+.............++++..++.+.+||...... ....+..|...|..+.+.+ ..+++++.|+.|++||+++++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~ 170 (293)
T d1p22a2 93 HHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEF 170 (293)
T ss_dssp CCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCE
T ss_pred ccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcE
Confidence 77777777777788999999999999999985443 3455678888998888754 5788999999999999999999
Q ss_pred eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEE
Q 011916 327 TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMV 406 (475)
Q Consensus 327 ~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~i 406 (475)
+..+.++...+..+.+++ . .+++++ .|+.|++||+++...+.......... ..+++++.+|++ |+.||.|++
T Consensus 171 ~~~~~~~~~~v~~~~~~~--~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v-~~~~~~~~~l~s--g~~dg~i~i 242 (293)
T d1p22a2 171 VRTLNGHKRGIACLQYRD--R-LVVSGS--SDNTIRLWDIECGACLRVLEGHEELV-RCIRFDNKRIVS--GAYDGKIKV 242 (293)
T ss_dssp EEEEECCSSCEEEEEEET--T-EEEEEE--TTSCEEEEETTTCCEEEEECCCSSCE-EEEECCSSEEEE--EETTSCEEE
T ss_pred EEEEcccccccccccCCC--C-eEEEec--CCCEEEEEecccceeeeeecccceee-eeccccceEEEE--EcCCCEEEE
Confidence 999999999998888865 3 455544 89999999999999988876443322 346678888888 889999999
Q ss_pred EECCC---------CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEe
Q 011916 407 WKYPS---------MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWN 450 (475)
Q Consensus 407 wd~~~---------~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~ 450 (475)
||+.. ...+..+.+|.+.|++++| ++.+|+||+.||+|+|||
T Consensus 243 wd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 243 WDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred EECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 99742 3567889999999999999 567899999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.6e-30 Score=246.70 Aligned_cols=251 Identities=17% Similarity=0.204 Sum_probs=204.8
Q ss_pred CcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-CCCCceEEEEeCC-CEEEEEeCCCcEEE
Q 011916 198 SKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-GHQTRAGVLAWNS-RILSSGSRDRNILQ 275 (475)
Q Consensus 198 ~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~~-~~l~sgs~dg~I~i 275 (475)
|++.+++. +|.+.|++++|+|+|++|++|+.||+|++||+++++.+..+. +|...|.+++|++ ..+++++.|+.+++
T Consensus 2 g~~~~~~~-GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~ 80 (299)
T d1nr0a2 2 GSIDQVRY-GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKV 80 (299)
T ss_dssp TEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEE
T ss_pred CccceEcC-CCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEE
Confidence 45556665 999999999999999999999999999999999999988875 7899999999954 45777888999999
Q ss_pred EECCCCCc--cEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEe
Q 011916 276 HDLRVSSD--YICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 276 wd~~~~~~--~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg 353 (475)
|+...... .......+...+.+++|+++++.+++++. +.+.+|+... .... .....+.+++|+|++..++ +|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~-~~i~~~~~~~--~~~~--~~~~~~~~~~~s~~~~~l~-~g 154 (299)
T d1nr0a2 81 VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY-KHIAIYSHGK--LTEV--PISYNSSCVALSNDKQFVA-VG 154 (299)
T ss_dssp ECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES-SEEEEEETTE--EEEE--ECSSCEEEEEECTTSCEEE-EE
T ss_pred eccCCcccccccccccccccccccccccccccccccccc-cccccccccc--cccc--ccccccccccccccccccc-cc
Confidence 99864321 22233456778999999999988777664 6899999543 2222 2345678899999998554 54
Q ss_pred cCCCCCeEEEEECCCCcee--eeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE---EEecCCCcceEEE
Q 011916 354 GGTADRCIRFWNTSNGHQL--NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKV---STLTGHSLRVLYL 428 (475)
Q Consensus 354 ~Gs~d~~I~iwd~~~~~~~--~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~---~~l~~h~~~V~~l 428 (475)
+ .|+.|++||+.+++.. ....+...|.+++|+|++++|++ ++.++.|++||+.++..+ ..+.+|...|+++
T Consensus 155 ~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l 230 (299)
T d1nr0a2 155 G--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA--TDQSRKVIPYSVANNFELAHTNSWTFHTAKVACV 230 (299)
T ss_dssp E--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE--EETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred c--ccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccc
Confidence 4 8999999999887654 34467889999999999999998 889999999999877654 3456799999999
Q ss_pred EECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 429 ATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 429 ~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
+|+|++.+|++|+.||.|++||+........
T Consensus 231 ~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~ 261 (299)
T d1nr0a2 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPI 261 (299)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCTTSCCE
T ss_pred cccccccceEEEcCCCEEEEEECCCCCcceE
Confidence 9999999999999999999999988765544
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=4.9e-29 Score=239.00 Aligned_cols=262 Identities=18% Similarity=0.343 Sum_probs=224.2
Q ss_pred EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECC
Q 011916 202 RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLR 279 (475)
Q Consensus 202 ~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~ 279 (475)
+.+. +|.+.|++++|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+ +.++++|+.|+.+.+|+..
T Consensus 49 ~tL~-GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~ 127 (340)
T d1tbga_ 49 RTLR-GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp EEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred EEEC-CCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence 3444 899999999999999999999999999999999999999999999999999994 6899999999999999986
Q ss_pred CCC---ccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCC
Q 011916 280 VSS---DYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT 356 (475)
Q Consensus 280 ~~~---~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs 356 (475)
... .....+.+|.......... .+..++.+..|.....++............+...+....+.+.+..++ +++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-- 203 (340)
T d1tbga_ 128 TREGNVRVSRELAGHTGYLSCCRFL-DDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV-SGA-- 203 (340)
T ss_dssp SSCSCCCEEEEECCCSSCEEEEEEE-ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE-EEE--
T ss_pred ccccccccceecccccccccccccc-cccccccccccccccccccccccccccccccceeEeeeccccccceeE-Eee--
Confidence 433 3445677787777666554 455788888899999999998887777788889999999999888554 443
Q ss_pred CCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec--CCCcceEEEEECCC
Q 011916 357 ADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT--GHSLRVLYLATSPD 433 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spd 433 (475)
.|+.|++||+++++++..+. +...|.+++|+|++++|++ |+.|+.|++||+.....+..+. .|...|.+++|+|+
T Consensus 204 ~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s--~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~ 281 (340)
T d1tbga_ 204 CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFAT--GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281 (340)
T ss_dssp TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSS
T ss_pred cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEE--EeCCCeEEEEeecccccccccccccccCceEEEEECCC
Confidence 79999999999999998875 6788999999999999998 8899999999999988877664 46778999999999
Q ss_pred CCEEEEEeCCCCEEEEecCCCCCCCCcc-cCCcccccc
Q 011916 434 GQTIVTGAGDETLRFWNVFPSLKAPALV-KDTSLWSLG 470 (475)
Q Consensus 434 g~~l~s~s~Dg~I~iW~~~~~~~~~~~~-~~~~v~s~~ 470 (475)
+++|++|+.||.|++||+..+.....+. |...|+++.
T Consensus 282 ~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~ 319 (340)
T d1tbga_ 282 GRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLG 319 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred CCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence 9999999999999999999887766654 455665543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.2e-29 Score=239.76 Aligned_cols=247 Identities=17% Similarity=0.195 Sum_probs=203.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCC--eeeEEecCCC-CceEEEEeC----CCEEEEEeCCCcEEEEECCC
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQ-VQVWDGTQC--KRVRTFGGHQ-TRAGVLAWN----SRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~-v~iwd~~~~--~~~~~~~~h~-~~v~~l~~~----~~~l~sgs~dg~I~iwd~~~ 280 (475)
...+++++|+|+|+.|++++.+.. |+.|+.... ..+..+.+|. ..|++++|+ +.+|++|+.||+|++||+..
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence 346789999999999999876543 566665433 4566777875 679999994 47999999999999999964
Q ss_pred CCc-------cEEEecCccCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEE
Q 011916 281 SSD-------YICKLAGHKSEVCGLKWSHDDRELASGGN--DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA 351 (475)
Q Consensus 281 ~~~-------~~~~~~~h~~~V~~l~~s~~~~~lasg~~--Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~ 351 (475)
... ....+..|.+.|.+++|++++++|++++. ++.+.+|+..+++.+..+.+|...|.+++|+|++..+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~ 176 (325)
T d1pgua1 97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSM 176 (325)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEE
T ss_pred CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEE
Confidence 321 12235578899999999999999988764 678999999999999999999999999999999998887
Q ss_pred EecCCCCCeEEEEECCCCceeeeec----CCCCeeEEEEcCCC-CeEEEEEecCCCeEEEEECCCCceEEEecCCCcceE
Q 011916 352 SGGGTADRCIRFWNTSNGHQLNSVD----TGSQVCNLAWSKNV-NELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVL 426 (475)
Q Consensus 352 sg~Gs~d~~I~iwd~~~~~~~~~~~----~~~~v~~l~~s~~~-~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~ 426 (475)
+++ .|+.|++||..+++....+. +...|.+++|+|++ .++++ ++.|+.|++||+.+++.+..+.+|...+.
T Consensus 177 ~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s--~~~d~~i~iwd~~~~~~~~~l~~~~~~v~ 252 (325)
T d1pgua1 177 TVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVIT--VGSDRKISCFDGKSGEFLKYIEDDQEPVQ 252 (325)
T ss_dssp EEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEE--EETTCCEEEEETTTCCEEEECCBTTBCCC
T ss_pred Eee--cccccccccccccccceecccccCCCCccEEeeeccccceeccc--cccccceeeeeeccccccccccccccccc
Confidence 776 89999999999887766653 45679999999975 55555 77899999999999999999999988876
Q ss_pred EEEEC---CCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 427 YLATS---PDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 427 ~l~~s---pdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
.+.|+ +||++|++++.|++|+|||+..++....
T Consensus 253 ~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~ 288 (325)
T d1pgua1 253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQK 288 (325)
T ss_dssp SCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred cceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEE
Confidence 66665 7899999999999999999998775544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.8e-28 Score=232.11 Aligned_cols=253 Identities=25% Similarity=0.382 Sum_probs=197.3
Q ss_pred EECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCc
Q 011916 193 WTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRN 272 (475)
Q Consensus 193 w~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~ 272 (475)
|+..+.+..+++. +|.+.|.+ +++++|++||+|+.||+|+|||+.+++++.++.+|...|.+++|++++|++|+.|+.
T Consensus 1 W~~~~~~~~~~l~-GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~~l~s~s~D~~ 78 (342)
T d2ovrb2 1 WRRGELKSPKVLK-GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRT 78 (342)
T ss_dssp HHHSCCCCCEEEE-CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEETTSC
T ss_pred CCCCCCCcCEEEC-CcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCCccccceeccc
Confidence 4444555556666 89988865 366689999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCCccEEEecCccCCEE--------------------------------------EEEEcCCCCEEEEEeCCC
Q 011916 273 ILQHDLRVSSDYICKLAGHKSEVC--------------------------------------GLKWSHDDRELASGGNDN 314 (475)
Q Consensus 273 I~iwd~~~~~~~~~~~~~h~~~V~--------------------------------------~l~~s~~~~~lasg~~Dg 314 (475)
+++|+..... .......+...+. ...+......+++++.|+
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 157 (342)
T d2ovrb2 79 LKVWNAETGE-CIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDF 157 (342)
T ss_dssp EEEEETTTTE-EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTS
T ss_pred cccccccccc-ceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCC
Confidence 9999987322 2222111111111 112233455788899999
Q ss_pred cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeE
Q 011916 315 QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 315 ~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l 393 (475)
.|++||......+..+.+|...+..+.+ ++. .+++++ .|+.|++||+..++++..+. +...+.++.++ +++|
T Consensus 158 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~l~s~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l 230 (342)
T d2ovrb2 158 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGI-HVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNIL 230 (342)
T ss_dssp CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSS-EEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEE
T ss_pred eEEEeecccceeeEEEcCcccccccccC--CCC-EEEEEe--CCCeEEEeecccceeeeEecccccceeEEecC--CCEE
Confidence 9999999999888888888887776666 455 455554 89999999999999988775 45667777765 4578
Q ss_pred EEEEecCCCeEEEEECCCCceEEEecC---CCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCC
Q 011916 394 VSTHGYSQNQIMVWKYPSMAKVSTLTG---HSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 394 ~~~~g~~dg~I~iwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
++ |+.|+.|++||+...+....+.. |...+.++.++ +.++++|+.||+|+|||+.+++....
T Consensus 231 ~s--~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~ 295 (342)
T d2ovrb2 231 VS--GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRN 295 (342)
T ss_dssp EE--EETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EE--EcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEE
Confidence 77 88999999999999988888765 55667777774 56999999999999999998876544
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.2e-28 Score=243.92 Aligned_cols=265 Identities=14% Similarity=0.197 Sum_probs=197.6
Q ss_pred CceeEEecCCCCEEEEEcCCeEEEEECCCCc-------EEEEeeCCCCCcEEEEEE------cC-CCCEEEEEeCCCeEE
Q 011916 169 FYLNLVDWSSQNVLAVGLGTCVYLWTASNSK-------VTRLCDLGPGDSVCSVQW------TR-EGSYISVGTNLGQVQ 234 (475)
Q Consensus 169 ~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~-------~~~~~~~~~~~~V~~v~~------sp-dg~~la~g~~dg~v~ 234 (475)
-.|.+++++++.+++++.|+.|+|||..+.+ ..... .+...+..+.. .. ++.++++++.||.|+
T Consensus 15 ~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~ 92 (393)
T d1sq9a_ 15 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF--VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLL 92 (393)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE--CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEE
T ss_pred CccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeee--eccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEE
Confidence 3567788888899999999999999977653 12221 33333322221 11 335788999999999
Q ss_pred EEECCCCeeeE-----Ee-----cCCCCceEEEEeC-------CCEEEEEeCCCcEEEEECCCCCcc-------------
Q 011916 235 VWDGTQCKRVR-----TF-----GGHQTRAGVLAWN-------SRILSSGSRDRNILQHDLRVSSDY------------- 284 (475)
Q Consensus 235 iwd~~~~~~~~-----~~-----~~h~~~v~~l~~~-------~~~l~sgs~dg~I~iwd~~~~~~~------------- 284 (475)
+|++....... .. ..+...+..++|. +.++++++.||.+.+|++......
T Consensus 93 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 172 (393)
T d1sq9a_ 93 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE 172 (393)
T ss_dssp EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred EEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecccee
Confidence 99865432111 11 1244566677772 368999999999999998532210
Q ss_pred ----EEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE------eccccceeEEEECCCCCcEEEEec
Q 011916 285 ----ICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL------TEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 285 ----~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~------~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
......+...+.+++|+|++ +||+|+.|++|+|||+.+++++..+ .+|...|.+++|+|++..| ++|+
T Consensus 173 ~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l-~sgs 250 (393)
T d1sq9a_ 173 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL-AIAH 250 (393)
T ss_dssp EEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEE-EEEE
T ss_pred cccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccccccee-eeec
Confidence 11122355668899999997 9999999999999999998876654 4588999999999999955 4443
Q ss_pred CCCCC---eEEEEECCCCceeeeec--------------CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q 011916 355 GTADR---CIRFWNTSNGHQLNSVD--------------TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST 417 (475)
Q Consensus 355 Gs~d~---~I~iwd~~~~~~~~~~~--------------~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~ 417 (475)
.|+ .|++||+.+++++..+. |...|++++|+|++++|++ |+.|+.|++||+.+++++.+
T Consensus 251 --~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S--~s~D~~v~vWd~~~g~~~~~ 326 (393)
T d1sq9a_ 251 --DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS--AGWDGKLRFWDVKTKERITT 326 (393)
T ss_dssp --EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEE--EETTSEEEEEETTTTEEEEE
T ss_pred --CCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEE--ECCCCEEEEEECCCCCEEEE
Confidence 564 69999999999887763 6678999999999999998 88999999999999999999
Q ss_pred ecCCCcceE----EEEECCCCCEEEEEe
Q 011916 418 LTGHSLRVL----YLATSPDGQTIVTGA 441 (475)
Q Consensus 418 l~~h~~~V~----~l~~spdg~~l~s~s 441 (475)
+++|.+.|. .++|++++..+++++
T Consensus 327 l~gH~~~v~~~~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 327 LNMHCDDIEIEEDILAVDEHGDSLAEPG 354 (393)
T ss_dssp EECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred ECCcCCcccCCccEEEECCCCCEEEEcc
Confidence 999988775 477888887766443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.1e-27 Score=225.63 Aligned_cols=259 Identities=16% Similarity=0.187 Sum_probs=202.1
Q ss_pred CCCceeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE
Q 011916 167 DDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 167 ~d~~v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~ 246 (475)
+.-.|.+++|++ +++++.|+.|++||+.++. .+|...|.+++|++++ .+++++.|++|++|++...+
T Consensus 12 H~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~---- 78 (287)
T d1pgua2 12 HNKGITALTVNP--LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE---- 78 (287)
T ss_dssp CSSCEEEEETTT--TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE----
T ss_pred CCCceEEEEECc--EEEEeCCCeEEEEECCCCC------CCCCCCEEEEEecCCC-eEEEEeeccccccccccccc----
Confidence 455789999987 9999999999999987542 3788999999998765 57899999999999865422
Q ss_pred ecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC-cEEEEECCCC
Q 011916 247 FGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN-QLLVWNQHSQ 324 (475)
Q Consensus 247 ~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg-~I~iwd~~~~ 324 (475)
....+.++++. +..++..+.++.+.+|+.. ....+..+..+ ..+. ++++++..+++++.|+ .|++|++...
T Consensus 79 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~~~~~v~~~~~~~v~~~~~~~~ 151 (287)
T d1pgua2 79 ---FGSQPKVASANNDGFTAVLTNDDDLLILQSF-TGDIIKSVRLN-SPGS--AVSLSQNYVAVGLEEGNTIQVFKLSDL 151 (287)
T ss_dssp ---CSSCEEEEEECSSSEEEEEETTSEEEEEETT-TCCEEEEEECS-SCEE--EEEECSSEEEEEETTTSCEEEEETTEE
T ss_pred ---cccceeeeeeccCCceEEEeecccceeeecc-ceeeeeecccc-ceee--eeeccCcceeeeccccceeeeeecccc
Confidence 23345666774 4566666777888999987 44555555433 3343 4566788888888775 7999999876
Q ss_pred ceeEEEe-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee--cCCCCeeEEEEcCCC----------C
Q 011916 325 QPTLRLT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV--DTGSQVCNLAWSKNV----------N 391 (475)
Q Consensus 325 ~~~~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~--~~~~~v~~l~~s~~~----------~ 391 (475)
+....+. .|...+.+++|+|++.+|++ |+ .|+.|++||+.+++..... .|...|.+++|+|.+ .
T Consensus 152 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~-g~--~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~ 228 (287)
T d1pgua2 152 EVSFDLKTPLRAKPSYISISPSETYIAA-GD--VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEED 228 (287)
T ss_dssp EEEEECSSCCSSCEEEEEECTTSSEEEE-EE--TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCC
T ss_pred ceeeeeeeccCCceeEEEeccCcccccc-cc--ccccccceeecccccccccccccccccceeeecccccccccccCCCC
Confidence 6555544 47788999999999996555 43 8999999999998876543 467889999998754 4
Q ss_pred eEEEEEecCCCeEEEEECCC-CceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEec
Q 011916 392 ELVSTHGYSQNQIMVWKYPS-MAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNV 451 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~ 451 (475)
++++ |+.|+.|++||+.+ .+.+..+.+|...|++++|++++ .|++++.|++|++|++
T Consensus 229 ~l~s--gs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 229 LVAT--GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEEE--EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred eeEe--ecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 5666 88999999999977 55677778999999999999986 6899999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.1e-27 Score=237.07 Aligned_cols=246 Identities=18% Similarity=0.268 Sum_probs=188.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe------eeEEecCCCCceEEEEe------C---CCEEEEEeCCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCK------RVRTFGGHQTRAGVLAW------N---SRILSSGSRDR 271 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~------~~~~~~~h~~~v~~l~~------~---~~~l~sgs~dg 271 (475)
+|.+.|.++++++ ++|++|+.|++|+|||..+.+ .......|...+..+.. + ..++++++.||
T Consensus 12 ~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg 89 (393)
T d1sq9a_ 12 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSG 89 (393)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTS
T ss_pred cccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCC
Confidence 8999999999864 699999999999999976543 12223345444433322 2 25788999999
Q ss_pred cEEEEECCCCCccEE----E-----ecCccCCEEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCc-----------e
Q 011916 272 NILQHDLRVSSDYIC----K-----LAGHKSEVCGLKWSHD-----DRELASGGNDNQLLVWNQHSQQ-----------P 326 (475)
Q Consensus 272 ~I~iwd~~~~~~~~~----~-----~~~h~~~V~~l~~s~~-----~~~lasg~~Dg~I~iwd~~~~~-----------~ 326 (475)
.|++|++........ . ...+...+..++|.++ +.++++++.||.+++|++.... .
T Consensus 90 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 169 (393)
T d1sq9a_ 90 DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSP 169 (393)
T ss_dssp CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCC
T ss_pred cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeecc
Confidence 999999864332111 1 1235567888888775 4689999999999999975321 0
Q ss_pred eE----E---EeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-------CCCCeeEEEEcCCCCe
Q 011916 327 TL----R---LTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-------TGSQVCNLAWSKNVNE 392 (475)
Q Consensus 327 ~~----~---~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-------~~~~v~~l~~s~~~~~ 392 (475)
.. . ...+...+.+++|+|++ ++++|+ .|+.|++||+.+++++..+. |...|.+++|+|+|++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs--~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 245 (393)
T d1sq9a_ 170 TLELQGTVESPMTPSQFATSVDISERG--LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSL 245 (393)
T ss_dssp EEEEEEEECCSSSSCCCCCEEEECTTS--EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTE
T ss_pred ceecccceecccCCCCcEEEEEECCCC--EEEEEe--CCCcEEEEeecccccccccccccccccccceEEEcccccccce
Confidence 11 1 12245668999999997 667765 89999999999998877653 5678999999999999
Q ss_pred EEEEEecCCC---eEEEEECCCCceEEEec-------------CCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 393 LVSTHGYSQN---QIMVWKYPSMAKVSTLT-------------GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 393 l~~~~g~~dg---~I~iwd~~~~~~~~~l~-------------~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
|++ |+.|+ .|++||+.+++.+..+. +|...|++|+|+||+++|+||+.|++|+|||+.++..
T Consensus 246 l~s--gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 246 LAI--AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323 (393)
T ss_dssp EEE--EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred eee--ecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence 999 66665 59999999998888774 7999999999999999999999999999999999876
Q ss_pred CCCc
Q 011916 457 APAL 460 (475)
Q Consensus 457 ~~~~ 460 (475)
..++
T Consensus 324 ~~~l 327 (393)
T d1sq9a_ 324 ITTL 327 (393)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.6e-26 Score=221.92 Aligned_cols=238 Identities=23% Similarity=0.373 Sum_probs=191.5
Q ss_pred CCCCcE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCcc
Q 011916 207 GPGDSV-CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDY 284 (475)
Q Consensus 207 ~~~~~V-~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~ 284 (475)
+|.+.| +|++| ++++||+|+.||+|+|||+.+++++.++.+|...|.+++|. +++|++|+.|+.|++|++.. ...
T Consensus 10 GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~-~~~ 86 (355)
T d1nexb2 10 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKK-GCC 86 (355)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTT-TEE
T ss_pred CcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccc-ccc
Confidence 787765 66655 68899999999999999999999999999999999999994 68999999999999999984 444
Q ss_pred EEEecCc--cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEE-----------------------EeccccceeE
Q 011916 285 ICKLAGH--KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLR-----------------------LTEHTAAVKA 339 (475)
Q Consensus 285 ~~~~~~h--~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~-----------------------~~~h~~~v~~ 339 (475)
......+ ...+....+++++.++++++.|+.|++||+.....+.. ...|...+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~- 165 (355)
T d1nexb2 87 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR- 165 (355)
T ss_dssp EEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEE-
T ss_pred ccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccc-
Confidence 4333333 33445667788999999999999999999986543322 122333333
Q ss_pred EEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 340 IAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 340 l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
.+.+++. +++++. .|+.|++||+.+++.+.... ....+.++.|++++..+++ +..|+.|++||+.++..+..+
T Consensus 166 -~~~~~~~-~~~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~i~d~~~~~~~~~~ 239 (355)
T d1nexb2 166 -TVSGHGN-IVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCIS--ASMDTTIRIWDLENGELMYTL 239 (355)
T ss_dssp -EEEEETT-EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEE--EETTSCEEEEETTTCCEEEEE
T ss_pred -ccccccc-eeeeec--ccceeeeeecccccceeeeeccccccccccccccceeeec--ccccceEEeeecccccccccc
Confidence 3344555 444444 79999999999999887775 5678899999999999998 889999999999999999999
Q ss_pred cCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCC
Q 011916 419 TGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLK 456 (475)
Q Consensus 419 ~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~ 456 (475)
.+|...|.+++|+ +++|++++.||+|++||+....+
T Consensus 240 ~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~ 275 (355)
T d1nexb2 240 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR 275 (355)
T ss_dssp CCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccccccccc--cceeeeeecccccccccccccce
Confidence 9999999999996 46899999999999999986653
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.1e-27 Score=228.32 Aligned_cols=281 Identities=13% Similarity=0.124 Sum_probs=209.7
Q ss_pred ceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEE--EeeCCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCeee
Q 011916 170 YLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTR--LCDLGPGDSVCSVQWTRE-GSYISVGTNLGQVQVWDGTQCKRV 244 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~--~~~~~~~~~V~~v~~spd-g~~la~g~~dg~v~iwd~~~~~~~ 244 (475)
.|++|+|+|+ + |++++.|+.|+|||+.++.... ....+|...|.+++|+++ +.+|++|+.||.|++|++......
T Consensus 13 ~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~ 92 (342)
T d1yfqa_ 13 YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF 92 (342)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE
T ss_pred CEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccc
Confidence 6899999986 4 5566679999999997654322 222368999999999986 468999999999999999988777
Q ss_pred EEecCCCCceEEEE---eCCCEEEEEeCCCcEEEEECCCCCccE---EEecCc--cCCEEEEEEcCCCCEEEEEeCCCcE
Q 011916 245 RTFGGHQTRAGVLA---WNSRILSSGSRDRNILQHDLRVSSDYI---CKLAGH--KSEVCGLKWSHDDRELASGGNDNQL 316 (475)
Q Consensus 245 ~~~~~h~~~v~~l~---~~~~~l~sgs~dg~I~iwd~~~~~~~~---~~~~~h--~~~V~~l~~s~~~~~lasg~~Dg~I 316 (475)
.....+...+.... .++..+++++.++.+.+||++...... .....+ ......+.+.+++..+++++.|+.|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i 172 (342)
T d1yfqa_ 93 QALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQV 172 (342)
T ss_dssp EECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEE
T ss_pred ccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcE
Confidence 77665554433222 267899999999999999987433222 222222 2234556677788899999999999
Q ss_pred EEEECCCCceeE---EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee----------------ecC
Q 011916 317 LVWNQHSQQPTL---RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS----------------VDT 377 (475)
Q Consensus 317 ~iwd~~~~~~~~---~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~----------------~~~ 377 (475)
++||+....... ....+...+.+..+.+.....+++++ .|+.+.+|+......... ..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (342)
T d1yfqa_ 173 QWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL 250 (342)
T ss_dssp EEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS
T ss_pred EEEecccCcccceeeeecccccceeeeEeecCCCCEEEeec--CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcc
Confidence 999998765432 23345566777777776665666665 899999999865432111 123
Q ss_pred CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 378 GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
...+.+++|+|++++|++ |+.||.|++||+.+++.+.++..+. .+..++|+|+|++|++++.|+++++|......
T Consensus 251 ~~~v~~l~~sp~~~~las--g~~Dg~v~vWD~~~~~~l~~~~~~~-~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~~ 325 (342)
T d1yfqa_ 251 AYPVNSIEFSPRHKFLYT--AGSDGIISCWNLQTRKKIKNFAKFN-EDSVVKIACSDNILCLATSDDTFKTNAAIDQT 325 (342)
T ss_dssp CCCEEEEEECTTTCCEEE--EETTSCEEEEETTTTEEEEECCCCS-SSEEEEEEECSSEEEEEEECTHHHHCSSSCTT
T ss_pred cccceeEEecCCccEEEE--ECCCCEEEEEECCCCcEEEEecCCC-CCEEEEEEeCCCEEEEEEcCCcEEEeeeeCCC
Confidence 456899999999999998 8899999999999999998886432 34457788899999999999999998775543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=2.2e-27 Score=229.61 Aligned_cols=274 Identities=10% Similarity=0.029 Sum_probs=211.7
Q ss_pred EecCC-C-CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEECCCCeeeEEecC
Q 011916 174 VDWSS-Q-NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG--QVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 174 l~ws~-~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg--~v~iwd~~~~~~~~~~~~ 249 (475)
-+||| + +++|.+.++.|++|+..++...++ .|...|.+++|+|||++|++++.+. .|++||+++++.. .+..
T Consensus 8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~---~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~ 83 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV---PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEE 83 (360)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBEEEC---SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCC
T ss_pred ccccCCCCCEEEEEECCeEEEEECCCCcEEEc---cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeC
Confidence 56787 4 788888899999999999887664 6889999999999999998877653 7999999877654 5678
Q ss_pred CCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe----------CCCcEE
Q 011916 250 HQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG----------NDNQLL 317 (475)
Q Consensus 250 h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~----------~Dg~I~ 317 (475)
|...|.+++| ++++|++++.++.+.+|++. .......+..|...+.+++|+|+|++|+.+. .++.++
T Consensus 84 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~ 162 (360)
T d1k32a3 84 NLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE-TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH 162 (360)
T ss_dssp CCCSEEEEEECTTSSEEEEEETTSEEEEEETT-TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred CCceEEeeeecccccccceecccccccccccc-ccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence 9999999999 46899999999999999998 5666777888999999999999999998654 345699
Q ss_pred EEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee-------eeec--------------
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL-------NSVD-------------- 376 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~-------~~~~-------------- 376 (475)
+||+.+++.. .+..+...+..++|+|+|+.|++.+ .++.+.+||....... ..+.
T Consensus 163 v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 238 (360)
T d1k32a3 163 VYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLS---YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR 238 (360)
T ss_dssp EEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEE---SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred eeccccCcee-eecccccccccccccCCCCEEEEEe---CCCceEcccccccceeeccccceEEEecccCccccceECCC
Confidence 9999987654 4456778889999999999777654 6899999987543221 1110
Q ss_pred -----------------------CCCCeeEEEEcCCCCeEEE-----------EEecCCCeEEEEECCCCceEEEecCCC
Q 011916 377 -----------------------TGSQVCNLAWSKNVNELVS-----------THGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 377 -----------------------~~~~v~~l~~s~~~~~l~~-----------~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
..+....+...+++...+. +.+..++.|++||+.+++.. .|.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~ 314 (360)
T d1k32a3 239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVK 314 (360)
T ss_dssp GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEE
T ss_pred cCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----Eec
Confidence 0011223333333222221 11445788999999887542 345
Q ss_pred cceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 423 LRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 423 ~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
+.|..++|+|||++|++++.||.|++||+..++....+
T Consensus 315 ~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 315 NNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352 (360)
T ss_dssp EEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred CCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 67999999999999999999999999999988776654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.7e-27 Score=226.91 Aligned_cols=250 Identities=13% Similarity=0.093 Sum_probs=184.9
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeee---EEecCCCCceEEEEeC---CCEEEEEeCCCcEEEEECCC
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRV---RTFGGHQTRAGVLAWN---SRILSSGSRDRNILQHDLRV 280 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~---~~~~~h~~~v~~l~~~---~~~l~sgs~dg~I~iwd~~~ 280 (475)
+|.+.|++|+|+|++++||+|+.||+|+|||+.++... ....+|...|.+++|. +.+|++|+.||.|++|++..
T Consensus 9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~ 88 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSS
T ss_pred CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeeccc
Confidence 88999999999999999999999999999998765432 3334799999999994 45899999999999999985
Q ss_pred CCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE----ecc--ccceeEEEECCCCCcEEEEec
Q 011916 281 SSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL----TEH--TAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 281 ~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~----~~h--~~~v~~l~~sp~~~~ll~sg~ 354 (475)
..........+........+.+++..+++++.|+.+++||++........ ..+ ......+.+.+.+..++. ++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 167 (342)
T d1yfqa_ 89 SPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV-GM 167 (342)
T ss_dssp SSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE-EE
T ss_pred ccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee-ec
Confidence 54444444444455556667778889999999999999998754332222 111 223445666777775554 33
Q ss_pred CCCCCeEEEEECCCCceeeee----cCCCCeeEEEEcC-CCCeEEEEEecCCCeEEEEECCCCceE------E-------
Q 011916 355 GTADRCIRFWNTSNGHQLNSV----DTGSQVCNLAWSK-NVNELVSTHGYSQNQIMVWKYPSMAKV------S------- 416 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~~----~~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~~~~------~------- 416 (475)
.|+.|++||+......... .....+....+.+ ++..+++ +..+|.+.+|++...... .
T Consensus 168 --~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~ 243 (342)
T d1yfqa_ 168 --NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC--SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243 (342)
T ss_dssp --STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEE--EETTSEEEEEECCTTCCSTTCTTCEEEECCCC
T ss_pred --CCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEe--ecCCCeEEEEEecCCcceeeccccceeeeeee
Confidence 7999999999877654332 3344566666655 4555555 788999999997543211 1
Q ss_pred --EecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 417 --TLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 417 --~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
...+|...|++++|+|++.+|+||+.||.|+|||+..+.+...+.
T Consensus 244 ~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~ 290 (342)
T d1yfqa_ 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp CTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred ccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec
Confidence 113467789999999999999999999999999999887665543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.4e-25 Score=209.15 Aligned_cols=233 Identities=24% Similarity=0.429 Sum_probs=191.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 207 GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 207 ~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
+|...|+|++| ||++||+|+.||+|+|||+.+++++.++.+|...|.+++|++++|++|+.|+.|++|++.. +....
