Citrus Sinensis ID: 011922

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-----
MWILLKAFVLFIWLPCSSNNGASANDNNLSHSYTVSVTSLLPPTVCNRTRTALPQGLGKASLDVVSKHGPCSTLNQGKSPSLEETLRRDQQRLYSKYSGRLQKAVPDNLKKTKAFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPVSIITKTKISYFSYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS
ccHHHHHHHHHHHHccccccccccccccccEEEEEEEccccccccccccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEEEEEEEcccccccccccccEEEEcccccccccccccEEEEccccccccHHcccccEEEEEccccccccEEEEEccccccccccEEEEccccccccccEEEEEEEEEEEccEEEcccccccccccEEEEcccccEEccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccEEEEccccEEEEEcccEEEEEEEEccccccEEEEEEEEEEEEEEEEEccccEEEEEccccc
cHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHcHcccccccccccccccccccccccccEEEEEEEEccccccEEEEEEcccccEEEEcccccHHHccccccccccccccccccccccHHHHHcccccccccccccccEEEEEEEccccccEEEEEEEEEEEcccccccccccccEEEEccccccccccccccEEEccccccccHHHccccEEEEEEccccccccEEEEcccccccccccEEEEEEEccccccEEEEEEEEEEEccEEEEccHHHcccccEEEEcccEEEcccHHHHHHHHHHHHHHHHccccccccccccccEEEcccccEEEccEEEEEEEccEEEEcccccEEEEccccEEEEEEEcccccccEEEEEEEEEccEEEEEEccccEEEEcccccc
MWILLKAFVLFIWlpcssnngasandnnlshsytvsvtsllpptvcnrtrtalpqglgkasldvvskhgpcstlnqgkspsleETLRRDQQRLYSKYSGrlqkavpdnlkktkaftfpakiesvsadeyYTVVAIGKPKQYVSLLLDtgsdvtwtqckpcihcfqqrdplfdpsksktfskipcnsttckklrglfpsddncnsrechfniayvdgsgnsgfwatDRMTIQEANIKGYFTRYPFLLGCirnssgdksgasgimgldrspvsiiTKTKISyfsyclpspygsrgyitfgkrntvktkfikytpiittpeqseyyditltgisvggkklpfstSYFTKLSteidsgavitrlpspMYAALRSAFRKRMKKYKRakgagdildtcydlrAYETVVVPKITIHflggvdlelDVRGTLVVASVSQVCLGFavypsdtnsfllgnvqqrghevhydvagrrlgfgpgncs
MWILLKAFVLFIWLPCSSNNGASANDNNLSHSYTVSVTSLLPPTVCNRTRTALPQGLGKASLDVVSKHGpcstlnqgkspsleetLRRDQQRLYSKysgrlqkavpdnlkktkaftfpakiesvsadEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFdpsksktfskipcnsttckkLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPVSIITKTKISYFSYCLPSPYGSRGYITFGKRNTVKTkfikytpiittpeqseyYDITLTgisvggkkLPFSTSYFTKLSTeidsgavitrlpspMYAALRSAFRKRMKKYkrakgagdildtCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAgrrlgfgpgncs
MWILLKAFVLFIWLPCssnngasandnnlsHSYTVSVTSLLPPTVCNRTRTALPQGLGKASLDVVSKHGPCSTLNQGKSPSLEETLRRDQQRLYSKYSGRLQKAVPDNLKKTKAFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPVSIITKTKISYFSYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS
*WILLKAFVLFIWLPCSS************HSYTVSVTSLLPPTVCNRTRTAL********************************************************KKTKAFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFD*****TFSKIPCNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRN**********IMGLDRSPVSIITKTKISYFSYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGF******
MWILLKAFVLFIWLPCSSNNG******N**HSYTVSVTSLLP************************K**********************QQR*****************************ESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFD***SK**SKIPCNSTTCKKLRG*******CNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPVSIITKTKISYFSYCLPSPY*SR*Y*************IKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKR**********GDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS
MWILLKAFVLFIWLPCSSNNGASANDNNLSHSYTVSVTSLLPPTVCNRTRTALPQGLGKASLDVVSKHGPCSTLNQGKSPSLEETLRRDQQRLYSKYSGRLQKAVPDNLKKTKAFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPVSIITKTKISYFSYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRK********KGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS
MWILLKAFVLFIWLPCSSNNGASANDNNLSHSYTVSVTSLLPP**C************KASLDVVSKHGPCSTLNQGKSPSLEETLRRDQQRLYSKYSGRLQK****************KIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPVSIITKTKISYFSYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MWILLKAFVLFIWLPCSSNNGASANDNNLSHSYTVSVTSLLPPTVCNRTRTALPQGLGKASLDVVSKHGPCSTLNQGKSPSLEETLRRDQQRLYSKYSGRLQKAVPDNLKKTKAFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPVSIITKTKISYFSYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query475 2.2.26 [Sep-21-2011]
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.698 0.664 0.329 1e-44
Q766C2438 Aspartic proteinase nepen N/A no 0.696 0.755 0.333 1e-44
Q766C3437 Aspartic proteinase nepen N/A no 0.762 0.828 0.302 2e-42
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.793 0.802 0.298 3e-42
Q6XBF8437 Aspartic proteinase CDR1 no no 0.774 0.842 0.325 6e-39
Q3EBM5447 Probable aspartic proteas no no 0.722 0.767 0.317 3e-32
Q9LZL3453 Aspartic proteinase PCS1 no no 0.684 0.717 0.268 6e-29
Q9S9K4475 Aspartic proteinase-like no no 0.707 0.707 0.253 3e-22
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.686 0.795 0.234 8e-13
Q0IU52410 Aspartic proteinase Asp1 no no 0.675 0.782 0.231 2e-09
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function desciption
 Score =  181 bits (459), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 184/355 (51%), Gaps = 23/355 (6%)

Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNST 187
           EY++ + +G P + + L+LDTGSDV W QC+PC  C+QQ DP+F+P+ S T+  + C++ 
Sbjct: 161 EYFSRIGVGTPAKEMYLVLDTGSDVNWIQCEPCADCYQQSDPVFNPTSSSTYKSLTCSAP 220

Query: 188 TCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLG 247
            C  L         C S +C + ++Y DGS   G  ATD +T   +   G        LG
Sbjct: 221 QCSLLE-----TSACRSNKCLYQVSYGDGSFTVGELATDTVTFGNS---GKINNVA--LG 270