T Consensus 13 ~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~D~~i~~~~~~~-~~~~~ 89 (293)
T d1p22a2 13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT-GEMLN 89 (293)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS-CCEEE
T ss_pred CCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeeccccccccccccccc-ccccc
Confidence 66788998754 7999999999999999999999999999999999999999999999999999999999984 44444
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCce---eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQP---TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~---~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
....+..... .+......++++..++.+.+||...... ...+..|...+..+.+.+. .+.+++ .|+.|++
T Consensus 90 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s--~d~~i~~ 162 (293)
T d1p22a2 90 TLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSAS--GDRTIKV 162 (293)
T ss_dssp EECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEE--TTSEEEE
T ss_pred cccccccccc--cccccccceeecccccceeEeeccccccccccccccccccccccceeccc---cccccc--CCCceee
Confidence 4444444333 3445667899999999999999987653 3455668888888888765 344443 7999999
Q ss_pred EECCCCceeeeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC
Q 011916 364 WNTSNGHQLNSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 364 wd~~~~~~~~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~ 442 (475)
||+.+++.+..+. +...+..+.++ +..+++ +..||.|++||+.+...+....+|...|.. +++++.+|++++.
T Consensus 163 ~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~ 236 (293)
T d1p22a2 163 WNTSTCEFVRTLNGHKRGIACLQYR--DRLVVS--GSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAY 236 (293)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEE--TTEEEE--EETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEET
T ss_pred ecCCCCcEEEEEcccccccccccCC--CCeEEE--ecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcC
Confidence 9999999988875 44556666665 567777 889999999999999999999999988875 4567889999999
Q ss_pred CCCEEEEecCCCC
Q 011916 443 DETLRFWNVFPSL 455 (475)
Q Consensus 443 Dg~I~iW~~~~~~ 455 (475)
||.|++||+....
T Consensus 237 dg~i~iwd~~~~~ 249 (293)
T d1p22a2 237 DGKIKVWDLVAAL 249 (293)
T ss_dssp TSCEEEEEHHHHT
T ss_pred CCEEEEEECCCCc
Confidence 9999999986544
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.95 E-value=2.7e-24 Score=202.51 Aligned_cols=271 Identities=13% Similarity=0.125 Sum_probs=220.2
Q ss_pred EEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC
Q 011916 182 LAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN 260 (475)
Q Consensus 182 la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~ 260 (475)
++.+.++.|.+||++++++++.+.. ...+..++|+|||++|+ ++..++.|.+||+.+++.+..+..+.. +..++|+
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~--g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~ 82 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVS 82 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEEC
T ss_pred EEECCCCEEEEEECCCCeEEEEEEC--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccc
Confidence 3445689999999999999988864 35688999999999885 556789999999999999999887654 5677774
Q ss_pred --CC-EEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEE-EeCCCcEEEEECCCCceeEEEeccccc
Q 011916 261 --SR-ILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELAS-GGNDNQLLVWNQHSQQPTLRLTEHTAA 336 (475)
Q Consensus 261 --~~-~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~las-g~~Dg~I~iwd~~~~~~~~~~~~h~~~ 336 (475)
+. .++++..++.+.+|+.. .......+.. ...+.++.|+|++..++. +..++.+.+|+..+...+..+.. ...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 159 (301)
T d1l0qa2 83 PDGKQVYVTNMASSTLSVIDTT-SNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRS 159 (301)
T ss_dssp TTSSEEEEEETTTTEEEEEETT-TTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSS
T ss_pred cccccccccccccceeeecccc-cceeeeeccc-cccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCC
Confidence 44 55666778899999997 4555555554 456788999999997755 55678899999999988877764 455
Q ss_pred eeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEe-cCCCeEEEEECCCCceE
Q 011916 337 VKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHG-YSQNQIMVWKYPSMAKV 415 (475)
Q Consensus 337 v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g-~~dg~I~iwd~~~~~~~ 415 (475)
+..++++|++..++++.. .++.+.+|+....+....+.....+..++|+++++.++++.. ..++.|.+||..+++.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~ 237 (301)
T d1l0qa2 160 PKGIAVTPDGTKVYVANF--DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT 237 (301)
T ss_dssp EEEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred ceEEEeeccccceeeecc--cccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEE
Confidence 789999999998888765 678899999999888888888888999999999999877432 34578999999999998
Q ss_pred EEecCCCcceEEEEECCCCCEE-EEEeCCCCEEEEecCCCCCCCCcc
Q 011916 416 STLTGHSLRVLYLATSPDGQTI-VTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 416 ~~l~~h~~~V~~l~~spdg~~l-~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
..+..+ ..+.+++|+|||++| ++++.|++|++||+.+++....+.
T Consensus 238 ~~~~~~-~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 238 ARIPVG-PDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred EEEcCC-CCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 888754 468999999999987 577789999999999887665543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=3.8e-25 Score=207.97 Aligned_cols=245 Identities=14% Similarity=0.139 Sum_probs=191.8
Q ss_pred cEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEE
Q 011916 199 KVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHD 277 (475)
Q Consensus 199 ~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd 277 (475)
+.++.+. +|.+.|++++|+| |++|+.||+|++||+.++ ..+|...|.++++. +..+++++.|++|++|+
T Consensus 4 ~~i~~l~-gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~ 73 (287)
T d1pgua2 4 EVLKTIS-GHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQEYSSISWDDTLKVNG 73 (287)
T ss_dssp EEEEEEC-CCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTTCCEEEETTTEEEETT
T ss_pred ceeEEEC-CCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCCeEEEEeecccccccc
Confidence 4556665 8999999999987 999999999999998764 35899999999995 57889999999999999
Q ss_pred CCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 278 LRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 278 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
+.. ..+...+..+.+++++..++++ .++.+.+|+..+++.+..+..+ ..+ .++++++..+++.+. .
T Consensus 74 ~~~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~v~~~--~ 139 (287)
T d1pgua2 74 ITK--------HEFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-SPG--SAVSLSQNYVAVGLE--E 139 (287)
T ss_dssp EEE--------EECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-SCE--EEEEECSSEEEEEET--T
T ss_pred ccc--------cccccceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-cee--eeeeccCcceeeecc--c
Confidence 862 1234567888999888666665 4567899999998887776543 333 456667776666543 5
Q ss_pred CCeEEEEECCCCceeeeec--CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEE-EecCCCcceEEEEECCC-
Q 011916 358 DRCIRFWNTSNGHQLNSVD--TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVS-TLTGHSLRVLYLATSPD- 433 (475)
Q Consensus 358 d~~I~iwd~~~~~~~~~~~--~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~-~l~~h~~~V~~l~~spd- 433 (475)
++.+++|++...+....+. +...+.+++|+|++.+|++ |+.+|.|++||+.+++... .+.+|...|.+++|+|+
T Consensus 140 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~ 217 (287)
T d1pgua2 140 GNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA--GDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE 217 (287)
T ss_dssp TSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEE--EETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC
T ss_pred cceeeeeeccccceeeeeeeccCCceeEEEeccCcccccc--ccccccccceeecccccccccccccccccceeeecccc
Confidence 5689999998766655553 5578999999999999999 8899999999999988765 35789999999999875
Q ss_pred ---------CCEEEEEeCCCCEEEEecCCCCCCCC-c-ccCCccccc
Q 011916 434 ---------GQTIVTGAGDETLRFWNVFPSLKAPA-L-VKDTSLWSL 469 (475)
Q Consensus 434 ---------g~~l~s~s~Dg~I~iW~~~~~~~~~~-~-~~~~~v~s~ 469 (475)
+.+|++|+.|++|+||++......-. . .+...+.++
T Consensus 218 ~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v 264 (287)
T d1pgua2 218 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL 264 (287)
T ss_dssp ------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEE
T ss_pred cccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEE
Confidence 46899999999999999976443322 2 244455544
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.91 E-value=2e-22 Score=194.37 Aligned_cols=249 Identities=10% Similarity=0.056 Sum_probs=187.3
Q ss_pred CCceeEEecCCCC--EEEEEcCC--eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee
Q 011916 168 DFYLNLVDWSSQN--VLAVGLGT--CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR 243 (475)
Q Consensus 168 d~~v~~l~ws~~~--~la~~~~~--~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~ 243 (475)
...+.+++|+|+. +++++.+. .|++||..+++..++. .|...|.+++|+|+|++|++++.++.+.+|++.+++.
T Consensus 42 ~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 119 (360)
T d1k32a3 42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119 (360)
T ss_dssp CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee--CCCceEEeeeecccccccceeccccccccccccccce
Confidence 3457889999983 44555543 7999999999877654 7889999999999999999999999999999999999
Q ss_pred eEEecCCCCceEEEEe--CCCEEEEEe----------CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe
Q 011916 244 VRTFGGHQTRAGVLAW--NSRILSSGS----------RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG 311 (475)
Q Consensus 244 ~~~~~~h~~~v~~l~~--~~~~l~sgs----------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~ 311 (475)
...+..|...+.+++| ++++|+.+. .++.+++||+.. + ....+..|...+..+.|+|+|+.|++++
T Consensus 120 ~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~-~-~~~~~~~~~~~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 120 TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-R-KIFAATTENSHDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-T-EEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred eeeeecccccccchhhccceeeeeeeccccccceeeccccceeeecccc-C-ceeeecccccccccccccCCCCEEEEEe
Confidence 9999999999999999 467887543 345689999973 3 3455666778899999999999999999
Q ss_pred CCCcEEEEECCCCce-------eEEEecc------------------------------------ccceeEEEECCCCCc
Q 011916 312 NDNQLLVWNQHSQQP-------TLRLTEH------------------------------------TAAVKAIAWSPHQSS 348 (475)
Q Consensus 312 ~Dg~I~iwd~~~~~~-------~~~~~~h------------------------------------~~~v~~l~~sp~~~~ 348 (475)
.|+.+.+||...... ...+..| .+....+...+++..
T Consensus 198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (360)
T d1k32a3 198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL 277 (360)
T ss_dssp SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEE
T ss_pred CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCce
Confidence 999999998654321 1111111 112223333333221
Q ss_pred EEEE----------ecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe
Q 011916 349 LLAS----------GGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 349 ll~s----------g~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l 418 (475)
.+.. .++..++.|++||+.+++.... .+.|..++|+|||++|++ +..||.|++||+..++...++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~---~~~v~~~~~SpDG~~l~~--~~~Dg~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV---KNNLTDLRLSADRKTVMV--RKDDGKIYTFPLEKPEDERTV 352 (360)
T ss_dssp EEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE---EEEEEEEEECTTSCEEEE--EETTSCEEEEESSCTTSCEEC
T ss_pred EEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe---cCCcCEEEECCCCCEEEE--EECCCeEEEEECCCCCcceEE
Confidence 1111 1133688999999998875433 345899999999999999 788999999999999888877
Q ss_pred cCCCcce
Q 011916 419 TGHSLRV 425 (475)
Q Consensus 419 ~~h~~~V 425 (475)
..+..++
T Consensus 353 ~~d~~~~ 359 (360)
T d1k32a3 353 ETDKRPL 359 (360)
T ss_dssp CCCSSCE
T ss_pred Eeccccc
Confidence 6665543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=3.5e-22 Score=190.52 Aligned_cols=271 Identities=10% Similarity=0.033 Sum_probs=204.6
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCC-CCCcEEEEEEcCCCCEEE-EEeCCCeEEEEECCCCeeeEEecCCCCc----
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLG-PGDSVCSVQWTREGSYIS-VGTNLGQVQVWDGTQCKRVRTFGGHQTR---- 253 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~-~~~~V~~v~~spdg~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~~~---- 253 (475)
.+++++.++.|++||+.+++++..+... +...+.+++|+|||++++ +++.++.|.+||+.+++.+..+..+...
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~ 82 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK 82 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence 4778888999999999999999888764 346688999999999875 5677899999999999999888765432
Q ss_pred -eEEEEe--CCCEEEEEe------------CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEE
Q 011916 254 -AGVLAW--NSRILSSGS------------RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLV 318 (475)
Q Consensus 254 -v~~l~~--~~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~i 318 (475)
+..+++ +++.++++. .+..+.+||.. .......+. +...+.+++|+++|+++++++. .+.+
T Consensus 83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~~ 158 (337)
T d1pbyb_ 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAFE-APRQITMLAWARDGSKLYGLGR--DLHV 158 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEEE-CCSSCCCEEECTTSSCEEEESS--SEEE
T ss_pred ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeecccc-CCeEEEecc-ccCCceEEEEcCCCCEEEEEcC--Ccce
Confidence 335566 467777665 46788899998 455555554 4456889999999999999875 4788
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEE-------------Eec--------CCCCCeEEEEECCCCceeeee--
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLA-------------SGG--------GTADRCIRFWNTSNGHQLNSV-- 375 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~-------------sg~--------Gs~d~~I~iwd~~~~~~~~~~-- 375 (475)
||..+++....+..+.. .....+.|++..+.. ... +..++.+.+|+..++......
T Consensus 159 ~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (337)
T d1pbyb_ 159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred eeeecCcEEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEec
Confidence 99999887777654322 112222232221111 000 123567999999988765543
Q ss_pred cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCC
Q 011916 376 DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 376 ~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
.+...+..+.+++++..++. + ++.|++||+.+++.+..+. +...+.+++|+|||++|++++.|++|++||+.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~--~--~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~ 312 (337)
T d1pbyb_ 238 IMDVFYFSTAVNPAKTRAFG--A--YNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEE--E--ESEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred CCCcceEEEEecccceEEEE--c--cccEEEEECCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 45677888999999999887 3 5889999999999998886 56678999999999999999999999999999887
Q ss_pred CCCCc
Q 011916 456 KAPAL 460 (475)
Q Consensus 456 ~~~~~ 460 (475)
....+
T Consensus 313 ~v~~i 317 (337)
T d1pbyb_ 313 KKGQV 317 (337)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 66553
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=6.8e-22 Score=197.22 Aligned_cols=271 Identities=11% Similarity=0.109 Sum_probs=199.8
Q ss_pred EEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--ec---CCCCceEEEE
Q 011916 184 VGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT--FG---GHQTRAGVLA 258 (475)
Q Consensus 184 ~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~--~~---~h~~~v~~l~ 258 (475)
...++.|.|||..+++++..+.. ...+..++|+|||++|++++.||+|++||+.+++.... +. +|...+.+++
T Consensus 38 ~~~dg~v~vwD~~t~~~~~~l~~--g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~ 115 (426)
T d1hzua2 38 LRDAGQIALVDGDSKKIVKVIDT--GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKF 115 (426)
T ss_dssp ETTTTEEEEEETTTCSEEEEEEC--CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCS
T ss_pred EcCCCEEEEEECCCCcEEEEEeC--CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeee
Confidence 34589999999999999998864 35699999999999999999999999999998875433 22 4555556666
Q ss_pred e--CCCEE-EEEeCCCcEEEEECCCCCccEEEecCcc-----------CCEEEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 011916 259 W--NSRIL-SSGSRDRNILQHDLRVSSDYICKLAGHK-----------SEVCGLKWSHDDRELASGGN-DNQLLVWNQHS 323 (475)
Q Consensus 259 ~--~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~-----------~~V~~l~~s~~~~~lasg~~-Dg~I~iwd~~~ 323 (475)
| +|++| +++..++.+.+||.. ..........|. .....+.+++++..++.... .+.+.+++...
T Consensus 116 ~spDG~~l~v~~~~~~~v~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~ 194 (426)
T d1hzua2 116 KGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 194 (426)
T ss_dssp TTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSS
T ss_pred ecCCCCEEEEeecCCCeEEEEcCC-ccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecc
Confidence 6 56765 555689999999998 455555554443 33455666676666655443 34566666655
Q ss_pred Ccee-EEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeeEEEEcCCC-CeEEEEEe
Q 011916 324 QQPT-LRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNV-NELVSTHG 398 (475)
Q Consensus 324 ~~~~-~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~-~~l~~~~g 398 (475)
...+ .....+...+..++|+|++++++++.. .+..+.+++..+++.+.....+ .......+...+ ..+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (426)
T d1hzua2 195 IDNLTVTSIGAAPFLADGGWDSSHRYFMTAAN--NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272 (426)
T ss_dssp SSSCEEEEEECCSSEEEEEECTTSCEEEEEET--TCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred ccceeeEEeccCCccEeeeECCCCcEEEeeee--cccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence 4432 233457788899999999998888875 7899999999999988877533 223334443333 33333335
Q ss_pred cCCCeEEEEECCC-------CceEEEecCCCcceEEEEECCCCCEEEE-------EeCCCCEEEEecCCCCCCCC
Q 011916 399 YSQNQIMVWKYPS-------MAKVSTLTGHSLRVLYLATSPDGQTIVT-------GAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 399 ~~dg~I~iwd~~~-------~~~~~~l~~h~~~V~~l~~spdg~~l~s-------~s~Dg~I~iW~~~~~~~~~~ 459 (475)
..++.+.+|+... ++....+.+|...+..++|+|||++|++ ++.|++|+|||+.+++....
T Consensus 273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~ 347 (426)
T d1hzua2 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 347 (426)
T ss_dssp TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeE
Confidence 6788898888654 4778899999999999999999999994 55688999999998876654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=2.4e-21 Score=193.75 Aligned_cols=271 Identities=12% Similarity=0.051 Sum_probs=192.7
Q ss_pred EEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCee--eEEec---CCCCceEE
Q 011916 182 LAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKR--VRTFG---GHQTRAGV 256 (475)
Q Consensus 182 la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~--~~~~~---~h~~~v~~ 256 (475)
++...++.|.|||..+++++..+..+ ..+..++|+|||++|++++.||.|.+||+.+++. +..+. +|.+.+.+
T Consensus 36 v~~~d~g~v~v~D~~t~~v~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s 113 (432)
T d1qksa2 36 VTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113 (432)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEEC
T ss_pred EEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEe
Confidence 44555899999999999999998743 4699999999999999999999999999988763 33332 44455555
Q ss_pred EEe--CCCEE-EEEeCCCcEEEEECCCCCccEEEecC-----------ccCCEEEEEEcCCCCEEE-EEeCCCcEEEEEC
Q 011916 257 LAW--NSRIL-SSGSRDRNILQHDLRVSSDYICKLAG-----------HKSEVCGLKWSHDDRELA-SGGNDNQLLVWNQ 321 (475)
Q Consensus 257 l~~--~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~-----------h~~~V~~l~~s~~~~~la-sg~~Dg~I~iwd~ 321 (475)
..| +|++| +++..++.|.+||.. ..+.+..+.. +......+.+++++..++ +...++.|.+||.
T Consensus 114 ~~~SpDG~~l~vs~~~~~~v~i~d~~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~ 192 (432)
T d1qksa2 114 KMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192 (432)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred cccCCCCCEEEEEcCCCCeEEEEeCc-cccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEc
Confidence 555 57765 778889999999998 5555555443 345567889999998764 5566799999999
Q ss_pred CCCceeEEEe-ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC----------------------
Q 011916 322 HSQQPTLRLT-EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG---------------------- 378 (475)
Q Consensus 322 ~~~~~~~~~~-~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~---------------------- 378 (475)
.+.+...... .+...+..++|+|+|+++++++. .++.+.++|..+++.+..+.++
T Consensus 193 ~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~--~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~ 270 (432)
T d1qksa2 193 TDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN--ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 270 (432)
T ss_dssp TCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG--GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEE
T ss_pred cCCCcceEEEEcccCccccceECCCCCEEEEecc--ccceEEEeecccceEEEEeccCccccccCcccceecCCCCceec
Confidence 8877544333 35567889999999998888875 7888999998876554332110
Q ss_pred -----------------------CCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC-----------------------
Q 011916 379 -----------------------SQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----------------------- 412 (475)
Q Consensus 379 -----------------------~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----------------------- 412 (475)
..+....+++++..+++ +..++..++|+..+.
T Consensus 271 ~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~--~s~p~~~~lw~~~~~~~~~~~~~sv~vpDg~~la~~s~ 348 (432)
T d1qksa2 271 TSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFI--KTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS 348 (432)
T ss_dssp EEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCE--ECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred ccccCCceEEecccccccccccccEEEEEEEcCCCCeEEE--EecCCccceeecccCCCCCCeeeEEEEEechhhccccc
Confidence 12444556666666655 444555555543211
Q ss_pred -ceEE--------EecCCCcceEEEEECCCCCEEEEEe-----CCCCEEEEecCCCCCCCC
Q 011916 413 -AKVS--------TLTGHSLRVLYLATSPDGQTIVTGA-----GDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 413 -~~~~--------~l~~h~~~V~~l~~spdg~~l~s~s-----~Dg~I~iW~~~~~~~~~~ 459 (475)
..+. .+..|..+|.+++|||||++|+.+. .+|.|+|||-.+.+....
T Consensus 349 d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~ 409 (432)
T d1qksa2 349 DPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV 409 (432)
T ss_dssp CCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred CCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEeE
Confidence 0011 1235677899999999999886553 368899999988876443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.88 E-value=6.4e-21 Score=182.38 Aligned_cols=279 Identities=9% Similarity=0.003 Sum_probs=204.4
Q ss_pred EecCCC--CEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEEecCC
Q 011916 174 VDWSSQ--NVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV-GTNLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 174 l~ws~~--~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~-g~~dg~v~iwd~~~~~~~~~~~~h 250 (475)
++++++ .+++++.++.|.+||+.++++...+.+.+...+.+++|+|||+++++ +..++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 355665 46666779999999999999999888777778899999999998755 557899999999999998877643
Q ss_pred CC------ceEEEEe--CCCEEEEEe------------CCCcEEEEECCCCCccEEEec--CccCCEEEEEEcCCCCEEE
Q 011916 251 QT------RAGVLAW--NSRILSSGS------------RDRNILQHDLRVSSDYICKLA--GHKSEVCGLKWSHDDRELA 308 (475)
Q Consensus 251 ~~------~v~~l~~--~~~~l~sgs------------~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~la 308 (475)
.. .+..+++ +|+++++++ .++.+.+||... ......+. .....+..+.+++++..++
T Consensus 82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTAD-GLEAKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGG-GGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccc-ceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence 22 2345666 567776654 467888898873 22222211 1233456667777777665
Q ss_pred EEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEec-----------------------CCCCCeEEEEE
Q 011916 309 SGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG-----------------------GTADRCIRFWN 365 (475)
Q Consensus 309 sg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~-----------------------Gs~d~~I~iwd 365 (475)
++ +.+.+|++.+++.+..+..+ .....+.++|++..+++.+. +..+..+.+||
T Consensus 161 ~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (346)
T d1jmxb_ 161 AG---PDIYKMDVKTGKYTVALPLR-NWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD 236 (346)
T ss_dssp ES---SSEEEECTTTCCEEEEECST-TCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred eC---CcceEEEccCCCEEEEEecC-CCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence 43 56899999998888777543 33455566666654433221 11345678888
Q ss_pred CCCCceeeee--cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCC
Q 011916 366 TSNGHQLNSV--DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGD 443 (475)
Q Consensus 366 ~~~~~~~~~~--~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~D 443 (475)
+.++...... .+...+..+.+++++..++.. ..+.|.+||..+++.+..+. +...+.+++|+|||++|++++.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d 312 (346)
T d1jmxb_ 237 LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYG---VLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTF 312 (346)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECSSCTTEEEE---EESEEEEEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBS
T ss_pred CCCCceEEEEeecccceeEEEEEeCCCCEEEEe---cCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCC
Confidence 8888766554 456678899999999988773 35689999999999888776 44579999999999999999999
Q ss_pred CCEEEEecCCCCCCCCcc
Q 011916 444 ETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 444 g~I~iW~~~~~~~~~~~~ 461 (475)
+.|++||+.+.+....+.
T Consensus 313 ~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 313 NDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp SEEEEEETTTTEEEEEEE
T ss_pred CcEEEEECccCCEEEEEE
Confidence 999999999887766543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.88 E-value=6e-21 Score=190.29 Aligned_cols=290 Identities=11% Similarity=0.107 Sum_probs=199.9
Q ss_pred ceeEEecCCC-C-EEEEEcCCeEEEEECCCCcEEEEeeC----CCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCe
Q 011916 170 YLNLVDWSSQ-N-VLAVGLGTCVYLWTASNSKVTRLCDL----GPGDSVCSVQWTREGSYISVG-TNLGQVQVWDGTQCK 242 (475)
Q Consensus 170 ~v~~l~ws~~-~-~la~~~~~~V~lw~~~~~~~~~~~~~----~~~~~V~~v~~spdg~~la~g-~~dg~v~iwd~~~~~ 242 (475)
.+..++|||+ + +++++.|+.|++||+.+++.....++ +|...+.+++|+|||++|+++ ..++.+.+||..+++
T Consensus 63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~ 142 (426)
T d1hzua2 63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 142 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc
Confidence 3678999997 4 45556689999999999876544433 344556677788999987655 478999999999999
Q ss_pred eeEEecCCCCceEEEEe--CCC-EEEEEeCC-----------CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEE
Q 011916 243 RVRTFGGHQTRAGVLAW--NSR-ILSSGSRD-----------RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELA 308 (475)
Q Consensus 243 ~~~~~~~h~~~v~~l~~--~~~-~l~sgs~d-----------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~la 308 (475)
.+..+..|...+....+ ++. ..+.++.| +.+.+++.............+...+..+.|+|++++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 222 (426)
T d1hzua2 143 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFM 222 (426)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEE
T ss_pred eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEE
Confidence 88887766554433333 221 22333333 44444444433333444556778899999999999888
Q ss_pred EEe-CCCcEEEEECCCCceeEEEec--cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCC-------ceeeeec-C
Q 011916 309 SGG-NDNQLLVWNQHSQQPTLRLTE--HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNG-------HQLNSVD-T 377 (475)
Q Consensus 309 sg~-~Dg~I~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~-------~~~~~~~-~ 377 (475)
++. .++.+.+++..+++.+..... +......+.+...+...+.+.....|+.+.+|+.... +....+. +
T Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~ 302 (426)
T d1hzua2 223 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ 302 (426)
T ss_dssp EEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred eeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecC
Confidence 776 456799999999988766643 2222334444433333333222346888988887543 5566664 5
Q ss_pred CCCeeEEEEcCCCCeEEEE-----EecCCCeEEEEECCCCceEEEe---------cCCCcceEEEEECCCCCEEEE-E--
Q 011916 378 GSQVCNLAWSKNVNELVST-----HGYSQNQIMVWKYPSMAKVSTL---------TGHSLRVLYLATSPDGQTIVT-G-- 440 (475)
Q Consensus 378 ~~~v~~l~~s~~~~~l~~~-----~g~~dg~I~iwd~~~~~~~~~l---------~~h~~~V~~l~~spdg~~l~s-~-- 440 (475)
...+..++|+|++++|++. .+..++.|+|||+.+++...++ ..|..+|.+++|||||++|+. +
T Consensus 303 ~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~ 382 (426)
T d1hzua2 303 GGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWN 382 (426)
T ss_dssp SSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECC
T ss_pred CCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEec
Confidence 6779999999999999962 1445789999999998876554 246677999999999997743 3
Q ss_pred --eCCCCEEEEecCCCCCCCC
Q 011916 441 --AGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 441 --s~Dg~I~iW~~~~~~~~~~ 459 (475)
+.|+.|+|||..+.+....
T Consensus 383 ~~~~~~~i~v~D~~T~k~~~~ 403 (426)
T d1hzua2 383 GKNDSSALVVVDDKTLKLKAV 403 (426)
T ss_dssp CTTSCCEEEEEETTTTEEEEE
T ss_pred CCCCCCeEEEEECCCCeEEEE
Confidence 3578899999998875543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=2.3e-18 Score=161.18 Aligned_cols=243 Identities=14% Similarity=0.082 Sum_probs=191.2
Q ss_pred eeEEecCCC-C-EEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEECCCCeeeEE
Q 011916 171 LNLVDWSSQ-N-VLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV-GTNLGQVQVWDGTQCKRVRT 246 (475)
Q Consensus 171 v~~l~ws~~-~-~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~-g~~dg~v~iwd~~~~~~~~~ 246 (475)
...++|+|+ + +++++ .++.|.+||+.+++....+.. ...+..++|++++.++++ +..++.+.+|+..+++....
T Consensus 34 p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (301)
T d1l0qa2 34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA--GSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT 111 (301)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec--cccccccccccccccccccccccceeeecccccceeeee
Confidence 566899987 4 43444 478999999999998887753 346789999999986665 45577899999999998888
Q ss_pred ecCCCCceEEEEe--CCCEE-EEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-CcEEEEECC
Q 011916 247 FGGHQTRAGVLAW--NSRIL-SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-NQLLVWNQH 322 (475)
Q Consensus 247 ~~~h~~~v~~l~~--~~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g~I~iwd~~ 322 (475)
+..+. ...++.+ ++..+ +++..++.+.+|+.. .......+.. ...+..+.+++++..+++++.+ +.+.+|+..
T Consensus 112 ~~~~~-~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (301)
T d1l0qa2 112 VKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTVSV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (301)
T ss_dssp EECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred ccccc-cceEEEeecCCCeeeeeeccccceeeeecc-ccceeeeccc-CCCceEEEeeccccceeeeccccccccccccc
Confidence 87554 4566777 45554 566678899999997 4455555543 4558899999999988888765 567778877
Q ss_pred CCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCC
Q 011916 323 SQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQN 402 (475)
Q Consensus 323 ~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg 402 (475)
..+....+. ....+..++|++++..+++++.+..++.|++||+.+++.+..+..+..+..++|+|+|++|+++ +..++
T Consensus 189 ~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va-~~~~~ 266 (301)
T d1l0qa2 189 TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVA-LSFCN 266 (301)
T ss_dssp TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEE-ETTTT
T ss_pred ceeeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEE-ECCCC
Confidence 776655554 4466788999999998887765556789999999999999999888899999999999988654 66789
Q ss_pred eEEEEECCCCceEEEecC
Q 011916 403 QIMVWKYPSMAKVSTLTG 420 (475)
Q Consensus 403 ~I~iwd~~~~~~~~~l~~ 420 (475)
.|.+||+.+++.+.++.-
T Consensus 267 ~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 267 TVSVIDTATNTITATMAV 284 (301)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCCCeEEEEEeC
Confidence 999999999999888863
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=4.7e-19 Score=168.75 Aligned_cols=269 Identities=10% Similarity=0.137 Sum_probs=188.5
Q ss_pred EEEEcCCeEEEEECCCCcE-EEEeeCCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCeeeEEe---cCCCCceEE
Q 011916 182 LAVGLGTCVYLWTASNSKV-TRLCDLGPGDSVCSVQWTREGSYISVGTN-LGQVQVWDGTQCKRVRTF---GGHQTRAGV 256 (475)
Q Consensus 182 la~~~~~~V~lw~~~~~~~-~~~~~~~~~~~V~~v~~spdg~~la~g~~-dg~v~iwd~~~~~~~~~~---~~h~~~v~~ 256 (475)
++.+.++.|++|++.+... ..+-.+.+.+.+.+|+|+|||++|++++. |+.|++|++........+ ..+...+..
T Consensus 8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~ 87 (333)
T d1ri6a_ 8 IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTH 87 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSE
T ss_pred EECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceE
Confidence 3444689999999875433 22222367788999999999999966654 899999998765433222 234455667
Q ss_pred EEe--CCCEEEEEeC-CCcEEEEECCCCCc-cEEEecCccCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeEEE-
Q 011916 257 LAW--NSRILSSGSR-DRNILQHDLRVSSD-YICKLAGHKSEVCGLKWSHDDRELASGGN-DNQLLVWNQHSQQPTLRL- 330 (475)
Q Consensus 257 l~~--~~~~l~sgs~-dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~~~~~lasg~~-Dg~I~iwd~~~~~~~~~~- 330 (475)
++| ++++|++++. ++.|.+|+...... .......+...+.++.++++++++++++. +..|.+|+..........
T Consensus 88 l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (333)
T d1ri6a_ 88 ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQD 167 (333)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred EEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeee
Confidence 888 4678888774 67889998763322 22334456777889999999998888774 457999998765433221
Q ss_pred -----eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce----eeee-------cCCCCeeEEEEcCCCCeEE
Q 011916 331 -----TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ----LNSV-------DTGSQVCNLAWSKNVNELV 394 (475)
Q Consensus 331 -----~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~----~~~~-------~~~~~v~~l~~s~~~~~l~ 394 (475)
.........++|++++..++.+.. ..+...+|+...... ...+ ........+++++++++++
T Consensus 168 ~~~~~~~~g~~p~~i~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~ 245 (333)
T d1ri6a_ 168 PAEVTTVEGAGPRHMVFHPNEQYAYCVNE--LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 245 (333)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred ceeeeeecCCCccEEEEeccceeEEeecc--ccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence 123445688999999998888765 677888888654321 1111 1234577889999999888
Q ss_pred EEEecCCCeEEEEECCCCceEEEec---CCCcceEEEEECCCCCEEEEEeC-CCCEEEEecCC
Q 011916 395 STHGYSQNQIMVWKYPSMAKVSTLT---GHSLRVLYLATSPDGQTIVTGAG-DETLRFWNVFP 453 (475)
Q Consensus 395 ~~~g~~dg~I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~-Dg~I~iW~~~~ 453 (475)
++ +..++.+.+|++........+. .+...+.+++|+|||++|++++. ++.|++|+++.
T Consensus 246 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 246 AC-DRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp EE-ETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred ee-cccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 75 5678899999987654433332 24456788999999999887754 68899997764
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.83 E-value=2.8e-17 Score=159.32 Aligned_cols=279 Identities=10% Similarity=-0.058 Sum_probs=193.5
Q ss_pred ceeEEecCCC-CEEEEE------cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC----------CCe
Q 011916 170 YLNLVDWSSQ-NVLAVG------LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN----------LGQ 232 (475)
Q Consensus 170 ~v~~l~ws~~-~~la~~------~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~----------dg~ 232 (475)
.+..++++|+ ..+++. ..+.|++||..+++.+..+..+ ....++|+|||++|+++.. ++.