Query: 248 CIRNSSGDKSGASGIMGLDRSPVSIITKTKISYFSYCL-PSPYGSRGYITFGKRNTVKTK 306
           C  ++ G  +GA+G++GL    +SI  + K + FSYCL     G    + F   N+V+  
Sbjct: 271 CGHDNEGLFTGAAGLLGLGGGVLSITNQMKATSFSYCLVDRDSGKSSSLDF---NSVQLG 327

Query: 307 FIKYT-PIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTE-----IDSGAVITRL 360
               T P++   +   +Y + L+G SVGG+K+    + F   ++      +D G  +TRL
Sbjct: 328 GGDATAPLLRNKKIDTFYYVGLSGFSVGGEKVVLPDAIFDVDASGSGGVILDCGTAVTRL 387

Query: 361 PSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDV 420
            +  Y +LR AF K     K+   +  + DTCYD  +  TV VP +  HF GG  L+L  
Sbjct: 388 QTQAYNSLRDAFLKLTVNLKKGSSSISLFDTCYDFSSLSTVKVPTVAFHFTGGKSLDLPA 447

Query: 421 RGTLV-VASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
           +  L+ V      C  FA  P+ ++  ++GNVQQ+G  + YD++   +G     C
Sbjct: 448 KNYLIPVDDSGTFCFAFA--PTSSSLSIIGNVQQQGTRITYDLSKNVIGLSGNKC 500
Aspartic protease involved in drought avoidance through abscisic acid signaling.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
225430555481 PREDICTED: aspartic proteinase nepenthes 0.905 0.893 0.421 2e-90
225430551490 PREDICTED: aspartic proteinase nepenthes 0.907 0.879 0.413 1e-87
24430421502 41 kD chloroplast nucleoid DNA binding p 0.966 0.914 0.389 4e-87
22326716474 aspartyl protease family protein [Arabid 0.858 0.860 0.407 7e-86
297811185475 hypothetical protein ARALYDRAFT_325615 [ 0.962 0.962 0.385 9e-86
8979711446 nucleoid DNA-binding protein cnd41-like 0.865 0.921 0.408 9e-86
356527089488 PREDICTED: aspartic proteinase nepenthes 0.827 0.805 0.441 5e-85
356524287481 PREDICTED: aspartic proteinase nepenthes 0.930 0.918 0.416 9e-85
356527091482 PREDICTED: aspartic proteinase nepenthes 0.922 0.908 0.415 2e-84
356567196490 PREDICTED: aspartic proteinase nepenthes 0.829 0.804 0.434 4e-83
>gi|225430555|ref|XP_002285593.1| PREDICTED: aspartic proteinase nepenthesin-2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 190/451 (42%), Positives = 281/451 (62%), Gaps = 21/451 (4%)

Query: 33  YTVSVTSLLPPTVCNRTRTALPQGLGK-ASLDVVSKHGPCSTLNQ--GKSPSLEETLRRD 89
           + V +TSL+P +VC+ +    P+G  K ASL+V+ KHGPCS L+Q  G+SPS  + L +D
Sbjct: 42  HNVHITSLMPSSVCSPS----PKGDDKRASLEVIHKHGPCSKLSQDKGRSPSRTQMLDQD 97

Query: 90  QQRLYSKYSGRLQKAVPDNLK-KTKAFTFPAKIES-VSADEYYTVVAIGKPKQYVSLLLD 147
           + R+ S  S RL K   D  K K    T P+K  S +    Y   V +G PK+ ++ + D
Sbjct: 98  ESRVNSIRS-RLAKNPADGGKLKGSKVTLPSKSGSTIGTGNYVVTVGLGTPKRDLTFIFD 156

Query: 148 TGSDVTWTQCKPCI-HCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRE 206
           TGSD+TWTQC+PC  +C+ Q++P+F+PSKS +++ I C+S TC +L+    +  +C++  
Sbjct: 157 TGSDLTWTQCEPCARYCYHQQEPIFNPSKSTSYTNISCSSPTCDELKSGTGNSPSCSAST 216

Query: 207 CHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLD 266
           C + I Y D S + GF+A D++ +   ++   F    FL GC +N+ G   G +G++GL 
Sbjct: 217 CVYGIQYGDQSYSVGFFAQDKLALTSTDV---FNN--FLFGCGQNNRGLFVGVAGLIGLG 271

Query: 267 RSPVSIITKTKISY---FSYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYY 323
           R+ +S++++T   Y   FSYCLPS   S GY+TFG      +K +K+TP +   +   +Y
Sbjct: 272 RNALSLVSQTAQKYGKLFSYCLPSTSSSTGYLTFGSGGGT-SKAVKFTPSLVNSQGPSFY 330

Query: 324 DITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAK 383
            + L  ISVGG+KL  S S F+   T IDSG VI+RLP   Y+ LR++F+++M KY +A 
Sbjct: 331 FLNLIAISVGGRKLSTSASVFSTAGTIIDSGTVISRLPPTAYSDLRASFQQQMSKYPKAA 390

Query: 384 GAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDT 443
            A  ILDTCYD   Y+TV VPKI ++F  G +++LD  G   + ++SQVCL FA     T
Sbjct: 391 PA-SILDTCYDFSQYDTVDVPKINLYFSDGAEMDLDPSGIFYILNISQVCLAFAGNSDAT 449

Query: 444 NSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
           +  +LGNVQQ+  +V YDVAG R+GF PG C
Sbjct: 450 DIAILGNVQQKTFDVVYDVAGGRIGFAPGGC 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225430551|ref|XP_002283470.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|24430421|dbj|BAC22609.1| 41 kD chloroplast nucleoid DNA binding protein (CND41) [Nicotiana sylvestris] Back     alignment and taxonomy information
>gi|22326716|ref|NP_196638.2| aspartyl protease family protein [Arabidopsis thaliana] gi|18700103|gb|AAL77663.1| AT5g10770/T30N20_40 [Arabidopsis thaliana] gi|24111269|gb|AAN46758.1| At5g10770/T30N20_40 [Arabidopsis thaliana] gi|332004211|gb|AED91594.1| aspartyl protease family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297811185|ref|XP_002873476.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] gi|297319313|gb|EFH49735.1| hypothetical protein ARALYDRAFT_325615 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|8979711|emb|CAB96832.1| nucleoid DNA-binding protein cnd41-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356527089|ref|XP_003532146.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356524287|ref|XP_003530761.1| PREDICTED: aspartic proteinase nepenthesin-1-like [Glycine max] Back     alignment and taxonomy information
>gi|356527091|ref|XP_003532147.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|356567196|ref|XP_003551807.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query475
TAIR|locus:2183730474 AT5G10770 "AT5G10770" [Arabido 0.913 0.915 0.402 5.4e-86
TAIR|locus:2183715464 AT5G10760 [Arabidopsis thalian 0.882 0.903 0.382 1.1e-73
TAIR|locus:2017799484 AT1G79720 [Arabidopsis thalian 0.846 0.830 0.347 8.1e-60
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.806 0.789 0.349 7.3e-59
TAIR|locus:2076745483 AT3G61820 [Arabidopsis thalian 0.696 0.685 0.379 3.7e-55
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.884 0.893 0.292 2.2e-50
TAIR|locus:2031225483 AT1G25510 [Arabidopsis thalian 0.694 0.683 0.344 5.8e-50
TAIR|locus:2095042500 ASPG1 "ASPARTIC PROTEASE IN GU 0.743 0.706 0.328 7.4e-50
TAIR|locus:2024306449 AT1G09750 [Arabidopsis thalian 0.88 0.930 0.311 1.3e-45
TAIR|locus:2145954437 CDR1 "CONSTITUTIVE DISEASE RES 0.772 0.839 0.337 1.6e-45
TAIR|locus:2183730 AT5G10770 "AT5G10770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 182/452 (40%), Positives = 269/452 (59%)

Query:    32 SYTVSVTSLLPPTVCNRTRTALPQG-LGKASLDVVSKHGPCSTLNQGK--SPSLEETLRR 88
             S+T+ V+SLLP +  + +    P+    K+SL V  +HG CS LN GK  SP   E LR 
Sbjct:    33 SHTIQVSSLLPSS--SSSCVLSPRASTTKSSLHVTHRHGTCSRLNNGKATSPDHVEILRL 90

Query:    89 DQQRLYSKYSGRLQKAVPDNLKKTKAFTFPAKIES-VSADEYYTVVAIGKPKQYVSLLLD 147
             DQ R+ S +S   +K   D++ ++K+   PAK  S + +  Y   V +G PK  +SL+ D
Sbjct:    91 DQARVNSIHSKLSKKLATDHVSESKSTDLPAKDGSTLGSGNYIVTVGLGTPKNDLSLIFD 150

Query:   148 TGSDVTWTQCKPCIH-CFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRE 206
             TGSD+TWTQC+PC+  C+ Q++P+F+PSKS ++  + C+S  C  L     +  +C++  
Sbjct:   151 TGSDLTWTQCQPCVRTCYDQKEPIFNPSKSTSYYNVSCSSAACGSLSSATGNAGSCSASN 210

Query:   207 CHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLD 266
             C + I Y D S + GF A ++ T+  +++   F    F  GC  N+ G  +G +G++GL 
Sbjct:   211 CIYGIQYGDQSFSVGFLAKEKFTLTNSDV---FDGVYF--GCGENNQGLFTGVAGLLGLG 265

Query:   267 RSPVSIITKTKISY---FSYCLPSPYGSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYY 323
             R  +S  ++T  +Y   FSYCLPS     G++TFG     ++  +K+TPI T  + + +Y
Sbjct:   266 RDKLSFPSQTATAYNKIFSYCLPSSASYTGHLTFGSAGISRS--VKFTPISTITDGTSFY 323

Query:   324 DITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKRMKKYKRAK 383
              + +  I+VGG+KLP  ++ F+     IDSG VITRLP   YAALRS+F+ +M KY    
Sbjct:   324 GLNIVAITVGGQKLPIPSTVFSTPGALIDSGTVITRLPPKAYAALRSSFKAKMSKYPTTS 383

Query:   384 GAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPSDT 443
             G   ILDTC+DL  ++TV +PK+   F GG  +EL  +G   V  +SQVCL FA    D+
Sbjct:   384 GVS-ILDTCFDLSGFKTVTIPKVAFSFSGGAVVELGSKGIFYVFKISQVCLAFAGNSDDS 442

Query:   444 NSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475
             N+ + GNVQQ+  EV YD AG R+GF P  CS
Sbjct:   443 NAAIFGNVQQQTLEVVYDGAGGRVGFAPNGCS 474
GO:0003677 "DNA binding" evidence=ISS
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA
TAIR|locus:2183715 AT5G10760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2017799 AT1G79720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031225 AT1G25510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024306 AT1G09750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691
3rd Layer3.4.23.12LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00032824001
SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (481 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 2e-94
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 2e-61
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 6e-58
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 9e-45
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 2e-28
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 1e-26
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 2e-20
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 3e-19
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 1e-15
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 6e-11
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 2e-09
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 1e-06
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 2e-05
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 3e-05
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 7e-05
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 1e-04
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 3e-04
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 0.002
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information 
 Score =  287 bits (737), Expect = 2e-94
 Identities = 136/352 (38%), Positives = 180/352 (51%), Gaps = 58/352 (16%)

Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNST 187
           EY   V +G P +  ++++DTGSD+TW QC+PC                           
Sbjct: 1   EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC--------------------------- 33

Query: 188 TCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIKGYFTRYPFLLG 247
                              C + ++Y DGS  +G  ATD +T+             F  G
Sbjct: 34  -------------------CLYQVSYGDGSYTTGDLATDTLTL-----GSSDVVPGFAFG 69

Query: 248 CIRNSSGDKSGASGIMGLDRSPVSIITKTKISY---FSYCLPS-PYGSRGYITFGKRNTV 303
           C  ++ G   GA+G++GL R  +S+ ++T  SY   FSYCLP     S GY++FG     
Sbjct: 70  CGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPDRSSSSSGYLSFG-AAAS 128

Query: 304 KTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSP 363
                 +TP+++ P    +Y + LTGISVGG++LP   + F      IDSG VITRLP  
Sbjct: 129 VPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188

Query: 364 MYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGT 423
            YAALR AFR  M  Y RA G   ILDTCYDL  + +V VP +++HF GG D+ELD  G 
Sbjct: 189 AYAALRDAFRAAMAAYPRAPGFS-ILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGV 247

Query: 424 L-VVASVSQVCLGFAVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNC 474
           L  V   SQVCL FA    D    ++GNVQQ+   V YDVAG R+GF PG C
Sbjct: 248 LYPVDDSSQVCLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 299
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 475
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 100.0
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.96
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.9
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.81
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 95.76
PF1365090 Asp_protease_2: Aspartyl protease 95.03
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 94.18
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 92.09
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 91.15
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 89.35
PF11925370 DUF3443: Protein of unknown function (DUF3443); In 87.78
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 86.44
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 85.48
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 83.19
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 82.25
PF1365090 Asp_protease_2: Aspartyl protease 81.28
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-75  Score=608.43  Aligned_cols=387  Identities=32%  Similarity=0.586  Sum_probs=323.6

Q ss_pred             CceEEEEEcCCCCCCCCCCCCC---CCHHHHHHHHHhHHHhhhcccccccCCCccccCcceeeceeec-CCCCceEEEEE
Q 011922           58 GKASLDVVSKHGPCSTLNQGKS---PSLEETLRRDQQRLYSKYSGRLQKAVPDNLKKTKAFTFPAKIE-SVSADEYYTVV  133 (475)
Q Consensus        58 ~~~~l~l~h~~~~~sp~~~~~~---~~~~~~~~~d~~R~~~l~~~r~~~~~~~~~~~~~~~~~p~~~~-~~~~~~Y~~~v  133 (475)
                      ++++++|+||++||||+.....   +.++++++|+++|++++.+ +..            ...|+..+ ..++++|+++|
T Consensus        23 ~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~------------~~~~~~~~~~~~~~~Y~v~i   89 (431)
T PLN03146         23 GGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRP-TDA------------SPNDPQSDLISNGGEYLMNI   89 (431)
T ss_pred             CceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhh-ccc------------cCCccccCcccCCccEEEEE
Confidence            6799999999999999753332   5677889999999988865 321            11233333 45788999999


Q ss_pred             EeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCC-CCceeeee
Q 011922          134 AIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNS-RECHFNIA  212 (475)
Q Consensus       134 ~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~-~~c~y~~~  212 (475)
                      .||||+|++.|++||||+++||+|++|..|+.|..+.|||++|+||+.++|+++.|+.+...    ..|.. +.|.|.+.
T Consensus        90 ~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~----~~c~~~~~c~y~i~  165 (431)
T PLN03146         90 SIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQ----ASCSDENTCTYSYS  165 (431)
T ss_pred             EcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCC----CCCCCCCCCeeEEE
Confidence            99999999999999999999999999999999889999999999999999999999876532    34753 56999999


Q ss_pred             cCCCCcEEEEEEEEEEEEeccc-----ccCccceecEEEEeEEcCCCCCC-CCCceecCCCCCcchhhhcccc---eeEE
Q 011922          213 YVDGSGNSGFWATDRMTIQEAN-----IKGYFTRYPFLLGCIRNSSGDKS-GASGIMGLDRSPVSIITKTKIS---YFSY  283 (475)
Q Consensus       213 Ygdgs~~~G~~~~Dtltl~~~~-----~~~~~~~~~~~FGc~~~~~g~~~-~~~GilGLg~~~~Sl~sQ~~~~---~FS~  283 (475)
                      |+||+.+.|++++|+|+|++..     +++      +.|||++.+.+.|. ..+||||||++++|+++|+...   +|||
T Consensus       166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~------~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSy  239 (431)
T PLN03146        166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPG------IVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSY  239 (431)
T ss_pred             eCCCCceeeEEEEEEEEeccCCCCcceeCC------EEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEE
Confidence            9999988999999999998743     577      99999999888775 5899999999999999998754   8999


Q ss_pred             ecCCCC---CCcceEEecCCCCcCCCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccC---CCCEEEcCcCcc
Q 011922          284 CLPSPY---GSRGYITFGKRNTVKTKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFT---KLSTEIDSGAVI  357 (475)
Q Consensus       284 cL~~~~---~~~G~L~fGg~d~~~~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~---~~~~iiDSGT~~  357 (475)
                      ||++..   ...|+|+||+........+.||||+.+. .+.+|+|+|++|+||+++++++...|.   .+++||||||++
T Consensus       240 cL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~-~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~  318 (431)
T PLN03146        240 CLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKD-PDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTL  318 (431)
T ss_pred             ECCCCCCCCCCcceEEeCCccccCCCCceEcccccCC-CCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccc
Confidence            997632   2479999998532123458999998643 267999999999999999988776552   368999999999


Q ss_pred             cccCHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEEeCCCeEEEEEE
Q 011922          358 TRLPSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFA  437 (475)
Q Consensus       358 t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl~~~  437 (475)
                      |+||+++|++|+++|.+++...+.... ...+++||+...  ...+|+|+|+| +|+++.|++++|++....+..|+++.
T Consensus       319 t~Lp~~~y~~l~~~~~~~~~~~~~~~~-~~~~~~C~~~~~--~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~~~~Cl~~~  394 (431)
T PLN03146        319 TLLPSDFYSELESAVEEAIGGERVSDP-QGLLSLCYSSTS--DIKLPIITAHF-TGADVKLQPLNTFVKVSEDLVCFAMI  394 (431)
T ss_pred             eecCHHHHHHHHHHHHHHhccccCCCC-CCCCCccccCCC--CCCCCeEEEEE-CCCeeecCcceeEEEcCCCcEEEEEe
Confidence            999999999999999999864333333 446789998543  35799999999 58999999999999877778999998


Q ss_pred             EcCCCCCeeeechhhhcceEEEEECCCCEEEEeeCCCC
Q 011922          438 VYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS  475 (475)
Q Consensus       438 ~~~~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~C~  475 (475)
                      +.   .+.+|||+.|||++||+||++++||||++.+|+
T Consensus       395 ~~---~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~  429 (431)
T PLN03146        395 PT---SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCT  429 (431)
T ss_pred             cC---CCceEECeeeEeeEEEEEECCCCEEeeecCCcC
Confidence            65   236999999999999999999999999999995