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~---~~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~ 98 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG---FLPNPVAAHSGSEFALASTSFSRIAKGKRTDY 98 (373)
T ss_pred CccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCC---CCccEEEcCCCCEEEEEeecCCcccccccceE
Confidence 3556778887 333332 2457999999999998887532 2337999999999998753 578
Q ss_pred EEEEECCCCeeeEEecCCCCceEEEEe---------CCCEEEEE--eCCCcEEEEECCCCCccEEEecCccCCEEEEEEc
Q 011916 233 VQVWDGTQCKRVRTFGGHQTRAGVLAW---------NSRILSSG--SRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS 301 (475)
Q Consensus 233 v~iwd~~~~~~~~~~~~h~~~v~~l~~---------~~~~l~sg--s~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 301 (475)
|.+||..+++.+..+..+......+.. +++.++.. ..++.+.+|+... ... ..+.....++.++
T Consensus 99 v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~s 173 (373)
T d2madh_ 99 VEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG-SSD----DQLLSSPTCYHIH 173 (373)
T ss_pred EEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC-CeE----EEEeccceeEEEe
Confidence 999999999999888776665544333 34433322 3345566666652 222 2333456788999
Q ss_pred CCCCEE-EEEeCCCcEEEEECCCCceeEEEecc------ccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee
Q 011916 302 HDDREL-ASGGNDNQLLVWNQHSQQPTLRLTEH------TAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS 374 (475)
Q Consensus 302 ~~~~~l-asg~~Dg~I~iwd~~~~~~~~~~~~h------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~ 374 (475)
++++.+ ++.+.|+.+.+|+...+........+ ......+.+.+++.. ++.+ .++.+.+|+..++.....
T Consensus 174 ~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~v~~~~~~~~~~~~~ 249 (373)
T d2madh_ 174 PGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPV---YSGKILQADISAAGATNK 249 (373)
T ss_pred cCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEec---CCceEEEEEcCCCeEEEE
Confidence 988754 67889999999999988766554432 223345666776653 3332 689999999887654322
Q ss_pred ec-------------CCCCeeEEEEcCCCCeEEEE--------EecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 375 VD-------------TGSQVCNLAWSKNVNELVST--------HGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 375 ~~-------------~~~~v~~l~~s~~~~~l~~~--------~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
.. .......+++++++..++.. ....++.+.+||..+++.+..+. +...+..++|+||
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spD 328 (373)
T d2madh_ 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQD 328 (373)
T ss_pred EeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECCC
Confidence 21 11234456777777766542 13456789999999999988875 6667899999999
Q ss_pred CCE--EEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 434 GQT--IVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 434 g~~--l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
|+. +++++.|++|++||+.+++....+.
T Consensus 329 G~~~l~vt~~~d~~v~v~D~~tg~~~~~~~ 358 (373)
T d2madh_ 329 GGPDLYALSAGTEVLHIYDAGAGDQDQSTV 358 (373)
T ss_pred CCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence 984 4678899999999999998877664
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=2.5e-18 Score=171.51 Aligned_cols=192 Identities=13% Similarity=0.097 Sum_probs=153.8
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCcc-EEE---ecCccCCE
Q 011916 222 SYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDY-ICK---LAGHKSEV 295 (475)
Q Consensus 222 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~-~~~---~~~h~~~V 295 (475)
-++++.+.+|+|.|||..+++.+..+..+. .+..++| +|++|++++.|+.|.+||+.+.... ... ...|.+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~ 111 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE 111 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence 345788889999999999999999998774 6889999 5799999999999999999854432 222 23466666
Q ss_pred EEEEEcCCCCEE-EEEeCCCcEEEEECCCCceeEEEecc-----------ccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 296 CGLKWSHDDREL-ASGGNDNQLLVWNQHSQQPTLRLTEH-----------TAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 296 ~~l~~s~~~~~l-asg~~Dg~I~iwd~~~~~~~~~~~~h-----------~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
.+..|+|||++| +++..++.|++||..+++++..+..| .....++.++|++..++++.. .++.|.+
T Consensus 112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~--~~~~i~~ 189 (432)
T d1qksa2 112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK--ETGKILL 189 (432)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET--TTTEEEE
T ss_pred EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEc--cCCeEEE
Confidence 777788899976 67888999999999999988776543 344567899999998888875 7899999
Q ss_pred EECCCCcee--eeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEE
Q 011916 364 WNTSNGHQL--NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVST 417 (475)
Q Consensus 364 wd~~~~~~~--~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~ 417 (475)
||..+++.. ..+.++..+..++|+|+|++++++ +..++.+.++|..+++.+..
T Consensus 190 ~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va-~~~~~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 190 VDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITA-ANARNKLVVIDTKEGKLVAI 244 (432)
T ss_dssp EETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEE-EGGGTEEEEEETTTTEEEEE
T ss_pred EEccCCCcceEEEEcccCccccceECCCCCEEEEe-ccccceEEEeecccceEEEE
Confidence 999988754 456677889999999999998886 45677899999876655443
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.77 E-value=1.5e-16 Score=150.82 Aligned_cols=239 Identities=11% Similarity=0.097 Sum_probs=176.6
Q ss_pred ceeEEecCCC-CEE-EEE-cCCeEEEEECCCCcEEEEeeCCC----CCcEEEEEEcCCCCEEEEEeC------------C
Q 011916 170 YLNLVDWSSQ-NVL-AVG-LGTCVYLWTASNSKVTRLCDLGP----GDSVCSVQWTREGSYISVGTN------------L 230 (475)
Q Consensus 170 ~v~~l~ws~~-~~l-a~~-~~~~V~lw~~~~~~~~~~~~~~~----~~~V~~v~~spdg~~la~g~~------------d 230 (475)
.+..++++|+ +.+ +++ .++.|++||+.+++......... ...+..++|+|++++++++.. +
T Consensus 35 ~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~ 114 (337)
T d1pbyb_ 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP 114 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred CccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccc
Confidence 3566899987 443 444 47899999999999888776422 123457899999999988763 5
Q ss_pred CeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCC-----
Q 011916 231 GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHD----- 303 (475)
Q Consensus 231 g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~----- 303 (475)
+.+.+||..+++....+..+ ..+..++| ++.++++++. .+.+||.. .......+..+... ....++++
T Consensus 115 ~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~--~~~~~d~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 189 (337)
T d1pbyb_ 115 TRVALYDAETLSRRKAFEAP-RQITMLAWARDGSKLYGLGR--DLHVMDPE-AGTLVEDKPIQSWE-AETYAQPDVLAVW 189 (337)
T ss_dssp CEEEEEETTTTEEEEEEECC-SSCCCEEECTTSSCEEEESS--SEEEEETT-TTEEEEEECSTTTT-TTTBCCCBCCCCC
T ss_pred cceeeccccCCeEEEecccc-CCceEEEEcCCCCEEEEEcC--Ccceeeee-cCcEEEEeecCCcc-ccceecCCcceee
Confidence 78999999999998888744 45667777 5778888764 47789987 44444444332211 01111111
Q ss_pred -------------------CCEEEEEeCCCcEEEEECCCCceeE-EEeccccceeEEEECCCCCcEEEEecCCCCCeEEE
Q 011916 304 -------------------DRELASGGNDNQLLVWNQHSQQPTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRF 363 (475)
Q Consensus 304 -------------------~~~lasg~~Dg~I~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~i 363 (475)
...+..+..++.+.+||..++.... .+..+...+..++++|++..++. .++.|++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~i~v 264 (337)
T d1pbyb_ 190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFG-----AYNVLES 264 (337)
T ss_dssp CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEE-----EESEEEE
T ss_pred ccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEE-----ccccEEE
Confidence 1111222334568999999887554 34557778889999999986654 3789999
Q ss_pred EECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC
Q 011916 364 WNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG 420 (475)
Q Consensus 364 wd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~ 420 (475)
||+.+++.+..+.....+.+++|+|+|++|++ +..++.|.+||..+++.+.+++.
T Consensus 265 ~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v--~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 265 FDLEKNASIKRVPLPHSYYSVNVSTDGSTVWL--GGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EETTTTEEEEEEECSSCCCEEEECTTSCEEEE--ESBSSEEEEEETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEcCCCCEEEEEECCCCCEEEE--EeCCCcEEEEECCCCcEEEEEEC
Confidence 99999999999999999999999999999998 77899999999999999988864
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=4.3e-16 Score=149.45 Aligned_cols=262 Identities=12% Similarity=0.080 Sum_probs=176.9
Q ss_pred CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEecCCCC----
Q 011916 187 GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT----------NLGQVQVWDGTQCKRVRTFGGHQT---- 252 (475)
Q Consensus 187 ~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~----------~dg~v~iwd~~~~~~~~~~~~h~~---- 252 (475)
.+.|++||..+++++..+..+ .+..++|+|||++|++.+ .+|.|.+||..+++.+..+..+..
T Consensus 27 ~~~v~v~D~~tg~~~~~~~~g---~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~ 103 (355)
T d2bbkh_ 27 VTQQFVIDGEAGRVIGMIDGG---FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFL 103 (355)
T ss_dssp SEEEEEEETTTTEEEEEEEEC---SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC
T ss_pred cCeEEEEECCCCcEEEEEECC---CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceee
Confidence 457999999999988877633 333799999999888753 478999999999998887754332
Q ss_pred ---ceEEEEe--CCCEEEEEe--CCCcEEEEECCCCCccEEEecCccC-------CEEEEEEcCCCCEEEEEe-CCCcEE
Q 011916 253 ---RAGVLAW--NSRILSSGS--RDRNILQHDLRVSSDYICKLAGHKS-------EVCGLKWSHDDRELASGG-NDNQLL 317 (475)
Q Consensus 253 ---~v~~l~~--~~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~h~~-------~V~~l~~s~~~~~lasg~-~Dg~I~ 317 (475)
....++| +++.++.+. .+..+.+|+.. ....+..+..+.. ....+.+++++..++... .++.+.
T Consensus 104 ~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~ 182 (355)
T d2bbkh_ 104 VGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPE 182 (355)
T ss_dssp BSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred cCCCCceEEEecCCCeeEEecCCCCceeeeeecC-CCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEE
Confidence 2234555 567666654 56788999997 4555555443322 122344555555444332 223344
Q ss_pred EEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeee--ec-----------CCCCeeEE
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNS--VD-----------TGSQVCNL 384 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~--~~-----------~~~~v~~l 384 (475)
+++...... .+...+....+.+++..++.+. .++.+++|++..+..... .. .......+
T Consensus 183 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 254 (355)
T d2bbkh_ 183 ITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPT---YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 254 (355)
T ss_dssp EEECCCCSC-----TTSCBCSCCEEETTTTEEEEEB---TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCE
T ss_pred EEecccccc-----eecceeeeccccCCCCeEEEec---CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEE
Confidence 444333221 2344456677887777666653 799999999988754321 11 01234568
Q ss_pred EEcCCCCeEEEEEecC--------CCeEEEEECCCCceEEEecCCCcceEEEEECCCCC--EEEEEeCCCCEEEEecCCC
Q 011916 385 AWSKNVNELVSTHGYS--------QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ--TIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 385 ~~s~~~~~l~~~~g~~--------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~l~s~s~Dg~I~iW~~~~~ 454 (475)
++++++..+++..... .+.|.+||..+++.+..+. +...+.+++|+|||+ ++++++.|++|++||+.++
T Consensus 255 ~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg 333 (355)
T d2bbkh_ 255 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 333 (355)
T ss_dssp EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence 8999999988753221 2479999999999988886 445689999999997 4566778999999999998
Q ss_pred CCCCCcc
Q 011916 455 LKAPALV 461 (475)
Q Consensus 455 ~~~~~~~ 461 (475)
+....+.
T Consensus 334 ~~~~~i~ 340 (355)
T d2bbkh_ 334 EELRSVN 340 (355)
T ss_dssp CEEEEEC
T ss_pred CEEEEEe
Confidence 8766543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=1e-15 Score=146.85 Aligned_cols=260 Identities=10% Similarity=0.045 Sum_probs=182.1
Q ss_pred EEecCCC-C-EEEEE----------cCCeEEEEECCCCcEEEEeeCCC------CCcEEEEEEcCCCCEEEEEeC--CCe
Q 011916 173 LVDWSSQ-N-VLAVG----------LGTCVYLWTASNSKVTRLCDLGP------GDSVCSVQWTREGSYISVGTN--LGQ 232 (475)
Q Consensus 173 ~l~ws~~-~-~la~~----------~~~~V~lw~~~~~~~~~~~~~~~------~~~V~~v~~spdg~~la~g~~--dg~ 232 (475)
.++|||+ + +++++ .++.|.+||..+++....+.... ......++|+++|++++++.. +..
T Consensus 51 ~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 130 (355)
T d2bbkh_ 51 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 130 (355)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCce
Confidence 5889997 3 43332 36789999999999887765321 123356899999999888753 568
Q ss_pred EEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEE-----ecCccCCEEEEEEcCCCCEE
Q 011916 233 VQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICK-----LAGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 233 v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-----~~~h~~~V~~l~~s~~~~~l 307 (475)
+.+|+..+++.+..+..+.... .........+..+.|+....+........... ...+...+....+.+++..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (355)
T d2bbkh_ 131 VGVVDLEGKAFKRMLDVPDCYH-IFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRL 209 (355)
T ss_dssp EEEEETTTTEEEEEEECCSEEE-EEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred eeeeecCCCcEeeEEecCCcce-EeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeE
Confidence 9999999999988877544322 22223455556666776666655433322211 11233345566788888899
Q ss_pred EEEeCCCcEEEEECCCCceeE--EEecc----------ccceeEEEECCCCCcEEEEecC-------CCCCeEEEEECCC
Q 011916 308 ASGGNDNQLLVWNQHSQQPTL--RLTEH----------TAAVKAIAWSPHQSSLLASGGG-------TADRCIRFWNTSN 368 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~~~~--~~~~h----------~~~v~~l~~sp~~~~ll~sg~G-------s~d~~I~iwd~~~ 368 (475)
+.++.++.+++|++..++... ....+ ......+++++++..+++.... .....|.+||..+
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t 289 (355)
T d2bbkh_ 210 VWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT 289 (355)
T ss_dssp EEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred EEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCC
Confidence 999999999999998775422 11111 1234568899999977765431 1235799999999
Q ss_pred CceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 369 GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 369 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
++.+..+..+..+.+++|+|+|+.++.+++..++.|++||..+++.+.++.++......+.+..+
T Consensus 290 ~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 290 GERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp CCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred CcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence 99999998888899999999998655444778999999999999999999876555555555443
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.71 E-value=1.1e-15 Score=145.28 Aligned_cols=245 Identities=11% Similarity=0.078 Sum_probs=174.0
Q ss_pred CCceeEEecCCC-CE-EEEE-cCCeEEEEECCCCcEEEEeeCCCC-----CcEEEEEEcCCCCEEEEEe-----------
Q 011916 168 DFYLNLVDWSSQ-NV-LAVG-LGTCVYLWTASNSKVTRLCDLGPG-----DSVCSVQWTREGSYISVGT----------- 228 (475)
Q Consensus 168 d~~v~~l~ws~~-~~-la~~-~~~~V~lw~~~~~~~~~~~~~~~~-----~~V~~v~~spdg~~la~g~----------- 228 (475)
...+..++|+|+ .. ++++ .++.|++||+.+++.......... ..+..++|+|||++++++.
T Consensus 39 ~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~ 118 (346)
T d1jmxb_ 39 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118 (346)
T ss_dssp CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeec
Confidence 344677999997 43 3444 478999999999998887764322 2356789999999998875
Q ss_pred -CCCeEEEEECCCCeeeEEecCC--CCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCC
Q 011916 229 -NLGQVQVWDGTQCKRVRTFGGH--QTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDD 304 (475)
Q Consensus 229 -~dg~v~iwd~~~~~~~~~~~~h--~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~ 304 (475)
.++.+.+|+..+++....+..+ ...+..+.+ ++..++..+ +.+.+|++. ....+..+..+.. ...+.++|++
T Consensus 119 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~ 194 (346)
T d1jmxb_ 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG--PDIYKMDVK-TGKYTVALPLRNW-NRKGYSAPDV 194 (346)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES--SSEEEECTT-TCCEEEEECSTTC-CCTTBCCCBC
T ss_pred cCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC--CcceEEEcc-CCCEEEEEecCCC-ccceEEeccc
Confidence 3677899998877665444322 223444444 233333332 568889987 4455555543322 2333334433
Q ss_pred C--------------------------EEEEEeCCCcEEEEECCCCceeE-EEeccccceeEEEECCCCCcEEEEecCCC
Q 011916 305 R--------------------------ELASGGNDNQLLVWNQHSQQPTL-RLTEHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 305 ~--------------------------~lasg~~Dg~I~iwd~~~~~~~~-~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
. .++++..+..+.+||+.++.... .+..|...+..+.+++++.+++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 270 (346)
T d1jmxb_ 195 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---- 270 (346)
T ss_dssp CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE----
T ss_pred cEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec----
Confidence 3 23334445678889988876544 3456788899999999998777653
Q ss_pred CCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 358 DRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 358 d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
++.|.+||..+++.+..+..+..+.+++|+|||+.|++ +..++.|++||..+++.+.+++.+.
T Consensus 271 ~~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v--~~~d~~v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 271 LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYL--GGTFNDLAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEE--ESBSSEEEEEETTTTEEEEEEECSS
T ss_pred CCeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEE--EeCCCcEEEEECccCCEEEEEECCC
Confidence 57899999999999999988889999999999999999 7789999999999999999887544
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.69 E-value=6.9e-14 Score=134.94 Aligned_cols=255 Identities=7% Similarity=-0.046 Sum_probs=177.9
Q ss_pred EEecCCC-CEEEEE-----------cCCeEEEEECCCCcEEEEeeCCCCC------cEEEEEEcCCCCEEEEEeC--CCe
Q 011916 173 LVDWSSQ-NVLAVG-----------LGTCVYLWTASNSKVTRLCDLGPGD------SVCSVQWTREGSYISVGTN--LGQ 232 (475)
Q Consensus 173 ~l~ws~~-~~la~~-----------~~~~V~lw~~~~~~~~~~~~~~~~~------~V~~v~~spdg~~la~g~~--dg~ 232 (475)
.+.|+|+ ..++++ .++.|.+||..+++........... ....+.|+++++.+++... ++.
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~ 149 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCc
Confidence 4788887 444443 2478999999999988776532221 1245789999987776654 567
Q ss_pred EEEEECCCCeeeEEecCCCCceEEEEe--CC-CEEEEEeCCCcEEEEECCCCCccEEEecC------ccCCEEEEEEcCC
Q 011916 233 VQVWDGTQCKRVRTFGGHQTRAGVLAW--NS-RILSSGSRDRNILQHDLRVSSDYICKLAG------HKSEVCGLKWSHD 303 (475)
Q Consensus 233 v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~------h~~~V~~l~~s~~ 303 (475)
+.+|+....+....... ..++.+ ++ ..+++.+.|+.+.+|+... ......... +......+.+.++
T Consensus 150 ~~~~~~~~~~~~~~~~~----~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (373)
T d2madh_ 150 VGLVVQGGSSDDQLLSS----PTCYHIHPGAPSTFYLLCAQGGLAKTDHAG-GAAGAGLVGAMLTAAQNLLTQPAQANKS 224 (373)
T ss_pred eEEeeccCCeEEEEecc----ceeEEEecCCCcEEEEEcCCCeEEEEEcCC-ceeeEEEeeeccccCccceeeeEEECCC
Confidence 89999888776655542 334444 44 5668889999999999873 333332221 2223445566666
Q ss_pred CCEEEEEeCCCcEEEEECCCCceeEE--Eecc----------ccceeEEEECCCCCcEEEEec-------CCCCCeEEEE
Q 011916 304 DRELASGGNDNQLLVWNQHSQQPTLR--LTEH----------TAAVKAIAWSPHQSSLLASGG-------GTADRCIRFW 364 (475)
Q Consensus 304 ~~~lasg~~Dg~I~iwd~~~~~~~~~--~~~h----------~~~v~~l~~sp~~~~ll~sg~-------Gs~d~~I~iw 364 (475)
+. ++..+.++.+++|+......... ...+ ......+++++++..++.... ...++.+.+|
T Consensus 225 ~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~ 303 (373)
T d2madh_ 225 GR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV 303 (373)
T ss_pred ce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence 54 45556788999999887653221 1111 223345677777765544321 1256789999
Q ss_pred ECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCC
Q 011916 365 NTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPD 433 (475)
Q Consensus 365 d~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spd 433 (475)
|+.+++.+..+.++..+..++|+|||+.++.+++..++.|++||+.+++.+..+..+......|++..+
T Consensus 304 d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 304 TGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred ECCCCcEEEEecCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 999999999999999999999999999765545889999999999999999999988777777776543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.62 E-value=1.3e-13 Score=138.12 Aligned_cols=137 Identities=14% Similarity=0.116 Sum_probs=103.8
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCcEEEEeeC----CCCCcEEEEEEcCCCCEEEEEeC---------CCeEEEEECCC
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDL----GPGDSVCSVQWTREGSYISVGTN---------LGQVQVWDGTQ 240 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~----~~~~~V~~v~~spdg~~la~g~~---------dg~v~iwd~~~ 240 (475)
+.|.++.-+....++.+++||+.+++...++.. .+...|.++.|||||++|+.++. ++.+.|||+++
T Consensus 22 ~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~ 101 (470)
T d2bgra1 22 LRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK 101 (470)
T ss_dssp CEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred CEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCC
Confidence 678888655566788999999999998777652 23467999999999999998854 57789999998
Q ss_pred CeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCc------------------cCCEEEEEE
Q 011916 241 CKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGH------------------KSEVCGLKW 300 (475)
Q Consensus 241 ~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h------------------~~~V~~l~~ 300 (475)
++. ..+..|...+..+.| +|+.|+.. .++.+.+|+... +...+....+ .+....+.|
T Consensus 102 ~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~-g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~w 178 (470)
T d2bgra1 102 RQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPN-LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWW 178 (470)
T ss_dssp TEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTT-SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred Ccc-cccccCCccccccccccCcceeeEe-ecccceEEECCC-CceeeeeeccCCCcccccccceeeeeeecCCccccEE
Confidence 874 557788899999999 56888875 567899999873 3333322211 223456889
Q ss_pred cCCCCEEEEEeCC
Q 011916 301 SHDDRELASGGND 313 (475)
Q Consensus 301 s~~~~~lasg~~D 313 (475)
||||++||....|
T Consensus 179 SPDGk~ia~~~~d 191 (470)
T d2bgra1 179 SPNGTFLAYAQFN 191 (470)
T ss_dssp CTTSSEEEEEEEE
T ss_pred CCCCCccceeEec
Confidence 9999999997644
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.8e-13 Score=129.28 Aligned_cols=233 Identities=12% Similarity=0.140 Sum_probs=165.6
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEe--cCCCCceEEEEe--CCCEEEEE-eCCCcEEEEECCCCCccEE--EecCccCCE
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVRTF--GGHQTRAGVLAW--NSRILSSG-SRDRNILQHDLRVSSDYIC--KLAGHKSEV 295 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~~~--~~h~~~v~~l~~--~~~~l~sg-s~dg~I~iwd~~~~~~~~~--~~~~h~~~V 295 (475)
.++++..|++|+||++.....+..+ ..|.+.+..|+| +|++|+++ ..|+.|.+|++........ ....+...+
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p 85 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL 85 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence 3567778999999998765433322 357788999998 46777555 4589999999975443222 223345567
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEECCCCceeE--EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee
Q 011916 296 CGLKWSHDDRELASGGN-DNQLLVWNQHSQQPTL--RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL 372 (475)
Q Consensus 296 ~~l~~s~~~~~lasg~~-Dg~I~iwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~ 372 (475)
+.++|+|||++|++++. ++.|.+|+........ ....+...+.++.++|+++++++... .+..|.+|+..+....
T Consensus 86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~--~~~~i~~~~~~~~~~~ 163 (333)
T d1ri6a_ 86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL--KQDRICLFTVSDDGHL 163 (333)
T ss_dssp SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG--GGTEEEEEEECTTSCE
T ss_pred eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc--ccceeeEEEeccCCcc
Confidence 88999999999999875 6689999887665433 33456677899999999998888765 6788999998765433
Q ss_pred ee-------ecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc----eEEEec------CCCcceEEEEECCCCC
Q 011916 373 NS-------VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA----KVSTLT------GHSLRVLYLATSPDGQ 435 (475)
Q Consensus 373 ~~-------~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~----~~~~l~------~h~~~V~~l~~spdg~ 435 (475)
.. ...+.....++|++++..++.. ....+...+|++.... ....+. ........+++++|++
T Consensus 164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~ 242 (333)
T d1ri6a_ 164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCV-NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR 242 (333)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEE-ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred eeeeceeeeeecCCCccEEEEeccceeEEee-ccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence 22 2345667899999999998775 5567788888875432 222221 1234567789999999
Q ss_pred EEEEE-eCCCCEEEEecCCCCCCC
Q 011916 436 TIVTG-AGDETLRFWNVFPSLKAP 458 (475)
Q Consensus 436 ~l~s~-s~Dg~I~iW~~~~~~~~~ 458 (475)
+++.+ ..++.+.+|++.......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~ 266 (333)
T d1ri6a_ 243 HLYACDRTASLITVFSVSEDGSVL 266 (333)
T ss_dssp EEEEEETTTTEEEEEEECTTSCCE
T ss_pred ceeeecccCCeEEEEEEcCCCCEE
Confidence 77665 557889999998765443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.61 E-value=4.1e-14 Score=137.03 Aligned_cols=261 Identities=9% Similarity=-0.035 Sum_probs=177.6
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe----------CCCeEEEEECCCCeeeEEecCCCCc----
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT----------NLGQVQVWDGTQCKRVRTFGGHQTR---- 253 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~----------~dg~v~iwd~~~~~~~~~~~~h~~~---- 253 (475)
..|++||..+++.......+. .. .++|+|||++|++.+ .|+.|.+||..+++.+..+..+...
T Consensus 46 ~~~~~~d~~~~~~~~~~~~~~-~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~ 122 (368)
T d1mdah_ 46 TENWVSCAGCGVTLGHSLGAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122 (368)
T ss_dssp EEEEEEETTTTEEEEEEEECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCB
T ss_pred ceEEEEeCCCCcEEEEEeCCC-CC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecc
Confidence 468899999999988876433 22 588999999999865 3678999999999998887644321
Q ss_pred ---eEEEEe--CCCEEEEEe-CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcee
Q 011916 254 ---AGVLAW--NSRILSSGS-RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPT 327 (475)
Q Consensus 254 ---v~~l~~--~~~~l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~ 327 (475)
...++| +|++|+++. .++.+.+||+. ..+....+..+..... +......++..+.||.+.+|++......
T Consensus 123 g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~ 198 (368)
T d1mdah_ 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVP-GASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEET-TTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred cCCccceEECCCCCEEEEEeCCCCeEEEEECC-CCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCcee
Confidence 123555 677777665 67999999998 5565555554433211 1123346666777888888887654332
Q ss_pred EEE------eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC-------------CCCeeEEEEcC
Q 011916 328 LRL------TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT-------------GSQVCNLAWSK 388 (475)
Q Consensus 328 ~~~------~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-------------~~~v~~l~~s~ 388 (475)
... ..+...+..+.+.+++..+.. ..+.+++++...+........ ......+++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~ 273 (368)
T d1mdah_ 199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWA-----VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp CEECCCCSCTTSCBCSCCEEETTTTEEEEC-----BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred eeeeecccccccccceeecccccCcEEEEe-----cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcC
Confidence 221 234455667788888763333 456677777766544332211 12234588999
Q ss_pred CCCeEEEEEecC-------CCeEEEEECCCCceEEEecCCCcceEEEEECCCCC--EEEEEeCCCCEEEEecCCCCCCCC
Q 011916 389 NVNELVSTHGYS-------QNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQ--TIVTGAGDETLRFWNVFPSLKAPA 459 (475)
Q Consensus 389 ~~~~l~~~~g~~-------dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~l~s~s~Dg~I~iW~~~~~~~~~~ 459 (475)
++..++++.... ...|.+||..+++.+..+. +...+..++|+|||+ .++++..|+.|++||..+++....
T Consensus 274 ~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~ 352 (368)
T d1mdah_ 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSS 352 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEE
T ss_pred CCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEE
Confidence 998887743221 2369999999999888776 445788999999997 345677899999999999887665
Q ss_pred cc
Q 011916 460 LV 461 (475)
Q Consensus 460 ~~ 461 (475)
+.
T Consensus 353 i~ 354 (368)
T d1mdah_ 353 VE 354 (368)
T ss_dssp CC
T ss_pred EE
Confidence 54
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=4.2e-14 Score=136.97 Aligned_cols=248 Identities=8% Similarity=-0.040 Sum_probs=174.3
Q ss_pred eEEecCCC-CEEEEEc-----------CCeEEEEECCCCcEEEEeeCCCC------CcEEEEEEcCCCCEEEEEe-CCCe
Q 011916 172 NLVDWSSQ-NVLAVGL-----------GTCVYLWTASNSKVTRLCDLGPG------DSVCSVQWTREGSYISVGT-NLGQ 232 (475)
Q Consensus 172 ~~l~ws~~-~~la~~~-----------~~~V~lw~~~~~~~~~~~~~~~~------~~V~~v~~spdg~~la~g~-~dg~ 232 (475)
..+.|+++ ..+++.. ++.|.+||..+++....+..... .....++|+|||++|+++. .++.
T Consensus 68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~ 147 (368)
T d1mdah_ 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA 147 (368)
T ss_dssp CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence 34788887 4444432 46799999999998887754221 2234689999999998886 4699
Q ss_pred EEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEE-----ecCccCCEEEEEEcCCCCEE
Q 011916 233 VQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICK-----LAGHKSEVCGLKWSHDDREL 307 (475)
Q Consensus 233 v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~-----~~~h~~~V~~l~~s~~~~~l 307 (475)
+.+||+.+++.+..+..+..... .......++..+.||.+.++++......... ...+...+....+.+++..+
T Consensus 148 v~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 226 (368)
T d1mdah_ 148 AAGLSVPGASDDQLTKSASCFHI-HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV 226 (368)
T ss_dssp EEEEEETTTEEEEEEECSSCCCC-EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred EEEEECCCCcEeEEeeccCcceE-ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence 99999999999998876544322 1223567788889999999988754433322 22344455667788887666
Q ss_pred EEEeCCCcEEEEECCCCceeEEEe--c----------cccceeEEEECCCCCcEEEEecC------CCCCeEEEEECCCC
Q 011916 308 ASGGNDNQLLVWNQHSQQPTLRLT--E----------HTAAVKAIAWSPHQSSLLASGGG------TADRCIRFWNTSNG 369 (475)
Q Consensus 308 asg~~Dg~I~iwd~~~~~~~~~~~--~----------h~~~v~~l~~sp~~~~ll~sg~G------s~d~~I~iwd~~~~ 369 (475)
.+. .+.++++++.......... . .......+++++++..+++...+ .....|.+||..++
T Consensus 227 ~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~ 304 (368)
T d1mdah_ 227 WAV--ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG 304 (368)
T ss_dssp ECB--SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred Eec--CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCC
Confidence 554 3567777776554332211 1 11223568899998877665320 11246999999999
Q ss_pred ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCC
Q 011916 370 HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHS 422 (475)
Q Consensus 370 ~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~ 422 (475)
+.+..+..+..+..++|+|||+.++.+++..++.|++||..+++.+.++....
T Consensus 305 ~~~~~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 305 QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp CEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred cEeEEecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCC
Confidence 99999888888999999999986544447788999999999999999987543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.47 E-value=1.7e-12 Score=126.88 Aligned_cols=256 Identities=11% Similarity=0.047 Sum_probs=172.0
Q ss_pred EEEEcCCeEEEEECCCCcEEEEeeCC-----------------------------CCCcEEEEEEcCCCCEEEEEe-CCC
Q 011916 182 LAVGLGTCVYLWTASNSKVTRLCDLG-----------------------------PGDSVCSVQWTREGSYISVGT-NLG 231 (475)
Q Consensus 182 la~~~~~~V~lw~~~~~~~~~~~~~~-----------------------------~~~~V~~v~~spdg~~la~g~-~dg 231 (475)
++++.+|.|.+|++.+++.++.+..- |.........+|||++|++.. .++
T Consensus 15 ~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~~ 94 (441)
T d1qnia2 15 WSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKANT 94 (441)
T ss_dssp EECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTTT
T ss_pred EeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCCC
Confidence 34556899999999999888776430 112344455578999997765 578
Q ss_pred eEEEEECCCCeeeEEec-CCCCceEEEEeC--CC--EEEEEeCCC-----------------cEEEEECCCCCccEEEec
Q 011916 232 QVQVWDGTQCKRVRTFG-GHQTRAGVLAWN--SR--ILSSGSRDR-----------------NILQHDLRVSSDYICKLA 289 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~--~l~sgs~dg-----------------~I~iwd~~~~~~~~~~~~ 289 (475)
.|.++|+.+++....+. .+......+++. |+ +++..+.+. .+..+|..+ .....++.
T Consensus 95 rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t-~~v~~qI~ 173 (441)
T d1qnia2 95 RVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAET-MDVAWQVI 173 (441)
T ss_dssp EEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTT-CSEEEEEE
T ss_pred EEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcc-ceeeEEEe
Confidence 99999999999888775 356677888884 54 455444432 124466653 23333332
Q ss_pred CccCCEEEEEEcCCCCEEEEEeCC-----------------------------------------CcEEEEECCCCceeE
Q 011916 290 GHKSEVCGLKWSHDDRELASGGND-----------------------------------------NQLLVWNQHSQQPTL 328 (475)
Q Consensus 290 ~h~~~V~~l~~s~~~~~lasg~~D-----------------------------------------g~I~iwd~~~~~~~~ 328 (475)
. .+....+.|+|+|+++++.+.+ +.+.|++....+.+.
T Consensus 174 v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~ 252 (441)
T d1qnia2 174 V-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTR 252 (441)
T ss_dssp E-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEE
T ss_pred c-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEE
Confidence 2 2456789999999998887643 334444444445555
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce------------eeeecCCCCeeEEEEcCCCCeEEEE
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ------------LNSVDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~------------~~~~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
.+..... ...+.++|||+++++++. .+++|.+||+.+... ....+.+-.....+|.++|..+.+
T Consensus 253 ~IPvgks-PhGv~vSPDGkyl~~~~~--~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts- 328 (441)
T d1qnia2 253 YIPVPKN-PHGLNTSPDGKYFIANGK--LSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTT- 328 (441)
T ss_dssp EECCBSS-CCCEEECTTSCEEEEECT--TSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEE-
T ss_pred EEeCCCC-ccCceECCCCCEEEEeCC--cCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEc-
Confidence 5555443 578999999999999866 999999999865321 111122223455689998866555
Q ss_pred EecCCCeEEEEECCC----------CceEEEe-----cCCCcceEEEEECCCCCEEEEE---eCCC
Q 011916 397 HGYSQNQIMVWKYPS----------MAKVSTL-----TGHSLRVLYLATSPDGQTIVTG---AGDE 444 (475)
Q Consensus 397 ~g~~dg~I~iwd~~~----------~~~~~~l-----~~h~~~V~~l~~spdg~~l~s~---s~Dg 444 (475)
.+-|.+|..|++.. ...+..+ .+|...+.+.+++|||++|+++ +.|.