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 1e-08
3fv3_A339 Secreted Aspartic Protease 1 From Candida Parapsilo 3e-08
1t6e_X381 Crystal Structure Of The Triticum Aestivum Xylanase 4e-08
2b42_A381 Crystal Structure Of The Triticum Xylanse Inhibitor 4e-08
2rmp_A361 Rmp-Pepstatin A Complex Length = 361 1e-07
1mpp_A361 X-Ray Analyses Of Aspartic Proteinases. V. Structur 2e-07
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 4e-07
3vla_A413 Crystal Structure Of Edgp Length = 413 4e-07
1htr_B329 Crystal And Molecular Structures Of Human Progastri 7e-07
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 1e-06
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 1e-06
3exo_A413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 1e-06
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 1e-06
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 1e-06
2zjj_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-06
3tpj_A433 Apo Structure Of Bace1 Length = 433 2e-06
3bra_A409 Bace-1 Complexed With Compound 1 Length = 409 2e-06
3udh_A404 Crystal Structure Of Bace With Compound 1 Length = 2e-06
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 2e-06
4dpf_A391 Bace-1 In Complex With A Hea-Macrocyclic Type Inhib 2e-06
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 2e-06
3vv6_A416 Crystal Structure Of Beta Secetase In Complex With 2e-06
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 2e-06
1sgz_A389 Crystal Structure Of Unbound Beta-Secretase Catalyt 2e-06
3ckp_A412 Crystal Structure Of Bace-1 In Complex With Inhibit 2e-06
3u6a_A390 Rational Design And Synthesis Of Aminopiperazinones 2e-06
3l58_A414 Structure Of Bace Bound To Sch589432 Length = 414 2e-06
2fdp_A388 Crystal Structure Of Beta-Secretase Complexed With 3e-06
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 3e-06
3cib_A390 Structure Of Bace Bound To Sch727596 Length = 390 3e-06
2hm1_A406 Crystal Structure Of Human Beta-Secretase (Bace) In 3e-06
2zhr_A411 Crystal Structure Of Bace1 In Complex With Om99-2 A 3e-06
4ewo_A386 Design And Synthesis Of Potent Hydroxyethylamine (H 3e-06
4b1d_A388 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 3e-06
2wjo_A412 Human Bace (Beta Secretase) In Complex With Cyclohe 3e-06
3tpr_A433 Crystal Structure Of Bace1 Complexed With An Inhibi 3e-06
3r1g_B402 Structure Basis Of Allosteric Inhibition Of Bace1 B 3e-06
1fkn_A391 Structure Of Beta-Secretase Complexed With Inhibito 3e-06
2qu2_A415 Bace1 With Compound 1 Length = 415 3e-06
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 3e-06
3kmx_A395 Structure Of Bace Bound To Sch346572 Length = 395 3e-06
2of0_A402 X-Ray Crystal Structure Of Beta Secretase Complexed 3e-06
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 3e-06
2qk5_A395 Structure Of Bace1 Bound To Sch626485 Length = 395 3e-06
2q11_A388 Structure Of Bace Complexed To Compound 1 Length = 3e-06
2hiz_A455 Crystal Structure Of Human Beta-Secretase (Bace) In 3e-06
2va5_A455 X-Ray Crystal Structure Of Beta Secretase Complexed 3e-06
3lpi_A455 Structure Of Bace Bound To Sch745132 Length = 455 3e-06
2q15_A385 Structure Of Bace Complexed To Compound 3a Length = 3e-06
2vie_A392 Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2- 3e-06
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 3e-06
2zjh_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 6e-06
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 6e-06
2zji_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 1e-05
3hd8_A389 Crystal Structure Of The Triticum Aestivum Xylanase 3e-05
1wkr_A340 Crystal Structure Of Aspartic Proteinase From Irpex 2e-04
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 2e-04
1tzs_A351 Crystal Structure Of An Activation Intermediate Of 3e-04
1am5_A324 The Crystal Structure And Proposed Amino Acid Seque 6e-04
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 8e-04
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure 
Iteration: 1

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 158/399 (39%), Gaps = 85/399 (21%)
Query: 119 AKIESVSADE---YYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSK 175
           A ++++  D    YY  + IG P Q + +L+DTGS        P  H +   D  FD  +
Sbjct: 2   AMVDNLQGDSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTP--HSY--IDTYFDTER 57
Query: 176 SKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEA-- 233
           S T+                        S+     + Y  GS  +GF   D +TI +   
Sbjct: 58  SSTY-----------------------RSKGFDVTVKYTQGSW-TGFVGEDLVTIPKGFN 93
Query: 234 -----NIKGYFTRYPFLLGCIRNSSGDKSGASGIMGLDRSPV------------SIITKT 276
                NI   F    F L  I+         +GI+GL  + +            S++T+ 
Sbjct: 94  TSFLVNIATIFESENFFLPGIK--------WNGILGLAYATLAKPSSSLETFFDSLVTQA 145
Query: 277 KI-SYFSY-----CLP-SPYGSRG--YITFGKRNTVKTKFIKYTPIITTPEQSEYYDITL 327
            I + FS       LP +  G+ G   +  G   ++    I YTPI    ++  YY I +
Sbjct: 146 NIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPI----KEEWYYQIEI 201
Query: 328 TGISVGGKKLPFSTSYFTKLSTEIDSGAVITRLPSPMYAALRSAFRKR--MKKYKRAKGA 385
             + +GG+ L      +      +DSG  + RLP  ++ A+  A  +   + ++      
Sbjct: 202 LKLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWT 261
Query: 386 GDILDTCYDLRAYETVVVPKITIH---------FLGGVDLELDVRGTLVVASVSQVCLGF 436
           G  L  C+          PKI+I+         F   +  +L ++  ++ A ++  C  F
Sbjct: 262 GSQL-ACWTNSETPWSYFPKISIYLRDENSSRSFRITILPQLYIQ-PMMGAGLNYECYRF 319
Query: 437 AVYPSDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475
            + PS TN+ ++G     G  V +D A +R+GF    C+
Sbjct: 320 GISPS-TNALVIGATVMEGFYVIFDRAQKRVGFAASPCA 357
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339 Back     alignment and structure
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor I Length = 381 Back     alignment and structure
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In Complex With Bacillus Subtilis Xylanase Length = 381 Back     alignment and structure
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361 Back     alignment and structure
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And Refinement At 2.0 Angstroms Resolution Of The Aspartic Proteinase From Mucor Pusillus Length = 361 Back     alignment and structure
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405 Back     alignment and structure
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433 Back     alignment and structure
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390 Back     alignment and structure
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390 Back     alignment and structure
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386 Back     alignment and structure
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388 Back     alignment and structure
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412 Back     alignment and structure
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433 Back     alignment and structure
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402 Back     alignment and structure
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395 Back     alignment and structure
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395 Back     alignment and structure
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388 Back     alignment and structure
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455 Back     alignment and structure
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455 Back     alignment and structure
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455 Back     alignment and structure
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385 Back     alignment and structure
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405 Back     alignment and structure
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase Length = 389 Back     alignment and structure
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex Lacteus Length = 340 Back     alignment and structure
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351 Back     alignment and structure
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324 Back     alignment and structure
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query475
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 9e-83
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 2e-74
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 6e-71
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 1e-27
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 2e-27
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 7e-27
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 8e-27
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 9e-26
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 2e-25
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 1e-24
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 9e-23
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 6e-21
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 1e-20
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 7e-20
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 8e-20
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 3e-19
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 7e-19
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 8e-19
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-18
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 2e-18
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 3e-18
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 3e-18
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 6e-18
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 7e-18
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 1e-17
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 3e-17
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 1e-16
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 3e-16
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 6e-16
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 6e-16
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 4e-15
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 7e-14
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-07
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  260 bits (665), Expect = 9e-83
 Identities = 64/395 (16%), Positives = 120/395 (30%), Gaps = 40/395 (10%)