T Consensus 329 -~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr 393 (441)
T d1qnia2 329 -LFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDR 393 (441)
T ss_dssp -ETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGG
T ss_pred -ccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCcccccc
Confidence 78999999999741 1233333 4677777777899999999999 5554
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.32 E-value=6.9e-10 Score=106.88 Aligned_cols=272 Identities=8% Similarity=0.033 Sum_probs=160.1
Q ss_pred EEEEEc--CCeEEEE--ECCCCcEE--EEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeeeEEec-CCCC
Q 011916 181 VLAVGL--GTCVYLW--TASNSKVT--RLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQ-CKRVRTFG-GHQT 252 (475)
Q Consensus 181 ~la~~~--~~~V~lw--~~~~~~~~--~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~-~~~~~~~~-~h~~ 252 (475)
|+.++- ++.|+++ |.+++++. ..........+..|+|++++++|++... +.+..|.+.. +....... ....
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~ 83 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG 83 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence 455543 4567555 45555543 2333344556778999999999988765 5677777653 22222111 1111
Q ss_pred ceEEEEe--CCCE--EEEEe-CCCcEEEEEC------------CCCCccE----EEecCccCCEEEEEEcCCCCEEEEEe
Q 011916 253 RAGVLAW--NSRI--LSSGS-RDRNILQHDL------------RVSSDYI----CKLAGHKSEVCGLKWSHDDRELASGG 311 (475)
Q Consensus 253 ~v~~l~~--~~~~--l~sgs-~dg~I~iwd~------------~~~~~~~----~~~~~h~~~V~~l~~s~~~~~lasg~ 311 (475)
....+++ +++. +++.. ..++|..+.+ ....... .........+.++.|+|||+++++++
T Consensus 84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d 163 (365)
T d1jofa_ 84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD 163 (365)
T ss_dssp SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence 2222333 3432 22221 2344444333 2111111 11112233578999999999888876
Q ss_pred C-CCcEEEEECCCCceeE---EEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceee--ee---c----
Q 011916 312 N-DNQLLVWNQHSQQPTL---RLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLN--SV---D---- 376 (475)
Q Consensus 312 ~-Dg~I~iwd~~~~~~~~---~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~--~~---~---- 376 (475)
. ...|.+|+......+. ... ........++|+|++++++++.. .+++|.+|++..+.... .. .
T Consensus 164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e--~~~~V~v~~~~~~~~~~~~~~~~~~~~~~ 241 (365)
T d1jofa_ 164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALME--AGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEET--TTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEecc--CCCEEEEEEecCCCceEEEEeeeeccccc
Confidence 4 3578888765432221 111 23456889999999998888875 89999999987654321 11 1
Q ss_pred -----------CCCCeeEEEEcCCCCeEEEEEecC----CCeEEEEECCCCceEEEe------cCCCcceEEEEECC-CC
Q 011916 377 -----------TGSQVCNLAWSKNVNELVSTHGYS----QNQIMVWKYPSMAKVSTL------TGHSLRVLYLATSP-DG 434 (475)
Q Consensus 377 -----------~~~~v~~l~~s~~~~~l~~~~g~~----dg~I~iwd~~~~~~~~~l------~~h~~~V~~l~~sp-dg 434 (475)
.......+.++|+|++|+++.... ...|..|++.....+... ........+++++| +|
T Consensus 242 ~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G 321 (365)
T d1jofa_ 242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD 321 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred cccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCC
Confidence 011356789999999999864322 234777877654322211 12234567799998 89
Q ss_pred CEEEEEe-CCCCEEEEecCCCC
Q 011916 435 QTIVTGA-GDETLRFWNVFPSL 455 (475)
Q Consensus 435 ~~l~s~s-~Dg~I~iW~~~~~~ 455 (475)
++|+++. .++.|.+|++....
T Consensus 322 ~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 322 EWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp TEEEEECSSSCEEEEEEEETTE
T ss_pred CEEEEEeCCCCeEEEEEEeCCc
Confidence 9887775 57899999987553
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.31 E-value=3.7e-10 Score=110.07 Aligned_cols=226 Identities=9% Similarity=0.043 Sum_probs=159.9
Q ss_pred EEEEeCCCeEEEEECCCCeeeEEecC------------------------------CCCceEEE--EeCCCEEEEE-eCC
Q 011916 224 ISVGTNLGQVQVWDGTQCKRVRTFGG------------------------------HQTRAGVL--AWNSRILSSG-SRD 270 (475)
Q Consensus 224 la~g~~dg~v~iwd~~~~~~~~~~~~------------------------------h~~~v~~l--~~~~~~l~sg-s~d 270 (475)
+++|+.+|.|.||++.+++.++.+.. |....... ..+|++|++. ..+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~ 93 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN 93 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence 56677899999999999988877532 11122222 2367777555 578
Q ss_pred CcEEEEECCCCCccEEEe-cCccCCEEEEEEcCCCC--EEEEEeCCC-----------------cEEEEECCCCceeEEE
Q 011916 271 RNILQHDLRVSSDYICKL-AGHKSEVCGLKWSHDDR--ELASGGNDN-----------------QLLVWNQHSQQPTLRL 330 (475)
Q Consensus 271 g~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~s~~~~--~lasg~~Dg-----------------~I~iwd~~~~~~~~~~ 330 (475)
..|.++|++ ..+....+ ..+...+.++.|+|+|+ +++..+.+. .+..+|..+.+...++
T Consensus 94 ~rVavIDl~-t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 94 TRVARIRLD-IMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp TEEEEEETT-TTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred CEEEEEECC-CCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 899999998 44444443 34677899999999998 555544432 2355888888777666
Q ss_pred eccccceeEEEECCCCCcEEEEecCCC--------------------------------------CCeEEEEECCCCcee
Q 011916 331 TEHTAAVKAIAWSPHQSSLLASGGGTA--------------------------------------DRCIRFWNTSNGHQL 372 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~~~ll~sg~Gs~--------------------------------------d~~I~iwd~~~~~~~ 372 (475)
.. ......++|+|+|+++++++.++. ++.+.+++..+...+
T Consensus 173 ~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~ 251 (441)
T d1qnia2 173 IV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFT 251 (441)
T ss_dssp EE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSE
T ss_pred ec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceE
Confidence 54 345789999999999888764221 345556666666677
Q ss_pred eeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceE-----------EEecCCCcceEEEEECCCCCEEEEEe
Q 011916 373 NSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKV-----------STLTGHSLRVLYLATSPDGQTIVTGA 441 (475)
Q Consensus 373 ~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~-----------~~l~~h~~~V~~l~~spdg~~l~s~s 441 (475)
..+..+.....+.++|||++++++ |..++.|.+||+.+.... ..-....-.....+|.++|..+.+..
T Consensus 252 ~~IPvgksPhGv~vSPDGkyl~~~-~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~ 330 (441)
T d1qnia2 252 RYIPVPKNPHGLNTSPDGKYFIAN-GKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLF 330 (441)
T ss_dssp EEECCBSSCCCEEECTTSCEEEEE-CTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEET
T ss_pred EEEeCCCCccCceECCCCCEEEEe-CCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccc
Confidence 777777778899999999999876 788999999998653321 11111112246678999998888889
Q ss_pred CCCCEEEEecC
Q 011916 442 GDETLRFWNVF 452 (475)
Q Consensus 442 ~Dg~I~iW~~~ 452 (475)
.|..|..|++.
T Consensus 331 ~ds~v~kw~~~ 341 (441)
T d1qnia2 331 IDSQVCKWNIA 341 (441)
T ss_dssp TTTEEEEEEHH
T ss_pred ccceEEEeccc
Confidence 99999999985
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=1.1e-08 Score=93.10 Aligned_cols=238 Identities=12% Similarity=0.078 Sum_probs=157.9
Q ss_pred eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEECCCCeeeEEecCCCCceEEEEeC--CCE
Q 011916 189 CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLG---QVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRI 263 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg---~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~ 263 (475)
.|+|.|........+.. ....+.+.+|||||+.||...... .+.+.+...+... .+..+........|+ +..
T Consensus 20 ~l~i~d~dG~~~~~l~~--~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHR--SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETTSCSCEEEEE--ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCCCCCcEEEec--CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCe
Confidence 58898988877777764 467788999999999999876543 4666676655543 444566777778884 555
Q ss_pred EEEEe-CCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe-CCC--cEEEEECCCCceeEEEeccccceeE
Q 011916 264 LSSGS-RDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG-NDN--QLLVWNQHSQQPTLRLTEHTAAVKA 339 (475)
Q Consensus 264 l~sgs-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~-~Dg--~I~iwd~~~~~~~~~~~~h~~~v~~ 339 (475)
++... .++...++.......................+++++..++..+ .++ .|.+.++..+.. ..+..+......
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEE
T ss_pred eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccc-eeeecccccccc
Confidence 55544 4444444444333344444445555566677888777555543 444 466666666543 344456677788
Q ss_pred EEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEec-CCCeEEEEECCCCceEEEe
Q 011916 340 IAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGY-SQNQIMVWKYPSMAKVSTL 418 (475)
Q Consensus 340 l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~-~dg~I~iwd~~~~~~~~~l 418 (475)
..|+|++..++..........|.+.+...+.. ..+..........|+|||+.|+.++.. ....|+++++.... ...+
T Consensus 176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~-~~~l 253 (269)
T d2hqsa1 176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRF-KARL 253 (269)
T ss_dssp EEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCC-EEEC
T ss_pred cccccccceeEEEeecCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEE
Confidence 89999999888876522334566666665544 344445566788999999999875322 23468999987655 4567
Q ss_pred cCCCcceEEEEECC
Q 011916 419 TGHSLRVLYLATSP 432 (475)
Q Consensus 419 ~~h~~~V~~l~~sp 432 (475)
....+.+...+|||
T Consensus 254 t~~~g~~~~p~WSP 267 (269)
T d2hqsa1 254 PATDGQVKFPAWSP 267 (269)
T ss_dssp CCSSSEEEEEEECC
T ss_pred eCCCCcEEeEEeCC
Confidence 77778888999998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.23 E-value=2.8e-10 Score=113.27 Aligned_cols=136 Identities=13% Similarity=0.112 Sum_probs=104.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec-----CCCCceEEEEe--CCCEEEEEeC---------CCcEEEE
Q 011916 213 CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG-----GHQTRAGVLAW--NSRILSSGSR---------DRNILQH 276 (475)
Q Consensus 213 ~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~-----~h~~~v~~l~~--~~~~l~sgs~---------dg~I~iw 276 (475)
..+.|.++++++.. .+|.|.+||+.+++....+. .|...|.++.| ++++|+.++. ++.+.+|
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence 36789999987764 57889999999998876554 44567888888 5788887743 5678999
Q ss_pred ECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec------------------ccccee
Q 011916 277 DLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE------------------HTAAVK 338 (475)
Q Consensus 277 d~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~------------------h~~~v~ 338 (475)
|+.. + ....+..|...+..+.|||||+.||... ++.+++|+..+++....... ..+...
T Consensus 98 d~~~-~-~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~ 174 (470)
T d2bgra1 98 DLNK-R-QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS 174 (470)
T ss_dssp ETTT-T-EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred ECCC-C-cccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence 9983 3 3556788899999999999999999965 57899999998876543322 123346
Q ss_pred EEEECCCCCcEEEEe
Q 011916 339 AIAWSPHQSSLLASG 353 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg 353 (475)
.+.|+|||+.|+...
T Consensus 175 ~~~wSPDGk~ia~~~ 189 (470)
T d2bgra1 175 ALWWSPNGTFLAYAQ 189 (470)
T ss_dssp CEEECTTSSEEEEEE
T ss_pred ccEECCCCCccceeE
Confidence 788999999887764
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.21 E-value=1.2e-08 Score=95.24 Aligned_cols=227 Identities=10% Similarity=0.053 Sum_probs=157.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
...+..+++.|||+++++...+++|..|+.... ...+......+.++++ +++++++...++.+..++.........
T Consensus 27 ~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 27 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccccee
Confidence 346889999999999999999999988885543 3334455677888988 578888888888888888764333333
Q ss_pred Ee--cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEec----------cccceeEEEECCCCCcEEEEec
Q 011916 287 KL--AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTE----------HTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 287 ~~--~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~----------h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
.+ .........+.+.++++++++.+.++.+..+|...+........ .......+.+. +..++.+..
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence 22 23455688999999999999888889999999887654322211 11234556554 455777654
Q ss_pred CCCCCeEEEEECCCCceeee---ecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCc-eEEEecCCCcceEEEEE
Q 011916 355 GTADRCIRFWNTSNGHQLNS---VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMA-KVSTLTGHSLRVLYLAT 430 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~~~---~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~-~~~~l~~h~~~V~~l~~ 430 (475)
..+.|..++......... .........+++.++|+.+++ ...++.|..++..... .+......-...++++|
T Consensus 183 --~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va--~~~~~~V~~i~p~G~~~~~~~~~~~~~~pt~vaf 258 (302)
T d2p4oa1 183 --EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGA--THIYNSVVRIAPDRSTTIIAQAEQGVIGSTAVAF 258 (302)
T ss_dssp --TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEE--CBTTCCEEEECTTCCEEEEECGGGTCTTEEEEEE
T ss_pred --CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEE--EcCCCcEEEECCCCCEEEEEecCCCCCCceEEEE
Confidence 789999998776543322 223455678999999997776 6678889998765322 22333334456899999
Q ss_pred ---CCCCCEEEEEeCC
Q 011916 431 ---SPDGQTIVTGAGD 443 (475)
Q Consensus 431 ---spdg~~l~s~s~D 443 (475)
++|++.|+.++..
T Consensus 259 g~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 259 GQTEGDCTAIYVVTNG 274 (302)
T ss_dssp CCSTTTTTEEEEEECT
T ss_pred cCCCCCCCEEEEECCC
Confidence 6788888766544
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=2.6e-08 Score=90.50 Aligned_cols=227 Identities=15% Similarity=0.099 Sum_probs=145.0
Q ss_pred eEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeC-CC--cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCE
Q 011916 232 QVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSR-DR--NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRE 306 (475)
Q Consensus 232 ~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~-dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 306 (475)
.|.|.|.. |...+.+..+...+...+| +|+.|+.... .+ .+.+.+.. ......+..+........|+|+|..
T Consensus 20 ~l~i~d~d-G~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~spdg~~ 96 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA--NGAVRQVASFPRHNGAPAFSPDGSK 96 (269)
T ss_dssp EEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT--TCCEEEEECCSSCEEEEEECTTSSE
T ss_pred EEEEEcCC-CCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecc--cCceeEEeeeecccccceecCCCCe
Confidence 46777765 4444444445667888889 5778776543 33 35555554 4455566678888999999999998
Q ss_pred EEEEeC-CCc--EEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeE
Q 011916 307 LASGGN-DNQ--LLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCN 383 (475)
Q Consensus 307 lasg~~-Dg~--I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~ 383 (475)
++.... ++. +..+...... ...............+++++..++.+........|.+.++..+..............
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~ 175 (269)
T d2hqsa1 97 LAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQD 175 (269)
T ss_dssp EEEEECTTSSCEEEEEETTTCC-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEE
T ss_pred eeEeeecCCccceeeccccccc-ceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccc
Confidence 887654 333 3333333332 223333445556677888888777776422234577778777766666666677788
Q ss_pred EEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeC---CCCEEEEecCCCCCCCCc
Q 011916 384 LAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAG---DETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 384 l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~---Dg~I~iW~~~~~~~~~~~ 460 (475)
..|+|+++.++... ...+...+|.+........+..+........|||||+.|+-.+. ...|+++++..+...+..
T Consensus 176 ~~~spdg~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt 254 (269)
T d2hqsa1 176 ADVSSDGKFMVMVS-SNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 254 (269)
T ss_dssp EEECTTSSEEEEEE-ECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred cccccccceeEEEe-ecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEe
Confidence 89999999998863 34444444444333323344556667788899999999885543 356899999887655544
Q ss_pred ccC
Q 011916 461 VKD 463 (475)
Q Consensus 461 ~~~ 463 (475)
...
T Consensus 255 ~~~ 257 (269)
T d2hqsa1 255 ATD 257 (269)
T ss_dssp CSS
T ss_pred CCC
Confidence 333
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.13 E-value=1e-07 Score=87.52 Aligned_cols=234 Identities=15% Similarity=0.215 Sum_probs=162.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCC------CCceEEEEe--C-CCEEEE-EeCCCcEEEEECCC
Q 011916 211 SVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH------QTRAGVLAW--N-SRILSS-GSRDRNILQHDLRV 280 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h------~~~v~~l~~--~-~~~l~s-gs~dg~I~iwd~~~ 280 (475)
....|+++++|+++++-..+..|++||.+ ++.+..+... ...-..+++ + +..+++ .+.++.|..++..
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~- 101 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY- 101 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence 46899999999988877778899999955 6666666321 112334444 2 233333 3345567676654
Q ss_pred CCccEEEe-cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEecCCC
Q 011916 281 SSDYICKL-AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTA 357 (475)
Q Consensus 281 ~~~~~~~~-~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~ 357 (475)
+.....+ ........++++.++|+++++....+.+.+++.. ++.+..+. .+......+++.+++. ++++.. .
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~-i~v~d~--~ 176 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQE-IFISDN--R 176 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSE-EEEEEG--G
T ss_pred -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccccccceeeecccee-EEeeec--c
Confidence 4444444 2345667899999999988888777888888864 45555553 3556778899999887 565554 6
Q ss_pred CCeEEEEECCCCceeeeecC---CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC--CCcceEEEEECC
Q 011916 358 DRCIRFWNTSNGHQLNSVDT---GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--HSLRVLYLATSP 432 (475)
Q Consensus 358 d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--h~~~V~~l~~sp 432 (475)
.+.|++||. +++.+..+.. ......+++.++|+.+++- ...++.|.+|+ ++++.+.++.. .......|++.+
T Consensus 177 ~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad-~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 177 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIAD-NHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEE-CSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEET
T ss_pred ccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEE-CCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeC
Confidence 889999996 5677777743 2357889999999866652 23455799998 56777766643 334678999999
Q ss_pred CCCEEEEEeCCCCEEEEecCCCC
Q 011916 433 DGQTIVTGAGDETLRFWNVFPSL 455 (475)
Q Consensus 433 dg~~l~s~s~Dg~I~iW~~~~~~ 455 (475)
||.+++ ++.+..|++|+.....
T Consensus 254 dG~l~V-~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 254 DGSVVL-ASKDYRLYIYRYVQLA 275 (279)
T ss_dssp TTEEEE-EETTTEEEEEECSCCC
T ss_pred CCcEEE-EeCCCeEEEEEeeeec
Confidence 997555 5678999999987654
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.10 E-value=1.8e-07 Score=87.75 Aligned_cols=228 Identities=11% Similarity=0.107 Sum_probs=151.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCC--CcEEEEECCCCCcc
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRD--RNILQHDLRVSSDY 284 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~d--g~I~iwd~~~~~~~ 284 (475)
...+..++|.++|++.++-...|.|..|+.++.+....+.........++++ |+++++...+ ....++.+......
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCce
Confidence 3455789999999977777788999999988877666665566677888884 5666655332 23333333322322
Q ss_pred EEEecCc---cCCEEEEEEcCCCCEEEEEeC------CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecC
Q 011916 285 ICKLAGH---KSEVCGLKWSHDDRELASGGN------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGG 355 (475)
Q Consensus 285 ~~~~~~h---~~~V~~l~~s~~~~~lasg~~------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~G 355 (475)
+.....+ ......+++.++|++.++... .+.+..++.... .+..+...-...+.|+|+|+++.|+++-.
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~- 196 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTET- 196 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEG-
T ss_pred eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecc-
Confidence 2222222 234788999999987766432 123555555433 33333333445688999999998888765
Q ss_pred CCCCeEEEEECCCC-ceeeee--------cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec------C
Q 011916 356 TADRCIRFWNTSNG-HQLNSV--------DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT------G 420 (475)
Q Consensus 356 s~d~~I~iwd~~~~-~~~~~~--------~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~------~ 420 (475)
..+.|..|++... ...... ........+++..+|+..++ ....+.|.+|| +.++.+..+. +
T Consensus 197 -~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va--~~~~g~V~~~~-p~G~~l~~i~~P~~~~~ 272 (319)
T d2dg1a1 197 -TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVA--MYGQGRVLVFN-KRGYPIGQILIPGRDEG 272 (319)
T ss_dssp -GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEE--EETTTEEEEEC-TTSCEEEEEECTTGGGT
T ss_pred -cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEE--EcCCCEEEEEC-CCCcEEEEEeCCCcCCC
Confidence 7899999997642 221111 11233678999999997777 66789999999 5788887775 3
Q ss_pred CCcceEEEEECCCCCEEEEEeC
Q 011916 421 HSLRVLYLATSPDGQTIVTGAG 442 (475)
Q Consensus 421 h~~~V~~l~~spdg~~l~s~s~ 442 (475)
+...+++++|.+++..+++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 273 HMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp CSCBCCEEEECTTSCEEEEEEE
T ss_pred cCceeeeEEEeCCCCEEEEEcC
Confidence 4456889999998877776554
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.08 E-value=6e-08 Score=88.20 Aligned_cols=235 Identities=11% Similarity=-0.002 Sum_probs=146.4
Q ss_pred CcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEE
Q 011916 210 DSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYIC 286 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~ 286 (475)
-.-.+|++.++|+..++.. ..+.+..++............-......+++ +++++++....+.+.+++-. ....+.
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~-~~~~~~ 92 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS-NNQTVL 92 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTC-SCCEEC
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeec-cceeee
Confidence 4568999999999666654 4577777765543322222121223455666 46666666555555555433 222221
Q ss_pred EecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEEC
Q 011916 287 KLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNT 366 (475)
Q Consensus 287 ~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~ 366 (475)
.........++++.++++++++-...+.+.+++..................++++.+++. ++++.. .++.|..+|.
T Consensus 93 -~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-~~v~~~--~~~~i~~~d~ 168 (260)
T d1rwia_ 93 -PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDT--DNNRVVKLEA 168 (260)
T ss_dssp -CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCC-EEEEEG--GGTEEEEECT
T ss_pred -eeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCC-Eeeecc--cccccccccc
Confidence 122235678999999998887776667788877665433222112234567899999988 555543 6788999998
Q ss_pred CCCceeeee-cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCC
Q 011916 367 SNGHQLNSV-DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDET 445 (475)
Q Consensus 367 ~~~~~~~~~-~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~ 445 (475)
......... ........+++.++|+.+++ ....+.|..++.............-.....|+++++|.++++-..++.
T Consensus 169 ~~~~~~~~~~~~~~~p~gi~~d~~g~l~vs--d~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~r 246 (260)
T d1rwia_ 169 ESNNQVVLPFTDITAPWGIAVDEAGTVYVT--EHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR 246 (260)
T ss_dssp TTCCEEECCCSSCCSEEEEEECTTCCEEEE--ETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTE
T ss_pred ccceeeeeeccccCCCccceeeeeeeeeee--ecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCE
Confidence 765444332 33456789999999987776 677888888876544322222223356789999999998887666776
Q ss_pred EEEEec
Q 011916 446 LRFWNV 451 (475)
Q Consensus 446 I~iW~~ 451 (475)
|+..+.
T Consensus 247 I~~i~~ 252 (260)
T d1rwia_ 247 VVKLTS 252 (260)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 655443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.05 E-value=1.4e-07 Score=88.21 Aligned_cols=234 Identities=9% Similarity=0.063 Sum_probs=153.5
Q ss_pred cEEEEEEcCCCCEEEEEeC-------CCeEEEEECCCCeeeEEecC----CCCceEEEEeC--CCEEEEEeCCCcEEEEE
Q 011916 211 SVCSVQWTREGSYISVGTN-------LGQVQVWDGTQCKRVRTFGG----HQTRAGVLAWN--SRILSSGSRDRNILQHD 277 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~-------dg~v~iwd~~~~~~~~~~~~----h~~~v~~l~~~--~~~l~sgs~dg~I~iwd 277 (475)
....++|.++|+++++... +|.|..||..++........ ....-..++++ ++.|+++.....|...|
T Consensus 19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEe
Confidence 4567899999997776433 46799999888765443321 12234567885 57788887777788888
Q ss_pred CCCCCccEEEecC-cc----CCEEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCceeEEEeccccce
Q 011916 278 LRVSSDYICKLAG-HK----SEVCGLKWSHDDRELASGGN---------------DNQLLVWNQHSQQPTLRLTEHTAAV 337 (475)
Q Consensus 278 ~~~~~~~~~~~~~-h~----~~V~~l~~s~~~~~lasg~~---------------Dg~I~iwd~~~~~~~~~~~~h~~~v 337 (475)
.... ....+.. .. .....+++.++|++.++-.. +|.|+.++.. ++.. .+...-...
T Consensus 99 ~~g~--~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~-~~~~~~~~p 174 (314)
T d1pjxa_ 99 TDGT--FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFP 174 (314)
T ss_dssp TTSC--EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEESSE
T ss_pred CCCc--EEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Ccee-EeeCCccee
Confidence 7632 2221111 11 13577899999988776421 2345555443 3322 222333445
Q ss_pred eEEEECCCCC----cEEEEecCCCCCeEEEEECCCCceeee------ecC--CCCeeEEEEcCCCCeEEEEEecCCCeEE
Q 011916 338 KAIAWSPHQS----SLLASGGGTADRCIRFWNTSNGHQLNS------VDT--GSQVCNLAWSKNVNELVSTHGYSQNQIM 405 (475)
Q Consensus 338 ~~l~~sp~~~----~ll~sg~Gs~d~~I~iwd~~~~~~~~~------~~~--~~~v~~l~~s~~~~~l~~~~g~~dg~I~ 405 (475)
+.++|+|++. .|+++.. ..+.|..||+.....+.. +.. ......+++..+|+..++ ....+.|.
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~--~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa--~~~~g~I~ 250 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAET--PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVA--NWGSSHIE 250 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEET--TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEE--EETTTEEE
T ss_pred eeeEECCCCCcceeEEEEEee--cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEE--EcCCCEEE
Confidence 7899998765 4666654 788999998764333221 111 123567999999998777 55689999
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCCCCE-EEEEeCCCCEEEEecC
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQT-IVTGAGDETLRFWNVF 452 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~-l~s~s~Dg~I~iW~~~ 452 (475)
+||...++.+..+......+++++|.+|++. ++|.+.++.|...++.
T Consensus 251 ~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~ 298 (314)
T d1pjxa_ 251 VFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence 9998888777777766678899999999974 4666677877777764
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.00 E-value=1.4e-07 Score=85.57 Aligned_cols=243 Identities=11% Similarity=0.028 Sum_probs=149.4
Q ss_pred eccCCCCCCCCceeEEecCCC-CEEEEEc--CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 011916 159 VLDAPSLQDDFYLNLVDWSSQ-NVLAVGL--GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQV 235 (475)
Q Consensus 159 ~l~~p~~~~d~~v~~l~ws~~-~~la~~~--~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~i 235 (475)
+|...++........++++++ +++.+.. .+.+..++.......... .........++++++|+++++....+.+++
T Consensus 4 ~~~~~~~~~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~gvav~~~g~i~v~d~~~~~i~~ 82 (260)
T d1rwia_ 4 VLPFTGIDFRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-FNGLYQPQGLAVDGAGTVYVTDFNNRVVTL 82 (260)
T ss_dssp ECCCCSCCSCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC-CCSCCSCCCEEECTTCCEEEEETTTEEEEE
T ss_pred EEecccCCCcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec-cCCccCceEEEEcCCCCEEEeeeeeceeee
Confidence 344444444455677888876 5555433 456666665544433322 232345678899999998777777667777
Q ss_pred EECCCCeeeEEecCCCCceEEEEeC--CCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC
Q 011916 236 WDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND 313 (475)
Q Consensus 236 wd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D 313 (475)
++-.+...+....+ ......++++ ++++++-..+..+..++........ ..........+++++++++++++...+
T Consensus 83 ~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~~~v~~~~~ 160 (260)
T d1rwia_ 83 AAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-LPFTGLNDPDGVAVDNSGNVYVTDTDN 160 (260)
T ss_dssp CTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE-CCCCSCCSCCEEEECTTCCEEEEEGGG
T ss_pred eeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeee-eeecccCCcceeeecCCCCEeeecccc
Confidence 66555544433322 3456778874 5666666666667777765322211 111223456789999999988888888
Q ss_pred CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee-cCCCCeeEEEEcCCCCe
Q 011916 314 NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV-DTGSQVCNLAWSKNVNE 392 (475)
Q Consensus 314 g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~-~~~~~v~~l~~s~~~~~ 392 (475)
+.|..+|.............-.....|++.++|. |+++.. ..+.|..++.......... ..-.....|+++++|+.
T Consensus 161 ~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~--~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l 237 (260)
T d1rwia_ 161 NRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEH--NTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTV 237 (260)
T ss_dssp TEEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEET--TTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCE
T ss_pred ccccccccccceeeeeeccccCCCccceeeeeee-eeeeec--CCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCE
Confidence 8999999876543332223445678999999987 666654 6788888876544322221 22256789999999876
Q ss_pred EEEEEecCCCeEEEEEC
Q 011916 393 LVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 393 l~~~~g~~dg~I~iwd~ 409 (475)
+++ ...++.|+.++.
T Consensus 238 ~va--d~~~~rI~~i~~ 252 (260)
T d1rwia_ 238 YVA--DRGNDRVVKLTS 252 (260)
T ss_dssp EEE--EGGGTEEEEECC
T ss_pred EEE--ECCCCEEEEEeC
Confidence 665 555676765553
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.93 E-value=3.2e-07 Score=87.69 Aligned_cols=239 Identities=7% Similarity=-0.042 Sum_probs=144.0
Q ss_pred EEecCCC-CEEEEEcCCeEEEEECCCC-cEEEEeeCCCCCcEEEEEEcCCCCEEEEEe---CCCeEEEEECCC-Ceee--
Q 011916 173 LVDWSSQ-NVLAVGLGTCVYLWTASNS-KVTRLCDLGPGDSVCSVQWTREGSYISVGT---NLGQVQVWDGTQ-CKRV-- 244 (475)
Q Consensus 173 ~l~ws~~-~~la~~~~~~V~lw~~~~~-~~~~~~~~~~~~~V~~v~~spdg~~la~g~---~dg~v~iwd~~~-~~~~-- 244 (475)
-|+++++ +.+.+...+.+..|.+... ................++++++++.+.+.. ..+.|..+.+.. +...
T Consensus 44 ~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~ 123 (365)
T d1jofa_ 44 WMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNV 123 (365)
T ss_dssp EEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEE
T ss_pred EEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCccee
Confidence 4777876 5666666677777776543 333322212234456778888888543332 235565554321 1110
Q ss_pred ----------E---E-ecCCCCceEEEEe--CCCEEEEEeC-CCcEEEEECCCCCccEE--E--ecCccCCEEEEEEcCC
Q 011916 245 ----------R---T-FGGHQTRAGVLAW--NSRILSSGSR-DRNILQHDLRVSSDYIC--K--LAGHKSEVCGLKWSHD 303 (475)
Q Consensus 245 ----------~---~-~~~h~~~v~~l~~--~~~~l~sgs~-dg~I~iwd~~~~~~~~~--~--~~~h~~~V~~l~~s~~ 303 (475)
. . -......+.++.| +++++++++. ...|.+|++...+.... . ..........+.|+|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pd 203 (365)
T d1jofa_ 124 FSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPT 203 (365)
T ss_dssp EEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTT
T ss_pred EeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCC
Confidence 0 0 1112234678888 4677777654 45788888764443321 1 1223457889999999
Q ss_pred CCEEEEEe-CCCcEEEEECCCCceeEEEe-------------------ccccceeEEEECCCCCcEEEEecCC---CCCe
Q 011916 304 DRELASGG-NDNQLLVWNQHSQQPTLRLT-------------------EHTAAVKAIAWSPHQSSLLASGGGT---ADRC 360 (475)
Q Consensus 304 ~~~lasg~-~Dg~I~iwd~~~~~~~~~~~-------------------~h~~~v~~l~~sp~~~~ll~sg~Gs---~d~~ 360 (475)
++++.+.. .+++|.+|++.......... .+......+.++|+|++|+++..+. ....
T Consensus 204 g~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~ 283 (365)
T d1jofa_ 204 GNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGY 283 (365)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCE
T ss_pred CceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceE
Confidence 99886655 57899999987654322111 1122356789999999988875421 1234
Q ss_pred EEEEECCCCceeee-------ecCCCCeeEEEEcC-CCCeEEEEEecCCCeEEEEECCCC
Q 011916 361 IRFWNTSNGHQLNS-------VDTGSQVCNLAWSK-NVNELVSTHGYSQNQIMVWKYPSM 412 (475)
Q Consensus 361 I~iwd~~~~~~~~~-------~~~~~~v~~l~~s~-~~~~l~~~~g~~dg~I~iwd~~~~ 412 (475)
|..|++.....+.. ...+.....++++| +|++|+++ +..++.|.+|++...