Query: 110 KKTKAFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDP 169
           K       P + +  S   ++  +    P   V +L+D   +  W  C+        + P
Sbjct: 5   KPINLVVLPVQNDG-STGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAP 63

Query: 170 LFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSREC-HFNIAYVDGSGNSGFWATDRM 228
               ++    +   C S           S   C+   C   +   +      G    D +
Sbjct: 64  FCHSTQCSRANTHQCLSCPA-------ASRPGCHKNTCGLMSTNPITQQTGLGELGEDVL 116

Query: 229 TIQEANIKGYFTRYP-----FLLGCIRNSSGDK---SGASGIMGLDRSPVSIITKTKISY 280
            I                  FL  C  +    K       G+ GL  +P+S+  +    +
Sbjct: 117 AIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHF 176

Query: 281 -----FSYCLPSPYGSRGYITFG--------KRNTVKTKFIKYTPIITTPEQSEYYDITL 327
                F+ CL     S+G I FG         +N      + +TP+  T +    Y++ +
Sbjct: 177 GLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQG--EYNVRV 234

Query: 328 TGISVGGKKLPFSTSYFTKLSTE------IDSGAVITRLPSPMYAALRSAFRKRMKKYKR 381
             I +    +       + +         I +      L   +Y A    F +++ K  +
Sbjct: 235 NSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQ 294

Query: 382 AKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCLGFAVYPS 441
            K        C++           + +    G    +     +V A     CLG      
Sbjct: 295 VKS-VAPFGLCFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGM 353

Query: 442 DTNSF-LLGNVQQRGHEVHYDVAGRRLGFGPGNCS 475
              +   LG  Q   + V +D+A  R+GF   +  
Sbjct: 354 QPRAEITLGARQLEENLVVFDLARSRVGFSTSSLH 388
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.88
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.6
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 90.66
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 89.81
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 83.19
2hs1_A99 HIV-1 protease; ultra-high resolution active site 82.63
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=1e-63  Score=516.97  Aligned_cols=340  Identities=24%  Similarity=0.408  Sum_probs=285.6

Q ss_pred             CcceeeceeecCCCCceEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccC
Q 011922          112 TKAFTFPAKIESVSADEYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKK  191 (475)
Q Consensus       112 ~~~~~~p~~~~~~~~~~Y~~~v~iGtP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~  191 (475)
                      .+.+.+|++.+ ..+++|+++|.||||+|++.|+|||||+++||+|++|             .+|+||+.++|.++.|..
T Consensus         6 ~~~~~~pv~~d-~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c-------------~~Sst~~~v~C~s~~C~~   71 (413)
T 3vla_A            6 PSALVVPVKKD-ASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN-------------YVSSTYRPVRCRTSQCSL   71 (413)
T ss_dssp             CSEEEEEEEEC-TTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS-------------CCCTTCEECBTTSHHHHH
T ss_pred             CccEEEEeeec-CCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC-------------CCCCCcCccCCCcccccc
Confidence            34678899875 6789999999999999999999999999999999976             379999999999999987


Q ss_pred             ccCCCC------CCCCCCCCCceeeeec-CCCCcEEEEEEEEEEEEec---------ccccCccceecEEEEeEEcC--C
Q 011922          192 LRGLFP------SDDNCNSRECHFNIAY-VDGSGNSGFWATDRMTIQE---------ANIKGYFTRYPFLLGCIRNS--S  253 (475)
Q Consensus       192 ~~~~~~------~~~~C~~~~c~y~~~Y-gdgs~~~G~~~~Dtltl~~---------~~~~~~~~~~~~~FGc~~~~--~  253 (475)
                      ...+..      ...+|.++.|.|.+.| +||+.+.|++++|+|+|++         ..+++      +.|||++.+  .
T Consensus        72 ~~~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~------~~FGc~~~~~~~  145 (413)
T 3vla_A           72 SGSIACGDCFNGPRPGCNNNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPR------FIFSCAPTSLLQ  145 (413)
T ss_dssp             TTCCEEECCSSCCBTTBCSSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEE------EEEEEECGGGGT
T ss_pred             cccCCCcccccCCCCCCCCCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCC------EEEECccccccc
Confidence            654210      0135666789999999 5888899999999999984         23466      999999986  4


Q ss_pred             CCCCCCCceecCCCCCcchhhhcccc-----eeEEecCCCCCCcceEEecCCCCc------CCCC-eEEeeCccCCCC--
Q 011922          254 GDKSGASGIMGLDRSPVSIITKTKIS-----YFSYCLPSPYGSRGYITFGKRNTV------KTKF-IKYTPIITTPEQ--  319 (475)
Q Consensus       254 g~~~~~~GilGLg~~~~Sl~sQ~~~~-----~FS~cL~~~~~~~G~L~fGg~d~~------~~~~-~~~tpl~~~~~~--  319 (475)
                      +.+..++||||||++++|+++|+..+     +|||||++.....|.|+||+.|..      +.+. ++||||+.++..  
T Consensus       146 g~~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~  225 (413)
T 3vla_A          146 NLASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTS  225 (413)
T ss_dssp             TSCTTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCS
T ss_pred             CcccccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccc
Confidence            56668999999999999999998763     899999986556899999998753      3567 999999986532  