T Consensus 284 i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va-~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 284 IAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAIT-DDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEE-CSSSCEEEEEEEETT
T ss_pred EEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEE-eCCCCeEEEEEEeCC
Confidence 77777654322221 12355678899998 78888875 667899999987543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.87 E-value=4e-06 Score=76.50 Aligned_cols=231 Identities=13% Similarity=0.185 Sum_probs=153.0
Q ss_pred eEEecCCC-CEEEEE-cCCeEEEEECCCCcEEEEeeC-C----CCCcEEEEEEcCCC-CEEEEE-eCCCeEEEEECCCCe
Q 011916 172 NLVDWSSQ-NVLAVG-LGTCVYLWTASNSKVTRLCDL-G----PGDSVCSVQWTREG-SYISVG-TNLGQVQVWDGTQCK 242 (475)
Q Consensus 172 ~~l~ws~~-~~la~~-~~~~V~lw~~~~~~~~~~~~~-~----~~~~V~~v~~spdg-~~la~g-~~dg~v~iwd~~~~~ 242 (475)
..++.+++ +++.+. .++.|.+||.+ ++.+..+.. . .......+++..+. .++++. +.++.|.+++. .++
T Consensus 26 ~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~g~ 103 (279)
T d1q7fa_ 26 SGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQ 103 (279)
T ss_dssp EEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSC
T ss_pred cEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-ccc
Confidence 44666665 555553 36789999865 554444421 1 11234566666654 444433 34567777775 466
Q ss_pred eeEEec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEe--cCccCCEEEEEEcCCCCEEEEEeCCCcEE
Q 011916 243 RVRTFG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKL--AGHKSEVCGLKWSHDDRELASGGNDNQLL 317 (475)
Q Consensus 243 ~~~~~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~~~~~lasg~~Dg~I~ 317 (475)
....+. ........++. ++.++++....+.+.+++.. +..+..+ ..+......+++.++++.+++....+.|+
T Consensus 104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~--g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~ 181 (279)
T d1q7fa_ 104 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN--GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK 181 (279)
T ss_dssp EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC--CceeecccccccccccceeeeccceeEEeeecccccee
Confidence 666654 33445566776 46777777777778888764 4444443 44567788999999999888888889999
Q ss_pred EEECCCCceeEEEe--ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecC---CCCeeEEEEcCCCCe
Q 011916 318 VWNQHSQQPTLRLT--EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDT---GSQVCNLAWSKNVNE 392 (475)
Q Consensus 318 iwd~~~~~~~~~~~--~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~---~~~v~~l~~s~~~~~ 392 (475)
+||.. ++.+.++. +.......|++.++|. ++++.. ..++.|.+|+ .+|+.+..+.. ......+++.++|..
T Consensus 182 ~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~-~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l 257 (279)
T d1q7fa_ 182 VFNYE-GQYLRQIGGEGITNYPIGVGINSNGE-ILIADN-HNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSV 257 (279)
T ss_dssp EEETT-CCEEEEESCTTTSCSEEEEEECTTCC-EEEEEC-SSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEE
T ss_pred eeecC-CceeeeecccccccCCcccccccCCe-EEEEEC-CCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcE
Confidence 99975 45566653 2344578999999998 555432 1356799998 56887777643 346889999999975
Q ss_pred EEEEEecCCCeEEEEECCCCc
Q 011916 393 LVSTHGYSQNQIMVWKYPSMA 413 (475)
Q Consensus 393 l~~~~g~~dg~I~iwd~~~~~ 413 (475)
+++ ..++.|++|.+....
T Consensus 258 ~V~---~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 258 VLA---SKDYRLYIYRYVQLA 275 (279)
T ss_dssp EEE---ETTTEEEEEECSCCC
T ss_pred EEE---eCCCeEEEEEeeeec
Confidence 443 368899999987654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.86 E-value=2.8e-06 Score=79.18 Aligned_cols=235 Identities=10% Similarity=0.101 Sum_probs=147.9
Q ss_pred eEEecCCC-CEEEEEc--------CCeEEEEECCCCcEEEEeeC---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Q 011916 172 NLVDWSSQ-NVLAVGL--------GTCVYLWTASNSKVTRLCDL---GPGDSVCSVQWTREGSYISVGTNLGQVQVWDGT 239 (475)
Q Consensus 172 ~~l~ws~~-~~la~~~--------~~~V~lw~~~~~~~~~~~~~---~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~ 239 (475)
..++|.++ +++.+.. ++.|..||..++........ .....-..+.|.++|+.|+++...+.|..++.+
T Consensus 21 EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~ 100 (314)
T d1pjxa_ 21 EGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD 100 (314)
T ss_dssp EEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT
T ss_pred eEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCC
Confidence 44677776 5665543 35799999998876554421 112346789999999988888877788889976
Q ss_pred CCeeeEEecCCCC----ceEEEEeC--CCEEEEEeC-------------CCcEEEEECCCCCccEEEecCccCCEEEEEE
Q 011916 240 QCKRVRTFGGHQT----RAGVLAWN--SRILSSGSR-------------DRNILQHDLRVSSDYICKLAGHKSEVCGLKW 300 (475)
Q Consensus 240 ~~~~~~~~~~h~~----~v~~l~~~--~~~l~sgs~-------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 300 (475)
............+ ....++++ |++.++-.. ...-.+|.+...+.... +...-..-..++|
T Consensus 101 g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~-~~~~~~~pNGi~~ 179 (314)
T d1pjxa_ 101 GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQ-VDTAFQFPNGIAV 179 (314)
T ss_dssp SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEE-EEEEESSEEEEEE
T ss_pred CcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeE-eeCCcceeeeeEE
Confidence 5543322221111 24556764 555555321 01113333332333222 2223344578999
Q ss_pred cCCCC-----EEEEEeCCCcEEEEECCCCceeE------EEec-cccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 301 SHDDR-----ELASGGNDNQLLVWNQHSQQPTL------RLTE-HTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 301 s~~~~-----~lasg~~Dg~I~iwd~~~~~~~~------~~~~-h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
++++. ++++-+..+.|+.||+.....+. .+.. +......|++..+|..+++.. ..+.|.+||..+
T Consensus 180 ~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~---~~g~I~~~dp~~ 256 (314)
T d1pjxa_ 180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW---GSSHIEVFGPDG 256 (314)
T ss_dssp EECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE---TTTEEEEECTTC
T ss_pred CCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc---CCCEEEEEeCCC
Confidence 98764 44445677889999876432222 1111 223457899999998444433 478999999988
Q ss_pred CceeeeecC-CCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCC
Q 011916 369 GHQLNSVDT-GSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPS 411 (475)
Q Consensus 369 ~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~ 411 (475)
++.+..+.. ....++++|.++++.|+++ ...+|.|..++++.
T Consensus 257 g~~~~~i~~p~~~~t~~afg~d~~~lyVt-~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 257 GQPKMRIRCPFEKPSNLHFKPQTKTIFVT-EHENNAVWKFEWQR 299 (314)
T ss_dssp BSCSEEEECSSSCEEEEEECTTSSEEEEE-ETTTTEEEEEECSS
T ss_pred CEEEEEEECCCCCEEEEEEeCCCCEEEEE-ECCCCcEEEEECCC
Confidence 887777765 4678999999999877765 45678888888753
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.85 E-value=6.6e-06 Score=76.69 Aligned_cols=225 Identities=8% Similarity=0.050 Sum_probs=143.1
Q ss_pred CCceeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCC
Q 011916 168 DFYLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN----LGQVQVWDGTQC 241 (475)
Q Consensus 168 d~~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~----dg~v~iwd~~~~ 241 (475)
.+.+..+.|.++ +|+.+.. ++.|+.|+.++++...... ........+++.+||+++++... .+.|...+....
T Consensus 39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence 345667899876 6666653 7899999998887666553 44567889999999997777543 234555565555
Q ss_pred eeeEEecC--CCCceEEEEe--CCCEEEEEeCC----CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE-eC
Q 011916 242 KRVRTFGG--HQTRAGVLAW--NSRILSSGSRD----RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG-GN 312 (475)
Q Consensus 242 ~~~~~~~~--h~~~v~~l~~--~~~~l~sgs~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg-~~ 312 (475)
........ -......+++ +|++.++.... ..-.+|-+...+..+..+...-....+|+|+++++.|..+ +.
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~ 197 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETT 197 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEeccc
Confidence 44443332 1234566777 45655553221 1122333332333344333334457889999999866554 56
Q ss_pred CCcEEEEECCCC-ceeEEE-------eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC------
Q 011916 313 DNQLLVWNQHSQ-QPTLRL-------TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG------ 378 (475)
Q Consensus 313 Dg~I~iwd~~~~-~~~~~~-------~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~------ 378 (475)
.+.|+.||+... ...... .........|++..+|..+++.. ..+.|.+||. .|+.+..+...
T Consensus 198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~---~~g~V~~~~p-~G~~l~~i~~P~~~~~~ 273 (319)
T d2dg1a1 198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY---GQGRVLVFNK-RGYPIGQILIPGRDEGH 273 (319)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE---TTTEEEEECT-TSCEEEEEECTTGGGTC
T ss_pred CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc---CCCEEEEECC-CCcEEEEEeCCCcCCCc
Confidence 789999998643 211111 11123356899999998444433 5899999995 78888887543
Q ss_pred -CCeeEEEEcCCCCeEEEEE
Q 011916 379 -SQVCNLAWSKNVNELVSTH 397 (475)
Q Consensus 379 -~~v~~l~~s~~~~~l~~~~ 397 (475)
..+++++|.+.+..+++++
T Consensus 274 ~~~~~~~~~~~~~~~~~~t~ 293 (319)
T d2dg1a1 274 MLRSTHPQFIPGTNQLIICS 293 (319)
T ss_dssp SCBCCEEEECTTSCEEEEEE
T ss_pred CceeeeEEEeCCCCEEEEEc
Confidence 2578999999888887754
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=9.7e-07 Score=87.09 Aligned_cols=278 Identities=12% Similarity=0.118 Sum_probs=162.6
Q ss_pred EecCCC-CEEEEEcCCeEEEEECCCCcEEEEeeCCC--CCcEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCC
Q 011916 174 VDWSSQ-NVLAVGLGTCVYLWTASNSKVTRLCDLGP--GDSVCSVQWTREGSYISVGTN---------LGQVQVWDGTQC 241 (475)
Q Consensus 174 l~ws~~-~~la~~~~~~V~lw~~~~~~~~~~~~~~~--~~~V~~v~~spdg~~la~g~~---------dg~v~iwd~~~~ 241 (475)
..|.++ .++.-..++.|.+||+.+++...++.... ...+....|||||++++.... .|.+.++|+.++
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~ 101 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG 101 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence 356665 34444457889999999988766665321 235678889999999888753 578899999987
Q ss_pred eeeEEe--cCCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCE-----------------EEEEE
Q 011916 242 KRVRTF--GGHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEV-----------------CGLKW 300 (475)
Q Consensus 242 ~~~~~~--~~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V-----------------~~l~~ 300 (475)
...... ......+....| +|+.|+-.. ++.|.+.+.........+..+....| .++-|
T Consensus 102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~W 180 (465)
T d1xfda1 102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWW 180 (465)
T ss_dssp CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEE
T ss_pred ceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEE
Confidence 654432 233344555666 577777665 56788888763332222222222222 47789
Q ss_pred cCCCCEEEEEeCC-Cc---------------------------------EEEEECCCCceeEEEe------ccccceeEE
Q 011916 301 SHDDRELASGGND-NQ---------------------------------LLVWNQHSQQPTLRLT------EHTAAVKAI 340 (475)
Q Consensus 301 s~~~~~lasg~~D-g~---------------------------------I~iwd~~~~~~~~~~~------~h~~~v~~l 340 (475)
||||++||....| .. +.++|+..+....... .....+..+
T Consensus 181 SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~ 260 (465)
T d1xfda1 181 SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMV 260 (465)
T ss_dssp CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEE
T ss_pred CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeee
Confidence 9999999986422 22 3444444332211111 122246788
Q ss_pred EECCCCCcEEEEecC-CCCCeEEEEECCCCceeeeec--CCCC----eeEEEEcCCCCeEEEEEe-cCC--CeEEEEECC
Q 011916 341 AWSPHQSSLLASGGG-TADRCIRFWNTSNGHQLNSVD--TGSQ----VCNLAWSKNVNELVSTHG-YSQ--NQIMVWKYP 410 (475)
Q Consensus 341 ~~sp~~~~ll~sg~G-s~d~~I~iwd~~~~~~~~~~~--~~~~----v~~l~~s~~~~~l~~~~g-~~d--g~I~iwd~~ 410 (475)
.|+|+++.++..... .....|.++|..+|++...+. .... -....|+++|+.++.... ..+ +.++.+.+.
T Consensus 261 ~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~ 340 (465)
T d1xfda1 261 KWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVS 340 (465)
T ss_dssp EESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEE
T ss_pred EEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEec
Confidence 999998855544321 122468889999998766543 2222 245689999997654311 122 234444321
Q ss_pred ------CCceEEEecCCCcceEEE-EECCCCCEEE-EEeCCC--CEEEEecC
Q 011916 411 ------SMAKVSTLTGHSLRVLYL-ATSPDGQTIV-TGAGDE--TLRFWNVF 452 (475)
Q Consensus 411 ------~~~~~~~l~~h~~~V~~l-~~spdg~~l~-s~s~Dg--~I~iW~~~ 452 (475)
.+..+..++...-.|..+ .|+.++..|+ ++..++ .-.+|.+.
T Consensus 341 ~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~ 392 (465)
T d1xfda1 341 SSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (465)
T ss_dssp CSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred cccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEE
Confidence 233344555555556665 6888877665 444432 33455543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.78 E-value=3.2e-06 Score=78.16 Aligned_cols=235 Identities=11% Similarity=0.071 Sum_probs=148.7
Q ss_pred CCCCceeccCCCCCCCCceeEEecCCC-CEEEEEc-CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCC
Q 011916 153 PKTPHKVLDAPSLQDDFYLNLVDWSSQ-NVLAVGL-GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNL 230 (475)
Q Consensus 153 ~~~p~~~l~~p~~~~d~~v~~l~ws~~-~~la~~~-~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~d 230 (475)
...|.+++.. +....++..++++++ +++++.. ++.|+.|+... +..... .....+.+++|+++|+++++...+
T Consensus 14 ~~~~~~v~~~--~p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~~~~--~~~~~~~gla~~~dG~l~v~~~~~ 88 (302)
T d2p4oa1 14 ELAPAKIITS--FPVNTFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHA--TVEGKVSGLAFTSNGDLVATGWNA 88 (302)
T ss_dssp CCCCEEEEEE--ECTTCCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEE--ECSSEEEEEEECTTSCEEEEEECT
T ss_pred cCCcccEEEE--CCCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CEEEEE--cCCCCcceEEEcCCCCeEEEecCC
Confidence 3445555431 223345777899998 6766665 78899998664 444444 345789999999999999998888
Q ss_pred CeEEEEECCCC--eeeEEec-CCCCceEEEEe--CCCEEEEEeCCCcEEEEECCCCCccEEEec---------CccCCEE
Q 011916 231 GQVQVWDGTQC--KRVRTFG-GHQTRAGVLAW--NSRILSSGSRDRNILQHDLRVSSDYICKLA---------GHKSEVC 296 (475)
Q Consensus 231 g~v~iwd~~~~--~~~~~~~-~h~~~v~~l~~--~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~---------~h~~~V~ 296 (475)
+.+.+|+.... ....... ........+++ +++++++.+.++.+..+|.......+.... .......
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 168 (302)
T d2p4oa1 89 DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN 168 (302)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE
T ss_pred ceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccc
Confidence 88888876432 2222111 23445677877 467777777888888888764322222211 1123456
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCceeE--EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCce-ee
Q 011916 297 GLKWSHDDRELASGGNDNQLLVWNQHSQQPTL--RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQ-LN 373 (475)
Q Consensus 297 ~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~--~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~-~~ 373 (475)
.+.+.. +.++++.+..+.|+.++........ ...........+++.++|. |+++.. .++.|..++...... +.
T Consensus 169 gi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~-l~va~~--~~~~V~~i~p~G~~~~~~ 244 (302)
T d2p4oa1 169 GLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN-LYGATH--IYNSVVRIAPDRSTTIIA 244 (302)
T ss_dssp EEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC-EEEECB--TTCCEEEECTTCCEEEEE
T ss_pred cccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCC-EEEEEc--CCCcEEEECCCCCEEEEE
Confidence 777754 3355566777889988877543221 1112344567899999998 555433 588899998654322 22
Q ss_pred eec-CCCCeeEEEE---cCCCCeEEEE
Q 011916 374 SVD-TGSQVCNLAW---SKNVNELVST 396 (475)
Q Consensus 374 ~~~-~~~~v~~l~~---s~~~~~l~~~ 396 (475)
... .-...++++| .+|++.|+++
T Consensus 245 ~~~~~~~~pt~vafg~~~~D~~~Lyvt 271 (302)
T d2p4oa1 245 QAEQGVIGSTAVAFGQTEGDCTAIYVV 271 (302)
T ss_dssp CGGGTCTTEEEEEECCSTTTTTEEEEE
T ss_pred ecCCCCCCceEEEEcCCCCCCCEEEEE
Confidence 222 3356889999 6788888774
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=3.6e-06 Score=82.85 Aligned_cols=290 Identities=10% Similarity=0.047 Sum_probs=165.6
Q ss_pred CceeEEecCCC-CEEEEEc----------CCeEEEEECCCCcEEEEeeC-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 011916 169 FYLNLVDWSSQ-NVLAVGL----------GTCVYLWTASNSKVTRLCDL-GPGDSVCSVQWTREGSYISVGTNLGQVQVW 236 (475)
Q Consensus 169 ~~v~~l~ws~~-~~la~~~----------~~~V~lw~~~~~~~~~~~~~-~~~~~V~~v~~spdg~~la~g~~dg~v~iw 236 (475)
..+....|||+ +.++... .+.++++|+.++....+... .....+....|||||+.||.... +.|.+.
T Consensus 61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-~nl~~~ 139 (465)
T d1xfda1 61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYC 139 (465)
T ss_dssp TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEec-ceEEEE
Confidence 34455678887 4333332 36799999999987766432 22345667889999999998775 688888
Q ss_pred ECCCCeeeEEec-CCCCce-----------------EEEEe--CCCEEEEEeC-CCc-----------------------
Q 011916 237 DGTQCKRVRTFG-GHQTRA-----------------GVLAW--NSRILSSGSR-DRN----------------------- 272 (475)
Q Consensus 237 d~~~~~~~~~~~-~h~~~v-----------------~~l~~--~~~~l~sgs~-dg~----------------------- 272 (475)
+..++..++... +....| .++.| +|+.|+.... +..
T Consensus 140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp 219 (465)
T d1xfda1 140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP 219 (465)
T ss_dssp SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence 887766554433 222211 35667 5677776542 222
Q ss_pred ----------EEEEECCCCCccEEEec-----CccCCEEEEEEcCCCCEEEEEeC-C---CcEEEEECCCCceeEEEecc
Q 011916 273 ----------ILQHDLRVSSDYICKLA-----GHKSEVCGLKWSHDDRELASGGN-D---NQLLVWNQHSQQPTLRLTEH 333 (475)
Q Consensus 273 ----------I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~s~~~~~lasg~~-D---g~I~iwd~~~~~~~~~~~~h 333 (475)
+.++|+........... ....-+..+.|++++++++...+ + ..|.++|..+++....+..+
T Consensus 220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~ 299 (465)
T d1xfda1 220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE 299 (465)
T ss_dssp BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc
Confidence 34444432221111111 11223678899999886666432 2 26888999998776555432
Q ss_pred c-cce----eEEEECCCCCcEEEEecCCCC--CeEEEEECC------CCceeeeecC-CCCeeEE-EEcCCCCeEEEEEe
Q 011916 334 T-AAV----KAIAWSPHQSSLLASGGGTAD--RCIRFWNTS------NGHQLNSVDT-GSQVCNL-AWSKNVNELVSTHG 398 (475)
Q Consensus 334 ~-~~v----~~l~~sp~~~~ll~sg~Gs~d--~~I~iwd~~------~~~~~~~~~~-~~~v~~l-~~s~~~~~l~~~~g 398 (475)
. +.| ....|+++|+.++....-..+ +.++...+. .+..+..+.. .-.|..+ .|+.+++.++.+ +
T Consensus 300 ~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~-a 378 (465)
T d1xfda1 300 SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFL-S 378 (465)
T ss_dssp CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEE-E
T ss_pred CCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEE-E
Confidence 2 222 356899999876442100022 334433321 2333334433 3345564 689988888764 3
Q ss_pred cCC--Ce--EEEEECCCCceEEEec---CCCcceEEEEECCCCCEEEEEeCC---CCEEEEecCCCCCCCCc
Q 011916 399 YSQ--NQ--IMVWKYPSMAKVSTLT---GHSLRVLYLATSPDGQTIVTGAGD---ETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 399 ~~d--g~--I~iwd~~~~~~~~~l~---~h~~~V~~l~~spdg~~l~s~s~D---g~I~iW~~~~~~~~~~~ 460 (475)
..+ +. |+-.++........+. ........+.|||++++++..... -.+.+++...+.....+
T Consensus 379 ~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~L 450 (465)
T d1xfda1 379 TEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (465)
T ss_dssp SSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred eCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEE
Confidence 222 23 4444444333222222 234457789999999998855443 45788887666554443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.62 E-value=7.7e-05 Score=68.34 Aligned_cols=218 Identities=6% Similarity=-0.037 Sum_probs=144.3
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC-CCEEEEEeCCCcEEEEECCCCCccEEEec-
Q 011916 213 CSVQWTRE-GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN-SRILSSGSRDRNILQHDLRVSSDYICKLA- 289 (475)
Q Consensus 213 ~~v~~spd-g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~-~~~l~sgs~dg~I~iwd~~~~~~~~~~~~- 289 (475)
.+..|.+. +.++.+--..+.|..||.++++.. .+. ....+.++++. ...|+.++.+ .|.++|... ++......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~t-g~~~~l~~~ 96 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTAT-GVLTLHAEL 96 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTT-CCEEEEECS
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEecCCCEEEEEeC-ccEEeeccc-ceeeEEeee
Confidence 35678874 455555556789999999887654 222 23467778773 3344445554 588899873 33222211
Q ss_pred -C--ccCCEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 290 -G--HKSEVCGLKWSHDDRELASGGN----DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 290 -~--h~~~V~~l~~s~~~~~lasg~~----Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
. ....+..+.+.++|++.++... .+.-.+|.+..++...... .-.....++|+++++.++.+.+ ..+.|.
T Consensus 97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~~~s~d~~~l~~~dt--~~~~I~ 173 (295)
T d2ghsa1 97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFSPDGTTGYFVDT--KVNRLM 173 (295)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEECTTSCEEEEEET--TTCEEE
T ss_pred ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-ccCCcceeeecCCCceEEEeec--ccceee
Confidence 1 1125788999999987666432 2345667766665444433 3345688999999998888865 788999
Q ss_pred EEECCCC------ceeeee---cCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEEC-C
Q 011916 363 FWNTSNG------HQLNSV---DTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATS-P 432 (475)
Q Consensus 363 iwd~~~~------~~~~~~---~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~s-p 432 (475)
.|++... +..... ...+....+++..+|+..++ ....+.|..|| +.++.+..+.-....+++++|- +
T Consensus 174 ~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva--~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FGG~ 250 (295)
T d2ghsa1 174 RVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA--RWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFIGP 250 (295)
T ss_dssp EEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE--EETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEEST
T ss_pred EeeecccccccccceEEEeccCcccccccceEEcCCCCEEee--eeCCCceEEec-CCCcEeeEecCCCCceEEEEEeCC
Confidence 9986432 111111 13345788999999998887 56788999999 6788888887666789999995 6
Q ss_pred CCCEEEEE
Q 011916 433 DGQTIVTG 440 (475)
Q Consensus 433 dg~~l~s~ 440 (475)
|.+.|+..
T Consensus 251 d~~~LyvT 258 (295)
T d2ghsa1 251 DASRLLVT 258 (295)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEE
Confidence 76655543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.47 E-value=0.0004 Score=62.05 Aligned_cols=265 Identities=9% Similarity=0.087 Sum_probs=178.0
Q ss_pred EecCCCCEEEEEc----CCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC
Q 011916 174 VDWSSQNVLAVGL----GTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 174 l~ws~~~~la~~~----~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~ 249 (475)
+...+|+.+++-. ...|.|-|+.............+ +.-.+|..+.||.-+. .+++|+|+++.+.++.+.-
T Consensus 27 ~T~ESDkyicVRe~~~~~~~VvIidl~n~~~~~Rrpi~Ad----sAIMhP~~~IiALrag-~~LQiFnletK~klks~~~ 101 (327)
T d1utca2 27 LTMESDKFICIREKVGEQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKAG-KTLQIFNIEMKSKMKAHTM 101 (327)
T ss_dssp EECSSSSEEEEEEEETTEEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEET-TEEEEEETTTTEEEEEEEC
T ss_pred EEEecCCEEEEEeccCCCceEEEEECCCCCcceecccchh----hhhcCCCCcEEEEecC-CeEEEEehhHhhhhceEEc
Confidence 3444566666533 34789999876653333322323 4446788888888774 6899999999999988875
Q ss_pred CCCceEEEEe-CCCEEEEEeCCCcEEEEECCCCCccEEEecCcc----CCEEEEEEcCCCCEEEEEe---C----CCcEE
Q 011916 250 HQTRAGVLAW-NSRILSSGSRDRNILQHDLRVSSDYICKLAGHK----SEVCGLKWSHDDRELASGG---N----DNQLL 317 (475)
Q Consensus 250 h~~~v~~l~~-~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~----~~V~~l~~s~~~~~lasg~---~----Dg~I~ 317 (475)
.. .|.--.| +.+.|+..+. ..|+.|+++....+.+.+..|. ..|..-..++++++++..| . .|.+.
T Consensus 102 ~e-~VvfWkWis~~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQ 179 (327)
T d1utca2 102 TD-DVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ 179 (327)
T ss_dssp SS-CCCEEEESSSSEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEE
T ss_pred CC-CcEEEEecCCCEEEEEcC-CceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEE
Confidence 44 6666777 7777777764 5799999976666777766654 4688888899999887654 2 36788
Q ss_pred EEECCCCceeEEEeccccceeEEEECC--CCCcEEEEec-CCCCCeEEEEECCCCc---e---eeeec-------CCCCe
Q 011916 318 VWNQHSQQPTLRLTEHTAAVKAIAWSP--HQSSLLASGG-GTADRCIRFWNTSNGH---Q---LNSVD-------TGSQV 381 (475)
Q Consensus 318 iwd~~~~~~~~~~~~h~~~v~~l~~sp--~~~~ll~sg~-Gs~d~~I~iwd~~~~~---~---~~~~~-------~~~~v 381 (475)
+|..+... -+.+.+|.+....+.... +...+++.+. +...+++++.++.... . .+..+ ...-.
T Consensus 180 LYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFP 258 (327)
T d1utca2 180 LYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 258 (327)
T ss_dssp EEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCE
T ss_pred EEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcE
Confidence 99987653 467788877666665532 2223444332 2244789999986531 1 11111 13346
Q ss_pred eEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEE
Q 011916 382 CNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRF 448 (475)
Q Consensus 382 ~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~i 448 (475)
.++..++....++. -+.-|.|++||+.++..+..-+-....|...+-..+..=++....+|.|.-
T Consensus 259 vamqvs~kygiiyv--iTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 259 VAMQISEKHDVVFL--ITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEEEETTTTEEEE--EETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred EEEEeeccCCEEEE--EecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 77888888888887 457899999999999998877766667765555555445666667776643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.45 E-value=1.7e-05 Score=71.28 Aligned_cols=222 Identities=6% Similarity=0.006 Sum_probs=122.5
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC-C-----CeEEEEECCCCeeeEEecC-----
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN-L-----GQVQVWDGTQCKRVRTFGG----- 249 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~-d-----g~v~iwd~~~~~~~~~~~~----- 249 (475)
.++...++.|++.|+.+++..++. .+.+.+...+|||||+.||.... + +.|.+++..+++.......
T Consensus 14 ~v~f~~~~dl~~~d~~~g~~~~Lt--~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~ 91 (281)
T d1k32a2 14 RIIFVCCDDLWEHDLKSGSTRKIV--SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKST 91 (281)
T ss_dssp EEEEEETTEEEEEETTTCCEEEEE--CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEE
T ss_pred EEEEEeCCcEEEEECCCCCEEEEe--cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCcc
Confidence 445556778999999999987775 45677889999999999987643 2 2477788877766543221
Q ss_pred -CCCceEEEEe--CCCEEEEEeCC------CcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC------
Q 011916 250 -HQTRAGVLAW--NSRILSSGSRD------RNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN------ 314 (475)
Q Consensus 250 -h~~~v~~l~~--~~~~l~sgs~d------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg------ 314 (475)
.........| +++.|+..... ..+...+.. +...... +......+.+.+.+..++....+.
T Consensus 92 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (281)
T d1k32a2 92 GRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVEND--GINFVPL--NLGPATHILFADGRRVIGRNTFELPHWKGY 167 (281)
T ss_dssp TTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGG--GTEEEEC--CSCSCSEEEEETTEEEEEESCSCCTTSTTC
T ss_pred CccccccccccCCCCCEEEEEEccCCCccceeeeeecCC--CceeEEe--cCCccceeeecCCCeEEEeeccccceeeee
Confidence 1123345556 56666665322 123344433 2222222 222222333333333333322211
Q ss_pred -----cEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCC
Q 011916 315 -----QLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKN 389 (475)
Q Consensus 315 -----~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~ 389 (475)
...+........ ..............+.++. ++..........|.++|+.+++...... ........|+|+
T Consensus 168 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~~~~lt~-~~~~~~~~~SpD 243 (281)
T d1k32a2 168 RGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKDLRKHTS-FTDYYPRHLNTD 243 (281)
T ss_dssp CSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSCSCEECCC-CCSSCEEEEEES
T ss_pred ccCCcceeeeeccccce-eeccCCccccceeeeeccc--cceecccccccceEEEeCCCCceEEeec-CCCcccccCcCC
Confidence 111222222222 2222333444555666653 4443332345678889988776544332 233334579999
Q ss_pred CCeEEEEEecCCCeEEEEECCCCceE
Q 011916 390 VNELVSTHGYSQNQIMVWKYPSMAKV 415 (475)
Q Consensus 390 ~~~l~~~~g~~dg~I~iwd~~~~~~~ 415 (475)
|+.|+.. .++.|+++|+.+++..
T Consensus 244 G~~I~f~---~~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 244 GRRILFS---KGGSIYIFNPDTEKIE 266 (281)
T ss_dssp SSCEEEE---ETTEEEEECTTTCCEE
T ss_pred CCEEEEE---eCCEEEEEECCCCCEE
Confidence 9998874 3678999999877654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.38 E-value=3.5e-05 Score=69.20 Aligned_cols=233 Identities=9% Similarity=-0.032 Sum_probs=128.9
Q ss_pred EEcCC--CCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEe-CCC-----cEEEEECCCCCccE
Q 011916 216 QWTRE--GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGS-RDR-----NILQHDLRVSSDYI 285 (475)
Q Consensus 216 ~~spd--g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs-~dg-----~I~iwd~~~~~~~~ 285 (475)
.++|| |+.+|..+. |.|.+.|+.+++.. .+..+.+.+...+| +|+.|+... .++ .|.+++.. ....
T Consensus 5 ~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~--~g~~ 80 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCC-DDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGE--NGEI 80 (281)
T ss_dssp CEEEEEETTEEEEEET-TEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETT--TTEE
T ss_pred ccCCCCCCCEEEEEeC-CcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEec--CCce
Confidence 45788 999887754 68999999887754 56667777888888 477776543 222 35555654 3333
Q ss_pred EEecCc-------cCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEE
Q 011916 286 CKLAGH-------KSEVCGLKWSHDDRELASGGND------NQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 286 ~~~~~h-------~~~V~~l~~s~~~~~lasg~~D------g~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
..+..+ ........|+|+|+.|+..... ..+...+...+..... +...... .|.+++..++..
T Consensus 81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~ 156 (281)
T d1k32a2 81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPATH-ILFADGRRVIGR 156 (281)
T ss_dssp EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCSE-EEEETTEEEEEE
T ss_pred EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccce-eeecCCCeEEEe
Confidence 333222 2345678899999999876432 2345555554443221 2222233 333444434443
Q ss_pred ecCCC---------CCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCc
Q 011916 353 GGGTA---------DRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSL 423 (475)
Q Consensus 353 g~Gs~---------d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~ 423 (475)
..... ............................++++.. +..........|+++|+.+.+.. .+..+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~-~lt~~~~ 234 (281)
T d1k32a2 157 NTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRI-YFITDIDGFGQIYSTDLDGKDLR-KHTSFTD 234 (281)
T ss_dssp SCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEE-EEEECTTSSCEEEEEETTSCSCE-ECCCCCS
T ss_pred eccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeecccc-ceecccccccceEEEeCCCCceE-EeecCCC
Confidence 22000 0111222222233333333444555566665532 22211223456888898766543 3433322
Q ss_pred ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 424 RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 424 ~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
.....|+|||+.|+.. .++.|+++|+.+++..+..
T Consensus 235 -~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~ 269 (281)
T d1k32a2 235 -YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE 269 (281)
T ss_dssp -SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred -cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEec
Confidence 2234689999988764 4678999999888766553
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.38 E-value=0.00052 Score=62.54 Aligned_cols=215 Identities=8% Similarity=-0.025 Sum_probs=140.5
Q ss_pred EecCCC--CEEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC-
Q 011916 174 VDWSSQ--NVLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG- 249 (475)
Q Consensus 174 l~ws~~--~~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~- 249 (475)
..|.+. .++-+. ..+.|+.||..+++... +.+ ...+.++++.++|.++++ +.+ .|.++|..+++.......
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~--~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~ 97 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKTV-HAL--PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELE 97 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC--SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSS
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EEC--CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeee
Confidence 457653 455554 37899999999987643 332 457889999999876654 554 588999998876544331
Q ss_pred ---CCCceEEEEeC--CCEEEEEeC----CCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEE-eCCCcEEEE
Q 011916 250 ---HQTRAGVLAWN--SRILSSGSR----DRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASG-GNDNQLLVW 319 (475)
Q Consensus 250 ---h~~~v~~l~~~--~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg-~~Dg~I~iw 319 (475)
....+..+..+ |++.++... .+.-.+|.+. .+...... ..-.....+.|+++++.+..+ +..+.|+.+
T Consensus 98 ~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~ 175 (295)
T d2ghsa1 98 SDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRV 175 (295)
T ss_dssp TTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred cCCCcccceeeEECCCCCEEEEeccccccccceeEeeec-CCcEEEEe-eccCCcceeeecCCCceEEEeecccceeeEe
Confidence 12256667664 555554432 2344566655 33333333 233456889999999866554 556789998
Q ss_pred ECCCC------ce--eEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC-CCeeEEEEc-CC
Q 011916 320 NQHSQ------QP--TLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG-SQVCNLAWS-KN 389 (475)
Q Consensus 320 d~~~~------~~--~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~-~~v~~l~~s-~~ 389 (475)
++... +. ...+.+..+....+++..+|...++.- ..+.|..||. .|+.+..+... ..+++++|- ++
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~---~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d 251 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARW---GEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPD 251 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEE---TTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTT
T ss_pred eecccccccccceEEEeccCcccccccceEEcCCCCEEeeee---CCCceEEecC-CCcEeeEecCCCCceEEEEEeCCC
Confidence 87521 11 112223455678999999998555543 4788999994 68888888765 568999996 78
Q ss_pred CCeEEEEEec
Q 011916 390 VNELVSTHGY 399 (475)
Q Consensus 390 ~~~l~~~~g~ 399 (475)
.+.|+++++.
T Consensus 252 ~~~LyvTta~ 261 (295)
T d2ghsa1 252 ASRLLVTSAR 261 (295)
T ss_dssp SCEEEEEEBC
T ss_pred CCEEEEEECC
Confidence 8888876553
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.29 E-value=0.0012 Score=59.04 Aligned_cols=245 Identities=7% Similarity=-0.006 Sum_probs=152.6
Q ss_pred EEEEEcCCeEEEEECCCCcEE-----EEeeCCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEECCCCeeeEEecCCCCce
Q 011916 181 VLAVGLGTCVYLWTASNSKVT-----RLCDLGPGDSVCSVQWTREGSYISVG-TNLGQVQVWDGTQCKRVRTFGGHQTRA 254 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~-----~~~~~~~~~~V~~v~~spdg~~la~g-~~dg~v~iwd~~~~~~~~~~~~h~~~v 254 (475)
+|..+..+.|.-.+++..... .... .+...+.+|+|....+.|... ..++.|+..++........+......+
T Consensus 3 fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~-~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p 81 (263)
T d1npea_ 3 HLLFAQTGKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP 81 (263)
T ss_dssp EEEEEEEEEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred EEEEeCCCeEEEEECCCccccccccccccc-cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence 345555667776666544321 1111 223457789999877766655 456789888887665555554444566
Q ss_pred EEEEeC--CCEE-EEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCceeE
Q 011916 255 GVLAWN--SRIL-SSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGND-N--QLLVWNQHSQQPTL 328 (475)
Q Consensus 255 ~~l~~~--~~~l-~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~D-g--~I~iwd~~~~~~~~ 328 (475)
..++++ +..| ++-...+.|.+.++.... ..............+++.|...+|...... + .|..-++.......
T Consensus 82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~-~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~ 160 (263)
T d1npea_ 82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI 160 (263)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE
T ss_pred cEEEEeccCCeEEEeccCCCEEEEEecCCce-EEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee
Confidence 777664 4555 455567899999987433 223333344678999999977766654322 2 35555665444333
Q ss_pred EEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEE
Q 011916 329 RLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWK 408 (475)
Q Consensus 329 ~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd 408 (475)
.....-....+|++.+.+..|+.+-. ..+.|...|+........+........+++. +..|+.+ -...+.|...|
T Consensus 161 i~~~~~~~P~glaiD~~~~~lYw~d~--~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~--~~~lYwt-d~~~~~I~~~~ 235 (263)
T d1npea_ 161 LAQDNLGLPNGLTFDAFSSQLCWVDA--GTHRAECLNPAQPGRRKVLEGLQYPFAVTSY--GKNLYYT-DWKTNSVIAMD 235 (263)
T ss_dssp EECTTCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTEEEEEEEEECCCSEEEEEEE--TTEEEEE-ETTTTEEEEEE
T ss_pred eeeecccccceEEEeecCcEEEEEeC--CCCEEEEEECCCCCeEEEECCCCCcEEEEEE--CCEEEEE-ECCCCEEEEEE
Confidence 33333456689999988888888754 5789999998765544444433445677775 4556554 45678899999
Q ss_pred CCCCceEEEecC-CCcceEEEEECC
Q 011916 409 YPSMAKVSTLTG-HSLRVLYLATSP 432 (475)
Q Consensus 409 ~~~~~~~~~l~~-h~~~V~~l~~sp 432 (475)
..+++.+..+.. ......+++..+
T Consensus 236 ~~~g~~~~~~~~~~~~~~~gi~v~~ 260 (263)
T d1npea_ 236 LAISKEMDTFHPHKQTRLYGITIAL 260 (263)
T ss_dssp TTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred CCCCccceEECCCCCCCcceEEEeC
Confidence 988887766643 334455555544
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.28 E-value=0.00066 Score=63.86 Aligned_cols=221 Identities=11% Similarity=0.079 Sum_probs=134.8
Q ss_pred EEEEcC---CCCEEEEEeC-CCeEEEEECCCCeeeEEecC-CCCceEEEEe----CCCEEEEEeCCC-------------
Q 011916 214 SVQWTR---EGSYISVGTN-LGQVQVWDGTQCKRVRTFGG-HQTRAGVLAW----NSRILSSGSRDR------------- 271 (475)
Q Consensus 214 ~v~~sp---dg~~la~g~~-dg~v~iwd~~~~~~~~~~~~-h~~~v~~l~~----~~~~l~sgs~dg------------- 271 (475)
.+.+.. ||++|++... ++.|.+.|+.+.+..+.+.. ....+..+.. +-.+++.++.+.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455554 7899888764 78999999999988765542 2233444443 235777766532
Q ss_pred -----cEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCC---------------cEEEE------------
Q 011916 272 -----NILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDN---------------QLLVW------------ 319 (475)
Q Consensus 272 -----~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg---------------~I~iw------------ 319 (475)
.+.+.|... .+...... -.+....+.++++|+++++.+.+. .+.++
T Consensus 169 ~~y~~~~t~ID~~t-m~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G 246 (459)
T d1fwxa2 169 ANYVNVFTAVDADK-WEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG 246 (459)
T ss_dssp G-EEEEEEEEETTT-TEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred hhcceEEEEEecCC-ceEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence 256677763 33322222 233566789999999998876431 13333
Q ss_pred -----------ECCC--CceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCc------------eeee
Q 011916 320 -----------NQHS--QQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGH------------QLNS 374 (475)
Q Consensus 320 -----------d~~~--~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~------------~~~~ 374 (475)
|.+. +..+..+..-......+..+|||+++++++. .+.++.++|++.-. ....
T Consensus 247 k~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGK--Ls~tVSViD~~Ki~~~~~~~~~~~~~~~~e 324 (459)
T d1fwxa2 247 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK--LSPTVTVLDVTRFDAVFYENADPRSAVVAE 324 (459)
T ss_dssp CSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECT--TSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred CcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCC--cCCcEEEEEehhhhhhhcccCCccccEEee
Confidence 3321 1111111112233567899999999999975 99999999986321 1222
Q ss_pred ecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCC----------ceEEEecCCCcceEEE------EECCCCCEEE
Q 011916 375 VDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSM----------AKVSTLTGHSLRVLYL------ATSPDGQTIV 438 (475)
Q Consensus 375 ~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~----------~~~~~l~~h~~~V~~l------~~spdg~~l~ 438 (475)
.+.+-....-+|...|.-..+ -+-|.+|.-|++... ..+..+.-|-.. -.+ ...|||++|+
T Consensus 325 ~elglgPLht~fd~~g~ayts--lfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~-gh~~~~~g~t~~~dgk~l~ 401 (459)
T d1fwxa2 325 PELGLGPLHTAFDGRGNAYTS--LFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP-GHLKTVMGETLDATNDWLV 401 (459)
T ss_dssp CBCCSCEEEEEECTTSEEEEE--ETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE-EEEEETTTTSTTCCSSEEE
T ss_pred cccCcCccccccCCCceEEEE--eeccceEEEEecchhhhhhccccCCcceeccccccCC-CCCccCcCCcCCCCCCEEE
Confidence 344555677788887743333 788999999998432 334455444322 122 2367899988
Q ss_pred EEe
Q 011916 439 TGA 441 (475)
Q Consensus 439 s~s 441 (475)
+..
T Consensus 402 ~~n 404 (459)
T d1fwxa2 402 CLS 404 (459)
T ss_dssp EEE
T ss_pred Eec
Confidence 875
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=0.0017 Score=57.95 Aligned_cols=234 Identities=11% Similarity=-0.046 Sum_probs=147.2
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEECCCCe----eeEEecCCCCceE
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGT-NLGQVQVWDGTQCK----RVRTFGGHQTRAG 255 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~-~dg~v~iwd~~~~~----~~~~~~~h~~~v~ 255 (475)
+|..+....|+..++++.....+. .....+.+++|.+.++.|.... ..+.|.-.++.... ....+......+.
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~~~~--~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECCCeEEEEECCCCcceeee--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 455666777888999888776665 3456788999998777666654 45667766664321 1222222233444
Q ss_pred EEEe--CC-CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeEEE
Q 011916 256 VLAW--NS-RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGG--NDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 256 ~l~~--~~-~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~--~Dg~I~iwd~~~~~~~~~~ 330 (475)
.+++ -+ ++.++-...+.|.+.++.. ...............++++.|...+|.... ..+.|...++.........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g-~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~ 159 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKG-VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV 159 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS-SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCC-ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence 5555 34 4555556678899999973 333344445556789999998665665543 3456777777655443333
Q ss_pred eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC---CCeeEEEEcCCCCeEEEEEecCCCeEEEE
Q 011916 331 TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG---SQVCNLAWSKNVNELVSTHGYSQNQIMVW 407 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~---~~v~~l~~s~~~~~l~~~~g~~dg~I~iw 407 (475)
...-....++++.+.+..|+.+-. ..+.|...++............ .....+++. +..|+.+ ...++.|...
T Consensus 160 ~~~~~~p~gl~iD~~~~~lYw~d~--~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~t-d~~~~~I~~~ 234 (266)
T d1ijqa1 160 TENIQWPNGITLDLLSGRLYWVDS--KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWT-DIINEAIFSA 234 (266)
T ss_dssp CSSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEE-ETTTTEEEEE
T ss_pred ccccceeeEEEeeccccEEEEecC--CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEE-ECCCCeEEEE
Confidence 334456789999998888888865 6789999998765443333222 335566666 3455553 4467788888
Q ss_pred ECCCCceEEEecCCC
Q 011916 408 KYPSMAKVSTLTGHS 422 (475)
Q Consensus 408 d~~~~~~~~~l~~h~ 422 (475)
+..+++....+....
T Consensus 235 ~~~~g~~~~~~~~~~ 249 (266)
T d1ijqa1 235 NRLTGSDVNLLAENL 249 (266)
T ss_dssp ETTTCCCCEEEECSC
T ss_pred ECCCCcceEEEEcCC
Confidence 877776655555433
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.18 E-value=0.0015 Score=58.25 Aligned_cols=233 Identities=9% Similarity=0.029 Sum_probs=144.9
Q ss_pred CEEEEEeCCCeEEEEECCCCee-----eEEecCCCCceEEEEeC--CCEEEEE-eCCCcEEEEECCCCCccEEEecCccC
Q 011916 222 SYISVGTNLGQVQVWDGTQCKR-----VRTFGGHQTRAGVLAWN--SRILSSG-SRDRNILQHDLRVSSDYICKLAGHKS 293 (475)
Q Consensus 222 ~~la~g~~dg~v~iwd~~~~~~-----~~~~~~h~~~v~~l~~~--~~~l~sg-s~dg~I~iwd~~~~~~~~~~~~~h~~ 293 (475)
.+|+.+.. +.|+-.+++.... ...+..+...+..++++ .+.|+.. ..++.|...++.. ......+.....
T Consensus 2 ~fLl~s~~-~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g-~~~~~v~~~~~~ 79 (263)
T d1npea_ 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHG-GEPTTIIRQDLG 79 (263)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSS-CCCEEEECTTCC
T ss_pred CEEEEeCC-CeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEccc-CCcEEEEEeccc
Confidence 34555444 4666666543321 12223334456777875 4545444 5667888888873 333333444445
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee
Q 011916 294 EVCGLKWSHDDRELA-SGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL 372 (475)
Q Consensus 294 ~V~~l~~s~~~~~la-sg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~ 372 (475)
.+.+|++..-+..|. +-...+.|.+.++........+.........+++.|...+++.+-.|.....|.--++......
T Consensus 80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~ 159 (263)
T d1npea_ 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR 159 (263)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence 788999987555555 4455679999999866543333344467899999999888888764334445666666554433
Q ss_pred eeec-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEE-eCCCCEEEEe
Q 011916 373 NSVD-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG-AGDETLRFWN 450 (475)
Q Consensus 373 ~~~~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~-s~Dg~I~iW~ 450 (475)
.... .-.....|++.+.++.|+.+ ....+.|...++........+.+.. ...+|++. +..|+.. ...+.|...|
T Consensus 160 ~i~~~~~~~P~glaiD~~~~~lYw~-d~~~~~I~~~~~~g~~~~~v~~~~~-~P~~lav~--~~~lYwtd~~~~~I~~~~ 235 (263)
T d1npea_ 160 ILAQDNLGLPNGLTFDAFSSQLCWV-DAGTHRAECLNPAQPGRRKVLEGLQ-YPFAVTSY--GKNLYYTDWKTNSVIAMD 235 (263)
T ss_dssp EEECTTCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTEEEEEEEEECCC-SEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred eeeeecccccceEEEeecCcEEEEE-eCCCCEEEEEECCCCCeEEEECCCC-CcEEEEEE--CCEEEEEECCCCEEEEEE
Confidence 3332 33567899999988888775 4467889999997655444444433 34577774 4455544 4567788888
Q ss_pred cCCCCCCCCc
Q 011916 451 VFPSLKAPAL 460 (475)
Q Consensus 451 ~~~~~~~~~~ 460 (475)
...+......
T Consensus 236 ~~~g~~~~~~ 245 (263)
T d1npea_ 236 LAISKEMDTF 245 (263)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCccceEE
Confidence 8776655443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.87 E-value=0.0029 Score=63.09 Aligned_cols=261 Identities=9% Similarity=0.017 Sum_probs=150.6
Q ss_pred EecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCC---CCcEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCeee
Q 011916 174 VDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGP---GDSVCSVQWTREGSYISVGTN------LGQVQVWDGTQCKRV 244 (475)
Q Consensus 174 l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~---~~~V~~v~~spdg~~la~g~~------dg~v~iwd~~~~~~~ 244 (475)
+++..+.++..+.++.|+-.|.+++++.-...+.. ...++.--...++ .++++.. +|.|.-+|+.+++.+
T Consensus 111 ~a~~~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~ 189 (571)
T d2ad6a1 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred ceeeCCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEE
Confidence 34445678888889999999999999866554321 1112211111133 4555553 688999999999998
Q ss_pred EEecCCC-------------------------------------Cce---EEEEeCCCEEEEEeC---------------
Q 011916 245 RTFGGHQ-------------------------------------TRA---GVLAWNSRILSSGSR--------------- 269 (475)
Q Consensus 245 ~~~~~h~-------------------------------------~~v---~~l~~~~~~l~sgs~--------------- 269 (475)
..+.... ..+ .++.....+++.+..
T Consensus 190 W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~ 269 (571)
T d2ad6a1 190 WRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK 269 (571)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT
T ss_pred EEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccc
Confidence 8754221 111 122222344444433
Q ss_pred -CCcEEEEECCCCCccEEEecCccC---------CEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeccc--
Q 011916 270 -DRNILQHDLRVSSDYICKLAGHKS---------EVCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQPTLRLTEHT-- 334 (475)
Q Consensus 270 -dg~I~iwd~~~~~~~~~~~~~h~~---------~V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~~~~h~-- 334 (475)
...+...|++ .++.+-.++.+.. ......+..+++ .++.++.+|.+++.|..+++++.......
T Consensus 270 ~s~svvAld~~-TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~ 348 (571)
T d2ad6a1 270 WTMTIWGRDLD-TGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTEEEEEETT-TCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred cccceeeeecc-chhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcc
Confidence 2346666776 3444333332111 111122222443 56778899999999999998764321100
Q ss_pred -----------------------------------cc--eeEEEECCCCCcEEEEec-----------------------
Q 011916 335 -----------------------------------AA--VKAIAWSPHQSSLLASGG----------------------- 354 (475)
Q Consensus 335 -----------------------------------~~--v~~l~~sp~~~~ll~sg~----------------------- 354 (475)
+. -...+++|+...+++-..
T Consensus 349 ~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (571)
T d2ad6a1 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccc
Confidence 00 012456666554433110
Q ss_pred -----------CCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC---
Q 011916 355 -----------GTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG--- 420 (475)
Q Consensus 355 -----------Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~--- 420 (475)
....|.|.-+|+.+|+.+..........+-.....+..+++ |..||.++.+|.++++.+-++.-
T Consensus 429 ~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~--G~~dg~l~A~Da~tGe~lW~~~l~~~ 506 (571)
T d2ad6a1 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWY--ATLDGYLKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred eeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEE--ECCCCeEEEEECCCCcEEEEEECCCC
Confidence 00125788899999999888765544433333445667776 88999999999999999988753
Q ss_pred -CCcceEEEEECCCCC-EEEEEe
Q 011916 421 -HSLRVLYLATSPDGQ-TIVTGA 441 (475)
Q Consensus 421 -h~~~V~~l~~spdg~-~l~s~s 441 (475)
...++ .|..||+ ||++.+
T Consensus 507 ~~a~P~---ty~~dGkqYi~v~~ 526 (571)
T d2ad6a1 507 GIGSPM---TYSFKGKQYIGSMY 526 (571)
T ss_dssp CCSCCE---EEEETTEEEEEEEE
T ss_pred ceecce---EEEECCEEEEEEEe
Confidence 22333 3444776 555543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.81 E-value=0.0051 Score=57.72 Aligned_cols=188 Identities=10% Similarity=0.069 Sum_probs=123.7
Q ss_pred CCEEEEEe-CCCcEEEEECCCCCccEEE-ecCccCCEEEEEEcC--CCCEEEEEeCCC------------------cEEE
Q 011916 261 SRILSSGS-RDRNILQHDLRVSSDYICK-LAGHKSEVCGLKWSH--DDRELASGGNDN------------------QLLV 318 (475)
Q Consensus 261 ~~~l~sgs-~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~--~~~~lasg~~Dg------------------~I~i 318 (475)
|++|++.. .+..|.+.|++. .+..+. .....+.+.++...+ +..+++.++.+. .+.+
T Consensus 99 GrylFVNDkan~RVAvIdl~~-fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ 177 (459)
T d1fwxa2 99 GRFLFMNDKANTRVARVRCDV-MKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 177 (459)
T ss_dssp EEEEEEEETTTTEEEEEETTT-TEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEE
T ss_pred eeEEEEEcCCCceEEEEECcc-eeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEE
Confidence 55666554 678899999983 343332 223456677777655 455777776632 3677
Q ss_pred EECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCC------------eEEEE----------------------
Q 011916 319 WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADR------------CIRFW---------------------- 364 (475)
Q Consensus 319 wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~------------~I~iw---------------------- 364 (475)
+|..+.+...++.- ......++++++|+++++++..++.+ .+.++
T Consensus 178 ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~V 256 (459)
T d1fwxa2 178 VDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV 256 (459)
T ss_dssp EETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred EecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCcee
Confidence 89988887766653 34567899999999999987422211 23333
Q ss_pred -ECCCC---ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCce------------EEEecCCCcceEEE
Q 011916 365 -NTSNG---HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAK------------VSTLTGHSLRVLYL 428 (475)
Q Consensus 365 -d~~~~---~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~------------~~~l~~h~~~V~~l 428 (475)
|.++. ..+..+..+.....+..+|||++++++ |.-+..+.|+|+..... ..+.+ ..-..+.-
T Consensus 257 VD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~Va-GKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e-lglgPLht 334 (459)
T d1fwxa2 257 VDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA-GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT 334 (459)
T ss_dssp EECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEE-CTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB-CCSCEEEE
T ss_pred ecccccCCcceeEEEecCCCCCceEECCCCCEEEEe-CCcCCcEEEEEehhhhhhhcccCCccccEEeecc-cCcCcccc
Confidence 33321 223334445556778999999999987 77899999999864321 12221 23345778
Q ss_pred EECCCCCEEEEEeCCCCEEEEecC
Q 011916 429 ATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 429 ~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
+|..+|....|.--|..|.-|++.
T Consensus 335 ~fd~~g~aytslfids~v~kw~~~ 358 (459)
T d1fwxa2 335 AFDGRGNAYTSLFLDSQVVKWNIE 358 (459)
T ss_dssp EECTTSEEEEEETTTTEEEEEEHH
T ss_pred ccCCCceEEEEeeccceEEEEecc
Confidence 898888655566679999999985
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.73 E-value=0.0072 Score=59.96 Aligned_cols=278 Identities=12% Similarity=0.076 Sum_probs=158.9
Q ss_pred CCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCeeeEEecC
Q 011916 178 SQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTR--EGSYISVGTN------LGQVQVWDGTQCKRVRTFGG 249 (475)
Q Consensus 178 ~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~sp--dg~~la~g~~------dg~v~iwd~~~~~~~~~~~~ 249 (475)
.+.++.+..++.|+-.|..+++..-.........-..+.-.| .+..++++.. .|.|.-+|.++++.+..+..
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence 456788888999999999999987665432111111111111 1234444432 36799999999999987752
Q ss_pred CC------------------------------CceE-EEEeC--CCEEEEEeC-------------------CCcEEEEE
Q 011916 250 HQ------------------------------TRAG-VLAWN--SRILSSGSR-------------------DRNILQHD 277 (475)
Q Consensus 250 h~------------------------------~~v~-~l~~~--~~~l~sgs~-------------------dg~I~iwd 277 (475)
-. ..+. .++.+ ..+++.+.. ...|.-.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld 276 (560)
T d1kv9a2 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (560)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence 10 0111 11222 234433321 23455666
Q ss_pred CCCCCccEEEecC--cc-------CCEEEEEEcCCCC---EEEEEeCCCcEEEEECCCCceeEEEeccc-c---------
Q 011916 278 LRVSSDYICKLAG--HK-------SEVCGLKWSHDDR---ELASGGNDNQLLVWNQHSQQPTLRLTEHT-A--------- 335 (475)
Q Consensus 278 ~~~~~~~~~~~~~--h~-------~~V~~l~~s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~~~~h~-~--------- 335 (475)
++ .++..-.++. |. ....-+....+++ .++.++.+|.++++|..+++++.....-. .
T Consensus 277 ~~-tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~ 355 (560)
T d1kv9a2 277 PD-TGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLAT 355 (560)
T ss_dssp TT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTT
T ss_pred CC-ccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhh
Confidence 66 3333322222 21 1111122222332 56778899999999999998775432110 0
Q ss_pred --------------------------ceeEEEECCCCCcEEEEec---------------------------------CC
Q 011916 336 --------------------------AVKAIAWSPHQSSLLASGG---------------------------------GT 356 (475)
Q Consensus 336 --------------------------~v~~l~~sp~~~~ll~sg~---------------------------------Gs 356 (475)
.-...+++|+...+++... +.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (560)
T d1kv9a2 356 GRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAV 435 (560)
T ss_dssp CCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGG
T ss_pred ccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcc
Confidence 0013456666664444321 00
Q ss_pred CCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcce-EEEEECCCCC
Q 011916 357 ADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRV-LYLATSPDGQ 435 (475)
Q Consensus 357 ~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V-~~l~~spdg~ 435 (475)
..|.|.-||+.+|+.+..+........-.+...+..+++ |..||.++.+|..+++.+-++.-..... .-+.+..||+
T Consensus 436 ~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~--G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGk 513 (560)
T d1kv9a2 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQ--GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGR 513 (560)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred cccceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEE--ECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence 136788999999999988876655554445556777776 8899999999999999998876422111 1134445785
Q ss_pred -EEEEEeCC--------------------CCEEEEecCCCCCCC
Q 011916 436 -TIVTGAGD--------------------ETLRFWNVFPSLKAP 458 (475)
Q Consensus 436 -~l~s~s~D--------------------g~I~iW~~~~~~~~~ 458 (475)
||+..+.. +.|.+|.+....+..
T Consensus 514 qyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L~g~~~~~ 557 (560)
T d1kv9a2 514 QYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQLP 557 (560)
T ss_dssp EEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCCCC
T ss_pred EEEEEEeCCCcccccccccccccccCCCCCEEEEEEeCCCCCCC
Confidence 55554433 257777776555443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.68 E-value=0.03 Score=55.68 Aligned_cols=251 Identities=10% Similarity=0.081 Sum_probs=147.7
Q ss_pred CEEEEEcCCeEEEEECCCCcEEEEeeCCC---CCcEEEEEEcC--CCCEEEEEeC------CCeEEEEECCCCeeeEEec
Q 011916 180 NVLAVGLGTCVYLWTASNSKVTRLCDLGP---GDSVCSVQWTR--EGSYISVGTN------LGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 180 ~~la~~~~~~V~lw~~~~~~~~~~~~~~~---~~~V~~v~~sp--dg~~la~g~~------dg~v~iwd~~~~~~~~~~~ 248 (475)
.++.+..++.|+-.|..+++..-...... ...++. .| -+..+++|.. .|.|.-+|+.+++++..+.
T Consensus 123 ~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~---~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 123 LILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTI---APYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCS---CCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCCeEeeccccCceecccccccccccccccc---CCcEECCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence 36777779999999999999877664321 111211 11 2345666654 4899999999999998764
Q ss_pred CCC-------------------------------------Cce-EEEEeC--CCEEEEEeC----------------CCc
Q 011916 249 GHQ-------------------------------------TRA-GVLAWN--SRILSSGSR----------------DRN 272 (475)
Q Consensus 249 ~h~-------------------------------------~~v-~~l~~~--~~~l~sgs~----------------dg~ 272 (475)
... ..+ ..++.+ ..++..+.. ...
T Consensus 200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~s 279 (596)
T d1w6sa_ 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (596)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccc
Confidence 211 001 112222 244444432 234
Q ss_pred EEEEECCCCCccEEEec--Ccc-------CCEEEEEE-cCCCC---EEEEEeCCCcEEEEECCCCceeEEEeccc--c--
Q 011916 273 ILQHDLRVSSDYICKLA--GHK-------SEVCGLKW-SHDDR---ELASGGNDNQLLVWNQHSQQPTLRLTEHT--A-- 335 (475)
Q Consensus 273 I~iwd~~~~~~~~~~~~--~h~-------~~V~~l~~-s~~~~---~lasg~~Dg~I~iwd~~~~~~~~~~~~h~--~-- 335 (475)
|.-.|+++ ++.+-.++ .|. ....-+.. ..+|+ .++.+..+|.++++|..+++++....... .
T Consensus 280 ivAlD~~T-G~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~ 358 (596)
T d1w6sa_ 280 IFGRDADT-GEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF 358 (596)
T ss_dssp EEEEETTT-CCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred cccccccc-ccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccc
Confidence 66777773 44333222 221 11222221 23443 67778899999999999998765322100 0
Q ss_pred ---------c--------------------------eeEEEECCCCCcEEEEec--------------------------
Q 011916 336 ---------A--------------------------VKAIAWSPHQSSLLASGG-------------------------- 354 (475)
Q Consensus 336 ---------~--------------------------v~~l~~sp~~~~ll~sg~-------------------------- 354 (475)
+ -..++++|+...+++-..
T Consensus 359 ~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (596)
T d1w6sa_ 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (596)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccc
Confidence 0 012345555543333210
Q ss_pred -----C-----CCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC----
Q 011916 355 -----G-----TADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG---- 420 (475)
Q Consensus 355 -----G-----s~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~---- 420 (475)
| ..-|.|.-||..+|+.+...........-.++..+..++. |..||.++.+|..+++.+-++..
T Consensus 439 ~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~--G~~Dg~l~A~Da~TGe~LW~~~~~~~~ 516 (596)
T d1w6sa_ 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFY--GTLDGYLKARDSDTGDLLWKFKIPSGA 516 (596)
T ss_dssp EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred ccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEE--ECCCCeEEEEECCCCcEeeEEECCCCc
Confidence 0 0126788999999999887766555444444556777777 88999999999999999988753
Q ss_pred CCcceEEEEECCCCC-EEEE
Q 011916 421 HSLRVLYLATSPDGQ-TIVT 439 (475)
Q Consensus 421 h~~~V~~l~~spdg~-~l~s 439 (475)
+..+++. ..||+ ||+.
T Consensus 517 ~a~P~tY---~~dGkQYvav 533 (596)
T d1w6sa_ 517 IGYPMTY---THKGTQYVAI 533 (596)
T ss_dssp CSCCEEE---EETTEEEEEE
T ss_pred ccCCeEE---EECCEEEEEE
Confidence 3344443 34776 4544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.63 E-value=0.011 Score=58.57 Aligned_cols=268 Identities=9% Similarity=-0.013 Sum_probs=151.2
Q ss_pred CCeEEEEEC-CCCcEEEEeeCCCCC---------cE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCC---
Q 011916 187 GTCVYLWTA-SNSKVTRLCDLGPGD---------SV-CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT--- 252 (475)
Q Consensus 187 ~~~V~lw~~-~~~~~~~~~~~~~~~---------~V-~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~--- 252 (475)
++.|+-.|. ++|+.+=.++..... .+ ..+++. +..|+.++.||.|.-.|.++++.+........
T Consensus 72 ~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~ 149 (571)
T d2ad6a1 72 PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVG 149 (571)
T ss_dssp TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGT
T ss_pred CCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhccccccccccc
Confidence 567777776 457755443321110 00 123332 34688889999999999999998876642211
Q ss_pred -ceE--EEEeCCCEEEEEe------CCCcEEEEECCCCCccEEEecCc--------------------------------
Q 011916 253 -RAG--VLAWNSRILSSGS------RDRNILQHDLRVSSDYICKLAGH-------------------------------- 291 (475)
Q Consensus 253 -~v~--~l~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h-------------------------------- 291 (475)
.++ -+.++ ..++.+. .+|.|.-+|+++ ++.+-.....
T Consensus 150 ~~~t~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~T-G~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (571)
T d2ad6a1 150 STLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKT-GELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGD 227 (571)
T ss_dssp CBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTT-CCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTT
T ss_pred cceeecCeEeC-CeEEEeeccccccccCcEEEEECCC-CcEEEEEeccCCcccccccccccccccccCcccccccccCCc
Confidence 111 12223 4444444 367899999984 4443332211
Q ss_pred -----cCCE-EEEEEcCCCCEEEEEeC----------------CCcEEEEECCCCceeEEEeccccce-----------e
Q 011916 292 -----KSEV-CGLKWSHDDRELASGGN----------------DNQLLVWNQHSQQPTLRLTEHTAAV-----------K 338 (475)
Q Consensus 292 -----~~~V-~~l~~s~~~~~lasg~~----------------Dg~I~iwd~~~~~~~~~~~~h~~~v-----------~ 338 (475)
...+ ...++.++...++.+.. ...+...|.++++.+..+..+...+ .
T Consensus 228 ~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~ 307 (571)
T d2ad6a1 228 AWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLT 307 (571)
T ss_dssp GGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEE
T ss_pred ccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCcccccccccccccee
Confidence 0111 22455566666665543 3467888999999887776432221 1
Q ss_pred EEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCC----------------------------------------
Q 011916 339 AIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTG---------------------------------------- 378 (475)
Q Consensus 339 ~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~---------------------------------------- 378 (475)
.+........+++..+ .+|.++++|..+|+.+......
T Consensus 308 ~~~~~g~~~~~v~~~~--k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg 385 (571)
T d2ad6a1 308 DQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGF 385 (571)
T ss_dssp EEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCS
T ss_pred eeeccCccccceeecc--ccceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccc
Confidence 2222222222444443 8999999999999887532110
Q ss_pred CCeeEEEEcCCCCeEEEEEec-----------------------------------CCCeEEEEECCCCceEEEecCCCc
Q 011916 379 SQVCNLAWSKNVNELVSTHGY-----------------------------------SQNQIMVWKYPSMAKVSTLTGHSL 423 (475)
Q Consensus 379 ~~v~~l~~s~~~~~l~~~~g~-----------------------------------~dg~I~iwd~~~~~~~~~l~~h~~ 423 (475)
..-...+++|+...+++.... ..|.|.-+|+.+++.+-+...- .
T Consensus 386 ~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~-~ 464 (571)
T d2ad6a1 386 HNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK-F 464 (571)
T ss_dssp SCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES-S
T ss_pred cccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCC-C
Confidence 000124667776666542110 1145777788888777655321 1
Q ss_pred ceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 424 RVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 424 ~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
...+-..+-.+.++++|+.||.++-+|..++++.....
T Consensus 465 ~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~ 502 (571)
T d2ad6a1 465 AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 11111112245678889999999999999998775543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.53 E-value=0.02 Score=53.09 Aligned_cols=250 Identities=10% Similarity=0.055 Sum_probs=130.1
Q ss_pred eEEEEECCCCcEEEEe--eCCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEECCCCeeeEEec--CCCCceEEEE-eCCC
Q 011916 189 CVYLWTASNSKVTRLC--DLGPGDSVCSVQWTREGSYISVGTNL-GQVQVWDGTQCKRVRTFG--GHQTRAGVLA-WNSR 262 (475)
Q Consensus 189 ~V~lw~~~~~~~~~~~--~~~~~~~V~~v~~spdg~~la~g~~d-g~v~iwd~~~~~~~~~~~--~h~~~v~~l~-~~~~ 262 (475)
.+.+||..+++..... ...+.....+.++.++|++++.|+.+ ..+.+||..+..-...-. .......+.. .++.
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~ 132 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGR 132 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSC
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCc
Confidence 3789999988754432 22333334466788999999988765 589999988765543222 1122222333 3788
Q ss_pred EEEEEeCC------CcEEEEECCCCCccEEEecC----------cc-----CCEEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 011916 263 ILSSGSRD------RNILQHDLRVSSDYICKLAG----------HK-----SEVCGLKWSHDDRELASGGNDNQLLVWNQ 321 (475)
Q Consensus 263 ~l~sgs~d------g~I~iwd~~~~~~~~~~~~~----------h~-----~~V~~l~~s~~~~~lasg~~Dg~I~iwd~ 321 (475)
+++.|+.+ ..+.+||.... ... .+.. +. ..-..+...++|+.++.++.++.+.++|.
T Consensus 133 v~v~GG~~~~~~~~~~v~~yd~~~~-~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~ 210 (387)
T d1k3ia3 133 VFTIGGSWSGGVFEKNGEVYSPSSK-TWT-SLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 210 (387)
T ss_dssp EEEECCCCCSSSCCCCEEEEETTTT-EEE-EETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred eeeeccccccccccceeeeecCCCC-cee-ecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCc
Confidence 88888753 36889998743 211 1110 00 00111223356777888877777888887
Q ss_pred CCCceeEEEec------ccc--ceeEEEECCCCCcEEEEecCCC------CCeEEEEECCCC---ceeee-e---cCCCC
Q 011916 322 HSQQPTLRLTE------HTA--AVKAIAWSPHQSSLLASGGGTA------DRCIRFWNTSNG---HQLNS-V---DTGSQ 380 (475)
Q Consensus 322 ~~~~~~~~~~~------h~~--~v~~l~~sp~~~~ll~sg~Gs~------d~~I~iwd~~~~---~~~~~-~---~~~~~ 380 (475)
.+......... +.. .-.++.+......+++.|++.. .....+.++... ..... . .....
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ 290 (387)
T d1k3ia3 211 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART 290 (387)
T ss_dssp TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB
T ss_pred ccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccc
Confidence 76643322110 111 1122333333333666664211 112333333221 11111 1 11222
Q ss_pred eeEEEEcCCCCeEEEEEecCC-----------CeEEEEECCCCceEEEecCCCcce--EEEEECCCCCEEEEEeC
Q 011916 381 VCNLAWSKNVNELVSTHGYSQ-----------NQIMVWKYPSMAKVSTLTGHSLRV--LYLATSPDGQTIVTGAG 442 (475)
Q Consensus 381 v~~l~~s~~~~~l~~~~g~~d-----------g~I~iwd~~~~~~~~~l~~h~~~V--~~l~~spdg~~l~s~s~ 442 (475)
-.+....++++.+++ |..+ ..+.+||..+.+-...-.....+. ....+.+||+.|+.|+.
T Consensus 291 ~~~~~~~~dg~i~v~--GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 291 FHTSVVLPDGSTFIT--GGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp SCEEEECTTSCEEEE--CCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cceeeeccCCeEEEE--CCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 334566688887666 4422 147889987654322111111121 12345789999999874
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.47 E-value=0.048 Score=51.68 Aligned_cols=253 Identities=10% Similarity=0.083 Sum_probs=140.3
Q ss_pred cEEEEEEcCCCCEEEEEeC-C----CeEEEEECCCCeeeEEecCCCCceEEEEe--CCCEEEEEeCC-------------
Q 011916 211 SVCSVQWTREGSYISVGTN-L----GQVQVWDGTQCKRVRTFGGHQTRAGVLAW--NSRILSSGSRD------------- 270 (475)
Q Consensus 211 ~V~~v~~spdg~~la~g~~-d----g~v~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sgs~d------------- 270 (475)
.+..++++|+++++|.+-. . ..|+++|+.+++.+...- .......++| ++..|+-...+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~ 204 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-ccccccceEEcCCCCEEEEEEeccccCccccccccc
Confidence 3456778999999987543 2 369999999998765321 1112256778 35555543322
Q ss_pred ---CcEEEEECCCCCcc-EEEecC--ccCCEEEEEEcCCCCEEEEEeC---CCc--EEEEECCCCc--------eeEEEe
Q 011916 271 ---RNILQHDLRVSSDY-ICKLAG--HKSEVCGLKWSHDDRELASGGN---DNQ--LLVWNQHSQQ--------PTLRLT 331 (475)
Q Consensus 271 ---g~I~iwd~~~~~~~-~~~~~~--h~~~V~~l~~s~~~~~lasg~~---Dg~--I~iwd~~~~~--------~~~~~~ 331 (475)
..|..|.+...... ...+.. ....+..+..+.++++++.... +.. +.+.|+.... ....+.
T Consensus 205 ~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 284 (430)
T d1qfma1 205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (430)
T ss_dssp CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeec
Confidence 25777777644332 233333 2345777888999998765322 233 4455544321 112222
Q ss_pred ccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCcee--e-eec-CCCCeeEEEEcCCCCeEEEEEecCC--CeEE
Q 011916 332 EHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQL--N-SVD-TGSQVCNLAWSKNVNELVSTHGYSQ--NQIM 405 (475)
Q Consensus 332 ~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~--~-~~~-~~~~v~~l~~s~~~~~l~~~~g~~d--g~I~ 405 (475)
.....+.-+. +.++..++.+.-+..++.|...++...... . .+. +...+..-.+...+.+|++. ...+ ..|+
T Consensus 285 ~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~-~~~~~~~~l~ 362 (430)
T d1qfma1 285 NFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC-YLHDVKNTLQ 362 (430)
T ss_dssp SSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE-EEETTEEEEE
T ss_pred ccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEE-EEcCCEeEEE
Confidence 2223333222 223344444433334577877787765321 2 222 23345544555555666652 2233 4689
Q ss_pred EEECCCCceEEEecCCCcceEEEEECCCCCEEEEE-eC---CCCEEEEecCCCCCCCCcccCCcc
Q 011916 406 VWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG-AG---DETLRFWNVFPSLKAPALVKDTSL 466 (475)
Q Consensus 406 iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~-s~---Dg~I~iW~~~~~~~~~~~~~~~~v 466 (475)
+++..++..........+.|..+...++...+... +. =.++.-+|+.+++....+..+..|
T Consensus 363 v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~~~~~k~~~v 427 (430)
T d1qfma1 363 LHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEPRVFREVTV 427 (430)
T ss_dssp EEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCCEEEEECCC
T ss_pred EEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcceeeEeccCC
Confidence 99998887766555555667666655655543332 22 267888999888766555544444
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.44 E-value=0.023 Score=56.29 Aligned_cols=94 Identities=13% Similarity=0.078 Sum_probs=64.0
Q ss_pred CeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecC----CCcceEEEEECCCC
Q 011916 359 RCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTG----HSLRVLYLATSPDG 434 (475)
Q Consensus 359 ~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~----h~~~V~~l~~spdg 434 (475)
|.|.-||+.+|+.+.......+...=..+..+..+++ |..||.++.+|..+++.+-++.. +..+++ |..||
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~--G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~t---y~~~G 531 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQ--GTADGRLVAYHAATGEKLWEAPTGTGVVAAPST---YMVDG 531 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEE---EEETT
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEE--ECCCCeEEEEECCCCcEeEEEECCCCccccCEE---EEECC
Confidence 4688899999999988876554443344556778887 88999999999999999988764 233333 44477
Q ss_pred C-EEEEEeCC----------------CCEEEEecCCCCCC
Q 011916 435 Q-TIVTGAGD----------------ETLRFWNVFPSLKA 457 (475)
Q Consensus 435 ~-~l~s~s~D----------------g~I~iW~~~~~~~~ 457 (475)
+ ||+..+.- +.|.+|.+....+.
T Consensus 532 kQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l~g~~~~ 571 (573)
T d1kb0a2 532 RQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKARM 571 (573)
T ss_dssp EEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBCCC
T ss_pred EEEEEEEeCCCcccccccccccCCCCCEEEEEEeCCcCCC
Confidence 6 44443321 24677777655443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.41 E-value=0.022 Score=56.75 Aligned_cols=237 Identities=8% Similarity=0.007 Sum_probs=138.2
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeEEecCCCC----ceE-EEEeCCCEEEEEeC------CCcEEEEECCCCCccEEEec
Q 011916 221 GSYISVGTNLGQVQVWDGTQCKRVRTFGGHQT----RAG-VLAWNSRILSSGSR------DRNILQHDLRVSSDYICKLA 289 (475)
Q Consensus 221 g~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~----~v~-~l~~~~~~l~sgs~------dg~I~iwd~~~~~~~~~~~~ 289 (475)
+.+++.++.||.|.-.|.++++.+..+..... .++ .-...++.++.|.. .|.|.-+|.++ ++.+-++.
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~T-G~~~W~~~ 199 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKT-GEQVWRAY 199 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTT-CCEEEEEE
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCC-CcEEEEee
Confidence 34788999999999999999999988753211 111 11123455555543 48899999984 44443322
Q ss_pred Ccc-------------------------------------C-CEEEEEEcCCCCEEEEEeC----------------CCc
Q 011916 290 GHK-------------------------------------S-EVCGLKWSHDDRELASGGN----------------DNQ 315 (475)
Q Consensus 290 ~h~-------------------------------------~-~V~~l~~s~~~~~lasg~~----------------Dg~ 315 (475)
... . .-..+.+.+...++..+.. ...
T Consensus 200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~s 279 (596)
T d1w6sa_ 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMT 279 (596)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSE
T ss_pred ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccc
Confidence 110 0 1123445565666655532 235
Q ss_pred EEEEECCCCceeEEEec--ccc-------ceeEEE-ECCCCC--cEEEEecCCCCCeEEEEECCCCceeeeecCCC----
Q 011916 316 LLVWNQHSQQPTLRLTE--HTA-------AVKAIA-WSPHQS--SLLASGGGTADRCIRFWNTSNGHQLNSVDTGS---- 379 (475)
Q Consensus 316 I~iwd~~~~~~~~~~~~--h~~-------~v~~l~-~sp~~~--~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~---- 379 (475)
|.-.|+++++.+..+.. |.. ...-+. -..+++ .+++... .+|.+.++|..+|+.+...+...
T Consensus 280 ivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~--k~G~~~vlDr~tG~~i~~~~~~~~~~~ 357 (596)
T d1w6sa_ 280 IFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVNV 357 (596)
T ss_dssp EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred ccccccccccccccccceeccccCCccccceeeeeccccccccccceeccc--cccceeeecCCCCceeeeccccccccc
Confidence 88889999998876654 211 111111 123333 2444443 89999999999998875432110
Q ss_pred ------------------------------------CeeEEEEcCCCCeEEEEEe-------------------------
Q 011916 380 ------------------------------------QVCNLAWSKNVNELVSTHG------------------------- 398 (475)
Q Consensus 380 ------------------------------------~v~~l~~s~~~~~l~~~~g------------------------- 398 (475)
.-...+++|+...+++-..
T Consensus 358 ~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~ 437 (596)
T d1w6sa_ 358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN 437 (596)
T ss_dssp EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccc
Confidence 0012355666555544110
Q ss_pred ------------cCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCcc
Q 011916 399 ------------YSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPALV 461 (475)
Q Consensus 399 ------------~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~~ 461 (475)
..-|.|.-||..+++.+-... +...+..-.++-.|.+++.|+.||.++-+|..+++......
T Consensus 438 ~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~ 511 (596)
T d1w6sa_ 438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (596)
T ss_dssp EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccCcccCcccCCCcceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence 001467778888887765543 11122211223357788889999999999999999876543
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.38 E-value=0.019 Score=56.83 Aligned_cols=275 Identities=10% Similarity=0.052 Sum_probs=160.5
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCC---------CcE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPG---------DSV-CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~---------~~V-~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.+++++.++.|+-.|..+|+.+=.++.... ..+ ..++. .+..++.++.+|.|.-.|..+++.+..+.
T Consensus 67 g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~ 144 (560)
T d1kv9a2 67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQ 144 (560)
T ss_dssp TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccC
Confidence 4566677788999999999987654431100 000 11111 24578889999999999999999988775
Q ss_pred CCCC--c----eEEEEeCCCEEEEEe------CCCcEEEEECCCCCccEEEecCc-------------------------
Q 011916 249 GHQT--R----AGVLAWNSRILSSGS------RDRNILQHDLRVSSDYICKLAGH------------------------- 291 (475)
Q Consensus 249 ~h~~--~----v~~l~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h------------------------- 291 (475)
.+.. . ..-+.+ ...++.+. ..|.|.-+|.++ ++.+-++..-
T Consensus 145 ~~~~~~~~~~~~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~T-G~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (560)
T d1kv9a2 145 TTDPAKPYSITGAPRVV-KGKVIIGNGGAEYGVRGFVSAYDADT-GKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQY 222 (560)
T ss_dssp CSCTTSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETTT-CCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCH
T ss_pred ccCcccceeeeeeeeee-cCcccccccceeccccceEEEEECCC-ceEEeeeeeccccccCCcccccccccccccccccc
Confidence 3221 1 111122 33444433 236788899884 4443333210
Q ss_pred -----cCCE-EEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCceeEEEeccccce---------
Q 011916 292 -----KSEV-CGLKWSHDDRELASGGN-------------------DNQLLVWNQHSQQPTLRLTEHTAAV--------- 337 (475)
Q Consensus 292 -----~~~V-~~l~~s~~~~~lasg~~-------------------Dg~I~iwd~~~~~~~~~~~~h~~~v--------- 337 (475)
...+ ..+.+.+...++..+.. ...|.-.|+++++.+..+......+
T Consensus 223 ~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~ 302 (560)
T d1kv9a2 223 WKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQI 302 (560)
T ss_dssp HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred ccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEecccccccccccccee
Confidence 0111 12455566666554321 2457778899998877665422211
Q ss_pred --eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC------------------------------------
Q 011916 338 --KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS------------------------------------ 379 (475)
Q Consensus 338 --~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~------------------------------------ 379 (475)
..+........+++.+ +.+|.++++|..+|+.+.......
T Consensus 303 ~l~~~~~~g~~~~~v~~~--~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg 380 (560)
T d1kv9a2 303 TLAELNIDGKPRKVLMQA--PKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA 380 (560)
T ss_dssp EEEEEEETTEEEEEEEEC--CTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred eeeeeecCCceeeeeeec--CccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccc
Confidence 2222222222345544 489999999999999876543211
Q ss_pred -CeeEEEEcCCCCeEEEEEec----------------------------------CCCeEEEEECCCCceEEEecCCCcc
Q 011916 380 -QVCNLAWSKNVNELVSTHGY----------------------------------SQNQIMVWKYPSMAKVSTLTGHSLR 424 (475)
Q Consensus 380 -~v~~l~~s~~~~~l~~~~g~----------------------------------~dg~I~iwd~~~~~~~~~l~~h~~~ 424 (475)
.-...+++|+...+++.... ..|.|.-||+.+++.+-..... ..
T Consensus 381 ~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~-~~ 459 (560)
T d1kv9a2 381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP-TH 459 (560)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES-SS
T ss_pred cccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC-CC
Confidence 01234566776666653210 1256888899999887766422 11
Q ss_pred eEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 425 VLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 425 V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
...-.+.-.|.+++.|+.||.++-+|..+++.....
T Consensus 460 ~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~ 495 (560)
T d1kv9a2 460 WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (560)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEE
Confidence 111122335668888999999999999999877553
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.37 E-value=0.034 Score=49.30 Aligned_cols=188 Identities=8% Similarity=0.127 Sum_probs=126.1
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCC-cEEEEeeCCC---CCcEEEEEEcCCCCEEEEEe---C----CCeEEEEECC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNS-KVTRLCDLGP---GDSVCSVQWTREGSYISVGT---N----LGQVQVWDGT 239 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~-~~~~~~~~~~---~~~V~~v~~spdg~~la~g~---~----dg~v~iwd~~ 239 (475)
|.--.|-.++.|+.-.+..||-|+++.. ...+.++... +..|..-..++++++++..+ . .|.+++|.++
T Consensus 105 VvfWkWis~~~L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~e 184 (327)
T d1utca2 105 VTFWKWISLNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 184 (327)
T ss_dssp CCEEEESSSSEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT
T ss_pred cEEEEecCCCEEEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEec
Confidence 3447788999999999999999999543 4566666422 36788888899999887643 2 3778999977
Q ss_pred CCeeeEEecCCCCceEEEEeCC-----CEEEEEe---CCCcEEEEECCCCCc--c-----EEEe-c---CccCCEEEEEE
Q 011916 240 QCKRVRTFGGHQTRAGVLAWNS-----RILSSGS---RDRNILQHDLRVSSD--Y-----ICKL-A---GHKSEVCGLKW 300 (475)
Q Consensus 240 ~~~~~~~~~~h~~~v~~l~~~~-----~~l~sgs---~dg~I~iwd~~~~~~--~-----~~~~-~---~h~~~V~~l~~ 300 (475)
.. ..+.++||.+....+..+| .+++.+. ..+.++|.++..... . ...+ . .-.+--.++..
T Consensus 185 r~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqv 263 (327)
T d1utca2 185 RK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 263 (327)
T ss_dssp TT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEE
T ss_pred cC-cCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEe
Confidence 54 4456778877666666643 2343332 236788888864221 1 0111 1 12345667888
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEE
Q 011916 301 SHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIR 362 (475)
Q Consensus 301 s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~ 362 (475)
|+.-..+..-+.-|.|++||+.++.++..-+-....|..-+-......+++.. .+|.|.
T Consensus 264 s~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VN---r~GqVl 322 (327)
T d1utca2 264 SEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVN---RKGQVL 322 (327)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEE---TTSEEE
T ss_pred eccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEEC---CCCeEE
Confidence 88778888899999999999999999887665566665545444544455554 455443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.057 Score=47.52 Aligned_cols=232 Identities=11% Similarity=0.000 Sum_probs=144.8
Q ss_pred EEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeC--CCEEEEE-eCCCcEEEEECCCCC---ccEEEecCccCCEE
Q 011916 223 YISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWN--SRILSSG-SRDRNILQHDLRVSS---DYICKLAGHKSEVC 296 (475)
Q Consensus 223 ~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~sg-s~dg~I~iwd~~~~~---~~~~~~~~h~~~V~ 296 (475)
+|+.+.. ..|+-.++.+......+. ....+.++.|+ .+.|... ...+.|.-.++.... ............+.
T Consensus 3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~ 80 (266)
T d1ijqa1 3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (266)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence 3444444 358888887655444433 44567788885 4555544 456667766664211 12223333345577
Q ss_pred EEEEcCCCCEEEEE-eCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeee
Q 011916 297 GLKWSHDDRELASG-GNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSV 375 (475)
Q Consensus 297 ~l~~s~~~~~lasg-~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~ 375 (475)
+|++...+..|..+ ...+.|.+.++........+.........++..|...+++.+..| ..+.|.-.++.........
T Consensus 81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~dGs~~~~l~ 159 (266)
T d1ijqa1 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGLNGVDIYSLV 159 (266)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEETTSCCEEEEE
T ss_pred eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEeccCCCceeccc
Confidence 88887755555554 456789999998766555555556678999999988778877532 4567888887655544444
Q ss_pred c-CCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEec--CCCcceEEEEECCCCCEEEEEeCCCCEEEEecC
Q 011916 376 D-TGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLT--GHSLRVLYLATSPDGQTIVTGAGDETLRFWNVF 452 (475)
Q Consensus 376 ~-~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~ 452 (475)
. .-.....+++.+.++.|+.+ ....+.|...++........+. .......+|++. ++....+-..++.|...+..
T Consensus 160 ~~~~~~p~gl~iD~~~~~lYw~-d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~ 237 (266)
T d1ijqa1 160 TENIQWPNGITLDLLSGRLYWV-DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (266)
T ss_dssp CSSCSCEEEEEEETTTTEEEEE-ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred ccccceeeEEEeeccccEEEEe-cCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECC
Confidence 3 33567899999998888875 4567899999986654333332 233446778875 33344444467778777777
Q ss_pred CCCCCCC
Q 011916 453 PSLKAPA 459 (475)
Q Consensus 453 ~~~~~~~ 459 (475)
++.....
T Consensus 238 ~g~~~~~ 244 (266)
T d1ijqa1 238 TGSDVNL 244 (266)
T ss_dssp TCCCCEE
T ss_pred CCcceEE
Confidence 7665443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.22 E-value=0.028 Score=55.61 Aligned_cols=275 Identities=9% Similarity=0.054 Sum_probs=155.6
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCC---------CcE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEec
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPG---------DSV-CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~---------~~V-~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~ 248 (475)
+.+++++.++.|+-+|..+|+.+=.++.... ..+ ..+... +..++.++.|+.+.-.|..+++.+....
T Consensus 78 g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~~~ 155 (573)
T d1kb0a2 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWHQN 155 (573)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceeccc
Confidence 3455566678899999999986654432110 011 112222 3467788889999999999999887654
Q ss_pred CCC---CceE----EEEeCCCEEEEEe------CCCcEEEEECCCCCccEEEecCc------------------------
Q 011916 249 GHQ---TRAG----VLAWNSRILSSGS------RDRNILQHDLRVSSDYICKLAGH------------------------ 291 (475)
Q Consensus 249 ~h~---~~v~----~l~~~~~~l~sgs------~dg~I~iwd~~~~~~~~~~~~~h------------------------ 291 (475)
... ..+. .+.+ ...+++++ ..|.|..+|.+ .++.+-.+...
T Consensus 156 ~~~~~~~~~~~~~~p~v~-~~~vivg~~~~~~~~~G~v~a~D~~-TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~ 233 (573)
T d1kb0a2 156 TFEGQKGSLTITGAPRVF-KGKVIIGNGGAEYGVRGYITAYDAE-TGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (573)
T ss_dssp TTTTCCSSCBCCSCCEEE-TTEEEECCBCTTTCCBCEEEEEETT-TCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred CccCCcceEEeecceEEE-eccEEEeeccccccccceEEEEecC-CccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence 321 1111 1222 34444443 24679999998 44444332111
Q ss_pred -------cCCE-EEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCceeEEEeccccce-------
Q 011916 292 -------KSEV-CGLKWSHDDRELASGGN-------------------DNQLLVWNQHSQQPTLRLTEHTAAV------- 337 (475)
Q Consensus 292 -------~~~V-~~l~~s~~~~~lasg~~-------------------Dg~I~iwd~~~~~~~~~~~~h~~~v------- 337 (475)
...+ ....+.++..++..+.. ...|...|+++++....+......+
T Consensus 234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~ 313 (573)
T d1kb0a2 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (573)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence 0111 12445555555544321 1246777888888776654322211
Q ss_pred ----eEEEECCCCCcEEEEecCCCCCeEEEEECCCCceeeeecCCC----------------------------------
Q 011916 338 ----KAIAWSPHQSSLLASGGGTADRCIRFWNTSNGHQLNSVDTGS---------------------------------- 379 (475)
Q Consensus 338 ----~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~~---------------------------------- 379 (475)
..+........+++. ++.+|.++++|..+|+.+.......
T Consensus 314 ~~~l~~~~~~g~~~~~v~~--~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~G 391 (573)
T d1kb0a2 314 PMILADIKIAGKPRKVILH--APKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYG 391 (573)
T ss_dssp CCEEEEEEETTEEEEEEEE--CCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTC
T ss_pred eeeecceecCCCceeeeee--ccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccC
Confidence 122222222223444 3489999999999999876542110
Q ss_pred --CeeEEEEcCCCCeEEEEEec-----------------------------------------CCCeEEEEECCCCceEE
Q 011916 380 --QVCNLAWSKNVNELVSTHGY-----------------------------------------SQNQIMVWKYPSMAKVS 416 (475)
Q Consensus 380 --~v~~l~~s~~~~~l~~~~g~-----------------------------------------~dg~I~iwd~~~~~~~~ 416 (475)
.-...+++|+...+++.... .-|.|.-||+.+++.+-
T Consensus 392 g~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W 471 (573)
T d1kb0a2 392 AHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW 471 (573)
T ss_dssp SSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred CccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEe
Confidence 11224567776666652110 01357778888888877
Q ss_pred EecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 417 TLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 417 ~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
..+... +...=..+-.|.+|++|+.||.++.+|..++++....
T Consensus 472 ~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~ 514 (573)
T d1kb0a2 472 SVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (573)
T ss_dssp EEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred eecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence 665322 1111112336778888999999999999999987554
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.15 E-value=0.1 Score=51.46 Aligned_cols=82 Identities=10% Similarity=0.005 Sum_probs=58.5
Q ss_pred CCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcc-eEEEEECCCCC-
Q 011916 358 DRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLR-VLYLATSPDGQ- 435 (475)
Q Consensus 358 d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~-V~~l~~spdg~- 435 (475)
.|.|.-+|+.+|+.+.......++..-..+..+..+++ |..||.++.+|..+++.+-+++-.... -.-+.|..||+
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~--Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q 542 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFT--GTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ 542 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEE--ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEE--eCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence 36788999999999988876666554445567777777 889999999999999999888642211 11145556885
Q ss_pred EEEEEe
Q 011916 436 TIVTGA 441 (475)
Q Consensus 436 ~l~s~s 441 (475)
||+..+
T Consensus 543 Yv~i~a 548 (582)
T d1flga_ 543 YLGVTV 548 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 555443
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.98 E-value=0.061 Score=53.22 Aligned_cols=275 Identities=12% Similarity=0.035 Sum_probs=152.1
Q ss_pred CCEEEEEcCCeEEEEECCCCcEEEEeeCCCC-------CcE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecC-
Q 011916 179 QNVLAVGLGTCVYLWTASNSKVTRLCDLGPG-------DSV-CSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGG- 249 (475)
Q Consensus 179 ~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~-------~~V-~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~- 249 (475)
+.+++++.++.|+-.|..+|+.+=.++.... ..+ ..++. .+..++.++.++.+.-.|..+++.+.....
T Consensus 69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~--~~~~i~~~t~~~~l~alda~tG~~~W~~~~~ 146 (582)
T d1flga_ 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE--eCCceEEecCCCeEEEecccccceeeeeccc
Confidence 4566777788899999999987655432111 001 11222 245688899999999999999988754331
Q ss_pred -CCC-----ceEEEEeC---CCEEEEEe-------CCCcEEEEECCCCCccEEEecCcc---------------------
Q 011916 250 -HQT-----RAGVLAWN---SRILSSGS-------RDRNILQHDLRVSSDYICKLAGHK--------------------- 292 (475)
Q Consensus 250 -h~~-----~v~~l~~~---~~~l~sgs-------~dg~I~iwd~~~~~~~~~~~~~h~--------------------- 292 (475)
+.. ....+.-+ ...++..+ ..+.|.-+|.++ ++.+-++....
T Consensus 147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~t-G~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~ 225 (582)
T d1flga_ 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDT-GEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS 225 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTT-CCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCC-CcEEEEEeccCCcccccccccccccccccccc
Confidence 110 01111111 23333321 245577777763 33222221110
Q ss_pred -------------------CCE-EEEEEcCCCCEEEEEeC------------------------CCcEEEEECCCCceeE
Q 011916 293 -------------------SEV-CGLKWSHDDRELASGGN------------------------DNQLLVWNQHSQQPTL 328 (475)
Q Consensus 293 -------------------~~V-~~l~~s~~~~~lasg~~------------------------Dg~I~iwd~~~~~~~~ 328 (475)
..+ ..+++.+...+++.+.. ...|.-.|.++++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W 305 (582)
T d1flga_ 226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW 305 (582)
T ss_dssp SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence 111 23556666666665431 2357778888998877
Q ss_pred EEec--cccc---------eeEEEECCCCCc--EEEEecCCCCCeEEEEECCCCceeeeecCC-----------------
Q 011916 329 RLTE--HTAA---------VKAIAWSPHQSS--LLASGGGTADRCIRFWNTSNGHQLNSVDTG----------------- 378 (475)
Q Consensus 329 ~~~~--h~~~---------v~~l~~sp~~~~--ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~~----------------- 378 (475)
.+.. |... +..+... ++.. .++.. +.++.++++|..+|+.+......
T Consensus 306 ~~q~~~~D~wd~d~~~~p~l~d~~~~-~g~~~~~v~~~--~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~ 382 (582)
T d1flga_ 306 FYQHTPNDAWDFSGNNELVLFDYKAK-DGKIVKATAHA--DRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPV 382 (582)
T ss_dssp EEESSTTCCSCCCCCCCCEEEEEECS-SSCEEEEEEEE--CTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred cccccccccccccccccccccccccc-cccccceeEee--cccccEEeecccCCcccccccccCccccccccccccccce
Confidence 6654 2211 1122222 2321 33333 48999999999999876432110
Q ss_pred -----------------------------CCeeEEEEcCCCCeEEEEEe-------------------------------
Q 011916 379 -----------------------------SQVCNLAWSKNVNELVSTHG------------------------------- 398 (475)
Q Consensus 379 -----------------------------~~v~~l~~s~~~~~l~~~~g------------------------------- 398 (475)
..-...+++|+...+++...
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (582)
T d1flga_ 383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD 462 (582)
T ss_dssp ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred eccccccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCcccccccc
Confidence 01112345555555544211
Q ss_pred cCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEEEEecCCCCCCCCc
Q 011916 399 YSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLRFWNVFPSLKAPAL 460 (475)
Q Consensus 399 ~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~iW~~~~~~~~~~~ 460 (475)
...|.|.-+|+.+++.+-+...+. ++..-..+..|.++++|+.||.++-+|..++++....
T Consensus 463 ~~~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~ 523 (582)
T d1flga_ 463 DHVGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp SCSEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEE
Confidence 112567788888888877765332 2221122346778888999999999999999987553
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=96.87 E-value=0.078 Score=48.80 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=67.1
Q ss_pred EEEEEcCCCCEEEEEeCC-----C------eEEEEECCCCeeeE--Eec-CCCCceEEEEe--CCCEEEEEeCC-CcEEE
Q 011916 213 CSVQWTREGSYISVGTNL-----G------QVQVWDGTQCKRVR--TFG-GHQTRAGVLAW--NSRILSSGSRD-RNILQ 275 (475)
Q Consensus 213 ~~v~~spdg~~la~g~~d-----g------~v~iwd~~~~~~~~--~~~-~h~~~v~~l~~--~~~~l~sgs~d-g~I~i 275 (475)
.......+|+.++.|+.+ + .+.+||..+++-.. .+. .|.......++ ++.+++.|+.+ ..+.+
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~ 102 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence 334445578888877742 1 37789998765432 222 23222233333 67888888655 58999
Q ss_pred EECCCCCccEEE-ecCccCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCc
Q 011916 276 HDLRVSSDYICK-LAGHKSEVCGLKWSHDDRELASGGND------NQLLVWNQHSQQ 325 (475)
Q Consensus 276 wd~~~~~~~~~~-~~~h~~~V~~l~~s~~~~~lasg~~D------g~I~iwd~~~~~ 325 (475)
||..... .... .......-.+.+..+||+.++.|+.+ +.+.+||..+.+
T Consensus 103 yd~~~~~-w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~ 158 (387)
T d1k3ia3 103 YDSSSDS-WIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 158 (387)
T ss_dssp EEGGGTE-EEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCccCc-ccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence 9987432 2111 11111223456677899999998753 368999998765
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.11 Score=48.07 Aligned_cols=174 Identities=12% Similarity=0.015 Sum_probs=103.6
Q ss_pred eeEEecCCC-CEEEEEcCCeEEEEECC-----------CCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Q 011916 171 LNLVDWSSQ-NVLAVGLGTCVYLWTAS-----------NSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDG 238 (475)
Q Consensus 171 v~~l~ws~~-~~la~~~~~~V~lw~~~-----------~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~ 238 (475)
++.++.++. .+++++....+.|-... .........+ ..|..++|+.+ .|++... +.+..+++
T Consensus 39 ~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~i---p~v~~vafs~d--~l~v~~~-~~l~~~~~ 112 (381)
T d1xipa_ 39 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEI---PDVIFVCFHGD--QVLVSTR-NALYSLDL 112 (381)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEEC---TTEEEEEEETT--EEEEEES-SEEEEEES
T ss_pred cceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCC---CCeEEEEeeCC--EEEEEeC-CCEEEEEe
Confidence 566888875 67777777778887632 1121222221 35889999744 5666544 67888887
Q ss_pred CCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEec-----CccCCEEEEEEcCCCCEEEEEeCC
Q 011916 239 TQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLA-----GHKSEVCGLKWSHDDRELASGGND 313 (475)
Q Consensus 239 ~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~s~~~~~lasg~~D 313 (475)
..-........-...+..+.+++..++....++.+.++++..... ..... .-.+.+.++.|++.|.+++++..+
T Consensus 113 ~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~-~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~ 191 (381)
T d1xipa_ 113 EELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST-KQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNG 191 (381)
T ss_dssp SSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE-EEEEESEEEEEECSSEEEEEETTSCEEEEEEETT
T ss_pred eccccccccccccccccceecCCceeEEEecCCCEEEEEeccCcc-ccccCCcceEEecCCceEEEEeCCcEEEEEeCCC
Confidence 765444444444567899999999999999999999999974332 11111 123557777888777777776432
Q ss_pred CcEEE-EECCCCceeEEEeccccceeEEEECCCCCcEEEE
Q 011916 314 NQLLV-WNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLAS 352 (475)
Q Consensus 314 g~I~i-wd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~s 352 (475)
+ ..+ -++.....+.........|.+|.|-.+..++++-
T Consensus 192 ~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 192 E-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp E-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred c-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 2 111 1111111110001134568899998766544443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.05 E-value=0.6 Score=43.63 Aligned_cols=255 Identities=13% Similarity=0.054 Sum_probs=133.9
Q ss_pred CceeccCCCCCC--CCceeEEecCCC-CEEEEEc--CC----eEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEE
Q 011916 156 PHKVLDAPSLQD--DFYLNLVDWSSQ-NVLAVGL--GT----CVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISV 226 (475)
Q Consensus 156 p~~~l~~p~~~~--d~~v~~l~ws~~-~~la~~~--~~----~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~ 226 (475)
.+-+||.-.+.. .+++..+++||+ +.++.+. +| .|++.|+.+++.+.... . ......++|.+|++.|+.