Q ss_pred             --------CeeEEEEEeEEEECCEEeeecccccC-----CCCEEEcCcCcccccCHHHHHHHHHHHHHHhh--ccccCCC
Q 011922          320 --------SEYYDITLTGISVGGKKLPFSTSYFT-----KLSTEIDSGAVITRLPSPMYAALRSAFRKRMK--KYKRAKG  384 (475)
Q Consensus       320 --------~~~y~v~l~gI~vgg~~l~~~~~~~~-----~~~~iiDSGT~~t~Lp~~~y~~l~~~~~~~~~--~~~~~~~  384 (475)
                              ..+|+|+|++|+||++.+.+++..|.     .+++||||||++|+||+++|++|+++|.+++.  .+++..+
T Consensus       226 ~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~~  305 (413)
T 3vla_A          226 ATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVAS  305 (413)
T ss_dssp             SSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEECC
T ss_pred             ccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCCC
Confidence                    27999999999999999998876663     36899999999999999999999999999875  3454444


Q ss_pred             CccccccccccCCCce----eecceEEEEEcC-CcEEEecCCCeEEEeCCCeEEEEEEEcCCC-CCeeeechhhhcceEE
Q 011922          385 AGDILDTCYDLRAYET----VVVPKITIHFLG-GVDLELDVRGTLVVASVSQVCLGFAVYPSD-TNSFLLGNVQQRGHEV  458 (475)
Q Consensus       385 ~~~~~~~C~~~~~~~~----~~~P~i~~~f~g-g~~~~l~~~~~~~~~~~~~~Cl~~~~~~~~-~~~~IlG~~fl~~~~v  458 (475)
                       ...++.||+.++...    ..+|+|+|+|.| +++++|++++|+++.+.+..|++|...... .+.||||++|||++|+
T Consensus       306 -~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~IlGd~fl~~~~v  384 (413)
T 3vla_A          306 -VAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGSNLRTSIVIGGHQLEDNLV  384 (413)
T ss_dssp             -CTTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEESSCSSSEEECHHHHTTEEE
T ss_pred             -CCCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCCCcccceeEehhhhcCeEE
Confidence             456789998875432    579999999965 489999999999987667899999876432 3579999999999999


Q ss_pred             EEECCCCEEEEeeC
Q 011922          459 HYDVAGRRLGFGPG  472 (475)
Q Consensus       459 vfD~~~~~iGFa~~  472 (475)
                      +||++++|||||++
T Consensus       385 vfD~~~~riGfa~~  398 (413)
T 3vla_A          385 QFDLATSRVGFSGT  398 (413)
T ss_dssp             EEETTTTEEEEEEE
T ss_pred             EEECCCCEEEEEEe
Confidence            99999999999985
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 475
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 3e-53
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 6e-38
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 3e-36
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 4e-36
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 2e-35
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 1e-34
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 2e-34
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-34
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 3e-33
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 3e-33
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 2e-32
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 6e-32
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 6e-32
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 9e-32
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 1e-31
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 2e-31
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-31
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 1e-30
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 8e-30
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 7e-29
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 9e-29
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 2e-24
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  181 bits (460), Expect = 3e-53
 Identities = 65/369 (17%), Positives = 116/369 (31%), Gaps = 41/369 (11%)

Query: 128 EYYTVVAIGKPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNST 187
            Y      G       L+LD    + W+ C       +          +  +    C + 
Sbjct: 15  LYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCPAP 69

Query: 188 TCKKLRGLFPSDDNCNSRECHFNIAYVDGSGNSGFWATDRMTIQEANIK--GYFTRYPFL 245
           +C          D  +     +    V G+  +G  +  R      +            L
Sbjct: 70  SCG--------SDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVL 121

Query: 246 LGCIRNSSGD--KSGASGIMGLDRSPVSIITKTKISY-----FSYCLPSPYGSRGYITFG 298
             C  +        G++G+ GL  S +++  +   +      F  CLP+          G
Sbjct: 122 AACAPSKLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGG 181

Query: 299 KRNTVK-TKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVI 357
                + T+ + YTP++T    S  + I+   I VG  ++P            + +    
Sbjct: 182 PVPWPQFTQSMPYTPLVTKG-GSPAHYISARSIVVGDTRVPVPEGALATGGVMLSTRLPY 240

Query: 358 TRLPSPMYAALRSAFRKRMKKYK-------RAKGAGDILDTCYDLRAYE----TVVVPKI 406
             L   +Y  L  AF K +           RA  A      CYD +          VP +
Sbjct: 241 VLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNV 300

Query: 407 TIHFLGGVDLELDVRGTLVVASVSQVCLGFA------VYPSDTNSFLLGNVQQRGHEVHY 460
            +   GG D  +  + ++V       C+ F              + +LG  Q     + +
Sbjct: 301 QLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDF 360

Query: 461 DVAGRRLGF 469
           D+  +RLGF
Sbjct: 361 DMEKKRLGF 369
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query475
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=8.4e-56  Score=449.71  Aligned_cols=346  Identities=22%  Similarity=0.366  Sum_probs=272.5

Q ss_pred             eEEEEEcCCCCCCCCCCCCCCCHHHHHHHHHhHHHhhhccccc---ccCCCccccCcceeeceeecCCCCceEEEEEEeC
Q 011922           60 ASLDVVSKHGPCSTLNQGKSPSLEETLRRDQQRLYSKYSGRLQ---KAVPDNLKKTKAFTFPAKIESVSADEYYTVVAIG  136 (475)
Q Consensus        60 ~~l~l~h~~~~~sp~~~~~~~~~~~~~~~d~~R~~~l~~~r~~---~~~~~~~~~~~~~~~p~~~~~~~~~~Y~~~v~iG  136 (475)
                      +++||+++            .++++.++++..+.++++. |..   +.... .........|+..  ..+.+|+++|.||
T Consensus         2 v~ipl~k~------------~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~l~n--~~d~~Y~~~i~iG   65 (370)
T d3psga_           2 VKVPLVRK------------KSLRQNLIKDGKLKDFLKT-HKHNPASKYFP-EAAALIGDEPLEN--YLDTEYFGTIGIG   65 (370)
T ss_dssp             EEEEEEEC------------CCHHHHHHHTTCHHHHHHH-CCCCGGGGTCT-TSCCSSCCCTTGG--GTTCCEEEEEEET
T ss_pred             EEEecccC------------ccHHHHHHHcCcHHHHHHh-cccchhhhhcc-cccCccccccccc--ccCCEEEEEEEEc
Confidence            46788765            4577888777777666654 221   11000 1111223456543  4568999999999