T Consensus 110 ~evllD~n~la~~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~-~~~~~~~~W~~D~~~~~Y 187 (430)
T d1qfma1 110 ARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-E-RVKFSCMAWTHDGKGMFY 187 (430)
T ss_dssp CEEEECGGGGCSSSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-E-EECSCCEEECTTSSEEEE
T ss_pred eeeecchhhhcccccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-c-cccccceEEcCCCCEEEE
Confidence 445566544433 344556677887 5666654 33 69999999998765331 1 111246889999998876
Q ss_pred EeCC----------------CeEEEEECCCCee--eEEecCCC--CceEEEEe--CCCEEEEEe---CCCc--EEEEECC
Q 011916 227 GTNL----------------GQVQVWDGTQCKR--VRTFGGHQ--TRAGVLAW--NSRILSSGS---RDRN--ILQHDLR 279 (475)
Q Consensus 227 g~~d----------------g~v~iwd~~~~~~--~~~~~~h~--~~v~~l~~--~~~~l~sgs---~dg~--I~iwd~~ 279 (475)
...+ ..|..+.+.+... +..+.... ..+..+.. ++.+++... .+.. +.+.|+.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~ 267 (430)
T d1qfma1 188 NAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQ 267 (430)
T ss_dssp EECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGG
T ss_pred EEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCC
Confidence 5432 2577777766432 23333332 23434433 566665432 2333 3444543
Q ss_pred CCCc-------cEEEecCccCCEEEEEEcCCCCEEEEEe---CCCcEEEEECCCCce--eEE-EeccccceeEEEECCCC
Q 011916 280 VSSD-------YICKLAGHKSEVCGLKWSHDDRELASGG---NDNQLLVWNQHSQQP--TLR-LTEHTAAVKAIAWSPHQ 346 (475)
Q Consensus 280 ~~~~-------~~~~~~~h~~~V~~l~~s~~~~~lasg~---~Dg~I~iwd~~~~~~--~~~-~~~h~~~v~~l~~sp~~ 346 (475)
.... ...........+.-+.. .++.+++... .++.|...++..... ... +..+...+..-.+...+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~ 346 (430)
T d1qfma1 268 QESNGITGILKWVKLIDNFEGEYDYVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRS 346 (430)
T ss_dssp GSSSSSCSSCCCEEEECSSSSCEEEEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETT
T ss_pred CcccccccccceeEeecccccceEEEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEEC
Confidence 2211 12223333333333332 2333333332 235677777765432 123 33344445444444444
Q ss_pred CcEEEEecCCCCCeEEEEECCCCceeeeecC-CCCeeEEEEcCCCCeEEEEEe--cCCCeEEEEECCCCc
Q 011916 347 SSLLASGGGTADRCIRFWNTSNGHQLNSVDT-GSQVCNLAWSKNVNELVSTHG--YSQNQIMVWKYPSMA 413 (475)
Q Consensus 347 ~~ll~sg~Gs~d~~I~iwd~~~~~~~~~~~~-~~~v~~l~~s~~~~~l~~~~g--~~dg~I~iwd~~~~~ 413 (475)
.+|++..--..-..|++++..++........ .+.+..+...++...+..... ..-..++-+|+.+++
T Consensus 347 ~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 347 NFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp TEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 5566554211235689999988876555432 244555555566665554211 134678889988774
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.76 E-value=0.57 Score=42.51 Aligned_cols=185 Identities=11% Similarity=0.169 Sum_probs=111.0
Q ss_pred CEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEc------CCCCEEEEEeC--C--CcEEEEECCC-CceeEEE
Q 011916 262 RILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWS------HDDRELASGGN--D--NQLLVWNQHS-QQPTLRL 330 (475)
Q Consensus 262 ~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s------~~~~~lasg~~--D--g~I~iwd~~~-~~~~~~~ 330 (475)
.+++.....+-|.+||+. ++.+..+. .+.+..+..- ....-|+++++ + ..|.+|.+.. ...+..+
T Consensus 41 SlI~gTdK~~Gl~vYdL~--G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~ 116 (353)
T d1h6la_ 41 SKLITTNKKSGLAVYSLE--GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI 116 (353)
T ss_dssp CEEEEEETTSCCEEEETT--CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred cEEEEEcCcCCEEEEcCC--CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence 466666677779999985 55555543 2445554432 22223555552 2 3677887753 2233333
Q ss_pred ecc-------ccceeEEEE--CCC-CCcEEEEecCCCCCeEEEEECC---CC----ceeeeecCCCCeeEEEEcCCCCeE
Q 011916 331 TEH-------TAAVKAIAW--SPH-QSSLLASGGGTADRCIRFWNTS---NG----HQLNSVDTGSQVCNLAWSKNVNEL 393 (475)
Q Consensus 331 ~~h-------~~~v~~l~~--sp~-~~~ll~sg~Gs~d~~I~iwd~~---~~----~~~~~~~~~~~v~~l~~s~~~~~l 393 (475)
... ...+..+++ ++. +...+++.. .+|.+..|.+. .+ +.++.+....++..|.+....+.|
T Consensus 117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~--k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~L 194 (353)
T d1h6la_ 117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG--KEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSL 194 (353)
T ss_dssp SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEE
T ss_pred cccccccccccCcceEEEEEecCCCCeEEEEEEc--CCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcE
Confidence 221 123667777 665 443444443 78888888653 33 456677788999999999999999
Q ss_pred EEEEecCCCeEEEEECCC-----CceEEEecC--CCcceEEEEEC--CC--CCEEEEEeCCCCEEEEecCCC
Q 011916 394 VSTHGYSQNQIMVWKYPS-----MAKVSTLTG--HSLRVLYLATS--PD--GQTIVTGAGDETLRFWNVFPS 454 (475)
Q Consensus 394 ~~~~g~~dg~I~iwd~~~-----~~~~~~l~~--h~~~V~~l~~s--pd--g~~l~s~s~Dg~I~iW~~~~~ 454 (475)
++ +.++..|..+++.. ...+....+ ....+-.|+.- .+ |-+|+|.-.|.+..||+....
T Consensus 195 yi--sEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YI--AEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EE--EETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EE--ecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99 76777676666531 222323322 35567777653 33 334555556888999998754
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.61 E-value=0.78 Score=41.58 Aligned_cols=188 Identities=9% Similarity=0.114 Sum_probs=110.9
Q ss_pred EEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEc------CCCCEEEEEeC--C--CeEEEEECCC-CeeeEEecC
Q 011916 181 VLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWT------REGSYISVGTN--L--GQVQVWDGTQ-CKRVRTFGG 249 (475)
Q Consensus 181 ~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~s------pdg~~la~g~~--d--g~v~iwd~~~-~~~~~~~~~ 249 (475)
++.....+.|++||+. |+.++.... +.+..|..- ....-|++++. + -+|.+|.+.. ...+..+..
T Consensus 43 I~gTdK~~Gl~vYdL~-G~~l~~~~~---Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 43 LITTNKKSGLAVYSLE-GKMLHSYHT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp EEEEETTSCCEEEETT-CCEEEECCS---SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred EEEEcCcCCEEEEcCC-CcEEEeccc---CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 3444445679999986 666665543 445554432 22334556653 2 3577787642 233333332
Q ss_pred C-------CCceEEEEe--C---CC-EEEEEeCCCcEEEEECCCCC------ccEEEecCccCCEEEEEEcCCCCEEEEE
Q 011916 250 H-------QTRAGVLAW--N---SR-ILSSGSRDRNILQHDLRVSS------DYICKLAGHKSEVCGLKWSHDDRELASG 310 (475)
Q Consensus 250 h-------~~~v~~l~~--~---~~-~l~sgs~dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~s~~~~~lasg 310 (475)
. ...+..+|. + +. ++++...+|.+..|.+.... ..++.+. -..++.+|.+..+...|..+
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Lyis 197 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIA 197 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEE
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEEe
Confidence 1 123556665 3 33 56777889999998774322 2223333 34679999999988899999
Q ss_pred eCCCcEEEEECCC--C---ceeEEEec--cccceeEEEEC--CCCC-cEEEEecCCCCCeEEEEECCCC-ceeeee
Q 011916 311 GNDNQLLVWNQHS--Q---QPTLRLTE--HTAAVKAIAWS--PHQS-SLLASGGGTADRCIRFWNTSNG-HQLNSV 375 (475)
Q Consensus 311 ~~Dg~I~iwd~~~--~---~~~~~~~~--h~~~v~~l~~s--p~~~-~ll~sg~Gs~d~~I~iwd~~~~-~~~~~~ 375 (475)
-++.-|..++... . ..+....+ ..+.+..|+.- .++. +|++|.- .+++..+||..+. +.+..+
T Consensus 198 EE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQ--G~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQ--GNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp ETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEG--GGTEEEEEESSTTCCEEEEE
T ss_pred cCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcC--CCCeEEEEecCCCccccceE
Confidence 8887776666542 1 12222211 34567777754 3333 6777765 5899999998763 555444
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.18 E-value=0.32 Score=42.27 Aligned_cols=214 Identities=10% Similarity=0.048 Sum_probs=95.3
Q ss_pred eEEEEECCCCeeeE--EecCCCCceEEEEeCCCEEEEEeCC---------CcEEEEECCCCCccEEEec---CccCCEEE
Q 011916 232 QVQVWDGTQCKRVR--TFGGHQTRAGVLAWNSRILSSGSRD---------RNILQHDLRVSSDYICKLA---GHKSEVCG 297 (475)
Q Consensus 232 ~v~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~l~sgs~d---------g~I~iwd~~~~~~~~~~~~---~h~~~V~~ 297 (475)
.+.+||+++++-.. .+......-..+..++.+++.|+.. ..+.+||.... .. ..+. .-...-.+
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~-~w-~~~~~~p~~r~~~~~ 97 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN-QW-SPCAPMSVPRNRIGV 97 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT-EE-EECCCCSSCCBTCEE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccc-cc-cccccccceecceec
Confidence 58899998875433 2332222233444566777776531 35677787632 11 1111 00111112
Q ss_pred EEEcCCCCEEEEEeCCC-----cEEEEECCCCceeEEEec--cccceeEEEECCCCCcEEEEecCC---CCCeEEEEECC
Q 011916 298 LKWSHDDRELASGGNDN-----QLLVWNQHSQQPTLRLTE--HTAAVKAIAWSPHQSSLLASGGGT---ADRCIRFWNTS 367 (475)
Q Consensus 298 l~~s~~~~~lasg~~Dg-----~I~iwd~~~~~~~~~~~~--h~~~v~~l~~sp~~~~ll~sg~Gs---~d~~I~iwd~~ 367 (475)
+.+ +++.++.++.++ .+..+|..+......-.. .......+.. ...+++.|+.. ....+..||..
T Consensus 98 ~~~--~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~~~~GG~~~~~~~~~~~~~d~~ 172 (288)
T d1zgka1 98 GVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPE 172 (288)
T ss_dssp EEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred ccc--ceeeEEecceecccccceeeeeccccCccccccccccccccceeeee---eecceEecCcccccccceEEEeecc
Confidence 222 555666655433 344566665432211110 0111111222 23355555411 13457888887
Q ss_pred CCceeeeecCCCC--eeEEEEcCCCCeEEEEEecCC-----CeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEE
Q 011916 368 NGHQLNSVDTGSQ--VCNLAWSKNVNELVSTHGYSQ-----NQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTG 440 (475)
Q Consensus 368 ~~~~~~~~~~~~~--v~~l~~s~~~~~l~~~~g~~d-----g~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~ 440 (475)
+.+....-..... ....... .+ .+... |..+ ..+.++|..+.+....-.....+..+-+...++++++.|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~-~~-~i~i~-GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~G 249 (288)
T d1zgka1 173 RNEWRMITAMNTIRSGAGVCVL-HN-CIYAA-GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLG 249 (288)
T ss_dssp TTEEEECCCCSSCCBSCEEEEE-TT-EEEEE-CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEC
T ss_pred ccccccccccccccccccccce-ee-eEEEe-cCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEe
Confidence 6654332221111 1122222 23 33333 3222 356778877655433222222222111222367788877
Q ss_pred eCCCC-----EEEEecCCCC
Q 011916 441 AGDET-----LRFWNVFPSL 455 (475)
Q Consensus 441 s~Dg~-----I~iW~~~~~~ 455 (475)
+.++. |.+||+....
T Consensus 250 G~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 250 GYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp CBCSSCBCCEEEEEETTTTE
T ss_pred cCCCCeecceEEEEECCCCE
Confidence 65543 6677777644
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.12 E-value=0.89 Score=41.65 Aligned_cols=176 Identities=10% Similarity=-0.018 Sum_probs=101.9
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------CeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEEC
Q 011916 210 DSVCSVQWTREGSYISVGTNLGQVQVWDGTQ-----------CKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDL 278 (475)
Q Consensus 210 ~~V~~v~~spdg~~la~g~~dg~v~iwd~~~-----------~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~ 278 (475)
....-+++++...++++|+.++ +.|..+.. ....... .-..|..++++++.|+... ++.+..++.
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d~l~v~~-~~~l~~~~~ 112 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGDQVLVST-RNALYSLDL 112 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETTEEEEEE-SSEEEEEES
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCCEEEEEe-CCCEEEEEe
Confidence 3455778888777888888775 56665211 1111111 1236889999888777654 456778887
Q ss_pred CCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEe-----ccccceeEEEECCCCCcEEEEe
Q 011916 279 RVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLT-----EHTAAVKAIAWSPHQSSLLASG 353 (475)
Q Consensus 279 ~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~-----~h~~~v~~l~~sp~~~~ll~sg 353 (475)
..-. .......-...+..+.++|. .++....+|.+.++++..++...... .-.+.+.+++|++.+..+++..
T Consensus 113 ~~l~-~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~ 189 (381)
T d1xipa_ 113 EELS-EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR 189 (381)
T ss_dssp SSTT-CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred eccc-cccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence 6322 23333334566888888875 56667778999999999876432211 1235577788887777665532
Q ss_pred cCCCCCeEEEE-ECCCCceeee-ecCCCCeeEEEEcCCCCeEEEE
Q 011916 354 GGTADRCIRFW-NTSNGHQLNS-VDTGSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 354 ~Gs~d~~I~iw-d~~~~~~~~~-~~~~~~v~~l~~s~~~~~l~~~ 396 (475)
.+...+- ++.....+.. ......+.++.|-.+..++++.
T Consensus 190 ----g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 190 ----NGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp ----TTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred ----CCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence 1111111 1111111100 0123468889998776666553
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=94.76 E-value=1.4 Score=39.68 Aligned_cols=141 Identities=13% Similarity=0.132 Sum_probs=79.2
Q ss_pred EEEEE--cCCCC-EEEEEe---CCCcEEEEECCCCceeE----EEec-cccceeEEEECCCCCcEEEEec----------
Q 011916 296 CGLKW--SHDDR-ELASGG---NDNQLLVWNQHSQQPTL----RLTE-HTAAVKAIAWSPHQSSLLASGG---------- 354 (475)
Q Consensus 296 ~~l~~--s~~~~-~lasg~---~Dg~I~iwd~~~~~~~~----~~~~-h~~~v~~l~~sp~~~~ll~sg~---------- 354 (475)
.+|.. ..+|. +|++.. ...+|.+|++....... .+.. .....++|++..++. ++++-.
T Consensus 100 hGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~ 178 (340)
T d1v04a_ 100 HGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKS 178 (340)
T ss_dssp EEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHH
T ss_pred cceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhh
Confidence 44444 34555 444443 34578888875433211 1211 224468888888887 555521
Q ss_pred -----CCCCCeEEEEECCCCceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEe--cCCCcceEE
Q 011916 355 -----GTADRCIRFWNTSNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTL--TGHSLRVLY 427 (475)
Q Consensus 355 -----Gs~d~~I~iwd~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l--~~h~~~V~~ 427 (475)
+..-+.+..|| .++.......-.....++++|++++|+++ ....+.|++|++.....+... ..-....-.
T Consensus 179 ~e~~~~~~~g~v~~~~--~~~~~~~~~~l~~pNGI~~s~d~~~lyVa-~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDN 255 (340)
T d1v04a_ 179 WEMHLGLAWSFVTYYS--PNDVRVVAEGFDFANGINISPDGKYVYIA-ELLAHKIHVYEKHANWTLTPLRVLSFDTLVDN 255 (340)
T ss_dssp HHHHTTCCCEEEEEEC--SSCEEEEEEEESSEEEEEECTTSSEEEEE-EGGGTEEEEEEECTTSCEEEEEEEECSSEEEE
T ss_pred hhHhhcCCceeEEEEc--CCceEEEcCCCCccceeEECCCCCEEEEE-eCCCCeEEEEEeCCCcccceEEEecCCCCCCc
Confidence 00123344444 44433333444668899999999999886 557788999998654322211 112344667
Q ss_pred EEECC-CCCEEEEE
Q 011916 428 LATSP-DGQTIVTG 440 (475)
Q Consensus 428 l~~sp-dg~~l~s~ 440 (475)
+.+.+ +|.+.+.+
T Consensus 256 i~~d~~~g~lwva~ 269 (340)
T d1v04a_ 256 ISVDPVTGDLWVGC 269 (340)
T ss_dssp EEECTTTCCEEEEE
T ss_pred cEEecCCCEEEEEE
Confidence 78865 45555444
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=93.81 E-value=1.1 Score=38.83 Aligned_cols=223 Identities=13% Similarity=0.074 Sum_probs=109.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCCCCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEe
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGHQTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKL 288 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~ 288 (475)
...|..|+-- ..+.++-. ||.|..|-.....++..-......|..++-.....+.- .|+.+..|.....+.....
T Consensus 25 ~~~i~~va~G--~~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al-~dg~v~~wG~~~~gq~~~~- 99 (273)
T d1jtdb_ 25 QSGVDAIAGG--YFHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVP- 99 (273)
T ss_dssp SSSEEEEEEC--SSEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEE-ETTEEEEEECCTTSTTCCC-
T ss_pred CCCcEEEEcc--CCEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCCceeee-eeeeeeccCCCcceeeccc-
Confidence 4567777652 23333334 89999997655433322222334566666543333333 4899999986533322111
Q ss_pred cCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC
Q 011916 289 AGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN 368 (475)
Q Consensus 289 ~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~ 368 (475)
......+..++.... ..+. -.|+.+..|.................|..++-.. ..+++. .++.++.|-...
T Consensus 100 ~~~~~~~~~i~~~~~--~~~~-~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~----~~g~~~~~G~~~ 170 (273)
T d1jtdb_ 100 AEARSGVDAIAAGAW--ASYA-LKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGV--YTALAV----KNGGVIAWGDNY 170 (273)
T ss_dssp GGGGSSCCEEEEETT--EEEE-EETTEEEEEECCTTSTTSCCGGGGSSEEEEEECS--SEEEEE----ETTEEEEEECCT
T ss_pred cccccceeEEeeecc--cccc-cccccceecccCCCCceeeeccCCceEEEEeccc--eeeeee----cccceeEeeccc
Confidence 111223444443222 2222 2478899987553322211112223444444322 223332 478888887543
Q ss_pred C-ceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEECCCCceEEEecCCCcceEEEEECCCCCEEEEEeCCCCEE
Q 011916 369 G-HQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSMAKVSTLTGHSLRVLYLATSPDGQTIVTGAGDETLR 447 (475)
Q Consensus 369 ~-~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s~s~Dg~I~ 447 (475)
. +..........|..++... ...++. .||.|+-|=.....++..-......|..|+-...- .++. . ||.|.
T Consensus 171 ~g~~~~~~~~~~~v~~Is~G~--~h~~~l---~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~~-~~~l-~-~g~v~ 242 (273)
T d1jtdb_ 171 FGQTTVPAEAQSGVDDVAGGI--FHSLAL---KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLAL-K-NGKVI 242 (273)
T ss_dssp TSTTSCCGGGSSSEEEEEECS--SEEEEE---ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEE-E-TTEEE
T ss_pred CCcccccccccCCccceeccc--eeeEEE---ecCcEEEcCCCCCCccCCCccCCCCcEEEEeCcce-EEEE-E-CCEEE
Confidence 2 2222223445666665432 232322 37889999653322221111223456777755333 3443 3 89999
Q ss_pred EEecCC
Q 011916 448 FWNVFP 453 (475)
Q Consensus 448 iW~~~~ 453 (475)
.|--..
T Consensus 243 ~WG~~~ 248 (273)
T d1jtdb_ 243 AWGSSR 248 (273)
T ss_dssp EESTTC
T ss_pred EECCCC
Confidence 996543
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=1.9 Score=36.85 Aligned_cols=215 Identities=13% Similarity=0.100 Sum_probs=100.3
Q ss_pred CeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeC---------CCeEEEEECCCCeeeEE--ecCCCCceEE
Q 011916 188 TCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTN---------LGQVQVWDGTQCKRVRT--FGGHQTRAGV 256 (475)
Q Consensus 188 ~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~---------dg~v~iwd~~~~~~~~~--~~~h~~~v~~ 256 (475)
..|.+||..+++..++-.+.....=.++... +++.++.|+. -..+.+||..+.+.... +......-.+
T Consensus 19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~ 97 (288)
T d1zgka1 19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGV 97 (288)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEE
T ss_pred ceEEEEECCCCeEEECCCCCCccceeEEEEE-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceec
Confidence 3688999999988777554322111122222 5666666653 13577888876654432 2211222334
Q ss_pred EEeCCCEEEEEeCCCcE-----EEEECCCCCccEEEecCc---cCCEEEEEEcCCCCEEEEEeCC-----CcEEEEECCC
Q 011916 257 LAWNSRILSSGSRDRNI-----LQHDLRVSSDYICKLAGH---KSEVCGLKWSHDDRELASGGND-----NQLLVWNQHS 323 (475)
Q Consensus 257 l~~~~~~l~sgs~dg~I-----~iwd~~~~~~~~~~~~~h---~~~V~~l~~s~~~~~lasg~~D-----g~I~iwd~~~ 323 (475)
...++.+++.++.++.. ..+|.... . ....... ......+.. ++..++.|+.+ ..+..||..+
T Consensus 98 ~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~r~~~~~~~~--~~~~~~~GG~~~~~~~~~~~~~d~~~ 173 (288)
T d1zgka1 98 GVIDGHIYAVGGSHGCIHHNSVERYEPERD-E-WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPER 173 (288)
T ss_dssp EEETTEEEEECCEETTEECCCEEEEETTTT-E-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred cccceeeEEecceecccccceeeeeccccC-c-cccccccccccccceeeee--eecceEecCcccccccceEEEeeccc
Confidence 45577777766554443 34555422 1 1111111 111112222 34455555543 4578888876
Q ss_pred CceeEEEecc--ccceeEEEECCCCCcEEEEecCCC---CCeEEEEECCCCceeeeecC--CCCeeEEEEcCCCCeEEEE
Q 011916 324 QQPTLRLTEH--TAAVKAIAWSPHQSSLLASGGGTA---DRCIRFWNTSNGHQLNSVDT--GSQVCNLAWSKNVNELVST 396 (475)
Q Consensus 324 ~~~~~~~~~h--~~~v~~l~~sp~~~~ll~sg~Gs~---d~~I~iwd~~~~~~~~~~~~--~~~v~~l~~s~~~~~l~~~ 396 (475)
.+... .... .....++... +..+++.|+... -..+..+|..+.+....-.. ...-..++.. +++.++.
T Consensus 174 ~~~~~-~~~~~~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~-~~~l~v~- 248 (288)
T d1zgka1 174 NEWRM-ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH-QGRIYVL- 248 (288)
T ss_dssp TEEEE-CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEE-
T ss_pred ccccc-ccccccccccccccce--eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEE-CCEEEEE-
Confidence 54321 1111 1111122222 233666654221 23567788776554332221 1111222222 4555444
Q ss_pred EecCC-----CeEEEEECCCCc
Q 011916 397 HGYSQ-----NQIMVWKYPSMA 413 (475)
Q Consensus 397 ~g~~d-----g~I~iwd~~~~~ 413 (475)
|..+ ..|.+||+.+.+
T Consensus 249 -GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 249 -GGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp -CCBCSSCBCCEEEEEETTTTE
T ss_pred -ecCCCCeecceEEEEECCCCE
Confidence 4333 247889987653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.93 E-value=3 Score=37.29 Aligned_cols=163 Identities=10% Similarity=0.028 Sum_probs=94.2
Q ss_pred CCeEEEEECCCCeee-EEe--cCCC-----CceEEEEe----CCC-EEEEEe---CCCcEEEEECCCCCccEE---Eec-
Q 011916 230 LGQVQVWDGTQCKRV-RTF--GGHQ-----TRAGVLAW----NSR-ILSSGS---RDRNILQHDLRVSSDYIC---KLA- 289 (475)
Q Consensus 230 dg~v~iwd~~~~~~~-~~~--~~h~-----~~v~~l~~----~~~-~l~sgs---~dg~I~iwd~~~~~~~~~---~~~- 289 (475)
.|.|.++|+.+.+.. ..+ .+.. -.-..+.. ++. +|++.. ...+|-++++........ .+.
T Consensus 67 ~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~ 146 (340)
T d1v04a_ 67 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH 146 (340)
T ss_dssp CCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred CCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence 488899998764322 121 1110 12233332 333 444443 456788888764443221 111
Q ss_pred CccCCEEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCceeEEEeccccceeEEEECCCCCcEEEEec
Q 011916 290 GHKSEVCGLKWSHDDRELASGGN---------------DNQLLVWNQHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGG 354 (475)
Q Consensus 290 ~h~~~V~~l~~s~~~~~lasg~~---------------Dg~I~iwd~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~ 354 (475)
........+.+..++.+++|-.. -+...+|....++. ......-...+.|+++|++++|+++..
T Consensus 147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~~lyVa~t 225 (340)
T d1v04a_ 147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGKYVYIAEL 225 (340)
T ss_dssp TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE-EEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce-EEEcCCCCccceeEECCCCCEEEEEeC
Confidence 12245788888888988887311 12334444444333 233333456799999999999988875
Q ss_pred CCCCCeEEEEECCCCcee---eeecCCCCeeEEEEcCC-CCeEEE
Q 011916 355 GTADRCIRFWNTSNGHQL---NSVDTGSQVCNLAWSKN-VNELVS 395 (475)
Q Consensus 355 Gs~d~~I~iwd~~~~~~~---~~~~~~~~v~~l~~s~~-~~~l~~ 395 (475)
..+.|+.|++.....+ ..+......-++.+.+. |...++
T Consensus 226 --~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva 268 (340)
T d1v04a_ 226 --LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG 268 (340)
T ss_dssp --GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred --CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence 7899999998754322 33356677888999764 444444
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=92.85 E-value=3.8 Score=38.19 Aligned_cols=53 Identities=8% Similarity=0.030 Sum_probs=36.8
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEE--ec------CCCCceEEEEeCC
Q 011916 209 GDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRT--FG------GHQTRAGVLAWNS 261 (475)
Q Consensus 209 ~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~--~~------~h~~~v~~l~~~~ 261 (475)
-...++|+|.|||++|++--..|.|++++..+++.... +. .-......+++++
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~P 86 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHP 86 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCC
Confidence 35677999999999887765679999999777654332 21 1234567788853
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=90.44 E-value=4.7 Score=34.42 Aligned_cols=218 Identities=14% Similarity=0.128 Sum_probs=103.3
Q ss_pred eeEEecCCCCEEEEEcCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeeeEEecCC
Q 011916 171 LNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREGSYISVGTNLGQVQVWDGTQCKRVRTFGGH 250 (475)
Q Consensus 171 v~~l~ws~~~~la~~~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg~~la~g~~dg~v~iwd~~~~~~~~~~~~h 250 (475)
+..++-.....++.. ++.|+.|-....-....-. .....|..|+-- ..+.+ +..||.+..|.....-........
T Consensus 28 i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~-~~~~~v~~v~~G--~~~~~-al~dg~v~~wG~~~~gq~~~~~~~ 102 (273)
T d1jtdb_ 28 VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPA-ATQSGVDAIAAG--NYHSL-ALKDGEVIAWGGNEDGQTTVPAEA 102 (273)
T ss_dssp EEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCG-GGGSCCCEEEEC--SSEEE-EEETTEEEEEECCTTSTTCCCGGG
T ss_pred cEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeee-cccccceEEecC--CCcee-eeeeeeeeccCCCcceeecccccc
Confidence 444554444556655 8999999766542111111 112344454431 22222 234899999985432221111111
Q ss_pred CCceEEEEeCCCEEEEEeCCCcEEEEECCCCCccEEEecCccCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE
Q 011916 251 QTRAGVLAWNSRILSSGSRDRNILQHDLRVSSDYICKLAGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL 330 (475)
Q Consensus 251 ~~~v~~l~~~~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~ 330 (475)
...+..++-.....+.. .|+.+..|.......... .......|..+.-. ...++ ...++.++.|-..........
T Consensus 103 ~~~~~~i~~~~~~~~~~-~dg~v~~~g~~~~~~~~~-~~~~~~~v~~~~~~--~~~~~-~~~~g~~~~~G~~~~g~~~~~ 177 (273)
T d1jtdb_ 103 RSGVDAIAAGAWASYAL-KDGKVIAWGDDSDGQTTV-PAEAQSGVTALDGG--VYTAL-AVKNGGVIAWGDNYFGQTTVP 177 (273)
T ss_dssp GSSCCEEEEETTEEEEE-ETTEEEEEECCTTSTTSC-CGGGGSSEEEEEEC--SSEEE-EEETTEEEEEECCTTSTTSCC
T ss_pred ccceeEEeeeccccccc-ccccceecccCCCCceee-eccCCceEEEEecc--ceeee-eecccceeEeecccCCccccc
Confidence 22344444444333333 488899887543222111 11122345544432 22333 234678888876543322222
Q ss_pred eccccceeEEEECCCCCcEEEEecCCCCCeEEEEECCC-CceeeeecCCCCeeEEEEcCCCCeEEEEEecCCCeEEEEEC
Q 011916 331 TEHTAAVKAIAWSPHQSSLLASGGGTADRCIRFWNTSN-GHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKY 409 (475)
Q Consensus 331 ~~h~~~v~~l~~sp~~~~ll~sg~Gs~d~~I~iwd~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~~g~~dg~I~iwd~ 409 (475)
......|..|+..... .++. .||.|+.|=... ++.-........|..++-... +.++. .||.|+.|-.
T Consensus 178 ~~~~~~v~~Is~G~~h--~~~l----~dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~~--~~~~l---~~g~v~~WG~ 246 (273)
T d1jtdb_ 178 AEAQSGVDDVAGGIFH--SLAL----KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEW--YSLAL---KNGKVIAWGS 246 (273)
T ss_dssp GGGSSSEEEEEECSSE--EEEE----ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSS--CEEEE---ETTEEEEEST
T ss_pred ccccCCccceecccee--eEEE----ecCcEEEcCCCCCCccCCCccCCCCcEEEEeCcc--eEEEE---ECCEEEEECC
Confidence 2244567777664332 2332 378888885432 222111222234555553322 22221 3789999954
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=83.92 E-value=10 Score=34.94 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=39.0
Q ss_pred cCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeEEE--e------ccccceeEEEECCC
Q 011916 292 KSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQQPTLRL--T------EHTAAVKAIAWSPH 345 (475)
Q Consensus 292 ~~~V~~l~~s~~~~~lasg~~Dg~I~iwd~~~~~~~~~~--~------~h~~~v~~l~~sp~ 345 (475)
-....+|+|.|||++|++--..|.|++++..++...... . .-+.....|+++|+
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 456789999999998887755799999998776543221 1 12345678999986
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.66 E-value=12 Score=30.64 Aligned_cols=225 Identities=13% Similarity=0.135 Sum_probs=120.1
Q ss_pred CCCEEEEE-cCCeEEEEECCCCcEEEEeeCCCCCcEEEEEEcCCC--CEEEEEe------CCCeEEEEECCCCeeeEEec
Q 011916 178 SQNVLAVG-LGTCVYLWTASNSKVTRLCDLGPGDSVCSVQWTREG--SYISVGT------NLGQVQVWDGTQCKRVRTFG 248 (475)
Q Consensus 178 ~~~~la~~-~~~~V~lw~~~~~~~~~~~~~~~~~~V~~v~~spdg--~~la~g~------~dg~v~iwd~~~~~~~~~~~ 248 (475)
.++++..+ ..|.|.++-+..++.+++.. .+|.... .|.. .++...- ....|.+-++........+.
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk----ePI~~~~-~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~ 99 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR----EPINSVL-DPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLE 99 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCS----SCCSEEC-EECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECT
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEec----ccccCcC-CCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEec
Confidence 34455555 78999999999998887753 2332221 1211 1222211 11224444443222222333
Q ss_pred CCC-CceEEEEeCC-CEEEEEeCCCcEEEEECCCCCcc--EEEecCccCCEEEEEEcCCCCEEEE----EeCCCcEEEEE
Q 011916 249 GHQ-TRAGVLAWNS-RILSSGSRDRNILQHDLRVSSDY--ICKLAGHKSEVCGLKWSHDDRELAS----GGNDNQLLVWN 320 (475)
Q Consensus 249 ~h~-~~v~~l~~~~-~~l~sgs~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~s~~~~~las----g~~Dg~I~iwd 320 (475)
... -+|.+++.++ +..++|+......+|-++ .++. +..+.+. +.|+.+. +++++- ++.-....+=|
T Consensus 100 spk~vRI~S~~yddk~vvF~Gased~~~LYvie-gGklrkL~~vPpF-sFVtDI~----~d~I~G~g~~~g~~~sfF~ad 173 (313)
T d2hu7a1 100 AVKPMRILSGVDTGEAVVFTGATEDRVALYALD-GGGLRELARLPGF-GFVSDIR----GDLIAGLGFFGGGRVSLFTSN 173 (313)
T ss_dssp TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE-TTEEEEEEEESSC-EEEEEEE----TTEEEEEEEEETTEEEEEEEE
T ss_pred CCceEEEEEeeecCceEEEecccCCceEEEEEe-CCceeeeccCCCc-ceEEecc----CCeEEEEeeecCCcceEEEEe
Confidence 333 6788888865 788889888888888887 3332 2222221 2233332 334332 12222344555
Q ss_pred CCCCceeEEEeccccceeEEEECCCCCcEEEEecCC-CCCeEEEEECCCCceeeee-c-------CCCCeeEEEEcCCCC
Q 011916 321 QHSQQPTLRLTEHTAAVKAIAWSPHQSSLLASGGGT-ADRCIRFWNTSNGHQLNSV-D-------TGSQVCNLAWSKNVN 391 (475)
Q Consensus 321 ~~~~~~~~~~~~h~~~v~~l~~sp~~~~ll~sg~Gs-~d~~I~iwd~~~~~~~~~~-~-------~~~~v~~l~~s~~~~ 391 (475)
+.++. +..+...++.++.....+..+ + +++--+ ......-+|+++++.-..- . ..-.|.-+-+.|+++
T Consensus 174 l~SG~-lri~tpkeGS~~~ay~~~gnK-V-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~ 250 (313)
T d2hu7a1 174 LSSGG-LRVFDSGEGSFSSASISPGMK-V-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGR 250 (313)
T ss_dssp TTTEE-EEEECCSSEEEEEEEECTTSC-E-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSC
T ss_pred cccCC-EEEecCCCCcccceeEccCce-e-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCc
Confidence 54443 345555667777777777776 3 332100 1222335588766543321 1 122355566899999
Q ss_pred eEEEEEecCCCeEEEEECCCCceEEEecC
Q 011916 392 ELVSTHGYSQNQIMVWKYPSMAKVSTLTG 420 (475)
Q Consensus 392 ~l~~~~g~~dg~I~iwd~~~~~~~~~l~~ 420 (475)
.+++ +-.||.-.+|. +++.+...++
T Consensus 251 L~ii--akrdG~s~lF~--nGk~in~p~G 275 (313)
T d2hu7a1 251 LAVV--ARREGRSAVFI--DGERVEAPQG 275 (313)
T ss_dssp EEEE--EEETTEEEEEE--TTEEECCCSS
T ss_pred EEEE--EecCCchheee--cceEecCCCC
Confidence 9777 66899888887 4555544443
|