Q ss_pred             CCCceEEEEEEcCCCceeEeCCCCCCccCCCCCCCCCCCCCccccccCCCccccCccCCCCCCCCCCCCCceeeeecCCC
Q 011922          137 KPKQYVSLLLDTGSDVTWTQCKPCIHCFQQRDPLFDPSKSKTFSKIPCNSTTCKKLRGLFPSDDNCNSRECHFNIAYVDG  216 (475)
Q Consensus       137 tP~q~~~vi~DTGS~~~Wv~c~~C~~C~~~~~~~fdps~SsT~~~~~C~s~~C~~~~~~~~~~~~C~~~~c~y~~~Ygdg  216 (475)
                      ||+|+++|+|||||+++||+|++|..|..+..+.|||++|+||+...                       |.|.+.|++|
T Consensus        66 tP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~-----------------------~~~~~~Yg~G  122 (370)
T d3psga_          66 TPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS-----------------------QELSITYGTG  122 (370)
T ss_dssp             TTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE-----------------------EEEEEESSSC
T ss_pred             CCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccCC-----------------------CcEEEEeCCc
Confidence            99999999999999999999999999887888999999999998864                       6999999999


Q ss_pred             CcEEEEEEEEEEEEecccccCccceecEEEEeEEcCCCCC---CCCCceecCCCCCcc----------hhhhcccc--ee
Q 011922          217 SGNSGFWATDRMTIQEANIKGYFTRYPFLLGCIRNSSGDK---SGASGIMGLDRSPVS----------IITKTKIS--YF  281 (475)
Q Consensus       217 s~~~G~~~~Dtltl~~~~~~~~~~~~~~~FGc~~~~~g~~---~~~~GilGLg~~~~S----------l~sQ~~~~--~F  281 (475)
                      + +.|.+++|++.+++..+++      +.|||++...+.+   ...+||+|||+...+          +..|....  .|
T Consensus       123 s-~~G~~~~d~~~~~~~~~~~------~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~~i~~~~f  195 (370)
T d3psga_         123 S-MTGILGYDTVQVGGISDTN------QIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQGLVSQDLF  195 (370)
T ss_dssp             E-EEEEEEEEEEEETTEEEEE------EEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEE
T ss_pred             e-EEEEEEEEEEeeeceeeee------eEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhccccccee
Confidence            7 7999999999999998888      9999999887643   268999999986543          33444333  99


Q ss_pred             EEecCCCCCCcceEEecCCCCcC-CCCeEEeeCccCCCCCeeEEEEEeEEEECCEEeeecccccCCCCEEEcCcCccccc
Q 011922          282 SYCLPSPYGSRGYITFGKRNTVK-TKFIKYTPIITTPEQSEYYDITLTGISVGGKKLPFSTSYFTKLSTEIDSGAVITRL  360 (475)
Q Consensus       282 S~cL~~~~~~~G~L~fGg~d~~~-~~~~~~tpl~~~~~~~~~y~v~l~gI~vgg~~l~~~~~~~~~~~~iiDSGT~~t~L  360 (475)
                      |+|+.+.....|.|+|||+|+.+ .+++.|+|+..    ..+|.|.+++|.++|+.+.....    ..+||||||++++|
T Consensus       196 s~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~----~~~w~v~~~~i~v~g~~~~~~~~----~~aiiDSGTs~~~l  267 (370)
T d3psga_         196 SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSV----EGYWQITLDSITMDGETIACSGG----CQAIVDTGTSLLTG  267 (370)
T ss_dssp             EEEEC-----CEEEEETCCCGGGBSSCCEEEECSE----ETTEEEEECEEESSSSEEECTTC----EEEEECTTCCSEEE
T ss_pred             EEEeecCCCCCceEecCCcCchhcccceeEEeecc----cceEEEEEeeEEeCCeEEecCCC----ccEEEecCCceEeC
Confidence            99999876678999999999884 88999999987    67999999999999988765433    46999999999999


Q ss_pred             CHHHHHHHHHHHHHHhhccccCCCCccccccccccCCCceeecceEEEEEcCCcEEEecCCCeEEEeCCCeEEE-EEEEc
Q 011922          361 PSPMYAALRSAFRKRMKKYKRAKGAGDILDTCYDLRAYETVVVPKITIHFLGGVDLELDVRGTLVVASVSQVCL-GFAVY  439 (475)
Q Consensus       361 p~~~y~~l~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~gg~~~~l~~~~~~~~~~~~~~Cl-~~~~~  439 (475)
                      |+++|++|++++.+.    ....  ..+..+|++.     ..+|+|+|+| ||+++.|++++|+++.+  ..|+ +|...
T Consensus       268 p~~~~~~i~~~l~~~----~~~~--~~~~~~C~~~-----~~~P~l~f~f-~g~~~~l~~~~yi~~~~--~~c~~~~~~~  333 (370)
T d3psga_         268 PTSAIANIQSDIGAS----ENSD--GEMVISCSSI-----DSLPDIVFTI-DGVQYPLSPSAYILQDD--DSCTSGFEGM  333 (370)
T ss_dssp             EHHHHHHHHHHTTCE----ECTT--CCEECCGGGG-----GGCCCEEEEE-TTEEEEECHHHHEEECS--SCEEESEEEE
T ss_pred             CHHHHHHHHHHhCCe----eecC--CcEEEecccc-----CCCceEEEEE-CCEEEEEChHHeEEEcC--CeEEEEEEEc
Confidence            999999999988764    1222  2345567643     3689999999 89999999999998753  3464 55543


Q ss_pred             C---CCCCeeeechhhhcceEEEEECCCCEEEEeeCC
Q 011922          440 P---SDTNSFLLGNVQQRGHEVHYDVAGRRLGFGPGN  473 (475)
Q Consensus       440 ~---~~~~~~IlG~~fl~~~~vvfD~~~~~iGFa~~~  473 (475)
                      .   ...+.||||++|||++|++||++++||||||++
T Consensus       334 ~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~a  370 (370)
T d3psga_         334 DVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA  370 (370)
T ss_dssp             CCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred             ccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEecC
Confidence            2   345679999999999999999999999999974
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure